-- dump date 20140620_045655 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 chrom_position -- field 4 chromosome -- field 5 codon_start -- field 6 contig -- field 7 description -- field 8 end_pos -- field 9 gene -- field 10 gene_id -- field 11 name -- field 12 organism -- field 13 product -- field 14 protein_id -- field 15 start_pos -- field 16 strand -- field 17 taxid -- field 18 type -- header -- id GI chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_002213853.1 198241669 115..240 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 240 439851000001 SeD_B0001 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213853.1 115 D 439851 CDS YP_002213854.1 198241690 complement(1770..2171) 1 NC_011204.1 hypothetical protein 2171 439851000004 SeD_B0004 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213854.1 1770 R 439851 CDS YP_002213855.1 198241663 complement(2158..2277) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 2277 439851000005 SeD_B0005 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213855.1 2158 R 439851 CDS YP_002213856.1 198241658 complement(2791..3906) 1 NC_011204.1 TlpA 3906 439851000007 SeD_B0007 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 TlpA YP_002213856.1 2791 R 439851 CDS YP_002213857.1 198241732 complement(4763..4897) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 4897 439851000009 SeD_B0009 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213857.1 4763 R 439851 CDS YP_002213858.1 198241715 5308..6048 1 NC_011204.1 identified by match to protein family HMM PF00484; match to protein family HMM TIGR01409; Mig5 6048 439851000010 SeD_B0010 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Mig5 YP_002213858.1 5308 D 439851 CDS YP_002213859.1 198241672 6255..6815 1 NC_011204.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796; RlgA 6815 439851000011 SeD_B0011 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RlgA YP_002213859.1 6255 D 439851 CDS YP_002213860.1 198241725 6799..8463 1 NC_011204.1 identified by match to protein family HMM PF00665; integrase, catalytic region 8463 439851000012 SeD_B0013 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 integrase, catalytic region YP_002213860.1 6799 D 439851 CDS YP_002213861.1 198241704 8453..9421 1 NC_011204.1 type II secretion system protein 9421 439851000013 SeD_B0014 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type II secretion system protein YP_002213861.1 8453 D 439851 CDS YP_002213862.1 198241729 complement(9610..10647) 1 NC_011204.1 ransposase of 10647 439851000014 SeD_B0015 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ransposase of YP_002213862.1 9610 R 439851 CDS YP_002213863.1 198241695 complement(10855..10992) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 10992 439851000015 SeD_B0016 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213863.1 10855 R 439851 CDS YP_002213864.1 198241670 11173..12147 1 NC_011204.1 identified by match to protein family HMM PF00126; virulence genes transcriptional activator 12147 439851000016 SeD_B0017 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 virulence genes transcriptional activator YP_002213864.1 11173 D 439851 CDS YP_002213865.1 198241688 complement(12104..12250) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 12250 439851000017 SeD_B0018 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213865.1 12104 R 439851 CDS YP_002213866.1 198241717 12659..13426 1 NC_011204.1 identified by match to protein family HMM PF03538; 28.1 kDa virulence protein 13426 439851000019 SeD_B0020 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 28.1 kDa virulence protein YP_002213866.1 12659 D 439851 CDS YP_002213867.1 198241728 13380..13556 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 13556 439851000020 SeD_B0021 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213867.1 13380 D 439851 CDS YP_002213868.1 198241653 complement(15511..15657) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 15657 439851000022 SeD_B0023 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213868.1 15511 R 439851 CDS YP_002213869.1 198241705 15808..16395 1 NC_011204.1 phosphothreonine lyase OspF 16395 439851000023 SeD_B0024 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphothreonine lyase OspF YP_002213869.1 15808 D 439851 CDS YP_002213870.1 198241667 16449..16568 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 16568 439851000024 SeD_B0025 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213870.1 16449 D 439851 CDS YP_002213871.1 198241655 16656..17306 1 NC_011204.1 identified by match to protein family HMM PF05563; virulence protein VsdE 17306 439851000025 SeD_B0026 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 virulence protein VsdE YP_002213871.1 16656 D 439851 CDS YP_002213872.1 198241738 complement(17433..17858) 1 NC_011204.1 identified by match to protein family HMM PF01797; transposase 17858 439851000026 SeD_B0027 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transposase YP_002213872.1 17433 R 439851 CDS YP_002213873.1 198241652 complement(19452..19940) 1 NC_011204.1 hypothetical protein 19940 439851000030 SeD_B0031 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213873.1 19452 R 439851 CDS YP_002213874.1 198241681 complement(19965..20678) 1 NC_011204.1 identified by match to protein family HMM PF00563; putative cyclic diguanylate phosphodiesterase (EAL) domain protein 20678 439851000031 SeD_B0032 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 putative cyclic diguanylate phosphodiesterase (EAL) domain protein YP_002213874.1 19965 R 439851 CDS YP_002213875.1 198241686 complement(20687..21469) 1 NC_011204.1 identified by match to protein family HMM PF00589; Rsd 21469 439851000032 SeD_B0033 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Rsd YP_002213875.1 20687 R 439851 CDS YP_002213876.1 198241703 complement(21504..22025) 1 NC_011204.1 hypothetical protein 22025 439851000033 SeD_B0034 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213876.1 21504 R 439851 CDS YP_002213877.1 198241699 complement(22022..22312) 1 NC_011204.1 hypothetical protein 22312 439851000034 SeD_B0035 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213877.1 22022 R 439851 CDS YP_002213878.1 198241711 complement(22314..22619) 1 NC_011204.1 controlled cell death protein; post-segregation toxin; toxin addiction system; plasmid maintenance protein CcdB 22619 439851000035 SeD_B0036 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid maintenance protein CcdB YP_002213878.1 22314 R 439851 CDS YP_002213879.1 198241708 complement(22621..22839) 1 NC_011204.1 identified by match to protein family HMM PF07362; plasmid maintenance protein CcdA 22839 439851000036 SeD_B0037 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid maintenance protein CcdA YP_002213879.1 22621 R 439851 CDS YP_002213880.1 198241733 22916..23056 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 23056 439851000037 SeD_B0038 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213880.1 22916 D 439851 CDS YP_002213881.1 198241691 complement(23061..23177) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 23177 439851000038 SeD_B0040 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213881.1 23061 R 439851 CDS YP_002213882.1 198241659 23166..23294 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 23294 439851000039 SeD_B0039 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213882.1 23166 D 439851 CDS YP_002213883.1 198241724 23287..23400 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 23400 439851000040 SeD_B0041 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213883.1 23287 D 439851 CDS YP_002213884.1 198241645 complement(23553..24374) 1 NC_011204.1 VagD 24374 439851000041 SeD_B0042 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 VagD YP_002213884.1 23553 R 439851 CDS YP_002213885.1 198241675 24447..24734 1 NC_011204.1 hypothetical protein 24734 439851000042 SeD_B0043 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213885.1 24447 D 439851 CDS YP_002213886.1 198241671 complement(24809..25657) 1 NC_011204.1 identified by match to protein family HMM PF06977; SrgB 25657 439851000043 SeD_B0044 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 SrgB YP_002213886.1 24809 R 439851 CDS YP_002213887.1 198241654 complement(25683..25829) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 25829 439851000044 SeD_B0045 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213887.1 25683 R 439851 CDS YP_002213888.1 198241668 complement(25819..25938) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 25938 439851000045 SeD_B0046 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213888.1 25819 R 439851 CDS YP_002213889.1 198241684 complement(26105..26317) 1 NC_011204.1 identified by match to protein family HMM PF04703; hypothetical protein 26317 439851000046 SeD_B0047 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213889.1 26105 R 439851 CDS YP_002213890.1 198241687 complement(26390..26974) 1 NC_011204.1 hypothetical protein 26974 439851000047 SeD_B0048 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213890.1 26390 R 439851 CDS YP_002213891.1 198241693 complement(27099..27812) 1 NC_011204.1 K88 minor fimbrial subunit FaeJ 27812 439851000048 SeD_B0049 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 K88 minor fimbrial subunit FaeJ YP_002213891.1 27099 R 439851 CDS YP_002213892.1 198241647 complement(27812..28087) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 28087 439851000049 SeD_B0050 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213892.1 27812 R 439851 CDS YP_002213893.1 198241700 complement(28074..28838) 1 NC_011204.1 identified by match to protein family HMM PF02432; minor fimbrial subunit 28838 439851000050 SeD_B0051 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 minor fimbrial subunit YP_002213893.1 28074 R 439851 CDS YP_002213894.1 198241651 complement(28866..29663) 1 NC_011204.1 identified by match to protein family HMM PF02432; minor fimbrial subunit 29663 439851000051 SeD_B0052 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 minor fimbrial subunit YP_002213894.1 28866 R 439851 CDS YP_002213895.1 198241639 complement(29899..30222) 1 NC_011204.1 hypothetical protein 30222 439851000052 SeD_B0053 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213895.1 29899 R 439851 CDS YP_002213896.1 198241644 30313..30471 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 30471 439851000053 SeD_B0054 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213896.1 30313 D 439851 CDS YP_002213897.1 198241646 30515..30658 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 30658 439851000054 SeD_B0055 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213897.1 30515 D 439851 CDS YP_002213898.1 198241696 30802..30939 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 30939 439851000055 SeD_B0056 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213898.1 30802 D 439851 CDS YP_002213899.1 198241676 31630..32289 1 NC_011204.1 hypothetical protein 32289 439851000056 SeD_B0057 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213899.1 31630 D 439851 CDS YP_002213900.1 198241709 32325..33119 1 NC_011204.1 hypothetical protein 33119 439851000057 SeD_B0058 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213900.1 32325 D 439851 CDS YP_002213901.1 198241685 complement(34454..34576) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 34576 439851000061 SeD_B0063 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213901.1 34454 R 439851 CDS YP_002213902.1 198241707 34604..34771 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 34771 439851000062 SeD_B0064 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213902.1 34604 D 439851 CDS YP_002213903.1 198241674 34746..34865 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 34865 439851000063 SeD_B0065 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213903.1 34746 D 439851 CDS YP_002213904.1 198241680 complement(34931..35146) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 35146 439851000064 SeD_B0066 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213904.1 34931 R 439851 CDS YP_002213905.1 198241702 complement(35158..36027) 1 NC_011204.1 RepA; replication protein 36027 439851000065 SeD_B0067 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 replication protein YP_002213905.1 35158 R 439851 CDS YP_002213906.1 198241698 complement(36345..36590) 1 NC_011204.1 replication protein 36590 439851000068 SeD_B0070 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 replication protein YP_002213906.1 36345 R 439851 CDS YP_002213907.1 198241683 complement(37317..37436) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 37436 439851000071 SeD_B0073 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213907.1 37317 R 439851 CDS YP_002213908.1 198241694 complement(37399..37851) 1 NC_011204.1 dsba oxidoreductase 37851 439851000072 SeD_B0074 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dsba oxidoreductase YP_002213908.1 37399 R 439851 CDS YP_002213909.1 198241727 complement(37968..38531) 1 NC_011204.1 identified by match to protein family HMM PF05286; conjugal transfer fertility inhibition protein FinO 38531 439851000073 SeD_B0075 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 conjugal transfer fertility inhibition protein FinO YP_002213909.1 37968 R 439851 CDS YP_002213910.1 198241638 complement(38586..39326) 1 NC_011204.1 identified by match to protein family HMM PF05857; match to protein family HMM TIGR02755; conjugal transfer pilus acetylation protein TraX 39326 traX 439851000074 traX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 conjugal transfer pilus acetylation protein TraX YP_002213910.1 38586 R 439851 CDS YP_002213911.1 198241643 complement(39346..43632) 1 NC_011204.1 identified by match to protein family HMM PF07057; match to protein family HMM TIGR02760; conjugative transfer relaxase protein TraI 43632 traI 439851000075 traI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 conjugative transfer relaxase protein TraI YP_002213911.1 39346 R 439851 CDS YP_002213912.1 198241673 43658..44320 1 NC_011204.1 identified by match to protein family HMM PF00239; TnpR 44320 439851000076 SeD_B0078 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 TnpR YP_002213912.1 43658 D 439851 CDS YP_002213913.1 198241692 44971..45099 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 45099 439851000077 SeD_B0079 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213913.1 44971 D 439851 CDS YP_002213914.1 198241730 45176..45292 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 45292 439851000078 SeD_B0080 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213914.1 45176 D 439851 CDS YP_002213915.1 198241661 45398..46525 1 NC_011204.1 hypothetical protein 46525 439851000079 SeD_B0081 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213915.1 45398 D 439851 CDS YP_002213916.1 198241719 46541..46696 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 46696 439851000080 SeD_B0082 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213916.1 46541 D 439851 CDS YP_002213917.1 198241648 complement(47373..47489) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 47489 439851000082 SeD_B0084 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213917.1 47373 R 439851 CDS YP_002213918.1 198241734 complement(48282..48488) 1 NC_011204.1 identified by match to protein family HMM PF05321; hypothetical protein 48488 439851000084 SeD_B0086 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213918.1 48282 R 439851 CDS YP_002213919.1 198241731 complement(48485..50638) 1 NC_011204.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01056; DNA topoisomerase III 50638 439851000085 SeD_B0087 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA topoisomerase III YP_002213919.1 48485 R 439851 CDS YP_002213920.1 198241665 complement(50643..51218) 1 NC_011204.1 hypothetical protein 51218 439851000086 SeD_B0088 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213920.1 50643 R 439851 CDS YP_002213921.1 198241697 complement(51222..51368) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 51368 439851000087 SeD_B0089 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213921.1 51222 R 439851 CDS YP_002213922.1 198241737 complement(51529..51831) 1 NC_011204.1 killer protein 51831 439851000088 SeD_B0090 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 killer protein YP_002213922.1 51529 R 439851 CDS YP_002213923.1 198241701 complement(51828..52241) 1 NC_011204.1 hypothetical protein 52241 439851000089 SeD_B0091 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213923.1 51828 R 439851 CDS YP_002213924.1 198241714 complement(52238..54073) 1 NC_011204.1 identified by match to protein family HMM PF02534; TaxB 54073 439851000090 SeD_B0092 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 TaxB YP_002213924.1 52238 R 439851 CDS YP_002213925.1 198241662 complement(55108..56313) 1 NC_011204.1 identified by match to protein family HMM PF03743; pilx10 protein 56313 439851000092 SeD_B0095 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pilx10 protein YP_002213925.1 55108 R 439851 CDS YP_002213926.1 198241736 complement(56310..57239) 1 NC_011204.1 identified by match to protein family HMM PF03524; pilx9 protein 57239 439851000093 SeD_B0096 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pilx9 protein YP_002213926.1 56310 R 439851 CDS YP_002213927.1 198241718 complement(57244..57957) 1 NC_011204.1 identified by match to protein family HMM PF04335; pilx8 protein 57957 439851000094 SeD_B0097 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pilx8 protein YP_002213927.1 57244 R 439851 CDS YP_002213928.1 198241640 complement(58117..58233) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 58233 439851000095 SeD_B0098 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213928.1 58117 R 439851 CDS YP_002213929.1 198241713 complement(58202..59335) 1 NC_011204.1 identified by match to protein family HMM PF04610; pilx6 protein 59335 439851000096 SeD_B0099 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pilx6 protein YP_002213929.1 58202 R 439851 CDS YP_002213930.1 198241679 complement(59345..59572) 1 NC_011204.1 Eex protein 59572 439851000097 SeD_B0100 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Eex protein YP_002213930.1 59345 R 439851 CDS YP_002213931.1 198241710 complement(59573..60331) 1 NC_011204.1 pilx5 protein 60331 439851000098 SeD_B0101 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pilx5 protein YP_002213931.1 59573 R 439851 CDS YP_002213932.1 198241712 complement(60342..62972) 1 NC_011204.1 identified by match to protein family HMM PF03135; pilx4 protein 62972 439851000099 SeD_B0102 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pilx4 protein YP_002213932.1 60342 R 439851 CDS YP_002213933.1 198241689 complement(63114..63410) 1 NC_011204.1 pilx2 protein 63410 439851000100 SeD_B0103 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pilx2 protein YP_002213933.1 63114 R 439851 CDS YP_002213934.1 198241677 complement(63388..64035) 1 NC_011204.1 identified by match to protein family HMM PF01464; pilx1 protein 64035 439851000101 SeD_B0104 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pilx1 protein YP_002213934.1 63388 R 439851 CDS YP_002213935.1 198241723 complement(64068..64280) 1 NC_011204.1 hypothetical protein 64280 439851000102 SeD_B0105 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213935.1 64068 R 439851 CDS YP_002213936.1 198241726 complement(65074..66255) 1 NC_011204.1 identified by match to protein family HMM PF03432; relaxase/Mobilization nuclease domain protein 66255 439851000103 SeD_B0106 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 relaxase/Mobilization nuclease domain protein YP_002213936.1 65074 R 439851 CDS YP_002213937.1 198241650 complement(66258..66872) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 66872 439851000104 SeD_B0107 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213937.1 66258 R 439851 CDS YP_002213938.1 198241664 66928..67263 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 67263 439851000105 SeD_B0108 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213938.1 66928 D 439851 CDS YP_002213939.1 198241739 67244..67618 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 67618 439851000106 SeD_B0109 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213939.1 67244 D 439851 CDS YP_002213940.1 198241722 complement(67633..67812) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 67812 439851000107 SeD_B0110 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213940.1 67633 R 439851 CDS YP_002213941.1 198241642 complement(67855..68184) 1 NC_011204.1 hypothetical protein 68184 439851000108 SeD_B0111 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213941.1 67855 R 439851 CDS YP_002213942.1 198241678 complement(68277..68492) 1 NC_011204.1 YajA protein 68492 439851000109 SeD_B0112 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 YajA protein YP_002213942.1 68277 R 439851 CDS YP_002213943.1 198241721 complement(68482..68727) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 68727 439851000110 SeD_B0113 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213943.1 68482 R 439851 CDS YP_002213944.1 198241657 complement(68772..69161) 1 NC_011204.1 hypothetical protein 69161 439851000111 SeD_B0114 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213944.1 68772 R 439851 CDS YP_002213945.1 198241735 complement(69241..69522) 1 NC_011204.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; putative stability protein StbE 69522 439851000112 SeD_B0115 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 putative stability protein StbE YP_002213945.1 69241 R 439851 CDS YP_002213946.1 198241720 complement(69512..69763) 1 NC_011204.1 identified by match to protein family HMM PF02604; putative stability protein StbD 69763 439851000113 SeD_B0116 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 putative stability protein StbD YP_002213946.1 69512 R 439851 CDS YP_002213947.1 198241641 complement(69760..69960) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 69960 439851000114 SeD_B0117 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213947.1 69760 R 439851 CDS YP_002213948.1 198241682 complement(70551..70703) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 70703 439851000115 SeD_B0118 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213948.1 70551 R 439851 CDS YP_002213949.1 198241660 complement(70808..70921) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 70921 439851000116 SeD_B0119 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213949.1 70808 R 439851 CDS YP_002213950.1 198241649 70977..71813 1 NC_011204.1 identified by match to protein family HMM PF01051; PI protein 71813 439851000117 SeD_B0120 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PI protein YP_002213950.1 70977 D 439851 CDS YP_002213951.1 198241637 71853..72299 1 NC_011204.1 hypothetical protein 72299 439851000118 SeD_B0121 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213951.1 71853 D 439851 CDS YP_002213952.1 198241716 72367..72789 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 72789 439851000119 SeD_B0122 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213952.1 72367 D 439851 CDS YP_002213953.1 198241706 complement(73014..73193) 1 NC_011204.1 identified by glimmer; putative; hypothetical protein 73193 439851000120 SeD_B0123 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213953.1 73014 R 439851 CDS YP_002213954.1 198241666 complement(73428..73658) 1 NC_011204.1 identified by match to protein family HMM PF09274; hypothetical protein 73658 439851000121 SeD_B0124 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213954.1 73428 R 439851 CDS YP_002213955.1 198241656 complement(73710..74330) 1 NC_011204.1 identified by match to protein family HMM PF01656; plasmid partition protein ParF 74330 439851000122 SeD_B0125 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid partition protein ParF YP_002213955.1 73710 R 439851 CDS YP_002213956.1 198244353 337..2799 1 NC_011205.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 2799 thrA 439851000123 thrA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional aspartokinase I/homoserine dehydrogenase I YP_002213956.1 337 D 439851 CDS YP_002213957.1 198244850 2801..3730 1 NC_011205.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 3730 thrB 439851000124 thrB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 homoserine kinase YP_002213957.1 2801 D 439851 CDS YP_002213958.1 198242395 3734..5020 1 NC_011205.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 5020 thrC 439851000125 thrC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 threonine synthase YP_002213958.1 3734 D 439851 CDS YP_002213959.1 198242886 complement(5114..5887) 1 NC_011205.1 identified by match to protein family HMM PF03883; hypothetical protein 5887 439851000126 SeD_A0005 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213959.1 5114 R 439851 CDS YP_002213960.1 198245613 complement(5966..7423) 1 NC_011205.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino-acid carrier protein AlsT 7423 439851000127 SeD_A0006 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 amino-acid carrier protein AlsT YP_002213960.1 5966 R 439851 CDS YP_002213961.1 198241895 7665..8618 1 NC_011205.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874; transaldolase B 8618 tal2 439851000128 tal2 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transaldolase B YP_002213961.1 7665 D 439851 CDS YP_002213962.1 198244752 8729..9319 1 NC_011205.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 9319 mogA 439851000129 mogA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molybdenum cofactor biosynthesis protein MogA YP_002213962.1 8729 D 439851 CDS YP_002213963.1 198245990 complement(9376..9942) 1 NC_011205.1 identified by match to protein family HMM PF01184; hypothetical protein 9942 439851000130 SeD_A0009 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213963.1 9376 R 439851 CDS YP_002213964.1 198243756 complement(10092..10805) 1 NC_011205.1 identified by match to protein family HMM PF03667; hypothetical protein 10805 439851000131 SeD_A0010 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213964.1 10092 R 439851 CDS YP_002213965.1 198244504 complement(10841..11236) 1 NC_011205.1 hypothetical protein 11236 439851000132 SeD_A0011 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213965.1 10841 R 439851 CDS YP_002213966.1 198242776 11594..13510 1 NC_011205.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 13510 dnaK 439851000133 dnaK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molecular chaperone DnaK YP_002213966.1 11594 D 439851 CDS YP_002213967.1 198243023 13596..14735 1 NC_011205.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 14735 dnaJ 439851000134 dnaJ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molecular chaperone DnaJ YP_002213967.1 13596 D 439851 CDS YP_002213968.1 198245221 14847..14960 1 NC_011205.1 identified by glimmer; hypothetical protein 14960 439851000135 SeD_A0014 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213968.1 14847 D 439851 CDS YP_002213969.1 198245711 15016..15963 1 NC_011205.1 identified by match to protein family HMM PF00126; LysR family transcriptional regulator 15963 439851000136 SeD_A0015 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR family transcriptional regulator YP_002213969.1 15016 D 439851 CDS YP_002213970.1 198244921 16132..16434 1 NC_011205.1 bacteriophage protein 16434 439851000137 SeD_A0016 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bacteriophage protein YP_002213970.1 16132 D 439851 CDS YP_002213971.1 198243700 complement(16495..17028) 1 NC_011205.1 identified by match to protein family HMM PF05838; hypothetical protein 17028 439851000138 SeD_A0017 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213971.1 16495 R 439851 CDS YP_002213972.1 198241808 complement(17045..17488) 1 NC_011205.1 hypothetical protein 17488 439851000139 SeD_A0018 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213972.1 17045 R 439851 CDS YP_002213973.1 198242422 17869..19968 1 NC_011205.1 identified by match to protein family HMM PF00704; match to protein family HMM PF02839; exochitinase 19968 439851000140 SeD_A0019 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 exochitinase YP_002213973.1 17869 D 439851 CDS YP_002213974.1 198242908 20060..23056 1 NC_011205.1 hydroxymethyltransferase 23056 439851000141 SeD_A0020 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydroxymethyltransferase YP_002213974.1 20060 D 439851 CDS YP_002213975.1 198243657 23337..24041 1 NC_011205.1 hypothetical protein 24041 439851000142 SeD_A0021 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213975.1 23337 D 439851 CDS YP_002213976.1 198242187 24471..25013 1 NC_011205.1 identified by match to protein family HMM PF00419; fimbrial subunit 25013 439851000143 SeD_A0022 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial subunit YP_002213976.1 24471 D 439851 CDS YP_002213977.1 198242340 24973..25800 1 NC_011205.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC 25800 439851000144 SeD_A0023 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chaperone protein FimC YP_002213977.1 24973 D 439851 CDS YP_002213978.1 198245430 25805..28426 1 NC_011205.1 identified by match to protein family HMM PF00577; outer membrane usher protein FimD 28426 439851000145 SeD_A0024 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane usher protein FimD YP_002213978.1 25805 D 439851 CDS YP_002213979.1 198246163 28427..29434 1 NC_011205.1 identified by match to protein family HMM PF00419; mannose binding protein FimH 29434 439851000146 SeD_A0025 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 mannose binding protein FimH YP_002213979.1 28427 D 439851 CDS YP_002213980.1 198245849 29474..29980 1 NC_011205.1 identified by match to protein family HMM PF00419; fimbrial subunit 29980 439851000147 SeD_A0026 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial subunit YP_002213980.1 29474 D 439851 CDS YP_002213981.1 198245050 29996..30514 1 NC_011205.1 identified by match to protein family HMM PF00419; fimbrial subunit 30514 439851000148 SeD_A0027 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial subunit YP_002213981.1 29996 D 439851 CDS YP_002213982.1 198243542 30576..31211 1 NC_011205.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; fimbrial chaperone 31211 439851000149 SeD_A0028 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial chaperone YP_002213982.1 30576 D 439851 CDS YP_002213983.1 198245062 complement(32546..32995) 1 NC_011205.1 hypothetical protein 32995 439851000152 SeD_A0031 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213983.1 32546 R 439851 CDS YP_002213984.1 198244833 33365..34369 1 NC_011205.1 identified by match to protein family HMM PF00126; transcriptional regulator 34369 439851000153 SeD_A0032 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002213984.1 33365 D 439851 CDS YP_002213985.1 198244219 complement(34377..34817) 1 NC_011205.1 transcriptional regulator 34817 439851000154 SeD_A0033 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002213985.1 34377 R 439851 CDS YP_002213986.1 198245122 34829..34975 1 NC_011205.1 identified by glimmer; hypothetical protein 34975 439851000155 SeD_A0034 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213986.1 34829 D 439851 CDS YP_002213987.1 198242535 35340..37058 1 NC_011205.1 identified by match to protein family HMM PF05935; arylsulfotransferase 37058 439851000156 SeD_A0035 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arylsulfotransferase YP_002213987.1 35340 D 439851 CDS YP_002213988.1 198242289 complement(37104..38675) 1 NC_011205.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872; 5'-nucleotidase 38675 439851000157 SeD_A0036 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 5'-nucleotidase YP_002213988.1 37104 R 439851 CDS YP_002213989.1 198242182 complement(38774..39535) 1 NC_011205.1 identified by match to protein family HMM PF07135; outer membrane/hypothetical protein 39535 439851000158 SeD_A0037 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane/hypothetical protein YP_002213989.1 38774 R 439851 CDS YP_002213990.1 198243820 40129..41622 1 NC_011205.1 identified by match to protein family HMM PF00884; sulfatase 41622 439851000159 SeD_A0038 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfatase YP_002213990.1 40129 D 439851 CDS YP_002213991.1 198243215 41721..42911 1 NC_011205.1 identified by match to protein family HMM PF04055; chondroitin sulfate/heparin utilization regulation protein 42911 439851000160 SeD_A0039 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chondroitin sulfate/heparin utilization regulation protein YP_002213991.1 41721 D 439851 CDS YP_002213992.1 198244819 42936..44183 1 NC_011205.1 hypothetical protein 44183 439851000161 SeD_A0040 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213992.1 42936 D 439851 CDS YP_002213993.1 198244177 44310..46025 1 NC_011205.1 identified by match to protein family HMM PF05935; arylsulfotransferase 46025 439851000162 SeD_A0041 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arylsulfotransferase YP_002213993.1 44310 D 439851 CDS YP_002213994.1 198245761 46188..47354 1 NC_011205.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 47354 nhaA 439851000163 nhaA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pH-dependent sodium/proton antiporter YP_002213994.1 46188 D 439851 CDS YP_002213995.1 198242822 47416..48315 1 NC_011205.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 48315 nhaR 439851000164 nhaR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional activator NhaR YP_002213995.1 47416 D 439851 CDS YP_002213996.1 198242197 complement(48370..50409) 1 NC_011205.1 identified by match to protein family HMM PF01055; glycoside hydrolase, family 31 50409 439851000165 SeD_A0044 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycoside hydrolase, family 31 YP_002213996.1 48370 R 439851 CDS YP_002213997.1 198242992 complement(52278..52541) 1 NC_011205.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 52541 rpsT 439851000168 rpsT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S20 YP_002213997.1 52278 R 439851 CDS YP_002213998.1 198244672 52716..52862 1 NC_011205.1 hypothetical protein 52862 439851000169 SeD_A0048 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002213998.1 52716 D 439851 CDS YP_002213999.1 198244244 52870..53808 1 NC_011205.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 53808 ribF 439851000170 ribF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional riboflavin kinase/FMN adenylyltransferase YP_002213999.1 52870 D 439851 CDS YP_002214000.1 198245825 53817..56687 1 NC_011205.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 56687 ileS 439851000171 ileS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 isoleucyl-tRNA synthetase YP_002214000.1 53817 D 439851 CDS YP_002214001.1 198246069 56687..57187 1 NC_011205.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 57187 lspA 439851000172 lspA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein signal peptidase YP_002214001.1 56687 D 439851 CDS YP_002214002.1 198245423 57342..57791 1 NC_011205.1 identified by match to protein family HMM PF00254; FKBP-type peptidylprolyl isomerase 57791 fkpB 439851000173 fkpB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 FKBP-type peptidylprolyl isomerase YP_002214002.1 57342 D 439851 CDS YP_002214003.1 198242816 57794..58744 1 NC_011205.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 58744 ispH 439851000174 ispH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_002214003.1 57794 D 439851 CDS YP_002214004.1 198242213 complement(58856..59014) 1 NC_011205.1 identified by glimmer; hypothetical protein 59014 439851000175 SeD_A0054 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214004.1 58856 R 439851 CDS YP_002214005.1 198242945 60162..61082 1 NC_011205.1 catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 61082 439851000177 SeD_A0056 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonucleoside hydrolase RihC YP_002214005.1 60162 D 439851 CDS YP_002214006.1 198245736 complement(61104..61790) 1 NC_011205.1 identified by match to protein family HMM PF00072; transcriptional regulator CitB 61790 439851000178 SeD_A0057 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator CitB YP_002214006.1 61104 R 439851 CDS YP_002214007.1 198243185 complement(61792..63450) 1 NC_011205.1 identified by match to protein family HMM PF02518; sensor kinase DpiB 63450 439851000179 SeD_A0058 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sensor kinase DpiB YP_002214007.1 61792 R 439851 CDS YP_002214008.1 198242548 complement(63546..64847) 1 NC_011205.1 identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109; oxaloacetate decarboxylase beta chain 64847 439851000180 SeD_A0059 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxaloacetate decarboxylase beta chain YP_002214008.1 63546 R 439851 CDS YP_002214009.1 198242442 complement(64860..66632) 1 NC_011205.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 66632 oadA 439851000181 oadA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxaloacetate decarboxylase YP_002214009.1 64860 R 439851 CDS YP_002214010.1 198241866 complement(66648..66887) 1 NC_011205.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 66887 439851000182 SeD_A0061 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxaloacetate decarboxylase subunit gamma YP_002214010.1 66648 R 439851 CDS YP_002214011.1 198243689 complement(67046..68386) 1 NC_011205.1 identified by match to protein family HMM PF03390; match to protein family HMM TIGR00783; citrate-sodium symporter 68386 439851000183 SeD_A0062 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 citrate-sodium symporter YP_002214011.1 67046 R 439851 CDS YP_002214012.1 198243054 68643..69674 1 NC_011205.1 identified by match to protein family HMM PF00583; match to protein family HMM PF08218; match to protein family HMM TIGR00124; match to protein family HMM TIGR00125; [citrate (pro-3S)-lyase] ligase 69674 citC 439851000184 citC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 [citrate (pro-3S)-lyase] ligase YP_002214012.1 68643 D 439851 CDS YP_002214013.1 198244910 69704..69997 1 NC_011205.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 69997 citD 439851000185 citD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 citrate lyase subunit gamma YP_002214013.1 69704 D 439851 CDS YP_002214014.1 198244342 69994..70863 1 NC_011205.1 identified by match to protein family HMM PF03328; match to protein family HMM TIGR01588; citrate (pro-3S)-lyase subunit beta 70863 citE 439851000186 citE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 citrate (pro-3S)-lyase subunit beta YP_002214014.1 69994 D 439851 CDS YP_002214015.1 198246254 70874..72394 1 NC_011205.1 identified by match to protein family HMM PF04223; match to protein family HMM TIGR01584; citrate lyase subunit alpha 72394 citF 439851000187 citF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 citrate lyase subunit alpha YP_002214015.1 70874 D 439851 CDS YP_002214016.1 198245785 72412..72945 1 NC_011205.1 identified by match to protein family HMM PF03802; match to protein family HMM TIGR03124; holo-ACP synthase CitX 72945 citX 439851000188 citX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 holo-ACP synthase CitX YP_002214016.1 72412 D 439851 CDS YP_002214017.1 198242726 72923..73831 1 NC_011205.1 identified by match to protein family HMM PF01874; match to protein family HMM TIGR03125; triphosphoribosyl-dephospho-CoA synthase CitG 73831 citG 439851000189 citG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 triphosphoribosyl-dephospho-CoA synthase CitG YP_002214017.1 72923 D 439851 CDS YP_002214018.1 198242536 74011..74832 1 NC_011205.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 74832 dapB 439851000190 dapB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dihydrodipicolinate reductase YP_002214018.1 74011 D 439851 CDS YP_002214019.1 198242571 complement(74935..75057) 1 NC_011205.1 identified by glimmer; hypothetical protein 75057 439851000191 SeD_A0070 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214019.1 74935 R 439851 CDS YP_002214020.1 198245158 complement(75483..75638) 1 NC_011205.1 hypothetical protein 75638 439851000192 SeD_A0071 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214020.1 75483 R 439851 CDS YP_002214021.1 198242031 75696..76844 1 NC_011205.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 76844 carA 439851000193 carA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 carbamoyl phosphate synthase small subunit YP_002214021.1 75696 D 439851 CDS YP_002214022.1 198241932 76863..80090 1 NC_011205.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 80090 carB 439851000194 carB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 carbamoyl phosphate synthase large subunit YP_002214022.1 76863 D 439851 CDS YP_002214023.1 198243994 complement(80836..81432) 1 NC_011205.1 involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE 81432 439851000196 SeD_A0075 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 carnitine operon protein CaiE YP_002214023.1 80836 R 439851 CDS YP_002214024.1 198244072 complement(81542..82327) 1 NC_011205.1 catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase 82327 439851000197 SeD_A0076 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 carnitinyl-CoA dehydratase YP_002214024.1 81542 R 439851 CDS YP_002214025.1 198244202 complement(82381..83934) 1 NC_011205.1 identified by match to protein family HMM PF00501; crotonobetaine/carnitine-CoA ligase 83934 caiC 439851000198 caiC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 crotonobetaine/carnitine-CoA ligase YP_002214025.1 82381 R 439851 CDS YP_002214026.1 198246082 complement(83997..85268) 1 NC_011205.1 catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; crotonobetainyl-CoA:carnitine CoA-transferase 85268 439851000199 SeD_A0078 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 crotonobetainyl-CoA:carnitine CoA-transferase YP_002214026.1 83997 R 439851 CDS YP_002214027.1 198243212 complement(85326..86468) 1 NC_011205.1 catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase 86468 caiA 439851000200 caiA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 crotonobetainyl-CoA dehydrogenase YP_002214027.1 85326 R 439851 CDS YP_002214028.1 198245005 complement(86503..88020) 1 NC_011205.1 catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter 88020 caiT 439851000201 caiT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-carnitine/gamma-butyrobetaine antiporter YP_002214028.1 86503 R 439851 CDS YP_002214029.1 198242160 88248..88433 1 NC_011205.1 hypothetical protein 88433 439851000202 SeD_A0081 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214029.1 88248 D 439851 CDS YP_002214030.1 198242964 88501..89271 1 NC_011205.1 required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; electron transfer flavoprotein FixA 89271 fixA 439851000203 fixA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 electron transfer flavoprotein FixA YP_002214030.1 88501 D 439851 CDS YP_002214031.1 198242315 89287..90228 1 NC_011205.1 involved in electron transfer during carnitine metabolism; electron transfer flavoprotein FixB 90228 fixB 439851000204 fixB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 electron transfer flavoprotein FixB YP_002214031.1 89287 D 439851 CDS YP_002214032.1 198241975 90278..91564 1 NC_011205.1 FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; oxidoreductase FixC 91564 fixC 439851000205 fixC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxidoreductase FixC YP_002214032.1 90278 D 439851 CDS YP_002214033.1 198246083 91561..91848 1 NC_011205.1 4Fe-4S ferredoxin 91848 439851000206 SeD_A0085 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4Fe-4S ferredoxin YP_002214033.1 91561 D 439851 CDS YP_002214034.1 198245456 91929..93335 1 NC_011205.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; metabolite transport protein YaaU 93335 439851000207 SeD_A0086 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 metabolite transport protein YaaU YP_002214034.1 91929 D 439851 CDS YP_002214035.1 198245237 93424..93654 1 NC_011205.1 identified by match to protein family HMM PF06004; hypothetical protein 93654 439851000208 SeD_A0087 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214035.1 93424 D 439851 CDS YP_002214036.1 198244841 93754..94284 1 NC_011205.1 Required for full activity of KefC, a potassium-proton antiporter; glutathione-regulated potassium-efflux system ancillary protein KefF 94284 kefF 439851000209 kefF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione-regulated potassium-efflux system ancillary protein KefF YP_002214036.1 93754 D 439851 CDS YP_002214037.1 198246065 94277..96139 1 NC_011205.1 transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC 96139 439851000210 SeD_A0089 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione-regulated potassium-efflux system protein KefC YP_002214037.1 94277 D 439851 CDS YP_002214038.1 198245170 complement(96136..96261) 1 NC_011205.1 identified by glimmer; hypothetical protein 96261 439851000211 SeD_A0090 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214038.1 96136 R 439851 CDS YP_002214039.1 198242069 96338..96817 1 NC_011205.1 catalyzes the reduction of dihydrofolate to tetrahydrofolate; dihydrofolate reductase 96817 folA 439851000212 folA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dihydrofolate reductase YP_002214039.1 96338 D 439851 CDS YP_002214040.1 198242812 complement(96923..97771) 1 NC_011205.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 97771 apaH 439851000213 apaH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 diadenosine tetraphosphatase YP_002214040.1 96923 R 439851 CDS YP_002214041.1 198243323 complement(97782..98159) 1 NC_011205.1 protein associated with Co2+ and Mg2+ efflux; Apa G protein 98159 apaG 439851000214 apaG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Apa G protein YP_002214041.1 97782 R 439851 CDS YP_002214042.1 198244097 complement(98162..98983) 1 NC_011205.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 98983 ksgA 439851000215 ksgA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dimethyladenosine transferase YP_002214042.1 98162 R 439851 CDS YP_002214043.1 198244575 complement(98980..99969) 1 NC_011205.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 99969 pdxA 439851000216 pdxA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-hydroxythreonine-4-phosphate dehydrogenase YP_002214043.1 98980 R 439851 CDS YP_002214044.1 198244102 complement(99969..101255) 1 NC_011205.1 Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB; peptidyl-prolyl cis-trans isomerase SurA 101255 surA 439851000217 surA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidyl-prolyl cis-trans isomerase SurA YP_002214044.1 99969 R 439851 CDS YP_002214045.1 198242523 complement(101309..103669) 1 NC_011205.1 determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein 103669 imp 439851000218 imp Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 organic solvent tolerance protein YP_002214045.1 101309 R 439851 CDS YP_002214046.1 198243047 complement(103679..103840) 1 NC_011205.1 identified by glimmer; hypothetical protein 103840 439851000219 SeD_A0098 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214046.1 103679 R 439851 CDS YP_002214047.1 198243576 103923..104735 1 NC_011205.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 104735 djlA 439851000220 djlA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Dna-J like membrane chaperone protein YP_002214047.1 103923 D 439851 CDS YP_002214048.1 198244685 complement(104830..105489) 1 NC_011205.1 catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; 23S rRNA/tRNA pseudouridine synthase A 105489 439851000221 SeD_A0100 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 23S rRNA/tRNA pseudouridine synthase A YP_002214048.1 104830 R 439851 CDS YP_002214049.1 198245326 complement(105501..108407) 1 NC_011205.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 108407 rapA 439851000222 rapA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent helicase HepA YP_002214049.1 105501 R 439851 CDS YP_002214050.1 198245956 complement(108581..110932) 1 NC_011205.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 110932 439851000223 SeD_A0102 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA polymerase II YP_002214050.1 108581 R 439851 CDS YP_002214051.1 198242615 complement(110976..111689) 1 NC_011205.1 identified by match to protein family HMM PF02698; hypothetical protein 111689 439851000224 SeD_A0103 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214051.1 110976 R 439851 CDS YP_002214052.1 198242714 complement(112539..113234) 1 NC_011205.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 113234 araD 439851000226 araD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-ribulose-5-phosphate 4-epimerase YP_002214052.1 112539 R 439851 CDS YP_002214053.1 198243370 complement(113375..114877) 1 NC_011205.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 114877 araA 439851000227 araA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-arabinose isomerase YP_002214053.1 113375 R 439851 CDS YP_002214054.1 198243987 complement(114888..116597) 1 NC_011205.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 116597 araB 439851000228 araB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribulokinase YP_002214054.1 114888 R 439851 CDS YP_002214055.1 198244573 116937..117782 1 NC_011205.1 positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; DNA-binding transcriptional regulator AraC 117782 439851000229 SeD_A0108 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator AraC YP_002214055.1 116937 D 439851 CDS YP_002214056.1 198245108 117901..118668 1 NC_011205.1 identified by match to protein family HMM PF09335; hypothetical protein 118668 439851000230 SeD_A0109 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214056.1 117901 D 439851 CDS YP_002214057.1 198245925 complement(118707..119414) 1 NC_011205.1 with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine transporter ATP-binding subunit 119414 thiQ 439851000231 thiQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiamine transporter ATP-binding subunit YP_002214057.1 118707 R 439851 CDS YP_002214058.1 198245222 complement(119398..121008) 1 NC_011205.1 permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 121008 thiP 439851000232 thiP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiamine transporter membrane protein YP_002214058.1 119398 R 439851 CDS YP_002214059.1 198245931 complement(120984..121967) 1 NC_011205.1 part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit 121967 tbpA 439851000233 tbpA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiamine transporter substrate binding subunit YP_002214059.1 120984 R 439851 CDS YP_002214060.1 198245285 complement(122012..122131) 1 NC_011205.1 lipoprotein 122131 439851000234 SeD_A0114 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein YP_002214060.1 122012 R 439851 CDS YP_002214061.1 198242698 complement(122145..123803) 1 NC_011205.1 activates sgrS under glucose-phosphate stress conditions; transcriptional regulator SgrR 123803 sgrR 439851000235 sgrR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator SgrR YP_002214061.1 122145 R 439851 CDS YP_002214062.1 198244005 124338..124619 1 NC_011205.1 hypothetical protein 124619 439851000237 SeD_A0118 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214062.1 124338 D 439851 CDS YP_002214063.1 198243235 complement(124673..125278) 1 NC_011205.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 125278 leuD 439851000238 leuD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 isopropylmalate isomerase small subunit YP_002214063.1 124673 R 439851 CDS YP_002214064.1 198245083 complement(125289..126689) 1 NC_011205.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 126689 leuC 439851000239 leuC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 isopropylmalate isomerase large subunit YP_002214064.1 125289 R 439851 CDS YP_002214065.1 198244310 complement(126692..127783) 1 NC_011205.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 127783 leuB 439851000240 leuB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-isopropylmalate dehydrogenase YP_002214065.1 126692 R 439851 CDS YP_002214066.1 198244620 complement(127783..129354) 1 NC_011205.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 129354 leuA 439851000241 leuA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-isopropylmalate synthase YP_002214066.1 127783 R 439851 CDS YP_002214067.1 198244158 130185..131129 1 NC_011205.1 activator for leuABCD operon; member of LysR family of transcriptional activators; leucine transcriptional activator 131129 leuO 439851000242 leuO Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 leucine transcriptional activator YP_002214067.1 130185 D 439851 CDS YP_002214068.1 198245889 131421..133175 1 NC_011205.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; acetolactate synthase 3 catalytic subunit 133175 ilvB 439851000243 ilvB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetolactate synthase 3 catalytic subunit YP_002214068.1 131421 D 439851 CDS YP_002214069.1 198245359 133175..133669 1 NC_011205.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 133669 ilvH 439851000244 ilvH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetolactate synthase 3 regulatory subunit YP_002214069.1 133175 D 439851 CDS YP_002214070.1 198242108 133953..134957 1 NC_011205.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 134957 fruR 439851000245 fruR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator FruR YP_002214070.1 133953 D 439851 CDS YP_002214071.1 198243614 135563..136021 1 NC_011205.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 136021 mraZ 439851000246 mraZ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell division protein MraZ YP_002214071.1 135563 D 439851 CDS YP_002214072.1 198243393 136023..136964 1 NC_011205.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 136964 mraW 439851000247 mraW Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 S-adenosyl-methyltransferase MraW YP_002214072.1 136023 D 439851 CDS YP_002214073.1 198242976 136961..137326 1 NC_011205.1 membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL 137326 ftsL 439851000248 ftsL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell division protein FtsL YP_002214073.1 136961 D 439851 CDS YP_002214074.1 198245181 137342..139108 1 NC_011205.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; peptidoglycan synthetase FtsI 139108 ftsI 439851000249 ftsI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidoglycan synthetase FtsI YP_002214074.1 137342 D 439851 CDS YP_002214075.1 198245705 139095..140582 1 NC_011205.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 140582 murE 439851000250 murE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_002214075.1 139095 D 439851 CDS YP_002214076.1 198246066 140579..141937 1 NC_011205.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 141937 murF 439851000251 murF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_002214076.1 140579 D 439851 CDS YP_002214077.1 198244846 141931..143013 1 NC_011205.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 143013 mraY 439851000252 mraY Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_002214077.1 141931 D 439851 CDS YP_002214078.1 198243206 143016..144332 1 NC_011205.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 144332 murD 439851000253 murD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_002214078.1 143016 D 439851 CDS YP_002214079.1 198243819 144332..145576 1 NC_011205.1 integral membrane protein involved in stabilizing FstZ ring during cell division; cell division protein FtsW 145576 ftsW 439851000254 ftsW Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell division protein FtsW YP_002214079.1 144332 D 439851 CDS YP_002214080.1 198242206 145573..146640 1 NC_011205.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 146640 murG 439851000255 murG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_002214080.1 145573 D 439851 CDS YP_002214081.1 198242404 146759..148234 1 NC_011205.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 148234 murC 439851000256 murC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UDP-N-acetylmuramate--L-alanine ligase YP_002214081.1 146759 D 439851 CDS YP_002214082.1 198242528 148227..149084 1 NC_011205.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 149084 ddl 439851000257 ddl Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-alanine--D-alanine ligase YP_002214082.1 148227 D 439851 CDS YP_002214083.1 198243490 149086..149916 1 NC_011205.1 involved in septum formation; cell division protein FtsQ 149916 ftsQ 439851000258 ftsQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell division protein FtsQ YP_002214083.1 149086 D 439851 CDS YP_002214084.1 198245554 149913..151175 1 NC_011205.1 ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 151175 ftsA 439851000259 ftsA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell division protein FtsA YP_002214084.1 149913 D 439851 CDS YP_002214085.1 198242669 151236..152387 1 NC_011205.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 152387 ftsZ 439851000260 ftsZ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell division protein FtsZ YP_002214085.1 151236 D 439851 CDS YP_002214086.1 198244953 152488..153405 1 NC_011205.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 153405 lpxC 439851000261 lpxC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_002214086.1 152488 D 439851 CDS YP_002214087.1 198243171 154243..156948 1 NC_011205.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 156948 secA 439851000263 secA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 preprotein translocase subunit SecA YP_002214087.1 154243 D 439851 CDS YP_002214088.1 198244703 157100..157495 1 NC_011205.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00586; nucleoside triphosphate pyrophosphohydrolase 157495 439851000264 SeD_A0146 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nucleoside triphosphate pyrophosphohydrolase YP_002214088.1 157100 D 439851 CDS YP_002214089.1 198243518 complement(157529..158518) 1 NC_011205.1 identified by match to protein family HMM PF00248; aldo/keto reductase 158518 439851000265 SeD_A0147 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aldo/keto reductase YP_002214089.1 157529 R 439851 CDS YP_002214090.1 198242490 158622..159545 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 159545 439851000266 SeD_A0148 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR family transcriptional regulator YP_002214090.1 158622 D 439851 CDS YP_002214091.1 198242997 complement(159542..159733) 1 NC_011205.1 identified by match to protein family HMM PF03884; zinc-binding protein 159733 439851000267 SeD_A0149 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 zinc-binding protein YP_002214091.1 159542 R 439851 CDS YP_002214092.1 198242529 complement(159743..160486) 1 NC_011205.1 identified by match to protein family HMM PF07072; hypothetical protein 160486 439851000268 SeD_A0150 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214092.1 159743 R 439851 CDS YP_002214093.1 198245968 complement(160486..161106) 1 NC_011205.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 161106 coaE 439851000269 coaE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dephospho-CoA kinase YP_002214093.1 160486 R 439851 CDS YP_002214094.1 198245038 161332..162375 1 NC_011205.1 catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 162375 guaC 439851000270 guaC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 guanosine 5'-monophosphate oxidoreductase YP_002214094.1 161332 D 439851 CDS YP_002214095.1 198245628 complement(162406..163608) 1 NC_011205.1 identified by match to protein family HMM PF00482; type IV pilin biogenesis protein 163608 439851000271 SeD_A0154 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type IV pilin biogenesis protein YP_002214095.1 162406 R 439851 CDS YP_002214096.1 198244503 complement(163598..164983) 1 NC_011205.1 identified by match to protein family HMM PF00437; hypothetical protein 164983 439851000272 SeD_A0155 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214096.1 163598 R 439851 CDS YP_002214097.1 198245059 complement(164993..165430) 1 NC_011205.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; major pilin subunit 165430 439851000273 SeD_A0156 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 major pilin subunit YP_002214097.1 164993 R 439851 CDS YP_002214098.1 198242484 complement(165652..166545) 1 NC_011205.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; quinolinate phosphoribosyltransferase 166545 nadC 439851000274 nadC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 quinolinate phosphoribosyltransferase YP_002214098.1 165652 R 439851 CDS YP_002214099.1 198242926 166633..167196 1 NC_011205.1 identified by match to protein family HMM PF01510; N-acetyl-anhydromuranmyl-L-alanine amidase 167196 439851000275 SeD_A0158 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N-acetyl-anhydromuranmyl-L-alanine amidase YP_002214099.1 166633 D 439851 CDS YP_002214100.1 198241957 167193..168047 1 NC_011205.1 involved in regulation of beta-lactamase; signaling protein; regulatory protein AmpE 168047 439851000276 SeD_A0159 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 regulatory protein AmpE YP_002214100.1 167193 D 439851 CDS YP_002214101.1 198245039 complement(168139..169089) 1 NC_011205.1 identified by match to protein family HMM PF04616; alpha-N-arabinofuranosidase 169089 439851000277 SeD_A0160 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 alpha-N-arabinofuranosidase YP_002214101.1 168139 R 439851 CDS YP_002214102.1 198242461 complement(169089..170495) 1 NC_011205.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792; Na+/galactoside symporter 170495 439851000278 SeD_A0162 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Na+/galactoside symporter YP_002214102.1 169089 R 439851 CDS YP_002214103.1 198241990 170449..170574 1 NC_011205.1 identified by glimmer; hypothetical protein 170574 439851000279 SeD_A0161 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214103.1 170449 D 439851 CDS YP_002214104.1 198243004 complement(170659..172029) 1 NC_011205.1 identified by match to protein family HMM PF00324; aromatic amino acid transporter 172029 439851000280 SeD_A0163 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aromatic amino acid transporter YP_002214104.1 170659 R 439851 CDS YP_002214105.1 198242476 172595..173359 1 NC_011205.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 173359 pdhR 439851000281 pdhR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator PdhR YP_002214105.1 172595 D 439851 CDS YP_002214106.1 198244269 173519..176182 1 NC_011205.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 176182 aceE 439851000282 aceE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pyruvate dehydrogenase subunit E1 YP_002214106.1 173519 D 439851 CDS YP_002214107.1 198243655 176197..178086 1 NC_011205.1 E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 178086 aceF 439851000283 aceF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dihydrolipoamide acetyltransferase YP_002214107.1 176197 D 439851 CDS YP_002214108.1 198244895 178287..179711 1 NC_011205.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 179711 lpdA 439851000284 lpdA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dihydrolipoamide dehydrogenase YP_002214108.1 178287 D 439851 CDS YP_002214109.1 198244398 179798..179917 1 NC_011205.1 identified by glimmer; hypothetical protein 179917 439851000285 SeD_A0168 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214109.1 179798 D 439851 CDS YP_002214110.1 198246153 180000..180284 1 NC_011205.1 hypothetical protein 180284 439851000286 SeD_A0169 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214110.1 180000 D 439851 CDS YP_002214111.1 198243041 complement(180322..181113) 1 NC_011205.1 hypothetical protein 181113 439851000287 SeD_A0170 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214111.1 180322 R 439851 CDS YP_002214112.1 198242405 complement(181126..182751) 1 NC_011205.1 hypothetical protein 182751 439851000288 SeD_A0171 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214112.1 181126 R 439851 CDS YP_002214113.1 198241769 183140..185737 1 NC_011205.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 185737 acnB 439851000289 acnB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_002214113.1 183140 D 439851 CDS YP_002214114.1 198243795 complement(185777..186241) 1 NC_011205.1 might be involved in hypersensitivity to nitrofurzone; inner membrane protein 186241 439851000290 SeD_A0173 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002214114.1 185777 R 439851 CDS YP_002214115.1 198243029 complement(186659..186982) 1 NC_011205.1 low molecular weight phosphotyrosine protein phosphatase 186982 439851000291 SeD_A0174 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 low molecular weight phosphotyrosine protein phosphatase YP_002214115.1 186659 R 439851 CDS YP_002214116.1 198245043 187253..187615 1 NC_011205.1 identified by match to protein family HMM PF06062; hypothetical protein 187615 439851000292 SeD_A0175 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214116.1 187253 D 439851 CDS YP_002214117.1 198244320 187790..188803 1 NC_011205.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 188803 439851000293 SeD_A0176 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-keto-3-deoxygluconate permease YP_002214117.1 187790 D 439851 CDS YP_002214118.1 198245185 188800..190071 1 NC_011205.1 identified by match to protein family HMM PF07005; inner membrane protein 190071 439851000294 SeD_A0177 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002214118.1 188800 D 439851 CDS YP_002214119.1 198245576 190061..191044 1 NC_011205.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 191044 pdxA 439851000295 pdxA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-hydroxythreonine-4-phosphate dehydrogenase YP_002214119.1 190061 D 439851 CDS YP_002214120.1 198241927 191054..191821 1 NC_011205.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DeoR family transcriptional regulator 191821 439851000296 SeD_A0179 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DeoR family transcriptional regulator YP_002214120.1 191054 D 439851 CDS YP_002214121.1 198246015 complement(191851..192645) 1 NC_011205.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 192645 439851000297 SeD_A0180 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 S-adenosylmethionine decarboxylase YP_002214121.1 191851 R 439851 CDS YP_002214122.1 198242627 complement(192666..193526) 1 NC_011205.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 193526 speE 439851000298 speE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 spermidine synthase YP_002214122.1 192666 R 439851 CDS YP_002214123.1 198243104 complement(193633..193980) 1 NC_011205.1 hypothetical protein 193980 439851000299 SeD_A0182 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214123.1 193633 R 439851 CDS YP_002214124.1 198243647 194182..195792 1 NC_011205.1 laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; multicopper oxidase 195792 439851000300 SeD_A0183 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multicopper oxidase YP_002214124.1 194182 D 439851 CDS YP_002214125.1 198244140 complement(195870..198113) 1 NC_011205.1 identified by match to protein family HMM PF01011; match to protein family HMM TIGR03074; quinoprotein glucose dehydrogenase 198113 gcd 439851000301 gcd Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 quinoprotein glucose dehydrogenase YP_002214125.1 195870 R 439851 CDS YP_002214126.1 198245204 198466..199002 1 NC_011205.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 199002 hpt 439851000302 hpt Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypoxanthine phosphoribosyltransferase YP_002214126.1 198466 D 439851 CDS YP_002214127.1 198245647 complement(199060..199722) 1 NC_011205.1 catalyzes the interconversion of bicarbonate and carbon dioxide; carbonic anhydrase 199722 439851000303 SeD_A0186 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 carbonic anhydrase YP_002214127.1 199060 R 439851 CDS YP_002214128.1 198246149 199831..200757 1 NC_011205.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 200757 439851000304 SeD_A0187 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter ATP-binding protein YP_002214128.1 199831 D 439851 CDS YP_002214129.1 198242100 200754..201524 1 NC_011205.1 identified by match to protein family HMM PF01061; ABC transporter permease 201524 439851000305 SeD_A0188 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter permease YP_002214129.1 200754 D 439851 CDS YP_002214130.1 198243284 complement(201644..202723) 1 NC_011205.1 identified by match to protein family HMM PF00419; fimbrial protein precurosr 202723 439851000306 SeD_A0189 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial protein precurosr YP_002214130.1 201644 R 439851 CDS YP_002214131.1 198243400 complement(202732..205278) 1 NC_011205.1 identified by match to protein family HMM PF00577; outer membrane usher protein FimD 205278 439851000307 SeD_A0190 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane usher protein FimD YP_002214131.1 202732 R 439851 CDS YP_002214132.1 198243389 complement(205305..205988) 1 NC_011205.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC 205988 439851000308 SeD_A0191 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chaperone protein FimC YP_002214132.1 205305 R 439851 CDS YP_002214133.1 198243893 complement(206036..206575) 1 NC_011205.1 identified by match to protein family HMM PF00419; fimbrial subunit 206575 439851000309 SeD_A0192 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial subunit YP_002214133.1 206036 R 439851 CDS YP_002214134.1 198244058 complement(206790..206903) 1 NC_011205.1 identified by glimmer; hypothetical protein 206903 439851000310 SeD_A0193 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214134.1 206790 R 439851 CDS YP_002214135.1 198244834 206945..207385 1 NC_011205.1 identified by match to protein family HMM PF03610; PTS system transporter subunit IIA 207385 439851000311 SeD_A0194 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system transporter subunit IIA YP_002214135.1 206945 D 439851 CDS YP_002214136.1 198245891 207453..208676 1 NC_011205.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 208676 439851000312 SeD_A0195 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 polysaccharide deacetylase YP_002214136.1 207453 D 439851 CDS YP_002214137.1 198242710 complement(208683..209063) 1 NC_011205.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 209063 panD 439851000313 panD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aspartate alpha-decarboxylase YP_002214137.1 208683 R 439851 CDS YP_002214138.1 198243382 complement(209158..210012) 1 NC_011205.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 210012 panC 439851000314 panC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pantoate--beta-alanine ligase YP_002214138.1 209158 R 439851 CDS YP_002214139.1 198243907 complement(210138..210929) 1 NC_011205.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 210929 panB 439851000315 panB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_002214139.1 210138 R 439851 CDS YP_002214140.1 198243902 complement(211050..211529) 1 NC_011205.1 catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 211529 folK 439851000316 folK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_002214140.1 211050 R 439851 CDS YP_002214141.1 198245984 complement(211526..212839) 1 NC_011205.1 Polymerase that creates the 3' poly(A) tail found in some mRNA's; poly(A) polymerase 212839 pcnB 439851000317 pcnB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 poly(A) polymerase YP_002214141.1 211526 R 439851 CDS YP_002214142.1 198245792 complement(213085..214026) 1 NC_011205.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 214026 439851000318 SeD_A0201 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamyl-Q tRNA(Asp) synthetase YP_002214142.1 213085 R 439851 CDS YP_002214143.1 198244547 complement(214050..214505) 1 NC_011205.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420; RNA polymerase-binding transcription factor 214505 dksA 439851000319 dksA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RNA polymerase-binding transcription factor YP_002214143.1 214050 R 439851 CDS YP_002214144.1 198242553 complement(214682..215386) 1 NC_011205.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 215386 sfsA 439851000320 sfsA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sugar fermentation stimulation protein A YP_002214144.1 214682 R 439851 CDS YP_002214145.1 198245343 complement(215403..215933) 1 NC_011205.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258; 2'-5' RNA ligase 215933 439851000321 SeD_A0204 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2'-5' RNA ligase YP_002214145.1 215403 R 439851 CDS YP_002214146.1 198243727 215961..218435 1 NC_011205.1 similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB 218435 hrpB 439851000322 hrpB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent RNA helicase HrpB YP_002214146.1 215961 D 439851 CDS YP_002214147.1 198242626 218576..221098 1 NC_011205.1 bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell; penicillin-binding protein 1b 221098 mrcB 439851000323 mrcB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 penicillin-binding protein 1b YP_002214147.1 218576 D 439851 CDS YP_002214148.1 198243319 complement(221237..221377) 1 NC_011205.1 identified by glimmer; hypothetical protein 221377 439851000324 SeD_A0207 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214148.1 221237 R 439851 CDS YP_002214149.1 198243961 221469..223580 1 NC_011205.1 involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; ferrichrome outer membrane transporter 223580 fhuA 439851000325 fhuA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ferrichrome outer membrane transporter YP_002214149.1 221469 D 439851 CDS YP_002214150.1 198245556 223629..224426 1 NC_011205.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; iron-hydroxamate transporter ATP-binding subunit 224426 fhuC 439851000326 fhuC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 iron-hydroxamate transporter ATP-binding subunit YP_002214150.1 223629 D 439851 CDS YP_002214151.1 198245094 224426..225316 1 NC_011205.1 Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; iron-hydroxamate transporter substrate-binding subunit 225316 439851000327 SeD_A0210 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 iron-hydroxamate transporter substrate-binding subunit YP_002214151.1 224426 D 439851 CDS YP_002214152.1 198244879 225313..227370 1 NC_011205.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 227370 439851000328 SeD_A0211 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 iron-hydroxamate transporter permease subunit YP_002214152.1 225313 D 439851 CDS YP_002214153.1 198243245 complement(227558..227671) 1 NC_011205.1 identified by glimmer; hypothetical protein 227671 439851000329 SeD_A0212 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214153.1 227558 R 439851 CDS YP_002214154.1 198246019 complement(227774..227899) 1 NC_011205.1 identified by glimmer; hypothetical protein 227899 439851000330 SeD_A0213 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214154.1 227774 R 439851 CDS YP_002214155.1 198244279 228310..228870 1 NC_011205.1 identified by match to protein family HMM PF00419; fimbrial subunit 228870 439851000331 SeD_A0214 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial subunit YP_002214155.1 228310 D 439851 CDS YP_002214156.1 198242771 228956..231613 1 NC_011205.1 identified by match to protein family HMM PF00577; fimbrial usher protein 231613 439851000332 SeD_A0215 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial usher protein YP_002214156.1 228956 D 439851 CDS YP_002214157.1 198245513 231631..232383 1 NC_011205.1 identified by match to protein family HMM PF00345; chaperone protein PapD 232383 439851000333 SeD_A0216 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chaperone protein PapD YP_002214157.1 231631 D 439851 CDS YP_002214158.1 198241827 232402..232914 1 NC_011205.1 minor fimbrial subunit 232914 439851000334 SeD_A0217 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 minor fimbrial subunit YP_002214158.1 232402 D 439851 CDS YP_002214159.1 198242324 232911..233387 1 NC_011205.1 identified by match to protein family HMM PF00419; fimbrial subunit 233387 439851000335 SeD_A0218 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial subunit YP_002214159.1 232911 D 439851 CDS YP_002214160.1 198244162 233387..233917 1 NC_011205.1 identified by match to protein family HMM PF00419; minor fimbrial subunit StfG 233917 439851000336 SeD_A0219 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 minor fimbrial subunit StfG YP_002214160.1 233387 D 439851 CDS YP_002214161.1 198242660 233914..234756 1 NC_011205.1 hypothetical protein 234756 439851000337 SeD_A0220 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214161.1 233914 D 439851 CDS YP_002214162.1 198244305 complement(234864..236144) 1 NC_011205.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 236144 hemL 439851000338 hemL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamate-1-semialdehyde aminotransferase YP_002214162.1 234864 R 439851 CDS YP_002214163.1 198243476 236314..237735 1 NC_011205.1 Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein 237735 439851000340 SeD_A0223 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chloride channel protein YP_002214163.1 236314 D 439851 CDS YP_002214164.1 198242974 237817..238161 1 NC_011205.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 238161 yadR 439851000341 yadR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 iron-sulfur cluster insertion protein ErpA YP_002214164.1 237817 D 439851 CDS YP_002214165.1 198243681 complement(238262..238885) 1 NC_011205.1 identified by match to protein family HMM PF03458; hypothetical protein 238885 439851000342 SeD_A0225 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214165.1 238262 R 439851 CDS YP_002214166.1 198243001 complement(238922..239710) 1 NC_011205.1 solute binding component of the vitamin B12 transport system BtuCDF; vitamin B12-transporter protein BtuF 239710 439851000343 SeD_A0226 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 vitamin B12-transporter protein BtuF YP_002214166.1 238922 R 439851 CDS YP_002214167.1 198242662 complement(239715..240413) 1 NC_011205.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 240413 mtnN 439851000344 mtnN Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_002214167.1 239715 R 439851 CDS YP_002214168.1 198242011 240456..242015 1 NC_011205.1 forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 242015 dgt 439851000345 dgt Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 deoxyguanosinetriphosphate triphosphohydrolase YP_002214168.1 240456 D 439851 CDS YP_002214169.1 198246202 242145..243572 1 NC_011205.1 protease Do; required at high temperature; degrades damaged proteins; serine endoprotease 243572 degP 439851000346 degP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 serine endoprotease YP_002214169.1 242145 D 439851 CDS YP_002214170.1 198243155 243725..244882 1 NC_011205.1 regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization; carbohydrate diacid transcriptional activator CdaR 244882 439851000347 SeD_A0230 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 carbohydrate diacid transcriptional activator CdaR YP_002214170.1 243725 D 439851 CDS YP_002214171.1 198246109 complement(244939..247971) 1 NC_011205.1 identified by match to protein family HMM PF03272; viral enhancin protein 247971 439851000348 SeD_A0231 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 viral enhancin protein YP_002214171.1 244939 R 439851 CDS YP_002214172.1 198245432 complement(248157..248543) 1 NC_011205.1 hypothetical protein 248543 439851000349 SeD_A0232 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214172.1 248157 R 439851 CDS YP_002214173.1 198245072 248790..250091 1 NC_011205.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family transporter 250091 439851000350 SeD_A0233 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 major facilitator family transporter YP_002214173.1 248790 D 439851 CDS YP_002214174.1 198244458 complement(250127..250951) 1 NC_011205.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 250951 dapD 439851000351 dapD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_002214174.1 250127 R 439851 CDS YP_002214175.1 198245098 complement(250981..253653) 1 NC_011205.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 253653 glnD 439851000352 glnD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PII uridylyl-transferase YP_002214175.1 250981 R 439851 CDS YP_002214176.1 198244479 complement(253891..254685) 1 NC_011205.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 254685 map 439851000353 map Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methionine aminopeptidase YP_002214176.1 253891 R 439851 CDS YP_002214177.1 198243582 255136..255861 1 NC_011205.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 255861 rpsB 439851000355 rpsB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S2 YP_002214177.1 255136 D 439851 CDS YP_002214178.1 198243113 256119..256970 1 NC_011205.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 256970 tsf 439851000356 tsf Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 elongation factor Ts YP_002214178.1 256119 D 439851 CDS YP_002214179.1 198242567 257115..257840 1 NC_011205.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 257840 pyrH 439851000357 pyrH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 uridylate kinase YP_002214179.1 257115 D 439851 CDS YP_002214180.1 198242060 257987..258544 1 NC_011205.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 258544 frr 439851000358 frr Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribosome recycling factor YP_002214180.1 257987 D 439851 CDS YP_002214181.1 198243983 258598..259881 1 NC_011205.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 259881 dxr 439851000359 dxr Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_002214181.1 258598 D 439851 CDS YP_002214182.1 198244628 260194..260952 1 NC_011205.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 260952 uppS 439851000360 uppS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 undecaprenyl pyrophosphate synthase YP_002214182.1 260194 D 439851 CDS YP_002214183.1 198242689 260965..261822 1 NC_011205.1 catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; CDP-diglyceride synthase 261822 cdsA 439851000361 cdsA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 CDP-diglyceride synthase YP_002214183.1 260965 D 439851 CDS YP_002214184.1 198243349 261834..263186 1 NC_011205.1 catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; zinc metallopeptidase RseP 263186 rseP 439851000362 rseP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 zinc metallopeptidase RseP YP_002214184.1 261834 D 439851 CDS YP_002214185.1 198241995 263218..265632 1 NC_011205.1 part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor YaeT 265632 yaeT 439851000363 yaeT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein assembly factor YaeT YP_002214185.1 263218 D 439851 CDS YP_002214186.1 198242621 265755..266240 1 NC_011205.1 identified by match to protein family HMM PF03938; periplasmic chaperone 266240 skp 439851000364 skp Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 periplasmic chaperone YP_002214186.1 265755 D 439851 CDS YP_002214187.1 198245250 266244..267269 1 NC_011205.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 267269 lpxD 439851000365 lpxD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_002214187.1 266244 D 439851 CDS YP_002214188.1 198245833 267375..267830 1 NC_011205.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 267830 fabZ 439851000366 fabZ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 (3R)-hydroxymyristoyl-ACP dehydratase YP_002214188.1 267375 D 439851 CDS YP_002214189.1 198244535 267834..268622 1 NC_011205.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 268622 lpxA 439851000367 lpxA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UDP-N-acetylglucosamine acyltransferase YP_002214189.1 267834 D 439851 CDS YP_002214190.1 198242586 268622..269770 1 NC_011205.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 269770 lpxB 439851000368 lpxB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipid-A-disaccharide synthase YP_002214190.1 268622 D 439851 CDS YP_002214191.1 198243184 269767..270363 1 NC_011205.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 270363 rnhB 439851000369 rnhB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonuclease HII YP_002214191.1 269767 D 439851 CDS YP_002214192.1 198243100 270387..273869 1 NC_011205.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 273869 dnaE 439851000370 dnaE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA polymerase III subunit alpha YP_002214192.1 270387 D 439851 CDS YP_002214193.1 198242208 273882..274841 1 NC_011205.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 274841 accA 439851000371 accA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_002214193.1 273882 D 439851 CDS YP_002214194.1 198242676 275021..276784 1 NC_011205.1 identified by match to protein family HMM PF00182; match to protein family HMM PF00801; endochitinase 276784 439851000372 SeD_A0255 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 endochitinase YP_002214194.1 275021 D 439851 CDS YP_002214195.1 198245178 276860..279001 1 NC_011205.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; lysine decarboxylase, constitutive 279001 ldcC 439851000373 ldcC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lysine decarboxylase, constitutive YP_002214195.1 276860 D 439851 CDS YP_002214196.1 198246253 279057..279446 1 NC_011205.1 identified by match to protein family HMM PF00903; hypothetical protein 279446 439851000374 SeD_A0257 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214196.1 279057 D 439851 CDS YP_002214197.1 198244025 279509..280801 1 NC_011205.1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; tRNA(Ile)-lysidine synthetase 280801 tilS 439851000375 tilS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA(Ile)-lysidine synthetase YP_002214197.1 279509 D 439851 CDS YP_002214198.1 198244693 complement(280885..281079) 1 NC_011205.1 identified by match to protein family HMM PF07073; rof protein 281079 rof 439851000376 rof Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 rof protein YP_002214198.1 280885 R 439851 CDS YP_002214199.1 198242515 complement(281132..281332) 1 NC_011205.1 identified by match to protein family HMM PF06786; hypothetical protein 281332 439851000377 SeD_A0260 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214199.1 281132 R 439851 CDS YP_002214200.1 198245709 281530..282075 1 NC_011205.1 identified by match to protein family HMM PF07152; hypothetical protein 282075 439851000378 SeD_A0261 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214200.1 281530 D 439851 CDS YP_002214201.1 198243513 282072..282494 1 NC_011205.1 identified by match to protein family HMM PF00472; peptidyl-tRNA hydrolase domain protein 282494 439851000379 SeD_A0262 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidyl-tRNA hydrolase domain protein YP_002214201.1 282072 D 439851 CDS YP_002214202.1 198244299 282526..283227 1 NC_011205.1 identified by match to protein family HMM PF04170; lipoprotein involved with copper homeostasis and adhesion 283227 439851000380 SeD_A0263 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein involved with copper homeostasis and adhesion YP_002214202.1 282526 D 439851 CDS YP_002214203.1 198242516 complement(283301..285019) 1 NC_011205.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 285019 proS 439851000381 proS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 prolyl-tRNA synthetase YP_002214203.1 283301 R 439851 CDS YP_002214204.1 198243314 complement(285130..285870) 1 NC_011205.1 identified by match to protein family HMM PF01980; match to protein family HMM TIGR00104; hypothetical protein 285870 439851000382 SeD_A0265 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214204.1 285130 R 439851 CDS YP_002214205.1 198245530 complement(285834..286238) 1 NC_011205.1 outer membrane lipoprotein 286238 rcsF 439851000383 rcsF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane lipoprotein YP_002214205.1 285834 R 439851 CDS YP_002214206.1 198246027 complement(286357..287172) 1 NC_011205.1 identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363; DL-methionine transporter substrate-binding subunit 287172 metQ 439851000384 metQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DL-methionine transporter substrate-binding subunit YP_002214206.1 286357 R 439851 CDS YP_002214207.1 198244699 complement(287211..287864) 1 NC_011205.1 part of the MetNIQ methionine uptake system; DL-methionine transporter permease subunit 287864 metI 439851000385 metI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DL-methionine transporter permease subunit YP_002214207.1 287211 R 439851 CDS YP_002214208.1 198245017 complement(287857..288888) 1 NC_011205.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 288888 metN 439851000386 metN Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DL-methionine transporter ATP-binding subunit YP_002214208.1 287857 R 439851 CDS YP_002214209.1 198242937 289078..289644 1 NC_011205.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 289644 439851000387 SeD_A0270 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D,D-heptose 1,7-bisphosphate phosphatase YP_002214209.1 289078 D 439851 CDS YP_002214210.1 198243358 291898..292014 1 NC_011205.1 identified by glimmer; hypothetical protein 292014 439851000392 SeD_A0275 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214210.1 291898 D 439851 CDS YP_002214211.1 198243773 295905..296708 1 NC_011205.1 catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B 296708 dkgB 439851000395 dkgB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2,5-diketo-D-gluconate reductase B YP_002214211.1 295905 D 439851 CDS YP_002214212.1 198242091 complement(296729..297643) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 297643 439851000396 SeD_A0279 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR substrate binding domain-containing protein YP_002214212.1 296729 R 439851 CDS YP_002214213.1 198241891 297748..298923 1 NC_011205.1 identified by match to protein family HMM PF07690; inner membrane transport protein YdhP 298923 439851000397 SeD_A0280 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane transport protein YdhP YP_002214213.1 297748 D 439851 CDS YP_002214214.1 198244210 299055..299855 1 NC_011205.1 identified by match to protein family HMM PF03372; hypothetical protein 299855 439851000398 SeD_A0281 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214214.1 299055 D 439851 CDS YP_002214215.1 198245521 299933..300703 1 NC_011205.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; UbiE/COQ5 family methyltransferase 300703 439851000399 SeD_A0282 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UbiE/COQ5 family methyltransferase YP_002214215.1 299933 D 439851 CDS YP_002214216.1 198243785 complement(300759..301979) 1 NC_011205.1 catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall; membrane-bound lytic murein transglycosylase D 301979 mltD 439851000400 mltD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 membrane-bound lytic murein transglycosylase D YP_002214216.1 300759 R 439851 CDS YP_002214217.1 198244534 complement(302198..302953) 1 NC_011205.1 catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; hydroxyacylglutathione hydrolase 302953 gloB 439851000401 gloB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydroxyacylglutathione hydrolase YP_002214217.1 302198 R 439851 CDS YP_002214218.1 198243385 302988..303710 1 NC_011205.1 identified by match to protein family HMM PF08241; methyltransferase 303710 439851000402 SeD_A0285 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methyltransferase YP_002214218.1 302988 D 439851 CDS YP_002214219.1 198242273 complement(303707..304174) 1 NC_011205.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 304174 rnhA 439851000403 rnhA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonuclease H YP_002214219.1 303707 R 439851 CDS YP_002214220.1 198244203 304229..304969 1 NC_011205.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 304969 dnaQ 439851000404 dnaQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA polymerase III subunit epsilon YP_002214220.1 304229 D 439851 CDS YP_002214221.1 198245787 complement(305501..306556) 1 NC_011205.1 identified by match to protein family HMM PF06812; ImpA-related protein 306556 439851000406 SeD_A0289 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ImpA-related protein YP_002214221.1 305501 R 439851 CDS YP_002214222.1 198245445 complement(306567..307502) 1 NC_011205.1 identified by match to protein family HMM PF06996; SciB protein 307502 439851000407 SeD_A0290 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 SciB protein YP_002214222.1 306567 R 439851 CDS YP_002214223.1 198241906 complement(309412..309906) 1 NC_011205.1 identified by match to protein family HMM PF04965; hypothetical protein 309906 439851000409 SeD_A0292 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214223.1 309412 R 439851 CDS YP_002214224.1 198242047 complement(309903..310727) 1 NC_011205.1 identified by match to protein family HMM PF07024; SciE protein 310727 439851000410 SeD_A0293 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 SciE protein YP_002214224.1 309903 R 439851 CDS YP_002214225.1 198242192 complement(310714..311604) 1 NC_011205.1 hypothetical protein 311604 439851000411 SeD_A0294 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214225.1 310714 R 439851 CDS YP_002214226.1 198243880 311984..314623 1 NC_011205.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728; ATPase 314623 439851000412 SeD_A0295 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATPase YP_002214226.1 311984 D 439851 CDS YP_002214227.1 198244612 314723..315265 1 NC_011205.1 identified by match to protein family HMM PF05591; hypothetical protein 315265 439851000413 SeD_A0296 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214227.1 314723 D 439851 CDS YP_002214228.1 198243093 315289..316797 1 NC_011205.1 identified by match to protein family HMM PF05943; SciI protein 316797 439851000414 SeD_A0297 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 SciI protein YP_002214228.1 315289 D 439851 CDS YP_002214229.1 198243970 317071..317250 1 NC_011205.1 hypothetical protein 317250 439851000415 SeD_A0298 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214229.1 317071 D 439851 CDS YP_002214230.1 198244319 317263..317709 1 NC_011205.1 hypothetical protein 317709 439851000416 SeD_A0299 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214230.1 317263 D 439851 CDS YP_002214231.1 198244078 317961..318446 1 NC_011205.1 identified by match to protein family HMM PF05638; hemolysin-coregulated protein 318446 439851000417 SeD_A0300 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hemolysin-coregulated protein YP_002214231.1 317961 D 439851 CDS YP_002214232.1 198244689 318558..319049 1 NC_011205.1 SciN protein 319049 439851000418 SeD_A0301 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 SciN protein YP_002214232.1 318558 D 439851 CDS YP_002214233.1 198245302 319053..320396 1 NC_011205.1 identified by match to protein family HMM PF05936; hypothetical protein 320396 439851000419 SeD_A0302 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214233.1 319053 D 439851 CDS YP_002214234.1 198245916 320393..321697 1 NC_011205.1 identified by match to protein family HMM PF00691; hypothetical protein 321697 439851000420 SeD_A0303 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214234.1 320393 D 439851 CDS YP_002214235.1 198242259 321702..322475 1 NC_011205.1 inner membrane protein 322475 439851000421 SeD_A0304 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002214235.1 321702 D 439851 CDS YP_002214236.1 198242773 322753..323109 1 NC_011205.1 SciR protein 323109 439851000422 SeD_A0305 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 SciR protein YP_002214236.1 322753 D 439851 CDS YP_002214237.1 198242462 323143..327012 1 NC_011205.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761; SciS protein 327012 439851000423 SeD_A0306 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 SciS protein YP_002214237.1 323143 D 439851 CDS YP_002214238.1 198243222 327012..327800 1 NC_011205.1 hypothetical protein 327800 439851000424 SeD_A0307 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214238.1 327012 D 439851 CDS YP_002214239.1 198242568 327827..328213 1 NC_011205.1 hypothetical protein 328213 439851000425 SeD_A0308 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214239.1 327827 D 439851 CDS YP_002214240.1 198244209 328240..328758 1 NC_011205.1 hypothetical protein 328758 439851000426 SeD_A0309 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214240.1 328240 D 439851 CDS YP_002214241.1 198243551 329155..331344 1 NC_011205.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646; Rhs family protein 331344 439851000427 SeD_A0310 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Rhs family protein YP_002214241.1 329155 D 439851 CDS YP_002214242.1 198242189 331368..331814 1 NC_011205.1 identified by match to protein family HMM PF08786; hypothetical protein 331814 439851000428 SeD_A0311 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214242.1 331368 D 439851 CDS YP_002214243.1 198242250 335909..336346 1 NC_011205.1 hypothetical protein 336346 439851000430 SeD_A0313 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214243.1 335909 D 439851 CDS YP_002214244.1 198243887 complement(337233..337355) 1 NC_011205.1 identified by glimmer; hypothetical protein 337355 439851000432 SeD_A0315 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214244.1 337233 R 439851 CDS YP_002214245.1 198243279 complement(337601..337810) 1 NC_011205.1 hypothetical protein 337810 439851000433 SeD_A0316 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214245.1 337601 R 439851 CDS YP_002214246.1 198244314 337906..340680 1 NC_011205.1 identified by match to protein family HMM PF03527; match to protein family HMM PF05593; match to protein family HMM TIGR01643; Rhs family protein 340680 439851000434 SeD_A0317 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Rhs family protein YP_002214246.1 337906 D 439851 CDS YP_002214247.1 198244918 340677..341123 1 NC_011205.1 hypothetical protein 341123 439851000435 SeD_A0318 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214247.1 340677 D 439851 CDS YP_002214248.1 198242432 complement(341189..341446) 1 NC_011205.1 identified by match to protein family HMM PF08845; hypothetical protein 341446 439851000436 SeD_A0319 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214248.1 341189 R 439851 CDS YP_002214249.1 198243065 341508..341627 1 NC_011205.1 identified by glimmer; hypothetical protein 341627 439851000437 SeD_A0320 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214249.1 341508 D 439851 CDS YP_002214250.1 198246201 342075..342215 1 NC_011205.1 rhs core protein with extension 342215 439851000438 SeD_A0321 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 rhs core protein with extension YP_002214250.1 342075 D 439851 CDS YP_002214251.1 198241746 342886..343353 1 NC_011205.1 hypothetical protein 343353 439851000439 SeD_A0322 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214251.1 342886 D 439851 CDS YP_002214252.1 198245526 complement(344014..344256) 1 NC_011205.1 hypothetical protein 344256 439851000441 SeD_A0324 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214252.1 344014 R 439851 CDS YP_002214253.1 198243691 complement(344451..344600) 1 NC_011205.1 hypothetical protein 344600 439851000442 SeD_A0325 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214253.1 344451 R 439851 CDS YP_002214254.1 198245974 345775..345903 1 NC_011205.1 identified by glimmer; hypothetical protein 345903 439851000444 SeD_A0327 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214254.1 345775 D 439851 CDS YP_002214255.1 198245177 complement(346401..346523) 1 NC_011205.1 identified by glimmer; hypothetical protein 346523 439851000445 SeD_A0328 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214255.1 346401 R 439851 CDS YP_002214256.1 198245015 347186..349696 1 NC_011205.1 identified by match to protein family HMM PF00577; outer-membrane fimbrial usher protein 349696 439851000447 SeD_A0330 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer-membrane fimbrial usher protein YP_002214256.1 347186 D 439851 CDS YP_002214257.1 198243988 349718..350188 1 NC_011205.1 identified by match to protein family HMM PF05775; fimbrial structural subunit 350188 439851000448 SeD_A0331 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial structural subunit YP_002214257.1 349718 D 439851 CDS YP_002214258.1 198243221 350596..351417 1 NC_011205.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 351417 439851000449 SeD_A0332 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 polysaccharide deacetylase YP_002214258.1 350596 D 439851 CDS YP_002214259.1 198242538 351898..352029 1 NC_011205.1 hypothetical protein 352029 439851000450 SeD_A0333 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214259.1 351898 D 439851 CDS YP_002214260.1 198241903 352232..353179 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator SinR 353179 439851000451 SeD_A0334 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR family transcriptional regulator SinR YP_002214260.1 352232 D 439851 CDS YP_002214261.1 198244187 complement(353518..354237) 1 NC_011205.1 adhesin 354237 439851000452 SeD_A0335 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 adhesin YP_002214261.1 353518 R 439851 CDS YP_002214262.1 198246075 complement(354380..354499) 1 NC_011205.1 hypothetical protein 354499 439851000453 SeD_A0336 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214262.1 354380 R 439851 CDS YP_002214263.1 198245867 complement(354568..354975) 1 NC_011205.1 identified by match to protein family HMM PF07813; periplasmic protein 354975 439851000454 SeD_A0337 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 periplasmic protein YP_002214263.1 354568 R 439851 CDS YP_002214264.1 198245233 complement(355285..356052) 1 NC_011205.1 identified by match to protein family HMM PF00795; hypothetical protein 356052 439851000455 SeD_A0338 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214264.1 355285 R 439851 CDS YP_002214265.1 198242188 358845..359423 1 NC_011205.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 359423 gmhA 439851000457 gmhA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoheptose isomerase YP_002214265.1 358845 D 439851 CDS YP_002214266.1 198243861 359636..360403 1 NC_011205.1 identified by match to protein family HMM PF00310; glutamine amidotransferase, class II 360403 439851000458 SeD_A0341 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamine amidotransferase, class II YP_002214266.1 359636 D 439851 CDS YP_002214267.1 198244473 complement(360374..361114) 1 NC_011205.1 identified by match to protein family HMM PF06104; hypothetical protein 361114 439851000459 SeD_A0342 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214267.1 360374 R 439851 CDS YP_002214268.1 198245459 361364..362419 1 NC_011205.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 362419 439851000460 SeD_A0343 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA polymerase IV YP_002214268.1 361364 D 439851 CDS YP_002214269.1 198244285 362638..363777 1 NC_011205.1 mutations in this gene result in a compromised ability for drug-inducible mexXY expression; expression is inducible by the same ribosome-targeting agents that induce mexXY; hypothetical protein 363777 439851000461 SeD_A0344 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214269.1 362638 D 439851 CDS YP_002214270.1 198241865 363774..364388 1 NC_011205.1 similar to release factor 1 and 2; peptide chain release factor-like protein 364388 prfH 439851000462 prfH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptide chain release factor-like protein YP_002214270.1 363774 D 439851 CDS YP_002214271.1 198245847 complement(364543..366000) 1 NC_011205.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893; aminoacyl-histidine dipeptidase 366000 pepD 439851000463 pepD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aminoacyl-histidine dipeptidase YP_002214271.1 364543 R 439851 CDS YP_002214272.1 198245336 366249..366707 1 NC_011205.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 366707 gpt 439851000464 gpt Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 xanthine-guanine phosphoribosyltransferase YP_002214272.1 366249 D 439851 CDS YP_002214273.1 198242674 366796..368040 1 NC_011205.1 forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein 368040 frsA 439851000465 frsA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fermentation/respiration switch protein YP_002214273.1 366796 D 439851 CDS YP_002214274.1 198244084 368098..368499 1 NC_011205.1 involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; DNA-binding transcriptional regulator Crl 368499 439851000466 SeD_A0349 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator Crl YP_002214274.1 368098 D 439851 CDS YP_002214275.1 198245965 complement(368550..369602) 1 NC_011205.1 identified by match to protein family HMM PF00267; outer membrane phosphoporin protein E 369602 439851000467 SeD_A0351 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane phosphoporin protein E YP_002214275.1 368550 R 439851 CDS YP_002214276.1 198243920 369565..369681 1 NC_011205.1 identified by glimmer; hypothetical protein 369681 439851000468 SeD_A0350 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214276.1 369565 D 439851 CDS YP_002214277.1 198242624 369886..370989 1 NC_011205.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 370989 proB 439851000470 proB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gamma-glutamyl kinase YP_002214277.1 369886 D 439851 CDS YP_002214278.1 198242275 371001..372248 1 NC_011205.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 372248 proA 439851000471 proA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gamma-glutamyl phosphate reductase YP_002214278.1 371001 D 439851 CDS YP_002214279.1 198242356 complement(372687..373214) 1 NC_011205.1 transposase 373214 439851000473 SeD_A0356 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transposase YP_002214279.1 372687 R 439851 CDS YP_002214280.1 198241997 complement(373211..373510) 1 NC_011205.1 identified by match to protein family HMM PF01527; IS3 transposase OrfA 373510 439851000474 SeD_A0357 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 IS3 transposase OrfA YP_002214280.1 373211 R 439851 CDS YP_002214281.1 198242014 374299..374451 1 NC_011205.1 hypothetical protein 374451 439851000476 SeD_A0359 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214281.1 374299 D 439851 CDS YP_002214282.1 198243650 374799..376031 1 NC_011205.1 identified by match to protein family HMM PF07690; permease 376031 439851000477 SeD_A0360 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 permease YP_002214282.1 374799 D 439851 CDS YP_002214283.1 198242899 376163..377584 1 NC_011205.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 377584 leuC 439851000478 leuC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 isopropylmalate isomerase large subunit YP_002214283.1 376163 D 439851 CDS YP_002214284.1 198245134 377586..378212 1 NC_011205.1 identified by match to protein family HMM PF00694; match to protein family HMM TIGR00171; 3-isopropylmalate dehydratase small subunit 378212 leuD 439851000479 leuD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-isopropylmalate dehydratase small subunit YP_002214284.1 377586 D 439851 CDS YP_002214285.1 198244527 378227..379105 1 NC_011205.1 identified by match to protein family HMM PF01557; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase 379105 439851000480 SeD_A0363 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase YP_002214285.1 378227 D 439851 CDS YP_002214286.1 198246223 379105..380019 1 NC_011205.1 identified by match to protein family HMM PF00561; haloacetate dehalogenase H-1 380019 439851000481 SeD_A0364 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 haloacetate dehalogenase H-1 YP_002214286.1 379105 D 439851 CDS YP_002214287.1 198245418 380053..381018 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 381018 439851000482 SeD_A0365 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR family transcriptional regulator YP_002214287.1 380053 D 439851 CDS YP_002214288.1 198243380 382169..382324 1 NC_011205.1 outer membrane protein 382324 439851000483 SeD_A0366 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein YP_002214288.1 382169 D 439851 CDS YP_002214289.1 198243859 complement(382372..383130) 1 NC_011205.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; fimbrial chaperone protein 383130 439851000484 SeD_A0367 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial chaperone protein YP_002214289.1 382372 R 439851 CDS YP_002214290.1 198242966 complement(383096..384421) 1 NC_011205.1 identified by match to protein family HMM PF00419; fimbrial usher 384421 439851000485 SeD_A0368 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial usher YP_002214290.1 383096 R 439851 CDS YP_002214291.1 198243463 complement(384426..386987) 1 NC_011205.1 identified by match to protein family HMM PF00577; outer membrane fimbrial usher protein 386987 439851000486 SeD_A0369 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane fimbrial usher protein YP_002214291.1 384426 R 439851 CDS YP_002214292.1 198242821 complement(386971..387732) 1 NC_011205.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; fimbrial chaperone protein 387732 439851000487 SeD_A0370 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial chaperone protein YP_002214292.1 386971 R 439851 CDS YP_002214293.1 198243200 complement(387794..388330) 1 NC_011205.1 identified by match to protein family HMM PF00419; fimbrial protein 388330 439851000488 SeD_A0371 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial protein YP_002214293.1 387794 R 439851 CDS YP_002214294.1 198246078 389282..389728 1 NC_011205.1 transmembrane regulator 389728 439851000489 SeD_A0372 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transmembrane regulator YP_002214294.1 389282 D 439851 CDS YP_002214295.1 198244806 390527..392077 1 NC_011205.1 identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein 392077 439851000491 SeD_A0374 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cyclic diguanylate phosphodiesterase (EAL) domain-containing protein YP_002214295.1 390527 D 439851 CDS YP_002214296.1 198245157 392177..392920 1 NC_011205.1 identified by match to protein family HMM PF00486; response regulator 392920 439851000492 SeD_A0375 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 response regulator YP_002214296.1 392177 D 439851 CDS YP_002214297.1 198244584 392893..393381 1 NC_011205.1 inner membrane protein 393381 439851000493 SeD_A0376 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002214297.1 392893 D 439851 CDS YP_002214298.1 198245377 393781..394305 1 NC_011205.1 identified by match to protein family HMM PF06316; match to protein family HMM TIGR03304; attachment invasion locus protein 394305 439851000494 SeD_A0377 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 attachment invasion locus protein YP_002214298.1 393781 D 439851 CDS YP_002214299.1 198244748 394449..395090 1 NC_011205.1 response regulator 395090 439851000495 SeD_A0378 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 response regulator YP_002214299.1 394449 D 439851 CDS YP_002214300.1 198244277 395101..395325 1 NC_011205.1 hypothetical protein 395325 439851000496 SeD_A0379 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214300.1 395101 D 439851 CDS YP_002214301.1 198245766 395359..395742 1 NC_011205.1 cytochrome c type biogenesis protein CycH 395742 439851000497 SeD_A0380 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome c type biogenesis protein CycH YP_002214301.1 395359 D 439851 CDS YP_002214302.1 198245239 complement(395812..397269) 1 NC_011205.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; outer membrane protein OprM 397269 439851000498 SeD_A0381 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein OprM YP_002214302.1 395812 R 439851 CDS YP_002214303.1 198243203 complement(397286..400453) 1 NC_011205.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; hypothetical protein 400453 439851000499 SeD_A0382 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214303.1 397286 R 439851 CDS YP_002214304.1 198242877 complement(400450..401676) 1 NC_011205.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; efflux transporter, RND family, MFP subunit 401676 439851000500 SeD_A0383 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 efflux transporter, RND family, MFP subunit YP_002214304.1 400450 R 439851 CDS YP_002214305.1 198244172 401953..404256 1 NC_011205.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 404256 439851000501 SeD_A0384 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 copper-translocating P-type ATPase YP_002214305.1 401953 D 439851 CDS YP_002214306.1 198243865 404253..404717 1 NC_011205.1 identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR02044; Cu(I)-responsive transcriptional regulator 404717 cueR 439851000502 cueR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Cu(I)-responsive transcriptional regulator YP_002214306.1 404253 D 439851 CDS YP_002214307.1 198244270 404795..404989 1 NC_011205.1 identified by match to protein family HMM PF00403; hypothetical protein 404989 439851000503 SeD_A0386 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214307.1 404795 D 439851 CDS YP_002214308.1 198243815 complement(405033..405188) 1 NC_011205.1 hypothetical protein 405188 439851000504 SeD_A0387 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214308.1 405033 R 439851 CDS YP_002214309.1 198243972 405282..406535 1 NC_011205.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily MFS_1 406535 439851000505 SeD_A0388 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 major facilitator superfamily MFS_1 YP_002214309.1 405282 D 439851 CDS YP_002214310.1 198243123 406724..408682 1 NC_011205.1 identified by match to protein family HMM PF01555; type III restriction-modification system StyLTI enzyme mod 408682 439851000506 SeD_A0389 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III restriction-modification system StyLTI enzyme mod YP_002214310.1 406724 D 439851 CDS YP_002214311.1 198244599 408695..411664 1 NC_011205.1 identified by match to protein family HMM PF04851; match to protein family HMM PF08774; type III restriction-modification system StyLTI enzyme res 411664 439851000507 SeD_A0390 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III restriction-modification system StyLTI enzyme res YP_002214311.1 408695 D 439851 CDS YP_002214312.1 198244899 412159..413562 1 NC_011205.1 identified by match to protein family HMM PF01654; cytochrome bd-II oxidase subunit 1 413562 439851000508 SeD_A0391 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome bd-II oxidase subunit 1 YP_002214312.1 412159 D 439851 CDS YP_002214313.1 198244418 413559..414569 1 NC_011205.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome D ubiquinol oxidase subunit II 414569 cydB 439851000509 cydB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome D ubiquinol oxidase subunit II YP_002214313.1 413559 D 439851 CDS YP_002214314.1 198246167 414569..414700 1 NC_011205.1 hypothetical protein 414700 439851000510 SeD_A0393 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214314.1 414569 D 439851 CDS YP_002214315.1 198245639 414906..415910 1 NC_011205.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 415910 439851000511 SeD_A0394 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 AraC family transcriptional regulator YP_002214315.1 414906 D 439851 CDS YP_002214316.1 198242367 416074..418164 1 NC_011205.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; ferrichrome-iron receptor 418164 439851000512 SeD_A0395 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ferrichrome-iron receptor YP_002214316.1 416074 D 439851 CDS YP_002214317.1 198241877 complement(418203..418835) 1 NC_011205.1 identified by match to protein family HMM PF01810; match to protein family HMM TIGR00949; transport protein 418835 439851000513 SeD_A0396 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transport protein YP_002214317.1 418203 R 439851 CDS YP_002214318.1 198242745 419067..419342 1 NC_011205.1 identified by match to protein family HMM PF07338; hypothetical protein 419342 439851000514 SeD_A0397 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214318.1 419067 D 439851 CDS YP_002214319.1 198242940 421277..422164 1 NC_011205.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 422164 prpB 439851000517 prpB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-methylisocitrate lyase YP_002214319.1 421277 D 439851 CDS YP_002214320.1 198243776 422287..423456 1 NC_011205.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 423456 prpC 439851000518 prpC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methylcitrate synthase YP_002214320.1 422287 D 439851 CDS YP_002214321.1 198241918 423494..424945 1 NC_011205.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 424945 prpD 439851000519 prpD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-methylcitrate dehydratase YP_002214321.1 423494 D 439851 CDS YP_002214322.1 198245504 424986..426872 1 NC_011205.1 catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 426872 prpE 439851000520 prpE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 propionyl-CoA synthetase YP_002214322.1 424986 D 439851 CDS YP_002214323.1 198246038 complement(426976..427950) 1 NC_011205.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 427950 hemB 439851000521 hemB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 delta-aminolevulinic acid dehydratase YP_002214323.1 426976 R 439851 CDS YP_002214324.1 198245058 428170..428289 1 NC_011205.1 identified by glimmer; hypothetical protein 428289 439851000522 SeD_A0405 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214324.1 428170 D 439851 CDS YP_002214325.1 198244533 complement(428280..428396) 1 NC_011205.1 identified by glimmer; hypothetical protein 428396 439851000523 SeD_A0406 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214325.1 428280 R 439851 CDS YP_002214326.1 198245524 429363..431408 1 NC_011205.1 identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; outer membrane autotransporter 431408 439851000524 SeD_A0407 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane autotransporter YP_002214326.1 429363 D 439851 CDS YP_002214327.1 198245095 complement(432162..433319) 1 NC_011205.1 this protein has no known enzymatic function; beta-lactam binding protein AmpH 433319 439851000526 SeD_A0409 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 beta-lactam binding protein AmpH YP_002214327.1 432162 R 439851 CDS YP_002214328.1 198245449 complement(433365..433523) 1 NC_011205.1 identified by glimmer; hypothetical protein 433523 439851000527 SeD_A0410 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214328.1 433365 R 439851 CDS YP_002214329.1 198246116 433666..434886 1 NC_011205.1 in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; transport protein 434886 smbA 439851000528 smbA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transport protein YP_002214329.1 433666 D 439851 CDS YP_002214330.1 198242503 434901..435995 1 NC_011205.1 identified by match to protein family HMM PF07759; outer membrane lipoprotein 435995 439851000529 SeD_A0412 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane lipoprotein YP_002214330.1 434901 D 439851 CDS YP_002214331.1 198243134 complement(436033..436341) 1 NC_011205.1 hypothetical protein 436341 439851000530 SeD_A0413 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214331.1 436033 R 439851 CDS YP_002214332.1 198243560 436609..436824 1 NC_011205.1 hypothetical protein 436824 439851000531 SeD_A0414 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214332.1 436609 D 439851 CDS YP_002214333.1 198244109 complement(436850..437944) 1 NC_011205.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 437944 ddl 439851000532 ddl Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-alanyl-alanine synthetase A YP_002214333.1 436850 R 439851 CDS YP_002214334.1 198245099 438022..438735 1 NC_011205.1 identified by match to protein family HMM PF06904; extensin family protein 438735 439851000533 SeD_A0416 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 extensin family protein YP_002214334.1 438022 D 439851 CDS YP_002214335.1 198242917 440412..440672 1 NC_011205.1 hypothetical protein 440672 439851000535 SeD_A0419 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214335.1 440412 D 439851 CDS YP_002214336.1 198243383 complement(440697..440858) 1 NC_011205.1 identified by glimmer; hypothetical protein 440858 439851000536 SeD_A0420 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214336.1 440697 R 439851 CDS YP_002214337.1 198242742 441025..441345 1 NC_011205.1 identified by match to protein family HMM PF07769; hypothetical protein 441345 439851000537 SeD_A0421 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214337.1 441025 D 439851 CDS YP_002214338.1 198242044 441437..442549 1 NC_011205.1 catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis; diguanylate cyclase AdrA 442549 adrA 439851000538 adrA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 diguanylate cyclase AdrA YP_002214338.1 441437 D 439851 CDS YP_002214339.1 198245907 complement(442564..443373) 1 NC_011205.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 443373 proC 439851000539 proC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pyrroline-5-carboxylate reductase YP_002214339.1 442564 R 439851 CDS YP_002214340.1 198245327 443407..443556 1 NC_011205.1 identified by glimmer; hypothetical protein 443556 439851000540 SeD_A0424 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214340.1 443407 D 439851 CDS YP_002214341.1 198244700 443513..443968 1 NC_011205.1 identified by match to protein family HMM PF02639; hypothetical protein 443968 439851000541 SeD_A0425 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214341.1 443513 D 439851 CDS YP_002214342.1 198244042 444170..444715 1 NC_011205.1 type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase II 444715 aroL 439851000542 aroL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 shikimate kinase II YP_002214342.1 444170 D 439851 CDS YP_002214343.1 198245452 444742..444933 1 NC_011205.1 hypothetical protein 444933 439851000543 SeD_A0427 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214343.1 444742 D 439851 CDS YP_002214344.1 198241965 445184..445861 1 NC_011205.1 identified by match to protein family HMM PF07302; hypothetical protein 445861 439851000544 SeD_A0428 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214344.1 445184 D 439851 CDS YP_002214345.1 198243474 445932..446216 1 NC_011205.1 identified by match to protein family HMM PF06865; hypothetical protein 446216 439851000545 SeD_A0429 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214345.1 445932 D 439851 CDS YP_002214346.1 198242983 complement(446254..447165) 1 NC_011205.1 Required for efficient pilin antigenic variation; recombination associated protein 447165 rdgC 439851000546 rdgC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 recombination associated protein YP_002214346.1 446254 R 439851 CDS YP_002214347.1 198242455 447291..448199 1 NC_011205.1 catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 448199 439851000547 SeD_A0431 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fructokinase YP_002214347.1 447291 D 439851 CDS YP_002214348.1 198241956 complement(448221..449447) 1 NC_011205.1 member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; MFS transport protein AraJ 449447 439851000548 SeD_A0432 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 MFS transport protein AraJ YP_002214348.1 448221 R 439851 CDS YP_002214349.1 198245472 complement(449566..452706) 1 NC_011205.1 with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; exonuclease SbcC 452706 439851000549 SeD_A0433 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 exonuclease SbcC YP_002214349.1 449566 R 439851 CDS YP_002214350.1 198245074 complement(452703..453905) 1 NC_011205.1 with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease SbcD 453905 439851000550 SeD_A0434 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 exonuclease SbcD YP_002214350.1 452703 R 439851 CDS YP_002214351.1 198244456 454119..454808 1 NC_011205.1 two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; transcriptional regulator PhoB 454808 phoB 439851000551 phoB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator PhoB YP_002214351.1 454119 D 439851 CDS YP_002214352.1 198243538 454878..456173 1 NC_011205.1 membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein 456173 phoR 439851000552 phoR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphate regulon sensor protein YP_002214352.1 454878 D 439851 CDS YP_002214353.1 198242891 complement(456386..456535) 1 NC_011205.1 hypothetical protein 456535 439851000553 SeD_A0437 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214353.1 456386 R 439851 CDS YP_002214354.1 198245117 456582..457901 1 NC_011205.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 457901 brnQ 439851000554 brnQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 branched-chain amino acid transport system II carrier protein YP_002214354.1 456582 D 439851 CDS YP_002214355.1 198244611 457916..459346 1 NC_011205.1 cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; proline-specific permease 459346 proY 439851000555 proY Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 proline-specific permease YP_002214355.1 457916 D 439851 CDS YP_002214356.1 198243953 complement(461397..461999) 1 NC_011205.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; peroxiredoxin-2 461999 439851000557 SeD_A0442 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peroxiredoxin-2 YP_002214356.1 461397 R 439851 CDS YP_002214357.1 198242692 complement(462209..462790) 1 NC_011205.1 Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; ACP phosphodieterase 462790 acpH 439851000558 acpH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ACP phosphodieterase YP_002214357.1 462209 R 439851 CDS YP_002214358.1 198245410 462884..463948 1 NC_011205.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 463948 queA 439851000559 queA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_002214358.1 462884 D 439851 CDS YP_002214359.1 198246141 464145..465272 1 NC_011205.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 465272 tgt 439851000560 tgt Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 queuine tRNA-ribosyltransferase YP_002214359.1 464145 D 439851 CDS YP_002214360.1 198244388 465295..465627 1 NC_011205.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 465627 yajC 439851000561 yajC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 preprotein translocase subunit YajC YP_002214360.1 465295 D 439851 CDS YP_002214361.1 198243006 465655..467502 1 NC_011205.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 467502 secD 439851000562 secD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 preprotein translocase subunit SecD YP_002214361.1 465655 D 439851 CDS YP_002214362.1 198246035 467513..468484 1 NC_011205.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 468484 secF 439851000563 secF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 preprotein translocase subunit SecF YP_002214362.1 467513 D 439851 CDS YP_002214363.1 198245760 468629..468994 1 NC_011205.1 identified by match to protein family HMM PF00903; glyoxalase/bleomycin resistance protein/dioxygenase 468994 439851000564 SeD_A0449 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glyoxalase/bleomycin resistance protein/dioxygenase YP_002214363.1 468629 D 439851 CDS YP_002214364.1 198245270 469020..469712 1 NC_011205.1 identified by match to protein family HMM PF08279; HTH domain-containing protein 469712 439851000565 SeD_A0450 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 HTH domain-containing protein YP_002214364.1 469020 D 439851 CDS YP_002214365.1 198244738 469882..470229 1 NC_011205.1 identified by match to protein family HMM PF01844; hypothetical protein 470229 439851000566 SeD_A0451 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214365.1 469882 D 439851 CDS YP_002214366.1 198241974 complement(470858..471721) 1 NC_011205.1 identified by match to protein family HMM PF03502; nucleoside-specific channel-forming protein tsx 471721 439851000568 SeD_A0453 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nucleoside-specific channel-forming protein tsx YP_002214366.1 470858 R 439851 CDS YP_002214367.1 198243197 complement(472021..472518) 1 NC_011205.1 hypothetical protein 472518 439851000569 SeD_A0454 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214367.1 472021 R 439851 CDS YP_002214368.1 198242730 472593..472739 1 NC_011205.1 identified by glimmer; hypothetical protein 472739 439851000570 SeD_A0455 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214368.1 472593 D 439851 CDS YP_002214369.1 198242149 472712..473161 1 NC_011205.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 473161 nrdR 439851000571 nrdR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator NrdR YP_002214369.1 472712 D 439851 CDS YP_002214370.1 198244553 473165..474268 1 NC_011205.1 riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 474268 ribD 439851000572 ribD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase YP_002214370.1 473165 D 439851 CDS YP_002214371.1 198244922 474357..474827 1 NC_011205.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 474827 ribH 439851000573 ribH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 6,7-dimethyl-8-ribityllumazine synthase YP_002214371.1 474357 D 439851 CDS YP_002214372.1 198243030 474848..475267 1 NC_011205.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 475267 nusB 439851000574 nusB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcription antitermination protein NusB YP_002214372.1 474848 D 439851 CDS YP_002214373.1 198243241 475346..476326 1 NC_011205.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 476326 thiL 439851000575 thiL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiamine monophosphate kinase YP_002214373.1 475346 D 439851 CDS YP_002214374.1 198246106 476313..476819 1 NC_011205.1 hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 476819 pgpA 439851000576 pgpA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphatidylglycerophosphatase A YP_002214374.1 476313 D 439851 CDS YP_002214375.1 198244486 complement(476923..477897) 1 NC_011205.1 identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family 477897 439851000577 SeD_A0462 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxidoreductase, aldo/keto reductase family YP_002214375.1 476923 R 439851 CDS YP_002214376.1 198245605 complement(477954..479816) 1 NC_011205.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 479816 dxs 439851000578 dxs Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 1-deoxy-D-xylulose-5-phosphate synthase YP_002214376.1 477954 R 439851 CDS YP_002214377.1 198246235 complement(479840..480739) 1 NC_011205.1 identified by match to protein family HMM PF00348; geranyltranstransferase 480739 ispA 439851000579 ispA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 geranyltranstransferase YP_002214377.1 479840 R 439851 CDS YP_002214378.1 198241834 complement(480740..480982) 1 NC_011205.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 480982 xseB 439851000580 xseB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 exodeoxyribonuclease VII small subunit YP_002214378.1 480740 R 439851 CDS YP_002214379.1 198242480 481192..482640 1 NC_011205.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 482640 thiI 439851000581 thiI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiamine biosynthesis protein ThiI YP_002214379.1 481192 D 439851 CDS YP_002214380.1 198244740 complement(482684..483481) 1 NC_011205.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR03255; 2-aminoethylphosphonate ABC transporter membrane component PhnV 483481 phnV 439851000582 phnV Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-aminoethylphosphonate ABC transporter membrane component PhnV YP_002214380.1 482684 R 439851 CDS YP_002214381.1 198244330 complement(483475..484344) 1 NC_011205.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR03226; 2-aminoethylphosphonate ABC transporter permease 484344 phnU 439851000583 phnU Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-aminoethylphosphonate ABC transporter permease YP_002214381.1 483475 R 439851 CDS YP_002214382.1 198242318 complement(484347..485456) 1 NC_011205.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR03258; 2-aminoethylphosphonate ABC transporter ATP-binding protein 485456 phnT 439851000584 phnT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-aminoethylphosphonate ABC transporter ATP-binding protein YP_002214382.1 484347 R 439851 CDS YP_002214383.1 198241864 complement(485462..486475) 1 NC_011205.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR03227; 2-aminoethylphosphonate ABC transporter 2-aminoethylphosphonate binding protein 486475 phnS 439851000585 phnS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-aminoethylphosphonate ABC transporter 2-aminoethylphosphonate binding protein YP_002214383.1 485462 R 439851 CDS YP_002214384.1 198246156 complement(486673..487392) 1 NC_011205.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; 2-aminoethylphosphonate transport, repressor 487392 439851000586 SeD_A0471 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-aminoethylphosphonate transport, repressor YP_002214384.1 486673 R 439851 CDS YP_002214385.1 198245667 487532..488635 1 NC_011205.1 catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 488635 phnW 439851000587 phnW Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-aminoethylphosphonate--pyruvate transaminase YP_002214385.1 487532 D 439851 CDS YP_002214386.1 198244558 488645..489454 1 NC_011205.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 489454 439851000588 SeD_A0473 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphonoacetaldehyde hydrolase YP_002214386.1 488645 D 439851 CDS YP_002214387.1 198246018 complement(489551..490141) 1 NC_011205.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383; DJ-1 family protein 490141 439851000589 SeD_A0474 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DJ-1 family protein YP_002214387.1 489551 R 439851 CDS YP_002214388.1 198243619 complement(490104..491015) 1 NC_011205.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 491015 panE 439851000590 panE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-dehydropantoate 2-reductase YP_002214388.1 490104 R 439851 CDS YP_002214389.1 198243120 491141..491632 1 NC_011205.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 491632 439851000591 SeD_A0476 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nucleotide-binding protein YP_002214389.1 491141 D 439851 CDS YP_002214390.1 198245030 complement(491679..493043) 1 NC_011205.1 identified by match to protein family HMM PF07690; inner membrane transport protein YajR 493043 439851000592 SeD_A0477 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane transport protein YajR YP_002214390.1 491679 R 439851 CDS YP_002214391.1 198244191 493568..495079 1 NC_011205.1 identified by match to protein family HMM PF08238; hypothetical protein 495079 439851000593 SeD_A0478 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214391.1 493568 D 439851 CDS YP_002214392.1 198242362 495091..496584 1 NC_011205.1 identified by match to protein family HMM PF08238; tetratricopeptide repeat protein 496584 439851000594 SeD_A0479 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tetratricopeptide repeat protein YP_002214392.1 495091 D 439851 CDS YP_002214393.1 198241832 complement(496666..497553) 1 NC_011205.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 497553 cyoE 439851000595 cyoE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 protoheme IX farnesyltransferase YP_002214393.1 496666 R 439851 CDS YP_002214394.1 198243661 complement(497568..497897) 1 NC_011205.1 identified by match to protein family HMM PF03626; match to protein family HMM TIGR02847; cytochrome o ubiquinol oxidase subunit IV 497897 cyoD 439851000596 cyoD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome o ubiquinol oxidase subunit IV YP_002214394.1 497568 R 439851 CDS YP_002214395.1 198243166 complement(497897..498511) 1 NC_011205.1 identified by match to protein family HMM PF00510; match to protein family HMM TIGR02842; cytochrome o ubiquinol oxidase subunit III 498511 cyoC 439851000597 cyoC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome o ubiquinol oxidase subunit III YP_002214395.1 497897 R 439851 CDS YP_002214396.1 198244876 complement(498501..500492) 1 NC_011205.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02843; cytochrome o ubiquinol oxidase subunit I 500492 cyoB 439851000598 cyoB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome o ubiquinol oxidase subunit I YP_002214396.1 498501 R 439851 CDS YP_002214397.1 198243660 complement(500503..501459) 1 NC_011205.1 identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433; cytochrome o ubiquinol oxidase subunit II 501459 cyoA 439851000599 cyoA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome o ubiquinol oxidase subunit II YP_002214397.1 500503 R 439851 CDS YP_002214398.1 198246145 complement(501706..501828) 1 NC_011205.1 identified by glimmer; hypothetical protein 501828 439851000600 SeD_A0485 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214398.1 501706 R 439851 CDS YP_002214399.1 198245630 complement(501912..503387) 1 NC_011205.1 in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; muropeptide transporter 503387 ampG 439851000601 ampG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 muropeptide transporter YP_002214399.1 501912 R 439851 CDS YP_002214400.1 198242918 504313..504630 1 NC_011205.1 positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress; transcriptional regulator BolA 504630 439851000603 SeD_A0488 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator BolA YP_002214400.1 504313 D 439851 CDS YP_002214401.1 198245040 504977..506275 1 NC_011205.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 506275 tig 439851000604 tig Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 trigger factor YP_002214401.1 504977 D 439851 CDS YP_002214402.1 198242637 506415..507146 1 NC_011205.1 identified by match to protein family HMM PF00574; match to protein family HMM TIGR00493; ATP-dependent Clp protease, proteolytic subunit ClpP 507146 clpP 439851000605 clpP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent Clp protease, proteolytic subunit ClpP YP_002214402.1 506415 D 439851 CDS YP_002214403.1 198242558 507398..508669 1 NC_011205.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 508669 clpX 439851000606 clpX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent protease ATP-binding subunit ClpX YP_002214403.1 507398 D 439851 CDS YP_002214404.1 198244399 508855..511209 1 NC_011205.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; DNA-binding ATP-dependent protease La 511209 lon 439851000607 lon Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding ATP-dependent protease La YP_002214404.1 508855 D 439851 CDS YP_002214405.1 198246187 511418..511690 1 NC_011205.1 histone-like DNA-binding protein; transcriptional regulator HU subunit beta 511690 hupB 439851000608 hupB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator HU subunit beta YP_002214405.1 511418 D 439851 CDS YP_002214406.1 198244647 511981..513852 1 NC_011205.1 identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase (rotamase D) 513852 ppiD 439851000609 ppiD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidyl-prolyl cis-trans isomerase (rotamase D) YP_002214406.1 511981 D 439851 CDS YP_002214407.1 198244144 514002..514376 1 NC_011205.1 identified by match to protein family HMM TIGR00426; competence protein ComEA 514376 439851000610 SeD_A0495 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 competence protein ComEA YP_002214407.1 514002 D 439851 CDS YP_002214408.1 198243913 514480..514878 1 NC_011205.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase superfamily protein 514878 439851000611 SeD_A0496 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thioesterase superfamily protein YP_002214408.1 514480 D 439851 CDS YP_002214409.1 198243409 complement(514984..515679) 1 NC_011205.1 YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC 515679 439851000612 SeD_A0497 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 queuosine biosynthesis protein QueC YP_002214409.1 514984 R 439851 CDS YP_002214410.1 198245703 517545..518363 1 NC_011205.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hypothetical protein 518363 439851000615 SeD_A0500 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214410.1 517545 D 439851 CDS YP_002214411.1 198245198 complement(518413..519468) 1 NC_011205.1 identified by match to protein family HMM PF00291; pyridoxal-5'-phosphate-dependent enzyme subunit beta 519468 439851000616 SeD_A0501 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pyridoxal-5'-phosphate-dependent enzyme subunit beta YP_002214411.1 518413 R 439851 CDS YP_002214412.1 198244718 519581..520039 1 NC_011205.1 identified by match to protein family HMM PF01037; glutamate uptake regulatory protein 520039 439851000617 SeD_A0502 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamate uptake regulatory protein YP_002214412.1 519581 D 439851 CDS YP_002214413.1 198244286 520080..521852 1 NC_011205.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug transporter membrane\ATP-binding components 521852 439851000618 SeD_A0503 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multidrug transporter membrane\ATP-binding components YP_002214413.1 520080 D 439851 CDS YP_002214414.1 198242112 521845..523626 1 NC_011205.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug transporter membrane\ATP-binding components 523626 439851000619 SeD_A0504 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multidrug transporter membrane\ATP-binding components YP_002214414.1 521845 D 439851 CDS YP_002214415.1 198243908 523660..523788 1 NC_011205.1 hypothetical protein 523788 439851000620 SeD_A0505 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214415.1 523660 D 439851 CDS YP_002214416.1 198245729 523839..524177 1 NC_011205.1 indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.; nitrogen regulatory protein P-II 2 524177 439851000621 SeD_A0506 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitrogen regulatory protein P-II 2 YP_002214416.1 523839 D 439851 CDS YP_002214417.1 198245268 524209..525495 1 NC_011205.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 525495 nrgA 439851000622 nrgA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ammonium transporter YP_002214417.1 524209 D 439851 CDS YP_002214418.1 198242813 complement(525595..526455) 1 NC_011205.1 identified by match to protein family HMM PF02551; match to protein family HMM TIGR00189; acyl-CoA thioesterase 526455 tesB 439851000623 tesB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acyl-CoA thioesterase YP_002214418.1 525595 R 439851 CDS YP_002214419.1 198245558 526670..527239 1 NC_011205.1 lipoprotein 527239 439851000624 SeD_A0509 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein YP_002214419.1 526670 D 439851 CDS YP_002214420.1 198242302 complement(527272..527661) 1 NC_011205.1 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA-[protein]-cysteine S-methyltransferase 527661 439851000625 SeD_A0510 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methylated-DNA-[protein]-cysteine S-methyltransferase YP_002214420.1 527272 R 439851 CDS YP_002214421.1 198242666 complement(527892..529442) 1 NC_011205.1 identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein 529442 439851000627 SeD_A0512 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cyclic diguanylate phosphodiesterase (EAL) domain-containing protein YP_002214421.1 527892 R 439851 CDS YP_002214422.1 198243201 529667..529927 1 NC_011205.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 529927 rpmE2 439851000628 rpmE2 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L31 YP_002214422.1 529667 D 439851 CDS YP_002214423.1 198243673 529933..530073 1 NC_011205.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 530073 rpmJ 439851000629 rpmJ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L36 YP_002214423.1 529933 D 439851 CDS YP_002214424.1 198245730 complement(530129..530599) 1 NC_011205.1 hypothetical protein 530599 439851000630 SeD_A0515 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214424.1 530129 R 439851 CDS YP_002214425.1 198244155 complement(530717..531268) 1 NC_011205.1 identified by match to protein family HMM PF00132; maltose O-acetyltransferase 531268 439851000631 SeD_A0516 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 maltose O-acetyltransferase YP_002214425.1 530717 R 439851 CDS YP_002214426.1 198242168 complement(531447..531665) 1 NC_011205.1 with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; hemolysin expression-modulating protein 531665 439851000632 SeD_A0517 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hemolysin expression-modulating protein YP_002214426.1 531447 R 439851 CDS YP_002214427.1 198242885 complement(531693..532067) 1 NC_011205.1 hypothetical protein 532067 439851000633 SeD_A0518 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214427.1 531693 R 439851 CDS YP_002214428.1 198246140 complement(532563..535712) 1 NC_011205.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; acriflavine resistance protein B 535712 acrB 439851000634 acrB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acriflavine resistance protein B YP_002214428.1 532563 R 439851 CDS YP_002214429.1 198242104 complement(535735..536928) 1 NC_011205.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; acriflavine resistance protein A 536928 acrA 439851000635 acrA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acriflavine resistance protein A YP_002214429.1 535735 R 439851 CDS YP_002214430.1 198245751 537070..537723 1 NC_011205.1 regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; DNA-binding transcriptional repressor AcrR 537723 acrR 439851000636 acrR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional repressor AcrR YP_002214430.1 537070 D 439851 CDS YP_002214431.1 198242010 537848..541204 1 NC_011205.1 small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 541204 439851000637 SeD_A0522 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 potassium efflux protein KefA YP_002214431.1 537848 D 439851 CDS YP_002214432.1 198244801 complement(541246..542181) 1 NC_011205.1 identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein 542181 439851000638 SeD_A0523 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214432.1 541246 R 439851 CDS YP_002214433.1 198245151 complement(542251..542418) 1 NC_011205.1 hypothetical protein 542418 439851000639 SeD_A0524 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214433.1 542251 R 439851 CDS YP_002214434.1 198244419 complement(542432..542959) 1 NC_011205.1 PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks; primosomal replication protein N'' 542959 439851000640 SeD_A0525 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 primosomal replication protein N'' YP_002214434.1 542432 R 439851 CDS YP_002214435.1 198244769 543028..543405 1 NC_011205.1 identified by match to protein family HMM PF04304; hypothetical protein 543405 439851000641 SeD_A0526 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214435.1 543028 D 439851 CDS YP_002214436.1 198243180 543558..544109 1 NC_011205.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 544109 apt 439851000642 apt Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 adenine phosphoribosyltransferase YP_002214436.1 543558 D 439851 CDS YP_002214437.1 198243935 544223..546151 1 NC_011205.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 546151 dnaX 439851000643 dnaX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA polymerase III subunits gamma and tau YP_002214437.1 544223 D 439851 CDS YP_002214438.1 198242833 546197..546526 1 NC_011205.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 546526 439851000644 SeD_A0530 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214438.1 546197 D 439851 CDS YP_002214439.1 198243466 546526..547131 1 NC_011205.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 547131 recR 439851000645 recR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 recombination protein RecR YP_002214439.1 546526 D 439851 CDS YP_002214440.1 198241949 547242..549116 1 NC_011205.1 molecular chaperone; heat shock protein 90 549116 htpG 439851000646 htpG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 heat shock protein 90 YP_002214440.1 547242 D 439851 CDS YP_002214441.1 198243606 549204..549341 1 NC_011205.1 identified by glimmer; hypothetical protein 549341 439851000647 SeD_A0533 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214441.1 549204 D 439851 CDS YP_002214442.1 198245571 549474..550118 1 NC_011205.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 550118 adk 439851000648 adk Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 adenylate kinase YP_002214442.1 549474 D 439851 CDS YP_002214443.1 198242600 550197..550337 1 NC_011205.1 hypothetical protein 550337 439851000649 SeD_A0535 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214443.1 550197 D 439851 CDS YP_002214444.1 198246199 550347..551309 1 NC_011205.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 551309 hemH 439851000650 hemH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ferrochelatase YP_002214444.1 550347 D 439851 CDS YP_002214445.1 198245713 complement(551306..552277) 1 NC_011205.1 identified by match to protein family HMM PF07859; acetyl esterase 552277 439851000651 SeD_A0537 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetyl esterase YP_002214445.1 551306 R 439851 CDS YP_002214446.1 198244821 552430..553734 1 NC_011205.1 identified by match to protein family HMM PF00294; inosine kinase 553734 gsk 439851000652 gsk Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inosine kinase YP_002214446.1 552430 D 439851 CDS YP_002214447.1 198244213 complement(553783..555459) 1 NC_011205.1 YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; cation:proton antiport protein 555459 439851000653 SeD_A0539 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cation:proton antiport protein YP_002214447.1 553783 R 439851 CDS YP_002214448.1 198243081 555537..555662 1 NC_011205.1 identified by glimmer; hypothetical protein 555662 439851000654 SeD_A0540 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214448.1 555537 D 439851 CDS YP_002214449.1 198242479 complement(555674..556894) 1 NC_011205.1 identified by match to protein family HMM PF07690; fosmidomycin resistance protein 556894 fsr 439851000655 fsr Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fosmidomycin resistance protein YP_002214449.1 555674 R 439851 CDS YP_002214450.1 198244120 557067..558719 1 NC_011205.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor 558719 ushA 439851000656 ushA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor YP_002214450.1 557067 D 439851 CDS YP_002214451.1 198243479 complement(558836..559315) 1 NC_011205.1 identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011; hypothetical protein 559315 ybaK 439851000657 ybaK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214451.1 558836 R 439851 CDS YP_002214452.1 198245089 complement(559517..560311) 1 NC_011205.1 identified by match to protein family HMM PF07446; GumN family protein 560311 439851000659 SeD_A0545 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GumN family protein YP_002214452.1 559517 R 439851 CDS YP_002214453.1 198244471 complement(560397..561224) 1 NC_011205.1 hypothetical protein 561224 439851000660 SeD_A0546 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214453.1 560397 R 439851 CDS YP_002214454.1 198242788 complement(561378..563879) 1 NC_011205.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper exporting ATPase 563879 copA 439851000661 copA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 copper exporting ATPase YP_002214454.1 561378 R 439851 CDS YP_002214455.1 198242253 563989..564405 1 NC_011205.1 activator of copper-responsive regulon genes; DNA-binding transcriptional regulator CueR 564405 cueR 439851000662 cueR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator CueR YP_002214455.1 563989 D 439851 CDS YP_002214456.1 198243760 complement(564406..564858) 1 NC_011205.1 identified by match to protein family HMM PF01957; hypothetical protein 564858 439851000663 SeD_A0549 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214456.1 564406 R 439851 CDS YP_002214457.1 198243283 complement(564855..565772) 1 NC_011205.1 identified by match to protein family HMM PF01145; hypothetical protein 565772 439851000664 SeD_A0550 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214457.1 564855 R 439851 CDS YP_002214458.1 198243437 565919..566596 1 NC_011205.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein YbbL 566596 439851000665 SeD_A0551 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter ATP-binding protein YbbL YP_002214458.1 565919 D 439851 CDS YP_002214459.1 198241812 566583..567362 1 NC_011205.1 identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245; hypothetical protein 567362 439851000666 SeD_A0552 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214459.1 566583 D 439851 CDS YP_002214460.1 198242491 complement(567448..568329) 1 NC_011205.1 identified by match to protein family HMM PF00085; thioredoxin domain-containing protein 568329 439851000667 SeD_A0553 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thioredoxin domain-containing protein YP_002214460.1 567448 R 439851 CDS YP_002214461.1 198245234 complement(568362..569132) 1 NC_011205.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase 569132 439851000668 SeD_A0554 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 short chain dehydrogenase YP_002214461.1 568362 R 439851 CDS YP_002214462.1 198246046 complement(569287..569901) 1 NC_011205.1 identified by match to protein family HMM PF00657; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 569901 439851000669 SeD_A0556 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 YP_002214462.1 569287 R 439851 CDS YP_002214463.1 198244920 569872..570558 1 NC_011205.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein YbbA 570558 439851000670 SeD_A0555 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter ATP-binding protein YbbA YP_002214463.1 569872 D 439851 CDS YP_002214464.1 198245013 570555..572969 1 NC_011205.1 identified by match to protein family HMM PF02687; efflux ABC transporter permease 572969 439851000671 SeD_A0557 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 efflux ABC transporter permease YP_002214464.1 570555 D 439851 CDS YP_002214465.1 198243252 573155..574288 1 NC_011205.1 outer membrane protein 574288 439851000672 SeD_A0558 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein YP_002214465.1 573155 D 439851 CDS YP_002214466.1 198242922 574545..575375 1 NC_011205.1 identified by match to protein family HMM PF03180; lipoprotein 575375 439851000673 SeD_A0559 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein YP_002214466.1 574545 D 439851 CDS YP_002214467.1 198242263 575412..576428 1 NC_011205.1 identified by match to protein family HMM PF00005; methionine import ATP-binding protein MetN 2 576428 439851000674 SeD_A0560 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methionine import ATP-binding protein MetN 2 YP_002214467.1 575412 D 439851 CDS YP_002214468.1 198244784 576421..577080 1 NC_011205.1 identified by match to protein family HMM PF00528; ABC transporter integral membrane protein 577080 439851000675 SeD_A0561 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter integral membrane protein YP_002214468.1 576421 D 439851 CDS YP_002214469.1 198243150 complement(577119..578213) 1 NC_011205.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 578213 ybbB 439851000676 ybbB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA 2-selenouridine synthase YP_002214469.1 577119 R 439851 CDS YP_002214470.1 198241753 complement(578283..579209) 1 NC_011205.1 activator of the allDC-ylbA operon involved in allantoin utilization; DNA-binding transcriptional activator AllS 579209 439851000677 SeD_A0563 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional activator AllS YP_002214470.1 578283 R 439851 CDS YP_002214471.1 198242520 579436..579918 1 NC_011205.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 579918 allA 439851000678 allA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ureidoglycolate hydrolase YP_002214471.1 579436 D 439851 CDS YP_002214472.1 198245657 579997..580815 1 NC_011205.1 regulates operons involved in the utilization of allantoin; DNA-binding transcriptional repressor AllR 580815 allR 439851000679 allR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional repressor AllR YP_002214472.1 579997 D 439851 CDS YP_002214473.1 198245781 580900..582681 1 NC_011205.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 582681 gcl 439851000680 gcl Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glyoxylate carboligase YP_002214473.1 580900 D 439851 CDS YP_002214474.1 198244905 582694..583470 1 NC_011205.1 identified by match to protein family HMM PF01261; match to protein family HMM TIGR03234; hydroxypyruvate isomerase 583470 hyi 439851000681 hyi Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydroxypyruvate isomerase YP_002214474.1 582694 D 439851 CDS YP_002214475.1 198243436 583571..584449 1 NC_011205.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01505; 2-hydroxy-3-oxopropionate reductase 584449 439851000682 SeD_A0568 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-hydroxy-3-oxopropionate reductase YP_002214475.1 583571 D 439851 CDS YP_002214476.1 198243148 584515..585762 1 NC_011205.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family transporter 585762 439851000683 SeD_A0569 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 major facilitator family transporter YP_002214476.1 584515 D 439851 CDS YP_002214477.1 198243659 585858..587312 1 NC_011205.1 identified by match to protein family HMM PF02133; match to protein family HMM TIGR00800; allantoin permease 587312 439851000684 SeD_A0570 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 allantoin permease YP_002214477.1 585858 D 439851 CDS YP_002214478.1 198242835 587391..588752 1 NC_011205.1 Plays a crucial role on both purine and pyrimidine metabolism; allantoinase 588752 allB 439851000685 allB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 allantoinase YP_002214478.1 587391 D 439851 CDS YP_002214479.1 198242175 588811..590109 1 NC_011205.1 identified by match to protein family HMM PF00860; purine permease YbbY 590109 439851000686 SeD_A0572 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 purine permease YbbY YP_002214479.1 588811 D 439851 CDS YP_002214480.1 198246050 590132..591280 1 NC_011205.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase II 591280 439851000687 SeD_A0573 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycerate kinase II YP_002214480.1 590132 D 439851 CDS YP_002214481.1 198245277 complement(591360..592145) 1 NC_011205.1 identified by match to protein family HMM PF05899; match to protein family HMM PF07883; match to protein family HMM TIGR03214; hypothetical protein 592145 439851000688 SeD_A0574 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214481.1 591360 R 439851 CDS YP_002214482.1 198244811 complement(592156..593391) 1 NC_011205.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 593391 allC 439851000689 allC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 allantoate amidohydrolase YP_002214482.1 592156 R 439851 CDS YP_002214483.1 198244036 complement(593413..594462) 1 NC_011205.1 identified by match to protein family HMM PF02615; match to protein family HMM TIGR03175; ureidoglycolate dehydrogenase 594462 allD 439851000690 allD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ureidoglycolate dehydrogenase YP_002214483.1 593413 R 439851 CDS YP_002214484.1 198243025 594778..596442 1 NC_011205.1 multicopy suppressor of dominant negative ftsH mutations; membrane protein FdrA 596442 439851000691 SeD_A0577 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 membrane protein FdrA YP_002214484.1 594778 D 439851 CDS YP_002214485.1 198243429 596452..597711 1 NC_011205.1 identified by match to protein family HMM PF06545; hypothetical protein 597711 439851000692 SeD_A0578 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214485.1 596452 D 439851 CDS YP_002214486.1 198242647 597744..598532 1 NC_011205.1 hypothetical protein 598532 439851000693 SeD_A0579 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214486.1 597744 D 439851 CDS YP_002214487.1 198242120 598536..599429 1 NC_011205.1 identified by match to protein family HMM PF00696; match to protein family HMM TIGR00746; carbamate kinase 599429 arcC 439851000694 arcC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 carbamate kinase YP_002214487.1 598536 D 439851 CDS YP_002214488.1 198244482 complement(599470..600537) 1 NC_011205.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 600537 purK 439851000695 purK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_002214488.1 599470 R 439851 CDS YP_002214489.1 198246119 complement(600534..601043) 1 NC_011205.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase, catalytic subunit 601043 purE 439851000696 purE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoribosylaminoimidazole carboxylase, catalytic subunit YP_002214489.1 600534 R 439851 CDS YP_002214490.1 198246044 complement(601161..601883) 1 NC_011205.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 601883 lpxH 439851000697 lpxH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UDP-2,3-diacylglucosamine hydrolase YP_002214490.1 601161 R 439851 CDS YP_002214491.1 198245545 complement(601886..602380) 1 NC_011205.1 (rotamase B); identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B (rotamase B) 602380 ppiB 439851000698 ppiB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidyl-prolyl cis-trans isomerase B (rotamase B) YP_002214491.1 601886 R 439851 CDS YP_002214492.1 198241911 602553..603938 1 NC_011205.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 603938 cysS 439851000699 cysS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cysteinyl-tRNA synthetase YP_002214492.1 602553 D 439851 CDS YP_002214493.1 198243695 complement(603983..604807) 1 NC_011205.1 outer membrane protein 604807 439851000700 SeD_A0586 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein YP_002214493.1 603983 R 439851 CDS YP_002214494.1 198244616 complement(604804..605241) 1 NC_011205.1 inner membrane protein 605241 439851000701 SeD_A0587 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002214494.1 604804 R 439851 CDS YP_002214495.1 198244546 complement(605234..605779) 1 NC_011205.1 identified by match to protein family HMM PF04307; hypothetical protein 605779 439851000702 SeD_A0588 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214495.1 605234 R 439851 CDS YP_002214496.1 198246056 complement(605906..606118) 1 NC_011205.1 hypothetical protein 606118 439851000703 SeD_A0589 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214496.1 605906 R 439851 CDS YP_002214497.1 198245416 complement(606120..606986) 1 NC_011205.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 606986 folD 439851000704 folD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_002214497.1 606120 R 439851 CDS YP_002214498.1 198243784 607533..608090 1 NC_011205.1 identified by match to protein family HMM PF00419; type-1 fimbrial protein subunit A 608090 439851000705 SeD_A0591 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type-1 fimbrial protein subunit A YP_002214498.1 607533 D 439851 CDS YP_002214499.1 198242962 608741..609433 1 NC_011205.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; chaperone protein FimC 609433 439851000708 SeD_A0594 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chaperone protein FimC YP_002214499.1 608741 D 439851 CDS YP_002214500.1 198245947 609464..612076 1 NC_011205.1 identified by match to protein family HMM PF00577; outer membrane usher protein SfmD 612076 439851000709 SeD_A0595 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane usher protein SfmD YP_002214500.1 609464 D 439851 CDS YP_002214501.1 198244251 612091..613098 1 NC_011205.1 mannose binding protein FimH 613098 439851000710 SeD_A0596 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 mannose binding protein FimH YP_002214501.1 612091 D 439851 CDS YP_002214502.1 198242118 613108..613626 1 NC_011205.1 identified by match to protein family HMM PF00419; fimbrial protein 613626 439851000711 SeD_A0597 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial protein YP_002214502.1 613108 D 439851 CDS YP_002214503.1 198246048 complement(613672..614304) 1 NC_011205.1 activates the production of the major fimbrae protein FimA; transcriptional regulator FimZ 614304 439851000712 SeD_A0598 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator FimZ YP_002214503.1 613672 R 439851 CDS YP_002214504.1 198243410 complement(614908..615630) 1 NC_011205.1 fimbriae Y protein 615630 439851000713 SeD_A0599 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbriae Y protein YP_002214504.1 614908 R 439851 CDS YP_002214505.1 198243916 complement(615591..615743) 1 NC_011205.1 identified by glimmer; hypothetical protein 615743 439851000714 SeD_A0600 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214505.1 615591 R 439851 CDS YP_002214506.1 198245183 complement(616121..616717) 1 NC_011205.1 fimbriae W protein 616717 439851000715 SeD_A0601 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbriae W protein YP_002214506.1 616121 R 439851 CDS YP_002214507.1 198242564 complement(617064..618227) 1 NC_011205.1 identified by match to protein family HMM PF00589; prophage DLP12 integrase 618227 439851000717 SeD_A0603 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 prophage DLP12 integrase YP_002214507.1 617064 R 439851 CDS YP_002214508.1 198243168 complement(618879..619190) 1 NC_011205.1 hypothetical protein 619190 439851000718 SeD_A0604 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214508.1 618879 R 439851 CDS YP_002214509.1 198244648 complement(619272..619553) 1 NC_011205.1 hypothetical protein 619553 439851000719 SeD_A0605 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214509.1 619272 R 439851 CDS YP_002214510.1 198241880 complement(619546..620628) 1 NC_011205.1 identified by match to protein family HMM PF04447; match to protein family HMM PF04448; Eaa protein 620628 439851000720 SeD_A0606 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Eaa protein YP_002214510.1 619546 R 439851 CDS YP_002214511.1 198243381 complement(620625..620918) 1 NC_011205.1 Gp43 620918 439851000721 SeD_A0607 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Gp43 YP_002214511.1 620625 R 439851 CDS YP_002214512.1 198242602 complement(621303..621884) 1 NC_011205.1 Eae protein 621884 439851000722 SeD_A0608 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Eae protein YP_002214512.1 621303 R 439851 CDS YP_002214513.1 198242087 complement(621881..622051) 1 NC_011205.1 hypothetical protein 622051 439851000723 SeD_A0609 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214513.1 621881 R 439851 CDS YP_002214514.1 198245901 complement(622062..622355) 1 NC_011205.1 anti-RecBCD protein 2 622355 439851000724 SeD_A0610 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anti-RecBCD protein 2 YP_002214514.1 622062 R 439851 CDS YP_002214515.1 198245309 complement(622928..623434) 1 NC_011205.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-stranded DNA-binding protein 623434 439851000725 SeD_A0611 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 single-stranded DNA-binding protein YP_002214515.1 622928 R 439851 CDS YP_002214516.1 198241831 complement(623435..624142) 1 NC_011205.1 identified by match to protein family HMM PF04098; gp49 624142 439851000726 SeD_A0612 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gp49 YP_002214516.1 623435 R 439851 CDS YP_002214517.1 198242550 complement(624151..624339) 1 NC_011205.1 hypothetical protein 624339 439851000727 SeD_A0613 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214517.1 624151 R 439851 CDS YP_002214518.1 198243514 complement(624781..624906) 1 NC_011205.1 hypothetical protein 624906 439851000729 SeD_A0615 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214518.1 624781 R 439851 CDS YP_002214519.1 198245913 complement(625165..625311) 1 NC_011205.1 identified by glimmer; hypothetical protein 625311 439851000730 SeD_A0616 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214519.1 625165 R 439851 CDS YP_002214520.1 198245283 complement(625524..625856) 1 NC_011205.1 gp54 625856 439851000731 SeD_A0617 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gp54 YP_002214520.1 625524 R 439851 CDS YP_002214521.1 198242703 625876..626073 1 NC_011205.1 identified by glimmer; hypothetical protein 626073 439851000732 SeD_A0618 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214521.1 625876 D 439851 CDS YP_002214522.1 198242063 626220..626429 1 NC_011205.1 hypothetical protein 626429 439851000733 SeD_A0619 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214522.1 626220 D 439851 CDS YP_002214523.1 198242229 complement(626465..627388) 1 NC_011205.1 hypothetical protein 627388 439851000734 SeD_A0620 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214523.1 626465 R 439851 CDS YP_002214524.1 198243827 complement(628192..628311) 1 NC_011205.1 identified by glimmer; hypothetical protein 628311 439851000735 SeD_A0622 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214524.1 628192 R 439851 CDS YP_002214525.1 198244193 628305..628421 1 NC_011205.1 identified by glimmer; hypothetical protein 628421 439851000736 SeD_A0621 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214525.1 628305 D 439851 CDS YP_002214526.1 198245770 628765..628884 1 NC_011205.1 transcriptional activator-regulatory protein 628884 439851000737 SeD_A0623 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional activator-regulatory protein YP_002214526.1 628765 D 439851 CDS YP_002214527.1 198246070 629058..629891 1 NC_011205.1 identified by match to protein family HMM PF04492; match to protein family HMM TIGR01610; DNA replication protein gp18 629891 439851000738 SeD_A0624 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA replication protein gp18 YP_002214527.1 629058 D 439851 CDS YP_002214528.1 198245428 629888..631264 1 NC_011205.1 identified by match to protein family HMM PF00772; match to protein family HMM PF03796; replicative DNA helicase 631264 439851000739 SeD_A0625 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 replicative DNA helicase YP_002214528.1 629888 D 439851 CDS YP_002214529.1 198241951 631320..631778 1 NC_011205.1 ninB protein 631778 439851000740 SeD_A0626 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ninB protein YP_002214529.1 631320 D 439851 CDS YP_002214530.1 198243892 631775..632647 1 NC_011205.1 identified by match to protein family HMM PF01507; phosphoadenosine phosphosulfate reductase family protein 632647 439851000741 SeD_A0627 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoadenosine phosphosulfate reductase family protein YP_002214530.1 631775 D 439851 CDS YP_002214531.1 198244588 632963..633139 1 NC_011205.1 hypothetical protein 633139 439851000742 SeD_A0628 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214531.1 632963 D 439851 CDS YP_002214532.1 198244153 634411..634548 1 NC_011205.1 gp23 634548 439851000743 SeD_A0629 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gp23 YP_002214532.1 634411 D 439851 CDS YP_002214533.1 198245876 634928..635254 1 NC_011205.1 identified by match to protein family HMM PF05106; match to protein family HMM TIGR01594; phage holin, lambda family 635254 439851000744 SeD_A0630 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage holin, lambda family YP_002214533.1 634928 D 439851 CDS YP_002214534.1 198245383 635238..635675 1 NC_011205.1 identified by match to protein family HMM PF00959; phage lysozyme 635675 439851000745 SeD_A0631 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage lysozyme YP_002214534.1 635238 D 439851 CDS YP_002214535.1 198242061 635672..636142 1 NC_011205.1 identified by match to protein family HMM PF03245; bacteriophage lysis protein 636142 439851000746 SeD_A0632 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bacteriophage lysis protein YP_002214535.1 635672 D 439851 CDS YP_002214536.1 198246148 complement(636377..636502) 1 NC_011205.1 identified by glimmer; hypothetical protein 636502 439851000747 SeD_A0633 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214536.1 636377 R 439851 CDS YP_002214537.1 198242397 636604..636885 1 NC_011205.1 hypothetical protein 636885 439851000748 SeD_A0634 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214537.1 636604 D 439851 CDS YP_008169820.1 528879889 637144..637386 1 NC_011205.1 hypothetical protein 637386 439851000749 SeD_A0635 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_008169820.1 637144 D 439851 CDS YP_002214538.1 198243488 637822..637944 1 NC_011205.1 identified by glimmer; hypothetical protein 637944 439851000750 SeD_A0636 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214538.1 637822 D 439851 CDS YP_002214539.1 198242982 638187..638675 1 NC_011205.1 terminase small subunit 638675 439851000751 SeD_A0637 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 terminase small subunit YP_002214539.1 638187 D 439851 CDS YP_002214540.1 198245578 638653..640152 1 NC_011205.1 identified by match to protein family HMM PF03237; terminase large subunit 640152 439851000752 SeD_A0638 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 terminase large subunit YP_002214540.1 638653 D 439851 CDS YP_002214541.1 198245102 640152..642329 1 NC_011205.1 portal protein 642329 439851000753 SeD_A0639 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 portal protein YP_002214541.1 640152 D 439851 CDS YP_002214542.1 198242722 642343..643254 1 NC_011205.1 identified by match to protein family HMM PF09306; scaffolding protein 643254 439851000754 SeD_A0640 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 scaffolding protein YP_002214542.1 642343 D 439851 CDS YP_002214543.1 198241921 643254..644546 1 NC_011205.1 coat protein 644546 439851000755 SeD_A0641 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 coat protein YP_002214543.1 643254 D 439851 CDS YP_002214544.1 198243729 644587..645147 1 NC_011205.1 hypothetical protein 645147 439851000756 SeD_A0642 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214544.1 644587 D 439851 CDS YP_002214545.1 198243098 645131..645631 1 NC_011205.1 Gp4 645631 439851000757 SeD_A0643 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Gp4 YP_002214545.1 645131 D 439851 CDS YP_002214546.1 198243159 645591..647009 1 NC_011205.1 gp10 647009 439851000758 SeD_A0644 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gp10 YP_002214546.1 645591 D 439851 CDS YP_002214547.1 198242358 647013..647714 1 NC_011205.1 gp26 647714 439851000759 SeD_A0645 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gp26 YP_002214547.1 647013 D 439851 CDS YP_002214548.1 198244462 647714..648169 1 NC_011205.1 hypothetical protein 648169 439851000760 SeD_A0646 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214548.1 647714 D 439851 CDS YP_002214549.1 198243561 648172..648861 1 NC_011205.1 DNA transfer protein 648861 439851000761 SeD_A0647 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA transfer protein YP_002214549.1 648172 D 439851 CDS YP_002214550.1 198245078 648872..650176 1 NC_011205.1 hypothetical protein 650176 439851000762 SeD_A0648 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214550.1 648872 D 439851 CDS YP_002214551.1 198244469 650176..652089 1 NC_011205.1 injection protein 652089 439851000763 SeD_A0649 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 injection protein YP_002214551.1 650176 D 439851 CDS YP_002214552.1 198246091 complement(652107..652436) 1 NC_011205.1 hypothetical protein 652436 439851000764 SeD_A0650 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214552.1 652107 R 439851 CDS YP_002214553.1 198245451 complement(652846..653025) 1 NC_011205.1 hypothetical protein 653025 439851000765 SeD_A0651 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214553.1 652846 R 439851 CDS YP_002214554.1 198241943 complement(653125..653376) 1 NC_011205.1 identified by match to protein family HMM PF03869; Mnt 653376 439851000766 SeD_A0652 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Mnt YP_002214554.1 653125 R 439851 CDS YP_002214555.1 198242543 653512..655515 1 NC_011205.1 identified by match to protein family HMM PF09008; match to protein family HMM PF09251; bifunctional tail protein 655515 439851000767 SeD_A0653 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional tail protein YP_002214555.1 653512 D 439851 CDS YP_002214556.1 198242887 complement(655574..657031) 1 NC_011205.1 hypothetical protein 657031 439851000768 SeD_A0654 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214556.1 655574 R 439851 CDS YP_002214557.1 198243524 complement(657021..657953) 1 NC_011205.1 identified by match to protein family HMM PF00535; bactoprenol glucosyl transferase 657953 439851000769 SeD_A0655 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bactoprenol glucosyl transferase YP_002214557.1 657021 R 439851 CDS YP_002214558.1 198245427 complement(657950..658312) 1 NC_011205.1 identified by match to protein family HMM PF04138; bactoprenol-linked glucose translocase 658312 439851000770 SeD_A0656 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bactoprenol-linked glucose translocase YP_002214558.1 657950 R 439851 CDS YP_002214559.1 198241931 complement(659796..661436) 1 NC_011205.1 inner membrane protein 661436 439851000772 SeD_A0658 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002214559.1 659796 R 439851 CDS YP_002214560.1 198242468 complement(661429..662355) 1 NC_011205.1 identified by match to protein family HMM PF00535; bactoprenol glucosyl transferase 662355 439851000773 SeD_A0659 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bactoprenol glucosyl transferase YP_002214560.1 661429 R 439851 CDS YP_002214561.1 198243457 complement(662352..662714) 1 NC_011205.1 identified by match to protein family HMM PF04138; bactoprenol-linked glucose translocase 662714 439851000774 SeD_A0660 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bactoprenol-linked glucose translocase YP_002214561.1 662352 R 439851 CDS YP_002214562.1 198241928 complement(663139..663384) 1 NC_011205.1 hypothetical protein 663384 439851000775 SeD_A0661 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214562.1 663139 R 439851 CDS YP_002214563.1 198241981 664013..664201 1 NC_011205.1 cation efflux system protein CusA 664201 439851000777 SeD_A0663 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cation efflux system protein CusA YP_002214563.1 664013 D 439851 CDS YP_002214564.1 198244555 complement(664252..665106) 1 NC_011205.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 665106 439851000778 SeD_A0664 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 AraC family transcriptional regulator YP_002214564.1 664252 R 439851 CDS YP_002214565.1 198245052 665322..666647 1 NC_011205.1 Involved in disulfide oxidoreductase activity and electron transport; pyridine nucleotide-disulfide oxidoreductase 666647 439851000779 SeD_A0665 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pyridine nucleotide-disulfide oxidoreductase YP_002214565.1 665322 D 439851 CDS YP_002214566.1 198242981 666804..667040 1 NC_011205.1 identified by match to protein family HMM PF07338; hypothetical protein 667040 439851000780 SeD_A0666 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214566.1 666804 D 439851 CDS YP_002214567.1 198243469 667053..667613 1 NC_011205.1 identified by match to protein family HMM PF04224; hypothetical protein 667613 439851000781 SeD_A0667 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214567.1 667053 D 439851 CDS YP_002214568.1 198243015 complement(667700..668875) 1 NC_011205.1 molecular chaperone DnaJ 668875 439851000782 SeD_A0668 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molecular chaperone DnaJ YP_002214568.1 667700 R 439851 CDS YP_002214569.1 198243499 669201..670595 1 NC_011205.1 identified by match to protein family HMM PF00324; phenylalanine transporter 670595 439851000783 SeD_A0669 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phenylalanine transporter YP_002214569.1 669201 D 439851 CDS YP_002214570.1 198241993 complement(670637..671884) 1 NC_011205.1 identified by match to protein family HMM PF00924; small conductance mechanosensitive ion channel transporter 671884 439851000784 SeD_A0670 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 small conductance mechanosensitive ion channel transporter YP_002214570.1 670637 R 439851 CDS YP_002214571.1 198242493 671911..672096 1 NC_011205.1 hypothetical protein 672096 439851000785 SeD_A0671 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214571.1 671911 D 439851 CDS YP_002214572.1 198245168 complement(674447..675100) 1 NC_011205.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 675100 439851000788 SeD_A0674 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dihydropteridine reductase YP_002214572.1 674447 R 439851 CDS YP_002214573.1 198242876 complement(675197..675565) 1 NC_011205.1 identified by match to protein family HMM PF04237; hypothetical protein 675565 439851000789 SeD_A0675 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214573.1 675197 R 439851 CDS YP_002214574.1 198242200 complement(675565..676146) 1 NC_011205.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 676146 439851000790 SeD_A0676 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 TetR family transcriptional regulator YP_002214574.1 675565 R 439851 CDS YP_002214575.1 198243860 676435..676776 1 NC_011205.1 identified by match to protein family HMM PF00165; transposon Tn10 TetD protein 676776 439851000791 SeD_A0677 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transposon Tn10 TetD protein YP_002214575.1 676435 D 439851 CDS YP_002214576.1 198244808 complement(676782..677006) 1 NC_011205.1 inner membrane protein 677006 439851000792 SeD_A0678 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002214576.1 676782 R 439851 CDS YP_002214577.1 198244224 complement(677097..678215) 1 NC_011205.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase 678215 439851000793 SeD_A0679 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 carboxylate-amine ligase YP_002214577.1 677097 R 439851 CDS YP_002214578.1 198245817 complement(678227..678931) 1 NC_011205.1 identified by match to protein family HMM PF01648; phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex 678931 439851000794 SeD_A0680 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex YP_002214578.1 678227 R 439851 CDS YP_002214579.1 198245596 complement(678978..681233) 1 NC_011205.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 681233 439851000795 SeD_A0681 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane receptor FepA YP_002214579.1 678978 R 439851 CDS YP_002214580.1 198245274 681422..682636 1 NC_011205.1 identified by match to protein family HMM PF00756; enterobactin/ferric enterobactin esterase 682636 439851000796 SeD_A0682 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 enterobactin/ferric enterobactin esterase YP_002214580.1 681422 D 439851 CDS YP_002214581.1 198242651 682667..682885 1 NC_011205.1 identified by match to protein family HMM PF03621; hypothetical protein 682885 439851000797 SeD_A0683 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214581.1 682667 D 439851 CDS YP_002214582.1 198242266 682882..686766 1 NC_011205.1 with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin; enterobactin synthase subunit F 686766 entF 439851000798 entF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 enterobactin synthase subunit F YP_002214582.1 682882 D 439851 CDS YP_002214583.1 198243900 687016..688152 1 NC_011205.1 part of the ferric enterobactin transport system; necessary for enetrobactin uptake; ferric enterobactin transport protein FepE 688152 439851000799 SeD_A0685 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ferric enterobactin transport protein FepE YP_002214583.1 687016 D 439851 CDS YP_002214584.1 198243585 complement(688205..688999) 1 NC_011205.1 with FepBDE is involved in the transport of ferric enterobactin; iron-enterobactin transporter ATP-binding protein 688999 439851000800 SeD_A0686 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 iron-enterobactin transporter ATP-binding protein YP_002214584.1 688205 R 439851 CDS YP_002214585.1 198242946 complement(688996..689985) 1 NC_011205.1 with FepBCD is involved in the transport of ferric enterobactin; iron-enterobactin transporter permease 689985 439851000801 SeD_A0687 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 iron-enterobactin transporter permease YP_002214585.1 688996 R 439851 CDS YP_002214586.1 198244793 complement(689985..690992) 1 NC_011205.1 with FepBCG is involved in the transport of ferric enterobactin; iron-enterobactin transporter membrane protein 690992 439851000802 SeD_A0688 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 iron-enterobactin transporter membrane protein YP_002214586.1 689985 R 439851 CDS YP_002214587.1 198244167 691103..692347 1 NC_011205.1 protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; enterobactin exporter EntS 692347 439851000803 SeD_A0689 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 enterobactin exporter EntS YP_002214587.1 691103 D 439851 CDS YP_002214588.1 198246142 complement(692410..693366) 1 NC_011205.1 with FepCDG is involved in the transport of ferric enterobactin; iron-enterobactin transporter periplasmic binding protein 693366 439851000804 SeD_A0690 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 iron-enterobactin transporter periplasmic binding protein YP_002214588.1 692410 R 439851 CDS YP_002214589.1 198245663 693675..694850 1 NC_011205.1 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; isochorismate synthase EntC 694850 439851000805 SeD_A0691 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 isochorismate synthase EntC YP_002214589.1 693675 D 439851 CDS YP_002214590.1 198245029 694860..696470 1 NC_011205.1 bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; enterobactin synthase subunit E 696470 entE 439851000806 entE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 enterobactin synthase subunit E YP_002214590.1 694860 D 439851 CDS YP_002214591.1 198243224 696484..697341 1 NC_011205.1 identified by match to protein family HMM PF00550; match to protein family HMM PF00857; isochorismatase 697341 439851000807 SeD_A0693 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 isochorismatase YP_002214591.1 696484 D 439851 CDS YP_002214592.1 198242911 697341..698096 1 NC_011205.1 catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; 2,3-dihydroxybenzoate-2,3-dehydrogenase 698096 439851000808 SeD_A0694 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2,3-dihydroxybenzoate-2,3-dehydrogenase YP_002214592.1 697341 D 439851 CDS YP_002214593.1 198242196 698099..698512 1 NC_011205.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 698512 439851000809 SeD_A0695 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214593.1 698099 D 439851 CDS YP_002214594.1 198241952 698694..700799 1 NC_011205.1 identified by match to protein family HMM PF02554; carbon starvation protein A 700799 cstA 439851000810 cstA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 carbon starvation protein A YP_002214594.1 698694 D 439851 CDS YP_002214595.1 198242487 700863..701060 1 NC_011205.1 identified by match to protein family HMM PF04328; hypothetical protein 701060 439851000811 SeD_A0697 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214595.1 700863 D 439851 CDS YP_002214596.1 198243298 702309..703469 1 NC_011205.1 catalyzes the transfer of an amino moiety; aminotransferase 703469 439851000813 SeD_A0700 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aminotransferase YP_002214596.1 702309 D 439851 CDS YP_002214597.1 198243813 complement(703470..704087) 1 NC_011205.1 identified by match to protein family HMM PF02195; IbrB protein 704087 439851000814 SeD_A0701 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 IbrB protein YP_002214597.1 703470 R 439851 CDS YP_002214598.1 198245248 complement(704060..705295) 1 NC_011205.1 identified by match to protein family HMM PF01507; IbrA protein 705295 439851000815 SeD_A0702 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 IbrA protein YP_002214598.1 704060 R 439851 CDS YP_002214599.1 198245584 complement(705445..706362) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 706362 439851000816 SeD_A0703 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR family transcriptional regulator YP_002214599.1 705445 R 439851 CDS YP_002214600.1 198244227 complement(706679..707425) 1 NC_011205.1 Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase 707425 dsbG 439851000817 dsbG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 disulfide isomerase/thiol-disulfide oxidase YP_002214600.1 706679 R 439851 CDS YP_002214601.1 198244619 707866..708429 1 NC_011205.1 with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase 708429 ahpC 439851000818 ahpC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 alkyl hydroperoxide reductase YP_002214601.1 707866 D 439851 CDS YP_002214602.1 198243978 710569..711129 1 NC_011205.1 identified by match to protein family HMM PF06192; anaerobic dehydrogenase subunit 711129 439851000820 SeD_A0707 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anaerobic dehydrogenase subunit YP_002214602.1 710569 D 439851 CDS YP_002214603.1 198245238 713399..713956 1 NC_011205.1 identified by match to protein family HMM PF00037; molybdopterin-containing oxidoreductase iron-sulfur subunit 713956 439851000822 SeD_A0710 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molybdopterin-containing oxidoreductase iron-sulfur subunit YP_002214603.1 713399 D 439851 CDS YP_002214604.1 198245724 713956..714723 1 NC_011205.1 molybdopterin-containing oxidoreductase membrane anchor subunit 714723 439851000823 SeD_A0711 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molybdopterin-containing oxidoreductase membrane anchor subunit YP_002214604.1 713956 D 439851 CDS YP_002214605.1 198246228 complement(714791..715084) 1 NC_011205.1 universal stress protein G 715084 439851000824 SeD_A0712 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 universal stress protein G YP_002214605.1 714791 R 439851 CDS YP_002214606.1 198242667 715442..716680 1 NC_011205.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; oxidoreductase, zinc-binding dehydrogenase family 716680 439851000826 SeD_A0714 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxidoreductase, zinc-binding dehydrogenase family YP_002214606.1 715442 D 439851 CDS YP_002214607.1 198245388 complement(716763..717173) 1 NC_011205.1 Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator 717173 439851000827 SeD_A0715 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nucleoside diphosphate kinase regulator YP_002214607.1 716763 R 439851 CDS YP_002214608.1 198244099 complement(719823..720716) 1 NC_011205.1 catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA; triphosphoribosyl-dephospho-CoA synthase 720716 citG 439851000831 citG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 triphosphoribosyl-dephospho-CoA synthase YP_002214608.1 719823 R 439851 CDS YP_002214609.1 198243869 complement(720691..721242) 1 NC_011205.1 2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate; 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase 721242 citX 439851000832 citX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase YP_002214609.1 720691 R 439851 CDS YP_002214610.1 198243223 complement(721246..722775) 1 NC_011205.1 identified by match to protein family HMM PF04223; match to protein family HMM TIGR01584; citrate lyase subunit alpha 722775 citF 439851000833 citF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 citrate lyase subunit alpha YP_002214610.1 721246 R 439851 CDS YP_002214611.1 198245379 complement(722785..723693) 1 NC_011205.1 identified by match to protein family HMM PF03328; match to protein family HMM TIGR01588; citrate (pro-3S)-lyase subunit beta 723693 citE 439851000834 citE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 citrate (pro-3S)-lyase subunit beta YP_002214611.1 722785 R 439851 CDS YP_002214612.1 198244857 complement(723690..723986) 1 NC_011205.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 723986 citD 439851000835 citD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 citrate lyase subunit gamma YP_002214612.1 723690 R 439851 CDS YP_002214613.1 198241796 complement(723983..725059) 1 NC_011205.1 identified by match to protein family HMM PF00583; match to protein family HMM PF08218; match to protein family HMM TIGR00124; match to protein family HMM TIGR00125; [citrate (pro-3S)-lyase] ligase 725059 citC 439851000836 citC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 [citrate (pro-3S)-lyase] ligase YP_002214613.1 723983 R 439851 CDS YP_002214614.1 198242156 725125..725262 1 NC_011205.1 identified by glimmer; hypothetical protein 725262 439851000837 SeD_A0725 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214614.1 725125 D 439851 CDS YP_002214615.1 198244831 complement(727805..729235) 1 NC_011205.1 responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC 729235 dcuC 439851000840 dcuC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 C4-dicarboxylate transporter DcuC YP_002214615.1 727805 R 439851 CDS YP_002214616.1 198244221 729581..730141 1 NC_011205.1 catalyzes the transfer of palmitate to lipid A; palmitoyl transferase 730141 pagP 439851000841 pagP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 palmitoyl transferase YP_002214616.1 729581 D 439851 CDS YP_002214617.1 198244715 730329..730538 1 NC_011205.1 member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; cold shock protein CspE 730538 cspE 439851000842 cspE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cold shock protein CspE YP_002214617.1 730329 D 439851 CDS YP_002214618.1 198244070 complement(730596..730979) 1 NC_011205.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 730979 crcB 439851000843 crcB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 camphor resistance protein CrcB YP_002214618.1 730596 R 439851 CDS YP_002214619.1 198242270 731070..731858 1 NC_011205.1 identified by match to protein family HMM PF00795; hydrolase YbeM 731858 439851000844 SeD_A0732 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrolase YbeM YP_002214619.1 731070 D 439851 CDS YP_002214620.1 198245981 731987..732190 1 NC_011205.1 TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein E 732190 tatE 439851000845 tatE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 twin arginine translocase protein E YP_002214620.1 731987 D 439851 CDS YP_002214621.1 198243379 complement(732276..733241) 1 NC_011205.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 733241 lipA 439851000846 lipA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoyl synthase YP_002214621.1 732276 R 439851 CDS YP_002214622.1 198242411 complement(733282..733416) 1 NC_011205.1 identified by glimmer; hypothetical protein 733416 439851000847 SeD_A0735 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214622.1 733282 R 439851 CDS YP_002214623.1 198244733 complement(733447..734400) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 734400 439851000848 SeD_A0736 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator YP_002214623.1 733447 R 439851 CDS YP_002214624.1 198244255 complement(734702..735343) 1 NC_011205.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 735343 lipB 439851000849 lipB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoate-protein ligase B YP_002214624.1 734702 R 439851 CDS YP_002214625.1 198245715 complement(735443..735706) 1 NC_011205.1 identified by match to protein family HMM PF04359; hypothetical protein 735706 439851000850 SeD_A0738 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214625.1 735443 R 439851 CDS YP_002214626.1 198245247 complement(735815..737026) 1 NC_011205.1 penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; D-alanyl-D-alanine carboxypeptidase fraction A 737026 dacA 439851000851 dacA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-alanyl-D-alanine carboxypeptidase fraction A YP_002214626.1 735815 R 439851 CDS YP_002214627.1 198246252 complement(737166..738299) 1 NC_011205.1 identified by match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413; rare lipoprotein A 738299 439851000852 SeD_A0740 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 rare lipoprotein A YP_002214627.1 737166 R 439851 CDS YP_002214628.1 198245536 complement(738310..739422) 1 NC_011205.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; cell wall shape-determining protein 739422 mrdB 439851000853 mrdB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell wall shape-determining protein YP_002214628.1 738310 R 439851 CDS YP_002214629.1 198243526 complement(739425..741326) 1 NC_011205.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 2 741326 mrdA 439851000854 mrdA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 penicillin-binding protein 2 YP_002214629.1 739425 R 439851 CDS YP_002214630.1 198244569 complement(741357..741824) 1 NC_011205.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 741824 439851000855 SeD_A0743 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 rRNA large subunit methyltransferase YP_002214630.1 741357 R 439851 CDS YP_002214631.1 198242522 complement(741828..742145) 1 NC_011205.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; hypothetical protein 742145 439851000856 SeD_A0744 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214631.1 741828 R 439851 CDS YP_002214632.1 198244900 complement(742474..743082) 1 NC_011205.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162; alpha-ribazole-5'-phosphate phosphatase 743082 cobC 439851000858 cobC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 alpha-ribazole-5'-phosphate phosphatase YP_002214632.1 742474 R 439851 CDS YP_002214633.1 198243919 743179..744273 1 NC_011205.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 744273 cobD 439851000859 cobD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 threonine-phosphate decarboxylase YP_002214633.1 743179 D 439851 CDS YP_002214634.1 198245293 complement(744248..744898) 1 NC_011205.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 744898 nadD 439851000860 nadD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nicotinic acid mononucleotide adenylyltransferase YP_002214634.1 744248 R 439851 CDS YP_002214635.1 198244429 complement(744891..745922) 1 NC_011205.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 745922 holA 439851000861 holA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA polymerase III subunit delta YP_002214635.1 744891 R 439851 CDS YP_002214636.1 198242285 complement(745922..746512) 1 NC_011205.1 rare lipoprotein B; involved in the assembly of LPS in the outer membrane; LPS-assembly lipoprotein RlpB 746512 439851000862 SeD_A0750 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LPS-assembly lipoprotein RlpB YP_002214636.1 745922 R 439851 CDS YP_002214637.1 198242815 complement(746527..749109) 1 NC_011205.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 749109 leuS 439851000863 leuS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 leucyl-tRNA synthetase YP_002214637.1 746527 R 439851 CDS YP_002214638.1 198245881 749397..749687 1 NC_011205.1 identified by match to protein family HMM PF08666; UxaA family hydrolase 749687 439851000864 SeD_A0752 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UxaA family hydrolase YP_002214638.1 749397 D 439851 CDS YP_002214639.1 198245400 749650..750876 1 NC_011205.1 identified by match to protein family HMM PF04295; UxaA family hydrolase 750876 439851000865 SeD_A0753 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UxaA family hydrolase YP_002214639.1 749650 D 439851 CDS YP_002214640.1 198242628 750926..751879 1 NC_011205.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 751879 439851000866 SeD_A0754 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-keto-3-deoxygluconate permease YP_002214640.1 750926 D 439851 CDS YP_002214641.1 198243003 753968..754441 1 NC_011205.1 identified by match to protein family HMM PF07295; hypothetical protein 754441 439851000869 SeD_A0757 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214641.1 753968 D 439851 CDS YP_002214642.1 198244452 complement(754480..755475) 1 NC_011205.1 identified by match to protein family HMM PF08238; sel1 repeat-containing family protein 755475 439851000870 SeD_A0758 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sel1 repeat-containing family protein YP_002214642.1 754480 R 439851 CDS YP_002214643.1 198245084 755693..756307 1 NC_011205.1 identified by match to protein family HMM PF06889; hypothetical protein 756307 439851000871 SeD_A0759 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214643.1 755693 D 439851 CDS YP_002214644.1 198241937 756304..757737 1 NC_011205.1 identified by match to protein family HMM PF00226; DnaJ domain-containing protein 757737 439851000872 SeD_A0760 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DnaJ domain-containing protein YP_002214644.1 756304 D 439851 CDS YP_002214645.1 198245793 757749..758444 1 NC_011205.1 identified by match to protein family HMM PF06889; hypothetical protein 758444 439851000873 SeD_A0761 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214645.1 757749 D 439851 CDS YP_002214646.1 198243611 758441..759913 1 NC_011205.1 identified by match to protein family HMM PF00226; DnaJ domain-containing protein 759913 439851000874 SeD_A0762 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DnaJ domain-containing protein YP_002214646.1 758441 D 439851 CDS YP_002214647.1 198243122 complement(759935..761614) 1 NC_011205.1 identified by match to protein family HMM PF00012; chaperone protein HscC 761614 439851000875 SeD_A0763 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chaperone protein HscC YP_002214647.1 759935 R 439851 CDS YP_002214648.1 198245509 complement(761690..762928) 1 NC_011205.1 hypothetical protein 762928 439851000876 SeD_A0764 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214648.1 761690 R 439851 CDS YP_002214649.1 198245026 complement(762960..763895) 1 NC_011205.1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 763895 rihA 439851000877 rihA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonucleoside hydrolase 1 YP_002214649.1 762960 R 439851 CDS YP_002214650.1 198246196 complement(764012..764737) 1 NC_011205.1 identified by match to protein family HMM PF00005; glutamate/aspartate ABC transporter ATP-binding protein 764737 gltL 439851000878 gltL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamate/aspartate ABC transporter ATP-binding protein YP_002214650.1 764012 R 439851 CDS YP_002214651.1 198245682 complement(764737..765411) 1 NC_011205.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamate/aspartate ABC transporter permease GltK 765411 gltK 439851000879 gltK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamate/aspartate ABC transporter permease GltK YP_002214651.1 764737 R 439851 CDS YP_002214652.1 198242331 complement(765411..766151) 1 NC_011205.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamate/aspartate ABC transporter permease GltJ 766151 gltJ 439851000880 gltJ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamate/aspartate ABC transporter permease GltJ YP_002214652.1 765411 R 439851 CDS YP_002214653.1 198241916 complement(766311..767219) 1 NC_011205.1 identified by match to protein family HMM PF00497; glutamate and aspartate transporter subunit 767219 gltI 439851000882 gltI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamate and aspartate transporter subunit YP_002214653.1 766311 R 439851 CDS YP_002214654.1 198244853 complement(767574..769163) 1 NC_011205.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 769163 lnt 439851000883 lnt Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 apolipoprotein N-acyltransferase YP_002214654.1 767574 R 439851 CDS YP_002214655.1 198244376 complement(769132..770010) 1 NC_011205.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03471; magnesium and cobalt efflux protein CorC 770010 corC 439851000884 corC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 magnesium and cobalt efflux protein CorC YP_002214655.1 769132 R 439851 CDS YP_002214656.1 198244983 complement(770007..770156) 1 NC_011205.1 hypothetical protein 770156 439851000885 SeD_A0773 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214656.1 770007 R 439851 CDS YP_002214657.1 198244509 complement(770168..770641) 1 NC_011205.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; metalloprotease 770641 439851000886 SeD_A0774 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 metalloprotease YP_002214657.1 770168 R 439851 CDS YP_002214658.1 198246028 complement(770638..771684) 1 NC_011205.1 identified by match to protein family HMM PF02562; PhoH family protein 771684 439851000887 SeD_A0775 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PhoH family protein YP_002214658.1 770638 R 439851 CDS YP_002214659.1 198245491 complement(771889..773313) 1 NC_011205.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 773313 miaB 439851000888 miaB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 (dimethylallyl)adenosine tRNA methylthiotransferase YP_002214659.1 771889 R 439851 CDS YP_002214660.1 198242401 773457..774632 1 NC_011205.1 catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 774632 ubiF 439851000889 ubiF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_002214660.1 773457 D 439851 CDS YP_002214661.1 198241912 complement(774699..775274) 1 NC_011205.1 inner membrane protein 775274 439851000890 SeD_A0778 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002214661.1 774699 R 439851 CDS YP_002214662.1 198243430 complement(776341..778005) 1 NC_011205.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 778005 asnB 439851000898 asnB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 asparagine synthetase B YP_002214662.1 776341 R 439851 CDS YP_002214663.1 198242950 complement(778296..779048) 1 NC_011205.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460; UMP phosphatase 779048 439851000899 SeD_A0787 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UMP phosphatase YP_002214663.1 778296 R 439851 CDS YP_002214664.1 198244422 complement(779095..780315) 1 NC_011205.1 identified by match to protein family HMM PF00480; N-acetylglucosamine repressor 780315 nagC 439851000900 nagC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N-acetylglucosamine repressor YP_002214664.1 779095 R 439851 CDS YP_002214665.1 198246175 complement(780320..781474) 1 NC_011205.1 catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase 781474 nagA 439851000901 nagA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N-acetylglucosamine-6-phosphate deacetylase YP_002214665.1 780320 R 439851 CDS YP_002214666.1 198243261 complement(781534..782334) 1 NC_011205.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 782334 nagB 439851000902 nagB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucosamine-6-phosphate deaminase YP_002214666.1 781534 R 439851 CDS YP_002214667.1 198243737 782661..784613 1 NC_011205.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system N-acetyl glucosamine specific transporter subunits IIABC 784613 nagE 439851000903 nagE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system N-acetyl glucosamine specific transporter subunits IIABC YP_002214667.1 782661 D 439851 CDS YP_002214668.1 198244468 784824..786491 1 NC_011205.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 786491 glnS 439851000904 glnS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutaminyl-tRNA synthetase YP_002214668.1 784824 D 439851 CDS YP_002214669.1 198245621 788609..788941 1 NC_011205.1 hypothetical protein 788941 439851000907 SeD_A0795 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214669.1 788609 D 439851 CDS YP_002214670.1 198241780 complement(788990..790294) 1 NC_011205.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; citrate-proton symporter 790294 439851000908 SeD_A0796 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 citrate-proton symporter YP_002214670.1 788990 R 439851 CDS YP_002214671.1 198242391 complement(790345..791484) 1 NC_011205.1 identified by match to protein family HMM TIGR02484; citrate utilization protein B 791484 439851000909 SeD_A0797 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 citrate utilization protein B YP_002214671.1 790345 R 439851 CDS YP_002214672.1 198244842 complement(791471..792874) 1 NC_011205.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 792874 cobZ 439851000910 cobZ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tricarballylate dehydrogenase YP_002214672.1 791471 R 439851 CDS YP_002214673.1 198242900 complement(792972..793898) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 793898 439851000911 SeD_A0799 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR family transcriptional regulator YP_002214673.1 792972 R 439851 CDS YP_002214674.1 198244383 complement(794013..794465) 1 NC_011205.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 794465 fur 439851000912 fur Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ferric uptake regulator YP_002214674.1 794013 R 439851 CDS YP_002214675.1 198242446 complement(794747..795376) 1 NC_011205.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 795376 fldA 439851000913 fldA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flavodoxin FldA YP_002214675.1 794747 R 439851 CDS YP_002214676.1 198245371 complement(795428..795721) 1 NC_011205.1 identified by match to protein family HMM PF01402; LexA regulated protein 795721 439851000914 SeD_A0803 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LexA regulated protein YP_002214676.1 795428 R 439851 CDS YP_002214677.1 198242956 795720..795842 1 NC_011205.1 identified by glimmer; hypothetical protein 795842 439851000915 SeD_A0802 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214677.1 795720 D 439851 CDS YP_002214678.1 198243574 complement(795855..796625) 1 NC_011205.1 identified by match to protein family HMM PF00561; match to protein family HMM PF07819; hypothetical protein 796625 ybfF 439851000916 ybfF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214678.1 795855 R 439851 CDS YP_002214679.1 198245000 796810..797352 1 NC_011205.1 negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 797352 seqA 439851000917 seqA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 replication initiation regulator SeqA YP_002214679.1 796810 D 439851 CDS YP_002214680.1 198243434 797377..799017 1 NC_011205.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 799017 pgm 439851000918 pgm Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoglucomutase YP_002214680.1 797377 D 439851 CDS YP_002214681.1 198245028 complement(799132..799635) 1 NC_011205.1 hypothetical protein 799635 439851000919 SeD_A0807 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214681.1 799132 R 439851 CDS YP_002214682.1 198244561 complement(799682..801001) 1 NC_011205.1 catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 801001 potE 439851000920 potE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 putrescine transporter YP_002214682.1 799682 R 439851 CDS YP_002214683.1 198245384 complement(800998..803196) 1 NC_011205.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; ornithine decarboxylase 803196 speF 439851000921 speF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ornithine decarboxylase YP_002214683.1 800998 R 439851 CDS YP_002214684.1 198244488 complement(803959..804636) 1 NC_011205.1 response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; DNA-binding transcriptional activator KdpE 804636 439851000922 SeD_A0810 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional activator KdpE YP_002214684.1 803959 R 439851 CDS YP_002214685.1 198242456 complement(804633..807317) 1 NC_011205.1 sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; sensor protein KdpD 807317 439851000923 SeD_A0811 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sensor protein KdpD YP_002214685.1 804633 R 439851 CDS YP_002214686.1 198243108 complement(807314..807898) 1 NC_011205.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 807898 kdpC 439851000924 kdpC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 potassium-transporting ATPase subunit C YP_002214686.1 807314 R 439851 CDS YP_002214687.1 198245462 complement(807907..809955) 1 NC_011205.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 809955 kdpB 439851000925 kdpB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 potassium-transporting ATPase subunit B YP_002214687.1 807907 R 439851 CDS YP_002214688.1 198246067 complement(809976..811655) 1 NC_011205.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 811655 kdpA 439851000926 kdpA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 potassium-transporting ATPase subunit A YP_002214688.1 809976 R 439851 CDS YP_002214689.1 198244345 complement(811655..811852) 1 NC_011205.1 identified by match to protein family HMM TIGR02115; K+-transporting ATPase, F subunit 811852 kdpF 439851000927 kdpF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 K+-transporting ATPase, F subunit YP_002214689.1 811655 R 439851 CDS YP_002214690.1 198245007 812081..812287 1 NC_011205.1 hypothetical protein 812287 439851000928 SeD_A0816 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214690.1 812081 D 439851 CDS YP_002214691.1 198244498 812399..813820 1 NC_011205.1 UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; deoxyribodipyrimidine photolyase 813820 439851000929 SeD_A0817 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 deoxyribodipyrimidine photolyase YP_002214691.1 812399 D 439851 CDS YP_002214692.1 198245004 complement(813859..815340) 1 NC_011205.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; inner membrane transporter YbgH 815340 439851000930 SeD_A0818 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane transporter YbgH YP_002214692.1 813859 R 439851 CDS YP_002214693.1 198242999 815669..816412 1 NC_011205.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hydrolase-oxidase 816412 439851000931 SeD_A0819 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrolase-oxidase YP_002214693.1 815669 D 439851 CDS YP_002214694.1 198244656 816428..817084 1 NC_011205.1 identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370; hypothetical protein 817084 439851000932 SeD_A0820 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214694.1 816428 D 439851 CDS YP_002214695.1 198243417 817078..818010 1 NC_011205.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724; allophanate hydrolase subunit 2 818010 439851000933 SeD_A0821 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 allophanate hydrolase subunit 2 YP_002214695.1 817078 D 439851 CDS YP_002214696.1 198243802 818000..818734 1 NC_011205.1 identified by match to protein family HMM PF03746; LamB/YcsF family protein 818734 439851000934 SeD_A0822 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LamB/YcsF family protein YP_002214696.1 818000 D 439851 CDS YP_002214697.1 198244062 818856..819647 1 NC_011205.1 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity; endonuclease VIII 819647 439851000935 SeD_A0823 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 endonuclease VIII YP_002214697.1 818856 D 439851 CDS YP_002214698.1 198244644 complement(819702..820748) 1 NC_011205.1 identified by match to protein family HMM PF05145; match to protein family HMM TIGR03082; hypothetical protein 820748 439851000936 SeD_A0824 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214698.1 819702 R 439851 CDS YP_002214699.1 198243339 complement(820885..822168) 1 NC_011205.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 822168 gltA 439851000937 gltA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type II citrate synthase YP_002214699.1 820885 R 439851 CDS YP_002214700.1 198243969 822908..823312 1 NC_011205.1 identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970; succinate dehydrogenase cytochrome b556 large membrane subunit 823312 sdhC 439851000938 sdhC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 succinate dehydrogenase cytochrome b556 large membrane subunit YP_002214700.1 822908 D 439851 CDS YP_002214701.1 198246230 823306..823653 1 NC_011205.1 identified by match to protein family HMM TIGR02968; succinate dehydrogenase cytochrome b556 small membrane subunit 823653 sdhD 439851000939 sdhD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 succinate dehydrogenase cytochrome b556 small membrane subunit YP_002214701.1 823306 D 439851 CDS YP_002214702.1 198242418 823653..825419 1 NC_011205.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 825419 sdhA 439851000940 sdhA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 succinate dehydrogenase flavoprotein subunit YP_002214702.1 823653 D 439851 CDS YP_002214703.1 198245175 825433..826152 1 NC_011205.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 826152 sdhB 439851000941 sdhB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 succinate dehydrogenase iron-sulfur subunit YP_002214703.1 825433 D 439851 CDS YP_002214704.1 198246127 826678..829479 1 NC_011205.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 829479 sucA 439851000942 sucA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-oxoglutarate dehydrogenase E1 YP_002214704.1 826678 D 439851 CDS YP_002214705.1 198243386 829494..830702 1 NC_011205.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 830702 sucB 439851000943 sucB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dihydrolipoamide succinyltransferase YP_002214705.1 829494 D 439851 CDS YP_002214706.1 198242608 830844..832010 1 NC_011205.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 832010 sucC 439851000944 sucC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 succinyl-CoA synthetase subunit beta YP_002214706.1 830844 D 439851 CDS YP_002214707.1 198242661 832010..832879 1 NC_011205.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 832879 439851000945 SeD_A0833 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 succinyl-CoA synthetase subunit alpha YP_002214707.1 832010 D 439851 CDS YP_002214708.1 198242028 832908..833033 1 NC_011205.1 identified by glimmer; hypothetical protein 833033 439851000946 SeD_A0834 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214708.1 832908 D 439851 CDS YP_002214709.1 198243977 833120..833245 1 NC_011205.1 identified by glimmer; hypothetical protein 833245 439851000947 SeD_A0835 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214709.1 833120 D 439851 CDS YP_002214710.1 198243553 834462..836030 1 NC_011205.1 identified by match to protein family HMM PF01654; cytochrome d ubiquinol oxidase subunit I 836030 cydA 439851000948 cydA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome d ubiquinol oxidase subunit I YP_002214710.1 834462 D 439851 CDS YP_002214711.1 198244832 836046..837185 1 NC_011205.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase subunit II 837185 cydB1 439851000949 cydB1 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome d ubiquinol oxidase subunit II YP_002214711.1 836046 D 439851 CDS YP_002214712.1 198244127 837200..837313 1 NC_011205.1 identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106; cyd operon protein YbgT 837313 439851000950 SeD_A0838 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cyd operon protein YbgT YP_002214712.1 837200 D 439851 CDS YP_002214713.1 198246105 837313..837606 1 NC_011205.1 identified by match to protein family HMM TIGR02112; hypothetical protein 837606 439851000951 SeD_A0839 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214713.1 837313 D 439851 CDS YP_002214714.1 198243267 837835..838239 1 NC_011205.1 catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; acyl-CoA thioester hydrolase 838239 439851000952 SeD_A0840 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acyl-CoA thioester hydrolase YP_002214714.1 837835 D 439851 CDS YP_002214715.1 198242904 838236..838928 1 NC_011205.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ 838928 tolQ 439851000953 tolQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 colicin uptake protein TolQ YP_002214715.1 838236 D 439851 CDS YP_002214716.1 198243683 838932..839360 1 NC_011205.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 839360 tolR 439851000954 tolR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 colicin uptake protein TolR YP_002214716.1 838932 D 439851 CDS YP_002214717.1 198244347 839425..840603 1 NC_011205.1 inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins; cell envelope integrity inner membrane protein TolA 840603 tolA 439851000955 tolA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell envelope integrity inner membrane protein TolA YP_002214717.1 839425 D 439851 CDS YP_002214718.1 198244972 840724..842019 1 NC_011205.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 842019 tolB 439851000956 tolB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 translocation protein TolB YP_002214718.1 840724 D 439851 CDS YP_002214719.1 198245566 842054..842578 1 NC_011205.1 identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802; peptidoglycan-associated outer membrane lipoprotein 842578 pal 439851000957 pal Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidoglycan-associated outer membrane lipoprotein YP_002214719.1 842054 D 439851 CDS YP_002214720.1 198246203 842588..843376 1 NC_011205.1 periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; tol-pal system protein YbgF 843376 439851000958 SeD_A0846 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tol-pal system protein YbgF YP_002214720.1 842588 D 439851 CDS YP_002214721.1 198242563 844357..845460 1 NC_011205.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 845460 nadA 439851000963 nadA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 quinolinate synthetase YP_002214721.1 844357 D 439851 CDS YP_002214722.1 198244360 845485..846204 1 NC_011205.1 identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528; NMN family, nucleoside/purine/pyrimidine transporter 846204 439851000964 SeD_A0852 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NMN family, nucleoside/purine/pyrimidine transporter YP_002214722.1 845485 D 439851 CDS YP_002214723.1 198243130 complement(846201..847139) 1 NC_011205.1 involved in zinc efflux across the cytoplasmic membrane; zinc transporter ZitB 847139 439851000965 SeD_A0853 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 zinc transporter ZitB YP_002214723.1 846201 R 439851 CDS YP_002214724.1 198242107 complement(847250..847636) 1 NC_011205.1 homeobox protein 847636 439851000966 SeD_A0854 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 homeobox protein YP_002214724.1 847250 R 439851 CDS YP_002214725.1 198245276 847955..849007 1 NC_011205.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 849007 aroG 439851000967 aroG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phospho-2-dehydro-3-deoxyheptonate aldolase YP_002214725.1 847955 D 439851 CDS YP_002214726.1 198244790 complement(849101..849646) 1 NC_011205.1 Fe-S type, tartrate/fumarate subfamily, beta region; identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723; hydro-lyase 849646 439851000968 SeD_A0856 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydro-lyase YP_002214726.1 849101 R 439851 CDS YP_002214727.1 198244634 complement(849661..850542) 1 NC_011205.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 850542 439851000969 SeD_A0857 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fumarate hydratase YP_002214727.1 849661 R 439851 CDS YP_002214728.1 198244130 850636..851526 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 851526 439851000970 SeD_A0858 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002214728.1 850636 D 439851 CDS YP_002214729.1 198243905 complement(851527..852474) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 852474 439851000971 SeD_A0859 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002214729.1 851527 R 439851 CDS YP_002214730.1 198243401 852733..854001 1 NC_011205.1 identified by match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM PF06808; anion transporter 854001 439851000972 SeD_A0860 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anion transporter YP_002214730.1 852733 D 439851 CDS YP_002214731.1 198245864 854090..854299 1 NC_011205.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 854299 439851000973 SeD_A0861 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxaloacetate decarboxylase subunit gamma YP_002214731.1 854090 D 439851 CDS YP_002214732.1 198245397 854315..856087 1 NC_011205.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 856087 oadA 439851000974 oadA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxaloacetate decarboxylase YP_002214732.1 854315 D 439851 CDS YP_002214733.1 198244627 856100..857401 1 NC_011205.1 identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109; oxaloacetate decarboxylase beta chain 857401 439851000975 SeD_A0863 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxaloacetate decarboxylase beta chain YP_002214733.1 856100 D 439851 CDS YP_002214734.1 198241958 857520..858218 1 NC_011205.1 hypothetical protein 858218 439851000976 SeD_A0864 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214734.1 857520 D 439851 CDS YP_002214735.1 198244731 858598..859677 1 NC_011205.1 identified by match to protein family HMM PF01032; ABC transporter permease 859677 439851000977 SeD_A0865 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter permease YP_002214735.1 858598 D 439851 CDS YP_002214736.1 198245231 859677..860453 1 NC_011205.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 860453 439851000978 SeD_A0866 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter ATP-binding protein YP_002214736.1 859677 D 439851 CDS YP_002214737.1 198242762 complement(860544..861296) 1 NC_011205.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 861296 gpmA 439851000979 gpmA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoglyceromutase YP_002214737.1 860544 R 439851 CDS YP_002214738.1 198242985 complement(861520..862560) 1 NC_011205.1 catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose; aldose 1-epimerase 862560 galM 439851000980 galM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aldose 1-epimerase YP_002214738.1 861520 R 439851 CDS YP_002214739.1 198245835 complement(862554..863702) 1 NC_011205.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 863702 galK 439851000981 galK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 galactokinase YP_002214739.1 862554 R 439851 CDS YP_002214740.1 198241980 complement(863705..864751) 1 NC_011205.1 catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase 864751 galT 439851000982 galT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 galactose-1-phosphate uridylyltransferase YP_002214740.1 863705 R 439851 CDS YP_002214741.1 198245471 complement(864762..865778) 1 NC_011205.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-galactose-4-epimerase 865778 galE 439851000983 galE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UDP-galactose-4-epimerase YP_002214741.1 864762 R 439851 CDS YP_002214742.1 198246117 complement(866001..866909) 1 NC_011205.1 hypothetical protein 866909 439851000984 SeD_A0872 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214742.1 866001 R 439851 CDS YP_002214743.1 198244436 complement(867080..868555) 1 NC_011205.1 contains 2 ATP-binding cassettes; involved in the transport of molybdenum; molybdenum transport ATP-binding protein ModF 868555 439851000985 SeD_A0873 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molybdenum transport ATP-binding protein ModF YP_002214743.1 867080 R 439851 CDS YP_002214744.1 198244149 complement(868623..869411) 1 NC_011205.1 represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; DNA-binding transcriptional regulator ModE 869411 439851000986 SeD_A0874 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator ModE YP_002214744.1 868623 R 439851 CDS YP_002214745.1 198243269 869540..869689 1 NC_011205.1 hypothetical protein 869689 439851000987 SeD_A0875 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214745.1 869540 D 439851 CDS YP_002214746.1 198245115 869856..870629 1 NC_011205.1 with ModCB is involved in the high-affinity transport of molybdate; molybdate transporter periplasmic protein 870629 modA 439851000988 modA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molybdate transporter periplasmic protein YP_002214746.1 869856 D 439851 CDS YP_002214747.1 198245550 870629..871318 1 NC_011205.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease protein 871318 modB 439851000989 modB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molybdate ABC transporter permease protein YP_002214747.1 870629 D 439851 CDS YP_002214748.1 198242814 871321..872379 1 NC_011205.1 Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein 872379 modC 439851000990 modC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molybdate transporter ATP-binding protein YP_002214748.1 871321 D 439851 CDS YP_002214749.1 198244030 complement(872380..873240) 1 NC_011205.1 YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily; phosphotransferase 873240 439851000991 SeD_A0879 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphotransferase YP_002214749.1 872380 R 439851 CDS YP_002214750.1 198245773 873362..874357 1 NC_011205.1 catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase 874357 439851000992 SeD_A0880 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 6-phosphogluconolactonase YP_002214750.1 873362 D 439851 CDS YP_002214751.1 198243059 complement(874501..875784) 1 NC_011205.1 outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family; pectinesterase 875784 439851000993 SeD_A0881 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pectinesterase YP_002214751.1 874501 R 439851 CDS YP_002214752.1 198244788 876022..877245 1 NC_011205.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 877245 hutI 439851000994 hutI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 imidazolonepropionase YP_002214752.1 876022 D 439851 CDS YP_002214753.1 198243770 877242..878183 1 NC_011205.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 878183 hutG 439851000995 hutG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formimidoylglutamase YP_002214753.1 877242 D 439851 CDS YP_002214754.1 198243749 878228..878953 1 NC_011205.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018; histidine utilization repressor 878953 hutC 439851000996 hutC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 histidine utilization repressor YP_002214754.1 878228 D 439851 CDS YP_002214755.1 198241841 879150..880835 1 NC_011205.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 880835 hutU 439851000997 hutU Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 urocanate hydratase YP_002214755.1 879150 D 439851 CDS YP_002214756.1 198242428 880837..882357 1 NC_011205.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 882357 hutH 439851000998 hutH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 histidine ammonia-lyase YP_002214756.1 880837 D 439851 CDS YP_002214757.1 198245616 complement(882442..882918) 1 NC_011205.1 YbhB; similar to rat and human kinase inhibitory proteins; kinase inhibitor protein 882918 439851000999 SeD_A0887 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 kinase inhibitor protein YP_002214757.1 882442 R 439851 CDS YP_002214758.1 198244024 complement(882966..884264) 1 NC_011205.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 884264 bioA 439851001000 bioA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_002214758.1 882966 R 439851 CDS YP_002214759.1 198244425 884351..885391 1 NC_011205.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase 885391 bioB 439851001001 bioB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 biotin synthase YP_002214759.1 884351 D 439851 CDS YP_002214760.1 198244941 885388..886545 1 NC_011205.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 886545 bioF 439851001002 bioF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 8-amino-7-oxononanoate synthase YP_002214760.1 885388 D 439851 CDS YP_002214761.1 198243717 886529..887284 1 NC_011205.1 methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth; biotin biosynthesis protein BioC 887284 bioC 439851001003 bioC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 biotin biosynthesis protein BioC YP_002214761.1 886529 D 439851 CDS YP_002214762.1 198242071 887277..887963 1 NC_011205.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 887963 bioD 439851001004 bioD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dithiobiotin synthetase YP_002214762.1 887277 D 439851 CDS YP_002214763.1 198242425 888614..890635 1 NC_011205.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 890635 uvrB 439851001005 uvrB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 excinuclease ABC subunit B YP_002214763.1 888614 D 439851 CDS YP_002214764.1 198246208 891125..893392 1 NC_011205.1 hypothetical protein 893392 439851001006 SeD_A0894 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214764.1 891125 D 439851 CDS YP_002214765.1 198245832 complement(893484..894392) 1 NC_011205.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; hypothetical protein 894392 439851001007 SeD_A0895 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214765.1 893484 R 439851 CDS YP_002214766.1 198241803 894789..895778 1 NC_011205.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 895778 moaA 439851001008 moaA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molybdenum cofactor biosynthesis protein A YP_002214766.1 894789 D 439851 CDS YP_002214767.1 198242616 895800..896312 1 NC_011205.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR02667; molybdenum cofactor biosynthesis protein B 896312 moaB 439851001009 moaB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molybdenum cofactor biosynthesis protein B YP_002214767.1 895800 D 439851 CDS YP_002214768.1 198243124 896315..896800 1 NC_011205.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 896800 moaC 439851001010 moaC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molybdenum cofactor biosynthesis protein MoaC YP_002214768.1 896315 D 439851 CDS YP_002214769.1 198243899 896793..897038 1 NC_011205.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 897038 moaD 439851001011 moaD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molybdopterin synthase small subunit YP_002214769.1 896793 D 439851 CDS YP_002214770.1 198244764 897040..897492 1 NC_011205.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin guanine dinucleotide biosynthesis protein MoaE 897492 moaE 439851001012 moaE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molybdopterin guanine dinucleotide biosynthesis protein MoaE YP_002214770.1 897040 D 439851 CDS YP_002214771.1 198244079 897540..898244 1 NC_011205.1 identified by match to protein family HMM PF01027; hypothetical protein 898244 439851001013 SeD_A0901 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214771.1 897540 D 439851 CDS YP_002214772.1 198245683 898389..899096 1 NC_011205.1 integral membrane protein 899096 439851001014 SeD_A0902 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 integral membrane protein YP_002214772.1 898389 D 439851 CDS YP_002214773.1 198245280 899126..899728 1 NC_011205.1 inner membrane protein 899728 439851001015 SeD_A0903 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002214773.1 899126 D 439851 CDS YP_002214774.1 198242256 complement(900298..901260) 1 NC_011205.1 hypothetical protein 901260 439851001018 SeD_A0906 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214774.1 900298 R 439851 CDS YP_002214775.1 198244276 complement(901260..902501) 1 NC_011205.1 identified by match to protein family HMM PF00614; cardiolipin synthase 2 902501 439851001019 SeD_A0907 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cardiolipin synthase 2 YP_002214775.1 901260 R 439851 CDS YP_002214776.1 198243219 complement(902498..903256) 1 NC_011205.1 identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein 903256 439851001020 SeD_A0908 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 endonuclease/exonuclease/phosphatase family protein YP_002214776.1 902498 R 439851 CDS YP_002214777.1 198245685 903389..903799 1 NC_011205.1 hypothetical protein 903799 439851001021 SeD_A0909 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214777.1 903389 D 439851 CDS YP_002214778.1 198242231 complement(903761..904867) 1 NC_011205.1 identified by match to protein family HMM PF01061; ABC transporter permease 904867 439851001022 SeD_A0910 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter permease YP_002214778.1 903761 R 439851 CDS YP_002214779.1 198243216 complement(904983..906113) 1 NC_011205.1 identified by match to protein family HMM PF01061; inner membrane transport permease YbhS 906113 439851001023 SeD_A0911 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane transport permease YbhS YP_002214779.1 904983 R 439851 CDS YP_002214780.1 198242682 complement(906106..907842) 1 NC_011205.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 907842 439851001024 SeD_A0912 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter ATP-binding protein YP_002214780.1 906106 R 439851 CDS YP_002214781.1 198244763 complement(907835..908830) 1 NC_011205.1 identified by match to protein family HMM PF00529; hypothetical protein 908830 439851001025 SeD_A0913 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214781.1 907835 R 439851 CDS YP_002214782.1 198244898 complement(908830..909504) 1 NC_011205.1 identified by match to protein family HMM PF00440; match to protein family HMM PF09209; DNA-binding transcriptional regulator 909504 439851001026 SeD_A0914 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator YP_002214782.1 908830 R 439851 CDS YP_002214783.1 198243732 909734..911095 1 NC_011205.1 this helicase is not essential cell growth; ATP-dependent RNA helicase RhlE 911095 439851001027 SeD_A0915 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent RNA helicase RhlE YP_002214783.1 909734 D 439851 CDS YP_002214784.1 198244098 911303..913447 1 NC_011205.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 913447 dinG 439851001028 dinG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent DNA helicase DinG YP_002214784.1 911303 D 439851 CDS YP_002214785.1 198241830 913477..914451 1 NC_011205.1 identified by match to protein family HMM PF02885; glycosyl transferase family protein 914451 439851001029 SeD_A0917 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycosyl transferase family protein YP_002214785.1 913477 D 439851 CDS YP_002214786.1 198242369 complement(914607..914867) 1 NC_011205.1 identified by match to protein family HMM PF07338; hypothetical protein 914867 439851001030 SeD_A0919 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214786.1 914607 R 439851 CDS YP_002214787.1 198245649 914836..914949 1 NC_011205.1 identified by glimmer; hypothetical protein 914949 439851001031 SeD_A0918 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214787.1 914836 D 439851 CDS YP_002214788.1 198246191 complement(915152..915418) 1 NC_011205.1 identified by match to protein family HMM PF01258; hypothetical protein 915418 439851001032 SeD_A0920 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214788.1 915152 R 439851 CDS YP_002214789.1 198242849 915623..916549 1 NC_011205.1 identified by match to protein family HMM PF05971; SAM-dependent methyltransferase 916549 439851001033 SeD_A0921 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 SAM-dependent methyltransferase YP_002214789.1 915623 D 439851 CDS YP_002214790.1 198242138 complement(916546..918768) 1 NC_011205.1 identified by match to protein family HMM PF00924; hypothetical protein 918768 439851001034 SeD_A0922 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214790.1 916546 R 439851 CDS YP_002214791.1 198245641 complement(918887..919609) 1 NC_011205.1 similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein 919609 glnQ 439851001035 glnQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamine ABC transporter ATP-binding protein YP_002214791.1 918887 R 439851 CDS YP_002214792.1 198242595 complement(919606..920265) 1 NC_011205.1 similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease protein 920265 glnP 439851001036 glnP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamine ABC transporter permease protein YP_002214792.1 919606 R 439851 CDS YP_002214793.1 198245988 complement(920409..921155) 1 NC_011205.1 similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter periplasmic protein 921155 glnH 439851001037 glnH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamine ABC transporter periplasmic protein YP_002214793.1 920409 R 439851 CDS YP_002214794.1 198241969 complement(921632..922135) 1 NC_011205.1 binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA starvation/stationary phase protection protein Dps 922135 439851001038 SeD_A0926 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA starvation/stationary phase protection protein Dps YP_002214794.1 921632 R 439851 CDS YP_002214795.1 198244673 complement(922278..922409) 1 NC_011205.1 hypothetical protein 922409 439851001039 SeD_A0927 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214795.1 922278 R 439851 CDS YP_002214796.1 198245156 complement(922438..923298) 1 NC_011205.1 identified by match to protein family HMM PF00892; threonine and homoserine efflux system 923298 439851001040 SeD_A0928 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 threonine and homoserine efflux system YP_002214796.1 922438 R 439851 CDS YP_002214797.1 198245355 923652..924167 1 NC_011205.1 OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; outer membrane protein X 924167 ompX 439851001041 ompX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein X YP_002214797.1 923652 D 439851 CDS YP_002214798.1 198245829 complement(924229..925809) 1 NC_011205.1 identified by match to protein family HMM PF00884; hypothetical protein 925809 439851001042 SeD_A0930 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214798.1 924229 R 439851 CDS YP_002214799.1 198243958 925810..925938 1 NC_011205.1 identified by glimmer; hypothetical protein 925938 439851001043 SeD_A0931 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214799.1 925810 D 439851 CDS YP_008169821.1 528879890 925975..926145 1 NC_011205.1 hypothetical protein 926145 439851001044 SeD_A0932 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_008169821.1 925975 D 439851 CDS YP_002214800.1 198243431 926388..926861 1 NC_011205.1 Transcriptional regulator that represses the manganese transporter MntH when manganese is present; manganese transport regulator MntR 926861 439851001045 SeD_A0933 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 manganese transport regulator MntR YP_002214800.1 926388 D 439851 CDS YP_002214801.1 198243568 926858..927970 1 NC_011205.1 identified by match to protein family HMM PF03600; citrate transporter family protein 927970 439851001046 SeD_A0934 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 citrate transporter family protein YP_002214801.1 926858 D 439851 CDS YP_002214802.1 198243048 complement(928014..928934) 1 NC_011205.1 identified by match to protein family HMM PF03734; hypothetical protein 928934 439851001047 SeD_A0935 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214802.1 928014 R 439851 CDS YP_002214803.1 198245101 929153..930745 1 NC_011205.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 930745 439851001048 SeD_A0936 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter ATP-binding protein YP_002214803.1 929153 D 439851 CDS YP_002214804.1 198242053 932086..932256 1 NC_011205.1 identified by glimmer; hypothetical protein 932256 439851001050 SeD_A0939 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214804.1 932086 D 439851 CDS YP_002214805.1 198242706 complement(933052..934317) 1 NC_011205.1 identified by match to protein family HMM PF07350; hypothetical protein 934317 439851001052 SeD_A0941 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214805.1 933052 R 439851 CDS YP_002214806.1 198242969 934463..934576 1 NC_011205.1 identified by glimmer; hypothetical protein 934576 439851001053 SeD_A0942 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214806.1 934463 D 439851 CDS YP_002214807.1 198243894 934579..935388 1 NC_011205.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; sugar phosphatase SupH 935388 439851001054 SeD_A0943 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sugar phosphatase SupH YP_002214807.1 934579 D 439851 CDS YP_002214808.1 198242330 complement(935466..937898) 1 NC_011205.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774; formate C-acetyltransferase 3 937898 439851001055 SeD_A0944 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate C-acetyltransferase 3 YP_002214808.1 935466 R 439851 CDS YP_002214809.1 198241822 complement(937904..938803) 1 NC_011205.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494; glycyl-radical enzyme activating protein 938803 439851001056 SeD_A0945 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycyl-radical enzyme activating protein YP_002214809.1 937904 R 439851 CDS YP_002214810.1 198245508 complement(939081..939830) 1 NC_011205.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 939830 moeB 439851001057 moeB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molybdopterin biosynthesis protein MoeB YP_002214810.1 939081 R 439851 CDS YP_002214811.1 198242834 complement(939830..941065) 1 NC_011205.1 is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; molybdopterin biosynthesis protein MoeA 941065 439851001058 SeD_A0947 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molybdopterin biosynthesis protein MoeA YP_002214811.1 939830 R 439851 CDS YP_002214812.1 198244959 941269..942210 1 NC_011205.1 identified by match to protein family HMM PF01112; L-asparaginase 942210 439851001059 SeD_A0948 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-asparaginase YP_002214812.1 941269 D 439851 CDS YP_002214813.1 198244499 942221..944092 1 NC_011205.1 with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; glutathione transporter ATP-binding protein 944092 439851001060 SeD_A0949 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione transporter ATP-binding protein YP_002214813.1 942221 D 439851 CDS YP_002214814.1 198243736 944125..945663 1 NC_011205.1 identified by match to protein family HMM PF00496; glutathione-binding protein GsiB 945663 439851001061 SeD_A0950 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione-binding protein GsiB YP_002214814.1 944125 D 439851 CDS YP_002214815.1 198243083 945724..946644 1 NC_011205.1 identified by match to protein family HMM PF00528; glutathione ABC transporter permease 946644 gsiC 439851001062 gsiC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione ABC transporter permease YP_002214815.1 945724 D 439851 CDS YP_002214816.1 198245187 946647..947558 1 NC_011205.1 identified by match to protein family HMM PF00528; glutathione transport system permease GsiD 947558 439851001063 SeD_A0952 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione transport system permease GsiD YP_002214816.1 946647 D 439851 CDS YP_002214817.1 198242582 complement(947649..948974) 1 NC_011205.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase 948974 rimO 439851001064 rimO Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribosomal protein S12 methylthiotransferase YP_002214817.1 947649 R 439851 CDS YP_002214818.1 198242254 949001..949135 1 NC_011205.1 identified by glimmer; hypothetical protein 949135 439851001065 SeD_A0954 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214818.1 949001 D 439851 CDS YP_002214819.1 198242777 949205..949588 1 NC_011205.1 BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; biofilm formation regulatory protein BssR 949588 bssR 439851001066 bssR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 biofilm formation regulatory protein BssR YP_002214819.1 949205 D 439851 CDS YP_002214820.1 198245420 950301..950816 1 NC_011205.1 hypothetical protein 950816 439851001067 SeD_A0956 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214820.1 950301 D 439851 CDS YP_002214821.1 198245349 950839..951588 1 NC_011205.1 identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta 951588 439851001068 SeD_A0957 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 electron transfer flavoprotein subunit beta YP_002214821.1 950839 D 439851 CDS YP_002214822.1 198245951 951599..952552 1 NC_011205.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha 952552 439851001069 SeD_A0958 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 electron transfer flavoprotein subunit alpha YP_002214822.1 951599 D 439851 CDS YP_002214823.1 198244664 952846..954009 1 NC_011205.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 954009 439851001071 SeD_A0960 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acyl-CoA dehydrogenase YP_002214823.1 952846 D 439851 CDS YP_002214824.1 198243420 954457..956142 1 NC_011205.1 identified by match to protein family HMM PF01266; match to protein family HMM PF05187; electron transfer flavoprotein-ubiquinone oxidoreductase 956142 439851001072 SeD_A0961 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 electron transfer flavoprotein-ubiquinone oxidoreductase YP_002214824.1 954457 D 439851 CDS YP_002214825.1 198243839 complement(956148..957038) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 957038 439851001073 SeD_A0962 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR family transcriptional regulator YP_002214825.1 956148 R 439851 CDS YP_002214826.1 198242042 complement(957303..957728) 1 NC_011205.1 citrate transporter family protein 957728 439851001074 SeD_A0963 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 citrate transporter family protein YP_002214826.1 957303 R 439851 CDS YP_008169822.1 528879891 958075..958572 1 NC_011205.1 aldose sugar dehydrogenase 958572 439851001075 SeD_A0964 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aldose sugar dehydrogenase YP_008169822.1 958075 D 439851 CDS YP_008169823.1 528879892 958593..958766 1 NC_011205.1 aldose sugar dehydrogenase 958766 439851001076 SeD_A0965 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aldose sugar dehydrogenase YP_008169823.1 958593 D 439851 CDS YP_002214827.1 198243229 complement(958763..959389) 1 NC_011205.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 959389 439851001077 SeD_A0966 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione S-transferase YP_002214827.1 958763 R 439851 CDS YP_002214828.1 198246085 959555..960835 1 NC_011205.1 penicillin-binding protein 6a; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase fraction C 960835 439851001078 SeD_A0967 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-alanyl-D-alanine carboxypeptidase fraction C YP_002214828.1 959555 D 439851 CDS YP_002214829.1 198244451 complement(960880..961638) 1 NC_011205.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DNA-binding transcriptional repressor DeoR 961638 439851001079 SeD_A0968 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional repressor DeoR YP_002214829.1 960880 R 439851 CDS YP_002214830.1 198245080 complement(961710..962318) 1 NC_011205.1 identified by match to protein family HMM PF01569; undecaprenyl pyrophosphate phosphatase 962318 439851001080 SeD_A0969 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 undecaprenyl pyrophosphate phosphatase YP_002214830.1 961710 R 439851 CDS YP_002214831.1 198243555 962631..963863 1 NC_011205.1 identified by match to protein family HMM PF07690; multidrug resistance protein MdtM 963863 439851001081 SeD_A0970 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multidrug resistance protein MdtM YP_002214831.1 962631 D 439851 CDS YP_002214832.1 198241950 complement(963917..964732) 1 NC_011205.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; phosphatase YbjI 964732 439851001082 SeD_A0971 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphatase YbjI YP_002214832.1 963917 R 439851 CDS YP_002214833.1 198242546 complement(964729..965940) 1 NC_011205.1 identified by match to protein family HMM PF07690; hypothetical protein 965940 439851001083 SeD_A0972 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214833.1 964729 R 439851 CDS YP_002214834.1 198245298 966108..966728 1 NC_011205.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 966728 439851001084 SeD_A0973 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 TetR family transcriptional regulator YP_002214834.1 966108 D 439851 CDS YP_002214835.1 198242504 complement(966845..968530) 1 NC_011205.1 identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625; hypothetical protein 968530 439851001086 SeD_A0975 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214835.1 966845 R 439851 CDS YP_002214836.1 198242880 968876..969178 1 NC_011205.1 hypothetical protein 969178 439851001087 SeD_A0976 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214836.1 968876 D 439851 CDS YP_002214837.1 198243502 complement(969210..969473) 1 NC_011205.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 1 969473 grxA 439851001088 grxA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutaredoxin 1 YP_002214837.1 969210 R 439851 CDS YP_002214838.1 198244437 969643..969933 1 NC_011205.1 YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function; hypothetical protein 969933 439851001089 SeD_A0978 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214838.1 969643 D 439851 CDS YP_002214839.1 198245068 969917..970639 1 NC_011205.1 NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A 970639 nfsA 439851001090 nfsA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitroreductase A YP_002214839.1 969917 D 439851 CDS YP_002214840.1 198245464 970697..971599 1 NC_011205.1 responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; ribosomal protein S6 modification protein 971599 rimK 439851001091 rimK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribosomal protein S6 modification protein YP_002214840.1 970697 D 439851 CDS YP_002214841.1 198246058 971695..972171 1 NC_011205.1 hypothetical protein 972171 439851001092 SeD_A0981 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214841.1 971695 D 439851 CDS YP_002214842.1 198245718 972517..973632 1 NC_011205.1 identified by match to protein family HMM PF01547; putrescine transporter subunit: periplasmic-binding component of ABC superfamily 973632 439851001093 SeD_A0982 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 putrescine transporter subunit: periplasmic-binding component of ABC superfamily YP_002214842.1 972517 D 439851 CDS YP_002214843.1 198245629 973720..974853 1 NC_011205.1 part of the PotFGHI ATP-dependent putrescine transporter; putrescine transporter ATP-binding subunit 974853 potG 439851001094 potG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 putrescine transporter ATP-binding subunit YP_002214843.1 973720 D 439851 CDS YP_002214844.1 198244724 974863..975816 1 NC_011205.1 identified by match to protein family HMM PF00528; putrescine transporter subunit: membrane component of ABC superfamily 975816 439851001095 SeD_A0984 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 putrescine transporter subunit: membrane component of ABC superfamily YP_002214844.1 974863 D 439851 CDS YP_002214845.1 198245909 975813..976658 1 NC_011205.1 identified by match to protein family HMM PF00528; putrescine transporter subunit: membrane component of ABC superfamily 976658 439851001096 SeD_A0985 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 putrescine transporter subunit: membrane component of ABC superfamily YP_002214845.1 975813 D 439851 CDS YP_002214846.1 198242106 976732..977205 1 NC_011205.1 hypothetical protein 977205 439851001097 SeD_A0986 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214846.1 976732 D 439851 CDS YP_002214847.1 198242601 977248..978375 1 NC_011205.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 978375 rumB 439851001098 rumB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 23S rRNA methyluridine methyltransferase YP_002214847.1 977248 D 439851 CDS YP_002214848.1 198243411 978670..980013 1 NC_011205.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 980013 439851001099 SeD_A0988 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system ascorbate-specific transporter subunit IIC YP_002214848.1 978670 D 439851 CDS YP_002214849.1 198243557 980043..980363 1 NC_011205.1 identified by match to protein family HMM PF02302; inner membrane protein 980363 439851001100 SeD_A0989 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002214849.1 980043 D 439851 CDS YP_002214850.1 198243794 980373..981860 1 NC_011205.1 identified by match to protein family HMM PF00884; sulfatase 981860 439851001101 SeD_A0990 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfatase YP_002214850.1 980373 D 439851 CDS YP_002214851.1 198243138 complement(982068..982799) 1 NC_011205.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; arginine ABC transporter substrate-binding protein 982799 artJ 439851001102 artJ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arginine ABC transporter substrate-binding protein YP_002214851.1 982068 R 439851 CDS YP_002214852.1 198242631 complement(983036..983704) 1 NC_011205.1 with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 983704 artM 439851001103 artM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arginine transporter permease subunit ArtM YP_002214852.1 983036 R 439851 CDS YP_002214853.1 198242126 complement(983704..984420) 1 NC_011205.1 with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 984420 artQ 439851001104 artQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arginine transporter permease subunit ArtQ YP_002214853.1 983704 R 439851 CDS YP_002214854.1 198245831 complement(984427..985158) 1 NC_011205.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; arginine ABC transporter substrate-binding protein 985158 artI 439851001105 artI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arginine ABC transporter substrate-binding protein YP_002214854.1 984427 R 439851 CDS YP_002214855.1 198241826 complement(985176..985904) 1 NC_011205.1 With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit 985904 artP 439851001106 artP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arginine transporter ATP-binding subunit YP_002214855.1 985176 R 439851 CDS YP_002214856.1 198242328 complement(986134..986649) 1 NC_011205.1 induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; lipoprotein 986649 439851001107 SeD_A0996 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein YP_002214856.1 986134 R 439851 CDS YP_002214857.1 198245351 986777..987100 1 NC_011205.1 identified by match to protein family HMM PF01906; hypothetical protein 987100 439851001108 SeD_A0997 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214857.1 986777 D 439851 CDS YP_002214858.1 198244737 987097..987927 1 NC_011205.1 identified by match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase AmiD 987927 439851001109 SeD_A0998 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N-acetylmuramoyl-L-alanine amidase AmiD YP_002214858.1 987097 D 439851 CDS YP_002214859.1 198244265 complement(987924..988937) 1 NC_011205.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family protein 988937 439851001110 SeD_A0999 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NAD dependent epimerase/dehydratase family protein YP_002214859.1 987924 R 439851 CDS YP_002214860.1 198243271 complement(989033..990466) 1 NC_011205.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; NAD dependent epimerase/dehydratase family protein 990466 439851001111 SeD_A1000 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NAD dependent epimerase/dehydratase family protein YP_002214860.1 989033 R 439851 CDS YP_002214861.1 198243778 complement(990477..991478) 1 NC_011205.1 low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine; L-threonine aldolase 991478 ltaE 439851001112 ltaE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-threonine aldolase YP_002214861.1 990477 R 439851 CDS YP_002214862.1 198242657 complement(991517..993235) 1 NC_011205.1 catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase 993235 poxB 439851001113 poxB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pyruvate dehydrogenase YP_002214862.1 991517 R 439851 CDS YP_002214863.1 198245608 complement(993394..994365) 1 NC_011205.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; HCP oxidoreductase, NADH-dependent 994365 hcr 439851001114 hcr Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 HCP oxidoreductase, NADH-dependent YP_002214863.1 993394 R 439851 CDS YP_002214864.1 198245246 complement(994374..996026) 1 NC_011205.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 996026 hcp 439851001115 hcp Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydroxylamine reductase YP_002214864.1 994374 R 439851 CDS YP_002214865.1 198245918 complement(996170..997069) 1 NC_011205.1 identified by match to protein family HMM PF03956; hypothetical protein 997069 439851001116 SeD_A1005 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214865.1 996170 R 439851 CDS YP_002214866.1 198242354 997271..998929 1 NC_011205.1 hypothetical protein 998929 439851001117 SeD_A1006 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214866.1 997271 D 439851 CDS YP_002214867.1 198241910 complement(998926..999876) 1 NC_011205.1 identified by match to protein family HMM PF04393; hypothetical protein 999876 439851001118 SeD_A1007 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214867.1 998926 R 439851 CDS YP_002214868.1 198243163 1000022..1001140 1 NC_011205.1 confers macrolide resistance via active drug efflux; macrolide transporter subunit MacA 1001140 439851001119 SeD_A1008 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 macrolide transporter subunit MacA YP_002214868.1 1000022 D 439851 CDS YP_002214869.1 198244525 1001137..1003083 1 NC_011205.1 with MacA is involved in the export of macrolide; macrolide transporter ATP-binding /permease protein 1003083 439851001120 SeD_A1009 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 macrolide transporter ATP-binding /permease protein YP_002214869.1 1001137 D 439851 CDS YP_002214870.1 198243774 1003115..1003258 1 NC_011205.1 identified by glimmer; hypothetical protein 1003258 439851001121 SeD_A1010 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214870.1 1003115 D 439851 CDS YP_002214871.1 198245012 complement(1003213..1003434) 1 NC_011205.1 identified by match to protein family HMM PF00313; match to protein family HMM TIGR02381; cold shock domain-containing protein CspD 1003434 cspD 439851001122 cspD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cold shock domain-containing protein CspD YP_002214871.1 1003213 R 439851 CDS YP_002214872.1 198243258 1003758..1004078 1 NC_011205.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 1004078 clpS 439851001123 clpS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent Clp protease adaptor protein ClpS YP_002214872.1 1003758 D 439851 CDS YP_002214873.1 198245341 1004109..1006385 1 NC_011205.1 ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 1006385 clpA 439851001124 clpA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent Clp protease ATP-binding subunit YP_002214873.1 1004109 D 439851 CDS YP_002214874.1 198244800 complement(1006957..1007334) 1 NC_011205.1 phage integrase 1007334 439851001125 SeD_A1014 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage integrase YP_002214874.1 1006957 R 439851 CDS YP_002214875.1 198245014 complement(1007742..1008419) 1 NC_011205.1 identified by match to protein family HMM PF00857; hypothetical protein 1008419 439851001127 SeD_A1016 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214875.1 1007742 R 439851 CDS YP_002214876.1 198244505 complement(1008439..1009299) 1 NC_011205.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726; pirin 1009299 439851001128 SeD_A1017 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pirin YP_002214876.1 1008439 R 439851 CDS YP_002214877.1 198243475 1009408..1010319 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1010319 439851001129 SeD_A1018 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR family transcriptional regulator YP_002214877.1 1009408 D 439851 CDS YP_002214878.1 198243007 complement(1010410..1010628) 1 NC_011205.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1010628 infA 439851001130 infA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 translation initiation factor IF-1 YP_002214878.1 1010410 R 439851 CDS YP_002214879.1 198245408 complement(1010940..1011644) 1 NC_011205.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 1011644 aat 439851001131 aat Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 leucyl/phenylalanyl-tRNA--protein transferase YP_002214879.1 1010940 R 439851 CDS YP_002214880.1 198245775 complement(1011689..1013410) 1 NC_011205.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 1013410 cydC 439851001132 cydC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cysteine/glutathione ABC transporter membrane/ATP-binding component YP_002214880.1 1011689 R 439851 CDS YP_002214881.1 198242135 complement(1013411..1015177) 1 NC_011205.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 1015177 cydD 439851001133 cydD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cysteine/glutathione ABC transporter membrane/ATP-binding component YP_002214881.1 1013411 R 439851 CDS YP_002214882.1 198242483 complement(1015291..1016259) 1 NC_011205.1 catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; thioredoxin reductase 1016259 trxB 439851001134 trxB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thioredoxin reductase YP_002214882.1 1015291 R 439851 CDS YP_002214883.1 198242823 1016805..1017299 1 NC_011205.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 1017299 lrp 439851001135 lrp Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 leucine-responsive transcriptional regulator YP_002214883.1 1016805 D 439851 CDS YP_002214884.1 198243571 1017434..1021399 1 NC_011205.1 DNA-binding membrane protein required for chromosome resolution and partitioning; DNA translocase FtsK 1021399 439851001136 SeD_A1025 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA translocase FtsK YP_002214884.1 1017434 D 439851 CDS YP_002214885.1 198243173 1021542..1022153 1 NC_011205.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 1022153 lolA 439851001137 lolA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer-membrane lipoprotein carrier protein YP_002214885.1 1021542 D 439851 CDS YP_002214886.1 198244942 1022163..1023506 1 NC_011205.1 identified by match to protein family HMM PF00004; recombination factor protein RarA 1023506 439851001138 SeD_A1027 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 recombination factor protein RarA YP_002214886.1 1022163 D 439851 CDS YP_002214887.1 198244710 1023765..1025057 1 NC_011205.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1025057 serS 439851001139 serS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 seryl-tRNA synthetase YP_002214887.1 1023765 D 439851 CDS YP_002214888.1 198244293 1025294..1027738 1 NC_011205.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase chain a 1027738 439851001140 SeD_A1029 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anaerobic dimethyl sulfoxide reductase chain a YP_002214888.1 1025294 D 439851 CDS YP_002214889.1 198245763 1027749..1028366 1 NC_011205.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; anaerobic dimethyl sulfoxide reductase subunit B 1028366 dmsB_1 439851001141 dmsB_1 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anaerobic dimethyl sulfoxide reductase subunit B YP_002214889.1 1027749 D 439851 CDS YP_002214890.1 198245201 1028368..1029231 1 NC_011205.1 identified by match to protein family HMM PF04976; anaerobic dimethyl sulfoxide reductase subunit C 1029231 dmsC1 439851001142 dmsC1 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anaerobic dimethyl sulfoxide reductase subunit C YP_002214890.1 1028368 D 439851 CDS YP_002214891.1 198244966 1029581..1030729 1 NC_011205.1 identified by match to protein family HMM PF07690; MFS family transporter protein 1030729 439851001143 SeD_A1032 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 MFS family transporter protein YP_002214891.1 1029581 D 439851 CDS YP_002214892.1 198244368 1030947..1032368 1 NC_011205.1 identified by match to protein family HMM PF00324; inner membrane transporter YcaM 1032368 439851001144 SeD_A1033 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane transporter YcaM YP_002214892.1 1030947 D 439851 CDS YP_002214893.1 198246171 complement(1032661..1033458) 1 NC_011205.1 activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 1033458 pflA 439851001145 pflA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pyruvate formate lyase-activating enzyme 1 YP_002214893.1 1032661 R 439851 CDS YP_002214894.1 198245675 1033586..1033735 1 NC_011205.1 hypothetical protein 1033735 439851001146 SeD_A1035 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214894.1 1033586 D 439851 CDS YP_002214895.1 198243633 1034034..1034993 1 NC_011205.1 identified by glimmer; hypothetical protein 1034993 439851001147 SeD_A1036 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214895.1 1034034 D 439851 CDS YP_002214896.1 198241907 complement(1035069..1037351) 1 NC_011205.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase 1037351 pflB2 439851001148 pflB2 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate acetyltransferase YP_002214896.1 1035069 R 439851 CDS YP_002214897.1 198242555 complement(1037411..1038226) 1 NC_011205.1 identified by match to protein family HMM PF01226; match to protein family HMM TIGR00790; formate transporter FocA 1038226 439851001149 SeD_A1038 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate transporter FocA YP_002214897.1 1037411 R 439851 CDS YP_002214898.1 198245525 complement(1038673..1040433) 1 NC_011205.1 identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702; hypothetical protein 1040433 439851001150 SeD_A1039 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214898.1 1038673 R 439851 CDS YP_002214899.1 198242445 1040570..1041262 1 NC_011205.1 identified by match to protein family HMM PF04239; hypothetical protein 1041262 439851001151 SeD_A1040 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214899.1 1040570 D 439851 CDS YP_002214900.1 198245493 1041448..1042536 1 NC_011205.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1042536 serC 439851001152 serC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoserine aminotransferase YP_002214900.1 1041448 D 439851 CDS YP_002214901.1 198245291 complement(1042495..1042608) 1 NC_011205.1 identified by glimmer; hypothetical protein 1042608 439851001153 SeD_A1043 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214901.1 1042495 R 439851 CDS YP_002214902.1 198246031 1042607..1043890 1 NC_011205.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1043890 aroA 439851001154 aroA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-phosphoshikimate 1-carboxyvinyltransferase YP_002214902.1 1042607 D 439851 CDS YP_002214903.1 198244859 1044033..1044794 1 NC_011205.1 identified by match to protein family HMM PF01435; peptidase M48, Ste24p 1044794 439851001155 SeD_A1044 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidase M48, Ste24p YP_002214903.1 1044033 D 439851 CDS YP_002214904.1 198243342 1044967..1045650 1 NC_011205.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1045650 cmk 439851001156 cmk Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytidylate kinase YP_002214904.1 1044967 D 439851 CDS YP_002214905.1 198243294 1045764..1047437 1 NC_011205.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1047437 rpsA 439851001157 rpsA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S1 YP_002214905.1 1045764 D 439851 CDS YP_002214906.1 198243808 1047593..1047877 1 NC_011205.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1047877 ihfB 439851001158 ihfB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 integration host factor subunit beta YP_002214906.1 1047593 D 439851 CDS YP_002214907.1 198244225 1048158..1050371 1 NC_011205.1 identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361; hypothetical protein 1050371 439851001159 SeD_A1048 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214907.1 1048158 D 439851 CDS YP_002214908.1 198244768 1050408..1052156 1 NC_011205.1 involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease protein 1052156 msbA 439851001160 msbA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipid transporter ATP-binding/permease protein YP_002214908.1 1050408 D 439851 CDS YP_002214909.1 198245269 1052153..1053130 1 NC_011205.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1053130 lpxK 439851001161 lpxK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tetraacyldisaccharide 4'-kinase YP_002214909.1 1052153 D 439851 CDS YP_002214910.1 198245764 1053174..1054406 1 NC_011205.1 identified by match to protein family HMM PF06224; hypothetical protein 1054406 439851001162 SeD_A1051 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214910.1 1053174 D 439851 CDS YP_002214911.1 198244229 1054458..1054640 1 NC_011205.1 identified by match to protein family HMM PF03966; hypothetical protein 1054640 439851001163 SeD_A1052 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214911.1 1054458 D 439851 CDS YP_002214912.1 198244722 1054637..1055383 1 NC_011205.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1055383 kdsB 439851001164 kdsB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-deoxy-manno-octulosonate cytidylyltransferase YP_002214912.1 1054637 D 439851 CDS YP_002214913.1 198245707 1055594..1056487 1 NC_011205.1 hypothetical protein 1056487 439851001165 SeD_A1054 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214913.1 1055594 D 439851 CDS YP_002214914.1 198245262 complement(1056467..1057243) 1 NC_011205.1 identified by match to protein family HMM PF02698; hypothetical protein 1057243 439851001166 SeD_A1055 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214914.1 1056467 R 439851 CDS YP_002214915.1 198246189 1057379..1058182 1 NC_011205.1 involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; metallothionein SmtA 1058182 smtA 439851001167 smtA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 metallothionein SmtA YP_002214915.1 1057379 D 439851 CDS YP_002214916.1 198242280 1058175..1059497 1 NC_011205.1 acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 1059497 mukF 439851001168 mukF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 condesin subunit F YP_002214916.1 1058175 D 439851 CDS YP_002214917.1 198242642 1059478..1060182 1 NC_011205.1 acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 1060182 mukE 439851001169 mukE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 condesin subunit E YP_002214917.1 1059478 D 439851 CDS YP_002214918.1 198243290 1060182..1064636 1 NC_011205.1 SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB 1064636 mukB 439851001170 mukB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell division protein MukB YP_002214918.1 1060182 D 439851 CDS YP_002214919.1 198244692 1064981..1066831 1 NC_011205.1 identified by match to protein family HMM PF01471; hypothetical protein 1066831 439851001171 SeD_A1060 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214919.1 1064981 D 439851 CDS YP_002214920.1 198245161 1067091..1067639 1 NC_011205.1 identified by match to protein family HMM PF05951; match to protein family HMM PF08291; hypothetical protein 1067639 439851001172 SeD_A1061 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214920.1 1067091 D 439851 CDS YP_002214921.1 198246004 1067667..1068314 1 NC_011205.1 identified by match to protein family HMM PF00753; hydroxyacylglutathione hydrolase 1068314 439851001173 SeD_A1062 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydroxyacylglutathione hydrolase YP_002214921.1 1067667 D 439851 CDS YP_002214922.1 198241979 complement(1068376..1069566) 1 NC_011205.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1069566 aspC 439851001174 aspC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aromatic amino acid aminotransferase YP_002214922.1 1068376 R 439851 CDS YP_002214923.1 198242146 complement(1069751..1070842) 1 NC_011205.1 identified by match to protein family HMM PF00267; outer membrane protein F 1070842 439851001175 SeD_A1064 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein F YP_002214923.1 1069751 R 439851 CDS YP_002214924.1 198242587 1071155..1071271 1 NC_011205.1 identified by glimmer; hypothetical protein 1071271 439851001176 SeD_A1065 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214924.1 1071155 D 439851 CDS YP_002214925.1 198243992 complement(1071360..1071479) 1 NC_011205.1 identified by glimmer; hypothetical protein 1071479 439851001177 SeD_A1066 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214925.1 1071360 R 439851 CDS YP_002214926.1 198243330 complement(1071436..1072836) 1 NC_011205.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 1072836 asnC 439851001178 asnC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 asparaginyl-tRNA synthetase YP_002214926.1 1071436 R 439851 CDS YP_002214927.1 198243300 complement(1073037..1073498) 1 NC_011205.1 identified by match to protein family HMM PF01037; match to protein family HMM PF08279; leucine regulator 1073498 439851001179 SeD_A1068 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 leucine regulator YP_002214927.1 1073037 R 439851 CDS YP_002214928.1 198242625 complement(1073562..1073717) 1 NC_011205.1 identified by glimmer; hypothetical protein 1073717 439851001180 SeD_A1069 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214928.1 1073562 R 439851 CDS YP_002214929.1 198242145 1073816..1075030 1 NC_011205.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 1075030 439851001181 SeD_A1070 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 diaminopropionate ammonia-lyase YP_002214929.1 1073816 D 439851 CDS YP_002214930.1 198245342 1075104..1075262 1 NC_011205.1 hypothetical protein 1075262 439851001182 SeD_A1071 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214930.1 1075104 D 439851 CDS YP_002214931.1 198244164 1075276..1076712 1 NC_011205.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; Lrp family transcriptional regulator 1076712 439851001183 SeD_A1072 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Lrp family transcriptional regulator YP_002214931.1 1075276 D 439851 CDS YP_002214932.1 198243495 complement(1076790..1077992) 1 NC_011205.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1077992 pncB 439851001184 pncB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nicotinate phosphoribosyltransferase YP_002214932.1 1076790 R 439851 CDS YP_002214933.1 198243350 complement(1078187..1079527) 1 NC_011205.1 identified by match to protein family HMM PF00589; integrase 1079527 439851001185 SeD_A1074 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 integrase YP_002214933.1 1078187 R 439851 CDS YP_002214934.1 198242680 complement(1079524..1079772) 1 NC_011205.1 identified by match to protein family HMM PF06806; excisionase 1079772 439851001186 SeD_A1075 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 excisionase YP_002214934.1 1079524 R 439851 CDS YP_002214935.1 198243390 complement(1079813..1080052) 1 NC_011205.1 hypothetical protein 1080052 439851001187 SeD_A1076 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214935.1 1079813 R 439851 CDS YP_002214936.1 198243262 complement(1080095..1080571) 1 NC_011205.1 gifsy-2 prophage RecT 1080571 439851001188 SeD_A1077 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gifsy-2 prophage RecT YP_002214936.1 1080095 R 439851 CDS YP_002214937.1 198242606 complement(1081217..1084405) 1 NC_011205.1 identified by match to protein family HMM PF06630; gifsy-1 prophage RecE 1084405 439851001189 SeD_A1078 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gifsy-1 prophage RecE YP_002214937.1 1081217 R 439851 CDS YP_002214938.1 198243677 complement(1084546..1084716) 1 NC_011205.1 hypothetical protein 1084716 439851001190 SeD_A1079 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214938.1 1084546 R 439851 CDS YP_002214939.1 198246125 complement(1084709..1084825) 1 NC_011205.1 hypothetical protein 1084825 439851001191 SeD_A1080 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214939.1 1084709 R 439851 CDS YP_002214940.1 198245768 1086076..1086225 1 NC_011205.1 gifsy-1 prophage cI 1086225 439851001192 SeD_A1081 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gifsy-1 prophage cI YP_002214940.1 1086076 D 439851 CDS YP_002214941.1 198244288 1086216..1086332 1 NC_011205.1 identified by glimmer; hypothetical protein 1086332 439851001193 SeD_A1082 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214941.1 1086216 D 439851 CDS YP_002214942.1 198244802 1086310..1087293 1 NC_011205.1 identified by match to protein family HMM PF04492; match to protein family HMM TIGR01610; gifsy-1 prophage PrpO 1087293 439851001194 SeD_A1083 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gifsy-1 prophage PrpO YP_002214942.1 1086310 D 439851 CDS YP_002214943.1 198243311 1087296..1088045 1 NC_011205.1 identified by match to protein family HMM PF01695; replication protein 1088045 439851001195 SeD_A1084 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 replication protein YP_002214943.1 1087296 D 439851 CDS YP_002214944.1 198243801 1088086..1088403 1 NC_011205.1 identified by match to protein family HMM PF06163; DNA-binding protein 1088403 439851001196 SeD_A1085 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding protein YP_002214944.1 1088086 D 439851 CDS YP_002214945.1 198242712 1088400..1088924 1 NC_011205.1 hypothetical protein 1088924 439851001197 SeD_A1086 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214945.1 1088400 D 439851 CDS YP_002214946.1 198245470 1088924..1089397 1 NC_011205.1 DNA N-4 cytosine methyltransferase M.NgoMXV 1089397 439851001198 SeD_A1087 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA N-4 cytosine methyltransferase M.NgoMXV YP_002214946.1 1088924 D 439851 CDS YP_002214947.1 198245816 1089401..1089973 1 NC_011205.1 identified by match to protein family HMM PF04447; hypothetical protein 1089973 439851001199 SeD_A1088 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214947.1 1089401 D 439851 CDS YP_002214948.1 198244492 1090178..1090333 1 NC_011205.1 bacteriophage protein 1090333 439851001200 SeD_A1089 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bacteriophage protein YP_002214948.1 1090178 D 439851 CDS YP_002214949.1 198244840 1090489..1090728 1 NC_011205.1 identified by match to protein family HMM PF06183; hypothetical protein 1090728 439851001201 SeD_A1090 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214949.1 1090489 D 439851 CDS YP_002214950.1 198242954 1091063..1091665 1 NC_011205.1 identified by match to protein family HMM PF07105; gifsy-2 prophage protein 1091665 439851001202 SeD_A1091 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gifsy-2 prophage protein YP_002214950.1 1091063 D 439851 CDS YP_002214951.1 198242453 1091665..1091871 1 NC_011205.1 hypothetical protein 1091871 439851001203 SeD_A1092 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214951.1 1091665 D 439851 CDS YP_002214952.1 198245230 1091874..1092485 1 NC_011205.1 identified by match to protein family HMM PF05766; bacteriophage Lambda NinG protein 1092485 439851001204 SeD_A1093 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bacteriophage Lambda NinG protein YP_002214952.1 1091874 D 439851 CDS YP_002214953.1 198245433 1092618..1093415 1 NC_011205.1 antitermination protein Q 1093415 439851001205 SeD_A1094 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 antitermination protein Q YP_002214953.1 1092618 D 439851 CDS YP_002214954.1 198244248 1093814..1094161 1 NC_011205.1 identified by match to protein family HMM PF05106; match to protein family HMM TIGR01594; phage holin, lambda family 1094161 439851001206 SeD_A1095 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage holin, lambda family YP_002214954.1 1093814 D 439851 CDS YP_002214955.1 198242009 1094164..1094778 1 NC_011205.1 lytic enzyme 1094778 439851001207 SeD_A1096 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lytic enzyme YP_002214955.1 1094164 D 439851 CDS YP_002214956.1 198242531 1094775..1095326 1 NC_011205.1 hypothetical protein 1095326 439851001208 SeD_A1097 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214956.1 1094775 D 439851 CDS YP_002214957.1 198242906 1095613..1095729 1 NC_011205.1 identified by glimmer; hypothetical protein 1095729 439851001209 SeD_A1098 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214957.1 1095613 D 439851 CDS YP_002214958.1 198243665 1095791..1096765 1 NC_011205.1 hypothetical protein 1096765 439851001210 SeD_A1099 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214958.1 1095791 D 439851 CDS YP_002214959.1 198242430 1096755..1098026 1 NC_011205.1 hypothetical protein 1098026 439851001211 SeD_A1100 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214959.1 1096755 D 439851 CDS YP_002214960.1 198245340 1098026..1099456 1 NC_011205.1 hypothetical protein 1099456 439851001212 SeD_A1101 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214960.1 1098026 D 439851 CDS YP_002214961.1 198244010 1099428..1100303 1 NC_011205.1 hypothetical protein 1100303 439851001213 SeD_A1102 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214961.1 1099428 D 439851 CDS YP_002214962.1 198241782 1100304..1101878 1 NC_011205.1 identified by match to protein family HMM PF00293; nudix hydrolase 1101878 439851001214 SeD_A1103 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nudix hydrolase YP_002214962.1 1100304 D 439851 CDS YP_002214963.1 198244438 1101899..1102771 1 NC_011205.1 hypothetical protein 1102771 439851001215 SeD_A1104 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214963.1 1101899 D 439851 CDS YP_002214964.1 198245065 1102789..1103820 1 NC_011205.1 hypothetical protein 1103820 439851001216 SeD_A1105 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214964.1 1102789 D 439851 CDS YP_002214965.1 198244758 1103885..1104370 1 NC_011205.1 hypothetical protein 1104370 439851001217 SeD_A1106 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214965.1 1103885 D 439851 CDS YP_002214966.1 198245353 1104383..1104808 1 NC_011205.1 hypothetical protein 1104808 439851001218 SeD_A1107 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214966.1 1104383 D 439851 CDS YP_002214967.1 198244239 1104793..1105236 1 NC_011205.1 hypothetical protein 1105236 439851001219 SeD_A1108 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214967.1 1104793 D 439851 CDS YP_002214968.1 198244420 1105220..1106158 1 NC_011205.1 hypothetical protein 1106158 439851001220 SeD_A1109 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214968.1 1105220 D 439851 CDS YP_002214969.1 198242655 1106163..1107557 1 NC_011205.1 hypothetical protein 1107557 439851001221 SeD_A1110 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214969.1 1106163 D 439851 CDS YP_002214970.1 198243448 1107561..1107998 1 NC_011205.1 hypothetical protein 1107998 439851001222 SeD_A1111 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214970.1 1107561 D 439851 CDS YP_002214971.1 198242085 1107998..1108585 1 NC_011205.1 hypothetical protein 1108585 439851001223 SeD_A1112 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214971.1 1107998 D 439851 CDS YP_002214972.1 198242696 complement(1108594..1108725) 1 NC_011205.1 identified by glimmer; hypothetical protein 1108725 439851001224 SeD_A1114 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214972.1 1108594 R 439851 CDS YP_002214973.1 198245317 1108709..1110763 1 NC_011205.1 hypothetical protein 1110763 439851001225 SeD_A1113 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214973.1 1108709 D 439851 CDS YP_002214974.1 198245887 1110763..1111260 1 NC_011205.1 hypothetical protein 1111260 439851001226 SeD_A1115 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214974.1 1110763 D 439851 CDS YP_002214975.1 198242527 1111318..1111479 1 NC_011205.1 hypothetical protein 1111479 439851001227 SeD_A1116 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214975.1 1111318 D 439851 CDS YP_002214976.1 198245985 1111521..1111751 1 NC_011205.1 hypothetical protein 1111751 439851001228 SeD_A1117 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214976.1 1111521 D 439851 CDS YP_002214977.1 198243005 1111751..1112803 1 NC_011205.1 hypothetical protein 1112803 439851001229 SeD_A1118 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214977.1 1111751 D 439851 CDS YP_002214978.1 198242478 1112800..1113516 1 NC_011205.1 hypothetical protein 1113516 439851001230 SeD_A1119 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214978.1 1112800 D 439851 CDS YP_002214979.1 198244531 1113513..1113845 1 NC_011205.1 hypothetical protein 1113845 439851001231 SeD_A1120 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214979.1 1113513 D 439851 CDS YP_002214980.1 198243497 1113842..1115068 1 NC_011205.1 hypothetical protein 1115068 439851001232 SeD_A1121 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214980.1 1113842 D 439851 CDS YP_002214981.1 198245055 1115052..1115678 1 NC_011205.1 hypothetical protein 1115678 439851001233 SeD_A1122 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214981.1 1115052 D 439851 CDS YP_002214982.1 198244544 1115675..1117384 1 NC_011205.1 identified by match to protein family HMM PF07484; side tail fiber protein 1117384 439851001234 SeD_A1123 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 side tail fiber protein YP_002214982.1 1115675 D 439851 CDS YP_002214983.1 198241967 1117384..1117965 1 NC_011205.1 identified by match to protein family HMM PF02413; tail fiber assembly like-protein 1117965 439851001235 SeD_A1124 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tail fiber assembly like-protein YP_002214983.1 1117384 D 439851 CDS YP_002214984.1 198245534 complement(1118112..1118348) 1 NC_011205.1 identified by glimmer; hypothetical protein 1118348 439851001236 SeD_A1125 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214984.1 1118112 R 439851 CDS YP_002214985.1 198245372 1118443..1119411 1 NC_011205.1 secreted effector protein 1119411 439851001237 SeD_A1126 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secreted effector protein YP_002214985.1 1118443 D 439851 CDS YP_002214986.1 198245854 complement(1120059..1120685) 1 NC_011205.1 identified by match to protein family HMM PF02586; hypothetical protein 1120685 439851001239 SeD_A1129 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214986.1 1120059 R 439851 CDS YP_002214987.1 198245393 1120667..1120816 1 NC_011205.1 hypothetical protein 1120816 439851001240 SeD_A1128 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214987.1 1120667 D 439851 CDS YP_002214988.1 198243406 complement(1121045..1121731) 1 NC_011205.1 gifsy-2 prophage protein 1121731 439851001241 SeD_A1130 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gifsy-2 prophage protein YP_002214988.1 1121045 R 439851 CDS YP_002214989.1 198244119 complement(1122002..1122193) 1 NC_011205.1 gifsy-2 prophage MsgA 1122193 439851001242 SeD_A1131 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gifsy-2 prophage MsgA YP_002214989.1 1122002 R 439851 CDS YP_002214990.1 198243924 1122620..1125232 1 NC_011205.1 identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414; aminopeptidase 1125232 pepN 439851001243 pepN Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aminopeptidase YP_002214990.1 1122620 D 439851 CDS YP_002214991.1 198243233 1125440..1126450 1 NC_011205.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1126450 pyrD 439851001244 pyrD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dihydroorotate dehydrogenase 2 YP_002214991.1 1125440 D 439851 CDS YP_002214992.1 198242261 1126616..1127158 1 NC_011205.1 identified by match to protein family HMM PF07126; hypothetical protein 1127158 439851001245 SeD_A1134 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214992.1 1126616 D 439851 CDS YP_002214993.1 198245155 complement(1127155..1128264) 1 NC_011205.1 identified by match to protein family HMM PF00111; match to protein family HMM PF03473; match to protein family HMM PF03476; MOSC domain-containing protein 1128264 439851001246 SeD_A1135 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 MOSC domain-containing protein YP_002214993.1 1127155 R 439851 CDS YP_002214994.1 198242133 1128363..1130471 1 NC_011205.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1130471 rlmL 439851001247 rlmL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 23S rRNA m(2)G2445 methyltransferase YP_002214994.1 1128363 D 439851 CDS YP_002214995.1 198242644 1130484..1132391 1 NC_011205.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase component 1132391 439851001248 SeD_A1137 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter ATPase component YP_002214995.1 1130484 D 439851 CDS YP_002214996.1 198242144 1132406..1133659 1 NC_011205.1 identified by match to protein family HMM PF04403; match to protein family HMM TIGR00155; paraquat-inducible protein A 1133659 439851001249 SeD_A1138 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 paraquat-inducible protein A YP_002214996.1 1132406 D 439851 CDS YP_002214997.1 198243917 1133664..1135304 1 NC_011205.1 identified by match to protein family HMM PF02470; paraquat-inducible protein B 1135304 439851001250 SeD_A1139 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 paraquat-inducible protein B YP_002214997.1 1133664 D 439851 CDS YP_002214998.1 198244695 1135301..1135864 1 NC_011205.1 identified by match to protein family HMM PF03886; lipoprotein 1135864 439851001251 SeD_A1140 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein YP_002214998.1 1135301 D 439851 CDS YP_002214999.1 198243387 complement(1135819..1135956) 1 NC_011205.1 identified by glimmer; hypothetical protein 1135956 439851001252 SeD_A1141 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002214999.1 1135819 R 439851 CDS YP_002215000.1 198244093 complement(1136387..1136905) 1 NC_011205.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 1136905 fabA 439851001253 fabA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-hydroxydecanoyl-ACP dehydratase YP_002215000.1 1136387 R 439851 CDS YP_002215001.1 198245826 complement(1136974..1138734) 1 NC_011205.1 identified by match to protein family HMM PF05362; lon protease (S16) proteolytic domain-containing protein 1138734 439851001254 SeD_A1143 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lon protease (S16) proteolytic domain-containing protein YP_002215001.1 1136974 R 439851 CDS YP_002215002.1 198245310 1138920..1139372 1 NC_011205.1 identified by match to protein family HMM PF06303; hypothetical protein 1139372 439851001255 SeD_A1144 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215002.1 1138920 D 439851 CDS YP_002215003.1 198244081 complement(1139444..1140553) 1 NC_011205.1 OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d; outer membrane protein A 1140553 ompA 439851001256 ompA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein A YP_002215003.1 1139444 R 439851 CDS YP_002215004.1 198244562 complement(1140853..1141362) 1 NC_011205.1 identified by match to protein family HMM PF03846; match to protein family HMM TIGR00623; SOS cell division inhibitor 1141362 439851001257 SeD_A1146 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 SOS cell division inhibitor YP_002215004.1 1140853 R 439851 CDS YP_002215005.1 198245255 1141579..1142184 1 NC_011205.1 identified by match to protein family HMM PF04993; match to protein family HMM PF04994; TfoX family protein 1142184 439851001258 SeD_A1147 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 TfoX family protein YP_002215005.1 1141579 D 439851 CDS YP_002215006.1 198246184 complement(1142171..1144324) 1 NC_011205.1 identified by match to protein family HMM PF05976; match to protein family HMM TIGR01666; match to protein family HMM TIGR01667; hypothetical protein 1144324 yccS 439851001259 yccS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215006.1 1142171 R 439851 CDS YP_002215007.1 198242366 complement(1144343..1144789) 1 NC_011205.1 identified by match to protein family HMM PF03733; hypothetical protein 1144789 439851001260 SeD_A1149 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215007.1 1144343 R 439851 CDS YP_002215008.1 198241992 1144913..1146967 1 NC_011205.1 catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 1146967 helD 439851001261 helD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA helicase IV YP_002215008.1 1144913 D 439851 CDS YP_002215009.1 198243396 complement(1147003..1147461) 1 NC_011205.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1147461 mgsA 439851001262 mgsA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methylglyoxal synthase YP_002215009.1 1147003 R 439851 CDS YP_002215010.1 198242622 complement(1147556..1148218) 1 NC_011205.1 hypothetical protein 1148218 439851001263 SeD_A1152 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215010.1 1147556 R 439851 CDS YP_002215011.1 198244755 complement(1148850..1149167) 1 NC_011205.1 identified by match to protein family HMM PF08755; match to protein family HMM TIGR02097; heat shock protein HspQ 1149167 439851001265 SeD_A1154 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 heat shock protein HspQ YP_002215011.1 1148850 R 439851 CDS YP_002215012.1 198242027 complement(1149225..1150436) 1 NC_011205.1 hypothetical protein 1150436 439851001266 SeD_A1155 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215012.1 1149225 R 439851 CDS YP_002215013.1 198242381 1150651..1151199 1 NC_011205.1 identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481; hypothetical protein 1151199 439851001267 SeD_A1156 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215013.1 1150651 D 439851 CDS YP_002215014.1 198244432 1151216..1152004 1 NC_011205.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1152004 439851001268 SeD_A1157 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 AraC family transcriptional regulator YP_002215014.1 1151216 D 439851 CDS YP_002215015.1 198245679 1152053..1152334 1 NC_011205.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 1152334 439851001269 SeD_A1158 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acylphosphatase YP_002215015.1 1152053 D 439851 CDS YP_002215016.1 198244886 complement(1152331..1152660) 1 NC_011205.1 transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein TusE 1152660 439851001270 SeD_A1159 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfur transfer protein TusE YP_002215016.1 1152331 R 439851 CDS YP_002215017.1 198246177 complement(1152747..1153406) 1 NC_011205.1 identified by match to protein family HMM PF01027; hypothetical protein 1153406 439851001271 SeD_A1160 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215017.1 1152747 R 439851 CDS YP_002215018.1 198242357 1153529..1153681 1 NC_011205.1 identified by glimmer; hypothetical protein 1153681 439851001272 SeD_A1161 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215018.1 1153529 D 439851 CDS YP_002215019.1 198245165 complement(1154045..1154725) 1 NC_011205.1 identified by match to protein family HMM PF07108; hypothetical protein 1154725 439851001274 SeD_A1163 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215019.1 1154045 R 439851 CDS YP_002215020.1 198243562 complement(1154947..1155822) 1 NC_011205.1 identified by match to protein family HMM PF00805; hypothetical protein 1155822 439851001275 SeD_A1164 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215020.1 1154947 R 439851 CDS YP_002215021.1 198241945 1156082..1156360 1 NC_011205.1 inner membrane protein 1156360 439851001276 SeD_A1165 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002215021.1 1156082 D 439851 CDS YP_002215022.1 198241875 complement(1156370..1156711) 1 NC_011205.1 identified by match to protein family HMM PF07824; chaperone protein SigE 1156711 439851001277 SeD_A1166 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chaperone protein SigE YP_002215022.1 1156370 R 439851 CDS YP_002215023.1 198245937 complement(1156728..1158413) 1 NC_011205.1 identified by match to protein family HMM PF05925; inositol phosphate phosphatase SopB 1158413 439851001278 SeD_A1167 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inositol phosphate phosphatase SopB YP_002215023.1 1156728 R 439851 CDS YP_002215024.1 198242284 1158775..1158915 1 NC_011205.1 hypothetical protein 1158915 439851001279 SeD_A1168 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215024.1 1158775 D 439851 CDS YP_002215025.1 198242775 complement(1159135..1160697) 1 NC_011205.1 identified by match to protein family HMM PF03577; peptidase family C69 1160697 439851001280 SeD_A1169 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidase family C69 YP_002215025.1 1159135 R 439851 CDS YP_002215026.1 198244812 complement(1160777..1162141) 1 NC_011205.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386; heavy metal sensor kinase family protein 1162141 439851001281 SeD_A1170 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 heavy metal sensor kinase family protein YP_002215026.1 1160777 R 439851 CDS YP_002215027.1 198242939 complement(1162134..1162814) 1 NC_011205.1 induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistance to copper and several drugs when induced; transcriptional regulatory protein YedW 1162814 439851001282 SeD_A1171 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulatory protein YedW YP_002215027.1 1162134 R 439851 CDS YP_002215028.1 198244374 1162950..1163360 1 NC_011205.1 identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962; hydroxyisourate hydrolase 1163360 uraH 439851001283 uraH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydroxyisourate hydrolase YP_002215028.1 1162950 D 439851 CDS YP_002215029.1 198244194 complement(1163693..1164205) 1 NC_011205.1 identified by match to protein family HMM PF01613; match to protein family HMM TIGR02296; 4-hydroxyphenylacetate 3-monooxygenase, reductase component 1164205 hpaC 439851001284 hpaC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-hydroxyphenylacetate 3-monooxygenase, reductase component YP_002215029.1 1163693 R 439851 CDS YP_002215030.1 198245049 complement(1164223..1165785) 1 NC_011205.1 identified by match to protein family HMM PF03241; match to protein family HMM TIGR02310; 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component 1165785 hpaB 439851001285 hpaB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component YP_002215030.1 1164223 R 439851 CDS YP_002215031.1 198244532 complement(1166003..1166443) 1 NC_011205.1 identified by match to protein family HMM PF01047; match to protein family HMM TIGR02337; homoprotocatechuate degradation operon regulator, HpaR 1166443 hpaR 439851001286 hpaR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 homoprotocatechuate degradation operon regulator, HpaR YP_002215031.1 1166003 R 439851 CDS YP_002215032.1 198241961 1166719..1168008 1 NC_011205.1 identified by match to protein family HMM PF01557; match to protein family HMM TIGR02303; match to protein family HMM TIGR02305; 4-hydroxyphenylacetate degradation bifunctionalisomerase/decarboxylase 1168008 439851001287 SeD_A1176 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-hydroxyphenylacetate degradation bifunctionalisomerase/decarboxylase YP_002215032.1 1166719 D 439851 CDS YP_002215033.1 198245087 1168005..1169471 1 NC_011205.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR02299; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 1169471 hpaE 439851001288 hpaE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YP_002215033.1 1168005 D 439851 CDS YP_002215034.1 198243523 1169473..1170324 1 NC_011205.1 identified by match to protein family HMM PF02900; match to protein family HMM TIGR02298; 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1170324 hpaD 439851001289 hpaD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3,4-dihydroxyphenylacetate 2,3-dioxygenase YP_002215034.1 1169473 D 439851 CDS YP_002215035.1 198242019 1170334..1170714 1 NC_011205.1 identified by match to protein family HMM PF02962; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 1170714 hpcD 439851001290 hpcD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_002215035.1 1170334 D 439851 CDS YP_002215036.1 198245458 1170858..1171661 1 NC_011205.1 identified by match to protein family HMM PF01689; match to protein family HMM TIGR02312; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1171661 hpaH 439851001291 hpaH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-oxo-hepta-3-ene-1,7-dioic acid hydratase YP_002215036.1 1170858 D 439851 CDS YP_002215037.1 198246013 1171672..1172463 1 NC_011205.1 identified by match to protein family HMM PF03328; match to protein family HMM TIGR02311; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 1172463 hpaI 439851001292 hpaI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YP_002215037.1 1171672 D 439851 CDS YP_002215038.1 198246135 1172536..1173912 1 NC_011205.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR02332; 4-hydroxyphenylacetate permease 1173912 hpaX 439851001293 hpaX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-hydroxyphenylacetate permease YP_002215038.1 1172536 D 439851 CDS YP_002215039.1 198244355 1173922..1174818 1 NC_011205.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM TIGR02297; 4-hydroxyphenylacetate catabolism regulatory protein HpaA 1174818 hpaA 439851001294 hpaA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-hydroxyphenylacetate catabolism regulatory protein HpaA YP_002215039.1 1173922 D 439851 CDS YP_002215040.1 198244580 1174832..1175770 1 NC_011205.1 identified by match to protein family HMM PF00753; hypothetical protein 1175770 439851001295 SeD_A1184 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215040.1 1174832 D 439851 CDS YP_002215041.1 198242972 1176988..1177143 1 NC_011205.1 hypothetical protein 1177143 439851001296 SeD_A1185 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215041.1 1176988 D 439851 CDS YP_002215042.1 198242617 complement(1177194..1177499) 1 NC_011205.1 with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; chaperone-modulator protein CbpM 1177499 439851001297 SeD_A1186 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chaperone-modulator protein CbpM YP_002215042.1 1177194 R 439851 CDS YP_002215043.1 198245955 complement(1177499..1178419) 1 NC_011205.1 functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock; curved DNA-binding protein CbpA 1178419 439851001298 SeD_A1187 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 curved DNA-binding protein CbpA YP_002215043.1 1177499 R 439851 CDS YP_002215044.1 198244334 1178655..1179017 1 NC_011205.1 membrane protein, suppressor for copper-sensitivity A 1179017 439851001299 SeD_A1188 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 membrane protein, suppressor for copper-sensitivity A YP_002215044.1 1178655 D 439851 CDS YP_002215045.1 198244938 1179066..1180952 1 NC_011205.1 identified by match to protein family HMM PF02683; membrane protein, suppressor for copper-sensitivity B 1180952 439851001300 SeD_A1189 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 membrane protein, suppressor for copper-sensitivity B YP_002215045.1 1179066 D 439851 CDS YP_002215046.1 198244971 1180949..1181572 1 NC_011205.1 identified by match to protein family HMM PF01323; suppressor for copper-sensitivity C 1181572 439851001301 SeD_A1190 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 suppressor for copper-sensitivity C YP_002215046.1 1180949 D 439851 CDS YP_002215047.1 198243663 1181562..1182068 1 NC_011205.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534; suppressor for copper-sensitivity D 1182068 439851001302 SeD_A1191 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 suppressor for copper-sensitivity D YP_002215047.1 1181562 D 439851 CDS YP_002215048.1 198241748 1182201..1183442 1 NC_011205.1 identified by match to protein family HMM PF00328; glucose-1-phosphatase/inositol phosphatase 1183442 439851001303 SeD_A1192 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucose-1-phosphatase/inositol phosphatase YP_002215048.1 1182201 D 439851 CDS YP_002215049.1 198242370 complement(1183475..1183702) 1 NC_011205.1 hypothetical protein 1183702 439851001304 SeD_A1193 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215049.1 1183475 R 439851 CDS YP_002215050.1 198245512 complement(1183723..1184319) 1 NC_011205.1 stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA 1184319 wrbA 439851001305 wrbA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 TrpR binding protein WrbA YP_002215050.1 1183723 R 439851 CDS YP_002215051.1 198246161 1184704..1184871 1 NC_011205.1 hypothetical protein 1184871 439851001306 SeD_A1195 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215051.1 1184704 D 439851 CDS YP_002215052.1 198242495 1185008..1185646 1 NC_011205.1 identified by match to protein family HMM PF00440; match to protein family HMM PF08362; HTH-type transcriptional regulator RutR 1185646 439851001307 SeD_A1196 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 HTH-type transcriptional regulator RutR YP_002215052.1 1185008 D 439851 CDS YP_002215053.1 198244474 complement(1185643..1186038) 1 NC_011205.1 identified by match to protein family HMM PF07007; hypothetical protein 1186038 439851001308 SeD_A1197 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215053.1 1185643 R 439851 CDS YP_002215054.1 198244226 complement(1186097..1190059) 1 NC_011205.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 1190059 putA 439851001309 putA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_002215054.1 1186097 R 439851 CDS YP_008169824.1 528879893 1190120..1190251 1 NC_011205.1 hypothetical protein 1190251 439851001310 SeD_A1199 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_008169824.1 1190120 D 439851 CDS YP_002215055.1 198243177 1190480..1191988 1 NC_011205.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121; sodium/proline symporter 1191988 putP 439851001311 putP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sodium/proline symporter YP_002215055.1 1190480 D 439851 CDS YP_002215056.1 198242183 complement(1193775..1194656) 1 NC_011205.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family transcriptional regulator 1194656 439851001313 SeD_A1202 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RpiR family transcriptional regulator YP_002215056.1 1193775 R 439851 CDS YP_002215057.1 198242842 complement(1194942..1196438) 1 NC_011205.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium-glucose/galactose cotransporter 1196438 439851001314 SeD_A1203 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sodium-glucose/galactose cotransporter YP_002215057.1 1194942 R 439851 CDS YP_002215058.1 198245803 complement(1196775..1197455) 1 NC_011205.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 1197455 439851001315 SeD_A1204 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N-acetylmannosamine-6-phosphate 2-epimerase YP_002215058.1 1196775 R 439851 CDS YP_002215059.1 198241833 1197961..1199115 1 NC_011205.1 identified by match to protein family HMM PF01344; match to protein family HMM PF07646; N-acetylneuraminic acid mutarotase 1199115 439851001316 SeD_A1205 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N-acetylneuraminic acid mutarotase YP_002215059.1 1197961 D 439851 CDS YP_002215060.1 198243491 1199160..1199852 1 NC_011205.1 identified by match to protein family HMM PF06178; oligogalacturonate-specific porin 1199852 439851001317 SeD_A1206 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oligogalacturonate-specific porin YP_002215060.1 1199160 D 439851 CDS YP_002215061.1 198245130 1201430..1202533 1 NC_011205.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase YjhC 1202533 439851001320 SeD_A1209 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxidoreductase YjhC YP_002215061.1 1201430 D 439851 CDS YP_002215062.1 198242554 complement(1202700..1202978) 1 NC_011205.1 identified by match to protein family HMM PF03795; GTP cyclohydrolase II 1202978 439851001321 SeD_A1210 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GTP cyclohydrolase II YP_002215062.1 1202700 R 439851 CDS YP_002215063.1 198244180 1203072..1203242 1 NC_011205.1 hypothetical protein 1203242 439851001322 SeD_A1211 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215063.1 1203072 D 439851 CDS YP_002215064.1 198245479 1203281..1203406 1 NC_011205.1 identified by glimmer; hypothetical protein 1203406 439851001323 SeD_A1212 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215064.1 1203281 D 439851 CDS YP_002215065.1 198242349 complement(1204294..1204428) 1 NC_011205.1 identified by glimmer; hypothetical protein 1204428 439851001324 SeD_A1213 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215065.1 1204294 R 439851 CDS YP_002215066.1 198241857 complement(1204425..1204796) 1 NC_011205.1 identified by glimmer; hypothetical protein 1204796 439851001325 SeD_A1214 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215066.1 1204425 R 439851 CDS YP_002215067.1 198245586 complement(1205265..1206137) 1 NC_011205.1 identified by match to protein family HMM PF01476; peptidoglycan-binding LysM 1206137 439851001326 SeD_A1215 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidoglycan-binding LysM YP_002215067.1 1205265 R 439851 CDS YP_002215068.1 198242614 complement(1206170..1206649) 1 NC_011205.1 identified by match to protein family HMM PF05638; HNH endonuclease domain-containing protein 1206649 439851001327 SeD_A1216 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 HNH endonuclease domain-containing protein YP_002215068.1 1206170 R 439851 CDS YP_002215069.1 198246064 complement(1206665..1208029) 1 NC_011205.1 identified by match to protein family HMM PF06812; ImpA domain-containing protein 1208029 439851001328 SeD_A1217 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ImpA domain-containing protein YP_002215069.1 1206665 R 439851 CDS YP_002215070.1 198244477 complement(1208040..1211501) 1 NC_011205.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761; hypothetical protein 1211501 439851001329 SeD_A1218 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215070.1 1208040 R 439851 CDS YP_002215071.1 198244825 complement(1211580..1212992) 1 NC_011205.1 identified by match to protein family HMM PF06812; ImpA domain-containing protein 1212992 439851001330 SeD_A1219 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ImpA domain-containing protein YP_002215071.1 1211580 R 439851 CDS YP_002215072.1 198243272 complement(1212994..1213731) 1 NC_011205.1 type VI secretion-associated protein 1213731 439851001331 SeD_A1220 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type VI secretion-associated protein YP_002215072.1 1212994 R 439851 CDS YP_002215073.1 198243050 complement(1213728..1216463) 1 NC_011205.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728; chaperone protein clpB 1216463 clpB 439851001332 clpB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chaperone protein clpB YP_002215073.1 1213728 R 439851 CDS YP_002215074.1 198243709 complement(1216476..1217234) 1 NC_011205.1 hypothetical protein 1217234 439851001333 SeD_A1222 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215074.1 1216476 R 439851 CDS YP_002215075.1 198241763 complement(1217239..1218570) 1 NC_011205.1 identified by match to protein family HMM PF05936; hypothetical protein 1218570 439851001334 SeD_A1223 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215075.1 1217239 R 439851 CDS YP_002215076.1 198242383 complement(1218573..1219106) 1 NC_011205.1 type VI secretion lipoprotein family protein 1219106 439851001335 SeD_A1224 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type VI secretion lipoprotein family protein YP_002215076.1 1218573 R 439851 CDS YP_002215077.1 198243153 complement(1219103..1220389) 1 NC_011205.1 hypothetical protein 1220389 439851001336 SeD_A1225 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215077.1 1219103 R 439851 CDS YP_002215078.1 198243822 complement(1220414..1221502) 1 NC_011205.1 identified by match to protein family HMM PF06996; hypothetical protein 1221502 439851001337 SeD_A1226 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215078.1 1220414 R 439851 CDS YP_002215079.1 198243146 complement(1221466..1223319) 1 NC_011205.1 identified by match to protein family HMM PF05947; hypothetical protein 1223319 439851001338 SeD_A1227 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215079.1 1221466 R 439851 CDS YP_002215080.1 198243684 complement(1223324..1223740) 1 NC_011205.1 identified by match to protein family HMM PF04965; hypothetical protein 1223740 439851001339 SeD_A1228 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215080.1 1223324 R 439851 CDS YP_002215081.1 198241800 complement(1223737..1225209) 1 NC_011205.1 identified by match to protein family HMM PF05943; hypothetical protein 1225209 439851001340 SeD_A1229 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215081.1 1223737 R 439851 CDS YP_002215082.1 198242376 complement(1225258..1225470) 1 NC_011205.1 hypothetical protein 1225470 439851001341 SeD_A1230 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215082.1 1225258 R 439851 CDS YP_002215083.1 198245588 complement(1225500..1226003) 1 NC_011205.1 identified by match to protein family HMM PF05591; type VI secretion protein 1226003 439851001342 SeD_A1231 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type VI secretion protein YP_002215083.1 1225500 R 439851 CDS YP_002215084.1 198246198 1226060..1226239 1 NC_011205.1 identified by glimmer; hypothetical protein 1226239 439851001343 SeD_A1232 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215084.1 1226060 D 439851 CDS YP_002215085.1 198242802 1226633..1227151 1 NC_011205.1 identified by match to protein family HMM PF05638; hypothetical protein 1227151 439851001344 SeD_A1233 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215085.1 1226633 D 439851 CDS YP_002215086.1 198242271 1227373..1229487 1 NC_011205.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646; Vgr family type VI secretion system 1229487 439851001345 SeD_A1234 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Vgr family type VI secretion system YP_002215086.1 1227373 D 439851 CDS YP_002215087.1 198245895 1229589..1233806 1 NC_011205.1 identified by match to protein family HMM PF03527; match to protein family HMM PF05593; match to protein family HMM TIGR01643; hypothetical protein 1233806 439851001346 SeD_A1235 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215087.1 1229589 D 439851 CDS YP_002215088.1 198245577 1234753..1234896 1 NC_011205.1 identified by glimmer; hypothetical protein 1234896 439851001347 SeD_A1236 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215088.1 1234753 D 439851 CDS YP_002215089.1 198242314 1236122..1236421 1 NC_011205.1 identified by match to protein family HMM PF01527; IS3 OrfA 1236421 439851001349 SeD_A1238 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 IS3 OrfA YP_002215089.1 1236122 D 439851 CDS YP_002215090.1 198242322 complement(1237409..1238188) 1 NC_011205.1 hypothetical protein 1238188 439851001352 SeD_A1241 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215090.1 1237409 R 439851 CDS YP_008169825.1 528879894 1238791..1239108 1 NC_011205.1 hypothetical protein 1239108 439851001354 SeD_A1243 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_008169825.1 1238791 D 439851 CDS YP_008169826.1 528879895 1239648..1239860 1 NC_011205.1 cold-shock protein 1239860 439851001355 SeD_A1244 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cold-shock protein YP_008169826.1 1239648 D 439851 CDS YP_002215091.1 198242830 complement(1240318..1240716) 1 NC_011205.1 identified by match to protein family HMM PF00267; outer membrane protein N 1240716 439851001356 SeD_A1245 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein N YP_002215091.1 1240318 R 439851 CDS YP_002215092.1 198244174 1242212..1242490 1 NC_011205.1 outer membrane protein N 1242490 439851001358 SeD_A1247 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein N YP_002215092.1 1242212 D 439851 CDS YP_002215093.1 198242244 1242570..1243265 1 NC_011205.1 identified by match to protein family HMM PF01966; hypothetical protein 1243265 439851001359 SeD_A1248 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215093.1 1242570 D 439851 CDS YP_002215094.1 198242597 1243339..1244769 1 NC_011205.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA cytosine methylase 1244769 439851001360 SeD_A1249 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA cytosine methylase YP_002215094.1 1243339 D 439851 CDS YP_002215095.1 198246174 1244750..1245220 1 NC_011205.1 identified by match to protein family HMM PF03852; match to protein family HMM TIGR00632; very short patch repair protein 1245220 439851001361 SeD_A1250 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 very short patch repair protein YP_002215095.1 1244750 D 439851 CDS YP_002215096.1 198245152 complement(1245209..1246129) 1 NC_011205.1 identified by match to protein family HMM PF00892; hypothetical protein 1246129 439851001362 SeD_A1251 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215096.1 1245209 R 439851 CDS YP_002215097.1 198244190 1246305..1247216 1 NC_011205.1 identified by match to protein family HMM PF05661; hypothetical protein 1247216 439851001363 SeD_A1252 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215097.1 1246305 D 439851 CDS YP_002215098.1 198245164 1247643..1249355 1 NC_011205.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; cellulose synthesis regulatory protein 1249355 439851001364 SeD_A1253 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cellulose synthesis regulatory protein YP_002215098.1 1247643 D 439851 CDS YP_002215099.1 198244610 complement(1249334..1250170) 1 NC_011205.1 catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 1250170 439851001365 SeD_A1254 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 mannosyl-3-phosphoglycerate phosphatase YP_002215099.1 1249334 R 439851 CDS YP_002215100.1 198245952 1250284..1250406 1 NC_011205.1 identified by glimmer; hypothetical protein 1250406 439851001366 SeD_A1255 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215100.1 1250284 D 439851 CDS YP_002215101.1 198244216 complement(1250480..1250707) 1 NC_011205.1 hypothetical protein 1250707 439851001368 SeD_A1257 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215101.1 1250480 R 439851 CDS YP_002215102.1 198242701 1250833..1251030 1 NC_011205.1 hypothetical protein 1251030 439851001369 SeD_A1258 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215102.1 1250833 D 439851 CDS YP_002215103.1 198245306 complement(1251069..1251692) 1 NC_011205.1 identified by match to protein family HMM PF00196; colanic acid capsular biosynthesis activation protein A 1251692 rcsA 439851001370 rcsA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 colanic acid capsular biosynthesis activation protein A YP_002215103.1 1251069 R 439851 CDS YP_002215104.1 198245903 complement(1251650..1251763) 1 NC_011205.1 identified by glimmer; hypothetical protein 1251763 439851001371 SeD_A1260 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215104.1 1251650 R 439851 CDS YP_002215105.1 198244152 complement(1251974..1252768) 1 NC_011205.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1252768 fliR 439851001372 fliR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar biosynthesis protein FliR YP_002215105.1 1251974 R 439851 CDS YP_002215106.1 198244495 complement(1252777..1253046) 1 NC_011205.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 1253046 fliQ 439851001373 fliQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar biosynthesis protein FliQ YP_002215106.1 1252777 R 439851 CDS YP_002215107.1 198244709 complement(1253056..1253793) 1 NC_011205.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1253793 fliP 439851001374 fliP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar biosynthesis protein FliP YP_002215107.1 1253056 R 439851 CDS YP_002215108.1 198243273 complement(1253793..1254170) 1 NC_011205.1 with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus; flagellar biosynthesis protein FliO 1254170 439851001375 SeD_A1264 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar biosynthesis protein FliO YP_002215108.1 1253793 R 439851 CDS YP_002215109.1 198242746 complement(1254170..1254583) 1 NC_011205.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliN 1254583 fliN 439851001376 fliN Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar motor switch protein FliN YP_002215109.1 1254170 R 439851 CDS YP_002215110.1 198245200 complement(1254580..1255584) 1 NC_011205.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1255584 fliM 439851001377 fliM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar motor switch protein FliM YP_002215110.1 1254580 R 439851 CDS YP_002215111.1 198243515 complement(1255589..1256056) 1 NC_011205.1 interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1256056 fliL 439851001378 fliL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar basal body-associated protein FliL YP_002215111.1 1255589 R 439851 CDS YP_002215112.1 198243610 complement(1256161..1257378) 1 NC_011205.1 identified by match to protein family HMM PF02120; flagellar hook-length control protein 1257378 439851001379 SeD_A1268 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar hook-length control protein YP_002215112.1 1256161 R 439851 CDS YP_002215113.1 198244367 complement(1257375..1257818) 1 NC_011205.1 rod/hook and filament chaperone; flagellar biosynthesis chaperone 1257818 fliJ 439851001380 fliJ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar biosynthesis chaperone YP_002215113.1 1257375 R 439851 CDS YP_002215114.1 198245111 complement(1257840..1259210) 1 NC_011205.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1259210 fliI 439851001381 fliI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellum-specific ATP synthase YP_002215114.1 1257840 R 439851 CDS YP_002215115.1 198245604 complement(1259210..1259917) 1 NC_011205.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1259917 fliH 439851001382 fliH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar assembly protein H YP_002215115.1 1259210 R 439851 CDS YP_002215116.1 198245241 complement(1259910..1260905) 1 NC_011205.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1260905 fliG 439851001383 fliG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar motor switch protein G YP_002215116.1 1259910 R 439851 CDS YP_002215117.1 198243509 complement(1260898..1262628) 1 NC_011205.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1262628 fliF 439851001384 fliF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar MS-ring protein YP_002215117.1 1260898 R 439851 CDS YP_002215118.1 198241775 1262613..1262741 1 NC_011205.1 hypothetical protein 1262741 439851001385 SeD_A1274 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215118.1 1262613 D 439851 CDS YP_002215119.1 198243733 1262788..1263102 1 NC_011205.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 1263102 fliE 439851001386 fliE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar hook-basal body protein FliE YP_002215119.1 1262788 D 439851 CDS YP_002215120.1 198241750 complement(1263222..1263608) 1 NC_011205.1 50S ribosomal protein 1263608 439851001387 SeD_A1276 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein YP_002215120.1 1263222 R 439851 CDS YP_002215121.1 198244923 complement(1263873..1264106) 1 NC_011205.1 identified by match to protein family HMM PF01206; hypothetical protein 1264106 439851001388 SeD_A1277 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215121.1 1263873 R 439851 CDS YP_002215122.1 198242438 complement(1264103..1265308) 1 NC_011205.1 identified by match to protein family HMM PF04143; inner membrane protein 1265308 439851001389 SeD_A1278 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002215122.1 1264103 R 439851 CDS YP_002215123.1 198243087 1265494..1265907 1 NC_011205.1 hypothetical protein 1265907 439851001390 SeD_A1279 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215123.1 1265494 D 439851 CDS YP_002215124.1 198243719 complement(1265947..1267431) 1 NC_011205.1 converts 1,4-alpha-D-glucans to maltodextrin; cytoplasmic alpha-amylase 1267431 439851001391 SeD_A1280 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytoplasmic alpha-amylase YP_002215124.1 1265947 R 439851 CDS YP_002215125.1 198244556 complement(1267503..1267871) 1 NC_011205.1 binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family; flagellar biosynthesis protein FliT 1267871 439851001392 SeD_A1281 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar biosynthesis protein FliT YP_002215125.1 1267503 R 439851 CDS YP_002215126.1 198244060 complement(1267871..1268278) 1 NC_011205.1 flagellin specific chaperone; flagellar protein FliS 1268278 fliS 439851001393 fliS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar protein FliS YP_002215126.1 1267871 R 439851 CDS YP_002215127.1 198245533 complement(1268293..1269699) 1 NC_011205.1 involved in flagellin assembly; flagellar capping protein 1269699 fliD 439851001394 fliD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar capping protein YP_002215127.1 1268293 R 439851 CDS YP_002215128.1 198246045 1269698..1269937 1 NC_011205.1 hypothetical protein 1269937 439851001395 SeD_A1283 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215128.1 1269698 D 439851 CDS YP_002215129.1 198242796 1269955..1271472 1 NC_011205.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700; phase-1 flagellin 1271472 439851001396 SeD_A1285 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phase-1 flagellin YP_002215129.1 1269955 D 439851 CDS YP_002215130.1 198242088 1271551..1272756 1 NC_011205.1 lysine-N-methylase 1272756 439851001397 SeD_A1286 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lysine-N-methylase YP_002215130.1 1271551 D 439851 CDS YP_002215131.1 198242943 1272983..1273672 1 NC_011205.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1273672 fliA 439851001398 fliA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar biosynthesis sigma factor YP_002215131.1 1272983 D 439851 CDS YP_002215132.1 198244762 1274429..1275229 1 NC_011205.1 identified by match to protein family HMM PF00497; cystine transporter subunit 1275229 fliY 439851001400 fliY Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cystine transporter subunit YP_002215132.1 1274429 D 439851 CDS YP_002215133.1 198244281 1275383..1276369 1 NC_011205.1 catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 1276369 439851001401 SeD_A1290 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-cysteine desulfhydrase YP_002215133.1 1275383 D 439851 CDS YP_002215134.1 198242194 1276390..1277058 1 NC_011205.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine family amino acid ABC transporter permease 1277058 439851001402 SeD_A1291 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 His/Glu/Gln/Arg/opine family amino acid ABC transporter permease YP_002215134.1 1276390 D 439851 CDS YP_002215135.1 198246194 1277055..1277807 1 NC_011205.1 identified by match to protein family HMM PF00005; amino-acid ABC transporter ATP-binding protein YecC 1277807 439851001403 SeD_A1292 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 amino-acid ABC transporter ATP-binding protein YecC YP_002215135.1 1277055 D 439851 CDS YP_002215136.1 198243442 1278040..1278762 1 NC_011205.1 regulates genes involved in cell division; DNA-binding transcriptional activator SdiA 1278762 439851001404 SeD_A1293 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional activator SdiA YP_002215136.1 1278040 D 439851 CDS YP_002215137.1 198242378 complement(1278829..1279053) 1 NC_011205.1 hypothetical protein 1279053 439851001405 SeD_A1294 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215137.1 1278829 R 439851 CDS YP_002215138.1 198243667 complement(1279050..1279205) 1 NC_011205.1 inner membrane protein 1279205 439851001406 SeD_A1295 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002215138.1 1279050 R 439851 CDS YP_002215139.1 198242641 1279517..1280173 1 NC_011205.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 1280173 uvrY 439851001407 uvrY Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 response regulator YP_002215139.1 1279517 D 439851 CDS YP_002215140.1 198244405 1280170..1282002 1 NC_011205.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1282002 uvrC 439851001408 uvrC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 excinuclease ABC subunit C YP_002215140.1 1280170 D 439851 CDS YP_002215141.1 198243787 1282059..1282607 1 NC_011205.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; phosphatidylglycerophosphate synthetase 1282607 pgsA 439851001409 pgsA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphatidylglycerophosphate synthetase YP_002215141.1 1282059 D 439851 CDS YP_002215142.1 198245810 1283859..1285292 1 NC_011205.1 identified by match to protein family HMM PF00877; cell wall-associated hydrolase 1285292 439851001415 SeD_A1304 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell wall-associated hydrolase YP_002215142.1 1283859 D 439851 CDS YP_002215143.1 198241898 1285505..1285831 1 NC_011205.1 glucose-6-phosphate dehydrogenase 1285831 439851001416 SeD_A1305 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucose-6-phosphate dehydrogenase YP_002215143.1 1285505 D 439851 CDS YP_002215144.1 198242584 1286070..1286735 1 NC_011205.1 identified by match to protein family HMM PF02810; match to protein family HMM TIGR02292; hypothetical protein 1286735 439851001417 SeD_A1306 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215144.1 1286070 D 439851 CDS YP_002215145.1 198242654 complement(1286810..1288078) 1 NC_011205.1 identified by match to protein family HMM PF01490; match to protein family HMM PF03222; match to protein family HMM TIGR00837; tyrosine-specific transport protein 1288078 439851001418 SeD_A1307 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tyrosine-specific transport protein YP_002215145.1 1286810 R 439851 CDS YP_002215146.1 198244843 1288248..1288487 1 NC_011205.1 hypothetical protein 1288487 439851001419 SeD_A1308 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215146.1 1288248 D 439851 CDS YP_002215147.1 198244207 complement(1288533..1289030) 1 NC_011205.1 cytoplasmic iron storage protein; ferritin 1289030 ftnA 439851001420 ftnA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ferritin YP_002215147.1 1288533 R 439851 CDS YP_002215148.1 198243186 complement(1289129..1289245) 1 NC_011205.1 identified by glimmer; hypothetical protein 1289245 439851001421 SeD_A1310 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215148.1 1289129 R 439851 CDS YP_002215149.1 198244594 complement(1289270..1289605) 1 NC_011205.1 outer membrane lipoprotein 1289605 439851001422 SeD_A1311 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane lipoprotein YP_002215149.1 1289270 R 439851 CDS YP_002215150.1 198243351 1289861..1290499 1 NC_011205.1 identified by match to protein family HMM PF02502; hypothetical protein 1290499 439851001423 SeD_A1312 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215150.1 1289861 D 439851 CDS YP_002215151.1 198243995 complement(1290678..1291181) 1 NC_011205.1 identified by match to protein family HMM PF00210; ferritin 1291181 439851001424 SeD_A1313 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ferritin YP_002215151.1 1290678 R 439851 CDS YP_002215152.1 198242079 1291732..1292289 1 NC_011205.1 identified by match to protein family HMM PF01965; ThiJ/PfpI domain-containing protein 1292289 439851001425 SeD_A1314 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ThiJ/PfpI domain-containing protein YP_002215152.1 1291732 D 439851 CDS YP_002215153.1 198245852 1292922..1293725 1 NC_011205.1 biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature; trehalose-6-phosphate phosphatase 1293725 otsB 439851001426 otsB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 trehalose-6-phosphate phosphatase YP_002215153.1 1292922 D 439851 CDS YP_002215154.1 198246060 1293700..1295121 1 NC_011205.1 identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400; trehalose-6-phosphate synthase 1295121 otsA 439851001427 otsA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 trehalose-6-phosphate synthase YP_002215154.1 1293700 D 439851 CDS YP_002215155.1 198244318 complement(1295139..1295567) 1 NC_011205.1 ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspC 1295567 439851001428 SeD_A1317 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 universal stress protein UspC YP_002215155.1 1295139 R 439851 CDS YP_002215156.1 198245060 1295998..1296141 1 NC_011205.1 identified by glimmer; hypothetical protein 1296141 439851001429 SeD_A1318 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215156.1 1295998 D 439851 CDS YP_002215157.1 198243000 1296354..1296704 1 NC_011205.1 with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD 1296704 439851001430 SeD_A1319 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional activator FlhD YP_002215157.1 1296354 D 439851 CDS YP_002215158.1 198243477 1296707..1297285 1 NC_011205.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 1297285 flhC 439851001431 flhC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional activator FlhC YP_002215158.1 1296707 D 439851 CDS YP_002215159.1 198243470 1297410..1298297 1 NC_011205.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 1298297 motA 439851001432 motA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar motor protein MotA YP_002215159.1 1297410 D 439851 CDS YP_002215160.1 198243979 1298294..1299223 1 NC_011205.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 1299223 motB 439851001433 motB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar motor protein MotB YP_002215160.1 1298294 D 439851 CDS YP_002215161.1 198243368 1299234..1301243 1 NC_011205.1 chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component; chemotaxis protein CheA 1301243 439851001434 SeD_A1323 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chemotaxis protein CheA YP_002215161.1 1299234 D 439851 CDS YP_002215162.1 198244984 1301264..1301767 1 NC_011205.1 identified by match to protein family HMM PF01584; purine-binding chemotaxis protein 1301767 439851001435 SeD_A1324 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 purine-binding chemotaxis protein YP_002215162.1 1301264 D 439851 CDS YP_002215163.1 198244200 complement(1301811..1301924) 1 NC_011205.1 identified by glimmer; hypothetical protein 1301924 439851001436 SeD_A1325 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215163.1 1301811 R 439851 CDS YP_002215164.1 198246002 1302004..1303665 1 NC_011205.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein II 1303665 439851001437 SeD_A1326 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methyl-accepting chemotaxis protein II YP_002215164.1 1302004 D 439851 CDS YP_002215165.1 198245186 1303826..1304692 1 NC_011205.1 methylates the MCP; chemotaxis methyltransferase CheR 1304692 cheR 439851001438 cheR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chemotaxis methyltransferase CheR YP_002215165.1 1303826 D 439851 CDS YP_002215166.1 198242380 1304689..1305738 1 NC_011205.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1305738 cheB 439851001439 cheB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chemotaxis-specific methylesterase YP_002215166.1 1304689 D 439851 CDS YP_002215167.1 198242782 1305756..1306145 1 NC_011205.1 chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; chemotaxis regulatory protein CheY 1306145 cheY 439851001440 cheY Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chemotaxis regulatory protein CheY YP_002215167.1 1305756 D 439851 CDS YP_002215168.1 198242295 1306156..1306800 1 NC_011205.1 cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ 1306800 439851001441 SeD_A1330 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chemotaxis regulator CheZ YP_002215168.1 1306156 D 439851 CDS YP_002215169.1 198245714 1306994..1308145 1 NC_011205.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1308145 flhB 439851001442 flhB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar biosynthesis protein FlhB YP_002215169.1 1306994 D 439851 CDS YP_002215170.1 198245245 1308138..1310216 1 NC_011205.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1310216 flhA 439851001443 flhA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar biosynthesis protein FlhA YP_002215170.1 1308138 D 439851 CDS YP_002215171.1 198244044 1310216..1310608 1 NC_011205.1 identified by match to protein family HMM PF06366; flagellar protein FlhE 1310608 439851001444 SeD_A1333 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar protein FlhE YP_002215171.1 1310216 D 439851 CDS YP_002215172.1 198244665 complement(1310605..1310742) 1 NC_011205.1 identified by glimmer; hypothetical protein 1310742 439851001445 SeD_A1334 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215172.1 1310605 R 439851 CDS YP_002215173.1 198242441 1310844..1311983 1 NC_011205.1 identified by match to protein family HMM PF07470; glycosyl hydrolase, family 88 1311983 439851001446 SeD_A1335 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycosyl hydrolase, family 88 YP_002215173.1 1310844 D 439851 CDS YP_002215174.1 198241795 complement(1312037..1313908) 1 NC_011205.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 2 1313908 439851001447 SeD_A1336 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 penicillin-binding protein 2 YP_002215174.1 1312037 R 439851 CDS YP_002215175.1 198246204 complement(1314097..1315830) 1 NC_011205.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1315830 argS 439851001448 argS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arginyl-tRNA synthetase YP_002215175.1 1314097 R 439851 CDS YP_002215176.1 198245552 complement(1315846..1315962) 1 NC_011205.1 identified by glimmer; hypothetical protein 1315962 439851001449 SeD_A1338 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215176.1 1315846 R 439851 CDS YP_002215177.1 198244960 1316067..1316636 1 NC_011205.1 identified by match to protein family HMM PF06185; hypothetical protein 1316636 439851001450 SeD_A1339 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215177.1 1316067 D 439851 CDS YP_002215178.1 198244316 1316656..1317402 1 NC_011205.1 identified by match to protein family HMM PF03932; copper homeostasis protein CutC 1317402 439851001451 SeD_A1340 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 copper homeostasis protein CutC YP_002215178.1 1316656 D 439851 CDS YP_002215179.1 198244340 complement(1317638..1318609) 1 NC_011205.1 identified by match to protein family HMM PF08003; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR00452; methyltransferase 1318609 439851001452 SeD_A1341 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methyltransferase YP_002215179.1 1317638 R 439851 CDS YP_002215180.1 198244871 complement(1318606..1319349) 1 NC_011205.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR00740; methyltransferase 1319349 439851001453 SeD_A1342 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methyltransferase YP_002215180.1 1318606 R 439851 CDS YP_002215181.1 198242143 complement(1319390..1319785) 1 NC_011205.1 inner membrane protein 1319785 439851001454 SeD_A1343 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002215181.1 1319390 R 439851 CDS YP_002215182.1 198242656 complement(1319838..1320656) 1 NC_011205.1 identified by match to protein family HMM PF01904; hypothetical protein 1320656 439851001455 SeD_A1344 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215182.1 1319838 R 439851 CDS YP_002215183.1 198243427 complement(1320653..1321219) 1 NC_011205.1 identified by match to protein family HMM PF00857; hypothetical protein 1321219 439851001456 SeD_A1345 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215183.1 1320653 R 439851 CDS YP_002215184.1 198243936 1321544..1323316 1 NC_011205.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1323316 aspS 439851001457 aspS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aspartyl-tRNA synthetase YP_002215184.1 1321544 D 439851 CDS YP_002215185.1 198244134 1323419..1323871 1 NC_011205.1 converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase 1323871 ntpA 439851001458 ntpA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dATP pyrophosphohydrolase YP_002215185.1 1323419 D 439851 CDS YP_002215186.1 198244624 1323901..1324641 1 NC_011205.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 1324641 439851001459 SeD_A1348 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215186.1 1323901 D 439851 CDS YP_002215187.1 198245392 1324678..1325199 1 NC_011205.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1325199 ruvC 439851001460 ruvC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Holliday junction resolvase YP_002215187.1 1324678 D 439851 CDS YP_002215188.1 198244417 1325230..1326726 1 NC_011205.1 periplasmic phosphate-binding protein 1326726 439851001461 SeD_A1350 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 periplasmic phosphate-binding protein YP_002215188.1 1325230 D 439851 CDS YP_002215189.1 198243559 complement(1326826..1327422) 1 NC_011205.1 identified by match to protein family HMM PF06520; hypothetical protein 1327422 439851001462 SeD_A1351 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215189.1 1326826 R 439851 CDS YP_002215190.1 198242955 1327631..1328323 1 NC_011205.1 hypothetical protein 1328323 439851001463 SeD_A1352 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215190.1 1327631 D 439851 CDS YP_002215191.1 198242475 1328683..1329294 1 NC_011205.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1329294 ruvA 439851001464 ruvA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Holliday junction DNA helicase RuvA YP_002215191.1 1328683 D 439851 CDS YP_002215192.1 198242097 1329303..1330313 1 NC_011205.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1330313 ruvB 439851001465 ruvB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Holliday junction DNA helicase RuvB YP_002215192.1 1329303 D 439851 CDS YP_002215193.1 198245595 complement(1330392..1331177) 1 NC_011205.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter membrane component 1331177 znuB 439851001466 znuB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 high-affinity zinc transporter membrane component YP_002215193.1 1330392 R 439851 CDS YP_002215194.1 198245100 complement(1331174..1331980) 1 NC_011205.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter ATPase 1331980 znuC 439851001467 znuC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 high-affinity zinc transporter ATPase YP_002215194.1 1331174 R 439851 CDS YP_002215195.1 198243467 1332008..1332952 1 NC_011205.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic component 1332952 znuA 439851001468 znuA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 high-affinity zinc transporter periplasmic component YP_002215195.1 1332008 D 439851 CDS YP_002215196.1 198242970 1332968..1334287 1 NC_011205.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551; match to protein family HMM PF04225; match to protein family HMM PF08525; hypothetical protein 1334287 439851001469 SeD_A1358 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215196.1 1332968 D 439851 CDS YP_002215197.1 198243024 1334404..1335375 1 NC_011205.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 1335375 msbB 439851001470 msbB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_002215197.1 1334404 D 439851 CDS YP_002215198.1 198242514 complement(1335448..1336890) 1 NC_011205.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1336890 pykA 439851001471 pykA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pyruvate kinase YP_002215198.1 1335448 R 439851 CDS YP_002215199.1 198244289 complement(1337014..1337883) 1 NC_011205.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 1337883 439851001472 SeD_A1361 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator HexR YP_002215199.1 1337014 R 439851 CDS YP_002215200.1 198246022 1338225..1339700 1 NC_011205.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1339700 zwf 439851001473 zwf Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucose-6-phosphate 1-dehydrogenase YP_002215200.1 1338225 D 439851 CDS YP_002215201.1 198242599 complement(1339814..1339969) 1 NC_011205.1 identified by glimmer; hypothetical protein 1339969 439851001474 SeD_A1364 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215201.1 1339814 R 439851 CDS YP_002215202.1 198242092 1339935..1341746 1 NC_011205.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1341746 edd 439851001475 edd Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphogluconate dehydratase YP_002215202.1 1339935 D 439851 CDS YP_002215203.1 198243890 1341784..1342425 1 NC_011205.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1342425 eda 439851001476 eda Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_002215203.1 1341784 D 439851 CDS YP_002215204.1 198243510 complement(1342525..1343703) 1 NC_011205.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1343703 purT 439851001477 purT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoribosylglycinamide formyltransferase 2 YP_002215204.1 1342525 R 439851 CDS YP_002215205.1 198244625 1343834..1344124 1 NC_011205.1 identified by match to protein family HMM PF07130; DNA damage-inducible protein YebG 1344124 439851001478 SeD_A1367 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA damage-inducible protein YebG YP_002215205.1 1343834 D 439851 CDS YP_002215206.1 198244197 1344192..1344545 1 NC_011205.1 secreted protein; unknown function; hypothetical protein 1344545 439851001479 SeD_A1368 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215206.1 1344192 D 439851 CDS YP_002215207.1 198245975 1344639..1345298 1 NC_011205.1 identified by match to protein family HMM PF04391; hypothetical protein 1345298 439851001480 SeD_A1369 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215207.1 1344639 D 439851 CDS YP_002215208.1 198245473 1345511..1347562 1 NC_011205.1 PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; protease 2 1347562 439851001481 SeD_A1370 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 protease 2 YP_002215208.1 1345511 D 439851 CDS YP_002215209.1 198244129 complement(1347599..1348297) 1 NC_011205.1 3'-5' exonuclease activity on single or double-strand DNA; exodeoxyribonuclease X 1348297 439851001482 SeD_A1371 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 exodeoxyribonuclease X YP_002215209.1 1347599 R 439851 CDS YP_002215210.1 198244596 complement(1348321..1348977) 1 NC_011205.1 identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 1348977 439851001483 SeD_A1372 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 carbon-nitrogen family hydrolase YP_002215210.1 1348321 R 439851 CDS YP_002215211.1 198243422 complement(1349085..1349315) 1 NC_011205.1 identified by match to protein family HMM PF06440; DNA polymerase III subunit theta 1349315 439851001484 SeD_A1373 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA polymerase III subunit theta YP_002215211.1 1349085 R 439851 CDS YP_002215212.1 198243904 1349453..1349827 1 NC_011205.1 identified by match to protein family HMM PF04234; hypothetical protein 1349827 439851001485 SeD_A1374 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215212.1 1349453 D 439851 CDS YP_002215213.1 198245313 1349828..1350703 1 NC_011205.1 identified by match to protein family HMM PF05425; copper resistance protein D 1350703 439851001486 SeD_A1375 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 copper resistance protein D YP_002215213.1 1349828 D 439851 CDS YP_002215214.1 198242094 1350720..1351073 1 NC_011205.1 hypothetical protein 1351073 439851001487 SeD_A1376 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215214.1 1350720 D 439851 CDS YP_002215215.1 198244121 complement(1351456..1352535) 1 NC_011205.1 identified by match to protein family HMM PF00589; match to protein family HMM PF09003; phage integrase 1352535 439851001490 SeD_A1379 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage integrase YP_002215215.1 1351456 R 439851 CDS YP_002215216.1 198244577 complement(1352849..1353085) 1 NC_011205.1 identified by glimmer; hypothetical protein 1353085 439851001491 SeD_A1380 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215216.1 1352849 R 439851 CDS YP_002215217.1 198243964 complement(1353376..1353561) 1 NC_011205.1 Rac prophage; hypothetical protein 1353561 439851001492 SeD_A1381 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215217.1 1353376 R 439851 CDS YP_002215218.1 198244457 complement(1353608..1354438) 1 NC_011205.1 identified by match to protein family HMM PF03837; match to protein family HMM TIGR00616; recombination and repair protein RecT 1354438 recT 439851001493 recT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 recombination and repair protein RecT YP_002215218.1 1353608 R 439851 CDS YP_002215219.1 198242345 complement(1354431..1357121) 1 NC_011205.1 The RecE (also known as exonuclease VIII) pathway is an alternative pathway for the initiation of homologous recombination in Escherichia coli. The RecE pathway is activated in recB, recC sbcA (suppressors of recB and recC) mutants. Activation of the RecE pathway results in the production of at least two phage proteins relevant for recombinational repair. RecE is a duplex DNA-specific exonuclease which produces 3' overhangs in duplex DNA by preferentially degrading the 5'-ending strands. Recombinational repair of E.coli chromosomal DNA involves as well other proteins: RecA, RecF, RecJ, RecO, RecR, and RuvC.; exonuclease VIII 1357121 439851001494 SeD_A1383 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 exonuclease VIII YP_002215219.1 1354431 R 439851 CDS YP_002215220.1 198241861 complement(1357262..1357597) 1 NC_011205.1 hypothetical protein 1357597 439851001495 SeD_A1384 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215220.1 1357262 R 439851 CDS YP_002215221.1 198242781 complement(1357673..1357879) 1 NC_011205.1 prophage Kil protein 1357879 439851001496 SeD_A1385 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 prophage Kil protein YP_002215221.1 1357673 R 439851 CDS YP_002215222.1 198241757 complement(1357883..1358158) 1 NC_011205.1 identified by glimmer; hypothetical protein 1358158 439851001497 SeD_A1386 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215222.1 1357883 R 439851 CDS YP_002215223.1 198246040 complement(1359176..1359373) 1 NC_011205.1 regulator 1359373 439851001498 SeD_A1387 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 regulator YP_002215223.1 1359176 R 439851 CDS YP_002215224.1 198245598 1359914..1360408 1 NC_011205.1 identified by match to protein family HMM PF06254; hypothetical protein 1360408 439851001499 SeD_A1388 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215224.1 1359914 D 439851 CDS YP_002215225.1 198244936 1360455..1361453 1 NC_011205.1 identified by match to protein family HMM PF07120; hypothetical protein 1361453 439851001500 SeD_A1389 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215225.1 1360455 D 439851 CDS YP_002215226.1 198244323 1361485..1361907 1 NC_011205.1 replication P family protein 1361907 439851001501 SeD_A1390 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 replication P family protein YP_002215226.1 1361485 D 439851 CDS YP_002215227.1 198241964 complement(1362602..1363663) 1 NC_011205.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1363663 439851001502 SeD_A1391 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 diguanylate cyclase YP_002215227.1 1362602 R 439851 CDS YP_002215228.1 198243730 1364141..1366108 1 NC_011205.1 identified by match to protein family HMM PF00753; alkyl/aryl-sulfatase BDS1 1366108 439851001503 SeD_A1392 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 alkyl/aryl-sulfatase BDS1 YP_002215228.1 1364141 D 439851 CDS YP_002215229.1 198246210 complement(1366265..1366390) 1 NC_011205.1 identified by glimmer; hypothetical protein 1366390 439851001504 SeD_A1393 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215229.1 1366265 R 439851 CDS YP_002215230.1 198244464 1366827..1367045 1 NC_011205.1 identified by glimmer; hypothetical protein 1367045 439851001505 SeD_A1394 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215230.1 1366827 D 439851 CDS YP_002215231.1 198241868 1367109..1367708 1 NC_011205.1 identified by match to protein family HMM PF07105; hypothetical protein 1367708 439851001506 SeD_A1395 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215231.1 1367109 D 439851 CDS YP_002215232.1 198242347 1367705..1367932 1 NC_011205.1 gifsy-1 prophage NinG 1367932 439851001507 SeD_A1396 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gifsy-1 prophage NinG YP_002215232.1 1367705 D 439851 CDS YP_002215233.1 198241811 1368062..1368709 1 NC_011205.1 identified by match to protein family HMM PF06323; gifsy-1 prophage RegQ 1368709 439851001508 SeD_A1397 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gifsy-1 prophage RegQ YP_002215233.1 1368062 D 439851 CDS YP_002215234.1 198242415 1368806..1369330 1 NC_011205.1 identified by glimmer; hypothetical protein 1369330 439851001509 SeD_A1398 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215234.1 1368806 D 439851 CDS YP_002215235.1 198243072 1369591..1369707 1 NC_011205.1 identified by glimmer; hypothetical protein 1369707 439851001510 SeD_A1399 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215235.1 1369591 D 439851 CDS YP_002215236.1 198243708 complement(1370514..1370987) 1 NC_011205.1 hypothetical protein 1370987 439851001511 SeD_A1400 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215236.1 1370514 R 439851 CDS YP_002215237.1 198244308 1371470..1371805 1 NC_011205.1 identified by match to protein family HMM PF05106; match to protein family HMM TIGR01594; phage holin, lambda family 1371805 439851001512 SeD_A1401 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage holin, lambda family YP_002215237.1 1371470 D 439851 CDS YP_002215238.1 198245056 1371792..1372241 1 NC_011205.1 identified by match to protein family HMM PF00959; phage lysozyme 1372241 439851001513 SeD_A1402 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage lysozyme YP_002215238.1 1371792 D 439851 CDS YP_002215239.1 198245469 1372238..1372738 1 NC_011205.1 identified by match to protein family HMM PF03245; bacteriophage lysis protein 1372738 439851001514 SeD_A1403 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bacteriophage lysis protein YP_002215239.1 1372238 D 439851 CDS YP_002215240.1 198245983 1372946..1373479 1 NC_011205.1 identified by match to protein family HMM PF07278; gifsy-2 prophage protein 1373479 439851001515 SeD_A1404 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gifsy-2 prophage protein YP_002215240.1 1372946 D 439851 CDS YP_002215241.1 198243287 1373433..1375574 1 NC_011205.1 identified by match to protein family HMM PF05876; phage terminase large subunit 1375574 439851001516 SeD_A1405 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage terminase large subunit YP_002215241.1 1373433 D 439851 CDS YP_002215242.1 198243965 1375571..1375777 1 NC_011205.1 hypothetical protein 1375777 439851001517 SeD_A1406 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215242.1 1375571 D 439851 CDS YP_002215243.1 198242155 1375774..1377321 1 NC_011205.1 identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539; phage portal protein, lambda family 1377321 439851001518 SeD_A1407 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage portal protein, lambda family YP_002215243.1 1375774 D 439851 CDS YP_002215244.1 198242377 1377272..1379326 1 NC_011205.1 identified by match to protein family HMM PF00574; ATP-dependent protease 1379326 439851001519 SeD_A1408 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent protease YP_002215244.1 1377272 D 439851 CDS YP_002215245.1 198245138 1379417..1379740 1 NC_011205.1 RecA/RadA recombinase 1379740 439851001520 SeD_A1409 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RecA/RadA recombinase YP_002215245.1 1379417 D 439851 CDS YP_002215246.1 198245904 1379733..1380032 1 NC_011205.1 hypothetical protein 1380032 439851001521 SeD_A1410 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215246.1 1379733 D 439851 CDS YP_002215247.1 198244211 1380013..1380579 1 NC_011205.1 identified by match to protein family HMM PF06763; prophage minor tail protein Z 1380579 439851001522 SeD_A1411 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 prophage minor tail protein Z YP_002215247.1 1380013 D 439851 CDS YP_002215248.1 198245529 1380576..1380977 1 NC_011205.1 identified by match to protein family HMM PF06141; phage minor tail protein U 1380977 439851001523 SeD_A1412 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage minor tail protein U YP_002215248.1 1380576 D 439851 CDS YP_002215249.1 198242872 1380989..1381738 1 NC_011205.1 identified by match to protein family HMM PF02368; gifsy-2 prophage VmtV 1381738 439851001524 SeD_A1413 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gifsy-2 prophage VmtV YP_002215249.1 1380989 D 439851 CDS YP_002215250.1 198243270 1381784..1382182 1 NC_011205.1 identified by match to protein family HMM PF06894; match to protein family HMM TIGR01674; phage minor tail protein G 1382182 439851001525 SeD_A1414 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage minor tail protein G YP_002215250.1 1381784 D 439851 CDS YP_002215251.1 198243761 1382245..1382508 1 NC_011205.1 identified by match to protein family HMM PF06223; match to protein family HMM TIGR01715; phage tail assembly protein T 1382508 439851001526 SeD_A1415 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage tail assembly protein T YP_002215251.1 1382245 D 439851 CDS YP_002215252.1 198243266 1382489..1385575 1 NC_011205.1 identified by match to protein family HMM PF06791; match to protein family HMM TIGR01541; gifsy-1 prophage VmtH 1385575 439851001527 SeD_A1416 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gifsy-1 prophage VmtH YP_002215252.1 1382489 D 439851 CDS YP_002215253.1 198243816 1385572..1385904 1 NC_011205.1 identified by match to protein family HMM PF05939; phage minor tail protein 1385904 439851001528 SeD_A1417 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage minor tail protein YP_002215253.1 1385572 D 439851 CDS YP_002215254.1 198244814 1386003..1386500 1 NC_011205.1 identified by match to protein family HMM PF06316; attachment/invasion protein 1386500 439851001529 SeD_A1418 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 attachment/invasion protein YP_002215254.1 1386003 D 439851 CDS YP_002215255.1 198245249 complement(1386617..1387150) 1 NC_011205.1 identified by match to protein family HMM PF00080; copper/zinc superoxide dismutase 1387150 sodC 439851001530 sodC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 copper/zinc superoxide dismutase YP_002215255.1 1386617 R 439851 CDS YP_002215256.1 198245742 1387240..1387935 1 NC_011205.1 identified by match to protein family HMM PF05100; match to protein family HMM TIGR01600; phage minor tail protein L 1387935 439851001531 SeD_A1420 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage minor tail protein L YP_002215256.1 1387240 D 439851 CDS YP_002215257.1 198242300 1387945..1388676 1 NC_011205.1 identified by match to protein family HMM PF00877; tail assembly protein 1388676 439851001532 SeD_A1421 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tail assembly protein YP_002215257.1 1387945 D 439851 CDS YP_002215258.1 198242732 1388784..1389284 1 NC_011205.1 identified by match to protein family HMM PF06805; bacteriophage lambda tail assembly protein I 1389284 439851001533 SeD_A1422 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bacteriophage lambda tail assembly protein I YP_002215258.1 1388784 D 439851 CDS YP_002215259.1 198246016 1392747..1392989 1 NC_011205.1 hypothetical protein 1392989 439851001536 SeD_A1426 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215259.1 1392747 D 439851 CDS YP_002215260.1 198245531 1393043..1395460 1 NC_011205.1 identified by match to protein family HMM PF03406; match to protein family HMM PF07484; match to protein family HMM PF08400; side tail fiber protein 1395460 439851001537 SeD_A1427 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 side tail fiber protein YP_002215260.1 1393043 D 439851 CDS YP_002215261.1 198245077 1395460..1396029 1 NC_011205.1 identified by match to protein family HMM PF02413; phage tail assembly protein 1396029 439851001538 SeD_A1428 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage tail assembly protein YP_002215261.1 1395460 D 439851 CDS YP_002215262.1 198244542 complement(1396231..1396953) 1 NC_011205.1 identified by match to protein family HMM PF05364; match to protein family HMM PF07487; guanine nucleotide exchange factor SopE 1396953 439851001539 SeD_A1429 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 guanine nucleotide exchange factor SopE YP_002215262.1 1396231 R 439851 CDS YP_008169827.1 528879896 1397166..1397318 1 NC_011205.1 DNA invertase 1397318 439851001540 SeD_A1430 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA invertase YP_008169827.1 1397166 D 439851 CDS YP_002215263.1 198243615 complement(1397433..1398233) 1 NC_011205.1 hypothetical protein 1398233 439851001541 SeD_A1431 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215263.1 1397433 R 439851 CDS YP_002215264.1 198241749 complement(1399187..1400266) 1 NC_011205.1 identified by match to protein family HMM PF00589; match to protein family HMM PF09003; integrase 1400266 439851001542 SeD_A1432 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 integrase YP_002215264.1 1399187 R 439851 CDS YP_002215265.1 198245511 complement(1400263..1401210) 1 NC_011205.1 exodeoxyribonuclease 8 1401210 439851001543 SeD_A1433 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 exodeoxyribonuclease 8 YP_002215265.1 1400263 R 439851 CDS YP_002215266.1 198244105 1401400..1401687 1 NC_011205.1 lytic enzyme 1401687 439851001544 SeD_A1434 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lytic enzyme YP_002215266.1 1401400 D 439851 CDS YP_002215267.1 198244847 1401684..1402217 1 NC_011205.1 hypothetical protein 1402217 439851001545 SeD_A1435 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215267.1 1401684 D 439851 CDS YP_002215268.1 198244439 complement(1402202..1402321) 1 NC_011205.1 identified by glimmer; hypothetical protein 1402321 439851001546 SeD_A1436 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215268.1 1402202 R 439851 CDS YP_002215269.1 198244074 complement(1402474..1402641) 1 NC_011205.1 hypothetical protein 1402641 439851001547 SeD_A1437 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215269.1 1402474 R 439851 CDS YP_002215270.1 198243850 complement(1402706..1402897) 1 NC_011205.1 identified by glimmer; hypothetical protein 1402897 439851001548 SeD_A1438 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215270.1 1402706 R 439851 CDS YP_002215271.1 198243230 1402952..1403215 1 NC_011205.1 gifsy-2 prophage protein 1403215 439851001549 SeD_A1439 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gifsy-2 prophage protein YP_002215271.1 1402952 D 439851 CDS YP_002215272.1 198245717 1404982..1405152 1 NC_011205.1 identified by glimmer; hypothetical protein 1405152 439851001552 SeD_A1442 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215272.1 1404982 D 439851 CDS YP_002215273.1 198243088 1405119..1405244 1 NC_011205.1 arsenical pump membrane protein 1405244 439851001553 SeD_A1443 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arsenical pump membrane protein YP_002215273.1 1405119 D 439851 CDS YP_002215274.1 198243627 complement(1405758..1405904) 1 NC_011205.1 hypothetical protein 1405904 439851001554 SeD_A1444 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215274.1 1405758 R 439851 CDS YP_002215275.1 198243055 complement(1406392..1407006) 1 NC_011205.1 inner membrane protein 1407006 439851001555 SeD_A1445 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002215275.1 1406392 R 439851 CDS YP_002215276.1 198242824 complement(1407016..1407174) 1 NC_011205.1 hypothetical protein 1407174 439851001556 SeD_A1446 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215276.1 1407016 R 439851 CDS YP_002215277.1 198241876 complement(1408616..1408744) 1 NC_011205.1 identified by glimmer; hypothetical protein 1408744 439851001557 SeD_A1447 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215277.1 1408616 R 439851 CDS YP_008169828.1 528879897 1410010..1410867 1 NC_011205.1 transposase 1410867 439851001558 SeD_A1448 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transposase YP_008169828.1 1410010 D 439851 CDS YP_008169829.1 528879898 1410867..1411013 1 NC_011205.1 transposase 1411013 439851001559 SeD_A1449 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transposase YP_008169829.1 1410867 D 439851 CDS YP_008169830.1 528879899 1411026..1411157 1 NC_011205.1 transposase 1411157 439851001560 SeD_A1450 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transposase YP_008169830.1 1411026 D 439851 CDS YP_002215278.1 198244351 complement(1411603..1411749) 1 NC_011205.1 hypothetical protein 1411749 439851001561 SeD_A1451 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215278.1 1411603 R 439851 CDS YP_002215279.1 198245625 1411972..1412166 1 NC_011205.1 hypothetical protein 1412166 439851001562 SeD_A1452 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215279.1 1411972 D 439851 CDS YP_002215280.1 198246222 1412277..1412714 1 NC_011205.1 acetyltransferase 1412714 439851001563 SeD_A1453 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetyltransferase YP_002215280.1 1412277 D 439851 CDS YP_002215281.1 198242948 complement(1413087..1413563) 1 NC_011205.1 hypothetical protein 1413563 439851001564 SeD_A1454 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215281.1 1413087 R 439851 CDS YP_002215282.1 198244590 complement(1414558..1414689) 1 NC_011205.1 identified by glimmer; hypothetical protein 1414689 439851001566 SeD_A1456 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215282.1 1414558 R 439851 CDS YP_002215283.1 198244228 1414970..1415692 1 NC_011205.1 identified by match to protein family HMM PF05364; match to protein family HMM PF07487; guanine nucleotide exchange factor SopE 1415692 439851001567 SeD_A1457 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 guanine nucleotide exchange factor SopE YP_002215283.1 1414970 D 439851 CDS YP_002215284.1 198245880 1415766..1415891 1 NC_011205.1 hypothetical protein 1415891 439851001568 SeD_A1458 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215284.1 1415766 D 439851 CDS YP_002215285.1 198244962 1415977..1416141 1 NC_011205.1 inner membrane protein 1416141 439851001569 SeD_A1459 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002215285.1 1415977 D 439851 CDS YP_002215286.1 198242715 1416174..1416347 1 NC_011205.1 identified by glimmer; hypothetical protein 1416347 439851001570 SeD_A1460 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215286.1 1416174 D 439851 CDS YP_002215287.1 198242070 1416365..1417015 1 NC_011205.1 Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins; serine/threonine protein phosphatase 1 1417015 pphA 439851001571 pphA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 serine/threonine protein phosphatase 1 YP_002215287.1 1416365 D 439851 CDS YP_002215288.1 198243926 complement(1417034..1417168) 1 NC_011205.1 identified by match to protein family HMM PF07358; hypothetical protein 1417168 439851001572 SeD_A1462 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215288.1 1417034 R 439851 CDS YP_002215289.1 198244523 complement(1417336..1417575) 1 NC_011205.1 identified by match to protein family HMM PF07351; hypothetical protein 1417575 439851001573 SeD_A1463 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215289.1 1417336 R 439851 CDS YP_002215290.1 198242984 complement(1417587..1417718) 1 NC_011205.1 identified by glimmer; hypothetical protein 1417718 439851001574 SeD_A1464 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215290.1 1417587 R 439851 CDS YP_002215291.1 198244837 complement(1417690..1419129) 1 NC_011205.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 1419129 yebU 439851001575 yebU Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 rRNA (cytosine-C(5)-)-methyltransferase RsmF YP_002215291.1 1417690 R 439851 CDS YP_002215292.1 198243769 complement(1419207..1421840) 1 NC_011205.1 identified by match to protein family HMM PF02470; mce-related protein 1421840 439851001576 SeD_A1466 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 mce-related protein YP_002215292.1 1419207 R 439851 CDS YP_002215293.1 198243288 complement(1421809..1423092) 1 NC_011205.1 identified by match to protein family HMM PF04403; match to protein family HMM TIGR00155; PqiA family integral membrane protein 1423092 439851001577 SeD_A1467 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PqiA family integral membrane protein YP_002215293.1 1421809 R 439851 CDS YP_002215294.1 198245505 1423221..1423718 1 NC_011205.1 identified by match to protein family HMM PF01590; GAF domain-containing protein 1423718 439851001578 SeD_A1468 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GAF domain-containing protein YP_002215294.1 1423221 D 439851 CDS YP_002215295.1 198242733 1423816..1424502 1 NC_011205.1 affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector 1424502 proQ 439851001579 proQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 solute/DNA competence effector YP_002215295.1 1423816 D 439851 CDS YP_002215296.1 198244506 1424522..1426570 1 NC_011205.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 1426570 prc 439851001580 prc Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 carboxy-terminal protease YP_002215296.1 1424522 D 439851 CDS YP_002215297.1 198245839 1426763..1427644 1 NC_011205.1 metalloprotease; heat shock protein HtpX 1427644 439851001581 SeD_A1471 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 heat shock protein HtpX YP_002215297.1 1426763 D 439851 CDS YP_002215298.1 198245963 1429241..1430032 1 NC_011205.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339; transcriptional regulator KdgR 1430032 439851001583 SeD_A1473 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator KdgR YP_002215298.1 1429241 D 439851 CDS YP_002215299.1 198243945 complement(1430244..1430483) 1 NC_011205.1 hypothetical protein 1430483 439851001584 SeD_A1474 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215299.1 1430244 R 439851 CDS YP_002215300.1 198242020 1430641..1430784 1 NC_011205.1 hypothetical protein 1430784 439851001585 SeD_A1475 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215300.1 1430641 D 439851 CDS YP_002215301.1 198244639 1430855..1431142 1 NC_011205.1 hypothetical protein 1431142 439851001586 SeD_A1476 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215301.1 1430855 D 439851 CDS YP_002215302.1 198243334 1431368..1431484 1 NC_011205.1 identified by glimmer; hypothetical protein 1431484 439851001587 SeD_A1477 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215302.1 1431368 D 439851 CDS YP_002215303.1 198245948 1431947..1432156 1 NC_011205.1 identified by match to protein family HMM PF00313; cold shock-like protein CspC 1432156 cspC 439851001588 cspC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cold shock-like protein CspC YP_002215303.1 1431947 D 439851 CDS YP_002215304.1 198244061 1432376..1434121 1 NC_011205.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; peptidoglycan synthetase FtsI 1434121 439851001589 SeD_A1479 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidoglycan synthetase FtsI YP_002215304.1 1432376 D 439851 CDS YP_002215305.1 198242685 1434187..1434996 1 NC_011205.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase 1434996 rrmA 439851001590 rrmA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 23S rRNA methyltransferase YP_002215305.1 1434187 D 439851 CDS YP_002215306.1 198242054 complement(1434993..1435559) 1 NC_011205.1 identified by match to protein family HMM PF02659; membrane protein YebN 1435559 439851001591 SeD_A1481 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 membrane protein YebN YP_002215306.1 1434993 R 439851 CDS YP_002215307.1 198243424 complement(1435969..1436427) 1 NC_011205.1 identified by match to protein family HMM PF06173; hypothetical protein 1436427 439851001592 SeD_A1483 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215307.1 1435969 R 439851 CDS YP_002215308.1 198244712 complement(1436486..1437337) 1 NC_011205.1 hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID 1437337 manZ 439851001593 manZ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system mannose-specific transporter subunit IID YP_002215308.1 1436486 R 439851 CDS YP_002215309.1 198242292 complement(1437350..1438150) 1 NC_011205.1 identified by match to protein family HMM PF03609; match to protein family HMM TIGR00822; PTS system mannose-specific transporter subunit IIC 1438150 manY 439851001594 manY Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system mannose-specific transporter subunit IIC YP_002215309.1 1437350 R 439851 CDS YP_002215310.1 198243985 complement(1438203..1439171) 1 NC_011205.1 identified by match to protein family HMM PF03610; match to protein family HMM PF03830; match to protein family HMM TIGR00824; match to protein family HMM TIGR00854; PTS system mannose-specific transporter subunit IIAB 1439171 manX 439851001595 manX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system mannose-specific transporter subunit IIAB YP_002215310.1 1438203 R 439851 CDS YP_002215311.1 198245489 1439644..1441203 1 NC_011205.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03471; match to protein family HMM PF03741; hypothetical protein 1441203 439851001596 SeD_A1487 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215311.1 1439644 D 439851 CDS YP_002215312.1 198242759 complement(1441225..1442607) 1 NC_011205.1 identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein 1442607 439851001597 SeD_A1489 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cyclic diguanylate phosphodiesterase (EAL) domain-containing protein YP_002215312.1 1441225 R 439851 CDS YP_002215313.1 198245405 1442578..1442706 1 NC_011205.1 identified by glimmer; hypothetical protein 1442706 439851001598 SeD_A1488 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215313.1 1442578 D 439851 CDS YP_002215314.1 198246096 complement(1442964..1444328) 1 NC_011205.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 1444328 439851001599 SeD_A1490 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-serine ammonia-lyase YP_002215314.1 1442964 R 439851 CDS YP_002215315.1 198241899 complement(1444592..1445170) 1 NC_011205.1 identified by match to protein family HMM PF00293; hypothetical protein 1445170 439851001600 SeD_A1491 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215315.1 1444592 R 439851 CDS YP_002215316.1 198242530 complement(1445174..1446538) 1 NC_011205.1 identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553; aminodeoxychorismate synthase subunit I 1446538 pabB 439851001601 pabB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aminodeoxychorismate synthase subunit I YP_002215316.1 1445174 R 439851 CDS YP_002215317.1 198244907 1446619..1446798 1 NC_011205.1 identified by match to protein family HMM PF03701; hypothetical protein 1446798 439851001602 SeD_A1493 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215317.1 1446619 D 439851 CDS YP_002215318.1 198242036 complement(1446804..1447148) 1 NC_011205.1 identified by match to protein family HMM PF01042; endoribonuclease L-PSP family protein 1447148 439851001603 SeD_A1494 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 endoribonuclease L-PSP family protein YP_002215318.1 1446804 R 439851 CDS YP_002215319.1 198242702 1447279..1449189 1 NC_011205.1 hypothetical protein 1449189 439851001604 SeD_A1495 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215319.1 1447279 D 439851 CDS YP_002215320.1 198245572 1449247..1449942 1 NC_011205.1 identified by match to protein family HMM PF00814; glycoprotease family protein 1449942 439851001605 SeD_A1496 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycoprotease family protein YP_002215320.1 1449247 D 439851 CDS YP_002215321.1 198246160 1450014..1450595 1 NC_011205.1 identified by match to protein family HMM PF03843; match to protein family HMM TIGR00752; outer membrane protein Slp 1450595 slp 439851001606 slp Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein Slp YP_002215321.1 1450014 D 439851 CDS YP_002215322.1 198244166 1450800..1452485 1 NC_011205.1 Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1452485 439851001607 SeD_A1498 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 long-chain-fatty-acid--CoA ligase YP_002215322.1 1450800 D 439851 CDS YP_002215323.1 198244835 1452558..1453685 1 NC_011205.1 identified by match to protein family HMM PF00570; match to protein family HMM PF01612; match to protein family HMM TIGR01388; ribonuclease D 1453685 rnd 439851001609 rnd Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonuclease D YP_002215323.1 1452558 D 439851 CDS YP_002215324.1 198242929 complement(1453807..1454073) 1 NC_011205.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1454073 minE 439851001610 minE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell division topological specificity factor MinE YP_002215324.1 1453807 R 439851 CDS YP_002215325.1 198243195 complement(1454077..1454889) 1 NC_011205.1 ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; cell division inhibitor MinD 1454889 minD 439851001611 minD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell division inhibitor MinD YP_002215325.1 1454077 R 439851 CDS YP_002215326.1 198241935 complement(1454913..1455620) 1 NC_011205.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 1455620 minC 439851001612 minC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 septum formation inhibitor YP_002215326.1 1454913 R 439851 CDS YP_002215327.1 198242296 1455605..1456039 1 NC_011205.1 identified by match to protein family HMM PF05166; hypothetical protein 1456039 439851001613 SeD_A1504 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215327.1 1455605 D 439851 CDS YP_002215328.1 198242874 1456089..1456748 1 NC_011205.1 identified by match to protein family HMM PF01557; hypothetical protein 1456748 439851001614 SeD_A1505 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215328.1 1456089 D 439851 CDS YP_002215329.1 198244483 1456826..1457287 1 NC_011205.1 identified by match to protein family HMM PF03692; hypothetical protein 1457287 439851001615 SeD_A1506 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215329.1 1456826 D 439851 CDS YP_002215330.1 198246089 1457639..1457776 1 NC_011205.1 hypothetical protein 1457776 439851001616 SeD_A1507 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215330.1 1457639 D 439851 CDS YP_002215331.1 198243710 complement(1457839..1457955) 1 NC_011205.1 identified by glimmer; hypothetical protein 1457955 439851001617 SeD_A1508 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215331.1 1457839 R 439851 CDS YP_002215332.1 198243974 1457968..1458141 1 NC_011205.1 identified by match to protein family HMM PF08178; hypothetical protein 1458141 439851001618 SeD_A1509 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215332.1 1457968 D 439851 CDS YP_002215333.1 198242451 complement(1458213..1458554) 1 NC_011205.1 identified by match to protein family HMM PF09313; tellurite resistance protein TehB 1458554 439851001619 SeD_A1510 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tellurite resistance protein TehB YP_002215333.1 1458213 R 439851 CDS YP_002215334.1 198241963 complement(1458663..1459193) 1 NC_011205.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 1459193 439851001620 SeD_A1511 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 disulfide bond formation protein B YP_002215334.1 1458663 R 439851 CDS YP_002215335.1 198245987 complement(1459335..1460879) 1 NC_011205.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 1460879 nhaB 439851001621 nhaB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sodium/proton antiporter YP_002215335.1 1459335 R 439851 CDS YP_002215336.1 198245475 1461099..1461818 1 NC_011205.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 1461818 fadR 439851001622 fadR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fatty acid metabolism regulator YP_002215336.1 1461099 D 439851 CDS YP_002215337.1 198241991 complement(1461865..1463397) 1 NC_011205.1 identified by match to protein family HMM PF04293; SpoVR family protein 1463397 439851001623 SeD_A1514 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 SpoVR family protein YP_002215337.1 1461865 R 439851 CDS YP_002215338.1 198245214 1463720..1465018 1 NC_011205.1 catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 1465018 439851001624 SeD_A1515 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-amino acid dehydrogenase small subunit YP_002215338.1 1463720 D 439851 CDS YP_002215339.1 198244745 1465032..1466102 1 NC_011205.1 catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase 1466102 dadX 439851001625 dadX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 alanine racemase YP_002215339.1 1465032 D 439851 CDS YP_002215340.1 198244237 complement(1466165..1467898) 1 NC_011205.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 1467898 439851001626 SeD_A1517 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 potassium/proton antiporter YP_002215340.1 1466165 R 439851 CDS YP_002215341.1 198242525 complement(1467995..1468909) 1 NC_011205.1 catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; L,D-carboxypeptidase A 1468909 ldcA 439851001627 ldcA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L,D-carboxypeptidase A YP_002215341.1 1467995 R 439851 CDS YP_002215342.1 198246183 complement(1469705..1470439) 1 NC_011205.1 identified by match to protein family HMM PF07238; match to protein family HMM PF07317; hypothetical protein 1470439 439851001629 SeD_A1520 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215342.1 1469705 R 439851 CDS YP_002215343.1 198245435 1470608..1470862 1 NC_011205.1 identified by match to protein family HMM PF04226; transglycosylase-associated protein 1470862 439851001630 SeD_A1521 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transglycosylase-associated protein YP_002215343.1 1470608 D 439851 CDS YP_002215344.1 198244089 complement(1470925..1472637) 1 NC_011205.1 periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; trehalase 1472637 treA 439851001631 treA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 trehalase YP_002215344.1 1470925 R 439851 CDS YP_002215345.1 198244564 1472717..1472833 1 NC_011205.1 identified by glimmer; hypothetical protein 1472833 439851001632 SeD_A1523 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215345.1 1472717 D 439851 CDS YP_002215346.1 198243116 complement(1472851..1474125) 1 NC_011205.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812; glutamate dehydrogenase 1474125 439851001633 SeD_A1524 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamate dehydrogenase YP_002215346.1 1472851 R 439851 CDS YP_002215347.1 198245960 complement(1474622..1475758) 1 NC_011205.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome D ubiquinol oxidase subunit II 1475758 cydB 439851001634 cydB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome D ubiquinol oxidase subunit II YP_002215347.1 1474622 R 439851 CDS YP_002215348.1 198244006 complement(1475770..1477314) 1 NC_011205.1 identified by match to protein family HMM PF01654; cytochrome D ubiquinol oxidase subunit 1 1477314 439851001635 SeD_A1526 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome D ubiquinol oxidase subunit 1 YP_002215348.1 1475770 R 439851 CDS YP_002215349.1 198242199 complement(1477389..1478237) 1 NC_011205.1 identified by match to protein family HMM PF04809; hydrogenase-1 operon protein HyaF 1478237 439851001636 SeD_A1527 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase-1 operon protein HyaF YP_002215349.1 1477389 R 439851 CDS YP_002215350.1 198244243 complement(1478234..1478638) 1 NC_011205.1 involved in processing hydrogenase proteins HyaA and HyaB; hydrogenase-1 operon protein HyaE 1478638 439851001637 SeD_A1528 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase-1 operon protein HyaE YP_002215350.1 1478234 R 439851 CDS YP_002215351.1 198244948 complement(1478628..1479224) 1 NC_011205.1 HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); hydrogenase 1 maturation protease 1479224 hybD 439851001638 hybD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase 1 maturation protease YP_002215351.1 1478628 R 439851 CDS YP_002215352.1 198245261 complement(1479221..1479952) 1 NC_011205.1 identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125; hydrogenase 1 b-type cytochrome subunit 1479952 cybH 439851001639 cybH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase 1 b-type cytochrome subunit YP_002215352.1 1479221 R 439851 CDS YP_002215353.1 198245697 complement(1479971..1481764) 1 NC_011205.1 involved in hydrogen cycling during fermentative growth; hydrogenase 1 large subunit 1481764 439851001640 SeD_A1531 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase 1 large subunit YP_002215353.1 1479971 R 439851 CDS YP_002215354.1 198242210 complement(1481761..1482963) 1 NC_011205.1 identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; hydrogenase-1 small chain 1482963 439851001641 SeD_A1532 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase-1 small chain YP_002215354.1 1481761 R 439851 CDS YP_002215355.1 198245267 complement(1483538..1483651) 1 NC_011205.1 identified by glimmer; hypothetical protein 1483651 439851001642 SeD_A1533 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215355.1 1483538 R 439851 CDS YP_002215356.1 198243242 complement(1483794..1484246) 1 NC_011205.1 hypothetical protein 1484246 439851001643 SeD_A1534 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215356.1 1483794 R 439851 CDS YP_002215357.1 198242084 complement(1484285..1484566) 1 NC_011205.1 identified by glimmer; hypothetical protein 1484566 439851001644 SeD_A1535 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215357.1 1484285 R 439851 CDS YP_002215358.1 198242721 1484747..1484872 1 NC_011205.1 identified by glimmer; hypothetical protein 1484872 439851001645 SeD_A1536 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215358.1 1484747 D 439851 CDS YP_002215359.1 198243402 complement(1485664..1486755) 1 NC_011205.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1486755 engD 439851001646 engD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GTP-dependent nucleic acid-binding protein EngD YP_002215359.1 1485664 R 439851 CDS YP_002215360.1 198243363 complement(1486872..1487456) 1 NC_011205.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1487456 pth 439851001647 pth Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidyl-tRNA hydrolase YP_002215360.1 1486872 R 439851 CDS YP_002215361.1 198243950 1487732..1488010 1 NC_011205.1 YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function; hypothetical protein 1488010 439851001648 SeD_A1539 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215361.1 1487732 D 439851 CDS YP_002215362.1 198244029 complement(1488055..1489740) 1 NC_011205.1 role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; sulfate transporter YchM 1489740 439851001649 SeD_A1540 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfate transporter YchM YP_002215362.1 1488055 R 439851 CDS YP_002215363.1 198244774 complement(1489865..1490812) 1 NC_011205.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1490812 prs 439851001650 prs Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribose-phosphate pyrophosphokinase YP_002215363.1 1489865 R 439851 CDS YP_002215364.1 198242629 1490911..1491081 1 NC_011205.1 identified by glimmer; hypothetical protein 1491081 439851001651 SeD_A1542 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215364.1 1490911 D 439851 CDS YP_002215365.1 198242110 complement(1491078..1491926) 1 NC_011205.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1491926 ipk 439851001652 ipk Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_002215365.1 1491078 R 439851 CDS YP_002215366.1 198243441 complement(1491926..1492549) 1 NC_011205.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 1492549 lolB 439851001653 lolB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane lipoprotein LolB YP_002215366.1 1491926 R 439851 CDS YP_002215367.1 198243344 1492567..1492695 1 NC_011205.1 identified by glimmer; hypothetical protein 1492695 439851001654 SeD_A1545 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215367.1 1492567 D 439851 CDS YP_002215368.1 198242681 1492863..1494119 1 NC_011205.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1494119 hemA 439851001655 hemA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamyl-tRNA reductase YP_002215368.1 1492863 D 439851 CDS YP_002215369.1 198242115 1494160..1495242 1 NC_011205.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1495242 prfA 439851001656 prfA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptide chain release factor 1 YP_002215369.1 1494160 D 439851 CDS YP_002215370.1 198245434 1495242..1496075 1 NC_011205.1 HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1496075 439851001657 SeD_A1548 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_002215370.1 1495242 D 439851 CDS YP_002215371.1 198244836 1496084..1496461 1 NC_011205.1 identified by match to protein family HMM PF04247; transcriptional regulator 1496461 439851001658 SeD_A1549 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002215371.1 1496084 D 439851 CDS YP_002215372.1 198244208 1496465..1497274 1 NC_011205.1 transcriptional regulator 1497274 sirB1 439851001659 sirB1 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002215372.1 1496465 D 439851 CDS YP_002215373.1 198243566 1497312..1498166 1 NC_011205.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1498166 kdsA 439851001660 kdsA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-dehydro-3-deoxyphosphooctonate aldolase YP_002215373.1 1497312 D 439851 CDS YP_002215374.1 198242332 complement(1498220..1499320) 1 NC_011205.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00846; calcium/sodium:proton antiporter 1499320 439851001661 SeD_A1552 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 calcium/sodium:proton antiporter YP_002215374.1 1498220 R 439851 CDS YP_002215375.1 198241814 1499588..1499818 1 NC_011205.1 in Escherichia coli this protein ly regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; cation transport regulator 1499818 chaB 439851001662 chaB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cation transport regulator YP_002215375.1 1499588 D 439851 CDS YP_002215376.1 198242186 complement(1499898..1500251) 1 NC_011205.1 identified by match to protein family HMM PF02635; hypothetical protein 1500251 439851001663 SeD_A1554 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215376.1 1499898 R 439851 CDS YP_002215377.1 198246213 1500428..1501852 1 NC_011205.1 hypothetical protein 1501852 439851001664 SeD_A1555 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215377.1 1500428 D 439851 CDS YP_002215378.1 198245278 complement(1501853..1502503) 1 NC_011205.1 two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; transcriptional regulator NarL 1502503 narL 439851001665 narL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator NarL YP_002215378.1 1501853 R 439851 CDS YP_002215379.1 198244934 complement(1502496..1504292) 1 NC_011205.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730; nitrate/nitrite sensor protein NarX 1504292 439851001666 SeD_A1557 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitrate/nitrite sensor protein NarX YP_002215379.1 1502496 R 439851 CDS YP_002215380.1 198243489 1504633..1506030 1 NC_011205.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886; nitrite extrusion protein 1 1506030 439851001667 SeD_A1558 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitrite extrusion protein 1 YP_002215380.1 1504633 D 439851 CDS YP_002215381.1 198243056 1506418..1510161 1 NC_011205.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; nitrate reductase 1 subunit alpha 1510161 narG 439851001668 narG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitrate reductase 1 subunit alpha YP_002215381.1 1506418 D 439851 CDS YP_002215382.1 198243341 1510158..1511696 1 NC_011205.1 identified by match to protein family HMM TIGR01660; nitrate reductase 1 subunit beta 1511696 narH 439851001669 narH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitrate reductase 1 subunit beta YP_002215382.1 1510158 D 439851 CDS YP_002215383.1 198241774 1511693..1512403 1 NC_011205.1 identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684; nitrate reductase molybdenum cofactor assembly chaperone 1 1512403 narJ 439851001670 narJ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitrate reductase molybdenum cofactor assembly chaperone 1 YP_002215383.1 1511693 D 439851 CDS YP_002215384.1 198246249 1512403..1513080 1 NC_011205.1 identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase gamma subunit 1513080 narI 439851001671 narI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 respiratory nitrate reductase gamma subunit YP_002215384.1 1512403 D 439851 CDS YP_002215385.1 198245593 complement(1513122..1513286) 1 NC_011205.1 hypothetical protein 1513286 439851001672 SeD_A1563 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215385.1 1513122 R 439851 CDS YP_002215386.1 198244980 1513322..1514851 1 NC_011205.1 identified by match to protein family HMM PF08238; tetratricopeptide repeat protein 1514851 439851001673 SeD_A1564 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tetratricopeptide repeat protein YP_002215386.1 1513322 D 439851 CDS YP_002215387.1 198243336 complement(1516198..1517040) 1 NC_011205.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1517040 purU 439851001681 purU Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formyltetrahydrofolate deformylase YP_002215387.1 1516198 R 439851 CDS YP_002215388.1 198243145 complement(1517091..1517597) 1 NC_011205.1 identified by match to protein family HMM PF02810; hypothetical protein 1517597 439851001682 SeD_A1573 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215388.1 1517091 R 439851 CDS YP_002215389.1 198242035 1517660..1518565 1 NC_011205.1 identified by match to protein family HMM PF01734; hypothetical protein 1518565 439851001683 SeD_A1574 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215389.1 1517660 D 439851 CDS YP_002215390.1 198241848 1518656..1519669 1 NC_011205.1 identified by match to protein family HMM PF00072; response regulator of RpoS 1519669 439851001684 SeD_A1575 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 response regulator of RpoS YP_002215390.1 1518656 D 439851 CDS YP_002215391.1 198245859 1519872..1520780 1 NC_011205.1 together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP-glucose-1-phosphate uridylyltransferase 1520780 galU 439851001685 galU Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UTP-glucose-1-phosphate uridylyltransferase YP_002215391.1 1519872 D 439851 CDS YP_002215392.1 198245555 complement(1520912..1521325) 1 NC_011205.1 identified by match to protein family HMM PF00816; global DNA-binding transcriptional dual regulator H-NS 1521325 hns 439851001686 hns Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 global DNA-binding transcriptional dual regulator H-NS YP_002215392.1 1520912 R 439851 CDS YP_002215393.1 198245086 1521988..1522605 1 NC_011205.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1522605 tdk 439851001687 tdk Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thymidine kinase YP_002215393.1 1521988 D 439851 CDS YP_002215394.1 198244315 complement(1522802..1525480) 1 NC_011205.1 identified by match to protein family HMM PF00171; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1525480 adhE 439851001688 adhE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_002215394.1 1522802 R 439851 CDS YP_002215395.1 198243875 1525957..1526604 1 NC_011205.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427; hypothetical protein 1526604 439851001689 SeD_A1580 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215395.1 1525957 D 439851 CDS YP_002215396.1 198243218 1527368..1528999 1 NC_011205.1 identified by match to protein family HMM PF00496; periplasmic oligopeptide-binding protein 1528999 439851001690 SeD_A1581 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 periplasmic oligopeptide-binding protein YP_002215396.1 1527368 D 439851 CDS YP_002215397.1 198245863 1529121..1530041 1 NC_011205.1 identified by match to protein family HMM PF00528; oligopeptide transporter permease 1530041 oppB 439851001691 oppB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oligopeptide transporter permease YP_002215397.1 1529121 D 439851 CDS YP_002215398.1 198242128 1530056..1530964 1 NC_011205.1 identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease OppC 1530964 oppC 439851001692 oppC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oligopeptide ABC transporter permease OppC YP_002215398.1 1530056 D 439851 CDS YP_002215399.1 198242840 1530976..1531983 1 NC_011205.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide transporter ATP-binding component 1531983 oppD 439851001693 oppD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oligopeptide transporter ATP-binding component YP_002215399.1 1530976 D 439851 CDS YP_002215400.1 198243369 1531980..1532984 1 NC_011205.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide ABC transporter ATP-binding protein OppF 1532984 oppF 439851001694 oppF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oligopeptide ABC transporter ATP-binding protein OppF YP_002215400.1 1531980 D 439851 CDS YP_002215401.1 198243026 1533032..1533868 1 NC_011205.1 identified by match to protein family HMM PF00520; match to protein family HMM PF07885; Ion transport protein 1533868 439851001695 SeD_A1586 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Ion transport protein YP_002215401.1 1533032 D 439851 CDS YP_002215402.1 198244268 complement(1534279..1535739) 1 NC_011205.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 1535739 cls 439851001697 cls Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cardiolipin synthetase YP_002215402.1 1534279 R 439851 CDS YP_002215403.1 198244956 1535918..1536055 1 NC_011205.1 hypothetical protein 1536055 439851001698 SeD_A1589 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215403.1 1535918 D 439851 CDS YP_002215404.1 198244794 complement(1536099..1536395) 1 NC_011205.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; hypothetical protein 1536395 439851001699 SeD_A1590 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215404.1 1536099 R 439851 CDS YP_002215405.1 198245116 1536619..1537347 1 NC_011205.1 membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins; transport protein TonB 1537347 439851001700 SeD_A1591 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transport protein TonB YP_002215405.1 1536619 D 439851 CDS YP_002215406.1 198242033 complement(1537407..1537799) 1 NC_011205.1 YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins; acyl-CoA thioester hydrolase 1537799 439851001701 SeD_A1592 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acyl-CoA thioester hydrolase YP_002215406.1 1537407 R 439851 CDS YP_002215407.1 198245328 complement(1537969..1538508) 1 NC_011205.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1538508 ispZ 439851001702 ispZ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 intracellular septation protein A YP_002215407.1 1537969 R 439851 CDS YP_002215408.1 198245915 complement(1538565..1539308) 1 NC_011205.1 identified by match to protein family HMM PF06790; hypothetical protein 1539308 439851001703 SeD_A1594 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215408.1 1538565 R 439851 CDS YP_002215409.1 198244085 complement(1539334..1539738) 1 NC_011205.1 identified by match to protein family HMM PF03692; ferredoxin 1539738 439851001704 SeD_A1595 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ferredoxin YP_002215409.1 1539334 R 439851 CDS YP_002215410.1 198244646 1540076..1540714 1 NC_011205.1 receptor for colicin S4; outer membrane protein W 1540714 439851001705 SeD_A1596 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein W YP_002215410.1 1540076 D 439851 CDS YP_002215411.1 198243337 complement(1540796..1541674) 1 NC_011205.1 identified by match to protein family HMM PF05067; catalase 1541674 439851001706 SeD_A1597 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 catalase YP_002215411.1 1540796 R 439851 CDS YP_002215412.1 198243771 complement(1541694..1542200) 1 NC_011205.1 identified by match to protein family HMM PF05974; hypothetical protein 1542200 439851001707 SeD_A1598 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215412.1 1541694 R 439851 CDS YP_002215413.1 198242252 complement(1542274..1542777) 1 NC_011205.1 identified by match to protein family HMM PF05974; hypothetical protein 1542777 439851001708 SeD_A1599 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215413.1 1542274 R 439851 CDS YP_002215414.1 198245282 complement(1542867..1543049) 1 NC_011205.1 hypothetical protein 1543049 439851001709 SeD_A1600 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215414.1 1542867 R 439851 CDS YP_002215415.1 198245481 complement(1543529..1544335) 1 NC_011205.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1544335 trpA 439851001710 trpA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tryptophan synthase subunit alpha YP_002215415.1 1543529 R 439851 CDS YP_002215416.1 198242751 complement(1544335..1545528) 1 NC_011205.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1545528 trpB 439851001711 trpB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tryptophan synthase subunit beta YP_002215416.1 1544335 R 439851 CDS YP_002215417.1 198243276 complement(1545538..1546896) 1 NC_011205.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1546896 439851001712 SeD_A1603 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_002215417.1 1545538 R 439851 CDS YP_002215418.1 198244045 complement(1546900..1548495) 1 NC_011205.1 bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase 1548495 trpD 439851001713 trpD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase YP_002215418.1 1546900 R 439851 CDS YP_002215419.1 198244516 complement(1548495..1550057) 1 NC_011205.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1550057 trpE 439851001714 trpE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anthranilate synthase component I YP_002215419.1 1548495 R 439851 CDS YP_002215420.1 198245413 1550351..1551199 1 NC_011205.1 identified by match to protein family HMM PF02811; phosphoesterase 1551199 439851001715 SeD_A1607 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoesterase YP_002215420.1 1550351 D 439851 CDS YP_002215421.1 198245890 1551207..1551827 1 NC_011205.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; hypothetical protein 1551827 439851001716 SeD_A1608 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215421.1 1551207 D 439851 CDS YP_002215422.1 198242127 1551928..1552803 1 NC_011205.1 catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; 23S rRNA pseudouridylate synthase B 1552803 rluB 439851001717 rluB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 23S rRNA pseudouridylate synthase B YP_002215422.1 1551928 D 439851 CDS YP_002215423.1 198242764 complement(1552890..1553480) 1 NC_011205.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1553480 cobO 439851001718 cobO Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_002215423.1 1552890 R 439851 CDS YP_002215424.1 198243109 complement(1553477..1554238) 1 NC_011205.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase 1554238 439851001719 SeD_A1611 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 short chain dehydrogenase YP_002215424.1 1553477 R 439851 CDS YP_002215425.1 198243766 1554476..1555522 1 NC_011205.1 SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease 1555522 439851001720 SeD_A1612 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 periplasmic protease YP_002215425.1 1554476 D 439851 CDS YP_002215426.1 198243002 complement(1555564..1555815) 1 NC_011205.1 hypothetical protein 1555815 439851001721 SeD_A1613 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215426.1 1555564 R 439851 CDS YP_002215427.1 198243642 1556218..1558815 1 NC_011205.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1558815 topA 439851001722 topA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA topoisomerase I YP_002215427.1 1556218 D 439851 CDS YP_002215428.1 198245743 1559226..1560200 1 NC_011205.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1560200 cysB 439851001723 cysB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator CysB YP_002215428.1 1559226 D 439851 CDS YP_002215429.1 198244146 1560493..1560621 1 NC_011205.1 hypothetical protein 1560621 439851001724 SeD_A1616 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215429.1 1560493 D 439851 CDS YP_002215430.1 198242787 1560631..1560792 1 NC_011205.1 hypothetical protein 1560792 439851001725 SeD_A1617 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215430.1 1560631 D 439851 CDS YP_002215431.1 198245523 1561177..1563852 1 NC_011205.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1563852 acnA 439851001726 acnA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aconitate hydratase YP_002215431.1 1561177 D 439851 CDS YP_002215432.1 198243208 complement(1563908..1564498) 1 NC_011205.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1564498 ribA 439851001727 ribA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GTP cyclohydrolase II YP_002215432.1 1563908 R 439851 CDS YP_002215433.1 198241996 1564694..1565458 1 NC_011205.1 identified by match to protein family HMM PF01569; phosphatidylglycerophosphatase B 1565458 439851001728 SeD_A1620 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphatidylglycerophosphatase B YP_002215433.1 1564694 D 439851 CDS YP_002215434.1 198244725 1565608..1565916 1 NC_011205.1 identified by match to protein family HMM PF06305; hypothetical protein 1565916 439851001729 SeD_A1621 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215434.1 1565608 D 439851 CDS YP_002215435.1 198242977 1565923..1567092 1 NC_011205.1 identified by match to protein family HMM PF07719; tetratricopeptide repeat protein 1567092 439851001730 SeD_A1622 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tetratricopeptide repeat protein YP_002215435.1 1565923 D 439851 CDS YP_002215436.1 198245693 complement(1567142..1567267) 1 NC_011205.1 identified by glimmer; hypothetical protein 1567267 439851001731 SeD_A1624 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215436.1 1567142 R 439851 CDS YP_002215437.1 198246180 1567223..1568020 1 NC_011205.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1568020 pyrF 439851001732 pyrF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 orotidine 5'-phosphate decarboxylase YP_002215437.1 1567223 D 439851 CDS YP_002215438.1 198244050 1568020..1568346 1 NC_011205.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 1568346 439851001733 SeD_A1625 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 translation initiation factor Sui1 YP_002215438.1 1568020 D 439851 CDS YP_002215439.1 198245949 complement(1568466..1568684) 1 NC_011205.1 lipoprotein 1568684 439851001734 SeD_A1626 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein YP_002215439.1 1568466 R 439851 CDS YP_002215440.1 198245337 complement(1568943..1569695) 1 NC_011205.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family transcriptional regulator 1569695 439851001735 SeD_A1627 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DeoR family transcriptional regulator YP_002215440.1 1568943 R 439851 CDS YP_002215441.1 198242684 complement(1569782..1569961) 1 NC_011205.1 hypothetical protein 1569961 439851001736 SeD_A1628 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215441.1 1569782 R 439851 CDS YP_002215442.1 198242265 complement(1570083..1572074) 1 NC_011205.1 c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; RNase II stability modulator 1572074 439851001737 SeD_A1629 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RNase II stability modulator YP_002215442.1 1570083 R 439851 CDS YP_002215443.1 198243929 complement(1572327..1574261) 1 NC_011205.1 Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 1574261 rnb 439851001738 rnb Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 exoribonuclease II YP_002215443.1 1572327 R 439851 CDS YP_002215444.1 198244068 complement(1575683..1576471) 1 NC_011205.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 1576471 fabI 439851001740 fabI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 enoyl-(acyl carrier protein) reductase YP_002215444.1 1575683 R 439851 CDS YP_002215445.1 198242464 complement(1576862..1577041) 1 NC_011205.1 hypothetical protein 1577041 439851001741 SeD_A1633 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215445.1 1576862 R 439851 CDS YP_002215446.1 198241984 1577472..1578449 1 NC_011205.1 inner membrane protein 1578449 439851001742 SeD_A1634 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002215446.1 1577472 D 439851 CDS YP_002215447.1 198245846 1578916..1579623 1 NC_011205.1 hypothetical protein 1579623 439851001743 SeD_A1635 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215447.1 1578916 D 439851 CDS YP_002215448.1 198245279 complement(1579639..1580445) 1 NC_011205.1 identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein SapF 1580445 sapF 439851001744 sapF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptide ABC transporter ATP-binding protein SapF YP_002215448.1 1579639 R 439851 CDS YP_002215449.1 198244645 complement(1580447..1581439) 1 NC_011205.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; peptide ABC transporter ATP-binding protein SapD 1581439 sapD 439851001745 sapD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptide ABC transporter ATP-binding protein SapD YP_002215449.1 1580447 R 439851 CDS YP_002215450.1 198244566 complement(1581439..1582329) 1 NC_011205.1 identified by match to protein family HMM PF00528; peptide ABC transporter permease SapC 1582329 sapC 439851001746 sapC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptide ABC transporter permease SapC YP_002215450.1 1581439 R 439851 CDS YP_002215451.1 198243540 complement(1582316..1583281) 1 NC_011205.1 identified by match to protein family HMM PF00528; peptide ABC transporter permease SapB 1583281 sapB 439851001747 sapB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptide ABC transporter permease SapB YP_002215451.1 1582316 R 439851 CDS YP_002215452.1 198243286 complement(1583278..1584927) 1 NC_011205.1 identified by match to protein family HMM PF00496; peptide transport periplasmic protein SapA 1584927 439851001748 SeD_A1640 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptide transport periplasmic protein SapA YP_002215452.1 1583278 R 439851 CDS YP_002215453.1 198242603 complement(1585039..1586034) 1 NC_011205.1 transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; phage shock protein operon transcriptional activator 1586034 pspF 439851001749 pspF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage shock protein operon transcriptional activator YP_002215453.1 1585039 R 439851 CDS YP_002215454.1 198242518 1586190..1586858 1 NC_011205.1 involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; phage shock protein PspA 1586858 pspA 439851001750 pspA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage shock protein PspA YP_002215454.1 1586190 D 439851 CDS YP_002215455.1 198244940 1586918..1587142 1 NC_011205.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 1587142 pspB 439851001751 pspB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage shock protein B YP_002215455.1 1586918 D 439851 CDS YP_002215456.1 198244317 1587142..1587501 1 NC_011205.1 with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock; DNA-binding transcriptional activator PspC 1587501 pspC 439851001752 pspC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional activator PspC YP_002215456.1 1587142 D 439851 CDS YP_002215457.1 198243496 1587524..1587742 1 NC_011205.1 identified by match to protein family HMM TIGR02979; peripheral inner membrane phage-shock protein 1587742 pspD 439851001753 pspD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peripheral inner membrane phage-shock protein YP_002215457.1 1587524 D 439851 CDS YP_002215458.1 198243060 1587818..1588132 1 NC_011205.1 rhodanese; catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide; thiosulfate:cyanide sulfurtransferase 1588132 439851001754 SeD_A1646 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiosulfate:cyanide sulfurtransferase YP_002215458.1 1587818 D 439851 CDS YP_002215459.1 198242792 1588281..1589678 1 NC_011205.1 identified by match to protein family HMM PF04317; hypothetical protein 1589678 439851001755 SeD_A1647 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215459.1 1588281 D 439851 CDS YP_002215460.1 198242282 1589675..1590736 1 NC_011205.1 identified by match to protein family HMM PF05128; match to protein family HMM TIGR01620; hypothetical protein 1590736 439851001756 SeD_A1648 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215460.1 1589675 D 439851 CDS YP_002215461.1 198241946 1590884..1592425 1 NC_011205.1 regulates genes involved in the biosynthesis and transport of aromatic amino acids; DNA-binding transcriptional regulator TyrR 1592425 439851001757 SeD_A1649 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator TyrR YP_002215461.1 1590884 D 439851 CDS YP_002215462.1 198245820 complement(1592515..1593021) 1 NC_011205.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1593021 tpx 439851001758 tpx Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiol peroxidase YP_002215462.1 1592515 R 439851 CDS YP_002215463.1 198244730 1593137..1594102 1 NC_011205.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase / muconate lactonizing enzyme, N- domain-containing protein 1594102 439851001759 SeD_A1651 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 mandelate racemase / muconate lactonizing enzyme, N- domain-containing protein YP_002215463.1 1593137 D 439851 CDS YP_002215464.1 198245522 complement(1594077..1594805) 1 NC_011205.1 identified by match to protein family HMM PF00246; murein peptide amidase A 1594805 439851001760 SeD_A1652 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 murein peptide amidase A YP_002215464.1 1594077 R 439851 CDS YP_002215465.1 198243089 1594995..1596608 1 NC_011205.1 identified by match to protein family HMM PF00496; periplasmic murein peptide-binding protein 1596608 439851001761 SeD_A1653 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 periplasmic murein peptide-binding protein YP_002215465.1 1594995 D 439851 CDS YP_002215466.1 198243310 complement(1596705..1597634) 1 NC_011205.1 identified by match to protein family HMM PF05368; isoflavone reductase 1597634 439851001762 SeD_A1654 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 isoflavone reductase YP_002215466.1 1596705 R 439851 CDS YP_002215467.1 198243188 1597753..1598658 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; regulatory protein LysR:LysR, substrate-binding 1598658 439851001763 SeD_A1655 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 regulatory protein LysR:LysR, substrate-binding YP_002215467.1 1597753 D 439851 CDS YP_002215468.1 198243842 1598934..1599803 1 NC_011205.1 identified by match to protein family HMM PF00248; 2,5-diketo-D-gluconate reductase A 1599803 439851001764 SeD_A1656 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2,5-diketo-D-gluconate reductase A YP_002215468.1 1598934 D 439851 CDS YP_002215469.1 198242190 complement(1599894..1600607) 1 NC_011205.1 identified by match to protein family HMM PF00106; oxidoreductase 1600607 439851001765 SeD_A1657 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxidoreductase YP_002215469.1 1599894 R 439851 CDS YP_002215470.1 198242734 1600685..1601275 1 NC_011205.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1601275 439851001766 SeD_A1658 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 TetR family transcriptional regulator YP_002215470.1 1600685 D 439851 CDS YP_002215471.1 198242848 1601479..1601640 1 NC_011205.1 identified by match to protein family HMM PF06004; outer membrane lipoprotein 1601640 439851001767 SeD_A1659 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane lipoprotein YP_002215471.1 1601479 D 439851 CDS YP_002215472.1 198245163 complement(1601854..1602963) 1 NC_011205.1 hypothetical protein 1602963 439851001768 SeD_A1660 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215472.1 1601854 R 439851 CDS YP_002215473.1 198245872 complement(1603355..1604206) 1 NC_011205.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445; regulatory protein 1604206 439851001769 SeD_A1661 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 regulatory protein YP_002215473.1 1603355 R 439851 CDS YP_002215474.1 198244124 1604506..1605351 1 NC_011205.1 hypothetical protein 1605351 439851001770 SeD_A1662 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215474.1 1604506 D 439851 CDS YP_002215475.1 198245457 1605426..1607408 1 NC_011205.1 hypothetical protein 1607408 439851001771 SeD_A1663 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215475.1 1605426 D 439851 CDS YP_002215476.1 198245103 1607435..1608259 1 NC_011205.1 hypothetical protein 1608259 439851001772 SeD_A1664 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215476.1 1607435 D 439851 CDS YP_002215477.1 198244410 1608397..1608915 1 NC_011205.1 thiol peroxidase 1608915 439851001773 SeD_A1665 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiol peroxidase YP_002215477.1 1608397 D 439851 CDS YP_002215478.1 198243644 complement(1609022..1609360) 1 NC_011205.1 hypothetical protein 1609360 439851001774 SeD_A1666 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215478.1 1609022 R 439851 CDS YP_002215479.1 198242505 complement(1609388..1610074) 1 NC_011205.1 identified by match to protein family HMM PF03483; B3/4 domain-containing protein 1610074 439851001775 SeD_A1667 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 B3/4 domain-containing protein YP_002215479.1 1609388 R 439851 CDS YP_002215480.1 198246100 1610118..1610720 1 NC_011205.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883; Cro/CI family transcriptional regulator 1610720 439851001776 SeD_A1668 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Cro/CI family transcriptional regulator YP_002215480.1 1610118 D 439851 CDS YP_002215481.1 198245638 1610717..1610845 1 NC_011205.1 identified by glimmer; hypothetical protein 1610845 439851001777 SeD_A1669 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215481.1 1610717 D 439851 CDS YP_002215482.1 198246129 complement(1610806..1611837) 1 NC_011205.1 identified by match to protein family HMM PF00924; MscS family inner membrane protein YnaI 1611837 439851001778 SeD_A1670 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 MscS family inner membrane protein YnaI YP_002215482.1 1610806 R 439851 CDS YP_002215483.1 198244500 1612076..1612330 1 NC_011205.1 inner membrane protein 1612330 439851001779 SeD_A1671 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002215483.1 1612076 D 439851 CDS YP_002215484.1 198243757 complement(1612385..1613332) 1 NC_011205.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 1613332 uspE 439851001780 uspE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 universal stress protein UspE YP_002215484.1 1612385 R 439851 CDS YP_002215485.1 198242744 complement(1613483..1614235) 1 NC_011205.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 1614235 fnr 439851001781 fnr Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fumarate/nitrate reduction transcriptional regulator YP_002215485.1 1613483 R 439851 CDS YP_002215486.1 198242298 complement(1614431..1614946) 1 NC_011205.1 identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589; O-6-alkylguanine-DNA:cysteine-protein methyltransferase 1614946 439851001782 SeD_A1674 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 O-6-alkylguanine-DNA:cysteine-protein methyltransferase YP_002215486.1 1614431 R 439851 CDS YP_002215487.1 198245412 1615204..1615767 1 NC_011205.1 identified by match to protein family HMM PF01713; Smr protein/MutS2 1615767 439851001783 SeD_A1675 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Smr protein/MutS2 YP_002215487.1 1615204 D 439851 CDS YP_002215488.1 198244618 1616006..1616167 1 NC_011205.1 hypothetical protein 1616167 439851001784 SeD_A1676 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215488.1 1616006 D 439851 CDS YP_002215489.1 198243742 1616178..1617332 1 NC_011205.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein I 1617332 439851001785 SeD_A1677 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methyl-accepting chemotaxis protein I YP_002215489.1 1616178 D 439851 CDS YP_002215490.1 198243247 1617478..1618461 1 NC_011205.1 identified by match to protein family HMM PF01544; zinc transporter 1618461 zntB 439851001786 zntB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 zinc transporter YP_002215490.1 1617478 D 439851 CDS YP_002215491.1 198243415 1618946..1620319 1 NC_011205.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 1620319 439851001788 SeD_A1680 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent RNA helicase DbpA YP_002215491.1 1618946 D 439851 CDS YP_002215492.1 198242873 complement(1620363..1621298) 1 NC_011205.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1621298 439851001789 SeD_A1681 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 C32 tRNA thiolase YP_002215492.1 1620363 R 439851 CDS YP_002215493.1 198242226 complement(1621350..1621490) 1 NC_011205.1 Rac prophage; integrase 1621490 439851001790 SeD_A1682 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Rac prophage; integrase YP_002215493.1 1621350 R 439851 CDS YP_002215494.1 198245702 1621509..1621661 1 NC_011205.1 identified by glimmer; hypothetical protein 1621661 439851001791 SeD_A1683 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215494.1 1621509 D 439851 CDS YP_002215495.1 198241892 1621654..1621992 1 NC_011205.1 identified by match to protein family HMM PF00893; multidrug transporter EmrE 1621992 439851001792 SeD_A1684 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multidrug transporter EmrE YP_002215495.1 1621654 D 439851 CDS YP_002215496.1 198245897 complement(1622042..1622476) 1 NC_011205.1 identified by match to protein family HMM PF00582; universal stress protein F 1622476 439851001793 SeD_A1685 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 universal stress protein F YP_002215496.1 1622042 R 439851 CDS YP_002215497.1 198245539 complement(1622958..1626482) 1 NC_011205.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176; pyruvate:ferredoxin (flavodoxin) oxidoreductase 1626482 nifJ 439851001795 nifJ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pyruvate:ferredoxin (flavodoxin) oxidoreductase YP_002215497.1 1622958 R 439851 CDS YP_002215498.1 198243777 1626588..1626719 1 NC_011205.1 hypothetical protein 1626719 439851001796 SeD_A1689 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215498.1 1626588 D 439851 CDS YP_002215499.1 198243280 1626758..1627024 1 NC_011205.1 hypothetical protein 1627024 439851001797 SeD_A1690 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215499.1 1626758 D 439851 CDS YP_002215500.1 198242754 complement(1627068..1627478) 1 NC_011205.1 identified by match to protein family HMM PF03724; heat-inducible protein 1627478 439851001798 SeD_A1691 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 heat-inducible protein YP_002215500.1 1627068 R 439851 CDS YP_002215501.1 198242258 complement(1627589..1628578) 1 NC_011205.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-lactate dehydrogenase 1628578 439851001799 SeD_A1692 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-lactate dehydrogenase YP_002215501.1 1627589 R 439851 CDS YP_002215502.1 198245893 1628818..1631454 1 NC_011205.1 hypothetical protein 1631454 439851001800 SeD_A1693 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215502.1 1628818 D 439851 CDS YP_002215503.1 198246084 1631454..1631645 1 NC_011205.1 hypothetical protein 1631645 439851001801 SeD_A1694 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215503.1 1631454 D 439851 CDS YP_002215504.1 198243131 1631653..1631976 1 NC_011205.1 identified by match to protein family HMM PF07027; hypothetical protein 1631976 439851001802 SeD_A1695 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215504.1 1631653 D 439851 CDS YP_002215505.1 198245254 1632119..1632568 1 NC_011205.1 identified by match to protein family HMM PF04828; glutathione-dependent formaldehyde-activating, GFA 1632568 439851001803 SeD_A1696 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione-dependent formaldehyde-activating, GFA YP_002215505.1 1632119 D 439851 CDS YP_002215506.1 198243536 complement(1632565..1633170) 1 NC_011205.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 1633170 439851001804 SeD_A1697 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 azoreductase YP_002215506.1 1632565 R 439851 CDS YP_002215507.1 198245776 1633353..1637273 1 NC_011205.1 involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA 1637273 hrpA 439851001805 hrpA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent RNA helicase HrpA YP_002215507.1 1633353 D 439851 CDS YP_002215508.1 198242299 1637337..1638137 1 NC_011205.1 identified by match to protein family HMM PF02698; hypothetical protein 1638137 439851001806 SeD_A1699 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215508.1 1637337 D 439851 CDS YP_002215509.1 198242632 1638254..1638784 1 NC_011205.1 B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm; cytochrome b561 1638784 439851001807 SeD_A1700 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome b561 YP_002215509.1 1638254 D 439851 CDS YP_002215510.1 198243302 complement(1639055..1639717) 1 NC_011205.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase type 12 1639717 439851001809 SeD_A1702 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methyltransferase type 12 YP_002215510.1 1639055 R 439851 CDS YP_002215511.1 198243075 complement(1640181..1641731) 1 NC_011205.1 inner membrane protein 1641731 439851001810 SeD_A1703 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002215511.1 1640181 R 439851 CDS YP_002215512.1 198243706 complement(1641868..1642548) 1 NC_011205.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; ABC transporter membrane component 1642548 439851001811 SeD_A1704 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter membrane component YP_002215512.1 1641868 R 439851 CDS YP_002215513.1 198244296 complement(1642545..1643276) 1 NC_011205.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1643276 439851001812 SeD_A1705 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter ATP-binding protein YP_002215513.1 1642545 R 439851 CDS YP_002215514.1 198244904 complement(1643301..1643948) 1 NC_011205.1 ABC transporter permease 1643948 439851001813 SeD_A1706 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter permease YP_002215514.1 1643301 R 439851 CDS YP_002215515.1 198245654 1645623..1645967 1 NC_011205.1 identified by match to protein family HMM PF06961; cyanate transport 1645967 439851001816 SeD_A1709 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cyanate transport YP_002215515.1 1645623 D 439851 CDS YP_002215516.1 198246164 complement(1646088..1647314) 1 NC_011205.1 secreted effector protein 1647314 439851001817 SeD_A1710 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secreted effector protein YP_002215516.1 1646088 R 439851 CDS YP_002215517.1 198245671 complement(1648445..1648600) 1 NC_011205.1 identified by glimmer; hypothetical protein 1648600 439851001819 SeD_A1712 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215517.1 1648445 R 439851 CDS YP_002215518.1 198241844 1648620..1648745 1 NC_011205.1 identified by glimmer; hypothetical protein 1648745 439851001820 SeD_A1713 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215518.1 1648620 D 439851 CDS YP_002215519.1 198243643 1649508..1649783 1 NC_011205.1 identified by match to protein family HMM PF02583; hypothetical protein 1649783 439851001821 SeD_A1714 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215519.1 1649508 D 439851 CDS YP_002215520.1 198243779 1649815..1650933 1 NC_011205.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02818; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 1650933 439851001822 SeD_A1715 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase YP_002215520.1 1649815 D 439851 CDS YP_002215521.1 198244749 1651102..1652727 1 NC_011205.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein III 1652727 439851001823 SeD_A1716 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methyl-accepting chemotaxis protein III YP_002215521.1 1651102 D 439851 CDS YP_002215522.1 198245256 complement(1652788..1653711) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 1653711 439851001824 SeD_A1717 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR substrate binding domain-containing protein YP_002215522.1 1652788 R 439851 CDS YP_002215523.1 198242447 1654004..1655347 1 NC_011205.1 identified by match to protein family HMM PF07063; hypothetical protein 1655347 439851001825 SeD_A1718 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215523.1 1654004 D 439851 CDS YP_002215524.1 198243156 1655396..1656904 1 NC_011205.1 identified by match to protein family HMM PF00135; carboxylesterase, type B 1656904 439851001826 SeD_A1719 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 carboxylesterase, type B YP_002215524.1 1655396 D 439851 CDS YP_002215525.1 198246242 1657160..1658779 1 NC_011205.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 1658779 mdoD 439851001827 mdoD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucan biosynthesis protein D YP_002215525.1 1657160 D 439851 CDS YP_002215526.1 198241860 1658984..1659550 1 NC_011205.1 identified by match to protein family HMM PF04264; hypothetical protein 1659550 439851001828 SeD_A1721 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215526.1 1658984 D 439851 CDS YP_002215527.1 198244860 1659562..1660698 1 NC_011205.1 identified by match to protein family HMM PF01070; L-lactate oxidase 1660698 439851001829 SeD_A1722 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-lactate oxidase YP_002215527.1 1659562 D 439851 CDS YP_002215528.1 198245627 complement(1660745..1661182) 1 NC_011205.1 identified by match to protein family HMM PF00583; aminoglycoside 6'-N-acetyltransferase Iz 1661182 439851001830 SeD_A1723 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aminoglycoside 6'-N-acetyltransferase Iz YP_002215528.1 1660745 R 439851 CDS YP_002215529.1 198243136 complement(1661182..1661979) 1 NC_011205.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; regulatory protein 1661979 439851001831 SeD_A1724 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 regulatory protein YP_002215529.1 1661182 R 439851 CDS YP_002215530.1 198243651 complement(1661989..1662621) 1 NC_011205.1 identified by match to protein family HMM PF00834; epimerase 1662621 439851001832 SeD_A1725 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 epimerase YP_002215530.1 1661989 R 439851 CDS YP_002215531.1 198242304 complement(1662633..1663070) 1 NC_011205.1 identified by match to protein family HMM PF00359; PTS system phosphoenolpyruvate-dependent sugar transporter subunit EIIA 1663070 439851001833 SeD_A1726 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system phosphoenolpyruvate-dependent sugar transporter subunit EIIA YP_002215531.1 1662633 R 439851 CDS YP_002215532.1 198246173 complement(1663202..1664008) 1 NC_011205.1 identified by match to protein family HMM PF03437; match to protein family HMM TIGR00259; hypothetical protein 1664008 439851001834 SeD_A1727 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215532.1 1663202 R 439851 CDS YP_002215533.1 198245640 complement(1664022..1665335) 1 NC_011205.1 identified by match to protein family HMM PF03611; match to protein family HMM TIGR00827; PTS system transporter subunit IIC 1665335 439851001835 SeD_A1728 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system transporter subunit IIC YP_002215533.1 1664022 R 439851 CDS YP_002215534.1 198242321 complement(1665346..1665627) 1 NC_011205.1 identified by match to protein family HMM PF02302; PTS system lactose/cellobiose-specific transporter subunit IIB 1665627 439851001836 SeD_A1729 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system lactose/cellobiose-specific transporter subunit IIB YP_002215534.1 1665346 R 439851 CDS YP_002215535.1 198241807 complement(1665624..1666742) 1 NC_011205.1 identified by match to protein family HMM PF01546; match to protein family HMM PF05343; hypothetical protein 1666742 439851001837 SeD_A1730 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215535.1 1665624 R 439851 CDS YP_002215536.1 198243096 1666959..1667498 1 NC_011205.1 identified by match to protein family HMM PF00583; ribosomal-protein-L7/L12-serine acetyltransferase 1667498 439851001838 SeD_A1731 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribosomal-protein-L7/L12-serine acetyltransferase YP_002215536.1 1666959 D 439851 CDS YP_002215537.1 198243612 complement(1667495..1668475) 1 NC_011205.1 hypothetical protein 1668475 439851001839 SeD_A1732 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215537.1 1667495 R 439851 CDS YP_002215538.1 198244312 1668582..1669595 1 NC_011205.1 identified by match to protein family HMM PF03595; match to protein family HMM TIGR00816; potassium-tellurite ethidium and proflavin transporter 1669595 439851001840 SeD_A1733 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 potassium-tellurite ethidium and proflavin transporter YP_002215538.1 1668582 D 439851 CDS YP_002215539.1 198246192 1669582..1670178 1 NC_011205.1 with TehA confers resistance to tellurite; tellurite resistance protein TehB 1670178 tehB 439851001841 tehB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tellurite resistance protein TehB YP_002215539.1 1669582 D 439851 CDS YP_002215540.1 198245599 1670334..1671002 1 NC_011205.1 lipoprotein 1671002 439851001842 SeD_A1735 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein YP_002215540.1 1670334 D 439851 CDS YP_002215541.1 198245199 complement(1671056..1672234) 1 NC_011205.1 identified by match to protein family HMM PF00860; match to protein family HMM PF03594; match to protein family HMM TIGR00843; benzoate transporter 1672234 439851001843 SeD_A1736 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 benzoate transporter YP_002215541.1 1671056 R 439851 CDS YP_002215542.1 198244633 1672305..1672862 1 NC_011205.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883; XRE family transcriptional regulator 1672862 439851001844 SeD_A1737 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 XRE family transcriptional regulator YP_002215542.1 1672305 D 439851 CDS YP_002215543.1 198244510 1672941..1674905 1 NC_011205.1 identified by match to protein family HMM PF01136; peptidase, U32 family 1674905 439851001845 SeD_A1738 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidase, U32 family YP_002215543.1 1672941 D 439851 CDS YP_002215544.1 198242228 complement(1674906..1675136) 1 NC_011205.1 hypothetical protein 1675136 439851001846 SeD_A1739 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215544.1 1674906 R 439851 CDS YP_002215545.1 198242920 complement(1675410..1676360) 1 NC_011205.1 translocated by the type III secretion system SPI-2; localizes to Sifs in infected cells and specifically to Salmonella-containing vacuoles; secreted effector protein 1676360 sifB 439851001847 sifB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secreted effector protein YP_002215545.1 1675410 R 439851 CDS YP_002215546.1 198242406 1676889..1677287 1 NC_011205.1 hypothetical protein 1677287 439851001848 SeD_A1741 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215546.1 1676889 D 439851 CDS YP_002215547.1 198242003 1677809..1678579 1 NC_011205.1 identified by match to protein family HMM PF01427; periplasmic dipeptidase 1678579 439851001849 SeD_A1742 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 periplasmic dipeptidase YP_002215547.1 1677809 D 439851 CDS YP_002215548.1 198244240 1678715..1680139 1 NC_011205.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; aminotransferase 1680139 439851001850 SeD_A1743 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aminotransferase YP_002215548.1 1678715 D 439851 CDS YP_002215549.1 198246037 1680254..1681699 1 NC_011205.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 1681699 439851001851 SeD_A1744 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gamma-aminobutyraldehyde dehydrogenase YP_002215549.1 1680254 D 439851 CDS YP_002215550.1 198243299 1682098..1682271 1 NC_011205.1 inner membrane protein 1682271 439851001852 SeD_A1745 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002215550.1 1682098 D 439851 CDS YP_002215551.1 198245382 complement(1682316..1684460) 1 NC_011205.1 virulence effector protein 1684460 439851001853 SeD_A1746 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 virulence effector protein YP_002215551.1 1682316 R 439851 CDS YP_002215552.1 198242392 complement(1684457..1687438) 1 NC_011205.1 identified by match to protein family HMM PF07520; virulence protein SrfB 1687438 439851001854 SeD_A1747 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 virulence protein SrfB YP_002215552.1 1684457 R 439851 CDS YP_002215553.1 198245312 complement(1687443..1688771) 1 NC_011205.1 ssrAB activated gene 1688771 439851001855 SeD_A1748 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ssrAB activated gene YP_002215553.1 1687443 R 439851 CDS YP_002215554.1 198242139 1688995..1689228 1 NC_011205.1 hypothetical protein 1689228 439851001856 SeD_A1749 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215554.1 1688995 D 439851 CDS YP_002215555.1 198242653 complement(1689233..1689682) 1 NC_011205.1 identified by match to protein family HMM PF04657; hypothetical protein 1689682 439851001857 SeD_A1750 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215555.1 1689233 R 439851 CDS YP_002215556.1 198245010 complement(1689682..1690197) 1 NC_011205.1 identified by match to protein family HMM PF00583; phosphinothricin acetyltransferase 1690197 yncA 439851001858 yncA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphinothricin acetyltransferase YP_002215556.1 1689682 R 439851 CDS YP_002215557.1 198243259 1690409..1691446 1 NC_011205.1 identified by match to protein family HMM PF00107; NADP-dependent oxidoreductase yncb 1691446 439851001859 SeD_A1752 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NADP-dependent oxidoreductase yncb YP_002215557.1 1690409 D 439851 CDS YP_002215558.1 198245818 1691780..1692445 1 NC_011205.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; DNA-binding transcriptional regulator 1692445 439851001860 SeD_A1753 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator YP_002215558.1 1691780 D 439851 CDS YP_002215559.1 198244055 complement(1692501..1694666) 1 NC_011205.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor YncD 1694666 439851001861 SeD_A1754 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 TonB-dependent receptor YncD YP_002215559.1 1692501 R 439851 CDS YP_002215560.1 198241939 1694885..1695946 1 NC_011205.1 hypothetical protein 1695946 439851001862 SeD_A1755 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215560.1 1694885 D 439851 CDS YP_002215561.1 198243058 1696091..1696312 1 NC_011205.1 identified by match to protein family HMM PF06004; hypothetical protein 1696312 439851001863 SeD_A1756 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215561.1 1696091 D 439851 CDS YP_002215562.1 198244946 complement(1696389..1697882) 1 NC_011205.1 identified by match to protein family HMM PF00324; L-asparagine permease 1697882 439851001864 SeD_A1757 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-asparagine permease YP_002215562.1 1696389 R 439851 CDS YP_002215563.1 198244357 1698036..1698173 1 NC_011205.1 identified by glimmer; hypothetical protein 1698173 439851001865 SeD_A1758 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215563.1 1698036 D 439851 CDS YP_002215564.1 198246239 1698395..1699027 1 NC_011205.1 hypothetical protein 1699027 439851001866 SeD_A1759 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215564.1 1698395 D 439851 CDS YP_002215565.1 198245879 1699310..1700155 1 NC_011205.1 identified by match to protein family HMM PF00797; N-acetyltransferase family protein 1700155 439851001867 SeD_A1760 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N-acetyltransferase family protein YP_002215565.1 1699310 D 439851 CDS YP_002215566.1 198242825 complement(1700191..1701084) 1 NC_011205.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; hypothetical protein 1701084 439851001868 SeD_A1761 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215566.1 1700191 R 439851 CDS YP_002215567.1 198242325 complement(1701190..1701870) 1 NC_011205.1 identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase 2 gamma subunit 1701870 narV 439851001869 narV Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 respiratory nitrate reductase 2 gamma subunit YP_002215567.1 1701190 R 439851 CDS YP_002215568.1 198241989 complement(1701867..1702562) 1 NC_011205.1 identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684; nitrate reductase molybdenum cofactor assembly chaperone 2 1702562 narW 439851001870 narW Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitrate reductase molybdenum cofactor assembly chaperone 2 YP_002215568.1 1701867 R 439851 CDS YP_002215569.1 198245547 complement(1702562..1704106) 1 NC_011205.1 identified by match to protein family HMM TIGR01660; nitrate reductase 2 subunit beta 1704106 narY 439851001871 narY Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitrate reductase 2 subunit beta YP_002215569.1 1702562 R 439851 CDS YP_002215570.1 198243063 complement(1704103..1707843) 1 NC_011205.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; nitrate reductase subunit alpha 1707843 439851001872 SeD_A1765 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitrate reductase subunit alpha YP_002215570.1 1704103 R 439851 CDS YP_002215571.1 198245323 complement(1707935..1709335) 1 NC_011205.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886; nitrite extrusion protein 2 1709335 439851001873 SeD_A1766 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitrite extrusion protein 2 YP_002215571.1 1707935 R 439851 CDS YP_002215572.1 198242987 complement(1709538..1710116) 1 NC_011205.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1710116 439851001874 SeD_A1767 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 TetR family transcriptional regulator YP_002215572.1 1709538 R 439851 CDS YP_002215573.1 198243458 1710234..1711721 1 NC_011205.1 identified by match to protein family HMM PF07690; methyl viologen resistance protein SmvA 1711721 439851001875 SeD_A1768 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methyl viologen resistance protein SmvA YP_002215573.1 1710234 D 439851 CDS YP_002215574.1 198242018 complement(1711746..1712186) 1 NC_011205.1 identified by match to protein family HMM PF04828; glutathione-dependent formaldehyde-activating, GFA 1712186 439851001876 SeD_A1769 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione-dependent formaldehyde-activating, GFA YP_002215574.1 1711746 R 439851 CDS YP_002215575.1 198242507 complement(1712270..1713358) 1 NC_011205.1 identified by match to protein family HMM PF00267; outer membrane porin protein LC 1713358 439851001877 SeD_A1770 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane porin protein LC YP_002215575.1 1712270 R 439851 CDS YP_002215576.1 198245933 complement(1713881..1714804) 1 NC_011205.1 identified by match to protein family HMM PF00892; hypothetical protein 1714804 439851001878 SeD_A1771 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215576.1 1713881 R 439851 CDS YP_002215577.1 198245597 1718101..1718985 1 NC_011205.1 identified by match to protein family HMM PF00037; match to protein family HMM PF09163; match to protein family HMM TIGR01582; formate dehydrogenase, nitrate-inducible, iron-sulfur subunit 1718985 fdnH 439851001880 fdnH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate dehydrogenase, nitrate-inducible, iron-sulfur subunit YP_002215577.1 1718101 D 439851 CDS YP_002215578.1 198245467 1718978..1719634 1 NC_011205.1 nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase; formate dehydrogenase-N subunit gamma 1719634 439851001881 SeD_A1775 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate dehydrogenase-N subunit gamma YP_002215578.1 1718978 D 439851 CDS YP_002215579.1 198246102 complement(1719725..1720735) 1 NC_011205.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 1720735 439851001882 SeD_A1776 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 alcohol dehydrogenase YP_002215579.1 1719725 R 439851 CDS YP_002215580.1 198244343 complement(1721017..1722714) 1 NC_011205.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1722714 439851001883 SeD_A1777 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 malate dehydrogenase YP_002215580.1 1721017 R 439851 CDS YP_002215581.1 198244822 complement(1722891..1723034) 1 NC_011205.1 protein D; stationary-phase-induced ribosome-associated; in Escherichia coli this protein becomes associated with the ribosome; expression increases during stationary phase; 30S ribosomal subunit S22 1723034 rpsV 439851001884 rpsV Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal subunit S22 YP_002215581.1 1722891 R 439851 CDS YP_002215582.1 198243080 complement(1723129..1723344) 1 NC_011205.1 biofilm-dependent modulation protein 1723344 439851001885 SeD_A1779 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 biofilm-dependent modulation protein YP_002215582.1 1723129 R 439851 CDS YP_002215583.1 198243578 1723857..1724288 1 NC_011205.1 identified by match to protein family HMM PF02566; peroxiredoxin OsmC 1724288 439851001886 SeD_A1780 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peroxiredoxin OsmC YP_002215583.1 1723857 D 439851 CDS YP_002215584.1 198241810 1724638..1724967 1 NC_011205.1 acid-resistance protein 1724967 hdeB 439851001887 hdeB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acid-resistance protein YP_002215584.1 1724638 D 439851 CDS YP_002215585.1 198243376 1725110..1725895 1 NC_011205.1 identified by match to protein family HMM PF06884; hypothetical protein 1725895 439851001888 SeD_A1782 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215585.1 1725110 D 439851 CDS YP_002215586.1 198244502 1726024..1727808 1 NC_011205.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402; malto-oligosyltrehalose trehalohydrolase 1727808 treZ 439851001889 treZ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 malto-oligosyltrehalose trehalohydrolase YP_002215586.1 1726024 D 439851 CDS YP_002215587.1 198246001 1727805..1730333 1 NC_011205.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02401; malto-oligosyltrehalose synthase 1730333 treY 439851001890 treY Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 malto-oligosyltrehalose synthase YP_002215587.1 1727805 D 439851 CDS YP_002215588.1 198243244 1730390..1732465 1 NC_011205.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100; glycogen debranching enzyme GlgX 1732465 glgX 439851001891 glgX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycogen debranching enzyme GlgX YP_002215588.1 1730390 D 439851 CDS YP_002215589.1 198244409 complement(1732578..1733780) 1 NC_011205.1 identified by match to protein family HMM PF00155; aminotransferase 1733780 439851001892 SeD_A1786 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aminotransferase YP_002215589.1 1732578 R 439851 CDS YP_002215590.1 198244867 complement(1733793..1735244) 1 NC_011205.1 identified by match to protein family HMM PF03553; match to protein family HMM TIGR00931; Na+/H+ antiporter NhaC 1735244 nhaC 439851001893 nhaC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Na+/H+ antiporter NhaC YP_002215590.1 1733793 R 439851 CDS YP_002215591.1 198244369 complement(1735388..1736395) 1 NC_011205.1 identified by match to protein family HMM PF00532; HTH-type transcriptional regulator GalR 1736395 439851001894 SeD_A1788 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 HTH-type transcriptional regulator GalR YP_002215591.1 1735388 R 439851 CDS YP_002215592.1 198246186 1736626..1736907 1 NC_011205.1 identified by glimmer; hypothetical protein 1736907 439851001895 SeD_A1789 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215592.1 1736626 D 439851 CDS YP_002215593.1 198245655 complement(1737196..1737384) 1 NC_011205.1 hypothetical protein 1737384 439851001896 SeD_A1790 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215593.1 1737196 R 439851 CDS YP_002215594.1 198242344 1737549..1737848 1 NC_011205.1 major facilitator superfamily MFS_1 1737848 439851001897 SeD_A1791 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 major facilitator superfamily MFS_1 YP_002215594.1 1737549 D 439851 CDS YP_002215595.1 198241859 1737984..1739474 1 NC_011205.1 PqaA protein 1739474 pqaA 439851001898 pqaA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PqaA protein YP_002215595.1 1737984 D 439851 CDS YP_002215596.1 198244363 1739651..1740937 1 NC_011205.1 identified by match to protein family HMM PF07690; membrane transport protein 1740937 439851001899 SeD_A1793 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 membrane transport protein YP_002215596.1 1739651 D 439851 CDS YP_002215597.1 198243160 1740912..1741937 1 NC_011205.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; zinc-type alcohol dehydrogenase 1741937 439851001900 SeD_A1794 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 zinc-type alcohol dehydrogenase YP_002215597.1 1740912 D 439851 CDS YP_002215598.1 198242243 complement(1741996..1742667) 1 NC_011205.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; regulatory protein 1742667 439851001901 SeD_A1795 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 regulatory protein YP_002215598.1 1741996 R 439851 CDS YP_002215599.1 198242736 complement(1742833..1743924) 1 NC_011205.1 identified by match to protein family HMM PF02275; choloylglycine hydrolase 1743924 439851001902 SeD_A1796 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 choloylglycine hydrolase YP_002215599.1 1742833 R 439851 CDS YP_002215600.1 198245788 1744352..1745455 1 NC_011205.1 identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; uptake hydrogenase small subunit 1745455 439851001903 SeD_A1797 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 uptake hydrogenase small subunit YP_002215600.1 1744352 D 439851 CDS YP_002215601.1 198244043 1745458..1747260 1 NC_011205.1 identified by match to protein family HMM PF00374; [Ni/Fe] hydrogenase, large subunit 1747260 439851001904 SeD_A1798 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 [Ni/Fe] hydrogenase, large subunit YP_002215601.1 1745458 D 439851 CDS YP_002215602.1 198244291 1747211..1747954 1 NC_011205.1 identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125; Ni/Fe-hydrogenase, B-type cytochrome subunit 1747954 cybH 439851001905 cybH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Ni/Fe-hydrogenase, B-type cytochrome subunit YP_002215602.1 1747211 D 439851 CDS YP_002215603.1 198244786 1747960..1748568 1 NC_011205.1 identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140; match to protein family HMM TIGR00141; hydrogenase expression/formation protein 1748568 hybD 439851001906 hybD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase expression/formation protein YP_002215603.1 1747960 D 439851 CDS YP_002215604.1 198243250 1748568..1748867 1 NC_011205.1 identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF 1748867 hypC 439851001907 hypC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase assembly chaperone HypC/HupF YP_002215604.1 1748568 D 439851 CDS YP_002215605.1 198243745 1748864..1749274 1 NC_011205.1 identified by match to protein family HMM PF07449; hydrogenase-1 operon protein HyaE2 1749274 439851001908 SeD_A1802 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase-1 operon protein HyaE2 YP_002215605.1 1748864 D 439851 CDS YP_002215606.1 198245218 1749292..1750353 1 NC_011205.1 identified by match to protein family HMM PF00301; match to protein family HMM PF04809; hydrogenase-1 operon protein HyaF2 1750353 439851001909 SeD_A1803 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase-1 operon protein HyaF2 YP_002215606.1 1749292 D 439851 CDS YP_002215607.1 198245957 1750341..1751228 1 NC_011205.1 dehydrogenase protein 1751228 439851001910 SeD_A1804 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dehydrogenase protein YP_002215607.1 1750341 D 439851 CDS YP_002215608.1 198244041 1751241..1751582 1 NC_011205.1 identified by match to protein family HMM PF01155; match to protein family HMM TIGR00100; hydrogenase nickel insertion protein HypA 1751582 hypA 439851001911 hypA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase nickel insertion protein HypA YP_002215608.1 1751241 D 439851 CDS YP_002215609.1 198244950 complement(1751723..1752841) 1 NC_011205.1 identified by match to protein family HMM PF00267; outer membrane protein N 1752841 439851001912 SeD_A1806 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein N YP_002215609.1 1751723 R 439851 CDS YP_002215610.1 198242512 1753573..1754100 1 NC_011205.1 outer membrane protein 1754100 439851001913 SeD_A1807 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein YP_002215610.1 1753573 D 439851 CDS YP_002215611.1 198245738 complement(1755324..1755683) 1 NC_011205.1 hypothetical protein 1755683 439851001915 SeD_A1809 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215611.1 1755324 R 439851 CDS YP_002215612.1 198241871 complement(1755683..1756609) 1 NC_011205.1 catalyzes the formation of glutamate from glutamine; glutaminase 1756609 439851001916 SeD_A1810 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutaminase YP_002215612.1 1755683 R 439851 CDS YP_002215613.1 198245591 complement(1756682..1758070) 1 NC_011205.1 in Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase; succinate semialdehyde dehydrogenase 1758070 439851001917 SeD_A1811 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 succinate semialdehyde dehydrogenase YP_002215613.1 1756682 R 439851 CDS YP_002215614.1 198246232 1758173..1759045 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 1759045 439851001918 SeD_A1812 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR substrate binding domain-containing protein YP_002215614.1 1758173 D 439851 CDS YP_002215615.1 198244324 1759161..1760351 1 NC_011205.1 identified by match to protein family HMM PF07690; sugar efflux transporter 1760351 439851001919 SeD_A1813 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sugar efflux transporter YP_002215615.1 1759161 D 439851 CDS YP_002215616.1 198244957 complement(1760398..1761063) 1 NC_011205.1 protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function; multiple drug resistance protein MarC 1761063 439851001920 SeD_A1814 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multiple drug resistance protein MarC YP_002215616.1 1760398 R 439851 CDS YP_002215617.1 198242470 1761322..1761756 1 NC_011205.1 Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes; DNA-binding transcriptional repressor MarR 1761756 marR 439851001921 marR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional repressor MarR YP_002215617.1 1761322 D 439851 CDS YP_002215618.1 198242429 1761776..1762159 1 NC_011205.1 transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF; DNA-binding transcriptional activator MarA 1762159 439851001922 SeD_A1816 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional activator MarA YP_002215618.1 1761776 D 439851 CDS YP_002215619.1 198241793 1762188..1762403 1 NC_011205.1 hypothetical protein 1762403 439851001923 SeD_A1817 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215619.1 1762188 D 439851 CDS YP_002215620.1 198242201 complement(1762522..1763424) 1 NC_011205.1 identified by match to protein family HMM PF00892; O-acetylserine/cysteine export protein 1763424 439851001924 SeD_A1818 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 O-acetylserine/cysteine export protein YP_002215620.1 1762522 R 439851 CDS YP_002215621.1 198244257 1765059..1765181 1 NC_011205.1 hypothetical protein 1765181 439851001927 SeD_A1821 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215621.1 1765059 D 439851 CDS YP_002215622.1 198245851 complement(1765529..1765921) 1 NC_011205.1 identified by match to protein family HMM PF04076; match to protein family HMM TIGR00156; hypothetical protein 1765921 439851001928 SeD_A1822 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215622.1 1765529 R 439851 CDS YP_002215623.1 198242488 1766349..1766876 1 NC_011205.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence damage-inducible protein A 1766876 439851001929 SeD_A1823 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 competence damage-inducible protein A YP_002215623.1 1766349 D 439851 CDS YP_002215624.1 198241881 complement(1766996..1767178) 1 NC_011205.1 hypothetical protein 1767178 439851001930 SeD_A1824 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215624.1 1766996 R 439851 CDS YP_002215625.1 198243512 complement(1767330..1768412) 1 NC_011205.1 peptidyl-dipeptidase dcp 1768412 439851001931 SeD_A1825 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidyl-dipeptidase dcp YP_002215625.1 1767330 R 439851 CDS YP_002215626.1 198245020 1768551..1769297 1 NC_011205.1 NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine; 3-hydroxy acid dehydrogenase 1769297 439851001932 SeD_A1826 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-hydroxy acid dehydrogenase YP_002215626.1 1768551 D 439851 CDS YP_002215627.1 198244570 1769427..1770113 1 NC_011205.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 1770113 439851001933 SeD_A1827 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GntR family transcriptional regulator YP_002215627.1 1769427 D 439851 CDS YP_002215628.1 198242729 1770294..1770497 1 NC_011205.1 hypothetical protein 1770497 439851001934 SeD_A1828 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215628.1 1770294 D 439851 CDS YP_002215629.1 198242241 complement(1770564..1772030) 1 NC_011205.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125; D-mannonate oxidoreductase 1772030 439851001935 SeD_A1830 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-mannonate oxidoreductase YP_002215629.1 1770564 R 439851 CDS YP_002215630.1 198243809 1772006..1772119 1 NC_011205.1 identified by glimmer; hypothetical protein 1772119 439851001936 SeD_A1829 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215630.1 1772006 D 439851 CDS YP_002215631.1 198243254 complement(1772174..1773514) 1 NC_011205.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; inner membrane metabolite transport protein YdfJ 1773514 439851001937 SeD_A1831 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane metabolite transport protein YdfJ YP_002215631.1 1772174 R 439851 CDS YP_002215632.1 198244222 complement(1774637..1775851) 1 NC_011205.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; starvation sensing protein RspA 1775851 439851001940 SeD_A1834 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 starvation sensing protein RspA YP_002215632.1 1774637 R 439851 CDS YP_002215633.1 198245812 complement(1775973..1776299) 1 NC_011205.1 identified by match to protein family HMM PF02694; hypothetical protein 1776299 439851001941 SeD_A1835 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215633.1 1775973 R 439851 CDS YP_002215634.1 198245561 1776452..1776793 1 NC_011205.1 identified by match to protein family HMM PF06932; hypothetical protein 1776793 439851001942 SeD_A1836 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215634.1 1776452 D 439851 CDS YP_002215635.1 198245048 1776829..1777389 1 NC_011205.1 identified by match to protein family HMM PF00583; diamine N-acetyltransferase 1777389 speG 439851001943 speG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 diamine N-acetyltransferase YP_002215635.1 1776829 D 439851 CDS YP_002215636.1 198241883 complement(1777430..1778140) 1 NC_011205.1 identified by match to protein family HMM PF06788; hypothetical protein 1778140 439851001944 SeD_A1838 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215636.1 1777430 R 439851 CDS YP_002215637.1 198245920 1778247..1778552 1 NC_011205.1 identified by match to protein family HMM PF06649; outer membrane protein 1778552 439851001945 SeD_A1839 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein YP_002215637.1 1778247 D 439851 CDS YP_002215638.1 198243690 1778709..1781147 1 NC_011205.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase chain a 1781147 439851001946 SeD_A1840 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anaerobic dimethyl sulfoxide reductase chain a YP_002215638.1 1778709 D 439851 CDS YP_002215639.1 198243036 1781246..1783681 1 NC_011205.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase chain a 1783681 439851001947 SeD_A1841 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anaerobic dimethyl sulfoxide reductase chain a YP_002215639.1 1781246 D 439851 CDS YP_002215640.1 198244390 1783692..1784309 1 NC_011205.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; anaerobic dimethyl sulfoxide reductase, B subunit 1784309 dmsB_1 439851001948 dmsB_1 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anaerobic dimethyl sulfoxide reductase, B subunit YP_002215640.1 1783692 D 439851 CDS YP_002215641.1 198243803 1784311..1785168 1 NC_011205.1 identified by match to protein family HMM PF04976; dmso reductase anchor subunit 1785168 dmsC 439851001949 dmsC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dmso reductase anchor subunit YP_002215641.1 1784311 D 439851 CDS YP_002215642.1 198245085 1785211..1785825 1 NC_011205.1 binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane; twin-argninine leader-binding protein DmsD 1785825 439851001950 SeD_A1844 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 twin-argninine leader-binding protein DmsD YP_002215642.1 1785211 D 439851 CDS YP_002215643.1 198244063 1786130..1786840 1 NC_011205.1 identified by match to protein family HMM PF00528; binding-protein-dependent transport systems inner membrane component 1786840 439851001951 SeD_A1845 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 binding-protein-dependent transport systems inner membrane component YP_002215643.1 1786130 D 439851 CDS YP_002215644.1 198246216 1786869..1787771 1 NC_011205.1 identified by match to protein family HMM PF04069; substrate-binding region of ABC glycine betaine transport system 1787771 439851001952 SeD_A1846 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 substrate-binding region of ABC glycine betaine transport system YP_002215644.1 1786869 D 439851 CDS YP_002215645.1 198245532 1787781..1788428 1 NC_011205.1 identified by match to protein family HMM PF00528; binding-protein-dependent transport systems inner membrane component 1788428 439851001953 SeD_A1847 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 binding-protein-dependent transport systems inner membrane component YP_002215645.1 1787781 D 439851 CDS YP_002215646.1 198244912 1788428..1789576 1 NC_011205.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; choline transport ATP-binding protein opuBA 1789576 439851001954 SeD_A1848 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 choline transport ATP-binding protein opuBA YP_002215646.1 1788428 D 439851 CDS YP_002215647.1 198246211 1789748..1791001 1 NC_011205.1 identified by match to protein family HMM PF00654; voltage-gated ClC-type chloride channel ClcB 1791001 439851001955 SeD_A1849 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 voltage-gated ClC-type chloride channel ClcB YP_002215647.1 1789748 D 439851 CDS YP_002215648.1 198244304 complement(1790957..1791652) 1 NC_011205.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 1791652 bioD2 439851001956 bioD2 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dithiobiotin synthetase YP_002215648.1 1790957 R 439851 CDS YP_002215649.1 198245602 complement(1791778..1792998) 1 NC_011205.1 identified by match to protein family HMM PF00480; transcriptional regulator Mic 1792998 mic 439851001957 mic Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator Mic YP_002215649.1 1791778 R 439851 CDS YP_002215650.1 198242382 complement(1793126..1794025) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 1794025 439851001958 SeD_A1852 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR substrate binding domain-containing protein YP_002215650.1 1793126 R 439851 CDS YP_002215651.1 198241768 1794145..1795398 1 NC_011205.1 identified by match to protein family HMM PF07690; inner membrane transport protein YnfM 1795398 439851001959 SeD_A1853 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane transport protein YnfM YP_002215651.1 1794145 D 439851 CDS YP_002215652.1 198243674 1795793..1796041 1 NC_011205.1 required for growth and survival under moderately acid conditions; acid shock protein precursor 1796041 439851001960 SeD_A1854 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acid shock protein precursor YP_002215652.1 1795793 D 439851 CDS YP_002215653.1 198243062 1796091..1796210 1 NC_011205.1 identified by glimmer; hypothetical protein 1796210 439851001961 SeD_A1855 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215653.1 1796091 D 439851 CDS YP_002215654.1 198246128 1796310..1797131 1 NC_011205.1 identified by match to protein family HMM PF00089; peptidase S1 and S6 chymotrypsin/Hap 1797131 439851001962 SeD_A1856 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidase S1 and S6 chymotrypsin/Hap YP_002215654.1 1796310 D 439851 CDS YP_002215655.1 198244430 complement(1797171..1797500) 1 NC_011205.1 with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtI 1797500 439851001963 SeD_A1857 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multidrug efflux system protein MdtI YP_002215655.1 1797171 R 439851 CDS YP_002215656.1 198241742 complement(1797487..1797849) 1 NC_011205.1 with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtJ 1797849 439851001964 SeD_A1858 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multidrug efflux system protein MdtJ YP_002215656.1 1797487 R 439851 CDS YP_002215657.1 198242353 complement(1797961..1798098) 1 NC_011205.1 hypothetical protein 1798098 439851001965 SeD_A1859 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215657.1 1797961 R 439851 CDS YP_002215658.1 198243169 1798267..1799301 1 NC_011205.1 transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; transport protein 1799301 tqsA 439851001966 tqsA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transport protein YP_002215658.1 1798267 D 439851 CDS YP_002215659.1 198243640 complement(1799476..1800864) 1 NC_011205.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 1800864 pntB 439851001967 pntB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pyridine nucleotide transhydrogenase YP_002215659.1 1799476 R 439851 CDS YP_002215660.1 198244378 complement(1800875..1802404) 1 NC_011205.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 1802404 pntA 439851001968 pntA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NAD(P) transhydrogenase subunit alpha YP_002215660.1 1800875 R 439851 CDS YP_002215661.1 198244870 1802931..1803875 1 NC_011205.1 identified by match to protein family HMM PF07338; hypothetical protein 1803875 439851001969 SeD_A1863 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215661.1 1802931 D 439851 CDS YP_002215662.1 198242934 1806082..1806813 1 NC_011205.1 response regulator in two-component regulatory system with RstB; DNA-binding transcriptional regulator RstA 1806813 439851001972 SeD_A1867 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator RstA YP_002215662.1 1806082 D 439851 CDS YP_002215663.1 198245899 1806900..1807028 1 NC_011205.1 hypothetical protein 1807028 439851001973 SeD_A1868 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215663.1 1806900 D 439851 CDS YP_002215664.1 198243329 1807293..1808444 1 NC_011205.1 identified by match to protein family HMM PF00267; outer membrane protein N 1808444 439851001975 SeD_A1870 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein N YP_002215664.1 1807293 D 439851 CDS YP_002215665.1 198242385 1808603..1810303 1 NC_011205.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family protein 1810303 439851001976 SeD_A1871 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 amidohydrolase family protein YP_002215665.1 1808603 D 439851 CDS YP_002215666.1 198245106 1810414..1811715 1 NC_011205.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor protein RstB 1811715 439851001977 SeD_A1872 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sensor protein RstB YP_002215666.1 1810414 D 439851 CDS YP_002215667.1 198246062 1811791..1812720 1 NC_011205.1 binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein 1812720 tus 439851001978 tus Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA replication terminus site-binding protein YP_002215667.1 1811791 D 439851 CDS YP_002215668.1 198244445 complement(1812717..1814120) 1 NC_011205.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1814120 fumC 439851001979 fumC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fumarate hydratase YP_002215668.1 1812717 R 439851 CDS YP_002215669.1 198245417 complement(1814288..1815934) 1 NC_011205.1 identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723; fumarate hydratase class I, anaerobic 1815934 fumB 439851001980 fumB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fumarate hydratase class I, anaerobic YP_002215669.1 1814288 R 439851 CDS YP_002215670.1 198245756 1816134..1817309 1 NC_011205.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218; mannose-6-phosphate isomerase 1817309 manA 439851001981 manA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 mannose-6-phosphate isomerase YP_002215670.1 1816134 D 439851 CDS YP_002215671.1 198241766 1817412..1818920 1 NC_011205.1 identified by match to protein family HMM PF06097; hypothetical protein 1818920 439851001982 SeD_A1877 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215671.1 1817412 D 439851 CDS YP_002215672.1 198243170 1819626..1820627 1 NC_011205.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 1820627 add 439851001984 add Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 adenosine deaminase YP_002215672.1 1819626 D 439851 CDS YP_002215673.1 198244354 complement(1820702..1821742) 1 NC_011205.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase 1821742 439851001985 SeD_A1880 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxidoreductase YP_002215673.1 1820702 R 439851 CDS YP_002215674.1 198244975 1822384..1822599 1 NC_011205.1 YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes; oriC-binding nucleoid-associated protein 1822599 439851001986 SeD_A1881 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oriC-binding nucleoid-associated protein YP_002215674.1 1822384 D 439851 CDS YP_002215675.1 198245617 1822655..1823128 1 NC_011205.1 hypothetical protein 1823128 439851001987 SeD_A1882 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215675.1 1822655 D 439851 CDS YP_002215676.1 198246144 1823205..1823786 1 NC_011205.1 identified by match to protein family HMM PF02508; match to protein family HMM TIGR01943; Na(+)-translocating NADH-quinone reductase subunit E 1823786 rnfA 439851001988 rnfA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Na(+)-translocating NADH-quinone reductase subunit E YP_002215676.1 1823205 D 439851 CDS YP_002215677.1 198244365 1823786..1824364 1 NC_011205.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 1824364 rnfB 439851001989 rnfB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 electron transport complex protein RnfB YP_002215677.1 1823786 D 439851 CDS YP_002215678.1 198244954 1824357..1826471 1 NC_011205.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 1826471 439851001990 SeD_A1885 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 electron transport complex protein RnfC YP_002215678.1 1824357 D 439851 CDS YP_002215679.1 198245875 1826472..1827530 1 NC_011205.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 1827530 rnfD 439851001991 rnfD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 electron transport complex protein RnfD YP_002215679.1 1826472 D 439851 CDS YP_002215680.1 198246115 1827534..1828154 1 NC_011205.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 1828154 439851001992 SeD_A1887 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 electron transport complex protein RnfG YP_002215680.1 1827534 D 439851 CDS YP_002215681.1 198245620 1828157..1828849 1 NC_011205.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex RsxE subunit 1828849 439851001993 SeD_A1888 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 electron transport complex RsxE subunit YP_002215681.1 1828157 D 439851 CDS YP_002215682.1 198242866 1828849..1829484 1 NC_011205.1 DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines; endonuclease III 1829484 nth 439851001994 nth Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 endonuclease III YP_002215682.1 1828849 D 439851 CDS YP_002215683.1 198242193 1830086..1831591 1 NC_011205.1 mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; tripeptide transporter permease 1831591 tppB 439851001995 tppB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tripeptide transporter permease YP_002215683.1 1830086 D 439851 CDS YP_002215684.1 198243539 1831695..1832300 1 NC_011205.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathionine S-transferase 1832300 gst 439851001996 gst Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathionine S-transferase YP_002215684.1 1831695 D 439851 CDS YP_002215685.1 198244916 complement(1833279..1834553) 1 NC_011205.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1834553 tyrS 439851001999 tyrS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tyrosyl-tRNA synthetase YP_002215685.1 1833279 R 439851 CDS YP_002215686.1 198244321 complement(1834680..1835336) 1 NC_011205.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1835336 pdxH 439851002000 pdxH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pyridoxamine 5'-phosphate oxidase YP_002215686.1 1834680 R 439851 CDS YP_002215687.1 198242545 complement(1835395..1835718) 1 NC_011205.1 MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1835718 439851002001 SeD_A1896 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lysozyme inhibitor YP_002215687.1 1835395 R 439851 CDS YP_002215688.1 198241886 complement(1835812..1836933) 1 NC_011205.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 1836933 anmK 439851002002 anmK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anhydro-N-acetylmuramic acid kinase YP_002215688.1 1835812 R 439851 CDS YP_002215689.1 198243546 1837206..1837673 1 NC_011205.1 identified by match to protein family HMM PF05433; outer membrane lipoprotein pcp 1837673 439851002003 SeD_A1898 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane lipoprotein pcp YP_002215689.1 1837206 D 439851 CDS YP_002215690.1 198243021 complement(1837721..1838161) 1 NC_011205.1 Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 1838161 439851002004 SeD_A1899 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator SlyA YP_002215690.1 1837721 R 439851 CDS YP_002215691.1 198245113 1838408..1838599 1 NC_011205.1 identified by match to protein family HMM PF07869; hypothetical protein 1838599 439851002005 SeD_A1900 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215691.1 1838408 D 439851 CDS YP_002215692.1 198244487 1838602..1839462 1 NC_011205.1 identified by match to protein family HMM PF00529; P-hydroxybenzoic acid efflux pump subunit AaeA 1839462 439851002006 SeD_A1901 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 P-hydroxybenzoic acid efflux pump subunit AaeA YP_002215692.1 1838602 D 439851 CDS YP_002215693.1 198245502 1839462..1841501 1 NC_011205.1 identified by match to protein family HMM PF04632; fusaric acid resistance domain-containing protein 1841501 439851002007 SeD_A1902 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fusaric acid resistance domain-containing protein YP_002215693.1 1839462 D 439851 CDS YP_002215694.1 198246104 complement(1841477..1841998) 1 NC_011205.1 SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; superoxide dismutase 1841998 sodC 439851002008 sodC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 superoxide dismutase YP_002215694.1 1841477 R 439851 CDS YP_002215695.1 198245093 complement(1842078..1842974) 1 NC_011205.1 identified by match to protein family HMM PF00248; oxidoreductase YdhF 1842974 439851002009 SeD_A1904 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxidoreductase YdhF YP_002215695.1 1842078 R 439851 CDS YP_002215696.1 198244475 complement(1843025..1843177) 1 NC_011205.1 hypothetical protein 1843177 439851002010 SeD_A1905 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215696.1 1843025 R 439851 CDS YP_002215697.1 198243753 1843367..1843966 1 NC_011205.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1843966 439851002011 SeD_A1906 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 TetR family transcriptional regulator YP_002215697.1 1843367 D 439851 CDS YP_002215698.1 198243678 1844025..1845122 1 NC_011205.1 FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase 1845122 439851002012 SeD_A1907 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N-ethylmaleimide reductase YP_002215698.1 1844025 D 439851 CDS YP_002215699.1 198245070 1845191..1845598 1 NC_011205.1 Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; glyoxalase I 1845598 gloA 439851002013 gloA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glyoxalase I YP_002215699.1 1845191 D 439851 CDS YP_002215700.1 198245565 1845699..1846346 1 NC_011205.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1846346 rnt 439851002014 rnt Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonuclease T YP_002215700.1 1845699 D 439851 CDS YP_002215701.1 198245741 complement(1846424..1846771) 1 NC_011205.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; hypothetical protein 1846771 439851002015 SeD_A1910 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215701.1 1846424 R 439851 CDS YP_002215702.1 198242279 1847106..1847927 1 NC_011205.1 identified by match to protein family HMM PF00877; NlpC/P60 family protein 1847927 439851002016 SeD_A1911 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NlpC/P60 family protein YP_002215702.1 1847106 D 439851 CDS YP_002215703.1 198242517 1848054..1848635 1 NC_011205.1 SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; superoxide dismutase 1848635 439851002017 SeD_A1912 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 superoxide dismutase YP_002215703.1 1848054 D 439851 CDS YP_002215704.1 198244384 1849103..1850128 1 NC_011205.1 binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; DNA-binding transcriptional repressor PurR 1850128 purR 439851002018 purR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional repressor PurR YP_002215704.1 1849103 D 439851 CDS YP_002215705.1 198243042 complement(1850125..1851057) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 1851057 439851002019 SeD_A1914 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator YP_002215705.1 1850125 R 439851 CDS YP_002215706.1 198244877 1851170..1852375 1 NC_011205.1 uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 1852375 439851002020 SeD_A1915 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane transport protein YdhC YP_002215706.1 1851170 D 439851 CDS YP_002215707.1 198244094 1852665..1853813 1 NC_011205.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane fatty acyl phospholipid synthase 1853813 cfa 439851002021 cfa Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cyclopropane fatty acyl phospholipid synthase YP_002215707.1 1852665 D 439851 CDS YP_002215708.1 198244674 complement(1853855..1854496) 1 NC_011205.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1854496 ribE 439851002022 ribE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 riboflavin synthase subunit alpha YP_002215708.1 1853855 R 439851 CDS YP_002215709.1 198243327 1854713..1856086 1 NC_011205.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein 1856086 439851002023 SeD_A1918 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multidrug efflux protein YP_002215709.1 1854713 D 439851 CDS YP_002215710.1 198243973 complement(1856559..1857617) 1 NC_011205.1 member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli; secretion system apparatus protein SsaU 1857617 439851002026 SeD_A1921 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secretion system apparatus protein SsaU YP_002215710.1 1856559 R 439851 CDS YP_002215711.1 198243734 complement(1857614..1858393) 1 NC_011205.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401; type III secretion apparatus protein SpaR/YscT/HrcT 1858393 epaR 439851002027 epaR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III secretion apparatus protein SpaR/YscT/HrcT YP_002215711.1 1857614 R 439851 CDS YP_002215712.1 198242673 complement(1858394..1858507) 1 NC_011205.1 secretion system apparatus protein SsaS 1858507 439851002028 SeD_A1923 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secretion system apparatus protein SsaS YP_002215712.1 1858394 R 439851 CDS YP_002215713.1 198242436 complement(1858657..1859304) 1 NC_011205.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 1859304 epaP 439851002029 epaP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III secretion system protein YP_002215713.1 1858657 R 439851 CDS YP_002215714.1 198245358 complement(1859372..1860340) 1 NC_011205.1 identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551; type III secretion system protein 1860340 epaO 439851002030 epaO Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III secretion system protein YP_002215714.1 1859372 R 439851 CDS YP_002215715.1 198245704 complement(1860321..1860662) 1 NC_011205.1 secretion system apparatus protein SsaP 1860662 439851002031 SeD_A1926 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secretion system apparatus protein SsaP YP_002215715.1 1860321 R 439851 CDS YP_002215716.1 198244540 complement(1860676..1861053) 1 NC_011205.1 secretion system apparatus SsaO 1861053 439851002032 SeD_A1927 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secretion system apparatus SsaO YP_002215716.1 1860676 R 439851 CDS YP_002215717.1 198243404 complement(1861056..1862387) 1 NC_011205.1 identified by match to protein family HMM PF00006; match to protein family HMM TIGR01026; type III secretion system ATPase 1862387 439851002033 SeD_A1928 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III secretion system ATPase YP_002215717.1 1861056 R 439851 CDS YP_002215718.1 198244829 complement(1862347..1864392) 1 NC_011205.1 with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system; secretion system apparatus protein SsaV 1864392 439851002034 SeD_A1929 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secretion system apparatus protein SsaV YP_002215718.1 1862347 R 439851 CDS YP_002215719.1 198244394 complement(1864377..1864745) 1 NC_011205.1 secretion system apparatus protein SsaM 1864745 439851002035 SeD_A1930 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secretion system apparatus protein SsaM YP_002215719.1 1864377 R 439851 CDS YP_002215720.1 198245797 complement(1864803..1865795) 1 NC_011205.1 identified by match to protein family HMM PF07018; match to protein family HMM TIGR02511; secretion system apparatus protein SsaL 1865795 439851002036 SeD_A1931 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secretion system apparatus protein SsaL YP_002215720.1 1864803 R 439851 CDS YP_002215721.1 198244773 complement(1866456..1866728) 1 NC_011205.1 secretion system apparatus 1866728 439851002038 SeD_A1933 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secretion system apparatus YP_002215721.1 1866456 R 439851 CDS YP_002215722.1 198244261 complement(1867022..1867771) 1 NC_011205.1 identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544; type III secretion apparatus lipoprotein, YscJ/HrcJ family 1867771 439851002039 SeD_A1934 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III secretion apparatus lipoprotein, YscJ/HrcJ family YP_002215722.1 1867022 R 439851 CDS YP_002215723.1 198245696 complement(1867768..1868031) 1 NC_011205.1 identified by match to protein family HMM TIGR02497; type III secretion system apparatus protein 1868031 439851002040 SeD_A1935 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III secretion system apparatus protein YP_002215723.1 1867768 R 439851 CDS YP_002215724.1 198245217 complement(1868028..1868318) 1 NC_011205.1 identified by match to protein family HMM TIGR02498; SsaH family type III secretion system protein 1868318 439851002041 SeD_A1936 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 SsaH family type III secretion system protein YP_002215724.1 1868028 R 439851 CDS YP_002215725.1 198245569 complement(1868296..1868511) 1 NC_011205.1 identified by match to protein family HMM TIGR02105; type III secretion apparatus needle protein 1868511 eprI 439851002042 eprI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III secretion apparatus needle protein YP_002215725.1 1868296 R 439851 CDS YP_002215726.1 198245779 complement(1868605..1869294) 1 NC_011205.1 secreted effector protein 1869294 439851002043 SeD_A1938 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secreted effector protein YP_002215726.1 1868605 R 439851 CDS YP_002215727.1 198242735 complement(1869291..1870073) 1 NC_011205.1 secreted effector protein 1870073 439851002044 SeD_A1939 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secreted effector protein YP_002215727.1 1869291 R 439851 CDS YP_002215728.1 198242240 complement(1870089..1870517) 1 NC_011205.1 identified by match to protein family HMM TIGR02552; type III secretion low calcium response chaperone LcrH/SycD 1870517 439851002045 SeD_A1940 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III secretion low calcium response chaperone LcrH/SycD YP_002215728.1 1870089 R 439851 CDS YP_002215729.1 198245482 complement(1870575..1870730) 1 NC_011205.1 secreted effector protein 1870730 439851002046 SeD_A1941 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secreted effector protein YP_002215729.1 1870575 R 439851 CDS YP_002215730.1 198246043 complement(1870994..1871497) 1 NC_011205.1 translocation machinery component 1871497 439851002047 SeD_A1942 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 translocation machinery component YP_002215730.1 1870994 R 439851 CDS YP_002215731.1 198245906 complement(1871597..1873051) 1 NC_011205.1 identified by match to protein family HMM PF04888; translocation machinery component 1873051 439851002048 SeD_A1943 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 translocation machinery component YP_002215731.1 1871597 R 439851 CDS YP_002215732.1 198241901 complement(1873054..1873569) 1 NC_011205.1 identified by match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM TIGR02552; type III secretion low calcium response chaperone LcrH/SycD 1873569 439851002049 SeD_A1944 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III secretion low calcium response chaperone LcrH/SycD YP_002215732.1 1873054 R 439851 CDS YP_002215733.1 198242388 complement(1873524..1874114) 1 NC_011205.1 identified by match to protein family HMM PF03433; secretion system effector SseB 1874114 439851002050 SeD_A1945 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secretion system effector SseB YP_002215733.1 1873524 R 439851 CDS YP_002215734.1 198242905 complement(1874650..1874883) 1 NC_011205.1 identified by match to protein family HMM TIGR02501; YseE family type III secretion system protein 1874883 439851002051 SeD_A1946 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 YseE family type III secretion system protein YP_002215734.1 1874650 R 439851 CDS YP_002215735.1 198243835 complement(1874900..1876099) 1 NC_011205.1 identified by match to protein family HMM TIGR02500; type III secretion apparatus protein, YscD/HrpQ family 1876099 439851002052 SeD_A1947 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III secretion apparatus protein, YscD/HrpQ family YP_002215735.1 1874900 R 439851 CDS YP_002215736.1 198244927 complement(1876092..1877585) 1 NC_011205.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516; type III secretion outer membrane pore, YscC/HrcC family 1877585 439851002053 SeD_A1948 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III secretion outer membrane pore, YscC/HrcC family YP_002215736.1 1876092 R 439851 CDS YP_002215737.1 198243220 1878389..1881151 1 NC_011205.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; secretion system regulator:Sensor component 1881151 439851002054 SeD_A1949 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secretion system regulator:Sensor component YP_002215737.1 1878389 D 439851 CDS YP_002215738.1 198243723 1881182..1881820 1 NC_011205.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; hypothetical protein 1881820 439851002055 SeD_A1950 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215738.1 1881182 D 439851 CDS YP_002215739.1 198243073 1882898..1883857 1 NC_011205.1 identified by match to protein family HMM PF04463; match to protein family HMM PF08349; inner membrane protein 1883857 439851002058 SeD_A1953 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002215739.1 1882898 D 439851 CDS YP_002215740.1 198243480 complement(1883979..1884191) 1 NC_011205.1 hypothetical protein 1884191 439851002059 SeD_A1954 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215740.1 1883979 R 439851 CDS YP_002215741.1 198241824 complement(1884289..1884909) 1 NC_011205.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281; response regulator 1884909 439851002060 SeD_A1955 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 response regulator YP_002215741.1 1884289 R 439851 CDS YP_002215742.1 198242180 complement(1884884..1886632) 1 NC_011205.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor-kinase 1886632 439851002061 SeD_A1956 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sensor-kinase YP_002215742.1 1884884 R 439851 CDS YP_002215743.1 198245067 1886844..1887578 1 NC_011205.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01409; tetrathionate reductase subunit B 1887578 439851002062 SeD_A1957 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tetrathionate reductase subunit B YP_002215743.1 1886844 D 439851 CDS YP_002215744.1 198244750 1887579..1888601 1 NC_011205.1 identified by match to protein family HMM PF03916; tetrathionate reductase complex subunit C 1888601 439851002063 SeD_A1958 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tetrathionate reductase complex subunit C YP_002215744.1 1887579 D 439851 CDS YP_002215745.1 198245236 1888594..1891656 1 NC_011205.1 identified by match to protein family HMM PF01568; match to protein family HMM PF04879; molydopterin dinucleotide domain-containing protein 1891656 439851002064 SeD_A1959 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molydopterin dinucleotide domain-containing protein YP_002215745.1 1888594 D 439851 CDS YP_002215746.1 198245744 1891979..1893205 1 NC_011205.1 identified by match to protein family HMM PF00294; match to protein family HMM PF08220; match to protein family HMM PF08543; regulatory protein 1893205 439851002065 SeD_A1960 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 regulatory protein YP_002215746.1 1891979 D 439851 CDS YP_002215747.1 198242291 1893217..1893954 1 NC_011205.1 identified by match to protein family HMM PF07090; hypothetical protein 1893954 439851002066 SeD_A1961 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215747.1 1893217 D 439851 CDS YP_002215748.1 198243296 1894928..1896271 1 NC_011205.1 identified by match to protein family HMM PF00324; amino acid transporter 1896271 439851002068 SeD_A1963 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 amino acid transporter YP_002215748.1 1894928 D 439851 CDS YP_002215749.1 198243814 1896673..1898085 1 NC_011205.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1898085 pykF 439851002069 pykF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pyruvate kinase YP_002215749.1 1896673 D 439851 CDS YP_002215750.1 198244273 1898396..1898632 1 NC_011205.1 identified by match to protein family HMM PF04728; major outer membrane lipoprotein 1898632 lpp 439851002070 lpp Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 major outer membrane lipoprotein YP_002215750.1 1898396 D 439851 CDS YP_002215751.1 198244776 1898715..1898957 1 NC_011205.1 identified by match to protein family HMM PF04728; hypothetical protein 1898957 439851002071 SeD_A1966 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215751.1 1898715 D 439851 CDS YP_002215752.1 198245212 complement(1899023..1900024) 1 NC_011205.1 identified by match to protein family HMM PF01476; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 1900024 439851002072 SeD_A1967 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ErfK/YbiS/YcfS/YnhG family protein YP_002215752.1 1899023 R 439851 CDS YP_002215753.1 198242936 complement(1900179..1900595) 1 NC_011205.1 Acts with SufS to catalyze the formation of L-alanine from L-cysteine; cysteine desufuration protein SufE 1900595 439851002073 SeD_A1968 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cysteine desufuration protein SufE YP_002215753.1 1900179 R 439851 CDS YP_002215754.1 198243608 complement(1900608..1901828) 1 NC_011205.1 catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine; bifunctional cysteine desulfurase/selenocysteine lyase 1901828 439851002074 SeD_A1969 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional cysteine desulfurase/selenocysteine lyase YP_002215754.1 1900608 R 439851 CDS YP_002215755.1 198244393 complement(1901825..1903096) 1 NC_011205.1 with SufBC activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufD 1903096 sufD 439851002075 sufD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cysteine desulfurase activator complex subunit SufD YP_002215755.1 1901825 R 439851 CDS YP_002215756.1 198244878 complement(1903071..1903817) 1 NC_011205.1 part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase ATPase component 1903817 sufC 439851002076 sufC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cysteine desulfurase ATPase component YP_002215756.1 1903071 R 439851 CDS YP_002215757.1 198244344 complement(1903834..1905321) 1 NC_011205.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 1905321 sufB 439851002077 sufB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cysteine desulfurase activator complex subunit SufB YP_002215757.1 1903834 R 439851 CDS YP_002215758.1 198244881 complement(1905330..1905698) 1 NC_011205.1 functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein; iron-sulfur cluster assembly scaffold protein 1905698 sufA 439851002078 sufA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 iron-sulfur cluster assembly scaffold protein YP_002215758.1 1905330 R 439851 CDS YP_002215759.1 198242355 1906125..1907471 1 NC_011205.1 identified by match to protein family HMM PF00375; dicarboxylate/amino acid:cation (Na+ or H+) symporter family protein 1907471 439851002079 SeD_A1974 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dicarboxylate/amino acid:cation (Na+ or H+) symporter family protein YP_002215759.1 1906125 D 439851 CDS YP_002215760.1 198243641 complement(1908046..1908456) 1 NC_011205.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 1908456 439851002082 SeD_A1977 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215760.1 1908046 R 439851 CDS YP_002215761.1 198241853 complement(1908453..1911509) 1 NC_011205.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913; FAD linked oxidase 1911509 439851002083 SeD_A1978 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 FAD linked oxidase YP_002215761.1 1908453 R 439851 CDS YP_002215762.1 198241856 1911774..1912892 1 NC_011205.1 YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; inner membrane protein 1912892 439851002084 SeD_A1979 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002215762.1 1911774 D 439851 CDS YP_002215763.1 198242779 1913350..1913709 1 NC_011205.1 identified by match to protein family HMM PF08965; hypothetical protein 1913709 439851002086 SeD_A1981 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215763.1 1913350 D 439851 CDS YP_002215764.1 198243031 1913850..1914992 1 NC_011205.1 identified by match to protein family HMM PF07690; inner membrane transport protein YdiM 1914992 439851002087 SeD_A1982 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane transport protein YdiM YP_002215764.1 1913850 D 439851 CDS YP_002215765.1 198243701 1915356..1916591 1 NC_011205.1 identified by match to protein family HMM PF07690; major facilitator family transporter 1916591 439851002088 SeD_A1983 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 major facilitator family transporter YP_002215765.1 1915356 D 439851 CDS YP_002215766.1 198243143 1916658..1917524 1 NC_011205.1 YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate; quinate/shikimate dehydrogenase 1917524 439851002089 SeD_A1984 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 quinate/shikimate dehydrogenase YP_002215766.1 1916658 D 439851 CDS YP_002215767.1 198243639 1917569..1918327 1 NC_011205.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 1918327 aroD 439851002090 aroD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-dehydroquinate dehydratase YP_002215767.1 1917569 D 439851 CDS YP_002215768.1 198244182 1918481..1920076 1 NC_011205.1 identified by match to protein family HMM PF01144; propionate CoA-transferase 1920076 439851002091 SeD_A1986 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 propionate CoA-transferase YP_002215768.1 1918481 D 439851 CDS YP_002215769.1 198244805 1920090..1921241 1 NC_011205.1 may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; acyl-CoA dehydrogenase 1921241 439851002092 SeD_A1987 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acyl-CoA dehydrogenase YP_002215769.1 1920090 D 439851 CDS YP_002215770.1 198242423 complement(1921317..1921901) 1 NC_011205.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1921901 439851002093 SeD_A1988 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 AraC family transcriptional regulator YP_002215770.1 1921317 R 439851 CDS YP_002215771.1 198245305 1921956..1922108 1 NC_011205.1 identified by glimmer; hypothetical protein 1922108 439851002094 SeD_A1989 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215771.1 1921956 D 439851 CDS YP_002215772.1 198244476 1922364..1923128 1 NC_011205.1 YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; electron transfer flavoprotein YdiQ 1923128 ydiQ 439851002095 ydiQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 electron transfer flavoprotein YdiQ YP_002215772.1 1922364 D 439851 CDS YP_002215773.1 198244150 1923150..1924085 1 NC_011205.1 May play a role in a redox process; electron transfer flavoprotein subunit YdiR 1924085 439851002096 SeD_A1991 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 electron transfer flavoprotein subunit YdiR YP_002215773.1 1923150 D 439851 CDS YP_002215774.1 198243234 1924142..1925428 1 NC_011205.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF03486; hypothetical protein 1925428 439851002097 SeD_A1992 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215774.1 1924142 D 439851 CDS YP_002215775.1 198244994 1925425..1925718 1 NC_011205.1 ferredoxin like protein 1925718 439851002098 SeD_A1993 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ferredoxin like protein YP_002215775.1 1925425 D 439851 CDS YP_002215776.1 198243624 1925808..1927448 1 NC_011205.1 acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids; short chain acyl-CoA synthetase 1927448 439851002099 SeD_A1994 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 short chain acyl-CoA synthetase YP_002215776.1 1925808 D 439851 CDS YP_002215777.1 198243126 complement(1927490..1929868) 1 NC_011205.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1929868 ppsA 439851002100 ppsA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoenolpyruvate synthase YP_002215777.1 1927490 R 439851 CDS YP_002215778.1 198241764 1930205..1931038 1 NC_011205.1 identified by match to protein family HMM PF03618; hypothetical protein 1931038 439851002102 SeD_A1997 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215778.1 1930205 D 439851 CDS YP_002215779.1 198244037 1931194..1932240 1 NC_011205.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 1932240 439851002103 SeD_A1998 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phospho-2-dehydro-3-deoxyheptonate aldolase YP_002215779.1 1931194 D 439851 CDS YP_002215780.1 198245665 1932397..1932588 1 NC_011205.1 hypothetical protein 1932588 439851002104 SeD_A1999 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215780.1 1932397 D 439851 CDS YP_002215781.1 198243364 complement(1932623..1934065) 1 NC_011205.1 identified by match to protein family HMM PF02696; hypothetical protein 1934065 439851002105 SeD_A2000 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215781.1 1932623 R 439851 CDS YP_002215782.1 198242853 complement(1934127..1934840) 1 NC_011205.1 hypothetical protein 1934840 439851002106 SeD_A2001 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215782.1 1934127 R 439851 CDS YP_002215783.1 198245732 complement(1935154..1935618) 1 NC_011205.1 identified by match to protein family HMM PF00877; lipoprotein nlpC 1935618 439851002107 SeD_A2002 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein nlpC YP_002215783.1 1935154 R 439851 CDS YP_002215784.1 198245265 complement(1935695..1936444) 1 NC_011205.1 ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12-transporter ATPase 1936444 439851002108 SeD_A2003 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 vitamin B12-transporter ATPase YP_002215784.1 1935695 R 439851 CDS YP_002215785.1 198245225 complement(1936444..1936995) 1 NC_011205.1 similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; glutathione peroxidase 1936995 btuE 439851002109 btuE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione peroxidase YP_002215785.1 1936444 R 439851 CDS YP_002215786.1 198244726 complement(1937087..1938067) 1 NC_011205.1 with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12-transporter permease 1938067 439851002110 SeD_A2005 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 vtamin B12-transporter permease YP_002215786.1 1937087 R 439851 CDS YP_002215787.1 198244241 complement(1938270..1938569) 1 NC_011205.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 1938569 ihfA 439851002111 ihfA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 integration host factor subunit alpha YP_002215787.1 1938270 R 439851 CDS YP_002215788.1 198243805 complement(1938574..1940961) 1 NC_011205.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1940961 pheT 439851002112 pheT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phenylalanyl-tRNA synthetase subunit beta YP_002215788.1 1938574 R 439851 CDS YP_002215789.1 198243174 complement(1940977..1941960) 1 NC_011205.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1941960 pheS 439851002113 pheS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phenylalanyl-tRNA synthetase subunit alpha YP_002215789.1 1940977 R 439851 CDS YP_002215790.1 198242540 complement(1942262..1942618) 1 NC_011205.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1942618 rplT 439851002114 rplT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L20 YP_002215790.1 1942262 R 439851 CDS YP_002215791.1 198245510 complement(1942669..1942866) 1 NC_011205.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 1942866 rpmI 439851002115 rpmI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L35 YP_002215791.1 1942669 R 439851 CDS YP_002215792.1 198244931 complement(1942962..1943396) 1 NC_011205.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1943396 infC 439851002116 infC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 translation initiation factor IF-3 YP_002215792.1 1942962 R 439851 CDS YP_002215793.1 198243456 complement(1943508..1945436) 1 NC_011205.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 1945436 thrS 439851002117 thrS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 threonyl-tRNA synthetase YP_002215793.1 1943508 R 439851 CDS YP_002215794.1 198242960 1946334..1947557 1 NC_011205.1 O-antigen polymerase 1947557 439851002118 SeD_A2013 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 O-antigen polymerase YP_002215794.1 1946334 D 439851 CDS YP_002215795.1 198242131 complement(1948242..1949096) 1 NC_011205.1 identified by match to protein family HMM PF01223; DNA/RNA non-specific endonuclease 1949096 439851002119 SeD_A2014 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA/RNA non-specific endonuclease YP_002215795.1 1948242 R 439851 CDS YP_008169831.1 528879900 complement(1949158..1949406) 1 NC_011205.1 hypothetical protein 1949406 439851002120 SeD_A2015 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_008169831.1 1949158 R 439851 CDS YP_002215796.1 198245612 1949549..1950508 1 NC_011205.1 outer membrane protein 1950508 439851002121 SeD_A2016 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein YP_002215796.1 1949549 D 439851 CDS YP_002215797.1 198244884 complement(1950557..1951282) 1 NC_011205.1 identified by match to protein family HMM PF04338; outer membrane protein 1951282 439851002122 SeD_A2017 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein YP_002215797.1 1950557 R 439851 CDS YP_002215798.1 198244157 1951604..1952536 1 NC_011205.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; 6-phosphofructokinase 1952536 pfkB 439851002123 pfkB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 6-phosphofructokinase YP_002215798.1 1951604 D 439851 CDS YP_002215799.1 198244559 1952632..1952922 1 NC_011205.1 hypothetical protein 1952922 439851002124 SeD_A2019 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215799.1 1952632 D 439851 CDS YP_002215800.1 198246000 1953029..1953889 1 NC_011205.1 identified by match to protein family HMM PF01636; match to protein family HMM PF03881; fructosamine kinase 1953889 439851002125 SeD_A2020 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fructosamine kinase YP_002215800.1 1953029 D 439851 CDS YP_002215801.1 198245944 complement(1953932..1954468) 1 NC_011205.1 hypothetical protein 1954468 439851002126 SeD_A2021 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215801.1 1953932 R 439851 CDS YP_002215802.1 198245370 1954617..1955285 1 NC_011205.1 YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase 1955285 439851002127 SeD_A2022 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-deoxyglucose-6-phosphatase YP_002215802.1 1954617 D 439851 CDS YP_002215803.1 198244414 1955423..1956022 1 NC_011205.1 identified by match to protein family HMM PF04307; hypothetical protein 1956022 439851002128 SeD_A2023 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215803.1 1955423 D 439851 CDS YP_002215804.1 198243533 1956159..1957550 1 NC_011205.1 identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein 1957550 439851002129 SeD_A2024 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sodium:dicarboxylate symporter family protein YP_002215804.1 1956159 D 439851 CDS YP_002215805.1 198242757 complement(1957652..1957894) 1 NC_011205.1 cell division modulator 1957894 439851002130 SeD_A2025 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell division modulator YP_002215805.1 1957652 R 439851 CDS YP_002215806.1 198242566 1958261..1960513 1 NC_011205.1 Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II 1960513 katE 439851002131 katE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydroperoxidase II YP_002215806.1 1958261 D 439851 CDS YP_002215807.1 198241790 complement(1960557..1961315) 1 NC_011205.1 identified by match to protein family HMM PF04794; hypothetical protein 1961315 439851002132 SeD_A2027 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215807.1 1960557 R 439851 CDS YP_002215808.1 198246086 complement(1961328..1962683) 1 NC_011205.1 identified by match to protein family HMM PF02056; 6-phospho-beta-glucosidase 1962683 439851002133 SeD_A2028 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 6-phospho-beta-glucosidase YP_002215808.1 1961328 R 439851 CDS YP_002215809.1 198245333 complement(1962808..1963650) 1 NC_011205.1 represses the celABCDF-ydjC operon involved in carbon uptake; DNA-binding transcriptional regulator ChbR 1963650 439851002134 SeD_A2029 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator ChbR YP_002215809.1 1962808 R 439851 CDS YP_002215810.1 198245752 complement(1963661..1964008) 1 NC_011205.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA 1964008 439851002135 SeD_A2030 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA YP_002215810.1 1963661 R 439851 CDS YP_002215811.1 198242352 complement(1964059..1965417) 1 NC_011205.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC 1965417 chbC 439851002136 chbC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC YP_002215811.1 1964059 R 439851 CDS YP_002215812.1 198241867 complement(1965500..1965820) 1 NC_011205.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB 1965820 chbB 439851002137 chbB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB YP_002215812.1 1965500 R 439851 CDS YP_002215813.1 198243635 complement(1966121..1966462) 1 NC_011205.1 osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 1966462 osmE 439851002138 osmE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional activator OsmE YP_002215813.1 1966121 R 439851 CDS YP_002215814.1 198243135 complement(1966594..1966728) 1 NC_011205.1 identified by glimmer; hypothetical protein 1966728 439851002139 SeD_A2035 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215814.1 1966594 R 439851 CDS YP_002215815.1 198245485 1966681..1967508 1 NC_011205.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1967508 nadE 439851002140 nadE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NAD synthetase YP_002215815.1 1966681 D 439851 CDS YP_002215816.1 198245824 1967629..1968510 1 NC_011205.1 3' incision activity; acts with UvrC; nucleotide excision repair endonuclease 1968510 439851002141 SeD_A2036 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nucleotide excision repair endonuclease YP_002215816.1 1967629 D 439851 CDS YP_002215817.1 198244232 complement(1968585..1969070) 1 NC_011205.1 periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP; periplasmic protein 1969070 spy 439851002142 spy Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 periplasmic protein YP_002215817.1 1968585 R 439851 CDS YP_002215818.1 198244591 complement(1969154..1969267) 1 NC_011205.1 identified by glimmer; hypothetical protein 1969267 439851002143 SeD_A2038 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215818.1 1969154 R 439851 CDS YP_002215819.1 198242427 complement(1969406..1970374) 1 NC_011205.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1970374 astE 439851002144 astE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 succinylglutamate desuccinylase YP_002215819.1 1969406 R 439851 CDS YP_002215820.1 198242760 complement(1970367..1971710) 1 NC_011205.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 1971710 astB 439851002145 astB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 succinylarginine dihydrolase YP_002215820.1 1970367 R 439851 CDS YP_002215821.1 198244926 complement(1971707..1973185) 1 NC_011205.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 1973185 astD 439851002146 astD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 succinylglutamic semialdehyde dehydrogenase YP_002215821.1 1971707 R 439851 CDS YP_002215822.1 198244403 complement(1973182..1974216) 1 NC_011205.1 identified by match to protein family HMM PF04958; match to protein family HMM TIGR03243; match to protein family HMM TIGR03244; arginine succinyltransferase 1974216 astA 439851002147 astA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arginine succinyltransferase YP_002215822.1 1973182 R 439851 CDS YP_002215823.1 198243115 complement(1974207..1975433) 1 NC_011205.1 catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate; bifunctional succinylornithine transaminase/acetylornithine transaminase 1975433 439851002148 SeD_A2043 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional succinylornithine transaminase/acetylornithine transaminase YP_002215823.1 1974207 R 439851 CDS YP_002215824.1 198244728 1975879..1976685 1 NC_011205.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 1976685 xth 439851002149 xth Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 exonuclease III YP_002215824.1 1975879 D 439851 CDS YP_002215825.1 198241904 1976758..1977174 1 NC_011205.1 identified by match to protein family HMM PF00293; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase 1977174 439851002150 SeD_A2045 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase YP_002215825.1 1976758 D 439851 CDS YP_002215826.1 198242373 complement(1977134..1977409) 1 NC_011205.1 identified by match to protein family HMM PF07383; hypothetical protein 1977409 439851002151 SeD_A2046 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215826.1 1977134 R 439851 CDS YP_002215827.1 198246190 1977648..1978991 1 NC_011205.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1978991 gdhA 439851002152 gdhA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamate dehydrogenase YP_002215827.1 1977648 D 439851 CDS YP_002215828.1 198245120 complement(1979021..1980970) 1 NC_011205.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 1980970 topB 439851002153 topB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA topoisomerase III YP_002215828.1 1979021 R 439851 CDS YP_002215829.1 198243320 complement(1980975..1982018) 1 NC_011205.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 1982018 selD 439851002154 selD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 selenophosphate synthetase YP_002215829.1 1980975 R 439851 CDS YP_002215830.1 198243847 complement(1982136..1982687) 1 NC_011205.1 identified by match to protein family HMM PF00881; hypothetical protein 1982687 439851002155 SeD_A2050 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215830.1 1982136 R 439851 CDS YP_002215831.1 198245686 1982861..1984717 1 NC_011205.1 SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; protease 4 1984717 sppA 439851002156 sppA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 protease 4 YP_002215831.1 1982861 D 439851 CDS YP_002215832.1 198242806 1984813..1985829 1 NC_011205.1 converts asparagine to aspartate and ammonia; cytoplasmic asparaginase I 1985829 ansA 439851002157 ansA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytoplasmic asparaginase I YP_002215832.1 1984813 D 439851 CDS YP_002215833.1 198244735 1985856..1986512 1 NC_011205.1 catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; nicotinamidase/pyrazinamidase 1986512 439851002158 SeD_A2053 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nicotinamidase/pyrazinamidase YP_002215833.1 1985856 D 439851 CDS YP_002215834.1 198244262 complement(1986615..1987973) 1 NC_011205.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; inner membrane metabolite transport protein YdjE 1987973 439851002159 SeD_A2054 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane metabolite transport protein YdjE YP_002215834.1 1986615 R 439851 CDS YP_002215835.1 198243818 complement(1988109..1988867) 1 NC_011205.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; DeoR family transcriptional regulator 1988867 439851002160 SeD_A2055 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DeoR family transcriptional regulator YP_002215835.1 1988109 R 439851 CDS YP_002215836.1 198243312 complement(1988997..1989980) 1 NC_011205.1 identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family 1989980 439851002161 SeD_A2056 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxidoreductase, aldo/keto reductase family YP_002215836.1 1988997 R 439851 CDS YP_002215837.1 198245228 complement(1989990..1990937) 1 NC_011205.1 identified by match to protein family HMM PF00294; PfkB family kinase 1990937 439851002162 SeD_A2057 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PfkB family kinase YP_002215837.1 1989990 R 439851 CDS YP_002215838.1 198242161 complement(1990942..1991778) 1 NC_011205.1 identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; fructose-bisphosphate aldolase, class II 1991778 439851002163 SeD_A2058 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fructose-bisphosphate aldolase, class II YP_002215838.1 1990942 R 439851 CDS YP_002215839.1 198244287 complement(1991800..1992843) 1 NC_011205.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; sorbitol dehydrogenase 1992843 gutB 439851002164 gutB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sorbitol dehydrogenase YP_002215839.1 1991800 R 439851 CDS YP_002215840.1 198244082 complement(1992854..1994233) 1 NC_011205.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; inner membrane metabolite transport protein YdjE 1994233 439851002165 SeD_A2060 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane metabolite transport protein YdjE YP_002215840.1 1992854 R 439851 CDS YP_002215841.1 198243567 complement(1994260..1995336) 1 NC_011205.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; oxidoreductase, zinc-binding dehydrogenase family 1995336 439851002166 SeD_A2061 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxidoreductase, zinc-binding dehydrogenase family YP_002215841.1 1994260 R 439851 CDS YP_002215842.1 198243365 complement(1995453..1995587) 1 NC_011205.1 identified by glimmer; hypothetical protein 1995587 439851002167 SeD_A2062 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215842.1 1995453 R 439851 CDS YP_008169832.1 528879901 1995702..1995836 1 NC_011205.1 chitinase 1995836 439851002168 SeD_A2063 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chitinase YP_008169832.1 1995702 D 439851 CDS YP_002215843.1 198242074 complement(1996230..1996508) 1 NC_011205.1 identified by match to protein family HMM PF07023; negative transcription regulator subunit 1 1996508 439851002169 SeD_A2064 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 negative transcription regulator subunit 1 YP_002215843.1 1996230 R 439851 CDS YP_002215844.1 198245259 complement(1996550..1996963) 1 NC_011205.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1996963 msrB 439851002170 msrB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methionine sulfoxide reductase B YP_002215844.1 1996550 R 439851 CDS YP_002215845.1 198242222 1997305..1998300 1 NC_011205.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; gIyceraldehyde-3-phosphate dehydrogenase 1998300 gapA 439851002171 gapA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gIyceraldehyde-3-phosphate dehydrogenase YP_002215845.1 1997305 D 439851 CDS YP_002215846.1 198244034 1998629..1999513 1 NC_011205.1 identified by match to protein family HMM PF01263; aldose 1-epimerase 1999513 439851002172 SeD_A2067 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aldose 1-epimerase YP_002215846.1 1998629 D 439851 CDS YP_002215847.1 198245753 complement(1999612..2000460) 1 NC_011205.1 identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family 2000460 439851002173 SeD_A2068 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxidoreductase, aldo/keto reductase family YP_002215847.1 1999612 R 439851 CDS YP_002215848.1 198243291 complement(2000566..2001762) 1 NC_011205.1 chondroitin sulfate/heparin utilization regulation protein 2001762 439851002174 SeD_A2069 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chondroitin sulfate/heparin utilization regulation protein YP_002215848.1 2000566 R 439851 CDS YP_002215849.1 198242440 complement(2002052..2002798) 1 NC_011205.1 identified by match to protein family HMM PF06629; MltA-interacting protein 2002798 439851002175 SeD_A2070 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 MltA-interacting protein YP_002215849.1 2002052 R 439851 CDS YP_002215850.1 198245623 2003225..2005159 1 NC_011205.1 identified by match to protein family HMM PF06798; match to protein family HMM PF08298; serine protein kinase, PrkA 2005159 439851002176 SeD_A2071 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 serine protein kinase, PrkA YP_002215850.1 2003225 D 439851 CDS YP_002215851.1 198246165 2005282..2006568 1 NC_011205.1 identified by match to protein family HMM PF04285; hypothetical protein 2006568 439851002177 SeD_A2072 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215851.1 2005282 D 439851 CDS YP_002215852.1 198244426 2007208..2008701 1 NC_011205.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; ggdef domain-containing protein 2008701 439851002178 SeD_A2073 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ggdef domain-containing protein YP_002215852.1 2007208 D 439851 CDS YP_002215853.1 198242130 2008742..2009269 1 NC_011205.1 identified by match to protein family HMM PF04073; prolyl-tRNA synthetase 2009269 439851002179 SeD_A2074 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 prolyl-tRNA synthetase YP_002215853.1 2008742 D 439851 CDS YP_002215854.1 198244924 complement(2009266..2009409) 1 NC_011205.1 inner membrane protein 2009409 439851002180 SeD_A2075 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002215854.1 2009266 R 439851 CDS YP_002215855.1 198243930 complement(2009440..2009577) 1 NC_011205.1 hypothetical protein 2009577 439851002181 SeD_A2076 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215855.1 2009440 R 439851 CDS YP_002215856.1 198242364 2009579..2010025 1 NC_011205.1 identified by match to protein family HMM PF04284; hypothetical protein 2010025 439851002182 SeD_A2077 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215856.1 2009579 D 439851 CDS YP_002215857.1 198243371 2010900..2012084 1 NC_011205.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00896; inner membrane transport protein YeaN 2012084 439851002184 SeD_A2079 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane transport protein YeaN YP_002215857.1 2010900 D 439851 CDS YP_002215858.1 198245251 complement(2012051..2012188) 1 NC_011205.1 identified by glimmer; hypothetical protein 2012188 439851002185 SeD_A2080 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215858.1 2012051 R 439851 CDS YP_002215859.1 198245777 2012203..2012550 1 NC_011205.1 identified by match to protein family HMM PF04343; hypothetical protein 2012550 439851002186 SeD_A2081 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215859.1 2012203 D 439851 CDS YP_002215860.1 198245125 complement(2012536..2012847) 1 NC_011205.1 hypothetical protein 2012847 439851002187 SeD_A2082 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215860.1 2012536 R 439851 CDS YP_002215861.1 198244944 complement(2012916..2013167) 1 NC_011205.1 identified by match to protein family HMM PF03891; hypothetical protein 2013167 439851002188 SeD_A2083 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215861.1 2012916 R 439851 CDS YP_002215862.1 198244760 2013422..2013538 1 NC_011205.1 hypothetical protein 2013538 439851002189 SeD_A2084 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215862.1 2013422 D 439851 CDS YP_002215863.1 198244411 complement(2013600..2013848) 1 NC_011205.1 identified by match to protein family HMM PF04226; hypothetical protein 2013848 439851002190 SeD_A2085 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215863.1 2013600 R 439851 CDS YP_002215864.1 198244889 complement(2013856..2014041) 1 NC_011205.1 hypothetical protein 2014041 439851002191 SeD_A2087 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215864.1 2013856 R 439851 CDS YP_002215865.1 198243324 complement(2014162..2014803) 1 NC_011205.1 hypothetical protein 2014803 439851002193 SeD_A2088 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215865.1 2014162 R 439851 CDS YP_002215866.1 198243662 complement(2015033..2015215) 1 NC_011205.1 identified by match to protein family HMM PF08956; hypothetical protein 2015215 439851002194 SeD_A2089 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215866.1 2015033 R 439851 CDS YP_002215867.1 198245930 complement(2015218..2015580) 1 NC_011205.1 identified by match to protein family HMM PF09313; hypothetical protein 2015580 439851002195 SeD_A2091 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215867.1 2015218 R 439851 CDS YP_002215868.1 198244069 2015551..2015736 1 NC_011205.1 identified by glimmer; hypothetical protein 2015736 439851002196 SeD_A2090 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215868.1 2015551 D 439851 CDS YP_002215869.1 198242029 complement(2015754..2016392) 1 NC_011205.1 identified by match to protein family HMM PF01810; leucine export protein LeuE 2016392 439851002197 SeD_A2092 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 leucine export protein LeuE YP_002215869.1 2015754 R 439851 CDS YP_002215870.1 198242798 complement(2016589..2017134) 1 NC_011205.1 catalyzes the interconversion of chorismate to prephenate; chorismate mutase 2017134 439851002198 SeD_A2093 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chorismate mutase YP_002215870.1 2016589 R 439851 CDS YP_002215871.1 198245308 2017510..2017698 1 NC_011205.1 hypothetical protein 2017698 439851002199 SeD_A2094 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215871.1 2017510 D 439851 CDS YP_002215872.1 198246020 complement(2017952..2018800) 1 NC_011205.1 identified by match to protein family HMM PF00376; transcriptional regulator 2018800 439851002200 SeD_A2095 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002215872.1 2017952 R 439851 CDS YP_002215873.1 198245296 complement(2018869..2019516) 1 NC_011205.1 identified by match to protein family HMM PF00196; regulatory protein 2019516 439851002201 SeD_A2096 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 regulatory protein YP_002215873.1 2018869 R 439851 CDS YP_002215874.1 198244038 complement(2020504..2021154) 1 NC_011205.1 identified by match to protein family HMM PF09223; hypothetical protein 2021154 439851002203 SeD_A2098 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215874.1 2020504 R 439851 CDS YP_002215875.1 198244637 2021312..2021479 1 NC_011205.1 hypothetical protein 2021479 439851002205 SeD_A2099 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215875.1 2021312 D 439851 CDS YP_002215876.1 198242663 2021868..2023001 1 NC_011205.1 identified by match to protein family HMM PF00924; MscS Mechanosensitive ion channel 2023001 439851002206 SeD_A2101 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 MscS Mechanosensitive ion channel YP_002215876.1 2021868 D 439851 CDS YP_002215877.1 198246049 complement(2023083..2023673) 1 NC_011205.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2023673 439851002207 SeD_A2102 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter ATP-binding protein YP_002215877.1 2023083 R 439851 CDS YP_002215878.1 198241794 complement(2023667..2024464) 1 NC_011205.1 identified by match to protein family HMM PF00005; Adipeptide/di-oligopeptide/nickel ABC transporter ATP binding subunit 2024464 439851002208 SeD_A2103 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Adipeptide/di-oligopeptide/nickel ABC transporter ATP binding subunit YP_002215878.1 2023667 R 439851 CDS YP_002215879.1 198242152 complement(2024458..2025270) 1 NC_011205.1 identified by match to protein family HMM PF00528; Adipeptide/di-oligopeptide/nickel ABC transporter permease subunit 2025270 439851002209 SeD_A2104 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Adipeptide/di-oligopeptide/nickel ABC transporter permease subunit YP_002215879.1 2024458 R 439851 CDS YP_002215880.1 198243074 complement(2025260..2026234) 1 NC_011205.1 identified by match to protein family HMM PF00528; dipeptide/oligopeptide/nickel ABC transporter, permease 2026234 439851002210 SeD_A2105 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dipeptide/oligopeptide/nickel ABC transporter, permease YP_002215880.1 2025260 R 439851 CDS YP_002215881.1 198243726 complement(2026234..2027868) 1 NC_011205.1 identified by match to protein family HMM PF00496; nickel ABC transporter periplasmic nickel-binding protein 2027868 439851002211 SeD_A2106 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nickel ABC transporter periplasmic nickel-binding protein YP_002215881.1 2026234 R 439851 CDS YP_002215882.1 198242336 2028011..2028154 1 NC_011205.1 identified by glimmer; hypothetical protein 2028154 439851002212 SeD_A2107 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215882.1 2028011 D 439851 CDS YP_002215883.1 198243909 2028300..2028458 1 NC_011205.1 identified by glimmer; hypothetical protein 2028458 439851002213 SeD_A2108 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215883.1 2028300 D 439851 CDS YP_002215884.1 198243157 complement(2028435..2028569) 1 NC_011205.1 identified by glimmer; hypothetical protein 2028569 439851002214 SeD_A2110 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215884.1 2028435 R 439851 CDS YP_002215885.1 198244136 2028550..2028864 1 NC_011205.1 hypothetical protein 2028864 439851002215 SeD_A2109 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215885.1 2028550 D 439851 CDS YP_002215886.1 198244563 2029013..2029543 1 NC_011205.1 identified by match to protein family HMM PF01292; nickel-dependent hydrogenase, B-type cytochrome subunit 2029543 439851002216 SeD_A2111 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nickel-dependent hydrogenase, B-type cytochrome subunit YP_002215886.1 2029013 D 439851 CDS YP_002215887.1 198244875 complement(2031009..2031479) 1 NC_011205.1 identified by match to protein family HMM PF00011; heat shock protein 2031479 439851002219 SeD_A2114 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 heat shock protein YP_002215887.1 2031009 R 439851 CDS YP_002215888.1 198244250 2031796..2031969 1 NC_011205.1 hypothetical protein 2031969 439851002220 SeD_A2115 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215888.1 2031796 D 439851 CDS YP_002215889.1 198245834 complement(2032101..2032226) 1 NC_011205.1 hypothetical protein 2032226 439851002221 SeD_A2116 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215889.1 2032101 R 439851 CDS YP_002215890.1 198246097 2032604..2032948 1 NC_011205.1 PliC; periplasmic lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 2032948 439851002222 SeD_A2117 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lysozyme inhibitor YP_002215890.1 2032604 D 439851 CDS YP_002215891.1 198241920 complement(2034170..2034727) 1 NC_011205.1 identified by match to protein family HMM PF06316; virulence membrane protein PagC 2034727 439851002225 SeD_A2120 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 virulence membrane protein PagC YP_002215891.1 2034170 R 439851 CDS YP_002215892.1 198242559 complement(2035107..2035235) 1 NC_011205.1 hypothetical protein 2035235 439851002226 SeD_A2121 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215892.1 2035107 R 439851 CDS YP_002215893.1 198242919 2035765..2035893 1 NC_011205.1 identified by glimmer; hypothetical protein 2035893 439851002227 SeD_A2122 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215893.1 2035765 D 439851 CDS YP_002215894.1 198242895 2036561..2037082 1 NC_011205.1 identified by match to protein family HMM PF00652; envelope protein EnvE 2037082 439851002228 SeD_A2123 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 envelope protein EnvE YP_002215894.1 2036561 D 439851 CDS YP_002215895.1 198243071 2037273..2037512 1 NC_011205.1 identified by match to protein family HMM PF06183; hypothetical protein 2037512 439851002229 SeD_A2124 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215895.1 2037273 D 439851 CDS YP_002215896.1 198244361 complement(2039781..2040905) 1 NC_011205.1 hypothetical protein 2040905 439851002232 SeD_A2127 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215896.1 2039781 R 439851 CDS YP_002215897.1 198245823 complement(2041366..2042616) 1 NC_011205.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 2042616 icd 439851002233 icd Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 isocitrate dehydrogenase YP_002215897.1 2041366 R 439851 CDS YP_002215898.1 198244181 2042716..2043453 1 NC_011205.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093; RNA pseudouridine synthase family protein 2043453 439851002234 SeD_A2129 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RNA pseudouridine synthase family protein YP_002215898.1 2042716 D 439851 CDS YP_002215899.1 198244395 2043450..2043779 1 NC_011205.1 hypothetical protein 2043779 439851002235 SeD_A2130 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215899.1 2043450 D 439851 CDS YP_002215900.1 198246010 2043791..2044252 1 NC_011205.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 2044252 439851002236 SeD_A2131 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NUDIX family hydrolase YP_002215900.1 2043791 D 439851 CDS YP_002215901.1 198245672 2044306..2045412 1 NC_011205.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2045412 mnmA 439851002237 mnmA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA-specific 2-thiouridylase MnmA YP_002215901.1 2044306 D 439851 CDS YP_002215902.1 198242786 2045499..2046140 1 NC_011205.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 2046140 439851002238 SeD_A2133 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215902.1 2045499 D 439851 CDS YP_002215903.1 198243498 2046144..2047514 1 NC_011205.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2047514 purB 439851002239 purB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 adenylosuccinate lyase YP_002215903.1 2046144 D 439851 CDS YP_002215904.1 198244282 2047638..2048312 1 NC_011205.1 response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; DNA-binding transcriptional regulator PhoP 2048312 439851002240 SeD_A2135 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator PhoP YP_002215904.1 2047638 D 439851 CDS YP_002215905.1 198245737 2048312..2049775 1 NC_011205.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08918; sensor protein PhoQ 2049775 439851002241 SeD_A2136 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sensor protein PhoQ YP_002215905.1 2048312 D 439851 CDS YP_002215906.1 198242002 2049856..2050977 1 NC_011205.1 identified by match to protein family HMM PF08007; cupin family protein 2050977 439851002242 SeD_A2137 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cupin family protein YP_002215906.1 2049856 D 439851 CDS YP_002215907.1 198244756 complement(2051017..2052351) 1 NC_011205.1 identified by match to protein family HMM PF07719; hypothetical protein 2052351 439851002243 SeD_A2138 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215907.1 2051017 R 439851 CDS YP_002215908.1 198245527 complement(2052355..2053584) 1 NC_011205.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 2053584 pepT 439851002244 pepT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidase T YP_002215908.1 2052355 R 439851 CDS YP_002215909.1 198243824 2053835..2054971 1 NC_011205.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase protein 2054971 potA 439851002245 potA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 putrescine/spermidine ABC transporter ATPase protein YP_002215909.1 2053835 D 439851 CDS YP_002215910.1 198244554 2054955..2055818 1 NC_011205.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter membrane protein 2055818 potB 439851002246 potB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 spermidine/putrescine ABC transporter membrane protein YP_002215910.1 2054955 D 439851 CDS YP_002215911.1 198242953 2055912..2056088 1 NC_011205.1 hypothetical protein 2056088 439851002247 SeD_A2142 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215911.1 2055912 D 439851 CDS YP_002215912.1 198243450 2056147..2057157 1 NC_011205.1 translocated by the type III secretion system SPI-2; required for the formation of lysosomal glycoprotein structures (Sifs); required for maintenance of membrane in the Salmonella-containing vacuole; a cysteine residue with CAAX motif is modified by isoprenoid addition of protein geranylgeranyl transferase I; also modified by S-acylation; secreted effector protein 2057157 sifA 439851002248 sifA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secreted effector protein YP_002215912.1 2056147 D 439851 CDS YP_002215913.1 198244629 2057248..2057370 1 NC_011205.1 identified by glimmer; hypothetical protein 2057370 439851002249 SeD_A2144 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215913.1 2057248 D 439851 CDS YP_002215914.1 198243884 2057473..2058252 1 NC_011205.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter membrane protein 2058252 potC 439851002250 potC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 spermidine/putrescine ABC transporter membrane protein YP_002215914.1 2057473 D 439851 CDS YP_002215915.1 198244206 2058277..2059323 1 NC_011205.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; spermidine/putrescine ABC transporter periplasmic substrate-binding protein 2059323 potD 439851002251 potD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 spermidine/putrescine ABC transporter periplasmic substrate-binding protein YP_002215915.1 2058277 D 439851 CDS YP_002215916.1 198243292 complement(2059405..2060226) 1 NC_011205.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 2060226 npdA 439851002252 npdA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NAD-dependent deacetylase YP_002215916.1 2059405 R 439851 CDS YP_002215917.1 198245162 complement(2060245..2061156) 1 NC_011205.1 catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 2061156 nagK 439851002253 nagK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N-acetyl-D-glucosamine kinase YP_002215917.1 2060245 R 439851 CDS YP_002215918.1 198244849 complement(2061185..2062429) 1 NC_011205.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 2062429 lolE 439851002254 lolE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane-specific lipoprotein transporter subunit LolE YP_002215918.1 2061185 R 439851 CDS YP_002215919.1 198245771 complement(2062429..2063130) 1 NC_011205.1 outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone; lipoprotein transporter ATP-binding subunit 2063130 lolD 439851002255 lolD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein transporter ATP-binding subunit YP_002215919.1 2062429 R 439851 CDS YP_002215920.1 198245184 complement(2063123..2064322) 1 NC_011205.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 2064322 lolC 439851002256 lolC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane-specific lipoprotein transporter subunit LolC YP_002215920.1 2063123 R 439851 CDS YP_002215921.1 198242832 complement(2064496..2064654) 1 NC_011205.1 identified by glimmer; hypothetical protein 2064654 439851002257 SeD_A2152 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215921.1 2064496 R 439851 CDS YP_002215922.1 198242225 2064660..2068106 1 NC_011205.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 2068106 mfd 439851002258 mfd Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcription-repair coupling factor YP_002215922.1 2064660 D 439851 CDS YP_002215923.1 198243629 2068254..2069219 1 NC_011205.1 identified by match to protein family HMM PF01476; match to protein family HMM PF03734; LysM/ErfK/YbiS/YcfS/YnhG family protein 2069219 439851002259 SeD_A2154 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysM/ErfK/YbiS/YcfS/YnhG family protein YP_002215923.1 2068254 D 439851 CDS YP_002215924.1 198243112 complement(2069316..2069573) 1 NC_011205.1 identified by match to protein family HMM PF07338; hypothetical protein 2069573 439851002260 SeD_A2155 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215924.1 2069316 R 439851 CDS YP_002215925.1 198245827 2069815..2070450 1 NC_011205.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2070450 439851002261 SeD_A2156 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 TetR family transcriptional regulator YP_002215925.1 2069815 D 439851 CDS YP_002215926.1 198245344 complement(2070524..2071063) 1 NC_011205.1 identified by match to protein family HMM PF05433; hypothetical protein 2071063 439851002262 SeD_A2157 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215926.1 2070524 R 439851 CDS YP_002215927.1 198244583 complement(2071242..2072573) 1 NC_011205.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; NADH dehydrogenase 2072573 ndh 439851002263 ndh Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NADH dehydrogenase YP_002215927.1 2071242 R 439851 CDS YP_002215928.1 198244123 complement(2072801..2073343) 1 NC_011205.1 identified by match to protein family HMM PF05728; hypothetical protein 2073343 439851002264 SeD_A2159 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215928.1 2072801 R 439851 CDS YP_002215929.1 198243937 complement(2073368..2074393) 1 NC_011205.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 2074393 nagZ 439851002265 nagZ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 beta-hexosaminidase YP_002215929.1 2073368 R 439851 CDS YP_002215930.1 198243426 complement(2074404..2075228) 1 NC_011205.1 catalyzes the phosphorylation of thiamine to thiamine phosphate; thiamine kinase 2075228 thiK 439851002266 thiK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiamine kinase YP_002215930.1 2074404 R 439851 CDS YP_002215931.1 198242646 complement(2075209..2075847) 1 NC_011205.1 identified by match to protein family HMM TIGR02722; hypothetical protein 2075847 439851002267 SeD_A2162 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215931.1 2075209 R 439851 CDS YP_002215932.1 198242025 complement(2075861..2076235) 1 NC_011205.1 identified by match to protein family HMM PF07233; outer membrane lipoprotein 2076235 439851002268 SeD_A2163 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane lipoprotein YP_002215932.1 2075861 R 439851 CDS YP_002215933.1 198242761 complement(2076238..2076615) 1 NC_011205.1 identified by match to protein family HMM PF01230; purine nucleoside phosphoramidase 2076615 439851002269 SeD_A2164 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 purine nucleoside phosphoramidase YP_002215933.1 2076238 R 439851 CDS YP_002215934.1 198242073 2076939..2079113 1 NC_011205.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; ferric-rhodotorulic acid outer membrane transporter 2079113 439851002270 SeD_A2165 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ferric-rhodotorulic acid outer membrane transporter YP_002215934.1 2076939 D 439851 CDS YP_002215935.1 198244688 complement(2079198..2080631) 1 NC_011205.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunits IIBC 2080631 ptsG 439851002271 ptsG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system glucose-specific transporter subunits IIBC YP_002215935.1 2079198 R 439851 CDS YP_002215936.1 198244021 complement(2080926..2081723) 1 NC_011205.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; metallodependent hydrolase 2081723 439851002272 SeD_A2167 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 metallodependent hydrolase YP_002215936.1 2080926 R 439851 CDS YP_002215937.1 198245939 complement(2081734..2082738) 1 NC_011205.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 2082738 439851002273 SeD_A2168 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA polymerase III subunit delta' YP_002215937.1 2081734 R 439851 CDS YP_002215938.1 198245346 complement(2082735..2083376) 1 NC_011205.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 2083376 tmk 439851002274 tmk Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thymidylate kinase YP_002215938.1 2082735 R 439851 CDS YP_002215939.1 198242090 complement(2083366..2084388) 1 NC_011205.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein 2084388 439851002275 SeD_A2170 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215939.1 2083366 R 439851 CDS YP_002215940.1 198246126 complement(2084391..2085200) 1 NC_011205.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 2085200 439851002276 SeD_A2171 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-amino-4-deoxychorismate lyase YP_002215940.1 2084391 R 439851 CDS YP_002215941.1 198243151 complement(2085324..2086565) 1 NC_011205.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 2086565 fabF 439851002277 fabF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-oxoacyl-ACP synthase YP_002215941.1 2085324 R 439851 CDS YP_002215942.1 198242635 complement(2086651..2086887) 1 NC_011205.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2086887 acpP 439851002278 acpP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acyl carrier protein YP_002215942.1 2086651 R 439851 CDS YP_002215943.1 198245182 complement(2087043..2087777) 1 NC_011205.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2087777 fabG 439851002279 fabG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-ketoacyl-ACP reductase YP_002215943.1 2087043 R 439851 CDS YP_002215944.1 198245815 complement(2087790..2088719) 1 NC_011205.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 2088719 fabD 439851002280 fabD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 malonyl CoA-acyl carrier protein transacylase YP_002215944.1 2087790 R 439851 CDS YP_002215945.1 198242894 complement(2088735..2089688) 1 NC_011205.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 2089688 fabH 439851002281 fabH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-oxoacyl-ACP synthase YP_002215945.1 2088735 R 439851 CDS YP_002215946.1 198243550 complement(2089768..2090847) 1 NC_011205.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 2090847 plsX 439851002282 plsX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycerol-3-phosphate acyltransferase PlsX YP_002215946.1 2089768 R 439851 CDS YP_002215947.1 198245107 2090816..2091220 1 NC_011205.1 identified by glimmer; hypothetical protein 2091220 439851002283 SeD_A2178 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215947.1 2090816 D 439851 CDS YP_002215948.1 198244444 complement(2091206..2091727) 1 NC_011205.1 identified by match to protein family HMM PF02620; hypothetical protein 2091727 439851002284 SeD_A2179 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215948.1 2091206 R 439851 CDS YP_002215949.1 198245436 2091925..2092509 1 NC_011205.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 2092509 maf 439851002286 maf Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Maf-like protein YP_002215949.1 2091925 D 439851 CDS YP_002215950.1 198244234 complement(2092580..2092804) 1 NC_011205.1 hypothetical protein 2092804 439851002287 SeD_A2182 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215950.1 2092580 R 439851 CDS YP_002215951.1 198244450 complement(2093905..2094864) 1 NC_011205.1 catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; 23S rRNA pseudouridylate synthase C 2094864 439851002289 SeD_A2185 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 23S rRNA pseudouridylate synthase C YP_002215951.1 2093905 R 439851 CDS YP_002215952.1 198245804 2095438..2098644 1 NC_011205.1 bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase; ribonuclease E 2098644 rne 439851002290 rne Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonuclease E YP_002215952.1 2095438 D 439851 CDS YP_002215953.1 198242414 complement(2098901..2099854) 1 NC_011205.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes; flagellar hook-associated protein FlgL 2099854 flgL 439851002291 flgL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar hook-associated protein FlgL YP_002215953.1 2098901 R 439851 CDS YP_002215954.1 198241785 complement(2099869..2101530) 1 NC_011205.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 2101530 flgK 439851002292 flgK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar hook-associated protein FlgK YP_002215954.1 2099869 R 439851 CDS YP_002215955.1 198243617 complement(2101595..2102545) 1 NC_011205.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 2102545 flgJ 439851002293 flgJ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar rod assembly protein/muramidase FlgJ YP_002215955.1 2101595 R 439851 CDS YP_002215956.1 198243836 complement(2102545..2103642) 1 NC_011205.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 2103642 flgI 439851002294 flgI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar basal body P-ring protein YP_002215956.1 2102545 R 439851 CDS YP_002215957.1 198244937 complement(2103654..2104319) 1 NC_011205.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 2104319 flgH 439851002295 flgH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar basal body L-ring protein YP_002215957.1 2103654 R 439851 CDS YP_002215958.1 198244335 complement(2104407..2105189) 1 NC_011205.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 2105189 flgG 439851002296 flgG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar basal body rod protein FlgG YP_002215958.1 2104407 R 439851 CDS YP_002215959.1 198245943 complement(2105203..2105958) 1 NC_011205.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 2105958 flgF 439851002297 flgF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar basal body rod protein FlgF YP_002215959.1 2105203 R 439851 CDS YP_002215960.1 198245171 complement(2105979..2107190) 1 NC_011205.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 2107190 flgE 439851002298 flgE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar hook protein FlgE YP_002215960.1 2105979 R 439851 CDS YP_002215961.1 198243981 complement(2107217..2107915) 1 NC_011205.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 2107915 flgD 439851002299 flgD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar basal body rod modification protein YP_002215961.1 2107217 R 439851 CDS YP_002215962.1 198244048 complement(2107927..2108331) 1 NC_011205.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 2108331 flgC 439851002300 flgC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar basal body rod protein FlgC YP_002215962.1 2107927 R 439851 CDS YP_002215963.1 198242083 complement(2108335..2108751) 1 NC_011205.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal-body rod protein FlgB 2108751 flgB 439851002301 flgB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar basal-body rod protein FlgB YP_002215963.1 2108335 R 439851 CDS YP_002215964.1 198242724 2108908..2109567 1 NC_011205.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 2109567 flgA 439851002302 flgA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagellar basal body P-ring biosynthesis protein FlgA YP_002215964.1 2108908 D 439851 CDS YP_002215965.1 198244659 2109659..2109952 1 NC_011205.1 regulates the flagellar specific sigma28 transcription factor; anti-sigma28 factor FlgM 2109952 439851002303 SeD_A2200 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anti-sigma28 factor FlgM YP_002215965.1 2109659 D 439851 CDS YP_002215966.1 198245314 2109987..2110379 1 NC_011205.1 identified by match to protein family HMM PF05130; flagella synthesis protein FlgN 2110379 439851002304 SeD_A2201 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagella synthesis protein FlgN YP_002215966.1 2109987 D 439851 CDS YP_002215967.1 198244023 complement(2110461..2112035) 1 NC_011205.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 2112035 mviN 439851002305 mviN Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 integral membrane protein MviN YP_002215967.1 2110461 R 439851 CDS YP_002215968.1 198244638 complement(2112300..2113223) 1 NC_011205.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase family protein 2113223 439851002306 SeD_A2203 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxidoreductase family protein YP_002215968.1 2112300 R 439851 CDS YP_002215969.1 198243345 complement(2113225..2113872) 1 NC_011205.1 identified by match to protein family HMM PF04337; hypothetical protein 2113872 439851002307 SeD_A2204 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215969.1 2113225 R 439851 CDS YP_002215970.1 198243976 complement(2113908..2114492) 1 NC_011205.1 identified by match to protein family HMM PF00583; ribosomal-protein-S5-alanine N-acetyltransferase 2114492 439851002308 SeD_A2205 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribosomal-protein-S5-alanine N-acetyltransferase YP_002215970.1 2113908 R 439851 CDS YP_002215971.1 198243586 2114729..2115937 1 NC_011205.1 Confers resistance to norfloxacin and enoxacin; multidrug resistance protein MdtH 2115937 439851002309 SeD_A2206 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multidrug resistance protein MdtH YP_002215971.1 2114729 D 439851 CDS YP_002215972.1 198242930 2116001..2116648 1 NC_011205.1 cofactor involved in the reduction of disulfides; glutaredoxin 2 2116648 grxB 439851002310 grxB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutaredoxin 2 YP_002215972.1 2116001 D 439851 CDS YP_002215973.1 198246234 2116773..2117333 1 NC_011205.1 identified by match to protein family HMM PF07273; hypothetical protein 2117333 439851002311 SeD_A2208 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215973.1 2116773 D 439851 CDS YP_002215974.1 198244658 2117438..2118484 1 NC_011205.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 2118484 pyrC 439851002312 pyrC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dihydroorotase YP_002215974.1 2117438 D 439851 CDS YP_002215975.1 198244968 2118558..2118803 1 NC_011205.1 identified by match to protein family HMM PF06183; DNA damage-inducible protein I 2118803 439851002313 SeD_A2210 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA damage-inducible protein I YP_002215975.1 2118558 D 439851 CDS YP_002215976.1 198244341 2119090..2119347 1 NC_011205.1 BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; biofilm formation regulatory protein BssS 2119347 bssS 439851002314 bssS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 biofilm formation regulatory protein BssS YP_002215976.1 2119090 D 439851 CDS YP_002215977.1 198243040 2119460..2120578 1 NC_011205.1 catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase 2120578 solA 439851002315 solA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N-methyltryptophan oxidase YP_002215977.1 2119460 D 439851 CDS YP_002215978.1 198242670 2120619..2120732 1 NC_011205.1 hypothetical protein 2120732 439851002316 SeD_A2213 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215978.1 2120619 D 439851 CDS YP_002215979.1 198241806 complement(2120781..2120984) 1 NC_011205.1 hypothetical protein 2120984 439851002317 SeD_A2214 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215979.1 2120781 R 439851 CDS YP_002215980.1 198245910 2120995..2121567 1 NC_011205.1 identified by match to protein family HMM PF01292; hypothetical protein 2121567 439851002318 SeD_A2215 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215980.1 2120995 D 439851 CDS YP_002215981.1 198243744 2121564..2122139 1 NC_011205.1 identified by match to protein family HMM PF04264; hypothetical protein 2122139 439851002319 SeD_A2216 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215981.1 2121564 D 439851 CDS YP_002215982.1 198243375 complement(2122191..2123243) 1 NC_011205.1 identified by match to protein family HMM PF00581; hypothetical protein 2123243 439851002320 SeD_A2217 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215982.1 2122191 R 439851 CDS YP_002215983.1 198242211 2123463..2124383 1 NC_011205.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 2124383 439851002321 SeD_A2218 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipid A biosynthesis lauroyl acyltransferase YP_002215983.1 2123463 D 439851 CDS YP_002215984.1 198246143 2124538..2125752 1 NC_011205.1 Confers resistance to fosfomycin and deoxycholate; drug efflux system protein MdtG 2125752 439851002322 SeD_A2219 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 drug efflux system protein MdtG YP_002215984.1 2124538 D 439851 CDS YP_002215985.1 198245782 2125834..2126208 1 NC_011205.1 hypothetical protein 2126208 439851002323 SeD_A2220 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215985.1 2125834 D 439851 CDS YP_002215986.1 198245132 complement(2126209..2126412) 1 NC_011205.1 identified by match to protein family HMM PF07119; hypothetical protein 2126412 439851002324 SeD_A2221 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215986.1 2126209 R 439851 CDS YP_002215987.1 198244015 complement(2126510..2129053) 1 NC_011205.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 2129053 439851002325 SeD_A2222 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucosyltransferase MdoH YP_002215987.1 2126510 R 439851 CDS YP_002215988.1 198243682 complement(2129046..2130599) 1 NC_011205.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 2130599 mdoG 439851002326 mdoG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucan biosynthesis protein G YP_002215988.1 2129046 R 439851 CDS YP_002215989.1 198243049 2130853..2132007 1 NC_011205.1 required for the transfer of succinyl residues to the glucan backbone; glucans biosynthesis protein 2132007 mdoC 439851002327 mdoC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucans biosynthesis protein YP_002215989.1 2130853 D 439851 CDS YP_002215990.1 198242708 complement(2132024..2133328) 1 NC_011205.1 identified by match to protein family HMM PF00614; phopholipase D 2133328 439851002328 SeD_A2225 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phopholipase D YP_002215990.1 2132024 R 439851 CDS YP_002215991.1 198245367 complement(2133447..2133986) 1 NC_011205.1 identified by match to protein family HMM PF01661; hypothetical protein 2133986 439851002329 SeD_A2226 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215991.1 2133447 R 439851 CDS YP_002215992.1 198245830 complement(2134073..2134393) 1 NC_011205.1 hypothetical protein 2134393 439851002330 SeD_A2227 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002215992.1 2134073 R 439851 CDS YP_002215993.1 198242117 complement(2134524..2134850) 1 NC_011205.1 involved in autoagglutination of curliated cells; not involved in production of curli fibers; autoagglutination protein 2134850 csgC 439851002331 csgC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 autoagglutination protein YP_002215993.1 2134524 R 439851 CDS YP_002215994.1 198242609 complement(2134912..2135367) 1 NC_011205.1 identified by match to protein family HMM PF07012; cryptic curlin major subunit 2135367 439851002332 SeD_A2229 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cryptic curlin major subunit YP_002215994.1 2134912 R 439851 CDS YP_002215995.1 198243106 complement(2135409..2135864) 1 NC_011205.1 CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; curlin minor subunit 2135864 csgB 439851002333 csgB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 curlin minor subunit YP_002215995.1 2135409 R 439851 CDS YP_002215996.1 198243879 2136619..2137269 1 NC_011205.1 activates the csgBA and csgDEFG operons involved in biofilm formation; DNA-binding transcriptional regulator CsgD 2137269 csgD 439851002334 csgD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator CsgD YP_002215996.1 2136619 D 439851 CDS YP_002215997.1 198244362 2137274..2137669 1 NC_011205.1 chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE 2137669 439851002335 SeD_A2232 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 curli assembly protein CsgE YP_002215997.1 2137274 D 439851 CDS YP_002215998.1 198245090 2137696..2138112 1 NC_011205.1 nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgF 2138112 439851002336 SeD_A2233 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 curli assembly protein CsgF YP_002215998.1 2137696 D 439851 CDS YP_002215999.1 198245567 2138139..2138972 1 NC_011205.1 identified by match to protein family HMM PF03783; curli production assembly/transport component CsgG 2138972 439851002337 SeD_A2234 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 curli production assembly/transport component CsgG YP_002215999.1 2138139 D 439851 CDS YP_002216000.1 198245202 complement(2139011..2139523) 1 NC_011205.1 identified by match to protein family HMM PF06496; hypothetical protein 2139523 439851002338 SeD_A2235 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216000.1 2139011 R 439851 CDS YP_002216001.1 198242227 complement(2139594..2140148) 1 NC_011205.1 identified by match to protein family HMM PF06192; chaperone, TorD family 2140148 439851002339 SeD_A2236 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chaperone, TorD family YP_002216001.1 2139594 R 439851 CDS YP_002216002.1 198244185 complement(2140172..2140909) 1 NC_011205.1 identified by match to protein family HMM PF02811; hydrolase 2140909 439851002340 SeD_A2237 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrolase YP_002216002.1 2140172 R 439851 CDS YP_002216003.1 198244809 complement(2140994..2141932) 1 NC_011205.1 identified by match to protein family HMM PF02826; 2-hydroxyacid dehydrogenase YcdW 2141932 439851002341 SeD_A2239 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-hydroxyacid dehydrogenase YcdW YP_002216003.1 2140994 R 439851 CDS YP_002216004.1 198243384 2141931..2142095 1 NC_011205.1 identified by glimmer; hypothetical protein 2142095 439851002342 SeD_A2238 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216004.1 2141931 D 439851 CDS YP_002216005.1 198243821 2143127..2143276 1 NC_011205.1 transposase 2143276 439851002344 SeD_A2241 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transposase YP_002216005.1 2143127 D 439851 CDS YP_002216006.1 198242164 complement(2143449..2144816) 1 NC_011205.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; transposase family protein 2144816 439851002345 SeD_A2242 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transposase family protein YP_002216006.1 2143449 R 439851 CDS YP_002216007.1 198242784 complement(2144933..2145751) 1 NC_011205.1 identified by glimmer; hypothetical protein 2145751 439851002346 SeD_A2243 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216007.1 2144933 R 439851 CDS YP_002216008.1 198245805 complement(2147094..2147315) 1 NC_011205.1 identified by match to protein family HMM PF02796; hypothetical protein 2147315 439851002348 SeD_A2245 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216008.1 2147094 R 439851 CDS YP_002216009.1 198244186 2147528..2148535 1 NC_011205.1 hypothetical protein 2148535 439851002349 SeD_A2246 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216009.1 2147528 D 439851 CDS YP_002216010.1 198242477 complement(2148536..2148685) 1 NC_011205.1 gp21 2148685 439851002350 SeD_A2247 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gp21 YP_002216010.1 2148536 R 439851 CDS YP_002216011.1 198243011 complement(2148820..2149389) 1 NC_011205.1 identified by match to protein family HMM PF02413; tail fiber assembly protein 2149389 439851002351 SeD_A2248 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tail fiber assembly protein YP_002216011.1 2148820 R 439851 CDS YP_002216012.1 198243482 complement(2149389..2150951) 1 NC_011205.1 tail protein 2150951 439851002352 SeD_A2249 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tail protein YP_002216012.1 2149389 R 439851 CDS YP_002216013.1 198245600 complement(2150938..2151525) 1 NC_011205.1 tail protein 2151525 439851002353 SeD_A2250 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tail protein YP_002216013.1 2150938 R 439851 CDS YP_002216014.1 198246233 complement(2151528..2152607) 1 NC_011205.1 identified by match to protein family HMM PF04865; tail protein 2152607 439851002354 SeD_A2251 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tail protein YP_002216014.1 2151528 R 439851 CDS YP_002216015.1 198241878 complement(2152600..2153013) 1 NC_011205.1 identified by match to protein family HMM PF07409; phage protein GP46 2153013 439851002355 SeD_A2252 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage protein GP46 YP_002216015.1 2152600 R 439851 CDS YP_002216016.1 198242337 complement(2153018..2153551) 1 NC_011205.1 identified by match to protein family HMM PF06890; match to protein family HMM TIGR01644; bacteriophage Mu Gp45 protein 2153551 439851002356 SeD_A2253 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bacteriophage Mu Gp45 protein YP_002216016.1 2153018 R 439851 CDS YP_002216017.1 198243666 complement(2154605..2155945) 1 NC_011205.1 identified by match to protein family HMM PF07157; tail/DNA circulation protein 2155945 439851002358 SeD_A2255 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tail/DNA circulation protein YP_002216017.1 2154605 R 439851 CDS YP_002216018.1 198244985 complement(2155979..2157907) 1 NC_011205.1 identified by match to protein family HMM TIGR01760; tail protein 2157907 439851002359 SeD_A2256 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tail protein YP_002216018.1 2155979 R 439851 CDS YP_002216019.1 198244939 complement(2157992..2158318) 1 NC_011205.1 hypothetical protein 2158318 439851002360 SeD_A2257 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216019.1 2157992 R 439851 CDS YP_002216020.1 198245421 complement(2158315..2158671) 1 NC_011205.1 tail tube protein 2158671 439851002361 SeD_A2258 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tail tube protein YP_002216020.1 2158315 R 439851 CDS YP_002216021.1 198246162 complement(2158671..2160167) 1 NC_011205.1 identified by match to protein family HMM PF06274; bacteriophage Mu tail sheath protein 2160167 439851002362 SeD_A2259 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bacteriophage Mu tail sheath protein YP_002216021.1 2158671 R 439851 CDS YP_002216022.1 198243440 complement(2160157..2160321) 1 NC_011205.1 hypothetical protein 2160321 439851002363 SeD_A2260 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216022.1 2160157 R 439851 CDS YP_002216023.1 198243886 complement(2160325..2160885) 1 NC_011205.1 hypothetical protein 2160885 439851002364 SeD_A2261 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216023.1 2160325 R 439851 CDS YP_002216024.1 198244165 complement(2160882..2161394) 1 NC_011205.1 hypothetical protein 2161394 439851002365 SeD_A2262 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216024.1 2160882 R 439851 CDS YP_002216025.1 198243845 complement(2161366..2161770) 1 NC_011205.1 identified by match to protein family HMM TIGR01563; phage head-tail adaptor 2161770 439851002366 SeD_A2263 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage head-tail adaptor YP_002216025.1 2161366 R 439851 CDS YP_002216026.1 198245855 complement(2161767..2162090) 1 NC_011205.1 hypothetical protein 2162090 439851002367 SeD_A2264 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216026.1 2161767 R 439851 CDS YP_002216027.1 198244267 complement(2162093..2162293) 1 NC_011205.1 hypothetical protein 2162293 439851002368 SeD_A2265 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216027.1 2162093 R 439851 CDS YP_002216028.1 198242419 complement(2162344..2163549) 1 NC_011205.1 identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554; phage major capsid protein, HK97 family 2163549 439851002369 SeD_A2266 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage major capsid protein, HK97 family YP_002216028.1 2162344 R 439851 CDS YP_002216029.1 198246051 complement(2164192..2165433) 1 NC_011205.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537; phage portal protein, HK97 family 2165433 439851002371 SeD_A2269 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage portal protein, HK97 family YP_002216029.1 2164192 R 439851 CDS YP_002216030.1 198243679 complement(2165433..2165615) 1 NC_011205.1 hypothetical protein 2165615 439851002372 SeD_A2270 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216030.1 2165433 R 439851 CDS YP_002216031.1 198243032 complement(2165627..2167360) 1 NC_011205.1 identified by match to protein family HMM PF03354; phage terminase, large subunit 2167360 439851002373 SeD_A2271 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage terminase, large subunit YP_002216031.1 2165627 R 439851 CDS YP_002216032.1 198242434 complement(2167357..2167851) 1 NC_011205.1 identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558; phage terminase, small subunit, P27 family 2167851 439851002374 SeD_A2272 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage terminase, small subunit, P27 family YP_002216032.1 2167357 R 439851 CDS YP_002216033.1 198241798 complement(2167978..2168328) 1 NC_011205.1 identified by match to protein family HMM PF01844; HNH endonuclease 2168328 439851002375 SeD_A2273 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 HNH endonuclease YP_002216033.1 2167978 R 439851 CDS YP_002216034.1 198246248 complement(2168456..2168755) 1 NC_011205.1 identified by glimmer; hypothetical protein 2168755 439851002376 SeD_A2274 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216034.1 2168456 R 439851 CDS YP_002216035.1 198245465 complement(2169416..2169808) 1 NC_011205.1 Rz lytic protein 2169808 439851002377 SeD_A2275 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Rz lytic protein YP_002216035.1 2169416 R 439851 CDS YP_002216036.1 198244978 complement(2169792..2170268) 1 NC_011205.1 identified by match to protein family HMM PF00959; lysozyme 2170268 439851002378 SeD_A2276 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lysozyme YP_002216036.1 2169792 R 439851 CDS YP_002216037.1 198243079 complement(2170272..2170619) 1 NC_011205.1 identified by match to protein family HMM PF05106; match to protein family HMM TIGR01594; phage holin, lambda family 2170619 439851002379 SeD_A2277 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage holin, lambda family YP_002216037.1 2170272 R 439851 CDS YP_002216038.1 198242728 complement(2171282..2172034) 1 NC_011205.1 identified by match to protein family HMM PF03589; antitermination protein 2172034 439851002380 SeD_A2278 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 antitermination protein YP_002216038.1 2171282 R 439851 CDS YP_002216039.1 198241847 complement(2172048..2173043) 1 NC_011205.1 identified by match to protein family HMM PF06914; hypothetical protein 2173043 439851002381 SeD_A2279 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216039.1 2172048 R 439851 CDS YP_002216040.1 198244371 complement(2173045..2173905) 1 NC_011205.1 identified by match to protein family HMM PF04383; KilA-N domain-containing protein 2173905 439851002382 SeD_A2280 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 KilA-N domain-containing protein YP_002216040.1 2173045 R 439851 CDS YP_002216041.1 198246024 complement(2173922..2174311) 1 NC_011205.1 identified by match to protein family HMM PF05866; holiday-junction resolvase 2174311 439851002383 SeD_A2281 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 holiday-junction resolvase YP_002216041.1 2173922 R 439851 CDS YP_002216042.1 198243724 complement(2174320..2175201) 1 NC_011205.1 identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571; retron adenine methylase 2175201 439851002384 SeD_A2282 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 retron adenine methylase YP_002216042.1 2174320 R 439851 CDS YP_002216043.1 198243045 complement(2175198..2175671) 1 NC_011205.1 hypothetical protein 2175671 439851002385 SeD_A2283 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216043.1 2175198 R 439851 CDS YP_002216044.1 198241787 complement(2175668..2176642) 1 NC_011205.1 identified by match to protein family HMM TIGR02220; hypothetical protein 2176642 439851002386 SeD_A2284 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216044.1 2175668 R 439851 CDS YP_002216045.1 198243932 complement(2176639..2176863) 1 NC_011205.1 hypothetical protein 2176863 439851002387 SeD_A2285 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216045.1 2176639 R 439851 CDS YP_002216046.1 198245401 complement(2176860..2178002) 1 NC_011205.1 identified by match to protein family HMM TIGR02681; antirepressor 2178002 439851002388 SeD_A2286 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 antirepressor YP_002216046.1 2176860 R 439851 CDS YP_002216047.1 198245757 complement(2177999..2178553) 1 NC_011205.1 hypothetical protein 2178553 439851002389 SeD_A2287 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216047.1 2177999 R 439851 CDS YP_002216048.1 198243067 complement(2178582..2178806) 1 NC_011205.1 identified by match to protein family HMM PF01381; hypothetical protein 2178806 439851002390 SeD_A2288 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216048.1 2178582 R 439851 CDS YP_002216049.1 198242482 2179917..2180168 1 NC_011205.1 identified by glimmer; hypothetical protein 2180168 439851002392 SeD_A2290 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216049.1 2179917 D 439851 CDS YP_002216050.1 198241781 complement(2180363..2180608) 1 NC_011205.1 identified by glimmer; hypothetical protein 2180608 439851002393 SeD_A2291 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216050.1 2180363 R 439851 CDS YP_002216051.1 198243702 complement(2180598..2181161) 1 NC_011205.1 hypothetical protein 2181161 439851002394 SeD_A2293 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216051.1 2180598 R 439851 CDS YP_002216052.1 198243051 2181160..2181516 1 NC_011205.1 hypothetical protein 2181516 439851002395 SeD_A2292 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216052.1 2181160 D 439851 CDS YP_002216053.1 198244913 2181574..2182401 1 NC_011205.1 hypothetical protein 2182401 439851002396 SeD_A2294 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216053.1 2181574 D 439851 CDS YP_002216054.1 198244337 2182538..2183077 1 NC_011205.1 hypothetical protein 2183077 439851002397 SeD_A2295 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216054.1 2182538 D 439851 CDS YP_002216055.1 198245699 2183148..2183885 1 NC_011205.1 hypothetical protein 2183885 439851002398 SeD_A2296 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216055.1 2183148 D 439851 CDS YP_002216056.1 198241917 2183882..2184358 1 NC_011205.1 DNA N-4 cytosine methyltransferase M.NgoMXV 2184358 439851002399 SeD_A2297 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA N-4 cytosine methyltransferase M.NgoMXV YP_002216056.1 2183882 D 439851 CDS YP_002216057.1 198245994 2184362..2185111 1 NC_011205.1 hypothetical protein 2185111 439851002400 SeD_A2298 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216057.1 2184362 D 439851 CDS YP_002216058.1 198245664 2185108..2185677 1 NC_011205.1 endodeoxyribonuclease 2185677 439851002401 SeD_A2299 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 endodeoxyribonuclease YP_002216058.1 2185108 D 439851 CDS YP_002216059.1 198246170 2185717..2185944 1 NC_011205.1 hypothetical protein 2185944 439851002402 SeD_A2300 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216059.1 2185717 D 439851 CDS YP_002216060.1 198245719 2185946..2186935 1 NC_011205.1 identified by match to protein family HMM PF00589; integrase protein 2186935 439851002403 SeD_A2301 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 integrase protein YP_002216060.1 2185946 D 439851 CDS YP_002216061.1 198243017 2187227..2188024 1 NC_011205.1 identified by match to protein family HMM PF06167; hypothetical protein 2188024 439851002405 SeD_A2303 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216061.1 2187227 D 439851 CDS YP_002216062.1 198242409 2188380..2189654 1 NC_011205.1 identified by match to protein family HMM PF00589; integrase 2189654 439851002407 SeD_A2305 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 integrase YP_002216062.1 2188380 D 439851 CDS YP_002216063.1 198243616 complement(2189726..2189977) 1 NC_011205.1 hypothetical protein 2189977 439851002408 SeD_A2306 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216063.1 2189726 R 439851 CDS YP_002216064.1 198243094 complement(2190456..2190953) 1 NC_011205.1 identified by glimmer; hypothetical protein 2190953 439851002409 SeD_A2307 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216064.1 2190456 R 439851 CDS YP_002216065.1 198244856 complement(2191315..2191878) 1 NC_011205.1 identified by glimmer; hypothetical protein 2191878 439851002410 SeD_A2308 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216065.1 2191315 R 439851 CDS YP_002216066.1 198242664 complement(2191945..2192058) 1 NC_011205.1 identified by glimmer; hypothetical protein 2192058 439851002411 SeD_A2309 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216066.1 2191945 R 439851 CDS YP_002216067.1 198245822 2192289..2193170 1 NC_011205.1 TIR protein 2193170 439851002412 SeD_A2310 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 TIR protein YP_002216067.1 2192289 D 439851 CDS YP_008169833.1 528879904 complement(2193744..2195582) 1 NC_011205.1 pilin 2195582 439851002413 SeD_A2311 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pilin YP_008169833.1 2193744 R 439851 CDS YP_002216068.1 198244666 complement(2195598..2196155) 1 NC_011205.1 identified by match to protein family HMM PF07963; match to protein family HMM PF08805; match to protein family HMM TIGR02532; type IV pilin protein 2196155 439851002414 SeD_A2312 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type IV pilin protein YP_002216068.1 2195598 R 439851 CDS YP_002216069.1 198245142 complement(2196563..2196868) 1 NC_011205.1 hypothetical protein 2196868 439851002415 SeD_A2313 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216069.1 2196563 R 439851 CDS YP_002216070.1 198245873 2197505..2199025 1 NC_011205.1 identified by match to protein family HMM PF03389; MobA/MobL family protein 2199025 439851002416 SeD_A2314 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 MobA/MobL family protein YP_002216070.1 2197505 D 439851 CDS YP_002216071.1 198242492 complement(2199049..2199939) 1 NC_011205.1 hypothetical protein 2199939 439851002417 SeD_A2315 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216071.1 2199049 R 439851 CDS YP_002216072.1 198242716 complement(2200125..2200304) 1 NC_011205.1 hypothetical protein 2200304 439851002418 SeD_A2316 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216072.1 2200125 R 439851 CDS YP_002216073.1 198243189 complement(2200399..2200929) 1 NC_011205.1 hypothetical protein 2200929 439851002419 SeD_A2317 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216073.1 2200399 R 439851 CDS YP_002216074.1 198243960 complement(2201017..2201154) 1 NC_011205.1 hypothetical protein 2201154 439851002420 SeD_A2318 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216074.1 2201017 R 439851 CDS YP_002216075.1 198245496 2201364..2201837 1 NC_011205.1 hypothetical protein 2201837 439851002421 SeD_A2319 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216075.1 2201364 D 439851 CDS YP_002216076.1 198246146 2202080..2202247 1 NC_011205.1 hypothetical protein 2202247 439851002422 SeD_A2320 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216076.1 2202080 D 439851 CDS YP_002216077.1 198241947 complement(2202325..2203935) 1 NC_011205.1 identified by glimmer; hypothetical protein 2203935 439851002423 SeD_A2321 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216077.1 2202325 R 439851 CDS YP_002216078.1 198242591 complement(2203987..2204949) 1 NC_011205.1 hypothetical protein 2204949 439851002424 SeD_A2322 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216078.1 2203987 R 439851 CDS YP_002216079.1 198245362 2205189..2205329 1 NC_011205.1 identified by glimmer; hypothetical protein 2205329 439851002425 SeD_A2323 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216079.1 2205189 D 439851 CDS YP_002216080.1 198242067 2205707..2205847 1 NC_011205.1 identified by glimmer; hypothetical protein 2205847 439851002427 SeD_A2324 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216080.1 2205707 D 439851 CDS YP_002216081.1 198242485 2207105..2207839 1 NC_011205.1 DNA-binding protein 2207839 439851002428 SeD_A2326 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding protein YP_002216081.1 2207105 D 439851 CDS YP_002216082.1 198244003 2207867..2208658 1 NC_011205.1 hypothetical protein 2208658 439851002429 SeD_A2327 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216082.1 2207867 D 439851 CDS YP_002216083.1 198242022 2209041..2209223 1 NC_011205.1 hypothetical protein 2209223 439851002430 SeD_A2328 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216083.1 2209041 D 439851 CDS YP_002216084.1 198242927 2209384..2209788 1 NC_011205.1 identified by match to protein family HMM PF00816; H-NS histone family protein 2209788 439851002431 SeD_A2329 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 H-NS histone family protein YP_002216084.1 2209384 D 439851 CDS YP_002216085.1 198244803 2209891..2210022 1 NC_011205.1 identified by glimmer; hypothetical protein 2210022 439851002432 SeD_A2330 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216085.1 2209891 D 439851 CDS YP_002216086.1 198241973 complement(2210817..2212088) 1 NC_011205.1 hypothetical protein 2212088 439851002433 SeD_A2331 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216086.1 2210817 R 439851 CDS YP_002216087.1 198242797 complement(2212675..2212965) 1 NC_011205.1 hypothetical protein 2212965 439851002435 SeD_A2333 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216087.1 2212675 R 439851 CDS YP_002216088.1 198242174 complement(2213047..2213265) 1 NC_011205.1 identified by match to protein family HMM PF05930; hypothetical protein 2213265 439851002436 SeD_A2334 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216088.1 2213047 R 439851 CDS YP_002216089.1 198246181 complement(2213416..2214291) 1 NC_011205.1 hypothetical protein 2214291 439851002437 SeD_A2335 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216089.1 2213416 R 439851 CDS YP_002216090.1 198245123 2214834..2215358 1 NC_011205.1 endoprotease 2215358 439851002438 SeD_A2336 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 endoprotease YP_002216090.1 2214834 D 439851 CDS YP_002216091.1 198244757 complement(2215407..2215532) 1 NC_011205.1 hypothetical protein 2215532 439851002439 SeD_A2337 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216091.1 2215407 R 439851 CDS YP_002216092.1 198244754 2216872..2219040 1 NC_011205.1 identified by match to protein family HMM PF07661; match to protein family HMM PF08238; tetratricopeptide repeat protein 2219040 439851002441 SeD_A2339 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tetratricopeptide repeat protein YP_002216092.1 2216872 D 439851 CDS YP_002216093.1 198242277 2219097..2220827 1 NC_011205.1 hypothetical protein 2220827 439851002442 SeD_A2340 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216093.1 2219097 D 439851 CDS YP_002216094.1 198245998 2220858..2220992 1 NC_011205.1 hypothetical protein 2220992 439851002443 SeD_A2341 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216094.1 2220858 D 439851 CDS YP_002216095.1 198242902 2221037..2221210 1 NC_011205.1 hypothetical protein 2221210 439851002444 SeD_A2342 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216095.1 2221037 D 439851 CDS YP_002216096.1 198242839 2221302..2221451 1 NC_011205.1 identified by glimmer; hypothetical protein 2221451 439851002445 SeD_A2343 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216096.1 2221302 D 439851 CDS YP_002216097.1 198244603 complement(2221732..2223186) 1 NC_011205.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 2223186 amn 439851002446 amn Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 AMP nucleosidase YP_002216097.1 2221732 R 439851 CDS YP_002216098.1 198245848 2223271..2223393 1 NC_011205.1 hypothetical protein 2223393 439851002447 SeD_A2345 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216098.1 2223271 D 439851 CDS YP_002216099.1 198244095 complement(2223382..2223708) 1 NC_011205.1 identified by match to protein family HMM PF07377; hypothetical protein 2223708 439851002448 SeD_A2346 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216099.1 2223382 R 439851 CDS YP_002216100.1 198244687 complement(2226719..2227648) 1 NC_011205.1 identified by match to protein family HMM PF03734; hypothetical protein 2227648 439851002452 SeD_A2350 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216100.1 2226719 R 439851 CDS YP_002216101.1 198245450 complement(2227726..2228796) 1 NC_011205.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2228796 cobT 439851002453 cobT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_002216101.1 2227726 R 439851 CDS YP_002216102.1 198243864 complement(2228823..2229566) 1 NC_011205.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 2229566 cobS 439851002454 cobS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cobalamin synthase YP_002216102.1 2228823 R 439851 CDS YP_002216103.1 198242153 complement(2229563..2230108) 1 NC_011205.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase 2230108 cobU 439851002455 cobU Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 adenosylcobinamide kinase YP_002216103.1 2229563 R 439851 CDS YP_002216104.1 198243321 complement(2230105..2231625) 1 NC_011205.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 2231625 cobQ 439851002456 cobQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cobyric acid synthase YP_002216104.1 2230105 R 439851 CDS YP_002216105.1 198243519 complement(2231622..2232437) 1 NC_011205.1 with CbiNQ forms the ABC transporter for cobalt import; cobalt transporter ATP-binding subunit 2232437 cbiO 439851002457 cbiO Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cobalt transporter ATP-binding subunit YP_002216105.1 2231622 R 439851 CDS YP_002216106.1 198244017 complement(2232446..2233123) 1 NC_011205.1 identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454; cobalt ABC transporter permease CbiQ 2233123 cbiQ 439851002458 cbiQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cobalt ABC transporter permease CbiQ YP_002216106.1 2232446 R 439851 CDS YP_002216107.1 198244613 complement(2233110..2233391) 1 NC_011205.1 periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN 2233391 439851002459 SeD_A2357 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cobalt transport protein CbiN YP_002216107.1 2233110 R 439851 CDS YP_002216108.1 198245242 complement(2233393..2234130) 1 NC_011205.1 catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 2234130 cbiM 439851002460 cbiM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cobalt transport protein CbiM YP_002216108.1 2233393 R 439851 CDS YP_002216109.1 198245877 complement(2234127..2234840) 1 NC_011205.1 catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase 2234840 cobI 439851002461 cobI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cobalt-precorrin-2 C(20)-methyltransferase YP_002216109.1 2234127 R 439851 CDS YP_002216110.1 198243762 complement(2234837..2235631) 1 NC_011205.1 identified by match to protein family HMM PF06180; sirohydrochlorin cobaltochelatase 2235631 439851002462 SeD_A2360 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sirohydrochlorin cobaltochelatase YP_002216110.1 2234837 R 439851 CDS YP_002216111.1 198245426 complement(2235634..2236425) 1 NC_011205.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 2236425 cobK 439851002463 cobK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cobalt-precorrin-6x reductase YP_002216111.1 2235634 R 439851 CDS YP_002216112.1 198241889 complement(2236422..2237147) 1 NC_011205.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; precorrin-3B C17-methyltransferase 2237147 cobJ 439851002464 cobJ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 precorrin-3B C17-methyltransferase YP_002216112.1 2236422 R 439851 CDS YP_002216113.1 198242524 complement(2237147..2238202) 1 NC_011205.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG 2238202 439851002465 SeD_A2363 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cobalamin biosynthesis protein CbiG YP_002216113.1 2237147 R 439851 CDS YP_002216114.1 198242889 complement(2238183..2238956) 1 NC_011205.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C11-methyltransferase 2238956 cobM 439851002466 cobM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 precorrin-4 C11-methyltransferase YP_002216114.1 2238183 R 439851 CDS YP_002216115.1 198243672 complement(2238940..2239518) 1 NC_011205.1 catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; cobalt-precorrin-6Y C(15)-methyltransferase 2239518 439851002467 SeD_A2365 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cobalt-precorrin-6Y C(15)-methyltransferase YP_002216115.1 2238940 R 439851 CDS YP_002216116.1 198245871 complement(2239508..2240113) 1 NC_011205.1 catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; cobalt-precorrin-6Y C(5)-methyltransferase 2240113 cbiE 439851002468 cbiE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cobalt-precorrin-6Y C(5)-methyltransferase YP_002216116.1 2239508 R 439851 CDS YP_002216117.1 198244958 complement(2240107..2241246) 1 NC_011205.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 2241246 cbiD 439851002469 cbiD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cobalt-precorrin-6A synthase YP_002216117.1 2240107 R 439851 CDS YP_002216118.1 198245681 complement(2241246..2241878) 1 NC_011205.1 catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin; cobalt-precorrin-8X methylmutase 2241878 cbiC 439851002470 cbiC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cobalt-precorrin-8X methylmutase YP_002216118.1 2241246 R 439851 CDS YP_002216119.1 198246159 complement(2241889..2242848) 1 NC_011205.1 CobD; CbiB in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 2242848 cbiB 439851002471 cbiB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cobalamin biosynthesis protein YP_002216119.1 2241889 R 439851 CDS YP_002216120.1 198245110 complement(2242845..2244224) 1 NC_011205.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 2244224 cobB 439851002472 cobB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cobyrinic acid a,c-diamide synthase YP_002216120.1 2242845 R 439851 CDS YP_002216121.1 198244604 complement(2244822..2245733) 1 NC_011205.1 identified by match to protein family HMM PF00165; regulatory protein PocR 2245733 439851002473 SeD_A2372 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 regulatory protein PocR YP_002216121.1 2244822 R 439851 CDS YP_002216122.1 198243781 complement(2245950..2246744) 1 NC_011205.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; propanediol diffusion facilitator 2246744 439851002474 SeD_A2373 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 propanediol diffusion facilitator YP_002216122.1 2245950 R 439851 CDS YP_002216123.1 198243249 2247269..2247553 1 NC_011205.1 identified by match to protein family HMM PF00936; propanediol utilization protein PduA 2247553 pduA 439851002475 pduA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 propanediol utilization protein PduA YP_002216123.1 2247269 D 439851 CDS YP_002216124.1 198245658 2247550..2248362 1 NC_011205.1 identified by match to protein family HMM PF00936; propanediol utilization protein PduB 2248362 439851002476 SeD_A2375 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 propanediol utilization protein PduB YP_002216124.1 2247550 D 439851 CDS YP_002216125.1 198242610 2248381..2250045 1 NC_011205.1 identified by match to protein family HMM PF02286; propanediol utilization dehydratase, large subunit 2250045 pduC 439851002477 pduC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 propanediol utilization dehydratase, large subunit YP_002216125.1 2248381 D 439851 CDS YP_002216126.1 198244113 2250056..2250730 1 NC_011205.1 identified by match to protein family HMM PF02288; propanediol utilization: dehydratase, medium subunit 2250730 439851002478 SeD_A2377 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 propanediol utilization: dehydratase, medium subunit YP_002216126.1 2250056 D 439851 CDS YP_002216127.1 198246168 2250745..2251266 1 NC_011205.1 identified by match to protein family HMM PF02287; propanediol dehydratase small subunit 2251266 439851002479 SeD_A2378 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 propanediol dehydratase small subunit YP_002216127.1 2250745 D 439851 CDS YP_002216128.1 198242248 2251276..2253108 1 NC_011205.1 identified by match to protein family HMM PF08841; glycerol dehydratase reactivation factor large subunit 2253108 439851002480 SeD_A2379 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycerol dehydratase reactivation factor large subunit YP_002216128.1 2251276 D 439851 CDS YP_002216129.1 198244009 2253098..2253448 1 NC_011205.1 propanediol dehydratase reactivation protein 2253448 439851002481 SeD_A2380 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 propanediol dehydratase reactivation protein YP_002216129.1 2253098 D 439851 CDS YP_002216130.1 198245331 2253467..2253742 1 NC_011205.1 identified by match to protein family HMM PF00936; propanediol utilization protein PduJ 2253742 439851002482 SeD_A2381 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 propanediol utilization protein PduJ YP_002216130.1 2253467 D 439851 CDS YP_002216131.1 198242410 2253767..2254228 1 NC_011205.1 identified by match to protein family HMM PF00936; propanediol utilization protein 2254228 439851002483 SeD_A2382 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 propanediol utilization protein YP_002216131.1 2253767 D 439851 CDS YP_002216132.1 198243589 2254228..2254860 1 NC_011205.1 identified by match to protein family HMM PF06130; propanediol utilization 2254860 439851002484 SeD_A2383 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 propanediol utilization YP_002216132.1 2254228 D 439851 CDS YP_002216133.1 198245027 2254857..2255348 1 NC_011205.1 propanediol utilization 2255348 439851002485 SeD_A2384 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 propanediol utilization YP_002216133.1 2254857 D 439851 CDS YP_002216134.1 198242569 2255352..2255627 1 NC_011205.1 identified by match to protein family HMM PF03319; propanediol utilization protein 2255627 439851002486 SeD_A2385 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 propanediol utilization protein YP_002216134.1 2255352 D 439851 CDS YP_002216135.1 198241779 2255637..2256647 1 NC_011205.1 identified by match to protein family HMM PF01923; match to protein family HMM PF03928; match to protein family HMM TIGR00636; hypothetical protein 2256647 439851002487 SeD_A2386 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216135.1 2255637 D 439851 CDS YP_002216136.1 198246036 2256644..2258038 1 NC_011205.1 identified by match to protein family HMM PF00171; ethanolamine utilization protein EutE 2258038 439851002488 SeD_A2387 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ethanolamine utilization protein EutE YP_002216136.1 2256644 D 439851 CDS YP_002216137.1 198245287 2258050..2259162 1 NC_011205.1 identified by match to protein family HMM PF00465; propanediol utilization: propanol dehydrogenase 2259162 439851002489 SeD_A2388 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 propanediol utilization: propanol dehydrogenase YP_002216137.1 2258050 D 439851 CDS YP_002216138.1 198245042 2259159..2260514 1 NC_011205.1 identified by match to protein family HMM PF01512; polyhedral body protein 2260514 439851002490 SeD_A2389 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 polyhedral body protein YP_002216138.1 2259159 D 439851 CDS YP_002216139.1 198244571 2260517..2261071 1 NC_011205.1 identified by match to protein family HMM PF00936; polyhedral body protein 2261071 439851002491 SeD_A2390 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 polyhedral body protein YP_002216139.1 2260517 D 439851 CDS YP_002216140.1 198242998 2261098..2261421 1 NC_011205.1 identified by match to protein family HMM PF00936; propanediol utilization protein PduU 2261421 439851002492 SeD_A2391 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 propanediol utilization protein PduU YP_002216140.1 2261098 D 439851 CDS YP_002216141.1 198245515 2261426..2261878 1 NC_011205.1 identified by match to protein family HMM TIGR02528; ethanolamine utilization protein, EutP 2261878 eutP 439851002493 eutP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ethanolamine utilization protein, EutP YP_002216141.1 2261426 D 439851 CDS YP_002216142.1 198243141 2261863..2263077 1 NC_011205.1 involved in coenzyme B(12)-dependent 1, 2-propanediol degradation; important for the synthesis of propionyl coenzyme A during growth on 1,2-propanediol; propionate kinase 2263077 ackA 439851002494 ackA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 propionate kinase YP_002216142.1 2261863 D 439851 CDS YP_002216143.1 198243668 2263171..2264037 1 NC_011205.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; propanediol utilization 2264037 439851002495 SeD_A2394 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 propanediol utilization YP_002216143.1 2263171 D 439851 CDS YP_002216144.1 198241900 complement(2264071..2264406) 1 NC_011205.1 identified by match to protein family HMM PF04363; hypothetical protein 2264406 439851002496 SeD_A2395 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216144.1 2264071 R 439851 CDS YP_002216145.1 198242386 complement(2264651..2265709) 1 NC_011205.1 hypothetical protein 2265709 439851002497 SeD_A2396 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216145.1 2264651 R 439851 CDS YP_002216146.1 198245153 complement(2265828..2266295) 1 NC_011205.1 identified by match to protein family HMM PF06445; DNA gyrase inhibitor 2266295 439851002498 SeD_A2397 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA gyrase inhibitor YP_002216146.1 2265828 R 439851 CDS YP_002216147.1 198246188 complement(2266446..2267618) 1 NC_011205.1 removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 2267618 dacD 439851002499 dacD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-alanyl-D-alanine carboxypeptidase YP_002216147.1 2266446 R 439851 CDS YP_002216148.1 198245635 complement(2267742..2268506) 1 NC_011205.1 identified by match to protein family HMM PF01292; thiosulfate reductase cytochrome B subunit 2268506 439851002500 SeD_A2399 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiosulfate reductase cytochrome B subunit YP_002216148.1 2267742 R 439851 CDS YP_002216149.1 198246136 complement(2268503..2269081) 1 NC_011205.1 identified by match to protein family HMM PF00037; (4Fe-4S)-binding protein 2269081 439851002501 SeD_A2400 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 (4Fe-4S)-binding protein YP_002216149.1 2268503 R 439851 CDS YP_002216150.1 198244407 complement(2269096..2271372) 1 NC_011205.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; thiosulfate reductase 2271372 phsA 439851002502 phsA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiosulfate reductase YP_002216150.1 2269096 R 439851 CDS YP_002216151.1 198245969 2271991..2274339 1 NC_011205.1 secreted effector protein 2274339 439851002503 SeD_A2402 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secreted effector protein YP_002216151.1 2271991 D 439851 CDS YP_002216152.1 198244245 complement(2274543..2274689) 1 NC_011205.1 identified by glimmer; hypothetical protein 2274689 439851002504 SeD_A2403 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216152.1 2274543 R 439851 CDS YP_002216153.1 198243454 2274706..2276136 1 NC_011205.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2276136 sbcB 439851002505 sbcB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 exonuclease I YP_002216153.1 2274706 D 439851 CDS YP_002216154.1 198243885 complement(2276272..2277630) 1 NC_011205.1 identified by match to protein family HMM PF00324; amino acid permease 2277630 yeeF 439851002506 yeeF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 amino acid permease YP_002216154.1 2276272 R 439851 CDS YP_002216155.1 198243395 complement(2277916..2278830) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 2278830 439851002507 SeD_A2406 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR substrate binding domain-containing protein YP_002216155.1 2277916 R 439851 CDS YP_002216156.1 198242607 complement(2278876..2279700) 1 NC_011205.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; hypothetical protein 2279700 439851002508 SeD_A2407 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216156.1 2278876 R 439851 CDS YP_002216157.1 198242125 2280059..2280958 1 NC_011205.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2280958 hisG 439851002509 hisG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP phosphoribosyltransferase YP_002216157.1 2280059 D 439851 CDS YP_002216158.1 198245865 2281061..2282365 1 NC_011205.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2282365 hisD 439851002510 hisD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 histidinol dehydrogenase YP_002216158.1 2281061 D 439851 CDS YP_002216159.1 198245389 2282362..2283441 1 NC_011205.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2283441 hisC 439851002511 hisC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 histidinol-phosphate aminotransferase YP_002216159.1 2282362 D 439851 CDS YP_002216160.1 198243607 2283438..2284505 1 NC_011205.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2284505 hisB 439851002512 hisB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_002216160.1 2283438 D 439851 CDS YP_002216161.1 198243392 2284505..2285095 1 NC_011205.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2285095 hisH 439851002513 hisH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 imidazole glycerol phosphate synthase subunit HisH YP_002216161.1 2284505 D 439851 CDS YP_002216162.1 198243070 2285095..2285832 1 NC_011205.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2285832 hisA 439851002514 hisA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_002216162.1 2285095 D 439851 CDS YP_002216163.1 198243359 2285814..2286590 1 NC_011205.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2286590 hisF 439851002515 hisF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 imidazole glycerol phosphate synthase subunit HisF YP_002216163.1 2285814 D 439851 CDS YP_002216164.1 198244796 2286584..2287195 1 NC_011205.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein 2287195 439851002516 SeD_A2416 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein YP_002216164.1 2286584 D 439851 CDS YP_002216165.1 198244259 complement(2287276..2288259) 1 NC_011205.1 identified by match to protein family HMM PF02706; chain length determinant protein 2288259 439851002517 SeD_A2417 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chain length determinant protein YP_002216165.1 2287276 R 439851 CDS YP_002216166.1 198245698 complement(2288402..2289568) 1 NC_011205.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; udp-glucose 6-dehydrogenase 2289568 439851002518 SeD_A2418 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 udp-glucose 6-dehydrogenase YP_002216166.1 2288402 R 439851 CDS YP_002216167.1 198245227 complement(2289630..2289818) 1 NC_011205.1 identified by glimmer; hypothetical protein 2289818 439851002519 SeD_A2419 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216167.1 2289630 R 439851 CDS YP_002216168.1 198242320 complement(2289806..2291212) 1 NC_011205.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 2291212 gnd 439851002520 gnd Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 6-phosphogluconate dehydrogenase YP_002216168.1 2289806 R 439851 CDS YP_002216169.1 198243914 complement(2291376..2292806) 1 NC_011205.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025; undecaprenyl-phosphate galactose phosphotransferase 2292806 439851002521 SeD_A2421 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 undecaprenyl-phosphate galactose phosphotransferase YP_002216169.1 2291376 R 439851 CDS YP_002216170.1 198243626 complement(2292877..2294310) 1 NC_011205.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase 2294310 439851002522 SeD_A2422 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphomannomutase YP_002216170.1 2292877 R 439851 CDS YP_002216171.1 198245656 complement(2294297..2295736) 1 NC_011205.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase 2295736 439851002523 SeD_A2423 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 mannose-1-phosphate guanylyltransferase YP_002216171.1 2294297 R 439851 CDS YP_002216172.1 198245791 complement(2295737..2296681) 1 NC_011205.1 identified by match to protein family HMM PF00535; O antigen biosynthesis rhamnosyltransferase 2296681 439851002524 SeD_A2424 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 O antigen biosynthesis rhamnosyltransferase YP_002216172.1 2295737 R 439851 CDS YP_002216173.1 198244018 complement(2296682..2297743) 1 NC_011205.1 identified by match to protein family HMM PF00534; hypothetical protein 2297743 439851002525 SeD_A2425 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216173.1 2296682 R 439851 CDS YP_002216174.1 198244838 complement(2298318..2299319) 1 NC_011205.1 identified by match to protein family HMM PF00535; O antigen biosynthesis abequosyltransferase RfbV 2299319 439851002526 SeD_A2426 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 O antigen biosynthesis abequosyltransferase RfbV YP_002216174.1 2298318 R 439851 CDS YP_002216175.1 198242941 complement(2299321..2300604) 1 NC_011205.1 O-antigen transporter 2300604 439851002527 SeD_A2427 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 O-antigen transporter YP_002216175.1 2299321 R 439851 CDS YP_002216176.1 198243307 complement(2300690..2301706) 1 NC_011205.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; CDP-paratose 2-epimerase 2301706 439851002528 SeD_A2428 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 CDP-paratose 2-epimerase YP_002216176.1 2300690 R 439851 CDS YP_002216177.1 198241942 complement(2301703..2302542) 1 NC_011205.1 identified by match to protein family HMM PF01370; paratose synthase 2302542 439851002529 SeD_A2429 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 paratose synthase YP_002216177.1 2301703 R 439851 CDS YP_002216178.1 198242191 complement(2302578..2303891) 1 NC_011205.1 identified by match to protein family HMM PF01041; lipopolysaccharide biosynthesis protein RfbH 2303891 439851002530 SeD_A2430 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipopolysaccharide biosynthesis protein RfbH YP_002216178.1 2302578 R 439851 CDS YP_002216179.1 198242841 complement(2303918..2304997) 1 NC_011205.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR02622; CDP-glucose 4,6-dehydratase 2304997 rfbG 439851002531 rfbG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 CDP-glucose 4,6-dehydratase YP_002216179.1 2303918 R 439851 CDS YP_002216180.1 198245169 complement(2305002..2305775) 1 NC_011205.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623; glucose-1-phosphate cytidylyltransferase 2305775 rfbF 439851002532 rfbF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucose-1-phosphate cytidylyltransferase YP_002216180.1 2305002 R 439851 CDS YP_002216181.1 198246059 complement(2306771..2307319) 1 NC_011205.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase 2307319 rfbC 439851002534 rfbC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dTDP-4-dehydrorhamnose 3,5-epimerase YP_002216181.1 2306771 R 439851 CDS YP_002216182.1 198245429 complement(2307323..2308207) 1 NC_011205.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase 2308207 rfbA 439851002535 rfbA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucose-1-phosphate thymidylyltransferase YP_002216182.1 2307323 R 439851 CDS YP_002216183.1 198242562 complement(2308249..2309148) 1 NC_011205.1 with dTDP-4-dehydrorhamnose 3,5-epimerase forms a complex known as dTDP-L-rhamnose synthetase; catalyzes the reduction of dTDP-4-dehydro-6-deoxy-L-mannose to dTDP-L-rhamnose; dTDP-4-dehydrorhamnose reductase 2309148 rfbD 439851002536 rfbD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dTDP-4-dehydrorhamnose reductase YP_002216183.1 2308249 R 439851 CDS YP_002216184.1 198241929 complement(2309148..2310233) 1 NC_011205.1 NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose 4,6 dehydratase 2310233 rfbB 439851002537 rfbB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dTDP-glucose 4,6 dehydratase YP_002216184.1 2309148 R 439851 CDS YP_002216185.1 198243556 complement(2310610..2311503) 1 NC_011205.1 together with GalU subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP-glucose-1-phosphate uridylyltransferase 2311503 galF 439851002538 galF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UTP-glucose-1-phosphate uridylyltransferase YP_002216185.1 2310610 R 439851 CDS YP_002216186.1 198242949 complement(2311681..2313078) 1 NC_011205.1 WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; colanic acid biosynthesis protein 2313078 wcaM 439851002539 wcaM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 colanic acid biosynthesis protein YP_002216186.1 2311681 R 439851 CDS YP_002216187.1 198243356 complement(2313095..2314315) 1 NC_011205.1 identified by match to protein family HMM PF00534; colanic acid biosynthesis glycosyltransferase WcaL 2314315 439851002540 SeD_A2440 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 colanic acid biosynthesis glycosyltransferase WcaL YP_002216187.1 2313095 R 439851 CDS YP_002216188.1 198244676 complement(2314312..2315592) 1 NC_011205.1 identified by match to protein family HMM PF04230; pyruvyl transferase 2315592 439851002541 SeD_A2441 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pyruvyl transferase YP_002216188.1 2314312 R 439851 CDS YP_002216189.1 198244397 complement(2315614..2317146) 1 NC_011205.1 identified by match to protein family HMM PF01943; colanic acid exporter 2317146 439851002542 SeD_A2442 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 colanic acid exporter YP_002216189.1 2315614 R 439851 CDS YP_002216190.1 198246236 complement(2317194..2318588) 1 NC_011205.1 WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid; UDP-glucose lipid carrier transferase 2318588 439851002543 SeD_A2443 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UDP-glucose lipid carrier transferase YP_002216190.1 2317194 R 439851 CDS YP_002216191.1 198242219 complement(2318642..2320012) 1 NC_011205.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase 2320012 cpsG 439851002544 cpsG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphomannomutase YP_002216191.1 2318642 R 439851 CDS YP_002216192.1 198242697 complement(2320123..2321559) 1 NC_011205.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase 2321559 cpsB 439851002545 cpsB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 mannose-1-phosphate guanylyltransferase YP_002216192.1 2320123 R 439851 CDS YP_002216193.1 198243282 complement(2321562..2322785) 1 NC_011205.1 identified by match to protein family HMM PF00534; glycosyl transferase 2322785 wcaI 439851002546 wcaI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycosyl transferase YP_002216193.1 2321562 R 439851 CDS YP_002216194.1 198243746 complement(2322782..2323255) 1 NC_011205.1 identified by match to protein family HMM PF00293; GDP-mannose mannosyl hydrolase 2323255 nudD 439851002547 nudD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GDP-mannose mannosyl hydrolase YP_002216194.1 2322782 R 439851 CDS YP_002216195.1 198244795 complement(2323258..2324223) 1 NC_011205.1 identified by match to protein family HMM PF01370; match to protein family HMM PF04321; GDP-L-fucose synthetase 2324223 fcl 439851002548 fcl Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GDP-L-fucose synthetase YP_002216195.1 2323258 R 439851 CDS YP_002216196.1 198245271 complement(2324226..2325347) 1 NC_011205.1 identified by match to protein family HMM PF01370; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase 2325347 gmd 439851002549 gmd Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GDP-mannose 4,6-dehydratase YP_002216196.1 2324226 R 439851 CDS YP_002216197.1 198243027 complement(2325371..2325925) 1 NC_011205.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); colanic acid biosynthesis acetyltransferase WcaF 2325925 439851002550 SeD_A2450 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 colanic acid biosynthesis acetyltransferase WcaF YP_002216197.1 2325371 R 439851 CDS YP_002216198.1 198242454 complement(2325941..2326687) 1 NC_011205.1 identified by match to protein family HMM PF00535; glycosyl transferase 2326687 439851002551 SeD_A2451 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycosyl transferase YP_002216198.1 2325941 R 439851 CDS YP_002216199.1 198244233 complement(2326700..2327914) 1 NC_011205.1 essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; colanic acid biosynthesis protein 2327914 wcaD 439851002552 wcaD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 colanic acid biosynthesis protein YP_002216199.1 2326700 R 439851 CDS YP_002216200.1 198243685 complement(2327889..2329106) 1 NC_011205.1 glycosyl transferase 2329106 439851002553 SeD_A2453 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycosyl transferase YP_002216200.1 2327889 R 439851 CDS YP_002216201.1 198245610 complement(2329103..2329591) 1 NC_011205.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium; colanic acid biosynthesis acetyltransferase WcaB 2329591 439851002554 SeD_A2454 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 colanic acid biosynthesis acetyltransferase WcaB YP_002216201.1 2329103 R 439851 CDS YP_002216202.1 198242361 complement(2329594..2330505) 1 NC_011205.1 identified by match to protein family HMM PF00535; glycosyl transferase 2330505 439851002555 SeD_A2455 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycosyl transferase YP_002216202.1 2329594 R 439851 CDS YP_002216203.1 198243583 complement(2330523..2332682) 1 NC_011205.1 Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); tyrosine kinase 2332682 439851002556 SeD_A2456 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tyrosine kinase YP_002216203.1 2330523 R 439851 CDS YP_002216204.1 198245032 complement(2332679..2333128) 1 NC_011205.1 Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis; tyrosine phosphatase 2333128 wzb 439851002557 wzb Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tyrosine phosphatase YP_002216204.1 2332679 R 439851 CDS YP_002216205.1 198242572 complement(2333134..2334273) 1 NC_011205.1 identified by match to protein family HMM PF02563; polysaccharide biosynthesis/export protein 2334273 439851002558 SeD_A2458 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 polysaccharide biosynthesis/export protein YP_002216205.1 2333134 R 439851 CDS YP_002216206.1 198241767 2334209..2334322 1 NC_011205.1 identified by glimmer; hypothetical protein 2334322 439851002559 SeD_A2459 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216206.1 2334209 D 439851 CDS YP_002216207.1 198245281 complement(2336614..2338470) 1 NC_011205.1 YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs; assembly protein 2338470 439851002561 SeD_A2461 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 assembly protein YP_002216207.1 2336614 R 439851 CDS YP_002216208.1 198245045 complement(2338509..2339090) 1 NC_011205.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 2339090 dcd 439851002562 dcd Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 deoxycytidine triphosphate deaminase YP_002216208.1 2338509 R 439851 CDS YP_002216209.1 198245180 complement(2339181..2339822) 1 NC_011205.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2339822 udk 439851002563 udk Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 uridine kinase YP_002216209.1 2339181 R 439851 CDS YP_002216210.1 198243790 complement(2339898..2340068) 1 NC_011205.1 hypothetical protein 2340068 439851002564 SeD_A2464 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216210.1 2339898 R 439851 CDS YP_002216211.1 198246247 complement(2343111..2343980) 1 NC_011205.1 inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine; 3-methyl-adenine DNA glycosylase 2343980 439851002567 SeD_A2467 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-methyl-adenine DNA glycosylase YP_002216211.1 2343111 R 439851 CDS YP_002216212.1 198243228 complement(2345703..2345819) 1 NC_011205.1 identified by glimmer; hypothetical protein 2345819 439851002571 SeD_A2471 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216212.1 2345703 R 439851 CDS YP_002216213.1 198243856 2345907..2347148 1 NC_011205.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtA 2347148 439851002572 SeD_A2472 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multidrug efflux system subunit MdtA YP_002216213.1 2345907 D 439851 CDS YP_002216214.1 198244828 2347148..2350270 1 NC_011205.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtB 2350270 mdtB 439851002573 mdtB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multidrug efflux system subunit MdtB YP_002216214.1 2347148 D 439851 CDS YP_002216215.1 198245494 2350271..2353351 1 NC_011205.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtC 2353351 mdtC 439851002574 mdtC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multidrug efflux system subunit MdtC YP_002216215.1 2350271 D 439851 CDS YP_002216216.1 198244992 2353348..2354760 1 NC_011205.1 identified by match to protein family HMM PF07690; multidrug efflux system protein MdtE 2354760 439851002575 SeD_A2475 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multidrug efflux system protein MdtE YP_002216216.1 2353348 D 439851 CDS YP_002216217.1 198244518 2354760..2356163 1 NC_011205.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; signal transduction histidine-protein kinase BaeS 2356163 439851002576 SeD_A2476 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 signal transduction histidine-protein kinase BaeS YP_002216217.1 2354760 D 439851 CDS YP_002216218.1 198242249 2356160..2356882 1 NC_011205.1 response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport; DNA-binding transcriptional regulator BaeR 2356882 439851002577 SeD_A2477 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator BaeR YP_002216218.1 2356160 D 439851 CDS YP_002216219.1 198242915 2357151..2358353 1 NC_011205.1 hypothetical protein 2358353 439851002578 SeD_A2478 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216219.1 2357151 D 439851 CDS YP_002216220.1 198242389 2358353..2359069 1 NC_011205.1 inner membrane protein 2359069 439851002579 SeD_A2479 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002216220.1 2358353 D 439851 CDS YP_002216221.1 198241934 2359080..2361191 1 NC_011205.1 hypothetical protein 2361191 439851002580 SeD_A2480 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216221.1 2359080 D 439851 CDS YP_002216222.1 198242901 2361307..2362668 1 NC_011205.1 identified by match to protein family HMM PF01136; peptidase, U32 family 2362668 439851002581 SeD_A2481 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidase, U32 family YP_002216222.1 2361307 D 439851 CDS YP_002216223.1 198244701 complement(2363308..2363577) 1 NC_011205.1 Tir chaperone 2363577 439851002583 SeD_A2483 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Tir chaperone YP_002216223.1 2363308 R 439851 CDS YP_002216224.1 198242006 2364743..2365642 1 NC_011205.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 2365642 439851002584 SeD_A2484 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipid kinase YP_002216224.1 2364743 D 439851 CDS YP_002216225.1 198244205 2367001..2368272 1 NC_011205.1 identified by match to protein family HMM PF03825; match to protein family HMM PF07690; match to protein family HMM TIGR00889; nucleoside transporter 2368272 yegT 439851002586 yegT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nucleoside transporter YP_002216225.1 2367001 D 439851 CDS YP_002216226.1 198245808 2368269..2369273 1 NC_011205.1 identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase family protein 2369273 439851002587 SeD_A2487 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ADP-ribosylglycohydrolase family protein YP_002216226.1 2368269 D 439851 CDS YP_002216227.1 198244551 2369270..2370235 1 NC_011205.1 identified by match to protein family HMM PF00294; PfkB family kinase 2370235 439851002588 SeD_A2488 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PfkB family kinase YP_002216227.1 2369270 D 439851 CDS YP_002216228.1 198244622 complement(2370209..2370955) 1 NC_011205.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 2370955 439851002589 SeD_A2489 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GntR family transcriptional regulator YP_002216228.1 2370209 R 439851 CDS YP_002216229.1 198243934 complement(2370991..2371791) 1 NC_011205.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 2371791 thiD 439851002590 thiD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphomethylpyrimidine kinase YP_002216229.1 2370991 R 439851 CDS YP_002216230.1 198243308 complement(2371778..2372575) 1 NC_011205.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 2372575 thiM 439851002591 thiM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydroxyethylthiazole kinase YP_002216230.1 2371778 R 439851 CDS YP_002216231.1 198243493 complement(2372674..2372859) 1 NC_011205.1 identified by glimmer; hypothetical protein 2372859 439851002592 SeD_A2493 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216231.1 2372674 R 439851 CDS YP_002216232.1 198243165 2372985..2373299 1 NC_011205.1 hypothetical protein 2373299 439851002593 SeD_A2494 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216232.1 2372985 D 439851 CDS YP_002216233.1 198244765 complement(2373343..2374365) 1 NC_011205.1 hypothetical protein 2374365 439851002594 SeD_A2495 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216233.1 2373343 R 439851 CDS YP_002216234.1 198243594 complement(2374381..2376867) 1 NC_011205.1 identified by match to protein family HMM PF00577; fimbrial usher protein 2376867 439851002595 SeD_A2496 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial usher protein YP_002216234.1 2374381 R 439851 CDS YP_002216235.1 198241837 complement(2376896..2377576) 1 NC_011205.1 identified by match to protein family HMM PF00345; gram-negative pilus assembly chaperone 2377576 439851002596 SeD_A2497 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gram-negative pilus assembly chaperone YP_002216235.1 2376896 R 439851 CDS YP_002216236.1 198242448 complement(2377638..2378171) 1 NC_011205.1 identified by match to protein family HMM PF00419; fimbrial subunit protein 2378171 439851002597 SeD_A2498 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial subunit protein YP_002216236.1 2377638 R 439851 CDS YP_002216237.1 198243158 complement(2378450..2378731) 1 NC_011205.1 hypothetical protein 2378731 439851002598 SeD_A2499 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216237.1 2378450 R 439851 CDS YP_002216238.1 198243601 complement(2379009..2380118) 1 NC_011205.1 ATPase 2380118 439851002599 SeD_A2500 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATPase YP_002216238.1 2379009 R 439851 CDS YP_002216239.1 198241850 2380283..2382316 1 NC_011205.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2382316 metG 439851002600 metG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methionyl-tRNA synthetase YP_002216239.1 2380283 D 439851 CDS YP_002216240.1 198242577 2382557..2383015 1 NC_011205.1 identified by match to protein family HMM PF06998; hypothetical protein 2383015 439851002601 SeD_A2502 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216240.1 2382557 D 439851 CDS YP_002216241.1 198245560 2383295..2383717 1 NC_011205.1 identified by match to protein family HMM PF06998; hypothetical protein 2383717 439851002602 SeD_A2503 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216241.1 2383295 D 439851 CDS YP_002216242.1 198245232 complement(2383774..2384241) 1 NC_011205.1 identified by match to protein family HMM PF07308; hypothetical protein 2384241 439851002603 SeD_A2504 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216242.1 2383774 R 439851 CDS YP_002216243.1 198244322 complement(2384288..2385007) 1 NC_011205.1 unknown function; when overproduced it confers drug-resistance; two-component response-regulatory protein YehT 2385007 439851002604 SeD_A2505 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 two-component response-regulatory protein YehT YP_002216243.1 2384288 R 439851 CDS YP_002216244.1 198243117 complement(2385004..2386689) 1 NC_011205.1 identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694; sensor histidine kinase 2386689 439851002605 SeD_A2506 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sensor histidine kinase YP_002216244.1 2385004 R 439851 CDS YP_002216245.1 198245516 2386912..2387643 1 NC_011205.1 identified by match to protein family HMM PF00376; MerR family transcriptional regulator 2387643 439851002606 SeD_A2507 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 MerR family transcriptional regulator YP_002216245.1 2386912 D 439851 CDS YP_002216246.1 198241930 complement(2387791..2388522) 1 NC_011205.1 identified by match to protein family HMM PF00528; ABC transporter permease 2388522 439851002607 SeD_A2508 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter permease YP_002216246.1 2387791 R 439851 CDS YP_002216247.1 198241863 complement(2388506..2389453) 1 NC_011205.1 identified by match to protein family HMM PF00005; glycine betaine/carnitine/choline transport ATP-binding protein opuCA 2389453 439851002608 SeD_A2509 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycine betaine/carnitine/choline transport ATP-binding protein opuCA YP_002216247.1 2388506 R 439851 CDS YP_002216248.1 198242348 complement(2389446..2390615) 1 NC_011205.1 identified by match to protein family HMM PF00528; ABC transporter permease 2390615 439851002609 SeD_A2510 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter permease YP_002216248.1 2389446 R 439851 CDS YP_002216249.1 198244896 complement(2390619..2391536) 1 NC_011205.1 identified by match to protein family HMM PF04069; amine ABC transporter periplasmic amine-binding protein 2391536 439851002610 SeD_A2511 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 amine ABC transporter periplasmic amine-binding protein YP_002216249.1 2390619 R 439851 CDS YP_002216250.1 198245676 complement(2391717..2393984) 1 NC_011205.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915; periplasmic beta-glucosidase 2393984 439851002611 SeD_A2512 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 periplasmic beta-glucosidase YP_002216250.1 2391717 R 439851 CDS YP_002216251.1 198243620 2394281..2396011 1 NC_011205.1 component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 2396011 439851002612 SeD_A2513 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-lactate dehydrogenase YP_002216251.1 2394281 D 439851 CDS YP_002216252.1 198244375 complement(2396070..2396978) 1 NC_011205.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 2396978 pbpG 439851002613 pbpG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-alanyl-D-alanine endopeptidase YP_002216252.1 2396070 R 439851 CDS YP_002216253.1 198242323 complement(2397183..2397770) 1 NC_011205.1 identified by match to protein family HMM PF06930; hypothetical protein 2397770 439851002614 SeD_A2515 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216253.1 2397183 R 439851 CDS YP_002216254.1 198245747 2397929..2398498 1 NC_011205.1 identified by match to protein family HMM PF09335; hypothetical protein 2398498 439851002615 SeD_A2516 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216254.1 2397929 D 439851 CDS YP_002216255.1 198244138 complement(2398547..2399329) 1 NC_011205.1 identified by match to protein family HMM PF00106; acetoin dehydrogenase 2399329 439851002616 SeD_A2517 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetoin dehydrogenase YP_002216255.1 2398547 R 439851 CDS YP_002216256.1 198244729 complement(2399374..2400810) 1 NC_011205.1 may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; multidrug resistance outer membrane protein MdtQ 2400810 439851002617 SeD_A2518 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multidrug resistance outer membrane protein MdtQ YP_002216256.1 2399374 R 439851 CDS YP_002216257.1 198243068 complement(2400861..2400998) 1 NC_011205.1 hypothetical protein 2400998 439851002618 SeD_A2519 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216257.1 2400861 R 439851 CDS YP_002216258.1 198243841 2401001..2401198 1 NC_011205.1 hypothetical protein 2401198 439851002619 SeD_A2520 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216258.1 2401001 D 439851 CDS YP_002216259.1 198242215 complement(2401269..2402207) 1 NC_011205.1 identified by match to protein family HMM PF01207; tRNA-dihydrouridine synthase C 2402207 439851002620 SeD_A2521 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA-dihydrouridine synthase C YP_002216259.1 2401269 R 439851 CDS YP_002216260.1 198242749 complement(2402316..2403509) 1 NC_011205.1 catalyzes the formation of catechol from salicylate; salicylate hydroxylase 2403509 439851002621 SeD_A2522 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 salicylate hydroxylase YP_002216260.1 2402316 R 439851 CDS YP_002216261.1 198243352 complement(2403524..2404168) 1 NC_011205.1 identified by match to protein family HMM PF02798; match to protein family HMM TIGR01262; maleylacetoacetate isomerase 2404168 maiA 439851002622 maiA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 maleylacetoacetate isomerase YP_002216261.1 2403524 R 439851 CDS YP_002216262.1 198243751 complement(2404177..2404878) 1 NC_011205.1 identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase family protein 2404878 439851002623 SeD_A2524 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fumarylacetoacetate hydrolase family protein YP_002216262.1 2404177 R 439851 CDS YP_002216263.1 198243492 complement(2404894..2405931) 1 NC_011205.1 identified by match to protein family HMM PF07883; match to protein family HMM TIGR02272; gentisate 1,2-dioxygenase 2405931 gtdA 439851002624 gtdA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gentisate 1,2-dioxygenase YP_002216263.1 2404894 R 439851 CDS YP_002216264.1 198245347 complement(2405943..2407301) 1 NC_011205.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; 4-hydroxybenzoate transporter 2407301 439851002625 SeD_A2526 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-hydroxybenzoate transporter YP_002216264.1 2405943 R 439851 CDS YP_002216265.1 198243846 2408467..2408865 1 NC_011205.1 identified by match to protein family HMM PF03788; hypothetical protein 2408865 439851002627 SeD_A2528 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216265.1 2408467 D 439851 CDS YP_002216266.1 198246098 2408862..2409557 1 NC_011205.1 identified by match to protein family HMM PF04172; match to protein family HMM TIGR00659; hypothetical protein 2409557 439851002628 SeD_A2529 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216266.1 2408862 D 439851 CDS YP_002216267.1 198242046 2409711..2410595 1 NC_011205.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2410595 cdd 439851002629 cdd Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytidine deaminase YP_002216267.1 2409711 D 439851 CDS YP_002216268.1 198245373 2410772..2411491 1 NC_011205.1 identified by match to protein family HMM PF02698; hypothetical protein 2411491 439851002630 SeD_A2531 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216268.1 2410772 D 439851 CDS YP_002216269.1 198245836 2411494..2411733 1 NC_011205.1 inner membrane protein 2411733 439851002631 SeD_A2532 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002216269.1 2411494 D 439851 CDS YP_002216270.1 198242469 2411938..2413179 1 NC_011205.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 2413179 439851002632 SeD_A2533 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxidoreductase YP_002216270.1 2411938 D 439851 CDS YP_002216271.1 198241985 2413173..2414408 1 NC_011205.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 2414408 439851002633 SeD_A2534 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dihydropyrimidine dehydrogenase YP_002216271.1 2413173 D 439851 CDS YP_002216272.1 198242043 complement(2414483..2415493) 1 NC_011205.1 ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane component 2415493 mglC 439851002634 mglC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 beta-methylgalactoside transporter inner membrane component YP_002216272.1 2414483 R 439851 CDS YP_002216273.1 198244274 complement(2418638..2419660) 1 NC_011205.1 negative regulator of the mglBAC operon for galactose utilization; DNA-binding transcriptional regulator GalS 2419660 galS 439851002637 galS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator GalS YP_002216273.1 2418638 R 439851 CDS YP_002216274.1 198245878 complement(2419810..2420952) 1 NC_011205.1 identified by match to protein family HMM PF04171; match to protein family HMM PF04235; hypothetical protein 2420952 439851002638 SeD_A2541 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216274.1 2419810 R 439851 CDS YP_002216275.1 198245121 complement(2420967..2421635) 1 NC_011205.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2421635 folE 439851002639 folE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GTP cyclohydrolase I YP_002216275.1 2420967 R 439851 CDS YP_002216276.1 198242290 2421965..2422822 1 NC_011205.1 identified by match to protein family HMM PF00756; match to protein family HMM TIGR02821; S-formylglutathione hydrolase 2422822 fghA 439851002640 fghA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 S-formylglutathione hydrolase YP_002216276.1 2421965 D 439851 CDS YP_002216277.1 198245143 complement(2422811..2423245) 1 NC_011205.1 identified by match to protein family HMM PF01381; transcriptional regulator 2423245 439851002641 SeD_A2544 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002216277.1 2422811 R 439851 CDS YP_002216278.1 198243931 complement(2423205..2424638) 1 NC_011205.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00720; L-serine ammonia-lyase 2424638 439851002642 SeD_A2545 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-serine ammonia-lyase YP_002216278.1 2423205 R 439851 CDS YP_002216279.1 198244587 2424789..2425676 1 NC_011205.1 identified by match to protein family HMM PF00702; match to protein family HMM PF06888; match to protein family HMM PF08282; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase SerB 2425676 serB 439851002643 serB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoserine phosphatase SerB YP_002216279.1 2424789 D 439851 CDS YP_002216280.1 198245195 2425709..2427031 1 NC_011205.1 identified by match to protein family HMM PF07690; regulatory protein UhpC 2427031 439851002644 SeD_A2547 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 regulatory protein UhpC YP_002216280.1 2425709 D 439851 CDS YP_002216281.1 198245301 complement(2427075..2429027) 1 NC_011205.1 Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein; colicin I receptor 2429027 439851002645 SeD_A2548 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 colicin I receptor YP_002216281.1 2427075 R 439851 CDS YP_002216282.1 198245922 complement(2429414..2430883) 1 NC_011205.1 identified by match to protein family HMM PF00324; lysine transporter 2430883 439851002646 SeD_A2549 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lysine transporter YP_002216282.1 2429414 R 439851 CDS YP_002216283.1 198246110 complement(2431073..2431936) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 2431936 439851002647 SeD_A2550 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator YP_002216283.1 2431073 R 439851 CDS YP_002216284.1 198242212 complement(2431964..2432083) 1 NC_011205.1 hypothetical protein 2432083 439851002648 SeD_A2552 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216284.1 2431964 R 439851 CDS YP_002216285.1 198243357 2432057..2433106 1 NC_011205.1 identified by match to protein family HMM PF03601; match to protein family HMM TIGR00698; hypothetical protein 2433106 439851002649 SeD_A2551 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216285.1 2432057 D 439851 CDS YP_002216286.1 198244000 2433185..2434042 1 NC_011205.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2434042 439851002650 SeD_A2553 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 endonuclease IV YP_002216286.1 2433185 D 439851 CDS YP_002216287.1 198244051 complement(2434107..2435795) 1 NC_011205.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system fructose-specific transporter subunits IIBC 2435795 439851002651 SeD_A2554 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system fructose-specific transporter subunits IIBC YP_002216287.1 2434107 R 439851 CDS YP_002216288.1 198244662 complement(2435812..2436750) 1 NC_011205.1 converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; 1-phosphofructokinase 2436750 fruK 439851002652 fruK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 1-phosphofructokinase YP_002216288.1 2435812 R 439851 CDS YP_002216289.1 198244585 complement(2436750..2437880) 1 NC_011205.1 phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein 2437880 fruB 439851002653 fruB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein YP_002216289.1 2436750 R 439851 CDS YP_002216290.1 198244435 2437901..2438032 1 NC_011205.1 identified by glimmer; hypothetical protein 2438032 439851002654 SeD_A2557 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216290.1 2437901 D 439851 CDS YP_002216291.1 198243548 2438117..2438239 1 NC_011205.1 identified by glimmer; hypothetical protein 2438239 439851002655 SeD_A2558 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216291.1 2438117 D 439851 CDS YP_002216292.1 198242958 2438249..2439430 1 NC_011205.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00899; sugar efflux transporter B 2439430 439851002656 SeD_A2559 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sugar efflux transporter B YP_002216292.1 2438249 D 439851 CDS YP_002216293.1 198242023 complement(2439494..2440159) 1 NC_011205.1 inner membrane protein 2440159 439851002657 SeD_A2560 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002216293.1 2439494 R 439851 CDS YP_002216294.1 198241962 complement(2440161..2440283) 1 NC_011205.1 hypothetical protein 2440283 439851002658 SeD_A2561 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216294.1 2440161 R 439851 CDS YP_002216295.1 198245562 2441250..2441822 1 NC_011205.1 Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P 2441822 439851002659 SeD_A2562 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 elongation factor P YP_002216295.1 2441250 D 439851 CDS YP_002216296.1 198242709 2442035..2443021 1 NC_011205.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683; cobalamin synthesis protein, P47K 2443021 439851002660 SeD_A2563 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cobalamin synthesis protein, P47K YP_002216296.1 2442035 D 439851 CDS YP_002216297.1 198244049 2443024..2443770 1 NC_011205.1 identified by match to protein family HMM PF01569; hypothetical protein 2443770 439851002661 SeD_A2564 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216297.1 2443024 D 439851 CDS YP_002216298.1 198245806 2444184..2444756 1 NC_011205.1 by similarity, Spr seems to have peptidase activity; involved in thermoresistance; outer membrane lipoprotein 2444756 spr 439851002662 spr Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane lipoprotein YP_002216298.1 2444184 D 439851 CDS YP_002216299.1 198246093 2445130..2446686 1 NC_011205.1 identified by match to protein family HMM PF00563; hypothetical protein 2446686 439851002663 SeD_A2566 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216299.1 2445130 D 439851 CDS YP_002216300.1 198244480 2446793..2448598 1 NC_011205.1 identified by match to protein family HMM PF00496; extracellular solute-binding protein 2448598 439851002664 SeD_A2567 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 extracellular solute-binding protein YP_002216300.1 2446793 D 439851 CDS YP_002216301.1 198245447 2448608..2449702 1 NC_011205.1 identified by match to protein family HMM PF00528; ABC transporter permease 2449702 439851002665 SeD_A2568 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter permease YP_002216301.1 2448608 D 439851 CDS YP_002216302.1 198246099 2449702..2450727 1 NC_011205.1 identified by match to protein family HMM PF00528; ABC transporter permease 2450727 439851002666 SeD_A2569 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter permease YP_002216302.1 2449702 D 439851 CDS YP_002216303.1 198243851 2450729..2452318 1 NC_011205.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; glutathione import ATP-binding protein GsiA 2452318 439851002667 SeD_A2570 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione import ATP-binding protein GsiA YP_002216303.1 2450729 D 439851 CDS YP_002216304.1 198243202 complement(2452322..2452666) 1 NC_011205.1 hypothetical protein 2452666 439851002668 SeD_A2571 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216304.1 2452322 R 439851 CDS YP_002216305.1 198243528 complement(2453057..2454247) 1 NC_011205.1 Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system 2454247 bcr 439851002669 bcr Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bicyclomycin/multidrug efflux system YP_002216305.1 2453057 R 439851 CDS YP_002216306.1 198241888 complement(2454275..2454970) 1 NC_011205.1 catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; 16S rRNA pseudouridylate synthase A 2454970 rsuA 439851002670 rsuA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 16S rRNA pseudouridylate synthase A YP_002216306.1 2454275 R 439851 CDS YP_002216307.1 198244449 2455122..2456882 1 NC_011205.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; helicase 2456882 439851002671 SeD_A2574 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 helicase YP_002216307.1 2455122 D 439851 CDS YP_002216308.1 198245069 2457007..2457291 1 NC_011205.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2457291 439851002672 SeD_A2575 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L25 YP_002216308.1 2457007 D 439851 CDS YP_002216309.1 198244054 complement(2457400..2458020) 1 NC_011205.1 inner membrane protein 2458020 439851002673 SeD_A2576 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002216309.1 2457400 R 439851 CDS YP_002216310.1 198244667 complement(2458048..2459055) 1 NC_011205.1 identified by match to protein family HMM PF04245; nucleoid-associated protein NdpA 2459055 ndpA 439851002674 ndpA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nucleoid-associated protein NdpA YP_002216310.1 2458048 R 439851 CDS YP_002216311.1 198245466 2459235..2459462 1 NC_011205.1 identified by match to protein family HMM PF07208; hypothetical protein 2459462 439851002675 SeD_A2578 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216311.1 2459235 D 439851 CDS YP_002216312.1 198246108 2459494..2461254 1 NC_011205.1 identified by match to protein family HMM PF00884; hypothetical protein 2461254 439851002676 SeD_A2579 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216312.1 2459494 D 439851 CDS YP_002216313.1 198245144 complement(2462025..2464391) 1 NC_011205.1 hypothetical protein 2464391 439851002679 SeD_A2582 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216313.1 2462025 R 439851 CDS YP_002216314.1 198243191 2465981..2466358 1 NC_011205.1 virulence protein MsgA 2466358 439851002683 SeD_A2586 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 virulence protein MsgA YP_002216314.1 2465981 D 439851 CDS YP_002216315.1 198245643 complement(2466550..2467107) 1 NC_011205.1 outer membrane protein 2467107 439851002684 SeD_A2587 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein YP_002216315.1 2466550 R 439851 CDS YP_002216316.1 198246133 2467303..2467449 1 NC_011205.1 identified by glimmer; hypothetical protein 2467449 439851002685 SeD_A2588 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216316.1 2467303 D 439851 CDS YP_002216317.1 198244741 2467843..2468490 1 NC_011205.1 nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; transcriptional regulator NarP 2468490 439851002686 SeD_A2589 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator NarP YP_002216317.1 2467843 D 439851 CDS YP_002216318.1 198244333 complement(2468534..2469577) 1 NC_011205.1 identified by match to protein family HMM PF03918; cytochrome c-type biogenesis protein H2 2469577 439851002687 SeD_A2590 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome c-type biogenesis protein H2 YP_002216318.1 2468534 R 439851 CDS YP_002216319.1 198243828 complement(2469574..2470131) 1 NC_011205.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR00385; thiol:disulfide interChange protein DsbE 2470131 439851002688 SeD_A2591 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiol:disulfide interChange protein DsbE YP_002216319.1 2469574 R 439851 CDS YP_002216320.1 198243325 complement(2470128..2472059) 1 NC_011205.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR00353; cytochrome c-type biogenesis protein CcmF 2472059 ccmF 439851002689 ccmF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome c-type biogenesis protein CcmF YP_002216320.1 2470128 R 439851 CDS YP_002216321.1 198242794 complement(2472056..2472556) 1 NC_011205.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 2472556 439851002690 SeD_A2593 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome c-type biogenesis protein CcmE YP_002216321.1 2472056 R 439851 CDS YP_002216322.1 198242268 complement(2472553..2472726) 1 NC_011205.1 identified by match to protein family HMM PF04995; match to protein family HMM TIGR03141; heme exporter protein CcmD 2472726 ccmD 439851002691 ccmD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 heme exporter protein CcmD YP_002216322.1 2472553 R 439851 CDS YP_002216323.1 198245179 complement(2472762..2473508) 1 NC_011205.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191; ABC family protein 2473508 439851002692 SeD_A2595 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC family protein YP_002216323.1 2472762 R 439851 CDS YP_002216324.1 198242457 complement(2473551..2474210) 1 NC_011205.1 identified by match to protein family HMM PF03379; match to protein family HMM TIGR01190; heme exporter protein CcmB 2474210 ccmB 439851002693 ccmB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 heme exporter protein CcmB YP_002216324.1 2473551 R 439851 CDS YP_002216325.1 198242360 complement(2474207..2474830) 1 NC_011205.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 2474830 ccmA 439851002694 ccmA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome c biogenesis protein CcmA YP_002216325.1 2474207 R 439851 CDS YP_002216326.1 198241879 complement(2474845..2475447) 1 NC_011205.1 with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; cytochrome c-type protein NapC 2475447 napC 439851002695 napC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome c-type protein NapC YP_002216326.1 2474845 R 439851 CDS YP_002216327.1 198246237 complement(2475457..2475906) 1 NC_011205.1 small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; citrate reductase cytochrome c-type subunit 2475906 napB 439851002696 napB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 citrate reductase cytochrome c-type subunit YP_002216327.1 2475457 R 439851 CDS YP_002216328.1 198242343 complement(2476022..2476891) 1 NC_011205.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 2476891 napH 439851002697 napH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 quinol dehydrogenase membrane component YP_002216328.1 2476022 R 439851 CDS YP_002216329.1 198244951 complement(2476878..2477573) 1 NC_011205.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 2477573 napG 439851002698 napG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 quinol dehydrogenase periplasmic component YP_002216329.1 2476878 R 439851 CDS YP_002216330.1 198244404 complement(2477580..2480066) 1 NC_011205.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 2480066 napA 439851002699 napA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitrate reductase catalytic subunit YP_002216330.1 2477580 R 439851 CDS YP_002216331.1 198244252 complement(2480316..2480807) 1 NC_011205.1 Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA.; ferredoxin-type protein 2480807 napF 439851002701 napF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ferredoxin-type protein YP_002216331.1 2480316 R 439851 CDS YP_002216332.1 198242801 2481209..2481715 1 NC_011205.1 serine protease inhibitor, inhibits trypsin and other proteases; ecotin 2481715 439851002702 SeD_A2605 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ecotin YP_002216332.1 2481209 D 439851 CDS YP_002216333.1 198243297 complement(2481915..2483558) 1 NC_011205.1 efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane component/ATP-binding component 2483558 439851002703 SeD_A2606 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multidrug transporter membrane component/ATP-binding component YP_002216333.1 2481915 R 439851 CDS YP_002216334.1 198242580 complement(2483634..2484284) 1 NC_011205.1 identified by match to protein family HMM PF03171; alpha-ketoglutarate-dependent dioxygenase AlkB 2484284 439851002704 SeD_A2607 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 alpha-ketoglutarate-dependent dioxygenase AlkB YP_002216334.1 2483634 R 439851 CDS YP_002216335.1 198243812 complement(2484287..2485345) 1 NC_011205.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM PF02870; match to protein family HMM TIGR00589; regulatory protein ada 2485345 439851002705 SeD_A2608 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 regulatory protein ada YP_002216335.1 2484287 R 439851 CDS YP_002216336.1 198242105 complement(2485429..2486481) 1 NC_011205.1 catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; thiamine biosynthesis lipoprotein ApbE 2486481 439851002706 SeD_A2609 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiamine biosynthesis lipoprotein ApbE YP_002216336.1 2485429 R 439851 CDS YP_002216337.1 198242855 complement(2486596..2487732) 1 NC_011205.1 allows for ions and hydrophilic solutes to cross the outer membrane; outer membrane porin protein C 2487732 439851002707 SeD_A2610 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane porin protein C YP_002216337.1 2486596 R 439851 CDS YP_002216338.1 198245758 2488461..2491130 1 NC_011205.1 identified by match to protein family HMM PF01627; match to protein family HMM PF02518; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 2491130 439851002709 SeD_A2613 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphotransfer intermediate protein in two-component regulatory system with RcsBC YP_002216338.1 2488461 D 439851 CDS YP_002216339.1 198244297 2491147..2491797 1 NC_011205.1 two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB 2491797 rcsB 439851002710 rcsB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator RcsB YP_002216339.1 2491147 D 439851 CDS YP_002216340.1 198244777 complement(2491899..2494646) 1 NC_011205.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; hybrid sensory kinase in two-component regulatory system with RcsB and YojN 2494646 439851002711 SeD_A2615 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hybrid sensory kinase in two-component regulatory system with RcsB and YojN YP_002216340.1 2491899 R 439851 CDS YP_002216341.1 198243898 complement(2494863..2497499) 1 NC_011205.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 2497499 gyrA 439851002712 gyrA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA gyrase subunit A YP_002216341.1 2494863 R 439851 CDS YP_002216342.1 198244379 complement(2497909..2499111) 1 NC_011205.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase 2499111 439851002713 SeD_A2617 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 mandelate racemase YP_002216342.1 2497909 R 439851 CDS YP_002216343.1 198244581 complement(2499126..2500451) 1 NC_011205.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; permease 2500451 439851002714 SeD_A2618 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 permease YP_002216343.1 2499126 R 439851 CDS YP_002216344.1 198244118 2500501..2501385 1 NC_011205.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family regulatory protein 2501385 439851002715 SeD_A2619 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GntR family regulatory protein YP_002216344.1 2500501 D 439851 CDS YP_002216345.1 198243305 2501468..2502196 1 NC_011205.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2502196 ubiG 439851002716 ubiG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-demethylubiquinone-9 3-methyltransferase YP_002216345.1 2501468 D 439851 CDS YP_002216346.1 198243793 2502495..2504837 1 NC_011205.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2504837 nrdA 439851002717 nrdA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonucleotide-diphosphate reductase subunit alpha YP_002216346.1 2502495 D 439851 CDS YP_002216347.1 198242288 2504950..2506080 1 NC_011205.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2506080 nrdB 439851002718 nrdB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonucleotide-diphosphate reductase subunit beta YP_002216347.1 2504950 D 439851 CDS YP_002216348.1 198242774 2506080..2506334 1 NC_011205.1 plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases; 2Fe-2S ferredoxin 2506334 439851002719 SeD_A2623 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2Fe-2S ferredoxin YP_002216348.1 2506080 D 439851 CDS YP_002216349.1 198245203 complement(2506336..2507553) 1 NC_011205.1 identified by match to protein family HMM PF07690; quinolone resistence NorA protein 2507553 439851002720 SeD_A2624 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 quinolone resistence NorA protein YP_002216349.1 2506336 R 439851 CDS YP_002216350.1 198245748 2507688..2508566 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 2508566 439851002721 SeD_A2625 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002216350.1 2507688 D 439851 CDS YP_002216351.1 198244235 complement(2508682..2509752) 1 NC_011205.1 hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase 2509752 glpQ 439851002722 glpQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycerophosphodiester phosphodiesterase YP_002216351.1 2508682 R 439851 CDS YP_002216352.1 198244785 complement(2509757..2511115) 1 NC_011205.1 catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter 2511115 glpT 439851002723 glpT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sn-glycerol-3-phosphate transporter YP_002216352.1 2509757 R 439851 CDS YP_002216353.1 198243563 2511388..2513016 1 NC_011205.1 anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase subunit A 2513016 glpA 439851002724 glpA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sn-glycerol-3-phosphate dehydrogenase subunit A YP_002216353.1 2511388 D 439851 CDS YP_002216354.1 198241772 2513006..2514265 1 NC_011205.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 2514265 439851002725 SeD_A2629 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anaerobic glycerol-3-phosphate dehydrogenase subunit B YP_002216354.1 2513006 D 439851 CDS YP_002216355.1 198243688 2514262..2515452 1 NC_011205.1 anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 2515452 glpC 439851002726 glpC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sn-glycerol-3-phosphate dehydrogenase subunit C YP_002216355.1 2514262 D 439851 CDS YP_002216356.1 198245507 complement(2517010..2517186) 1 NC_011205.1 competence damage-inducible protein A 2517186 439851002728 SeD_A2632 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 competence damage-inducible protein A YP_002216356.1 2517010 R 439851 CDS YP_002216357.1 198245979 complement(2517192..2517995) 1 NC_011205.1 identified by match to protein family HMM PF03328; aldolase 2517995 439851002729 SeD_A2633 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aldolase YP_002216357.1 2517192 R 439851 CDS YP_002216358.1 198244521 complement(2518021..2519310) 1 NC_011205.1 identified by match to protein family HMM PF07690; major facilitator family transporter 2519310 439851002730 SeD_A2634 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 major facilitator family transporter YP_002216358.1 2518021 R 439851 CDS YP_002216359.1 198245002 complement(2519366..2520571) 1 NC_011205.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing enzyme family protein 2520571 439851002731 SeD_A2635 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 mandelate racemase/muconate lactonizing enzyme family protein YP_002216359.1 2519366 R 439851 CDS YP_002216360.1 198242980 complement(2520585..2521367) 1 NC_011205.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339; transcriptional regulator 2521367 439851002732 SeD_A2636 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002216360.1 2520585 R 439851 CDS YP_002216361.1 198243500 complement(2521617..2522813) 1 NC_011205.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR00200; competence damage-inducible protein A 2522813 439851002733 SeD_A2637 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 competence damage-inducible protein A YP_002216361.1 2521617 R 439851 CDS YP_002216362.1 198245626 complement(2522928..2523602) 1 NC_011205.1 identified by match to protein family HMM PF07437; inner membrane protein 2523602 439851002734 SeD_A2638 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002216362.1 2522928 R 439851 CDS YP_002216363.1 198244220 2523749..2524174 1 NC_011205.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 2524174 439851002735 SeD_A2639 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NUDIX family hydrolase YP_002216363.1 2523749 D 439851 CDS YP_002216364.1 198242093 complement(2524219..2524824) 1 NC_011205.1 identified by match to protein family HMM PF00300; aluminum-inducible protein 2524824 439851002736 SeD_A2640 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aluminum-inducible protein YP_002216364.1 2524219 R 439851 CDS YP_002216365.1 198242590 2525105..2526262 1 NC_011205.1 catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 2526262 439851002737 SeD_A2641 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase YP_002216365.1 2525105 D 439851 CDS YP_002216366.1 198243397 2526265..2527248 1 NC_011205.1 catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 2527248 439851002738 SeD_A2642 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase YP_002216366.1 2526265 D 439851 CDS YP_002216367.1 198243911 2527245..2529227 1 NC_011205.1 Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 2529227 439851002739 SeD_A2643 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase YP_002216367.1 2527245 D 439851 CDS YP_002216368.1 198242935 2529224..2530123 1 NC_011205.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 2530123 439851002740 SeD_A2644 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 polysaccharide deacetylase YP_002216368.1 2529224 D 439851 CDS YP_002216369.1 198243623 2530120..2531766 1 NC_011205.1 catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase 2531766 arnT 439851002741 arnT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-amino-4-deoxy-L-arabinose transferase YP_002216369.1 2530120 D 439851 CDS YP_002216370.1 198244391 2531763..2532098 1 NC_011205.1 identified by match to protein family HMM PF00893; hypothetical protein 2532098 439851002742 SeD_A2646 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216370.1 2531763 D 439851 CDS YP_002216371.1 198243656 2532098..2532475 1 NC_011205.1 hypothetical protein 2532475 439851002743 SeD_A2647 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216371.1 2532098 D 439851 CDS YP_002216372.1 198244902 complement(2532470..2532727) 1 NC_011205.1 signal transduction protein PmrD 2532727 439851002744 SeD_A2648 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 signal transduction protein PmrD YP_002216372.1 2532470 R 439851 CDS YP_002216373.1 198244798 complement(2532825..2534192) 1 NC_011205.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR01923; O-succinylbenzoic acid--CoA ligase 2534192 menE 439851002745 menE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 O-succinylbenzoic acid--CoA ligase YP_002216373.1 2532825 R 439851 CDS YP_002216374.1 198244178 complement(2534189..2535151) 1 NC_011205.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 2535151 menC 439851002746 menC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 O-succinylbenzoate synthase YP_002216374.1 2534189 R 439851 CDS YP_002216375.1 198243876 complement(2535151..2536008) 1 NC_011205.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 2536008 menB 439851002747 menB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 naphthoate synthase YP_002216375.1 2535151 R 439851 CDS YP_002216376.1 198243209 complement(2536023..2536781) 1 NC_011205.1 catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase 2536781 439851002748 SeD_A2652 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acyl-CoA thioester hydrolase YP_002216376.1 2536023 R 439851 CDS YP_002216377.1 198242867 complement(2536778..2538448) 1 NC_011205.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 2538448 menD 439851002749 menD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_002216377.1 2536778 R 439851 CDS YP_002216378.1 198242217 complement(2538534..2539829) 1 NC_011205.1 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; menaquinone-specific isochorismate synthase 2539829 439851002750 SeD_A2654 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 menaquinone-specific isochorismate synthase YP_002216378.1 2538534 R 439851 CDS YP_002216379.1 198245297 complement(2539930..2540235) 1 NC_011205.1 identified by match to protein family HMM PF05957; hypothetical protein 2540235 439851002751 SeD_A2655 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216379.1 2539930 R 439851 CDS YP_002216380.1 198242403 complement(2540290..2540751) 1 NC_011205.1 identified by match to protein family HMM PF00583; hypothetical protein 2540751 439851002752 SeD_A2656 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216380.1 2540290 R 439851 CDS YP_002216381.1 198244294 2540812..2541729 1 NC_011205.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 2541729 rnz 439851002753 rnz Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonuclease Z YP_002216381.1 2540812 D 439851 CDS YP_002216382.1 198242026 2541795..2542796 1 NC_011205.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheW 2542796 439851002754 SeD_A2658 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chemotaxis protein CheW YP_002216382.1 2541795 D 439851 CDS YP_002216383.1 198245970 complement(2542837..2544618) 1 NC_011205.1 identified by match to protein family HMM PF00092; von Willebrand factor A 2544618 439851002755 SeD_A2659 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 von Willebrand factor A YP_002216383.1 2542837 R 439851 CDS YP_002216384.1 198244759 complement(2544729..2544848) 1 NC_011205.1 identified by glimmer; hypothetical protein 2544848 439851002756 SeD_A2660 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216384.1 2544729 R 439851 CDS YP_002216385.1 198244142 2544889..2545014 1 NC_011205.1 identified by glimmer; hypothetical protein 2545014 439851002757 SeD_A2661 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216385.1 2544889 D 439851 CDS YP_002216386.1 198243517 complement(2545507..2546964) 1 NC_011205.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 2546964 nuoN 439851002758 nuoN Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NADH dehydrogenase subunit N YP_002216386.1 2545507 R 439851 CDS YP_002216387.1 198245514 complement(2546971..2548500) 1 NC_011205.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 2548500 nuoM 439851002759 nuoM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NADH dehydrogenase subunit M YP_002216387.1 2546971 R 439851 CDS YP_002216388.1 198246182 complement(2548814..2550655) 1 NC_011205.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 2550655 nuoL 439851002760 nuoL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NADH dehydrogenase subunit L YP_002216388.1 2548814 R 439851 CDS YP_002216389.1 198244507 complement(2550652..2550954) 1 NC_011205.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 2550954 nuoK 439851002761 nuoK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NADH dehydrogenase subunit K YP_002216389.1 2550652 R 439851 CDS YP_002216390.1 198244071 complement(2550951..2551505) 1 NC_011205.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 2551505 nuoJ 439851002762 nuoJ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NADH dehydrogenase subunit J YP_002216390.1 2550951 R 439851 CDS YP_002216391.1 198242928 complement(2551516..2552058) 1 NC_011205.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 2552058 nuoI 439851002763 nuoI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NADH dehydrogenase subunit I YP_002216391.1 2551516 R 439851 CDS YP_002216392.1 198241905 complement(2552073..2553050) 1 NC_011205.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 2553050 nuoH 439851002764 nuoH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NADH dehydrogenase subunit H YP_002216392.1 2552073 R 439851 CDS YP_002216393.1 198242141 complement(2553047..2555773) 1 NC_011205.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 2555773 nuoG 439851002765 nuoG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NADH dehydrogenase subunit G YP_002216393.1 2553047 R 439851 CDS YP_002216394.1 198242534 complement(2555804..2557141) 1 NC_011205.1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 2557141 nuoF 439851002766 nuoF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NADH dehydrogenase I subunit F YP_002216394.1 2555804 R 439851 CDS YP_002216395.1 198246025 complement(2557138..2557638) 1 NC_011205.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 2557638 nuoE 439851002767 nuoE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NADH dehydrogenase subunit E YP_002216395.1 2557138 R 439851 CDS YP_002216396.1 198244423 complement(2557641..2559443) 1 NC_011205.1 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 2559443 nuoC 439851002768 nuoC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional NADH:ubiquinone oxidoreductase subunit C/D YP_002216396.1 2557641 R 439851 CDS YP_002216397.1 198241862 complement(2559530..2560192) 1 NC_011205.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 2560192 439851002769 SeD_A2673 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NADH dehydrogenase subunit B YP_002216397.1 2559530 R 439851 CDS YP_002216398.1 198243632 complement(2560208..2560651) 1 NC_011205.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 2560651 nuoA 439851002770 nuoA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NADH dehydrogenase subunit A YP_002216398.1 2560208 R 439851 CDS YP_002216399.1 198245980 complement(2561046..2561198) 1 NC_011205.1 hypothetical protein 2561198 439851002771 SeD_A2675 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216399.1 2561046 R 439851 CDS YP_002216400.1 198245543 complement(2561278..2562216) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; HTH-type transcriptional regulator PecT 2562216 439851002772 SeD_A2676 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 HTH-type transcriptional regulator PecT YP_002216400.1 2561278 R 439851 CDS YP_002216401.1 198244428 complement(2562890..2563075) 1 NC_011205.1 hypothetical protein 2563075 439851002773 SeD_A2677 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216401.1 2562890 R 439851 CDS YP_002216402.1 198243725 2564466..2565065 1 NC_011205.1 identified by match to protein family HMM PF01966; hypothetical protein 2565065 439851002776 SeD_A2680 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216402.1 2564466 D 439851 CDS YP_002216403.1 198241792 complement(2565157..2566983) 1 NC_011205.1 identified by match to protein family HMM PF02080; match to protein family HMM PF03600; match to protein family HMM PF06808; citrate transporter 2566983 439851002777 SeD_A2681 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 citrate transporter YP_002216403.1 2565157 R 439851 CDS YP_002216404.1 198242424 complement(2567060..2567719) 1 NC_011205.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; phosphatase 2567719 439851002778 SeD_A2682 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphatase YP_002216404.1 2567060 R 439851 CDS YP_002216405.1 198245573 complement(2567730..2568269) 1 NC_011205.1 identified by match to protein family HMM PF03887; hypothetical protein 2568269 439851002779 SeD_A2683 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216405.1 2567730 R 439851 CDS YP_002216406.1 198246185 complement(2568307..2568762) 1 NC_011205.1 identified by match to protein family HMM PF04217; hypothetical protein 2568762 439851002780 SeD_A2684 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216406.1 2568307 R 439851 CDS YP_002216407.1 198244817 2568931..2569065 1 NC_011205.1 identified by glimmer; hypothetical protein 2569065 439851002781 SeD_A2685 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216407.1 2568931 D 439851 CDS YP_002216408.1 198244863 2569102..2570304 1 NC_011205.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2570304 ackA 439851002782 ackA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetate kinase YP_002216408.1 2569102 D 439851 CDS YP_002216409.1 198243957 2570381..2572525 1 NC_011205.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2572525 pta 439851002783 pta Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphate acetyltransferase YP_002216409.1 2570381 D 439851 CDS YP_002216410.1 198243414 2572743..2574263 1 NC_011205.1 identified by match to protein family HMM PF03606; hypothetical protein 2574263 439851002784 SeD_A2688 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216410.1 2572743 D 439851 CDS YP_002216411.1 198243378 complement(2574312..2575265) 1 NC_011205.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase domain-containing protein 2575265 439851002785 SeD_A2689 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transketolase domain-containing protein YP_002216411.1 2574312 R 439851 CDS YP_002216412.1 198242865 complement(2575258..2576088) 1 NC_011205.1 identified by match to protein family HMM PF00456; transketolase domain-containing protein 2576088 439851002786 SeD_A2690 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transketolase domain-containing protein YP_002216412.1 2575258 R 439851 CDS YP_002216413.1 198244608 complement(2576085..2577476) 1 NC_011205.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 2577476 ulaA 439851002787 ulaA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system ascorbate-specific transporter subunit IIC YP_002216413.1 2576085 R 439851 CDS YP_002216414.1 198244159 complement(2577497..2577769) 1 NC_011205.1 identified by match to protein family HMM PF02302; PTS system lactose/cellobiose-specific IIB subunit 2577769 439851002788 SeD_A2692 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system lactose/cellobiose-specific IIB subunit YP_002216414.1 2577497 R 439851 CDS YP_002216415.1 198245350 complement(2577850..2578293) 1 NC_011205.1 cryptic; identified by match to protein family HMM PF00359; PTS system mannitol-specific transporter subunit IIA 2578293 439851002789 SeD_A2694 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system mannitol-specific transporter subunit IIA YP_002216415.1 2577850 R 439851 CDS YP_002216416.1 198244598 2578292..2578465 1 NC_011205.1 identified by glimmer; hypothetical protein 2578465 439851002790 SeD_A2693 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216416.1 2578292 D 439851 CDS YP_002216417.1 198242148 2578546..2579565 1 NC_011205.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; regulatory protein LacI 2579565 439851002791 SeD_A2695 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 regulatory protein LacI YP_002216417.1 2578546 D 439851 CDS YP_002216418.1 198245844 complement(2579571..2580125) 1 NC_011205.1 identified by match to protein family HMM PF00293; nudix hydrolase 3 2580125 439851002792 SeD_A2696 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nudix hydrolase 3 YP_002216418.1 2579571 R 439851 CDS YP_002216419.1 198242795 complement(2580182..2580733) 1 NC_011205.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase 2580733 439851002793 SeD_A2697 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphodiesterase YP_002216419.1 2580182 R 439851 CDS YP_002216420.1 198244799 complement(2580789..2581433) 1 NC_011205.1 identified by match to protein family HMM PF02798; glutathione S-transferase domain-containing protein 2581433 439851002794 SeD_A2698 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione S-transferase domain-containing protein YP_002216420.1 2580789 R 439851 CDS YP_002216421.1 198243855 2581576..2582223 1 NC_011205.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase, N- domain 2582223 439851002795 SeD_A2699 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione S-transferase, N- domain YP_002216421.1 2581576 D 439851 CDS YP_002216422.1 198243238 2582349..2583242 1 NC_011205.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM PF08338; match to protein family HMM TIGR01777; hypothetical protein 2583242 439851002796 SeD_A2700 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216422.1 2582349 D 439851 CDS YP_002216423.1 198242817 complement(2583294..2584070) 1 NC_011205.1 identified by match to protein family HMM PF00005; histidine/lysine/arginine/ornithine transporter subunit 2584070 hisP 439851002797 hisP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 histidine/lysine/arginine/ornithine transporter subunit YP_002216423.1 2583294 R 439851 CDS YP_002216424.1 198242278 complement(2584081..2584788) 1 NC_011205.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; histidine ABC transporter permease HisM 2584788 hisM 439851002798 hisM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 histidine ABC transporter permease HisM YP_002216424.1 2584081 R 439851 CDS YP_002216425.1 198243854 complement(2584785..2585471) 1 NC_011205.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; histidine ABC transporter permease HisQ 2585471 hisQ 439851002799 hisQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 histidine ABC transporter permease HisQ YP_002216425.1 2584785 R 439851 CDS YP_002216426.1 198243211 complement(2585654..2586436) 1 NC_011205.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; lysine-arginine-ornithine-binding periplasmic protein 2586436 439851002800 SeD_A2704 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lysine-arginine-ornithine-binding periplasmic protein YP_002216426.1 2585654 R 439851 CDS YP_002216427.1 198242827 complement(2586674..2587456) 1 NC_011205.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096; lysine-arginine-ornithine-binding periplasmic protein 2587456 439851002801 SeD_A2705 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lysine-arginine-ornithine-binding periplasmic protein YP_002216427.1 2586674 R 439851 CDS YP_002216428.1 198242207 2587534..2587656 1 NC_011205.1 hypothetical protein 2587656 439851002802 SeD_A2706 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216428.1 2587534 D 439851 CDS YP_002216429.1 198245786 complement(2587745..2588314) 1 NC_011205.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2588314 439851002803 SeD_A2707 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_002216429.1 2587745 R 439851 CDS YP_002216430.1 198245076 complement(2588341..2589747) 1 NC_011205.1 identified by match to protein family HMM PF00324; amino acid transporter 2589747 439851002804 SeD_A2708 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 amino acid transporter YP_002216430.1 2588341 R 439851 CDS YP_002216431.1 198242172 complement(2589811..2590914) 1 NC_011205.1 identified by match to protein family HMM PF01168; amino acid racemase 2590914 439851002805 SeD_A2709 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 amino acid racemase YP_002216431.1 2589811 R 439851 CDS YP_002216432.1 198245886 complement(2590916..2592337) 1 NC_011205.1 identified by match to protein family HMM PF00324; amino acid transporter 2592337 439851002806 SeD_A2710 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 amino acid transporter YP_002216432.1 2590916 R 439851 CDS YP_002216433.1 198242305 complement(2592428..2593825) 1 NC_011205.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; diaminopimelate decarboxylase 2593825 439851002807 SeD_A2711 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 diaminopimelate decarboxylase YP_002216433.1 2592428 R 439851 CDS YP_002216434.1 198241821 2594036..2595463 1 NC_011205.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM PF08448; match to protein family HMM TIGR00229; regulatory protein 2595463 439851002808 SeD_A2712 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 regulatory protein YP_002216434.1 2594036 D 439851 CDS YP_002216435.1 198242494 complement(2595499..2597016) 1 NC_011205.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2597016 purF 439851002809 purF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 amidophosphoribosyltransferase YP_002216435.1 2595499 R 439851 CDS YP_002216436.1 198241924 complement(2597054..2597542) 1 NC_011205.1 membrane protein required for colicin V production; colicin V production protein 2597542 cvpA 439851002810 cvpA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 colicin V production protein YP_002216436.1 2597054 R 439851 CDS YP_002216437.1 198246021 complement(2597853..2598527) 1 NC_011205.1 identified by match to protein family HMM PF05036; hypothetical protein 2598527 439851002811 SeD_A2715 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216437.1 2597853 R 439851 CDS YP_002216438.1 198245520 complement(2598517..2599785) 1 NC_011205.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 2599785 folC 439851002812 folC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_002216438.1 2598517 R 439851 CDS YP_002216439.1 198245011 complement(2599853..2600767) 1 NC_011205.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 2600767 accD 439851002813 accD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetyl-CoA carboxylase subunit beta YP_002216439.1 2599853 R 439851 CDS YP_002216440.1 198245853 complement(2600917..2601576) 1 NC_011205.1 identified by match to protein family HMM PF09335; hypothetical protein 2601576 439851002814 SeD_A2718 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216440.1 2600917 R 439851 CDS YP_002216441.1 198245997 complement(2601625..2602437) 1 NC_011205.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 2602437 truA 439851002815 truA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA pseudouridine synthase A YP_002216441.1 2601625 R 439851 CDS YP_002216442.1 198244778 complement(2602437..2603450) 1 NC_011205.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; semialdehyde dehydrogenase 2603450 439851002816 SeD_A2720 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 semialdehyde dehydrogenase YP_002216442.1 2602437 R 439851 CDS YP_002216443.1 198244086 complement(2603518..2604654) 1 NC_011205.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; erythronate-4-phosphate dehydrogenase 2604654 pdxB 439851002817 pdxB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 erythronate-4-phosphate dehydrogenase YP_002216443.1 2603518 R 439851 CDS YP_002216444.1 198243403 2604758..2605759 1 NC_011205.1 in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; flagella biosynthesis regulator 2605759 flk 439851002818 flk Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flagella biosynthesis regulator YP_002216444.1 2604758 D 439851 CDS YP_002216445.1 198242059 2606933..2607049 1 NC_011205.1 identified by glimmer; hypothetical protein 2607049 439851002820 SeD_A2724 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216445.1 2606933 D 439851 CDS YP_002216446.1 198242700 complement(2607114..2607488) 1 NC_011205.1 hypothetical protein 2607488 439851002821 SeD_A2726 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216446.1 2607114 R 439851 CDS YP_002216447.1 198244734 2608078..2608446 1 NC_011205.1 hypothetical protein 2608446 439851002823 SeD_A2728 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216447.1 2608078 D 439851 CDS YP_002216448.1 198242944 2608446..2608964 1 NC_011205.1 hypothetical protein 2608964 439851002824 SeD_A2729 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216448.1 2608446 D 439851 CDS YP_002216449.1 198242099 complement(2609031..2609642) 1 NC_011205.1 identified by match to protein family HMM PF02517; inner membrane protein 2609642 439851002825 SeD_A2730 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002216449.1 2609031 R 439851 CDS YP_002216450.1 198242741 complement(2609785..2610999) 1 NC_011205.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 2610999 439851002826 SeD_A2731 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-oxoacyl-ACP synthase YP_002216450.1 2609785 R 439851 CDS YP_002216451.1 198245335 2611159..2613159 1 NC_011205.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 2613159 mnmC 439851002827 mnmC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 5-methylaminomethyl-2-thiouridine methyltransferase YP_002216451.1 2611159 D 439851 CDS YP_002216452.1 198245973 complement(2613211..2613486) 1 NC_011205.1 identified by match to protein family HMM PF08891; hypothetical protein 2613486 439851002828 SeD_A2733 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216452.1 2613211 R 439851 CDS YP_002216453.1 198245303 complement(2613519..2614067) 1 NC_011205.1 identified by match to protein family HMM PF04315; hypothetical protein 2614067 439851002829 SeD_A2734 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216453.1 2613519 R 439851 CDS YP_002216454.1 198245940 complement(2614067..2614876) 1 NC_011205.1 identified by match to protein family HMM PF01925; hypothetical protein 2614876 439851002830 SeD_A2735 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216454.1 2614067 R 439851 CDS YP_002216455.1 198244022 complement(2614876..2615700) 1 NC_011205.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 2615700 mepA 439851002831 mepA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 penicillin-insensitive murein endopeptidase YP_002216455.1 2614876 R 439851 CDS YP_002216456.1 198244630 complement(2615704..2616789) 1 NC_011205.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2616789 aroC 439851002832 aroC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chorismate synthase YP_002216456.1 2615704 R 439851 CDS YP_002216457.1 198242387 2617923..2618474 1 NC_011205.1 identified by match to protein family HMM PF01713; hypothetical protein 2618474 439851002834 SeD_A2739 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216457.1 2617923 D 439851 CDS YP_002216458.1 198243628 2618437..2618577 1 NC_011205.1 identified by glimmer; hypothetical protein 2618577 439851002835 SeD_A2740 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216458.1 2618437 D 439851 CDS YP_002216459.1 198243164 complement(2618574..2619059) 1 NC_011205.1 identified by match to protein family HMM TIGR00249; phosphohistidine phosphatase 2619059 sixA 439851002836 sixA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphohistidine phosphatase YP_002216459.1 2618574 R 439851 CDS YP_002216460.1 198244761 complement(2619268..2621415) 1 NC_011205.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 2621415 fadJ 439851002837 fadJ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multifunctional fatty acid oxidation complex subunit alpha YP_002216460.1 2619268 R 439851 CDS YP_002216461.1 198244949 complement(2621415..2622725) 1 NC_011205.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 2622725 fadI 439851002838 fadI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-ketoacyl-CoA thiolase YP_002216461.1 2621415 R 439851 CDS YP_002216462.1 198246206 2623560..2624867 1 NC_011205.1 identified by match to protein family HMM PF03349; long-chain fatty acid outer membrane transporter 2624867 439851002840 SeD_A2745 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 long-chain fatty acid outer membrane transporter YP_002216462.1 2623560 D 439851 CDS YP_002216463.1 198243765 complement(2624928..2625683) 1 NC_011205.1 identified by match to protein family HMM PF04333; lipoprotein, VacJ family 2625683 439851002841 SeD_A2746 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein, VacJ family YP_002216463.1 2624928 R 439851 CDS YP_002216464.1 198244565 2625972..2626913 1 NC_011205.1 hypothetical protein 2626913 439851002842 SeD_A2747 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216464.1 2625972 D 439851 CDS YP_002216465.1 198244484 2627740..2627865 1 NC_011205.1 identified by glimmer; hypothetical protein 2627865 439851002844 SeD_A2749 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216465.1 2627740 D 439851 CDS YP_002216466.1 198243478 2628156..2628545 1 NC_011205.1 identified by match to protein family HMM PF04138; bactoprenol-linked glucose transferase 2628545 439851002845 SeD_A2750 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bactoprenol-linked glucose transferase YP_002216466.1 2628156 D 439851 CDS YP_002216467.1 198244472 2628786..2630708 1 NC_011205.1 identified by match to protein family HMM PF01757; acyltransferase 2630708 439851002846 SeD_A2751 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acyltransferase YP_002216467.1 2628786 D 439851 CDS YP_002216468.1 198245159 complement(2632196..2633134) 1 NC_011205.1 outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA; outer membrane protease 2633134 439851002848 SeD_A2753 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protease YP_002216468.1 2632196 R 439851 CDS YP_002216469.1 198242078 complement(2633402..2634649) 1 NC_011205.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; phosphoglycerate transport system transcriptional regulator pgtA 2634649 439851002849 SeD_A2754 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoglycerate transport system transcriptional regulator pgtA YP_002216469.1 2633402 R 439851 CDS YP_002216470.1 198242695 complement(2634639..2636645) 1 NC_011205.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; phosphoglycerate transport system sensor protein PgtB 2636645 439851002850 SeD_A2755 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoglycerate transport system sensor protein PgtB YP_002216470.1 2634639 R 439851 CDS YP_002216471.1 198243333 complement(2637879..2638139) 1 NC_011205.1 hypothetical protein 2638139 439851002852 SeD_A2758 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216471.1 2637879 R 439851 CDS YP_002216472.1 198245391 2638271..2639662 1 NC_011205.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00881; phosphoglycerate transporter 2639662 439851002853 SeD_A2759 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoglycerate transporter YP_002216472.1 2638271 D 439851 CDS YP_002216473.1 198245860 complement(2639937..2640179) 1 NC_011205.1 hypothetical protein 2640179 439851002854 SeD_A2760 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216473.1 2639937 R 439851 CDS YP_002216474.1 198244154 complement(2640339..2640452) 1 NC_011205.1 identified by glimmer; hypothetical protein 2640452 439851002855 SeD_A2761 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216474.1 2640339 R 439851 CDS YP_002216475.1 198244080 2641735..2641857 1 NC_011205.1 identified by glimmer; hypothetical protein 2641857 439851002857 SeD_A2763 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216475.1 2641735 D 439851 CDS YP_002216476.1 198244682 complement(2642144..2643382) 1 NC_011205.1 identified by match to protein family HMM PF00155; aminotransferase 2643382 439851002858 SeD_A2764 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aminotransferase YP_002216476.1 2642144 R 439851 CDS YP_002216477.1 198243952 complement(2644105..2645070) 1 NC_011205.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 2645070 glk 439851002859 glk Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucokinase YP_002216477.1 2644105 R 439851 CDS YP_002216478.1 198242286 2645274..2646509 1 NC_011205.1 hypothetical protein 2646509 439851002860 SeD_A2766 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216478.1 2645274 D 439851 CDS YP_002216479.1 198243940 2648249..2648365 1 NC_011205.1 identified by glimmer; hypothetical protein 2648365 439851002862 SeD_A2769 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216479.1 2648249 D 439851 CDS YP_002216480.1 198242147 2648362..2649360 1 NC_011205.1 identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family 2649360 439851002863 SeD_A2770 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxidoreductase, aldo/keto reductase family YP_002216480.1 2648362 D 439851 CDS YP_002216481.1 198246137 2649474..2649800 1 NC_011205.1 hypothetical protein 2649800 439851002864 SeD_A2771 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216481.1 2649474 D 439851 CDS YP_002216482.1 198245614 complement(2649861..2651039) 1 NC_011205.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197; manganese transport protein MntH 2651039 439851002865 SeD_A2772 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 manganese transport protein MntH YP_002216482.1 2649861 R 439851 CDS YP_002216483.1 198244572 2651445..2652647 1 NC_011205.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804; nucleoside transporter NupC 2652647 nupC 439851002866 nupC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nucleoside transporter NupC YP_002216483.1 2651445 D 439851 CDS YP_002216484.1 198244115 complement(2652700..2654889) 1 NC_011205.1 identified by match to protein family HMM PF00563; match to protein family HMM PF05231; cyclic diguanylate phosphodiesterase domain-containing protein 2654889 439851002867 SeD_A2774 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cyclic diguanylate phosphodiesterase domain-containing protein YP_002216484.1 2652700 R 439851 CDS YP_002216485.1 198243721 2655510..2655857 1 NC_011205.1 identified by match to protein family HMM PF07037; hypothetical protein 2655857 439851002870 SeD_A2777 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216485.1 2655510 D 439851 CDS YP_002216486.1 198243764 2655859..2656251 1 NC_011205.1 identified by match to protein family HMM PF07037; hypothetical protein 2656251 439851002871 SeD_A2778 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216486.1 2655859 D 439851 CDS YP_002216487.1 198243251 complement(2656305..2657720) 1 NC_011205.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2657720 gltX 439851002872 gltX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamyl-tRNA synthetase YP_002216487.1 2656305 R 439851 CDS YP_002216488.1 198245989 complement(2658638..2659522) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional activator XapR 2659522 439851002877 SeD_A2784 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional activator XapR YP_002216488.1 2658638 R 439851 CDS YP_002216489.1 198243634 complement(2659574..2659732) 1 NC_011205.1 hypothetical protein 2659732 439851002878 SeD_A2785 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216489.1 2659574 R 439851 CDS YP_002216490.1 198245553 complement(2659791..2661047) 1 NC_011205.1 identified by match to protein family HMM PF03825; match to protein family HMM PF07690; match to protein family HMM TIGR00889; nucleoside permease NupG 2661047 nupG 439851002879 nupG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nucleoside permease NupG YP_002216490.1 2659791 R 439851 CDS YP_002216491.1 198244642 complement(2661102..2661935) 1 NC_011205.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 2661935 xapA 439851002880 xapA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 purine nucleoside phosphorylase YP_002216491.1 2661102 R 439851 CDS YP_002216492.1 198242051 2662191..2662952 1 NC_011205.1 identified by match to protein family HMM PF07135; hypothetical protein 2662952 439851002881 SeD_A2788 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216492.1 2662191 D 439851 CDS YP_002216493.1 198246241 complement(2663014..2663940) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; OsmT protein 2663940 439851002882 SeD_A2789 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 OsmT protein YP_002216493.1 2663014 R 439851 CDS YP_002216494.1 198242720 2664030..2665028 1 NC_011205.1 identified by match to protein family HMM PF01758; bile acid/Na+ symporter family transporter 2665028 439851002883 SeD_A2790 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bile acid/Na+ symporter family transporter YP_002216494.1 2664030 D 439851 CDS YP_002216495.1 198242521 complement(2665025..2665243) 1 NC_011205.1 hypothetical protein 2665243 439851002884 SeD_A2791 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216495.1 2665025 R 439851 CDS YP_002216496.1 198243638 complement(2665245..2667260) 1 NC_011205.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 2667260 ligA 439851002885 ligA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NAD-dependent DNA ligase LigA YP_002216496.1 2665245 R 439851 CDS YP_002216497.1 198242910 complement(2667332..2668318) 1 NC_011205.1 interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA 2668318 zipA 439851002886 zipA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell division protein ZipA YP_002216497.1 2667332 R 439851 CDS YP_002216498.1 198244866 2668448..2669311 1 NC_011205.1 role in sulfur assimilation; sulfate transport protein CysZ 2669311 439851002887 SeD_A2794 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfate transport protein CysZ YP_002216498.1 2668448 D 439851 CDS YP_002216499.1 198242204 2669475..2670446 1 NC_011205.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 2670446 cysK 439851002888 cysK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cysteine synthase A YP_002216499.1 2669475 D 439851 CDS YP_002216500.1 198245700 complement(2670565..2670690) 1 NC_011205.1 hypothetical protein 2670690 439851002889 SeD_A2796 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216500.1 2670565 R 439851 CDS YP_002216501.1 198242845 2670830..2671087 1 NC_011205.1 Hpr; identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr 2671087 ptsH 439851002890 ptsH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr YP_002216501.1 2670830 D 439851 CDS YP_002216502.1 198244707 2671136..2672863 1 NC_011205.1 Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase 2672863 ptsI 439851002891 ptsI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoenolpyruvate-protein phosphotransferase YP_002216502.1 2671136 D 439851 CDS YP_002216503.1 198244114 2672904..2673413 1 NC_011205.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter subunit 2673413 crr 439851002892 crr Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system glucose-specific transporter subunit YP_002216503.1 2672904 D 439851 CDS YP_002216504.1 198243388 complement(2673563..2673802) 1 NC_011205.1 hypothetical protein 2673802 439851002893 SeD_A2800 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216504.1 2673563 R 439851 CDS YP_002216505.1 198244998 complement(2673799..2674665) 1 NC_011205.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase 2674665 pdxK 439851002894 pdxK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pyridoxal kinase YP_002216505.1 2673799 R 439851 CDS YP_002216506.1 198241953 2674748..2676040 1 NC_011205.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 2676040 439851002895 SeD_A2802 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GntR family transcriptional regulator YP_002216506.1 2674748 D 439851 CDS YP_002216507.1 198243881 2676055..2676774 1 NC_011205.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 2676774 439851002896 SeD_A2803 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamine amidotransferase YP_002216507.1 2676055 D 439851 CDS YP_002216508.1 198245139 2676833..2677213 1 NC_011205.1 hypothetical protein 2677213 439851002897 SeD_A2804 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216508.1 2676833 D 439851 CDS YP_002216509.1 198242390 2677226..2677765 1 NC_011205.1 membrane carboxypeptidase 2677765 439851002898 SeD_A2805 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 membrane carboxypeptidase YP_002216509.1 2677226 D 439851 CDS YP_002216510.1 198244999 complement(2677896..2678807) 1 NC_011205.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 2678807 cysM 439851002899 cysM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cysteine synthase B YP_002216510.1 2677896 R 439851 CDS YP_002216511.1 198245645 complement(2678875..2679972) 1 NC_011205.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00968; sulfate/thiosulfate transporter subunit 2679972 cysA 439851002900 cysA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfate/thiosulfate transporter subunit YP_002216511.1 2678875 R 439851 CDS YP_002216512.1 198244467 complement(2679962..2680837) 1 NC_011205.1 Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; sulfate/thiosulfate transporter permease subunit 2680837 cysW 439851002901 cysW Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfate/thiosulfate transporter permease subunit YP_002216512.1 2679962 R 439851 CDS YP_002216513.1 198245088 complement(2680837..2681670) 1 NC_011205.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139; sulfate/thiosulfate transporter subunit 2681670 cysT 439851002902 cysT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfate/thiosulfate transporter subunit YP_002216513.1 2680837 R 439851 CDS YP_002216514.1 198242952 complement(2681670..2682686) 1 NC_011205.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971; thiosulfate transporter subunit 2682686 cysP 439851002903 cysP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiosulfate transporter subunit YP_002216514.1 2681670 R 439851 CDS YP_002216515.1 198243547 complement(2682844..2683635) 1 NC_011205.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; short chain dehydrogenase 2683635 fabG 439851002904 fabG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 short chain dehydrogenase YP_002216515.1 2682844 R 439851 CDS YP_002216516.1 198242579 complement(2683873..2684772) 1 NC_011205.1 identified by match to protein family HMM PF04261; match to protein family HMM TIGR01413; Dyp-type peroxidase family protein 2684772 439851002905 SeD_A2812 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Dyp-type peroxidase family protein YP_002216516.1 2683873 R 439851 CDS YP_002216517.1 198242932 complement(2684867..2685442) 1 NC_011205.1 identified by match to protein family HMM PF06572; hypothetical protein 2685442 439851002906 SeD_A2813 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216517.1 2684867 R 439851 CDS YP_002216518.1 198245437 complement(2685504..2685953) 1 NC_011205.1 hypothetical protein 2685953 439851002907 SeD_A2814 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216518.1 2685504 R 439851 CDS YP_002216519.1 198245754 complement(2685940..2686365) 1 NC_011205.1 identified by match to protein family HMM PF00583; acetyltransferase 2686365 439851002908 SeD_A2815 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetyltransferase YP_002216519.1 2685940 R 439851 CDS YP_002216520.1 198242319 2686578..2687447 1 NC_011205.1 identified by match to protein family HMM PF01520; match to protein family HMM TIGR01409; N-acetylmuramoyl-l-alanine amidase I 2687447 amiA 439851002909 amiA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N-acetylmuramoyl-l-alanine amidase I YP_002216520.1 2686578 D 439851 CDS YP_002216521.1 198242264 2687450..2688349 1 NC_011205.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2688349 hemF 439851002910 hemF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 coproporphyrinogen III oxidase YP_002216521.1 2687450 D 439851 CDS YP_002216522.1 198243817 2688511..2688699 1 NC_011205.1 hypothetical protein 2688699 439851002911 SeD_A2818 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216522.1 2688511 D 439851 CDS YP_002216523.1 198244400 2689982..2690104 1 NC_011205.1 hypothetical protein 2690104 439851002913 SeD_A2820 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216523.1 2689982 D 439851 CDS YP_002216524.1 198244204 complement(2690304..2691356) 1 NC_011205.1 activates the transcription of the ethanolamine utilization operon; transcriptional regulator EutR 2691356 439851002914 SeD_A2821 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator EutR YP_002216524.1 2690304 R 439851 CDS YP_002216525.1 198245942 complement(2691404..2691898) 1 NC_011205.1 identified by match to protein family HMM PF00936; ethanolamine utilization protein EutK 2691898 439851002915 SeD_A2822 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ethanolamine utilization protein EutK YP_002216525.1 2691404 R 439851 CDS YP_002216526.1 198245224 complement(2691911..2692570) 1 NC_011205.1 identified by match to protein family HMM PF00936; ethanolamine utilization protein EutL 2692570 439851002916 SeD_A2823 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ethanolamine utilization protein EutL YP_002216526.1 2691911 R 439851 CDS YP_002216527.1 198241836 complement(2692580..2693476) 1 NC_011205.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 2693476 eutC 439851002917 eutC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ethanolamine ammonia-lyase small subunit YP_002216527.1 2692580 R 439851 CDS YP_002216528.1 198245031 complement(2693495..2694856) 1 NC_011205.1 identified by match to protein family HMM PF06751; ethanolamine ammonia-lyase large subunit 2694856 eutB 439851002918 eutB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ethanolamine ammonia-lyase large subunit YP_002216528.1 2693495 R 439851 CDS YP_002216529.1 198243419 complement(2694868..2696271) 1 NC_011205.1 ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase 2696271 eutA 439851002919 eutA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 reactivating factor for ethanolamine ammonia lyase YP_002216529.1 2694868 R 439851 CDS YP_002216530.1 198244501 complement(2696268..2697494) 1 NC_011205.1 identified by match to protein family HMM PF04346; ethanolamine utilization protein EutH 2697494 eutH 439851002920 eutH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ethanolamine utilization protein EutH YP_002216530.1 2696268 R 439851 CDS YP_002216531.1 198244858 complement(2697614..2698801) 1 NC_011205.1 identified by match to protein family HMM PF00465; ethanolamine utilization protein EutG 2698801 439851002921 SeD_A2828 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ethanolamine utilization protein EutG YP_002216531.1 2697614 R 439851 CDS YP_002216532.1 198245478 complement(2698791..2699630) 1 NC_011205.1 identified by match to protein family HMM TIGR02529; ethanolamine utilization protein EutJ 2699630 eutJ 439851002922 eutJ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ethanolamine utilization protein EutJ YP_002216532.1 2698791 R 439851 CDS YP_002216533.1 198245275 complement(2699641..2701044) 1 NC_011205.1 identified by match to protein family HMM PF00171; ethanolamine utilization protein EutE 2701044 eutE 439851002923 eutE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ethanolamine utilization protein EutE YP_002216533.1 2699641 R 439851 CDS YP_002216534.1 198242916 complement(2701787..2702803) 1 NC_011205.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 2702803 eutD 439851002926 eutD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphotransacetylase YP_002216534.1 2701787 R 439851 CDS YP_002216535.1 198243544 complement(2702800..2703603) 1 NC_011205.1 identified by match to protein family HMM PF01923; ethanolamine utilization cobalamin adenosyltransferase 2703603 439851002927 SeD_A2834 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ethanolamine utilization cobalamin adenosyltransferase YP_002216535.1 2702800 R 439851 CDS YP_002216536.1 198244683 complement(2703600..2704289) 1 NC_011205.1 identified by match to protein family HMM PF05899; match to protein family HMM PF06249; ethanolamine utilization protein EutQ 2704289 439851002928 SeD_A2835 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ethanolamine utilization protein EutQ YP_002216536.1 2703600 R 439851 CDS YP_002216537.1 198244075 complement(2704267..2704746) 1 NC_011205.1 identified by match to protein family HMM TIGR02528; ethanolamine utilization protein, EutP 2704746 eutP 439851002929 eutP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ethanolamine utilization protein, EutP YP_002216537.1 2704267 R 439851 CDS YP_002216538.1 198245443 complement(2704759..2705094) 1 NC_011205.1 identified by match to protein family HMM PF00936; ethanolamine utilization protein EutS 2705094 439851002930 SeD_A2837 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ethanolamine utilization protein EutS YP_002216538.1 2704759 R 439851 CDS YP_002216539.1 198245374 complement(2705511..2707790) 1 NC_011205.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 2707790 439851002931 SeD_A2838 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 malic enzyme YP_002216539.1 2705511 R 439851 CDS YP_002216540.1 198242220 2708062..2709012 1 NC_011205.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874; transaldolase A 2709012 tal1 439851002932 tal1 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transaldolase A YP_002216540.1 2708062 D 439851 CDS YP_002216541.1 198246103 2709032..2711032 1 NC_011205.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 2711032 tkt 439851002933 tkt Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transketolase YP_002216541.1 2709032 D 439851 CDS YP_002216542.1 198242909 complement(2711095..2711325) 1 NC_011205.1 hypothetical protein 2711325 439851002934 SeD_A2841 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216542.1 2711095 R 439851 CDS YP_002216543.1 198242837 complement(2711453..2712496) 1 NC_011205.1 identified by match to protein family HMM PF06674; hypothetical protein 2712496 439851002935 SeD_A2842 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216543.1 2711453 R 439851 CDS YP_002216544.1 198244300 complement(2712621..2713196) 1 NC_011205.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052; hydrolase YffH 2713196 439851002936 SeD_A2843 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrolase YffH YP_002216544.1 2712621 R 439851 CDS YP_002216545.1 198243226 2713400..2714698 1 NC_011205.1 identified by match to protein family HMM PF00144; hypothetical protein 2714698 439851002937 SeD_A2844 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216545.1 2713400 D 439851 CDS YP_002216546.1 198243858 complement(2715147..2717108) 1 NC_011205.1 unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic); oxidoreductase Fe-S binding subunit 2717108 439851002938 SeD_A2845 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxidoreductase Fe-S binding subunit YP_002216546.1 2715147 R 439851 CDS YP_002216547.1 198243408 2717294..2718994 1 NC_011205.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730; nitrate/nitrite sensor protein NarQ 2718994 439851002939 SeD_A2846 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitrate/nitrite sensor protein NarQ YP_002216547.1 2717294 D 439851 CDS YP_002216548.1 198242871 2719179..2722292 1 NC_011205.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; aminoglycoside/multidrug efflux system 2722292 acrD 439851002940 acrD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aminoglycoside/multidrug efflux system YP_002216548.1 2719179 D 439851 CDS YP_002216549.1 198242221 2722866..2723222 1 NC_011205.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; hypothetical protein 2723222 439851002941 SeD_A2848 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216549.1 2722866 D 439851 CDS YP_002216550.1 198245701 2723226..2724353 1 NC_011205.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2724353 dapE 439851002942 dapE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 succinyl-diaminopimelate desuccinylase YP_002216550.1 2723226 D 439851 CDS YP_002216551.1 198245368 2724381..2724581 1 NC_011205.1 hypothetical protein 2724581 439851002943 SeD_A2850 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216551.1 2724381 D 439851 CDS YP_002216552.1 198244753 complement(2724608..2726626) 1 NC_011205.1 identified by match to protein family HMM PF00583; match to protein family HMM PF05127; acetyltransferase 2726626 439851002944 SeD_A2851 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetyltransferase YP_002216552.1 2724608 R 439851 CDS YP_002216553.1 198244284 complement(2726642..2727505) 1 NC_011205.1 identified by match to protein family HMM PF04228; zinc protease 2727505 439851002945 SeD_A2852 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 zinc protease YP_002216553.1 2726642 R 439851 CDS YP_002216554.1 198243232 complement(2727636..2728349) 1 NC_011205.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 2728349 purC 439851002946 purC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_002216554.1 2727636 R 439851 CDS YP_002216555.1 198244965 complement(2728524..2729558) 1 NC_011205.1 identified by match to protein family HMM PF06804; lipoprotein 2729558 439851002947 SeD_A2854 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein YP_002216555.1 2728524 R 439851 CDS YP_002216556.1 198243993 complement(2729575..2730453) 1 NC_011205.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2730453 dapA 439851002948 dapA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dihydrodipicolinate synthase YP_002216556.1 2729575 R 439851 CDS YP_002216557.1 198243775 2730599..2731171 1 NC_011205.1 negative transcriptional regulator of the gcvTHP operon; glycine cleavage system transcriptional repressor 2731171 gcvR 439851002949 gcvR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycine cleavage system transcriptional repressor YP_002216557.1 2730599 D 439851 CDS YP_002216558.1 198243671 2731171..2731641 1 NC_011205.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2731641 bcp 439851002950 bcp Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thioredoxin-dependent thiol peroxidase YP_002216558.1 2731171 D 439851 CDS YP_002216559.1 198243037 complement(2731688..2732827) 1 NC_011205.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 2732827 439851002951 SeD_A2858 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycerate kinase YP_002216559.1 2731688 R 439851 CDS YP_002216560.1 198244670 complement(2732833..2734101) 1 NC_011205.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; gluconate transporter 2734101 439851002952 SeD_A2859 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gluconate transporter YP_002216560.1 2732833 R 439851 CDS YP_002216561.1 198245778 complement(2734169..2735332) 1 NC_011205.1 identified by match to protein family HMM PF05651; transcriptional regulator CdaR 2735332 439851002953 SeD_A2860 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator CdaR YP_002216561.1 2734169 R 439851 CDS YP_002216562.1 198245669 complement(2735633..2736721) 1 NC_011205.1 identified by match to protein family HMM PF01594; permease PerM 2736721 439851002954 SeD_A2861 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 permease PerM YP_002216562.1 2735633 R 439851 CDS YP_002216563.1 198242783 2736908..2738371 1 NC_011205.1 identified by match to protein family HMM PF01435; TPR repeat-containing protein YfgC 2738371 439851002955 SeD_A2862 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 TPR repeat-containing protein YfgC YP_002216563.1 2736908 D 439851 CDS YP_002216564.1 198242154 2738411..2738770 1 NC_011205.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014; arsenate reductase 2738770 arsC 439851002956 arsC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arsenate reductase YP_002216564.1 2738411 D 439851 CDS YP_002216565.1 198242062 complement(2738797..2739522) 1 NC_011205.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 2739522 439851002957 SeD_A2864 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA replication initiation factor YP_002216565.1 2738797 R 439851 CDS YP_002216566.1 198246055 complement(2739593..2740882) 1 NC_011205.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil transporter 2740882 uraA 439851002958 uraA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 uracil transporter YP_002216566.1 2739593 R 439851 CDS YP_002216567.1 198242862 complement(2740970..2741596) 1 NC_011205.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2741596 upp 439851002959 upp Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 uracil phosphoribosyltransferase YP_002216567.1 2740970 R 439851 CDS YP_002216568.1 198243204 2741831..2741974 1 NC_011205.1 identified by glimmer; hypothetical protein 2741974 439851002960 SeD_A2867 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216568.1 2741831 D 439851 CDS YP_002216569.1 198243577 2742009..2743046 1 NC_011205.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2743046 purM 439851002961 purM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoribosylaminoimidazole synthetase YP_002216569.1 2742009 D 439851 CDS YP_002216570.1 198244461 2743046..2743684 1 NC_011205.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2743684 purN 439851002962 purN Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoribosylglycinamide formyltransferase YP_002216570.1 2743046 D 439851 CDS YP_002216571.1 198244151 2743873..2745939 1 NC_011205.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2745939 ppk 439851002963 ppk Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 polyphosphate kinase YP_002216571.1 2743873 D 439851 CDS YP_002216572.1 198244636 2745905..2747485 1 NC_011205.1 identified by match to protein family HMM PF02541; exopolyphosphatase 2747485 439851002964 SeD_A2871 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 exopolyphosphatase YP_002216572.1 2745905 D 439851 CDS YP_002216573.1 198245324 complement(2747521..2749734) 1 NC_011205.1 identified by match to protein family HMM PF00563; match to protein family HMM PF05231; cyclic diguanylate phosphodiesterase domain-containing protein 2749734 439851002965 SeD_A2872 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cyclic diguanylate phosphodiesterase domain-containing protein YP_002216573.1 2747521 R 439851 CDS YP_002216574.1 198245928 2750195..2750338 1 NC_011205.1 inner membrane protein 2750338 439851002966 SeD_A2873 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002216574.1 2750195 D 439851 CDS YP_002216575.1 198245648 complement(2751892..2753469) 1 NC_011205.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2753469 guaA 439851002968 guaA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GMP synthase YP_002216575.1 2751892 R 439851 CDS YP_002216576.1 198245073 complement(2753539..2755005) 1 NC_011205.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 2755005 guaB 439851002969 guaB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inosine 5'-monophosphate dehydrogenase YP_002216576.1 2753539 R 439851 CDS YP_002216577.1 198243207 2755166..2756515 1 NC_011205.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2756515 xseA 439851002970 xseA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 exodeoxyribonuclease VII large subunit YP_002216577.1 2755166 D 439851 CDS YP_002216578.1 198245369 complement(2769554..2771245) 1 NC_011205.1 identified by match to protein family HMM PF05688; match to protein family HMM PF05689; hypothetical protein 2771245 439851002974 SeD_A2881 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216578.1 2769554 R 439851 CDS YP_002216579.1 198246076 complement(2775270..2776229) 1 NC_011205.1 outer membrane protein 2776229 439851002976 SeD_A2884 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein YP_002216579.1 2775270 R 439851 CDS YP_002216580.1 198243618 2776184..2776306 1 NC_011205.1 identified by glimmer; hypothetical protein 2776306 439851002977 SeD_A2883 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216580.1 2776184 D 439851 CDS YP_002216581.1 198243179 complement(2776287..2778479) 1 NC_011205.1 hypothetical protein 2778479 439851002978 SeD_A2885 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216581.1 2776287 R 439851 CDS YP_002216582.1 198244496 complement(2778825..2779046) 1 NC_011205.1 identified by match to protein family HMM PF07191; hypothetical protein 2779046 439851002979 SeD_A2886 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216582.1 2778825 R 439851 CDS YP_002216583.1 198243095 complement(2780724..2781902) 1 NC_011205.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 2781902 439851002981 SeD_A2888 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein assembly complex subunit YfgL YP_002216583.1 2780724 R 439851 CDS YP_002216584.1 198243484 complement(2781913..2782533) 1 NC_011205.1 hypothetical protein 2782533 439851002982 SeD_A2889 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216584.1 2781913 R 439851 CDS YP_002216585.1 198241839 complement(2782547..2783821) 1 NC_011205.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2783821 hisS 439851002983 hisS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 histidyl-tRNA synthetase YP_002216585.1 2782547 R 439851 CDS YP_002216586.1 198243362 complement(2783932..2785050) 1 NC_011205.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2785050 ispG 439851002985 ispG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_002216586.1 2783932 R 439851 CDS YP_002216587.1 198246023 complement(2785077..2786081) 1 NC_011205.1 identified by match to protein family HMM PF01381; cytoskeletal protein RodZ 2786081 439851002986 SeD_A2893 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytoskeletal protein RodZ YP_002216587.1 2785077 R 439851 CDS YP_002216588.1 198242050 complement(2786218..2786340) 1 NC_011205.1 type IV pilus biogenesis/stability protein PilW 2786340 439851002987 SeD_A2894 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type IV pilus biogenesis/stability protein PilW YP_002216588.1 2786218 R 439851 CDS YP_002216589.1 198245006 complement(2786373..2787539) 1 NC_011205.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 2787539 439851002988 SeD_A2895 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribosomal RNA large subunit methyltransferase N YP_002216589.1 2786373 R 439851 CDS YP_002216590.1 198244218 complement(2787746..2788177) 1 NC_011205.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 2788177 ndk 439851002989 ndk Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nucleoside diphosphate kinase YP_002216590.1 2787746 R 439851 CDS YP_002216591.1 198245772 complement(2788298..2789161) 1 NC_011205.1 identified by match to protein family HMM PF00037; polyferredoxin 2789161 439851002990 SeD_A2897 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 polyferredoxin YP_002216591.1 2788298 R 439851 CDS YP_002216592.1 198245146 complement(2789161..2789970) 1 NC_011205.1 anaerobic reductase component 2789970 439851002991 SeD_A2898 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anaerobic reductase component YP_002216592.1 2789161 R 439851 CDS YP_002216593.1 198244744 complement(2789963..2790592) 1 NC_011205.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase, chain B 2790592 dmsB 439851002992 dmsB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dimethylsulfoxide reductase, chain B YP_002216593.1 2789963 R 439851 CDS YP_002216594.1 198244171 complement(2790589..2792967) 1 NC_011205.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase chain a 2792967 439851002993 SeD_A2900 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anaerobic dimethyl sulfoxide reductase chain a YP_002216594.1 2790589 R 439851 CDS YP_002216595.1 198243903 complement(2793123..2795438) 1 NC_011205.1 penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C 2795438 pbpC 439851002994 pbpC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 penicillin-binding protein 1C YP_002216595.1 2793123 R 439851 CDS YP_002216596.1 198245272 2800582..2801424 1 NC_011205.1 catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase 2801424 sseA 439851002997 sseA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-mercaptopyruvate sulfurtransferase YP_002216596.1 2800582 D 439851 CDS YP_002216597.1 198242281 complement(2801404..2801628) 1 NC_011205.1 identified by glimmer; hypothetical protein 2801628 439851002998 SeD_A2905 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216597.1 2801404 R 439851 CDS YP_002216598.1 198245492 2801670..2802338 1 NC_011205.1 hypothetical protein 2802338 439851002999 SeD_A2906 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216598.1 2801670 D 439851 CDS YP_002216599.1 198243142 complement(2802393..2802521) 1 NC_011205.1 identified by glimmer; hypothetical protein 2802521 439851003000 SeD_A2907 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216599.1 2802393 R 439851 CDS YP_002216600.1 198242368 complement(2802907..2803653) 1 NC_011205.1 enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB 2803653 sseB 439851003002 sseB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 enhanced serine sensitivity protein SseB YP_002216600.1 2802907 R 439851 CDS YP_002216601.1 198245991 complement(2803793..2805076) 1 NC_011205.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase 2805076 439851003003 SeD_A2910 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aminopeptidase YP_002216601.1 2803793 R 439851 CDS YP_002216602.1 198245861 complement(2805254..2805454) 1 NC_011205.1 identified by match to protein family HMM PF04384; hypothetical protein 2805454 iscX 439851003004 iscX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216602.1 2805254 R 439851 CDS YP_002216603.1 198245674 complement(2805466..2805801) 1 NC_011205.1 2Fe-2S type, ISC system; identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007; ferredoxin 2805801 fdx 439851003005 fdx Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ferredoxin YP_002216603.1 2805466 R 439851 CDS YP_002216604.1 198244862 complement(2805803..2807653) 1 NC_011205.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 2807653 hscA 439851003006 hscA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chaperone protein HscA YP_002216604.1 2805803 R 439851 CDS YP_002216605.1 198244143 complement(2807666..2808181) 1 NC_011205.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 2808181 hscB 439851003007 hscB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 co-chaperone HscB YP_002216605.1 2807666 R 439851 CDS YP_002216606.1 198243888 complement(2808377..2808700) 1 NC_011205.1 forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; iron-sulfur cluster assembly protein 2808700 iscA 439851003008 iscA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 iron-sulfur cluster assembly protein YP_002216606.1 2808377 R 439851 CDS YP_002216607.1 198243739 complement(2808729..2809115) 1 NC_011205.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999; scaffold protein 2809115 iscU 439851003009 iscU Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 scaffold protein YP_002216607.1 2808729 R 439851 CDS YP_002216608.1 198242198 complement(2809143..2810357) 1 NC_011205.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 2810357 iscS 439851003010 iscS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cysteine desulfurase YP_002216608.1 2809143 R 439851 CDS YP_002216609.1 198243832 2810410..2810529 1 NC_011205.1 identified by glimmer; hypothetical protein 2810529 439851003011 SeD_A2918 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216609.1 2810410 D 439851 CDS YP_002216610.1 198243196 complement(2810538..2811032) 1 NC_011205.1 regulates the expression of the iscRSUA operon; DNA-binding transcriptional regulator IscR 2811032 iscR 439851003012 iscR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator IscR YP_002216610.1 2810538 R 439851 CDS YP_002216611.1 198242671 complement(2811192..2811923) 1 NC_011205.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050; RNA methyltransferase 2811923 439851003013 SeD_A2920 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RNA methyltransferase YP_002216611.1 2811192 R 439851 CDS YP_002216612.1 198242283 2812042..2812845 1 NC_011205.1 identified by match to protein family HMM PF00459; inositol monophosphatase 2812845 suhB 439851003014 suhB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inositol monophosphatase YP_002216612.1 2812042 D 439851 CDS YP_002216613.1 198242294 2812990..2813802 1 NC_011205.1 hypothetical protein 2813802 439851003015 SeD_A2922 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216613.1 2812990 D 439851 CDS YP_002216614.1 198245727 2813984..2815027 1 NC_011205.1 identified by match to protein family HMM TIGR02910; sulfite reductase subunit A 2815027 asrA 439851003016 asrA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfite reductase subunit A YP_002216614.1 2813984 D 439851 CDS YP_002216615.1 198245226 2815031..2815849 1 NC_011205.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 2815849 asrB 439851003017 asrB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anaerobic sulfite reductase subunit B YP_002216615.1 2815031 D 439851 CDS YP_002216616.1 198244708 2815860..2816873 1 NC_011205.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912; sulfite reductase subunit C 2816873 asrC 439851003018 asrC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfite reductase subunit C YP_002216616.1 2815860 D 439851 CDS YP_002216617.1 198244713 complement(2816874..2817860) 1 NC_011205.1 identified by match to protein family HMM PF03824; high-affinity nickel-transporter 2817860 439851003019 SeD_A2926 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 high-affinity nickel-transporter YP_002216617.1 2816874 R 439851 CDS YP_002216618.1 198245288 complement(2817851..2818519) 1 NC_011205.1 identified by match to protein family HMM PF06226; hypothetical protein 2818519 439851003020 SeD_A2927 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216618.1 2817851 R 439851 CDS YP_002216619.1 198243019 2818615..2819892 1 NC_011205.1 identified by match to protein family HMM PF00874; stationary phase inducible protein CsiE 2819892 439851003021 SeD_A2928 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 stationary phase inducible protein CsiE YP_002216619.1 2818615 D 439851 CDS YP_002216620.1 198242790 complement(2819887..2821026) 1 NC_011205.1 transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; 3-phenylpropionic acid transporter 2821026 439851003022 SeD_A2929 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-phenylpropionic acid transporter YP_002216620.1 2819887 R 439851 CDS YP_002216621.1 198245708 complement(2821222..2822475) 1 NC_011205.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 2822475 glyA 439851003023 glyA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 serine hydroxymethyltransferase YP_002216621.1 2821222 R 439851 CDS YP_002216622.1 198242005 complement(2822613..2822759) 1 NC_011205.1 hypothetical protein 2822759 439851003024 SeD_A2931 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216622.1 2822613 R 439851 CDS YP_002216623.1 198244275 2822800..2823990 1 NC_011205.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 2823990 hmp 439851003025 hmp Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitric oxide dioxygenase YP_002216623.1 2822800 D 439851 CDS YP_002216624.1 198244732 2824172..2825716 1 NC_011205.1 regulates the cadBA operon; DNA-binding transcriptional activator CadC 2825716 439851003026 SeD_A2933 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional activator CadC YP_002216624.1 2824172 D 439851 CDS YP_002216625.1 198243915 2826077..2827408 1 NC_011205.1 antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; lysine/cadaverine antiporter 2827408 cadB 439851003027 cadB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lysine/cadaverine antiporter YP_002216625.1 2826077 D 439851 CDS YP_002216626.1 198244538 2827491..2829635 1 NC_011205.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; lysine decarboxylase, constitutive 2829635 439851003028 SeD_A2935 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lysine decarboxylase, constitutive YP_002216626.1 2827491 D 439851 CDS YP_002216627.1 198243405 2829691..2831151 1 NC_011205.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; inner membrane transporter YbgH 2831151 439851003029 SeD_A2936 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane transporter YbgH YP_002216627.1 2829691 D 439851 CDS YP_002216628.1 198242807 complement(2831200..2831538) 1 NC_011205.1 indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; nitrogen regulatory protein P-II 1 2831538 439851003030 SeD_A2937 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitrogen regulatory protein P-II 1 YP_002216628.1 2831200 R 439851 CDS YP_002216629.1 198243605 complement(2831615..2832952) 1 NC_011205.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF07728; transcriptional regulator ZraR 2832952 439851003031 SeD_A2938 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator ZraR YP_002216629.1 2831615 R 439851 CDS YP_002216630.1 198243834 complement(2832949..2833635) 1 NC_011205.1 hypothetical protein 2833635 439851003032 SeD_A2939 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216630.1 2832949 R 439851 CDS YP_002216631.1 198242793 2835408..2835536 1 NC_011205.1 identified by glimmer; hypothetical protein 2835536 439851003035 SeD_A2942 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216631.1 2835408 D 439851 CDS YP_002216632.1 198246124 complement(2835795..2839682) 1 NC_011205.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 2839682 purL 439851003036 purL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoribosylformylglycinamidine synthase YP_002216632.1 2835795 R 439851 CDS YP_002216633.1 198241820 2839796..2839933 1 NC_011205.1 hypothetical protein 2839933 439851003037 SeD_A2944 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216633.1 2839796 D 439851 CDS YP_002216634.1 198244635 2839938..2841482 1 NC_011205.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; transglycosylase 2841482 439851003038 SeD_A2945 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transglycosylase YP_002216634.1 2839938 D 439851 CDS YP_002216635.1 198245375 complement(2841533..2842051) 1 NC_011205.1 identified by match to protein family HMM PF00383; tRNA-specific adenosine deaminase 2842051 439851003039 SeD_A2946 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA-specific adenosine deaminase YP_002216635.1 2841533 R 439851 CDS YP_002216636.1 198243826 complement(2842109..2842744) 1 NC_011205.1 identified by match to protein family HMM TIGR01545; hypothetical protein 2842744 yfhB 439851003040 yfhB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216636.1 2842109 R 439851 CDS YP_002216637.1 198243355 complement(2842748..2844109) 1 NC_011205.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; PTS system transporter subunit EIIC 2844109 439851003041 SeD_A2948 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system transporter subunit EIIC YP_002216637.1 2842748 R 439851 CDS YP_002216638.1 198242665 complement(2844120..2845013) 1 NC_011205.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase 2845013 murQ 439851003042 murQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N-acetylmuramic acid-6-phosphate etherase YP_002216638.1 2844120 R 439851 CDS YP_002216639.1 198242293 2845129..2845977 1 NC_011205.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; DNA-binding transcriptional regulator 2845977 439851003043 SeD_A2950 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator YP_002216639.1 2845129 D 439851 CDS YP_002216640.1 198245902 complement(2846016..2846933) 1 NC_011205.1 identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745; 2-dehydropantoate 2-reductase 2846933 panE 439851003044 panE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-dehydropantoate 2-reductase YP_002216640.1 2846016 R 439851 CDS YP_002216641.1 198245286 complement(2846955..2848151) 1 NC_011205.1 identified by match to protein family HMM PF07690; major facilitator family transporter 2848151 439851003045 SeD_A2952 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 major facilitator family transporter YP_002216641.1 2846955 R 439851 CDS YP_002216642.1 198244987 2848267..2849193 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator 2849193 439851003046 SeD_A2953 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002216642.1 2848267 D 439851 CDS YP_002216643.1 198244497 2849231..2849491 1 NC_011205.1 identified by match to protein family HMM PF00037; ferredoxin 2849491 439851003047 SeD_A2954 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ferredoxin YP_002216643.1 2849231 D 439851 CDS YP_002216644.1 198241762 complement(2849603..2849983) 1 NC_011205.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 2849983 acpS 439851003048 acpS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4'-phosphopantetheinyl transferase YP_002216644.1 2849603 R 439851 CDS YP_002216645.1 198243503 complement(2849983..2850714) 1 NC_011205.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 2850714 pdxJ 439851003049 pdxJ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pyridoxine 5'-phosphate synthase YP_002216645.1 2849983 R 439851 CDS YP_002216646.1 198245563 complement(2850726..2851454) 1 NC_011205.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 2851454 recO 439851003050 recO Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA repair protein RecO YP_002216646.1 2850726 R 439851 CDS YP_002216647.1 198242030 complement(2851466..2852371) 1 NC_011205.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 2852371 era 439851003051 era Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GTP-binding protein Era YP_002216647.1 2851466 R 439851 CDS YP_002216648.1 198245284 complement(2852368..2853105) 1 NC_011205.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 2853105 rnc 439851003052 rnc Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonuclease III YP_002216648.1 2852368 R 439851 CDS YP_002216649.1 198245898 complement(2853322..2854296) 1 NC_011205.1 catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I 2854296 lepB 439851003053 lepB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 signal peptidase I YP_002216649.1 2853322 R 439851 CDS YP_002216650.1 198246227 complement(2854313..2856112) 1 NC_011205.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 2856112 lepA 439851003054 lepA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GTP-binding protein LepA YP_002216650.1 2854313 R 439851 CDS YP_002216651.1 198244681 complement(2856364..2856843) 1 NC_011205.1 involved in the reduction of the SoxR iron-sulfur cluster; SoxR reducing system protein RseC 2856843 439851003055 SeD_A2963 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 SoxR reducing system protein RseC YP_002216651.1 2856364 R 439851 CDS YP_002216652.1 198245866 complement(2856840..2857796) 1 NC_011205.1 periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE 2857796 rseB 439851003056 rseB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 periplasmic negative regulator of sigmaE YP_002216652.1 2856840 R 439851 CDS YP_002216653.1 198245360 complement(2857796..2858446) 1 NC_011205.1 identified by match to protein family HMM PF03872; match to protein family HMM PF03873; anti-RNA polymerase sigma factor SigE 2858446 rseA 439851003057 rseA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anti-RNA polymerase sigma factor SigE YP_002216653.1 2857796 R 439851 CDS YP_002216654.1 198244605 complement(2858478..2859053) 1 NC_011205.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 2859053 rpoE 439851003058 rpoE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RNA polymerase sigma factor RpoE YP_002216654.1 2858478 R 439851 CDS YP_002216655.1 198244116 complement(2859214..2859393) 1 NC_011205.1 identified by glimmer; hypothetical protein 2859393 439851003059 SeD_A2967 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216655.1 2859214 R 439851 CDS YP_002216656.1 198242474 2859478..2861100 1 NC_011205.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2861100 nadB 439851003060 nadB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-aspartate oxidase YP_002216656.1 2859478 D 439851 CDS YP_002216657.1 198245495 2861757..2861876 1 NC_011205.1 identified by glimmer; hypothetical protein 2861876 439851003062 SeD_A2970 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216657.1 2861757 D 439851 CDS YP_002216658.1 198245924 2861952..2863286 1 NC_011205.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 2863286 439851003063 SeD_A2971 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent RNA helicase SrmB YP_002216658.1 2861952 D 439851 CDS YP_002216659.1 198244545 complement(2863304..2864203) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 2864203 439851003064 SeD_A2972 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR substrate binding domain-containing protein YP_002216659.1 2863304 R 439851 CDS YP_002216660.1 198245047 2864306..2864893 1 NC_011205.1 identified by match to protein family HMM PF01810; neutral amino-acid efflux protein 2864893 439851003065 SeD_A2973 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 neutral amino-acid efflux protein YP_002216660.1 2864306 D 439851 CDS YP_002216661.1 198244654 complement(2864955..2865338) 1 NC_011205.1 stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA 2865338 grcA 439851003066 grcA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 autonomous glycyl radical cofactor GrcA YP_002216661.1 2864955 R 439851 CDS YP_002216662.1 198242907 2865657..2866346 1 NC_011205.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 2866346 ung 439851003067 ung Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 uracil-DNA glycosylase YP_002216662.1 2865657 D 439851 CDS YP_002216663.1 198243831 complement(2866462..2867499) 1 NC_011205.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; methyltransferase 2867499 439851003068 SeD_A2976 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methyltransferase YP_002216663.1 2866462 R 439851 CDS YP_002216664.1 198242015 2867703..2868122 1 NC_011205.1 identified by match to protein family HMM PF00085; match to protein family HMM PF08534; match to protein family HMM TIGR01068; thioredoxin 2 2868122 439851003069 SeD_A2977 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thioredoxin 2 YP_002216664.1 2867703 D 439851 CDS YP_002216665.1 198242843 2868195..2868875 1 NC_011205.1 identified by match to protein family HMM PF03942; hypothetical protein 2868875 439851003070 SeD_A2978 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216665.1 2868195 D 439851 CDS YP_002216666.1 198241823 2868929..2871589 1 NC_011205.1 identified by match to protein family HMM PF00583; match to protein family HMM PF02629; CoA-binding domain/acetyltransferase domain-containing protein 2871589 439851003071 SeD_A2979 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 CoA-binding domain/acetyltransferase domain-containing protein YP_002216666.1 2868929 D 439851 CDS YP_002216667.1 198245622 2871704..2873059 1 NC_011205.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2873059 pssA 439851003072 pssA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphatidylserine synthase YP_002216667.1 2871704 D 439851 CDS YP_002216668.1 198243353 2873104..2873427 1 NC_011205.1 hypothetical protein 2873427 439851003073 SeD_A2981 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216668.1 2873104 D 439851 CDS YP_002216669.1 198245140 complement(2873424..2874725) 1 NC_011205.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; alpha-ketoglutarate transporter 2874725 439851003074 SeD_A2982 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 alpha-ketoglutarate transporter YP_002216669.1 2873424 R 439851 CDS YP_002216670.1 198243840 complement(2874829..2875284) 1 NC_011205.1 hypothetical protein 2875284 439851003075 SeD_A2983 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216670.1 2874829 R 439851 CDS YP_002216671.1 198243260 complement(2881064..2883637) 1 NC_011205.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; protein disaggregation chaperone 2883637 clpB 439851003080 clpB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 protein disaggregation chaperone YP_002216671.1 2881064 R 439851 CDS YP_002216672.1 198242740 complement(2883767..2884498) 1 NC_011205.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein 2884498 439851003081 SeD_A2990 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216672.1 2883767 R 439851 CDS YP_002216673.1 198242257 complement(2884495..2885475) 1 NC_011205.1 responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D 2885475 rluD 439851003082 rluD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 23S rRNA pseudouridine synthase D YP_002216673.1 2884495 R 439851 CDS YP_002216674.1 198241761 2885607..2886344 1 NC_011205.1 with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline; outer membrane protein assembly complex subunit YfiO 2886344 439851003083 SeD_A2992 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein assembly complex subunit YfiO YP_002216674.1 2885607 D 439851 CDS YP_002216675.1 198243214 2886616..2886954 1 NC_011205.1 associated with 30S ribosomal subunit; interferes with translation elongation; translation inhibitor protein RaiA 2886954 439851003084 SeD_A2993 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 translation inhibitor protein RaiA YP_002216675.1 2886616 D 439851 CDS YP_002216676.1 198242157 2887205..2888365 1 NC_011205.1 catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; bifunctional chorismate mutase/prephenate dehydratase 2888365 pheA 439851003085 pheA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional chorismate mutase/prephenate dehydratase YP_002216676.1 2887205 D 439851 CDS YP_002216677.1 198242725 complement(2888326..2889234) 1 NC_011205.1 identified by match to protein family HMM PF08450; SMP-30/Gluconolaconase/LRE domain-containing protein 2889234 439851003086 SeD_A2995 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 SMP-30/Gluconolaconase/LRE domain-containing protein YP_002216677.1 2888326 R 439851 CDS YP_002216678.1 198246229 complement(2889292..2890413) 1 NC_011205.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 2890413 tyrA 439851003087 tyrA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional chorismate mutase/prephenate dehydrogenase YP_002216678.1 2889292 R 439851 CDS YP_002216679.1 198245145 complement(2890423..2891493) 1 NC_011205.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 2891493 aroF 439851003088 aroF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phospho-2-dehydro-3-deoxyheptonate aldolase YP_002216679.1 2890423 R 439851 CDS YP_002216680.1 198244743 complement(2891668..2891781) 1 NC_011205.1 identified by glimmer; hypothetical protein 2891781 439851003089 SeD_A2998 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216680.1 2891668 R 439851 CDS YP_002216681.1 198244298 2891933..2892451 1 NC_011205.1 hypothetical protein 2892451 439851003090 SeD_A2999 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216681.1 2891933 D 439851 CDS YP_002216682.1 198243597 2892525..2893664 1 NC_011205.1 identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254; hypothetical protein 2893664 439851003091 SeD_A3000 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216682.1 2892525 D 439851 CDS YP_002216683.1 198243231 complement(2893822..2894169) 1 NC_011205.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 2894169 rplS 439851003092 rplS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L19 YP_002216683.1 2893822 R 439851 CDS YP_002216684.1 198242857 complement(2894210..2894977) 1 NC_011205.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 2894977 trmD 439851003093 trmD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA (guanine-N(1)-)-methyltransferase YP_002216684.1 2894210 R 439851 CDS YP_002216685.1 198245720 complement(2895022..2895573) 1 NC_011205.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 2895573 rimM 439851003094 rimM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 16S rRNA-processing protein RimM YP_002216685.1 2895022 R 439851 CDS YP_002216686.1 198243868 complement(2895589..2895837) 1 NC_011205.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 2895837 rpsP 439851003095 rpsP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S16 YP_002216686.1 2895589 R 439851 CDS YP_002216687.1 198243111 complement(2896090..2897451) 1 NC_011205.1 with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 2897451 ffh 439851003096 ffh Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 signal recognition particle protein YP_002216687.1 2896090 R 439851 CDS YP_002216688.1 198244356 2898473..2899714 1 NC_011205.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hypothetical protein 2899714 439851003098 SeD_A3007 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216688.1 2898473 D 439851 CDS YP_002216689.1 198242260 2899799..2900440 1 NC_011205.1 hypothetical protein 2900440 439851003099 SeD_A3008 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216689.1 2899799 D 439851 CDS YP_002216690.1 198246197 complement(2900475..2901227) 1 NC_011205.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 2901227 grpE 439851003100 grpE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 heat shock protein GrpE YP_002216690.1 2900475 R 439851 CDS YP_002216691.1 198242339 2901189..2902067 1 NC_011205.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2902067 ppnK 439851003101 ppnK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inorganic polyphosphate/ATP-NAD kinase YP_002216691.1 2901189 D 439851 CDS YP_002216692.1 198241855 2902153..2903814 1 NC_011205.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; recombination and repair protein 2903814 recN 439851003102 recN Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 recombination and repair protein YP_002216692.1 2902153 D 439851 CDS YP_002216693.1 198244135 2903963..2904301 1 NC_011205.1 identified by match to protein family HMM PF04355; hypothetical protein 2904301 439851003103 SeD_A3012 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216693.1 2903963 D 439851 CDS YP_002216694.1 198244364 complement(2904467..2904757) 1 NC_011205.1 identified by match to protein family HMM PF03658; hypothetical protein 2904757 439851003104 SeD_A3013 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216694.1 2904467 R 439851 CDS YP_002216695.1 198245141 complement(2904747..2905223) 1 NC_011205.1 identified by match to protein family HMM PF03364; hypothetical protein 2905223 439851003105 SeD_A3014 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216695.1 2904747 R 439851 CDS YP_002216696.1 198245783 2905328..2905855 1 NC_011205.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2905855 smpB 439851003106 smpB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 SsrA-binding protein YP_002216696.1 2905328 D 439851 CDS YP_002216697.1 198242755 complement(2906002..2906154) 1 NC_011205.1 identified by glimmer; hypothetical protein 2906154 439851003107 SeD_A3016 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216697.1 2906002 R 439851 CDS YP_002216698.1 198242247 2906470..2917689 1 NC_011205.1 identified by match to protein family HMM TIGR01965; VCBS repeat-containing protein 2917689 439851003108 SeD_A3017 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 VCBS repeat-containing protein YP_002216698.1 2906470 D 439851 CDS YP_002216699.1 198243811 2917754..2919163 1 NC_011205.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844; type I secretion outer membrane protein, TolC family 2919163 439851003109 SeD_A3018 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type I secretion outer membrane protein, TolC family YP_002216699.1 2917754 D 439851 CDS YP_002216700.1 198245008 2921316..2922506 1 NC_011205.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843; type I secretion membrane fusion protein, HlyD family 2922506 439851003112 SeD_A3021 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type I secretion membrane fusion protein, HlyD family YP_002216700.1 2921316 D 439851 CDS YP_002216701.1 198241908 2922988..2923131 1 NC_011205.1 identified by glimmer; hypothetical protein 2923131 439851003114 SeD_A3024 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216701.1 2922988 D 439851 CDS YP_002216702.1 198244478 complement(2923345..2924445) 1 NC_011205.1 identified by match to protein family HMM PF05954; phage late control D family protein 2924445 439851003115 SeD_A3025 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage late control D family protein YP_002216702.1 2923345 R 439851 CDS YP_002216703.1 198243853 complement(2924442..2924927) 1 NC_011205.1 identified by match to protein family HMM PF06995; phage P2 GpU family protein 2924927 439851003116 SeD_A3026 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage P2 GpU family protein YP_002216703.1 2924442 R 439851 CDS YP_002216704.1 198244813 complement(2924924..2927731) 1 NC_011205.1 identified by match to protein family HMM TIGR01760; phage tail tape measure protein 2927731 439851003117 SeD_A3027 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage tail tape measure protein YP_002216704.1 2924924 R 439851 CDS YP_002216705.1 198241902 complement(2927858..2928160) 1 NC_011205.1 identified by match to protein family HMM PF06158; phage tail protein E 2928160 439851003119 SeD_A3029 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage tail protein E YP_002216705.1 2927858 R 439851 CDS YP_002216706.1 198245888 complement(2928215..2928730) 1 NC_011205.1 identified by match to protein family HMM PF04985; match to protein family HMM TIGR01611; phage major tail tube protein FII 2928730 439851003120 SeD_A3030 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage major tail tube protein FII YP_002216706.1 2928215 R 439851 CDS YP_002216707.1 198243423 complement(2928740..2929912) 1 NC_011205.1 identified by match to protein family HMM PF04984; major tail sheath protein 2929912 439851003121 SeD_A3031 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 major tail sheath protein YP_002216707.1 2928740 R 439851 CDS YP_002216708.1 198242828 complement(2930043..2930570) 1 NC_011205.1 identified by match to protein family HMM PF02413; phage tail fiber assembly protein 2930570 439851003122 SeD_A3032 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage tail fiber assembly protein YP_002216708.1 2930043 R 439851 CDS YP_002216709.1 198243132 complement(2930573..2932258) 1 NC_011205.1 tail fiber domain-containing protein 2932258 439851003123 SeD_A3033 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tail fiber domain-containing protein YP_002216709.1 2930573 R 439851 CDS YP_002216710.1 198243193 complement(2932255..2932860) 1 NC_011205.1 identified by match to protein family HMM TIGR01634; phage tail protein I 2932860 439851003124 SeD_A3034 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage tail protein I YP_002216710.1 2932255 R 439851 CDS YP_002216711.1 198242076 complement(2932853..2933761) 1 NC_011205.1 identified by match to protein family HMM PF04865; baseplate assembly protein J 2933761 439851003125 SeD_A3035 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 baseplate assembly protein J YP_002216711.1 2932853 R 439851 CDS YP_002216712.1 198242870 complement(2933748..2934107) 1 NC_011205.1 identified by match to protein family HMM PF04965; baseplate assembly protein W 2934107 439851003126 SeD_A3036 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 baseplate assembly protein W YP_002216712.1 2933748 R 439851 CDS YP_002216713.1 198243361 complement(2934104..2934682) 1 NC_011205.1 identified by match to protein family HMM PF04717; match to protein family HMM TIGR01644; phage baseplate assembly protein V 2934682 439851003127 SeD_A3037 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage baseplate assembly protein V YP_002216713.1 2934104 R 439851 CDS YP_002216714.1 198242975 2934778..2935644 1 NC_011205.1 identified by glimmer; hypothetical protein 2935644 439851003128 SeD_A3038 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216714.1 2934778 D 439851 CDS YP_002216715.1 198245796 complement(2935671..2936117) 1 NC_011205.1 identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635; phage virion morphogenesis protein 2936117 439851003129 SeD_A3039 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage virion morphogenesis protein YP_002216715.1 2935671 R 439851 CDS YP_002216716.1 198245018 complement(2936110..2936541) 1 NC_011205.1 identified by match to protein family HMM PF06891; phage tail completion protein R 2936541 gpR 439851003130 gpR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage tail completion protein R YP_002216716.1 2936110 R 439851 CDS YP_002216717.1 198245419 complement(2936637..2937065) 1 NC_011205.1 phage lysis timing protein LysB 2937065 439851003131 SeD_A3041 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage lysis timing protein LysB YP_002216717.1 2936637 R 439851 CDS YP_002216718.1 198246063 complement(2937062..2937439) 1 NC_011205.1 hypothetical protein 2937439 439851003132 SeD_A3042 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216718.1 2937062 R 439851 CDS YP_002216719.1 198241915 complement(2937441..2937953) 1 NC_011205.1 identified by match to protein family HMM PF00959; phage lysozyme 2937953 439851003133 SeD_A3043 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage lysozyme YP_002216719.1 2937441 R 439851 CDS YP_002216720.1 198242396 complement(2937934..2938149) 1 NC_011205.1 holin family protein 2938149 439851003134 SeD_A3044 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 holin family protein YP_002216720.1 2937934 R 439851 CDS YP_002216721.1 198243039 complement(2938153..2938356) 1 NC_011205.1 identified by match to protein family HMM PF05489; phage Tail Protein X 2938356 439851003135 SeD_A3045 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage Tail Protein X YP_002216721.1 2938153 R 439851 CDS YP_002216722.1 198243275 complement(2938356..2938820) 1 NC_011205.1 identified by match to protein family HMM PF05926; phage head completion protein 2938820 439851003136 SeD_A3046 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage head completion protein YP_002216722.1 2938356 R 439851 CDS YP_002216723.1 198244020 complement(2938916..2939566) 1 NC_011205.1 identified by match to protein family HMM PF05944; terminase, endonuclease subunit 2939566 439851003137 SeD_A3047 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 terminase, endonuclease subunit YP_002216723.1 2938916 R 439851 CDS YP_002216724.1 198245755 complement(2939570..2940628) 1 NC_011205.1 identified by match to protein family HMM PF05125; match to protein family HMM TIGR01551; phage major capsid protein, P2 family 2940628 439851003138 SeD_A3048 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage major capsid protein, P2 family YP_002216724.1 2939570 R 439851 CDS YP_002216725.1 198244230 complement(2940645..2941478) 1 NC_011205.1 identified by match to protein family HMM PF05929; phage capsid scaffolding protein 2941478 439851003139 SeD_A3049 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage capsid scaffolding protein YP_002216725.1 2940645 R 439851 CDS YP_002216726.1 198245759 2941621..2943387 1 NC_011205.1 identified by match to protein family HMM PF03237; match to protein family HMM PF06056; terminase, ATPase subunit 2943387 439851003140 SeD_A3050 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 terminase, ATPase subunit YP_002216726.1 2941621 D 439851 CDS YP_002216727.1 198242747 2943387..2944418 1 NC_011205.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540; phage portal protein, pbsx family 2944418 439851003141 SeD_A3051 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage portal protein, pbsx family YP_002216727.1 2943387 D 439851 CDS YP_002216728.1 198245196 complement(2944415..2945194) 1 NC_011205.1 identified by glimmer; hypothetical protein 2945194 439851003142 SeD_A3052 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216728.1 2944415 R 439851 CDS YP_002216729.1 198242255 complement(2945199..2946359) 1 NC_011205.1 identified by match to protein family HMM PF03235; hypothetical protein 2946359 439851003143 SeD_A3053 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216729.1 2945199 R 439851 CDS YP_002216730.1 198243750 2946780..2947658 1 NC_011205.1 lipoprotein 2947658 439851003144 SeD_A3054 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein YP_002216730.1 2946780 D 439851 CDS YP_002216731.1 198241933 complement(2947796..2947915) 1 NC_011205.1 identified by glimmer; hypothetical protein 2947915 439851003145 SeD_A3055 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216731.1 2947796 R 439851 CDS YP_002216732.1 198243837 complement(2948137..2948325) 1 NC_011205.1 hypothetical protein 2948325 439851003146 SeD_A3056 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216732.1 2948137 R 439851 CDS YP_002216733.1 198245528 complement(2948481..2950877) 1 NC_011205.1 identified by match to protein family HMM PF05840; bacteriophage replication gene A 2950877 439851003147 SeD_A3057 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bacteriophage replication gene A YP_002216733.1 2948481 R 439851 CDS YP_002216734.1 198242501 complement(2950874..2951731) 1 NC_011205.1 identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571; retron adenine methylase 2951731 439851003148 SeD_A3058 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 retron adenine methylase YP_002216734.1 2950874 R 439851 CDS YP_002216735.1 198243090 complement(2951728..2951955) 1 NC_011205.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02419; DksA/TraR family protein 2951955 439851003149 SeD_A3059 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DksA/TraR family protein YP_002216735.1 2951728 R 439851 CDS YP_002216736.1 198244979 complement(2951955..2952188) 1 NC_011205.1 hypothetical protein 2952188 439851003150 SeD_A3060 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216736.1 2951955 R 439851 CDS YP_002216737.1 198244028 complement(2952256..2952597) 1 NC_011205.1 hypothetical protein 2952597 439851003151 SeD_A3061 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216737.1 2952256 R 439851 CDS YP_002216738.1 198245908 2952910..2953275 1 NC_011205.1 hypothetical protein 2953275 439851003152 SeD_A3062 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216738.1 2952910 D 439851 CDS YP_002216739.1 198242399 complement(2954010..2954249) 1 NC_011205.1 phage regulatory protein 2954249 439851003154 SeD_A3064 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage regulatory protein YP_002216739.1 2954010 R 439851 CDS YP_002216740.1 198242560 2954594..2954998 1 NC_011205.1 phage repressor protein cI 2954998 439851003155 SeD_A3065 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage repressor protein cI YP_002216740.1 2954594 D 439851 CDS YP_002216741.1 198243118 2955002..2956027 1 NC_011205.1 identified by match to protein family HMM PF00589; phage integrase 2956027 439851003156 SeD_A3066 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage integrase YP_002216741.1 2955002 D 439851 CDS YP_002216742.1 198244600 2957279..2958082 1 NC_011205.1 hypothetical protein 2958082 439851003157 SeD_A3067 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216742.1 2957279 D 439851 CDS YP_002216743.1 198241923 complement(2958878..2959501) 1 NC_011205.1 identified by match to protein family HMM PF00665; transposase B 2959501 439851003158 SeD_A3068 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transposase B YP_002216743.1 2958878 R 439851 CDS YP_002216744.1 198243844 complement(2959723..2959989) 1 NC_011205.1 identified by match to protein family HMM PF01527; transposase family protein 2959989 439851003159 SeD_A3069 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transposase family protein YP_002216744.1 2959723 R 439851 CDS YP_002216745.1 198245659 2960332..2960448 1 NC_011205.1 insertion sequence element transposase 2960448 439851003160 SeD_A3070 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 insertion sequence element transposase YP_002216745.1 2960332 D 439851 CDS YP_002216746.1 198242618 2961074..2962189 1 NC_011205.1 identified by match to protein family HMM PF06722; hypothetical protein 2962189 439851003161 SeD_A3071 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216746.1 2961074 D 439851 CDS YP_002216747.1 198245961 2962270..2965926 1 NC_011205.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ATP binding cassette 2965926 439851003162 SeD_A3072 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP binding cassette YP_002216747.1 2962270 D 439851 CDS YP_002216748.1 198245339 2966036..2967280 1 NC_011205.1 identified by match to protein family HMM PF00756; enterochelin esterase 2967280 439851003163 SeD_A3073 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 enterochelin esterase YP_002216748.1 2966036 D 439851 CDS YP_002216749.1 198243714 2967312..2968241 1 NC_011205.1 hypothetical protein 2968241 439851003164 SeD_A3074 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216749.1 2967312 D 439851 CDS YP_002216750.1 198245257 complement(2968283..2970457) 1 NC_011205.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 2970457 439851003165 SeD_A3075 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane receptor FepA YP_002216750.1 2968283 R 439851 CDS YP_002216751.1 198243391 complement(2971495..2972595) 1 NC_011205.1 identified by match to protein family HMM PF00805; effector protein pipB2 2972595 439851003167 SeD_A3077 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 effector protein pipB2 YP_002216751.1 2971495 R 439851 CDS YP_002216752.1 198246121 2973066..2973995 1 NC_011205.1 identified by match to protein family HMM PF04393; hypothetical protein 2973995 439851003168 SeD_A3078 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216752.1 2973066 D 439851 CDS YP_002216753.1 198245926 2974095..2974292 1 NC_011205.1 identified by glimmer; hypothetical protein 2974292 439851003169 SeD_A3079 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216753.1 2974095 D 439851 CDS YP_002216754.1 198244247 2974289..2975185 1 NC_011205.1 identified by match to protein family HMM PF07395; Mig-14 2975185 439851003170 SeD_A3080 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Mig-14 YP_002216754.1 2974289 D 439851 CDS YP_002216755.1 198244723 2975701..2975814 1 NC_011205.1 inner membrane protein 2975814 439851003171 SeD_A3081 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002216755.1 2975701 D 439851 CDS YP_002216756.1 198243274 complement(2975907..2976920) 1 NC_011205.1 identified by match to protein family HMM PF03824; match to protein family HMM TIGR00802; high-affinity nickel transport protein 2976920 hoxN 439851003172 hoxN Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 high-affinity nickel transport protein YP_002216756.1 2975907 R 439851 CDS YP_002216757.1 198244981 complement(2977053..2978468) 1 NC_011205.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08521; tricarboxylic transporter regulatory protein 2978468 439851003173 SeD_A3083 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tricarboxylic transporter regulatory protein YP_002216757.1 2977053 R 439851 CDS YP_002216758.1 198242096 complement(2978455..2979129) 1 NC_011205.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulator TctD 2979129 439851003174 SeD_A3084 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator TctD YP_002216758.1 2978455 R 439851 CDS YP_002216759.1 198244631 2979284..2980261 1 NC_011205.1 identified by match to protein family HMM PF03401; tricarboxylic transport 2980261 439851003175 SeD_A3085 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tricarboxylic transport YP_002216759.1 2979284 D 439851 CDS YP_002216760.1 198243114 2980276..2980707 1 NC_011205.1 tricarboxylic transport 2980707 439851003176 SeD_A3086 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tricarboxylic transport YP_002216760.1 2980276 D 439851 CDS YP_002216761.1 198243598 2980718..2982232 1 NC_011205.1 identified by match to protein family HMM PF01970; hypothetical protein 2982232 439851003177 SeD_A3087 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216761.1 2980718 D 439851 CDS YP_002216762.1 198243838 2982396..2982509 1 NC_011205.1 identified by glimmer; hypothetical protein 2982509 439851003178 SeD_A3088 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216762.1 2982396 D 439851 CDS YP_002216763.1 198245579 2983538..2984806 1 NC_011205.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 2984806 439851003180 SeD_A3091 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydroxyglutarate oxidase YP_002216763.1 2983538 D 439851 CDS YP_002216764.1 198245716 2984828..2986276 1 NC_011205.1 catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 2986276 gabD 439851003181 gabD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 succinate-semialdehyde dehydrogenase I YP_002216764.1 2984828 D 439851 CDS YP_002216765.1 198242613 2987672..2989072 1 NC_011205.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR01773; gamma-aminobutyrate transporter 2989072 gabP 439851003183 gabP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gamma-aminobutyrate transporter YP_002216765.1 2987672 D 439851 CDS YP_002216766.1 198242095 2989114..2989791 1 NC_011205.1 regulator of gab gene expression; DNA-binding transcriptional regulator CsiR 2989791 439851003184 SeD_A3096 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator CsiR YP_002216766.1 2989114 D 439851 CDS YP_002216767.1 198245884 complement(2989813..2990262) 1 NC_011205.1 identified by match to protein family HMM PF01476; match to protein family HMM PF04972; LysM domain/BON superfamily protein 2990262 439851003185 SeD_A3097 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysM domain/BON superfamily protein YP_002216767.1 2989813 R 439851 CDS YP_002216768.1 198245363 complement(2990362..2990520) 1 NC_011205.1 identified by match to protein family HMM PF01679; hypothetical protein 2990520 439851003186 SeD_A3098 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216768.1 2990362 R 439851 CDS YP_002216769.1 198244582 2990703..2991002 1 NC_011205.1 identified by match to protein family HMM PF01022; regulatory protein ArsR 2991002 439851003187 SeD_A3099 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 regulatory protein ArsR YP_002216769.1 2990703 D 439851 CDS YP_002216770.1 198244092 2991012..2991539 1 NC_011205.1 identified by match to protein family HMM PF00581; hypothetical protein 2991539 439851003188 SeD_A3100 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216770.1 2991012 D 439851 CDS YP_002216771.1 198245966 2991618..2991797 1 NC_011205.1 hypothetical protein 2991797 439851003189 SeD_A3101 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216771.1 2991618 D 439851 CDS YP_002216772.1 198245376 complement(2991887..2992288) 1 NC_011205.1 nucleoid-associated; identified by match to protein family HMM PF00816; DNA binding protein, nucleoid-associated 2992288 439851003190 SeD_A3102 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA binding protein, nucleoid-associated YP_002216772.1 2991887 R 439851 CDS YP_002216773.1 198244609 2992658..2992771 1 NC_011205.1 identified by glimmer; hypothetical protein 2992771 439851003191 SeD_A3103 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216773.1 2992658 D 439851 CDS YP_002216774.1 198244131 2992986..2993435 1 NC_011205.1 identified by match to protein family HMM PF06610; membrane protein 2993435 439851003192 SeD_A3104 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 membrane protein YP_002216774.1 2992986 D 439851 CDS YP_002216775.1 198244694 complement(2993470..2993820) 1 NC_011205.1 hypothetical protein 2993820 439851003193 SeD_A3105 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216775.1 2993470 R 439851 CDS YP_002216776.1 198244083 complement(2993804..2993920) 1 NC_011205.1 identified by glimmer; hypothetical protein 2993920 439851003194 SeD_A3106 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216776.1 2993804 R 439851 CDS YP_002216777.1 198243946 2993982..2994308 1 NC_011205.1 identified by match to protein family HMM PF05957; hypothetical protein 2994308 439851003195 SeD_A3107 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216777.1 2993982 D 439851 CDS YP_002216778.1 198243372 complement(2994392..2995726) 1 NC_011205.1 with aminotransferase domain; identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 2995726 439851003196 SeD_A3108 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GntR family transcriptional regulator YP_002216778.1 2994392 R 439851 CDS YP_002216779.1 198244156 2995812..2996246 1 NC_011205.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; alkylhydroperoxidase 2996246 439851003197 SeD_A3109 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 alkylhydroperoxidase YP_002216779.1 2995812 D 439851 CDS YP_002216780.1 198244804 2996261..2996419 1 NC_011205.1 hypothetical protein 2996419 439851003198 SeD_A3110 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216780.1 2996261 D 439851 CDS YP_002216781.1 198242912 2996518..2996763 1 NC_011205.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194; glutaredoxin-like protein 2996763 439851003199 SeD_A3111 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutaredoxin-like protein YP_002216781.1 2996518 D 439851 CDS YP_002216782.1 198243545 2996760..2997170 1 NC_011205.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 2997170 nrdI 439851003200 nrdI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonucleotide reductase stimulatory protein YP_002216782.1 2996760 D 439851 CDS YP_002216783.1 198245896 2997143..2999287 1 NC_011205.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2999287 439851003201 SeD_A3113 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonucleotide-diphosphate reductase subunit alpha YP_002216783.1 2997143 D 439851 CDS YP_002216784.1 198241755 2999298..3000257 1 NC_011205.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 3000257 nrdF 439851003202 nrdF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonucleotide-diphosphate reductase subunit beta YP_002216784.1 2999298 D 439851 CDS YP_002216785.1 198245385 3000612..3001814 1 NC_011205.1 with ProWX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter ATP-binding subunit 3001814 proV 439851003203 proV Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycine betaine transporter ATP-binding subunit YP_002216785.1 3000612 D 439851 CDS YP_002216786.1 198245962 3001807..3002871 1 NC_011205.1 with ProVX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter membrane protein 3002871 439851003204 SeD_A3116 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycine betaine transporter membrane protein YP_002216786.1 3001807 D 439851 CDS YP_002216787.1 198244108 3002941..3003936 1 NC_011205.1 with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit 3003936 proX 439851003205 proX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycine betaine transporter periplasmic subunit YP_002216787.1 3002941 D 439851 CDS YP_002216788.1 198245092 3004101..3005285 1 NC_011205.1 identified by match to protein family HMM PF07690; major facilitator family protein 3005285 439851003206 SeD_A3118 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 major facilitator family protein YP_002216788.1 3004101 D 439851 CDS YP_002216789.1 198245380 3005782..3006312 1 NC_011205.1 DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; transcriptional repressor MprA 3006312 mprA 439851003207 mprA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional repressor MprA YP_002216789.1 3005782 D 439851 CDS YP_002216790.1 198245967 3006439..3007611 1 NC_011205.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR00998; multidrug resistance protein A 3007611 emrA 439851003208 emrA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multidrug resistance protein A YP_002216790.1 3006439 D 439851 CDS YP_002216791.1 198243738 3007628..3009166 1 NC_011205.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; multidrug resistance protein B 3009166 emrB 439851003209 emrB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multidrug resistance protein B YP_002216791.1 3007628 D 439851 CDS YP_002216792.1 198243968 3010730..3010873 1 NC_011205.1 hypothetical protein 3010873 439851003211 SeD_A3124 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216792.1 3010730 D 439851 CDS YP_002216793.1 198243558 complement(3010931..3011446) 1 NC_011205.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 3011446 luxS 439851003212 luxS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 S-ribosylhomocysteinase YP_002216793.1 3010931 R 439851 CDS YP_002216794.1 198242769 complement(3011596..3013152) 1 NC_011205.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 3013152 gshA 439851003214 gshA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamate--cysteine ligase YP_002216794.1 3011596 R 439851 CDS YP_002216795.1 198244519 complement(3013229..3013654) 1 NC_011205.1 hypothetical protein 3013654 439851003215 SeD_A3128 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216795.1 3013229 R 439851 CDS YP_002216796.1 198243799 complement(3013651..3014217) 1 NC_011205.1 YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent; fructose-1-phosphatase 3014217 439851003216 SeD_A3129 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fructose-1-phosphatase YP_002216796.1 3013651 R 439851 CDS YP_002216797.1 198245461 complement(3015339..3015524) 1 NC_011205.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 3015524 csrA 439851003222 csrA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 carbon storage regulator YP_002216797.1 3015339 R 439851 CDS YP_002216798.1 198245112 complement(3015759..3018389) 1 NC_011205.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 3018389 alaS 439851003223 alaS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 alanyl-tRNA synthetase YP_002216798.1 3015759 R 439851 CDS YP_002216799.1 198242159 complement(3018625..3019125) 1 NC_011205.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 3019125 recX 439851003224 recX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 recombination regulator RecX YP_002216799.1 3018625 R 439851 CDS YP_002216800.1 198241828 complement(3019242..3020303) 1 NC_011205.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 3020303 recA 439851003225 recA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 recombinase A YP_002216800.1 3019242 R 439851 CDS YP_002216801.1 198242150 complement(3020388..3020885) 1 NC_011205.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence damage-inducible protein A 3020885 439851003226 SeD_A3139 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 competence damage-inducible protein A YP_002216801.1 3020388 R 439851 CDS YP_002216802.1 198242640 complement(3021364..3022443) 1 NC_011205.1 membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B 3022443 mltB 439851003227 mltB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 murein hydrolase B YP_002216802.1 3021364 R 439851 CDS YP_002216803.1 198243317 3022697..3023260 1 NC_011205.1 identified by match to protein family HMM PF03608; match to protein family HMM TIGR00821; PTS system glucitol/sorbitol transporter subunit IIC 3023260 439851003228 SeD_A3141 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system glucitol/sorbitol transporter subunit IIC YP_002216803.1 3022697 D 439851 CDS YP_002216804.1 198243747 3023257..3024228 1 NC_011205.1 identified by match to protein family HMM PF03612; match to protein family HMM PF07663; match to protein family HMM TIGR00825; PTS system glucitol/sorbitol-specific transporter subunit IIB 3024228 439851003229 SeD_A3142 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system glucitol/sorbitol-specific transporter subunit IIB YP_002216804.1 3023257 D 439851 CDS YP_002216805.1 198245999 3024240..3024602 1 NC_011205.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucitol/sorbitol-specific transporter subunit IIA 3024602 srlB 439851003230 srlB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system glucitol/sorbitol-specific transporter subunit IIA YP_002216805.1 3024240 D 439851 CDS YP_002216806.1 198244352 3024614..3025393 1 NC_011205.1 catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; sorbitol-6-phosphate dehydrogenase 3025393 srlD 439851003231 srlD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sorbitol-6-phosphate dehydrogenase YP_002216806.1 3024614 D 439851 CDS YP_002216807.1 198242402 3025470..3025829 1 NC_011205.1 regulator for glucitol utilization; DNA-binding transcriptional activator GutM 3025829 439851003232 SeD_A3145 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional activator GutM YP_002216807.1 3025470 D 439851 CDS YP_002216808.1 198245307 3026027..3026800 1 NC_011205.1 regulates genes involved in glucitol utilization; DNA-binding transcriptional repressor SrlR 3026800 srlR 439851003233 srlR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional repressor SrlR YP_002216808.1 3026027 D 439851 CDS YP_002216809.1 198244302 3026793..3027758 1 NC_011205.1 catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate; D-arabinose 5-phosphate isomerase 3027758 gutQ 439851003234 gutQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-arabinose 5-phosphate isomerase YP_002216809.1 3026793 D 439851 CDS YP_002216810.1 198245021 complement(3027755..3029275) 1 NC_011205.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcription regulator 3029275 439851003235 SeD_A3148 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anaerobic nitric oxide reductase transcription regulator YP_002216810.1 3027755 R 439851 CDS YP_002216811.1 198246238 3029461..3030900 1 NC_011205.1 detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 3030900 norV 439851003236 norV Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anaerobic nitric oxide reductase flavorubredoxin YP_002216811.1 3029461 D 439851 CDS YP_002216812.1 198245580 3030897..3032030 1 NC_011205.1 catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 3032030 439851003237 SeD_A3150 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitric oxide reductase YP_002216812.1 3030897 D 439851 CDS YP_002216813.1 198244103 complement(3032127..3034367) 1 NC_011205.1 identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF 3034367 hypF 439851003238 hypF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 [NiFe] hydrogenase maturation protein HypF YP_002216813.1 3032127 R 439851 CDS YP_002216814.1 198243613 complement(3034513..3035058) 1 NC_011205.1 involved in electron transport from formate to hydrogen; electron transport protein HydN 3035058 439851003239 SeD_A3152 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 electron transport protein HydN YP_002216814.1 3034513 R 439851 CDS YP_002216815.1 198245325 complement(3035027..3035161) 1 NC_011205.1 hypothetical protein 3035161 439851003240 SeD_A3153 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216815.1 3035027 R 439851 CDS YP_002216816.1 198244677 complement(3035259..3036068) 1 NC_011205.1 hypothetical protein 3036068 439851003241 SeD_A3154 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216816.1 3035259 R 439851 CDS YP_002216817.1 198243338 complement(3036095..3036565) 1 NC_011205.1 involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease 3036565 hycI 439851003242 hycI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase 3 maturation protease YP_002216817.1 3036095 R 439851 CDS YP_002216818.1 198242668 complement(3036558..3036968) 1 NC_011205.1 identified by match to protein family HMM PF07450; formate hydrogenlyase maturation protein 3036968 439851003243 SeD_A3156 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate hydrogenlyase maturation protein YP_002216818.1 3036558 R 439851 CDS YP_002216819.1 198244148 complement(3036965..3037732) 1 NC_011205.1 identified by match to protein family HMM PF01058; formate hydrogenlyase subunit G 3037732 hycG 439851003244 hycG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate hydrogenlyase subunit G YP_002216819.1 3036965 R 439851 CDS YP_002216820.1 198243506 complement(3037732..3038274) 1 NC_011205.1 electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate; formate hydrogenlyase complex iron-sulfur subunit 3038274 hycF 439851003245 hycF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate hydrogenlyase complex iron-sulfur subunit YP_002216820.1 3037732 R 439851 CDS YP_002216821.1 198245407 complement(3038284..3039993) 1 NC_011205.1 identified by match to protein family HMM PF00329; match to protein family HMM PF00346; formate hydrogenlyase subunit E 3039993 hycE 439851003246 hycE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate hydrogenlyase subunit E YP_002216821.1 3038284 R 439851 CDS YP_002216822.1 198244705 complement(3040011..3040934) 1 NC_011205.1 identified by match to protein family HMM PF00146; formate hydrogenlyase subunit D 3040934 hycD 439851003247 hycD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate hydrogenlyase subunit D YP_002216822.1 3040011 R 439851 CDS YP_002216823.1 198242707 complement(3040937..3042763) 1 NC_011205.1 catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3); formate hydrogenlyase subunit 3 3042763 hycC 439851003248 hycC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate hydrogenlyase subunit 3 YP_002216823.1 3040937 R 439851 CDS YP_002216824.1 198245498 complement(3042763..3043371) 1 NC_011205.1 identified by match to protein family HMM PF00037; formate hydrogenlyase subunit B 3043371 hycB 439851003249 hycB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate hydrogenlyase subunit B YP_002216824.1 3042763 R 439851 CDS YP_002216825.1 198245051 complement(3043517..3043978) 1 NC_011205.1 regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; formate hydrogenlyase regulatory protein HycA 3043978 439851003250 SeD_A3163 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate hydrogenlyase regulatory protein HycA YP_002216825.1 3043517 R 439851 CDS YP_002216826.1 198243022 3044188..3044544 1 NC_011205.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein 3044544 hypA 439851003251 hypA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase nickel incorporation protein YP_002216826.1 3044188 D 439851 CDS YP_002216827.1 198245739 3044613..3045485 1 NC_011205.1 GTP hydrolase involved in nickel liganding into hydrogenases; hydrogenase nickel incorporation protein HypB 3045485 hypB 439851003252 hypB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase nickel incorporation protein HypB YP_002216827.1 3044613 D 439851 CDS YP_002216828.1 198244183 3045476..3045748 1 NC_011205.1 HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase; hydrogenase assembly chaperone 3045748 hypC2 439851003253 hypC2 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase assembly chaperone YP_002216828.1 3045476 D 439851 CDS YP_002216829.1 198242116 3045748..3046869 1 NC_011205.1 identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075; hydrogenase expression/formation protein HypD 3046869 hypD 439851003254 hypD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase expression/formation protein HypD YP_002216829.1 3045748 D 439851 CDS YP_002216830.1 198242620 3046866..3047876 1 NC_011205.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE 3047876 hypE 439851003255 hypE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase expression/formation protein HypE YP_002216830.1 3046866 D 439851 CDS YP_002216831.1 198243416 3048110..3050173 1 NC_011205.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; formate hydrogenlyase transcriptional activator 3050173 439851003256 SeD_A3169 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate hydrogenlyase transcriptional activator YP_002216831.1 3048110 D 439851 CDS YP_002216832.1 198243883 complement(3050235..3050579) 1 NC_011205.1 hypothetical protein 3050579 439851003257 SeD_A3170 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216832.1 3050235 R 439851 CDS YP_002216833.1 198241872 3050761..3051678 1 NC_011205.1 identified by match to protein family HMM PF01297; periplasmic chelated iron-binding protein YfeA 3051678 439851003258 SeD_A3171 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 periplasmic chelated iron-binding protein YfeA YP_002216833.1 3050761 D 439851 CDS YP_002216834.1 198245900 3051675..3052496 1 NC_011205.1 identified by match to protein family HMM PF00005; chelated iron transport system membrane protein YfeB 3052496 439851003259 SeD_A3172 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chelated iron transport system membrane protein YfeB YP_002216834.1 3051675 D 439851 CDS YP_002216835.1 198242588 3052493..3053353 1 NC_011205.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032; chelated iron transport system membrane protein YfeC 3053353 439851003260 SeD_A3173 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chelated iron transport system membrane protein YfeC YP_002216835.1 3052493 D 439851 CDS YP_002216836.1 198242089 3053344..3054192 1 NC_011205.1 identified by match to protein family HMM PF00950; chelated iron transport system membrane protein YfeD 3054192 439851003261 SeD_A3174 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chelated iron transport system membrane protein YfeD YP_002216836.1 3053344 D 439851 CDS YP_002216837.1 198243446 complement(3055359..3056114) 1 NC_011205.1 transcriptional regulator 3056114 439851003263 SeD_A3176 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002216837.1 3055359 R 439851 CDS YP_002216838.1 198244782 complement(3056498..3057385) 1 NC_011205.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 3057385 439851003264 SeD_A3177 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 AraC family transcriptional regulator YP_002216838.1 3056498 R 439851 CDS YP_002216839.1 198244031 complement(3057730..3058092) 1 NC_011205.1 hypothetical protein 3058092 439851003265 SeD_A3178 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216839.1 3057730 R 439851 CDS YP_002216840.1 198245870 complement(3058179..3058859) 1 NC_011205.1 oxygen-regulated invasion protein OrgB 3058859 439851003266 SeD_A3179 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxygen-regulated invasion protein OrgB YP_002216840.1 3058179 R 439851 CDS YP_002216841.1 198242979 complement(3058816..3059394) 1 NC_011205.1 identified by match to protein family HMM TIGR02555; type III secretion apparatus protein OrgA/MxiK 3059394 439851003267 SeD_A3180 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III secretion apparatus protein OrgA/MxiK YP_002216841.1 3058816 R 439851 CDS YP_002216842.1 198244869 complement(3059387..3060145) 1 NC_011205.1 identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544; type III secretion apparatus lipoprotein, YscJ/HrcJ family 3060145 439851003268 SeD_A3181 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III secretion apparatus lipoprotein, YscJ/HrcJ family YP_002216842.1 3059387 R 439851 CDS YP_002216843.1 198243360 complement(3060142..3060447) 1 NC_011205.1 hypothetical protein 3060447 439851003269 SeD_A3182 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216843.1 3060142 R 439851 CDS YP_002216844.1 198244137 complement(3060466..3060708) 1 NC_011205.1 identified by match to protein family HMM TIGR02105; type III secretion apparatus needle protein 3060708 eprI 439851003270 eprI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III secretion apparatus needle protein YP_002216844.1 3060466 R 439851 CDS YP_002216845.1 198244606 complement(3060733..3061797) 1 NC_011205.1 identified by match to protein family HMM TIGR02554; type III secretion apparatus protein PrgH/EprH 3061797 eprH 439851003271 eprH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III secretion apparatus protein PrgH/EprH YP_002216845.1 3060733 R 439851 CDS YP_002216846.1 198245378 3062227..3063156 1 NC_011205.1 identified by match to protein family HMM PF00165; transcriptional regulator HilD 3063156 439851003272 SeD_A3185 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator HilD YP_002216846.1 3062227 D 439851 CDS YP_002216847.1 198245842 3064247..3065914 1 NC_011205.1 Activates the expression of invasion genes and activates the expression of prgHIJK which is part of the pathogenicity island 1 type III secretion system; invasion protein regulator 3065914 439851003273 SeD_A3186 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 invasion protein regulator YP_002216847.1 3064247 D 439851 CDS YP_002216848.1 198242103 3065932..3066414 1 NC_011205.1 identified by match to protein family HMM PF01464; cell invasion protein 3066414 439851003274 SeD_A3187 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell invasion protein YP_002216848.1 3065932 D 439851 CDS YP_002216849.1 198242758 complement(3066468..3068075) 1 NC_011205.1 identified by match to protein family HMM PF00102; match to protein family HMM PF03545; match to protein family HMM PF09119; effector protein SptP 3068075 439851003275 SeD_A3188 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 effector protein SptP YP_002216849.1 3066468 R 439851 CDS YP_002216850.1 198243507 complement(3068086..3068478) 1 NC_011205.1 identified by match to protein family HMM PF05932; secretion chaperone 3068478 439851003276 SeD_A3189 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secretion chaperone YP_002216850.1 3068086 R 439851 CDS YP_002216851.1 198246250 complement(3068505..3068729) 1 NC_011205.1 identified by glimmer; hypothetical protein 3068729 439851003277 SeD_A3190 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216851.1 3068505 R 439851 CDS YP_002216852.1 198245114 complement(3068809..3069057) 1 NC_011205.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 3069057 439851003278 SeD_A3191 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acyl carrier protein YP_002216852.1 3068809 R 439851 CDS YP_002216853.1 198244466 complement(3069076..3071088) 1 NC_011205.1 identified by match to protein family HMM PF09052; cell invasion protein SipA 3071088 439851003279 SeD_A3192 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell invasion protein SipA YP_002216853.1 3069076 R 439851 CDS YP_002216854.1 198243016 complement(3073511..3075292) 1 NC_011205.1 identified by match to protein family HMM PF03518; cell invasion protein SipB 3075292 439851003282 SeD_A3195 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell invasion protein SipB YP_002216854.1 3073511 R 439851 CDS YP_002216855.1 198242329 complement(3075295..3075792) 1 NC_011205.1 identified by match to protein family HMM PF07720; match to protein family HMM TIGR02552; type III secretion low calcium response chaperone LcrH/SycD 3075792 439851003283 SeD_A3196 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III secretion low calcium response chaperone LcrH/SycD YP_002216855.1 3075295 R 439851 CDS YP_002216856.1 198242012 complement(3075930..3077000) 1 NC_011205.1 Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins; surface presentation of antigens protein SpaS 3077000 439851003284 SeD_A3197 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 surface presentation of antigens protein SpaS YP_002216856.1 3075930 R 439851 CDS YP_002216857.1 198246014 complement(3076987..3077778) 1 NC_011205.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401; type III secretion apparatus protein SpaR/YscT/HrcT 3077778 epaR 439851003285 epaR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III secretion apparatus protein SpaR/YscT/HrcT YP_002216857.1 3076987 R 439851 CDS YP_002216858.1 198245541 complement(3077782..3078042) 1 NC_011205.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403; hypothetical protein 3078042 439851003286 SeD_A3199 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216858.1 3077782 R 439851 CDS YP_002216859.1 198245023 complement(3078068..3078742) 1 NC_011205.1 part of a type III secretory system probably involved in invasion into eukaryotic cells; surface presentation of antigens protein SpaP 3078742 spaP 439851003287 spaP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 surface presentation of antigens protein SpaP YP_002216859.1 3078068 R 439851 CDS YP_002216860.1 198245837 complement(3078732..3079643) 1 NC_011205.1 involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; surface presentation of antigens protein SpaO 3079643 epaO 439851003288 epaO Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 surface presentation of antigens protein SpaO YP_002216860.1 3078732 R 439851 CDS YP_002216861.1 198241799 complement(3079643..3080653) 1 NC_011205.1 identified by match to protein family HMM PF02510; antigen presentation protein SpaN 3080653 439851003289 SeD_A3202 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 antigen presentation protein SpaN YP_002216861.1 3079643 R 439851 CDS YP_002216862.1 198245483 complement(3080653..3081096) 1 NC_011205.1 identified by match to protein family HMM PF02090; surface presentation of antigens protein SpaM 3081096 439851003290 SeD_A3203 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 surface presentation of antigens protein SpaM YP_002216862.1 3080653 R 439851 CDS YP_002216863.1 198246034 complement(3081074..3082369) 1 NC_011205.1 Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase; ATP synthase SpaL 3082369 439851003291 SeD_A3204 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP synthase SpaL YP_002216863.1 3081074 R 439851 CDS YP_002216864.1 198244524 complement(3082366..3082773) 1 NC_011205.1 identified by match to protein family HMM PF03519; surface presentation of antigens protein SpaK 3082773 439851003292 SeD_A3205 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 surface presentation of antigens protein SpaK YP_002216864.1 3082366 R 439851 CDS YP_002216865.1 198244993 complement(3082797..3084854) 1 NC_011205.1 identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399; invasion protein InvA 3084854 439851003293 SeD_A3206 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 invasion protein InvA YP_002216865.1 3082797 R 439851 CDS YP_002216866.1 198242967 complement(3084879..3085997) 1 NC_011205.1 identified by match to protein family HMM PF02523; match to protein family HMM TIGR02568; invasion protein InvE 3085997 439851003294 SeD_A3207 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 invasion protein InvE YP_002216866.1 3084879 R 439851 CDS YP_002216867.1 198243599 complement(3085994..3087538) 1 NC_011205.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516; type III secretion outer membrane pore, YscC/HrcC family 3087538 439851003295 SeD_A3208 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III secretion outer membrane pore, YscC/HrcC family YP_002216867.1 3085994 R 439851 CDS YP_002216868.1 198246224 complement(3087679..3088428) 1 NC_011205.1 identified by match to protein family HMM PF00165; invasion protein 3088428 439851003296 SeD_A3209 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 invasion protein YP_002216868.1 3087679 R 439851 CDS YP_002216869.1 198242313 3088785..3089228 1 NC_011205.1 identified by match to protein family HMM PF04741; cell adherance/invasion protein 3089228 439851003297 SeD_A3210 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell adherance/invasion protein YP_002216869.1 3088785 D 439851 CDS YP_002216870.1 198244826 3090089..3090370 1 NC_011205.1 identified by match to protein family HMM PF08681; ABC transporter 3090370 439851003298 SeD_A3211 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter YP_002216870.1 3090089 D 439851 CDS YP_002216871.1 198244173 3090370..3090894 1 NC_011205.1 identified by match to protein family HMM PF00583; GNAT family acetyltransferase 3090894 439851003299 SeD_A3212 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GNAT family acetyltransferase YP_002216871.1 3090370 D 439851 CDS YP_002216872.1 198245765 3091609..3092265 1 NC_011205.1 identified by match to protein family HMM PF00149; serine/threonine-specific protein phosphatase 2 3092265 439851003301 SeD_A3214 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 serine/threonine-specific protein phosphatase 2 YP_002216872.1 3091609 D 439851 CDS YP_002216873.1 198242851 complement(3092437..3092931) 1 NC_011205.1 hypothetical protein 3092931 439851003302 SeD_A3215 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216873.1 3092437 R 439851 CDS YP_002216874.1 198242342 complement(3092958..3093626) 1 NC_011205.1 hypothetical protein 3093626 439851003303 SeD_A3216 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216874.1 3092958 R 439851 CDS YP_002216875.1 198243227 complement(3094049..3094171) 1 NC_011205.1 hypothetical protein 3094171 439851003304 SeD_A3217 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216875.1 3094049 R 439851 CDS YP_002216876.1 198242699 3094770..3097337 1 NC_011205.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 3097337 mutS 439851003305 mutS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA mismatch repair protein MutS YP_002216876.1 3094770 D 439851 CDS YP_002216877.1 198244091 complement(3097393..3097773) 1 NC_011205.1 hypothetical protein 3097773 439851003306 SeD_A3219 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216877.1 3097393 R 439851 CDS YP_002216878.1 198243592 complement(3097770..3098978) 1 NC_011205.1 identified by match to protein family HMM PF07690; major facilitator family transporter 3098978 439851003307 SeD_A3220 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 major facilitator family transporter YP_002216878.1 3097770 R 439851 CDS YP_002216879.1 198244448 3099087..3099998 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 3099998 439851003308 SeD_A3221 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR family transcriptional regulator YP_002216879.1 3099087 D 439851 CDS YP_002216880.1 198243529 complement(3100040..3101536) 1 NC_011205.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00791; hypothetical protein 3101536 439851003309 SeD_A3222 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216880.1 3100040 R 439851 CDS YP_002216881.1 198244663 complement(3101533..3102483) 1 NC_011205.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family protein 3102483 439851003310 SeD_A3223 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NAD dependent epimerase/dehydratase family protein YP_002216881.1 3101533 R 439851 CDS YP_002216882.1 198242287 complement(3103303..3103941) 1 NC_011205.1 identified by match to protein family HMM PF00596; aldolase 3103941 439851003312 SeD_A3225 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aldolase YP_002216882.1 3103303 R 439851 CDS YP_002216883.1 198246033 complement(3103938..3105200) 1 NC_011205.1 identified by match to protein family HMM PF07005; hypothetical protein 3105200 439851003313 SeD_A3226 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216883.1 3103938 R 439851 CDS YP_002216884.1 198242000 complement(3105194..3106117) 1 NC_011205.1 identified by match to protein family HMM PF03446; 6-phosphogluconate dehydrogenase 3106117 439851003314 SeD_A3227 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 6-phosphogluconate dehydrogenase YP_002216884.1 3105194 R 439851 CDS YP_002216885.1 198245883 3106314..3107078 1 NC_011205.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family transcriptional regulator 3107078 439851003315 SeD_A3228 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DeoR family transcriptional regulator YP_002216885.1 3106314 D 439851 CDS YP_002216886.1 198242888 complement(3107097..3107501) 1 NC_011205.1 identified by match to protein family HMM PF01047; transcriptional regulator HosA 3107501 439851003316 SeD_A3229 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator HosA YP_002216886.1 3107097 R 439851 CDS YP_002216887.1 198242826 3107672..3108265 1 NC_011205.1 identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421; 4-hydroxybenzoate decarboxylase subunit B 3108265 kpdB 439851003317 kpdB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-hydroxybenzoate decarboxylase subunit B YP_002216887.1 3107672 D 439851 CDS YP_002216888.1 198244657 3108265..3109692 1 NC_011205.1 identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148; 4-hydroxybenzoate decarboxylase subunit C 3109692 kpdC 439851003318 kpdC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-hydroxybenzoate decarboxylase subunit C YP_002216888.1 3108265 D 439851 CDS YP_002216889.1 198242921 3109703..3109939 1 NC_011205.1 4-hydroxybenzoate decarboxylase subunit D 3109939 kpdD 439851003319 kpdD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-hydroxybenzoate decarboxylase subunit D YP_002216889.1 3109703 D 439851 CDS YP_002216890.1 198243199 complement(3109984..3110976) 1 NC_011205.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS 3110976 rpoS 439851003320 rpoS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RNA polymerase sigma factor RpoS YP_002216890.1 3109984 R 439851 CDS YP_002216891.1 198243830 complement(3111039..3112172) 1 NC_011205.1 outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus; lipoprotein NlpD 3112172 nlpD 439851003321 nlpD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein NlpD YP_002216891.1 3111039 R 439851 CDS YP_008169834.1 528879902 3112012..3112209 1 NC_011205.1 hypothetical protein 3112209 439851003322 SeD_A3235 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_008169834.1 3112012 D 439851 CDS YP_002216892.1 198242854 complement(3112348..3112974) 1 NC_011205.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 3112974 pcm 439851003323 pcm Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 protein-L-isoaspartate O-methyltransferase YP_002216892.1 3112348 R 439851 CDS YP_002216893.1 198245147 complement(3112968..3113735) 1 NC_011205.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 3113735 surE 439851003324 surE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 stationary phase survival protein SurE YP_002216893.1 3112968 R 439851 CDS YP_002216894.1 198245740 complement(3113710..3114759) 1 NC_011205.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 3114759 truD 439851003325 truD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA pseudouridine synthase D YP_002216894.1 3113710 R 439851 CDS YP_002216895.1 198244141 complement(3114756..3115235) 1 NC_011205.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3115235 ispF 439851003326 ispF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_002216895.1 3114756 R 439851 CDS YP_002216896.1 198244815 complement(3115235..3115945) 1 NC_011205.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 3115945 ispD 439851003327 ispD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_002216896.1 3115235 R 439851 CDS YP_002216897.1 198243949 complement(3115964..3116275) 1 NC_011205.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB 3116275 ftsB 439851003328 ftsB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell division protein FtsB YP_002216897.1 3115964 R 439851 CDS YP_002216898.1 198243332 complement(3116466..3116744) 1 NC_011205.1 hypothetical protein 3116744 439851003329 SeD_A3242 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216898.1 3116466 R 439851 CDS YP_002216899.1 198244125 complement(3116840..3117445) 1 NC_011205.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 3117445 cysC 439851003330 cysC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 adenylylsulfate kinase YP_002216899.1 3116840 R 439851 CDS YP_002216900.1 198245728 complement(3117432..3118871) 1 NC_011205.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 3118871 cysN 439851003331 cysN Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfate adenylyltransferase subunit 1 YP_002216900.1 3117432 R 439851 CDS YP_002216901.1 198242810 complement(3118881..3119789) 1 NC_011205.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 3119789 cysD 439851003332 cysD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfate adenylyltransferase subunit 2 YP_002216901.1 3118881 R 439851 CDS YP_002216902.1 198242163 3120040..3121086 1 NC_011205.1 catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; alkaline phosphatase 3121086 439851003333 SeD_A3246 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 alkaline phosphatase YP_002216902.1 3120040 D 439851 CDS YP_002216904.1 198243922 complement(3121348..3121641) 1 NC_011205.1 identified by match to protein family HMM TIGR01873; hypothetical protein 3121641 cas2 439851003334 cas2 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216904.1 3121348 R 439851 CDS YP_002216905.1 198243044 complement(3121641..3122561) 1 NC_011205.1 identified by match to protein family HMM TIGR00287; crispr-associated protein Cas1 3122561 cas1 439851003335 cas1 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 crispr-associated protein Cas1 YP_002216905.1 3121641 R 439851 CDS YP_002216906.1 198244792 complement(3122558..3123208) 1 NC_011205.1 identified by match to protein family HMM PF08798; match to protein family HMM TIGR01907; crispr-associated protein, Cse3 family 3123208 cse3 439851003336 cse3 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 crispr-associated protein, Cse3 family YP_002216906.1 3122558 R 439851 CDS YP_002216907.1 198244065 complement(3123190..3123936) 1 NC_011205.1 identified by match to protein family HMM TIGR01868; match to protein family HMM TIGR02593; CRISPR-associated protein Cas5 3123936 cas5 439851003337 cas5 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 CRISPR-associated protein Cas5 YP_002216907.1 3123190 R 439851 CDS YP_002216908.1 198244668 complement(3123947..3125005) 1 NC_011205.1 identified by match to protein family HMM TIGR01869; crispr-associated protein, Cse4 family 3125005 cse4 439851003338 cse4 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 crispr-associated protein, Cse4 family YP_002216908.1 3123947 R 439851 CDS YP_002216909.1 198244986 complement(3125019..3125579) 1 NC_011205.1 identified by match to protein family HMM TIGR02548; crispr-associated protein, Cse2 family 3125579 cse2 439851003339 cse2 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 crispr-associated protein, Cse2 family YP_002216909.1 3125019 R 439851 CDS YP_002216910.1 198243398 complement(3125576..3127132) 1 NC_011205.1 identified by match to protein family HMM TIGR02547; crispr-associated protein, Cse1 family 3127132 cse1 439851003340 cse1 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 crispr-associated protein, Cse1 family YP_002216910.1 3125576 R 439851 CDS YP_002216911.1 198243421 3130122..3131204 1 NC_011205.1 Sop effector protein SopD 3131204 439851003342 SeD_A3257 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Sop effector protein SopD YP_002216911.1 3130122 D 439851 CDS YP_002216912.1 198241758 complement(3131292..3132026) 1 NC_011205.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 3132026 cysH 439851003343 cysH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoadenosine phosphosulfate reductase YP_002216912.1 3131292 R 439851 CDS YP_002216913.1 198242124 complement(3132128..3133840) 1 NC_011205.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 3133840 cysI 439851003344 cysI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfite reductase subunit beta YP_002216913.1 3132128 R 439851 CDS YP_002216914.1 198242803 complement(3133840..3135639) 1 NC_011205.1 catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; sulfite reductase subunit alpha 3135639 cysJ 439851003345 cysJ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfite reductase subunit alpha YP_002216914.1 3133840 R 439851 CDS YP_002216915.1 198246009 complement(3135964..3136119) 1 NC_011205.1 identified by glimmer; hypothetical protein 3136119 439851003346 SeD_A3261 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216915.1 3135964 R 439851 CDS YP_002216916.1 198244543 3136063..3136425 1 NC_011205.1 identified by match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase 3136425 439851003347 SeD_A3262 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 6-pyruvoyl tetrahydrobiopterin synthase YP_002216916.1 3136063 D 439851 CDS YP_002216917.1 198245034 complement(3136513..3137310) 1 NC_011205.1 beta-lactamase domain-containing protein 3137310 439851003348 SeD_A3263 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 beta-lactamase domain-containing protein YP_002216917.1 3136513 R 439851 CDS YP_002216918.1 198242996 complement(3137862..3138008) 1 NC_011205.1 identified by glimmer; hypothetical protein 3138008 439851003349 SeD_A3264 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216918.1 3137862 R 439851 CDS YP_002216919.1 198243481 complement(3138039..3138710) 1 NC_011205.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 3138710 439851003350 SeD_A3265 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 radical SAM domain-containing protein YP_002216919.1 3138039 R 439851 CDS YP_002216920.1 198241971 complement(3138846..3140144) 1 NC_011205.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 3140144 eno 439851003351 eno Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphopyruvate hydratase YP_002216920.1 3138846 R 439851 CDS YP_002216921.1 198243508 complement(3140227..3141864) 1 NC_011205.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 3141864 pyrG 439851003352 pyrG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 CTP synthetase YP_002216921.1 3140227 R 439851 CDS YP_002216922.1 198241999 complement(3142092..3142892) 1 NC_011205.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 3142892 mazG 439851003353 mazG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nucleoside triphosphate pyrophosphohydrolase YP_002216922.1 3142092 R 439851 CDS YP_002216923.1 198242506 3143498..3144085 1 NC_011205.1 identified by match to protein family HMM PF00419; fimbrial subunit 3144085 439851003354 SeD_A3269 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial subunit YP_002216923.1 3143498 D 439851 CDS YP_002216924.1 198246073 3144219..3146864 1 NC_011205.1 identified by match to protein family HMM PF00577; fimbrial usher protein 3146864 439851003355 SeD_A3270 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial usher protein YP_002216924.1 3144219 D 439851 CDS YP_002216925.1 198243804 3146877..3147650 1 NC_011205.1 identified by match to protein family HMM PF00345; chaperone protein PapD 3147650 439851003356 SeD_A3271 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chaperone protein PapD YP_002216925.1 3146877 D 439851 CDS YP_002216926.1 198244747 3147670..3148176 1 NC_011205.1 identified by match to protein family HMM PF00419; fimbrial subunit 3148176 439851003357 SeD_A3272 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial subunit YP_002216926.1 3147670 D 439851 CDS YP_002216927.1 198245500 3148191..3148661 1 NC_011205.1 identified by match to protein family HMM PF00419; fimbrial subunit 3148661 439851003358 SeD_A3273 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial subunit YP_002216927.1 3148191 D 439851 CDS YP_002216928.1 198245692 3148658..3149194 1 NC_011205.1 identified by match to protein family HMM PF00419; fimbrial subunit 3149194 439851003359 SeD_A3274 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial subunit YP_002216928.1 3148658 D 439851 CDS YP_002216929.1 198241998 3149249..3150280 1 NC_011205.1 hypothetical protein 3150280 439851003360 SeD_A3275 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216929.1 3149249 D 439851 CDS YP_002216930.1 198244188 complement(3150630..3152864) 1 NC_011205.1 (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; GDP/GTP pyrophosphokinase 3152864 relA 439851003361 relA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GDP/GTP pyrophosphokinase YP_002216930.1 3150630 R 439851 CDS YP_002216931.1 198244789 complement(3152916..3154211) 1 NC_011205.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 3154211 rumA 439851003362 rumA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 23S rRNA 5-methyluridine methyltransferase YP_002216931.1 3152916 R 439851 CDS YP_002216932.1 198245109 3154269..3157025 1 NC_011205.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 3157025 439851003363 SeD_A3278 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hybrid sensory histidine kinase BarA YP_002216932.1 3154269 D 439851 CDS YP_002216933.1 198245688 complement(3157069..3158211) 1 NC_011205.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 2 3158211 439851003364 SeD_A3279 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycerate kinase 2 YP_002216933.1 3157069 R 439851 CDS YP_002216934.1 198242129 complement(3158289..3159629) 1 NC_011205.1 identified by match to protein family HMM PF01188; match to protein family HMM TIGR03247; glucarate dehydratase 3159629 439851003365 SeD_A3280 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucarate dehydratase YP_002216934.1 3158289 R 439851 CDS YP_002216935.1 198245463 complement(3160987..3162345) 1 NC_011205.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00893; glucarate permease 3162345 gudP 439851003368 gudP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucarate permease YP_002216935.1 3160987 R 439851 CDS YP_002216936.1 198245213 3162428..3162676 1 NC_011205.1 hypothetical protein 3162676 439851003369 SeD_A3284 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216936.1 3162428 D 439851 CDS YP_002216937.1 198242463 complement(3162826..3163275) 1 NC_011205.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 3163275 439851003370 SeD_A3285 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flavodoxin YP_002216937.1 3162826 R 439851 CDS YP_002216938.1 198243086 complement(3163294..3164076) 1 NC_011205.1 catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C 3164076 439851003371 SeD_A3286 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA pseudouridine synthase C YP_002216938.1 3163294 R 439851 CDS YP_002216939.1 198242433 complement(3164076..3164405) 1 NC_011205.1 identified by match to protein family HMM PF04287; hypothetical protein 3164405 439851003372 SeD_A3287 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216939.1 3164076 R 439851 CDS YP_002216940.1 198246030 complement(3165017..3165577) 1 NC_011205.1 SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 3165577 439851003374 SeD_A3289 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 SecY interacting protein Syd YP_002216940.1 3165017 R 439851 CDS YP_002216941.1 198245914 3165630..3166478 1 NC_011205.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3166478 queF 439851003375 queF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 7-cyano-7-deazaguanine reductase YP_002216941.1 3165630 D 439851 CDS YP_002216942.1 198243147 3166591..3167955 1 NC_011205.1 identified by match to protein family HMM PF03641; lysine decarboxylase family protein 3167955 439851003376 SeD_A3291 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lysine decarboxylase family protein YP_002216942.1 3166591 D 439851 CDS YP_002216943.1 198245057 complement(3167952..3168071) 1 NC_011205.1 identified by glimmer; hypothetical protein 3168071 439851003377 SeD_A3292 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216943.1 3167952 R 439851 CDS YP_002216944.1 198243144 3168520..3169809 1 NC_011205.1 identified by match to protein family HMM TIGR00814; serine transporter family protein 3169809 439851003378 SeD_A3293 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 serine transporter family protein YP_002216944.1 3168520 D 439851 CDS YP_002216945.1 198243485 3169868..3171235 1 NC_011205.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 3171235 439851003379 SeD_A3294 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-serine ammonia-lyase YP_002216945.1 3169868 D 439851 CDS YP_002216946.1 198241843 3171405..3172160 1 NC_011205.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3172160 xni 439851003380 xni Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 exonuclease IX YP_002216946.1 3171405 D 439851 CDS YP_002216947.1 198245557 complement(3172252..3173400) 1 NC_011205.1 identified by match to protein family HMM PF00465; match to protein family HMM TIGR02638; L-1,2-propanediol oxidoreductase 3173400 fucO 439851003381 fucO Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-1,2-propanediol oxidoreductase YP_002216947.1 3172252 R 439851 CDS YP_002216948.1 198245548 complement(3173417..3174064) 1 NC_011205.1 catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase 3174064 fucA 439851003382 fucA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-fuculose phosphate aldolase YP_002216948.1 3173417 R 439851 CDS YP_002216949.1 198246244 complement(3174218..3174385) 1 NC_011205.1 hypothetical protein 3174385 439851003383 SeD_A3298 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216949.1 3174218 R 439851 CDS YP_002216950.1 198244339 complement(3174471..3174593) 1 NC_011205.1 identified by glimmer; hypothetical protein 3174593 439851003384 SeD_A3299 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216950.1 3174471 R 439851 CDS YP_002216951.1 198244945 3174619..3175935 1 NC_011205.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00885; L-fucose transporter 3175935 fucP 439851003385 fucP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-fucose transporter YP_002216951.1 3174619 D 439851 CDS YP_002216952.1 198242481 3175967..3177742 1 NC_011205.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 3177742 fucI 439851003386 fucI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-fucose isomerase YP_002216952.1 3175967 D 439851 CDS YP_002216953.1 198242704 3177843..3179261 1 NC_011205.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR02628; L-fuculokinase 3179261 fucK 439851003387 fucK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-fuculokinase YP_002216953.1 3177843 D 439851 CDS YP_002216954.1 198242575 3179263..3179685 1 NC_011205.1 identified by match to protein family HMM PF05025; fuscose operon protein FucU 3179685 439851003388 SeD_A3303 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fuscose operon protein FucU YP_002216954.1 3179263 D 439851 CDS YP_002216955.1 198245189 3179743..3180453 1 NC_011205.1 regulates expression of genes involved in L-fucose utilization; DNA-binding transcriptional activator FucR 3180453 439851003389 SeD_A3304 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional activator FucR YP_002216955.1 3179743 D 439851 CDS YP_002216956.1 198245568 complement(3180512..3181612) 1 NC_011205.1 RNA 2'-O-ribose methyltransferase 3181612 439851003390 SeD_A3305 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RNA 2'-O-ribose methyltransferase YP_002216956.1 3180512 R 439851 CDS YP_002216957.1 198246214 complement(3181605..3182000) 1 NC_011205.1 identified by match to protein family HMM PF04241; hypothetical protein 3182000 439851003391 SeD_A3306 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216957.1 3181605 R 439851 CDS YP_002216958.1 198245105 complement(3182019..3182936) 1 NC_011205.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 3182936 gcvA 439851003392 gcvA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional activator GcvA YP_002216958.1 3182019 R 439851 CDS YP_002216959.1 198243268 complement(3183283..3183510) 1 NC_011205.1 identified by match to protein family HMM PF06004; lipoprotein 3183510 439851003394 SeD_A3309 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein YP_002216959.1 3183283 R 439851 CDS YP_002216960.1 198243622 3183703..3184908 1 NC_011205.1 identified by match to protein family HMM PF00266; cysteine sulfinate desulfinase 3184908 csdA 439851003395 csdA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cysteine sulfinate desulfinase YP_002216960.1 3183703 D 439851 CDS YP_002216961.1 198241976 3184908..3185351 1 NC_011205.1 identified by match to protein family HMM PF02657; chain A, Northeast Structural Genomic Consortium Target Er75 3185351 439851003396 SeD_A3311 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chain A, Northeast Structural Genomic Consortium Target Er75 YP_002216961.1 3184908 D 439851 CDS YP_002216962.1 198246061 3185624..3186538 1 NC_011205.1 identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; RarD protein 3186538 rarD 439851003397 rarD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RarD protein YP_002216962.1 3185624 D 439851 CDS YP_002216963.1 198245559 complement(3186590..3187396) 1 NC_011205.1 identified by match to protein family HMM PF00899; ThiF family protein 3187396 439851003398 SeD_A3313 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ThiF family protein YP_002216963.1 3186590 R 439851 CDS YP_002216964.1 198242914 3190589..3191920 1 NC_011205.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 3191920 argA 439851003403 argA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N-acetylglutamate synthase YP_002216964.1 3190589 D 439851 CDS YP_002216965.1 198243579 complement(3192023..3193858) 1 NC_011205.1 helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha 3193858 recD 439851003404 recD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 exonuclease V subunit alpha YP_002216965.1 3192023 R 439851 CDS YP_002216966.1 198242178 complement(3193855..3197400) 1 NC_011205.1 helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta 3197400 recB 439851003405 recB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 exonuclease V subunit beta YP_002216966.1 3193855 R 439851 CDS YP_002216967.1 198242678 complement(3197393..3200281) 1 NC_011205.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; protease 3 3200281 439851003406 SeD_A3321 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 protease 3 YP_002216967.1 3197393 R 439851 CDS YP_002216968.1 198242903 complement(3200459..3203830) 1 NC_011205.1 catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma 3203830 recC 439851003407 recC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 exonuclease V subunit gamma YP_002216968.1 3200459 R 439851 CDS YP_002216969.1 198243918 complement(3203846..3204166) 1 NC_011205.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; hypothetical protein 3204166 ppdC 439851003408 ppdC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216969.1 3203846 R 439851 CDS YP_002216970.1 198244195 complement(3204151..3204558) 1 NC_011205.1 hypothetical protein 3204558 439851003409 SeD_A3324 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216970.1 3204151 R 439851 CDS YP_002216971.1 198243455 complement(3204555..3205118) 1 NC_011205.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; hypothetical protein 3205118 439851003410 SeD_A3325 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216971.1 3204555 R 439851 CDS YP_002216972.1 198243863 complement(3205109..3205579) 1 NC_011205.1 identified by match to protein family HMM TIGR02532; hypothetical protein 3205579 439851003411 SeD_A3326 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216972.1 3205109 R 439851 CDS YP_002216973.1 198244868 3205628..3205771 1 NC_011205.1 hypothetical protein 3205771 439851003412 SeD_A3327 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216973.1 3205628 D 439851 CDS YP_002216974.1 198243101 complement(3205764..3206558) 1 NC_011205.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 3206558 thyA 439851003413 thyA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thymidylate synthase YP_002216974.1 3205764 R 439851 CDS YP_002216975.1 198244416 complement(3206565..3207440) 1 NC_011205.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3207440 lgt 439851003414 lgt Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 prolipoprotein diacylglyceryl transferase YP_002216975.1 3206565 R 439851 CDS YP_002216976.1 198243829 complement(3207656..3209902) 1 NC_011205.1 member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain 3209902 ptsP 439851003415 ptsP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain YP_002216976.1 3207656 R 439851 CDS YP_002216977.1 198243328 complement(3209915..3210445) 1 NC_011205.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 3210445 nudH 439851003416 nudH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dinucleoside polyphosphate hydrolase YP_002216977.1 3209915 R 439851 CDS YP_002216978.1 198244746 3210967..3211092 1 NC_011205.1 identified by glimmer; hypothetical protein 3211092 439851003417 SeD_A3332 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216978.1 3210967 D 439851 CDS YP_002216979.1 198244271 3211128..3211823 1 NC_011205.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3211823 mutH 439851003418 mutH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA mismatch repair protein YP_002216979.1 3211128 D 439851 CDS YP_002216980.1 198245243 3212005..3212718 1 NC_011205.1 identified by match to protein family HMM PF03741; hypothetical protein 3212718 439851003419 SeD_A3334 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216980.1 3212005 D 439851 CDS YP_002216981.1 198242598 3212888..3213106 1 NC_011205.1 identified by match to protein family HMM PF06004; hypothetical protein 3213106 439851003420 SeD_A3335 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216981.1 3212888 D 439851 CDS YP_002216982.1 198244370 3213297..3214337 1 NC_011205.1 complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; aldo-keto reductase 3214337 tas 439851003421 tas Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aldo-keto reductase YP_002216982.1 3213297 D 439851 CDS YP_002216983.1 198243654 complement(3214424..3215626) 1 NC_011205.1 identified by match to protein family HMM PF07690; lysophospholipid transporter LplT 3215626 439851003422 SeD_A3337 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lysophospholipid transporter LplT YP_002216983.1 3214424 R 439851 CDS YP_002216984.1 198245366 complement(3215619..3217778) 1 NC_011205.1 Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase 3217778 439851003423 SeD_A3338 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase YP_002216984.1 3215619 R 439851 CDS YP_002216985.1 198241818 complement(3218247..3218381) 1 NC_011205.1 hypothetical protein 3218381 439851003426 SeD_A3343 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216985.1 3218247 R 439851 CDS YP_002216986.1 198242171 3218371..3219399 1 NC_011205.1 controls transcription of galETKM; DNA-binding transcriptional regulator GalR 3219399 439851003427 SeD_A3342 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator GalR YP_002216986.1 3218371 D 439851 CDS YP_002216987.1 198243955 3219413..3220432 1 NC_011205.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; HTH-type transcriptional regulator AscG 3220432 439851003428 SeD_A3344 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 HTH-type transcriptional regulator AscG YP_002216987.1 3219413 D 439851 CDS YP_002216988.1 198243318 complement(3220442..3221704) 1 NC_011205.1 catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase 3221704 lysA 439851003429 lysA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 diaminopimelate decarboxylase YP_002216988.1 3220442 R 439851 CDS YP_002216989.1 198242756 3221822..3222757 1 NC_011205.1 activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; DNA-binding transcriptional regulator LysR 3222757 439851003430 SeD_A3346 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator LysR YP_002216989.1 3221822 D 439851 CDS YP_002216990.1 198242718 complement(3222729..3223436) 1 NC_011205.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035; racemase 3223436 439851003431 SeD_A3347 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 racemase YP_002216990.1 3222729 R 439851 CDS YP_002216991.1 198244549 complement(3223549..3224967) 1 NC_011205.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; L-arabinose/proton symport protein 3224967 439851003432 SeD_A3348 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-arabinose/proton symport protein YP_002216991.1 3223549 R 439851 CDS YP_002216992.1 198243848 complement(3225321..3226082) 1 NC_011205.1 catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase 3226082 kduD 439851003433 kduD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-deoxy-D-gluconate 3-dehydrogenase YP_002216992.1 3225321 R 439851 CDS YP_002216993.1 198245273 complement(3226139..3226975) 1 NC_011205.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 3226975 kduI 439851003434 kduI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 5-keto-4-deoxyuronate isomerase YP_002216993.1 3226139 R 439851 CDS YP_002216994.1 198244797 complement(3226966..3227136) 1 NC_011205.1 identified by glimmer; hypothetical protein 3227136 439851003435 SeD_A3351 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216994.1 3226966 R 439851 CDS YP_002216995.1 198241745 complement(3227405..3228613) 1 NC_011205.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 3228613 439851003436 SeD_A3352 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetyl-CoA acetyltransferase YP_002216995.1 3227405 R 439851 CDS YP_002216996.1 198245790 complement(3228706..3229569) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 3229569 439851003437 SeD_A3353 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR family transcriptional regulator YP_002216996.1 3228706 R 439851 CDS YP_002216997.1 198242778 3229673..3230128 1 NC_011205.1 identified by match to protein family HMM PF05232; transmembrane pair domain-containing protein 3230128 439851003438 SeD_A3354 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transmembrane pair domain-containing protein YP_002216997.1 3229673 D 439851 CDS YP_002216998.1 198242272 3230125..3230253 1 NC_011205.1 identified by glimmer; hypothetical protein 3230253 439851003439 SeD_A3355 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002216998.1 3230125 D 439851 CDS YP_002216999.1 198245911 3230270..3231499 1 NC_011205.1 inner membrane transport protein YqeG 3231499 439851003440 SeD_A3356 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane transport protein YqeG YP_002216999.1 3230270 D 439851 CDS YP_002217000.1 198245474 complement(3231530..3231802) 1 NC_011205.1 identified by match to protein family HMM PF02583; hypothetical protein 3231802 439851003441 SeD_A3357 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217000.1 3231530 R 439851 CDS YP_002217001.1 198244004 3231923..3232807 1 NC_011205.1 membrane protein conferring nickel and cobalt resistance; nickel/cobalt efflux protein RcnA 3232807 439851003442 SeD_A3358 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nickel/cobalt efflux protein RcnA YP_002217001.1 3231923 D 439851 CDS YP_002217002.1 198244433 complement(3233017..3233775) 1 NC_011205.1 hypothetical protein 3233775 439851003443 SeD_A3359 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217002.1 3233017 R 439851 CDS YP_002217003.1 198242978 complement(3233762..3234274) 1 NC_011205.1 identified by match to protein family HMM PF07180; hypothetical protein 3234274 439851003444 SeD_A3360 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217003.1 3233762 R 439851 CDS YP_002217004.1 198243461 complement(3234418..3235494) 1 NC_011205.1 outer membrane protein 3235494 439851003445 SeD_A3361 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein YP_002217004.1 3234418 R 439851 CDS YP_002217005.1 198244309 complement(3235491..3236234) 1 NC_011205.1 identified by match to protein family HMM PF00345; pili assembly chaperone protein 3236234 439851003446 SeD_A3362 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pili assembly chaperone protein YP_002217005.1 3235491 R 439851 CDS YP_002217006.1 198244928 complement(3236275..3238764) 1 NC_011205.1 identified by match to protein family HMM PF00577; fimbrial usher protein 3238764 439851003447 SeD_A3363 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial usher protein YP_002217006.1 3236275 R 439851 CDS YP_002217007.1 198243703 complement(3238884..3239465) 1 NC_011205.1 identified by match to protein family HMM PF00419; fimbrial protein 3239465 439851003448 SeD_A3364 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial protein YP_002217007.1 3238884 R 439851 CDS YP_002217008.1 198243692 complement(3240184..3240816) 1 NC_011205.1 hypothetical protein 3240816 439851003449 SeD_A3365 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217008.1 3240184 R 439851 CDS YP_002217009.1 198241894 complement(3240863..3241399) 1 NC_011205.1 identified by match to protein family HMM PF06316; outer membrane protein 3241399 439851003450 SeD_A3366 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein YP_002217009.1 3240863 R 439851 CDS YP_002217010.1 198245660 complement(3241445..3241630) 1 NC_011205.1 hypothetical protein 3241630 439851003451 SeD_A3367 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217010.1 3241445 R 439851 CDS YP_002217011.1 198243933 complement(3242207..3242608) 1 NC_011205.1 stability determinant protein; plasmid maintenance protein 3242608 439851003452 SeD_A3368 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid maintenance protein YP_002217011.1 3242207 R 439851 CDS YP_002217012.1 198243468 complement(3242605..3242832) 1 NC_011205.1 virulence-associated protein 3242832 439851003453 SeD_A3369 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 virulence-associated protein YP_002217012.1 3242605 R 439851 CDS YP_002217013.1 198241777 complement(3243407..3243619) 1 NC_011205.1 identified by glimmer; hypothetical protein 3243619 439851003454 SeD_A3371 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217013.1 3243407 R 439851 CDS YP_002217014.1 198242570 3243578..3244378 1 NC_011205.1 identified by match to protein family HMM PF07313; inner membrane protein 3244378 439851003455 SeD_A3370 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002217014.1 3243578 D 439851 CDS YP_002217015.1 198242995 complement(3244663..3245415) 1 NC_011205.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551; hypothetical protein 3245415 439851003457 SeD_A3373 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217015.1 3244663 R 439851 CDS YP_002217016.1 198243453 3245501..3245635 1 NC_011205.1 identified by glimmer; hypothetical protein 3245635 439851003458 SeD_A3374 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217016.1 3245501 D 439851 CDS YP_002217017.1 198242102 3245686..3246231 1 NC_011205.1 catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; isopentenyl-diphosphate delta-isomerase 3246231 idi 439851003459 idi Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 isopentenyl-diphosphate delta-isomerase YP_002217017.1 3245686 D 439851 CDS YP_002217018.1 198242473 complement(3246307..3247824) 1 NC_011205.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 3247824 lysS 439851003460 lysS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lysyl-tRNA synthetase YP_002217018.1 3246307 R 439851 CDS YP_002217019.1 198243236 complement(3249037..3250770) 1 NC_011205.1 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ 3250770 recJ 439851003462 recJ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ssDNA exonuclease RecJ YP_002217019.1 3249037 R 439851 CDS YP_002217020.1 198242869 complement(3250776..3251489) 1 NC_011205.1 DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; thiol:disulfide interchange protein DsbC 3251489 439851003463 SeD_A3379 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiol:disulfide interchange protein DsbC YP_002217020.1 3250776 R 439851 CDS YP_002217021.1 198244272 complement(3251513..3252409) 1 NC_011205.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 3252409 xerD 439851003464 xerD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 site-specific tyrosine recombinase XerD YP_002217021.1 3251513 R 439851 CDS YP_002217022.1 198243621 3252465..3253043 1 NC_011205.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin FldB 3253043 439851003465 SeD_A3381 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flavodoxin FldB YP_002217022.1 3252465 D 439851 CDS YP_002217023.1 198245215 complement(3253096..3253509) 1 NC_011205.1 identified by match to protein family HMM PF07254; inner membrane protein 3253509 439851003466 SeD_A3382 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002217023.1 3253096 R 439851 CDS YP_002217024.1 198244586 complement(3253490..3253756) 1 NC_011205.1 identified by match to protein family HMM PF03937; hypothetical protein 3253756 439851003467 SeD_A3384 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217024.1 3253490 R 439851 CDS YP_002217025.1 198242850 3253755..3253991 1 NC_011205.1 hypothetical protein 3253991 439851003468 SeD_A3383 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217025.1 3253755 D 439851 CDS YP_002217026.1 198242202 3254006..3254986 1 NC_011205.1 physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator; global regulator 3254986 439851003469 SeD_A3385 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 global regulator YP_002217026.1 3254006 D 439851 CDS YP_002217027.1 198243670 complement(3255102..3255761) 1 NC_011205.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin-3 3255761 439851003470 SeD_A3386 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hemolysin-3 YP_002217027.1 3255102 R 439851 CDS YP_002217028.1 198243053 complement(3255923..3256237) 1 NC_011205.1 identified by match to protein family HMM PF06164; hypothetical protein 3256237 439851003471 SeD_A3387 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217028.1 3255923 R 439851 CDS YP_002217029.1 198243256 3256392..3257825 1 NC_011205.1 identified by match to protein family HMM PF00232; 6-phospho-beta-glucosidase 3257825 439851003472 SeD_A3388 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 6-phospho-beta-glucosidase YP_002217029.1 3256392 D 439851 CDS YP_002217030.1 198242459 complement(3257873..3258766) 1 NC_011205.1 outer membrane protein 3258766 439851003473 SeD_A3389 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane protein YP_002217030.1 3257873 R 439851 CDS YP_002217031.1 198244854 complement(3259222..3262095) 1 NC_011205.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 3262095 gcvP 439851003474 gcvP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycine dehydrogenase YP_002217031.1 3259222 R 439851 CDS YP_002217032.1 198244396 complement(3262258..3262647) 1 NC_011205.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 3262647 gcvH 439851003475 gcvH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycine cleavage system protein H YP_002217032.1 3262258 R 439851 CDS YP_002217033.1 198246130 complement(3262673..3263767) 1 NC_011205.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 3263767 gcvT 439851003476 gcvT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycine cleavage system aminomethyltransferase T YP_002217033.1 3262673 R 439851 CDS YP_002217034.1 198244650 3263808..3263948 1 NC_011205.1 identified by glimmer; hypothetical protein 3263948 439851003477 SeD_A3393 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217034.1 3263808 D 439851 CDS YP_002217035.1 198242450 complement(3264223..3265425) 1 NC_011205.1 identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988; hypothetical protein 3265425 439851003478 SeD_A3394 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217035.1 3264223 R 439851 CDS YP_002217036.1 198241802 complement(3265551..3266729) 1 NC_011205.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 3266729 ubiH 439851003479 ubiH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-octaprenyl-6-methoxyphenyl hydroxylase YP_002217036.1 3265551 R 439851 CDS YP_002217037.1 198243720 complement(3266726..3268042) 1 NC_011205.1 exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; proline aminopeptidase P II 3268042 pepP 439851003480 pepP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 proline aminopeptidase P II YP_002217037.1 3266726 R 439851 CDS YP_002217038.1 198243085 complement(3268068..3268646) 1 NC_011205.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 3268646 439851003481 SeD_A3397 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217038.1 3268068 R 439851 CDS YP_002217039.1 198243303 3268969..3269142 1 NC_011205.1 hypothetical protein 3269142 439851003482 SeD_A3398 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217039.1 3268969 D 439851 CDS YP_002217040.1 198243316 3269388..3269984 1 NC_011205.1 ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; ligase 3269984 439851003484 SeD_A3400 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ligase YP_002217040.1 3269388 D 439851 CDS YP_002217041.1 198243954 complement(3270365..3271597) 1 NC_011205.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 3271597 serA 439851003486 serA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-3-phosphoglycerate dehydrogenase YP_002217041.1 3270365 R 439851 CDS YP_002217042.1 198245210 3272677..3273570 1 NC_011205.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3273570 439851003488 SeD_A3404 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chromosome replication initiation inhibitor protein YP_002217042.1 3272677 D 439851 CDS YP_002217043.1 198244238 3273646..3273771 1 NC_011205.1 identified by glimmer; hypothetical protein 3273771 439851003489 SeD_A3405 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217043.1 3273646 D 439851 CDS YP_002217044.1 198244491 complement(3273836..3274582) 1 NC_011205.1 identified by match to protein family HMM PF04402; hypothetical protein 3274582 439851003490 SeD_A3406 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217044.1 3273836 R 439851 CDS YP_002217045.1 198242038 complement(3275511..3276371) 1 NC_011205.1 participates in the regulation of osmotic pressure changes within the cel; mechanosensitive channel MscS 3276371 439851003492 SeD_A3409 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 mechanosensitive channel MscS YP_002217045.1 3275511 R 439851 CDS YP_002217046.1 198243554 complement(3276604..3277683) 1 NC_011205.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 3277683 fbaA 439851003493 fbaA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fructose-bisphosphate aldolase YP_002217046.1 3276604 R 439851 CDS YP_002217047.1 198242923 complement(3277785..3278948) 1 NC_011205.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3278948 pgk 439851003494 pgk Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoglycerate kinase YP_002217047.1 3277785 R 439851 CDS YP_002217048.1 198242863 complement(3278970..3280016) 1 NC_011205.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 3280016 epd 439851003495 epd Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 erythrose 4-phosphate dehydrogenase YP_002217048.1 3278970 R 439851 CDS YP_002217049.1 198246107 3280390..3280815 1 NC_011205.1 identified by match to protein family HMM PF03479; hypothetical protein 3280815 439851003496 SeD_A3413 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217049.1 3280390 D 439851 CDS YP_002217050.1 198245551 3280841..3281419 1 NC_011205.1 signal transduction histidine kinase, LytS 3281419 439851003497 SeD_A3414 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 signal transduction histidine kinase, LytS YP_002217050.1 3280841 D 439851 CDS YP_002217051.1 198245390 3281420..3282127 1 NC_011205.1 identified by match to protein family HMM PF02361; ABC transporter permease 3282127 439851003498 SeD_A3415 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter permease YP_002217051.1 3281420 D 439851 CDS YP_002217052.1 198244366 3282115..3282792 1 NC_011205.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3282792 439851003499 SeD_A3416 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter ATP-binding protein YP_002217052.1 3282115 D 439851 CDS YP_002217053.1 198243625 3282786..3283442 1 NC_011205.1 identified by match to protein family HMM PF00005; cobalt ABC transporter ATPase 3283442 439851003500 SeD_A3417 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cobalt ABC transporter ATPase YP_002217053.1 3282786 D 439851 CDS YP_002217054.1 198243103 complement(3283486..3285477) 1 NC_011205.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 3285477 tktA 439851003501 tktA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transketolase YP_002217054.1 3283486 R 439851 CDS YP_002217055.1 198246071 complement(3286612..3287532) 1 NC_011205.1 catalyzes the formation of putrescine from agmatine; agmatinase 3287532 speB 439851003503 speB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 agmatinase YP_002217055.1 3286612 R 439851 CDS YP_002217056.1 198245706 complement(3287737..3288627) 1 NC_011205.1 identified by match to protein family HMM PF00561; hydrolase or acyltransferase 3288627 439851003504 SeD_A3421 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrolase or acyltransferase YP_002217056.1 3287737 R 439851 CDS YP_002217057.1 198241835 complement(3288886..3289380) 1 NC_011205.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; mannitol dehydrogenase 3289380 439851003505 SeD_A3422 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 mannitol dehydrogenase YP_002217057.1 3288886 R 439851 CDS YP_002217058.1 198243664 complement(3290440..3291456) 1 NC_011205.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; hypothetical protein 3291456 439851003507 SeD_A3425 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217058.1 3290440 R 439851 CDS YP_002217059.1 198244132 complement(3291459..3292931) 1 NC_011205.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125; D-mannonate oxidoreductase 3292931 439851003508 SeD_A3426 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-mannonate oxidoreductase YP_002217059.1 3291459 R 439851 CDS YP_008169835.1 528879903 3293821..3293937 1 NC_011205.1 racemase 3293937 439851003509 SeD_A3427 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 racemase YP_008169835.1 3293821 D 439851 CDS YP_002217060.1 198244855 complement(3294154..3294903) 1 NC_011205.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; Uxu operon transcriptional regulator 3294903 439851003510 SeD_A3428 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Uxu operon transcriptional regulator YP_002217060.1 3294154 R 439851 CDS YP_002217061.1 198245174 complement(3295108..3295839) 1 NC_011205.1 outer membrane lipoprotein 3295839 439851003511 SeD_A3429 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane lipoprotein YP_002217061.1 3295108 R 439851 CDS YP_002217062.1 198244380 complement(3295984..3297882) 1 NC_011205.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 3297882 speA 439851003512 speA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arginine decarboxylase YP_002217062.1 3295984 R 439851 CDS YP_002217063.1 198244885 complement(3297969..3298100) 1 NC_011205.1 hypothetical protein 3298100 439851003513 SeD_A3431 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217063.1 3297969 R 439851 CDS YP_002217064.1 198243413 3298434..3298601 1 NC_011205.1 hypothetical protein 3298601 439851003514 SeD_A3432 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217064.1 3298434 D 439851 CDS YP_002217065.1 198243939 3298750..3299904 1 NC_011205.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3299904 metK 439851003515 metK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 S-adenosylmethionine synthetase YP_002217065.1 3298750 D 439851 CDS YP_002217066.1 198243565 3300397..3301791 1 NC_011205.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; galactose-proton symporter 3301791 galP 439851003516 galP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 galactose-proton symporter YP_002217066.1 3300397 D 439851 CDS YP_002217067.1 198241978 3301870..3302367 1 NC_011205.1 identified by match to protein family HMM PF03926; hypothetical protein 3302367 sprT 439851003517 sprT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217067.1 3301870 D 439851 CDS YP_002217068.1 198242452 3302463..3303170 1 NC_011205.1 identified by match to protein family HMM PF04231; endonuclease I 3303170 endA 439851003518 endA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 endonuclease I YP_002217068.1 3302463 D 439851 CDS YP_002217069.1 198245476 3303199..3303978 1 NC_011205.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 3303978 439851003519 SeD_A3437 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 16S ribosomal RNA methyltransferase RsmE YP_002217069.1 3303199 D 439851 CDS YP_002217070.1 198246039 3303998..3304945 1 NC_011205.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3304945 gshB 439851003520 gshB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione synthetase YP_002217070.1 3303998 D 439851 CDS YP_002217071.1 198244528 3305161..3305724 1 NC_011205.1 identified by match to protein family HMM PF02622; hypothetical protein 3305724 439851003521 SeD_A3439 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217071.1 3305161 D 439851 CDS YP_002217072.1 198242309 3305724..3306140 1 NC_011205.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3306140 439851003522 SeD_A3440 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Holliday junction resolvase-like protein YP_002217072.1 3305724 D 439851 CDS YP_002217073.1 198241988 complement(3306187..3306873) 1 NC_011205.1 identified by match to protein family HMM PF09339; regulatory protein IclR 3306873 439851003523 SeD_A3441 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 regulatory protein IclR YP_002217073.1 3306187 R 439851 CDS YP_002217074.1 198245091 complement(3307006..3307986) 1 NC_011205.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein PilT 3307986 439851003524 SeD_A3442 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 twitching motility protein PilT YP_002217074.1 3307006 R 439851 CDS YP_002217075.1 198244385 3308004..3308708 1 NC_011205.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; pyridoxal phosphate enzyme, YggS family 3308708 439851003525 SeD_A3443 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pyridoxal phosphate enzyme, YggS family YP_002217075.1 3308004 D 439851 CDS YP_002217076.1 198244883 3308727..3309293 1 NC_011205.1 identified by match to protein family HMM PF02325; hypothetical protein 3309293 439851003526 SeD_A3444 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217076.1 3308727 D 439851 CDS YP_002217077.1 198244387 3309290..3309580 1 NC_011205.1 identified by match to protein family HMM PF02594; match to protein family HMM TIGR00251; hypothetical protein 3309580 439851003527 SeD_A3445 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217077.1 3309290 D 439851 CDS YP_002217078.1 198243603 3309588..3310181 1 NC_011205.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 3310181 rdgB 439851003528 rdgB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 deoxyribonucleotide triphosphate pyrophosphatase YP_002217078.1 3309588 D 439851 CDS YP_002217079.1 198243140 3310174..3311310 1 NC_011205.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3311310 439851003529 SeD_A3447 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 coproporphyrinogen III oxidase YP_002217079.1 3310174 D 439851 CDS YP_002217080.1 198242326 complement(3311402..3312409) 1 NC_011205.1 identified by match to protein family HMM PF06717; hypothetical protein 3312409 439851003530 SeD_A3448 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217080.1 3311402 R 439851 CDS YP_002217081.1 198241840 complement(3312542..3313588) 1 NC_011205.1 catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; L-asparaginase II 3313588 ansB 439851003531 ansB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-asparaginase II YP_002217081.1 3312542 R 439851 CDS YP_002217082.1 198243516 complement(3313777..3314496) 1 NC_011205.1 hypothetical protein 3314496 439851003532 SeD_A3450 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217082.1 3313777 R 439851 CDS YP_002217083.1 198242884 complement(3314546..3314872) 1 NC_011205.1 identified by match to protein family HMM PF04320; hypothetical protein 3314872 439851003533 SeD_A3451 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217083.1 3314546 R 439851 CDS YP_002217084.1 198244485 complement(3314872..3315639) 1 NC_011205.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 3315639 trmB 439851003534 trmB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA (guanine-N(7)-)-methyltransferase YP_002217084.1 3314872 R 439851 CDS YP_002217085.1 198243866 3315746..3316798 1 NC_011205.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; adenine DNA glycosylase 3316798 mutY 439851003535 mutY Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 adenine DNA glycosylase YP_002217085.1 3315746 D 439851 CDS YP_002217086.1 198245453 3316826..3317101 1 NC_011205.1 identified by match to protein family HMM PF04362; hypothetical protein 3317101 439851003536 SeD_A3454 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217086.1 3316826 D 439851 CDS YP_002217087.1 198244824 3317214..3318299 1 NC_011205.1 Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase C 3318299 mltC 439851003537 mltC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 murein transglycosylase C YP_002217087.1 3317214 D 439851 CDS YP_002217088.1 198241938 complement(3318364..3318489) 1 NC_011205.1 identified by glimmer; hypothetical protein 3318489 439851003538 SeD_A3456 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217088.1 3318364 R 439851 CDS YP_002217089.1 198245802 3318516..3319772 1 NC_011205.1 identified by match to protein family HMM PF03825; match to protein family HMM PF07690; match to protein family HMM TIGR00889; nucleoside permease NupG 3319772 nupG 439851003539 nupG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nucleoside permease NupG YP_002217089.1 3318516 D 439851 CDS YP_002217090.1 198244175 complement(3319834..3321969) 1 NC_011205.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; ornithine decarboxylase 3321969 439851003540 SeD_A3458 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ornithine decarboxylase YP_002217090.1 3319834 R 439851 CDS YP_002217091.1 198243575 3322242..3322355 1 NC_011205.1 identified by glimmer; hypothetical protein 3322355 439851003541 SeD_A3459 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217091.1 3322242 D 439851 CDS YP_002217092.1 198242001 3322394..3323101 1 NC_011205.1 identified by match to protein family HMM PF04474; hypothetical protein 3323101 439851003542 SeD_A3460 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217092.1 3322394 D 439851 CDS YP_002217093.1 198242394 complement(3323886..3325211) 1 NC_011205.1 identified by match to protein family HMM PF02550; 4-hydroxybutyrate CoA-transferase 3325211 439851003544 SeD_A3462 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-hydroxybutyrate CoA-transferase YP_002217093.1 3323886 R 439851 CDS YP_002217094.1 198243315 complement(3325236..3325763) 1 NC_011205.1 identified by match to protein family HMM PF01575; hypothetical protein 3325763 439851003545 SeD_A3463 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217094.1 3325236 R 439851 CDS YP_002217095.1 198243658 complement(3325787..3326629) 1 NC_011205.1 identified by match to protein family HMM PF03328; HpcH/HpaI aldolase/citrate lyase family protein 3326629 439851003546 SeD_A3464 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 HpcH/HpaI aldolase/citrate lyase family protein YP_002217095.1 3325787 R 439851 CDS YP_002217096.1 198245046 3326721..3327599 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; hypothetical protein 3327599 439851003547 SeD_A3465 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217096.1 3326721 D 439851 CDS YP_002217097.1 198243418 complement(3327647..3329386) 1 NC_011205.1 identified by match to protein family HMM PF00884; arylsulfatase 3329386 439851003548 SeD_A3466 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arylsulfatase YP_002217097.1 3327647 R 439851 CDS YP_002217098.1 198244064 complement(3329455..3330639) 1 NC_011205.1 identified by match to protein family HMM PF04055; arylsulfatase 3330639 439851003549 SeD_A3467 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arylsulfatase YP_002217098.1 3329455 R 439851 CDS YP_002217099.1 198244696 3331088..3331834 1 NC_011205.1 identified by match to protein family HMM PF00196; LysR family transcriptional regulator 3331834 439851003550 SeD_A3468 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR family transcriptional regulator YP_002217099.1 3331088 D 439851 CDS YP_002217100.1 198242583 complement(3331939..3332496) 1 NC_011205.1 hypothetical protein 3332496 439851003551 SeD_A3469 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217100.1 3331939 R 439851 CDS YP_002217101.1 198245135 complement(3332474..3333973) 1 NC_011205.1 identified by match to protein family HMM PF00324; amino acid permease 3333973 439851003552 SeD_A3470 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 amino acid permease YP_002217101.1 3332474 R 439851 CDS YP_002217102.1 198245995 complement(3333966..3334109) 1 NC_011205.1 identified by glimmer; hypothetical protein 3334109 439851003553 SeD_A3471 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217102.1 3333966 R 439851 CDS YP_002217103.1 198245486 complement(3334182..3334556) 1 NC_011205.1 identified by match to protein family HMM PF05899; hypothetical protein 3334556 439851003554 SeD_A3472 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217103.1 3334182 R 439851 CDS YP_002217104.1 198245037 complement(3334571..3335872) 1 NC_011205.1 identified by match to protein family HMM PF01266; tyramine oxidase 3335872 439851003555 SeD_A3473 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tyramine oxidase YP_002217104.1 3334571 R 439851 CDS YP_002217105.1 198244557 3336034..3337518 1 NC_011205.1 identified by match to protein family HMM PF00171; phenylacetaldehyde dehydrogenase 3337518 439851003556 SeD_A3474 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phenylacetaldehyde dehydrogenase YP_002217105.1 3336034 D 439851 CDS YP_002217106.1 198241771 complement(3337654..3337863) 1 NC_011205.1 inhibitor of RssB activity in response to DNA damage; blocks degradation of stationary phase sigma factor RpoS; DNA replication/recombination/repair protein 3337863 iraD 439851003557 iraD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA replication/recombination/repair protein YP_002217106.1 3337654 R 439851 CDS YP_002217107.1 198243473 complement(3338034..3338519) 1 NC_011205.1 identified by match to protein family HMM PF05638; hypothetical protein 3338519 439851003558 SeD_A3476 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217107.1 3338034 R 439851 CDS YP_002217108.1 198245487 complement(3339242..3340165) 1 NC_011205.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 3340165 439851003559 SeD_A3477 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 polysaccharide deacetylase YP_002217108.1 3339242 R 439851 CDS YP_002217109.1 198242511 complement(3340204..3341082) 1 NC_011205.1 identified by match to protein family HMM PF00795; amidohydrolase 3341082 439851003560 SeD_A3478 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 amidohydrolase YP_002217109.1 3340204 R 439851 CDS YP_002217110.1 198243543 complement(3341478..3342782) 1 NC_011205.1 identified by match to protein family HMM PF07690; hexuronate transporter 3342782 exuT 439851003561 exuT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hexuronate transporter YP_002217110.1 3341478 R 439851 CDS YP_002217111.1 198245009 3343187..3344371 1 NC_011205.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 3344371 uxuA 439851003562 uxuA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 mannonate dehydratase YP_002217111.1 3343187 D 439851 CDS YP_002217112.1 198243872 3344482..3345954 1 NC_011205.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125; D-mannonate oxidoreductase 3345954 439851003563 SeD_A3481 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-mannonate oxidoreductase YP_002217112.1 3344482 D 439851 CDS YP_002217113.1 198243637 3345966..3347378 1 NC_011205.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 3347378 uxaC 439851003564 uxaC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucuronate isomerase YP_002217113.1 3345966 D 439851 CDS YP_002217114.1 198244019 complement(3347679..3348737) 1 NC_011205.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 3348737 439851003565 SeD_A3483 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methyl-accepting chemotaxis protein YP_002217114.1 3347679 R 439851 CDS YP_002217115.1 198245129 complement(3348799..3348915) 1 NC_011205.1 identified by glimmer; hypothetical protein 3348915 439851003566 SeD_A3484 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217115.1 3348799 R 439851 CDS YP_002217116.1 198245780 3349099..3349296 1 NC_011205.1 identified by glimmer; hypothetical protein 3349296 439851003567 SeD_A3485 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217116.1 3349099 D 439851 CDS YP_002217117.1 198242209 complement(3349407..3351263) 1 NC_011205.1 catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase 3351263 439851003568 SeD_A3486 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase YP_002217117.1 3349407 R 439851 CDS YP_002217118.1 198242820 3351490..3352356 1 NC_011205.1 YghU; B2989; one of eight glutathione transferase proteins from E. coli; glutathione S-transferase YghU 3352356 439851003569 SeD_A3487 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione S-transferase YghU YP_002217118.1 3351490 D 439851 CDS YP_002217119.1 198245857 complement(3352424..3353125) 1 NC_011205.1 molybdate ABC transporter periplasmic molybdate-binding protein 3353125 439851003570 SeD_A3488 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molybdate ABC transporter periplasmic molybdate-binding protein YP_002217119.1 3352424 R 439851 CDS YP_002217120.1 198242589 complement(3354253..3354501) 1 NC_011205.1 identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase 2 accessory protein HypG 3354501 hypC 439851003572 hypC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase 2 accessory protein HypG YP_002217120.1 3354253 R 439851 CDS YP_002217121.1 198243433 complement(3354529..3354870) 1 NC_011205.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein HybF 3354870 hypA 439851003573 hypA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase nickel incorporation protein HybF YP_002217121.1 3354529 R 439851 CDS YP_002217122.1 198243896 complement(3354863..3355351) 1 NC_011205.1 hydrogenase 2-specific chaperone 3355351 439851003574 SeD_A3493 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase 2-specific chaperone YP_002217122.1 3354863 R 439851 CDS YP_002217123.1 198243906 complement(3355344..3355838) 1 NC_011205.1 protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); hydrogenase 2 maturation endopeptidase 3355838 hybD 439851003575 hybD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase 2 maturation endopeptidase YP_002217123.1 3355344 R 439851 CDS YP_002217124.1 198244643 complement(3355838..3357541) 1 NC_011205.1 involved in hydrogen uptake; hydrogenase 2 large subunit 3357541 hybC 439851003576 hybC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase 2 large subunit YP_002217124.1 3355838 R 439851 CDS YP_002217125.1 198245490 complement(3357538..3358716) 1 NC_011205.1 HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits; hydrogenase 2 b cytochrome subunit 3358716 hybB 439851003577 hybB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase 2 b cytochrome subunit YP_002217125.1 3357538 R 439851 CDS YP_002217126.1 198245843 complement(3358706..3359692) 1 NC_011205.1 Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 protein HybA 3359692 hybA 439851003578 hybA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase 2 protein HybA YP_002217126.1 3358706 R 439851 CDS YP_002217127.1 198244463 complement(3359695..3360813) 1 NC_011205.1 involved in hydrogen uptake; hydrogenase 2 small subunit 3360813 hybO 439851003579 hybO Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrogenase 2 small subunit YP_002217127.1 3359695 R 439851 CDS YP_002217128.1 198245096 complement(3360821..3361006) 1 NC_011205.1 hypothetical protein 3361006 439851003580 SeD_A3499 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217128.1 3360821 R 439851 CDS YP_002217129.1 198245442 complement(3361003..3361290) 1 NC_011205.1 hypothetical protein 3361290 439851003581 SeD_A3500 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217129.1 3361003 R 439851 CDS YP_002217130.1 198245953 complement(3361375..3363018) 1 NC_011205.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis sensory transducer 3363018 439851003582 SeD_A3501 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methyl-accepting chemotaxis sensory transducer YP_002217130.1 3361375 R 439851 CDS YP_002217131.1 198242957 complement(3363325..3363819) 1 NC_011205.1 identified by match to protein family HMM PF03350; match to protein family HMM TIGR00645; hypothetical protein 3363819 439851003583 SeD_A3502 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217131.1 3363325 R 439851 CDS YP_002217132.1 198244678 complement(3364099..3364602) 1 NC_011205.1 hypothetical protein 3364602 439851003584 SeD_A3503 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217132.1 3364099 R 439851 CDS YP_002217133.1 198243494 3364706..3365116 1 NC_011205.1 hypothetical protein 3365116 439851003585 SeD_A3504 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217133.1 3364706 D 439851 CDS YP_002217134.1 198244013 3365103..3365507 1 NC_011205.1 hypothetical protein 3365507 439851003586 SeD_A3505 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217134.1 3365103 D 439851 CDS YP_002217135.1 198245615 3365631..3366515 1 NC_011205.1 identified by match to protein family HMM PF00106; oxidoreductase 3366515 439851003587 SeD_A3506 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxidoreductase YP_002217135.1 3365631 D 439851 CDS YP_002217136.1 198243033 complement(3366628..3367053) 1 NC_011205.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD 3367053 exbD 439851003588 exbD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 biopolymer transport protein ExbD YP_002217136.1 3366628 R 439851 CDS YP_002217137.1 198244982 complement(3367060..3367794) 1 NC_011205.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbB 3367794 exbB 439851003589 exbB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 biopolymer transport protein ExbB YP_002217137.1 3367060 R 439851 CDS YP_002217138.1 198244328 complement(3367787..3367924) 1 NC_011205.1 hypothetical protein 3367924 439851003590 SeD_A3509 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217138.1 3367787 R 439851 CDS YP_002217139.1 198243694 3368046..3369233 1 NC_011205.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 3369233 metC 439851003591 metC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cystathionine beta-lyase YP_002217139.1 3368046 D 439851 CDS YP_002217140.1 198242789 3369373..3370032 1 NC_011205.1 identified by match to protein family HMM PF09335; hypothetical protein 3370032 439851003592 SeD_A3511 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217140.1 3369373 D 439851 CDS YP_002217141.1 198245733 complement(3370985..3371101) 1 NC_011205.1 identified by glimmer; hypothetical protein 3371101 439851003594 SeD_A3513 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217141.1 3370985 R 439851 CDS YP_002217142.1 198243581 3371188..3372351 1 NC_011205.1 identified by match to protein family HMM PF00465; alcohol dehydrogenase 3372351 439851003595 SeD_A3514 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 alcohol dehydrogenase YP_002217142.1 3371188 D 439851 CDS YP_002217143.1 198242933 3372457..3373284 1 NC_011205.1 methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; 2,5-diketo-D-gluconate reductase A 3373284 dkgA 439851003596 dkgA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2,5-diketo-D-gluconate reductase A YP_002217143.1 3372457 D 439851 CDS YP_002217144.1 198241941 3374980..3375435 1 NC_011205.1 identified by match to protein family HMM PF01230; hypothetical protein 3375435 439851003598 SeD_A3517 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217144.1 3374980 D 439851 CDS YP_002217145.1 198245845 complement(3375593..3375787) 1 NC_011205.1 identified by glimmer; hypothetical protein 3375787 439851003599 SeD_A3518 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217145.1 3375593 R 439851 CDS YP_002217146.1 198245386 complement(3375990..3378161) 1 NC_011205.1 identified by match to protein family HMM PF04055; match to protein family HMM PF08497; hypothetical protein 3378161 439851003600 SeD_A3519 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217146.1 3375990 R 439851 CDS YP_002217147.1 198244579 3378649..3379632 1 NC_011205.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; trap dicarboxylate transporter DctP subunit 3379632 439851003601 SeD_A3520 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 trap dicarboxylate transporter DctP subunit YP_002217147.1 3378649 D 439851 CDS YP_002217148.1 198244412 3379674..3380156 1 NC_011205.1 identified by match to protein family HMM PF04290; trap-type c4-dicarboxylate transport system, small permease 3380156 439851003602 SeD_A3521 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 trap-type c4-dicarboxylate transport system, small permease YP_002217148.1 3379674 D 439851 CDS YP_002217149.1 198244888 3380167..3381474 1 NC_011205.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; hypothetical protein 3381474 439851003603 SeD_A3522 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217149.1 3380167 D 439851 CDS YP_002217150.1 198243162 complement(3381519..3382931) 1 NC_011205.1 identified by match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; repressor protein for FtsI 3382931 439851003604 SeD_A3523 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 repressor protein for FtsI YP_002217150.1 3381519 R 439851 CDS YP_002217151.1 198243407 complement(3383005..3383742) 1 NC_011205.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase 3383742 439851003605 SeD_A3524 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_002217151.1 3383005 R 439851 CDS YP_002217152.1 198242763 complement(3383999..3386257) 1 NC_011205.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 3386257 parC 439851003606 parC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA topoisomerase IV subunit A YP_002217152.1 3383999 R 439851 CDS YP_002217153.1 198245819 complement(3386368..3387234) 1 NC_011205.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445; transcription activator, effector binding 3387234 439851003607 SeD_A3526 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcription activator, effector binding YP_002217153.1 3386368 R 439851 CDS YP_002217154.1 198245150 complement(3387306..3387698) 1 NC_011205.1 identified by match to protein family HMM PF04076; match to protein family HMM TIGR00156; hypothetical protein 3387698 439851003608 SeD_A3527 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217154.1 3387306 R 439851 CDS YP_002217155.1 198242500 3387850..3388509 1 NC_011205.1 response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; DNA-binding transcriptional regulator QseB 3388509 439851003609 SeD_A3528 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator QseB YP_002217155.1 3387850 D 439851 CDS YP_002217156.1 198242013 3388506..3389855 1 NC_011205.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor protein QseC 3389855 439851003610 SeD_A3529 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sensor protein QseC YP_002217156.1 3388506 D 439851 CDS YP_002217157.1 198244522 3389849..3389965 1 NC_011205.1 identified by glimmer; hypothetical protein 3389965 439851003611 SeD_A3530 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217157.1 3389849 D 439851 CDS YP_002217158.1 198243237 3389962..3390543 1 NC_011205.1 identified by match to protein family HMM PF02525; NADPH-specific quinone oxidoreductase 3390543 439851003612 SeD_A3531 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NADPH-specific quinone oxidoreductase YP_002217158.1 3389962 D 439851 CDS YP_002217159.1 198245544 3390575..3390889 1 NC_011205.1 identified by match to protein family HMM PF03992; hypothetical protein 3390889 439851003613 SeD_A3532 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217159.1 3390575 D 439851 CDS YP_002217160.1 198244894 complement(3390894..3391007) 1 NC_011205.1 identified by glimmer; hypothetical protein 3391007 439851003614 SeD_A3533 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217160.1 3390894 R 439851 CDS YP_002217161.1 198243780 complement(3391014..3392906) 1 NC_011205.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 3392906 parE 439851003615 parE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA topoisomerase IV subunit B YP_002217161.1 3391014 R 439851 CDS YP_002217162.1 198243301 complement(3392934..3393515) 1 NC_011205.1 Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YqiA 3393515 yqiA 439851003616 yqiA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 esterase YqiA YP_002217162.1 3392934 R 439851 CDS YP_002217163.1 198242752 complement(3393515..3394342) 1 NC_011205.1 identified by match to protein family HMM PF00149; match to protein family HMM PF08413; cyclic 3',5'-adenosine monophosphate phosphodiesterase 3394342 icc 439851003617 icc Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cyclic 3',5'-adenosine monophosphate phosphodiesterase YP_002217163.1 3393515 R 439851 CDS YP_002217164.1 198242274 complement(3394367..3394789) 1 NC_011205.1 identified by match to protein family HMM PF06853; hypothetical protein 3394789 439851003618 SeD_A3537 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217164.1 3394367 R 439851 CDS YP_002217165.1 198243748 complement(3394786..3395418) 1 NC_011205.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose pyrophosphatase 3395418 nudF 439851003619 nudF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ADP-ribose pyrophosphatase YP_002217165.1 3394786 R 439851 CDS YP_002217166.1 198243257 3395625..3397094 1 NC_011205.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3397094 tolC 439851003620 tolC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane channel protein YP_002217166.1 3395625 D 439851 CDS YP_002217167.1 198242750 3397307..3397978 1 NC_011205.1 hypothetical protein 3397978 439851003621 SeD_A3540 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217167.1 3397307 D 439851 CDS YP_002217168.1 198243687 3397984..3399147 1 NC_011205.1 identified by match to protein family HMM PF03738; glutathionylspermidine synthase 3399147 439851003622 SeD_A3541 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathionylspermidine synthase YP_002217168.1 3397984 D 439851 CDS YP_002217169.1 198243154 complement(3399209..3399997) 1 NC_011205.1 seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; hypothetical protein 3399997 439851003623 SeD_A3542 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217169.1 3399209 R 439851 CDS YP_002217170.1 198243716 3400138..3400911 1 NC_011205.1 identified by match to protein family HMM PF02535; zinc transporter ZupT 3400911 439851003624 SeD_A3543 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 zinc transporter ZupT YP_002217170.1 3400138 D 439851 CDS YP_002217171.1 198243034 complement(3400978..3401154) 1 NC_011205.1 hypothetical protein 3401154 439851003625 SeD_A3544 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217171.1 3400978 R 439851 CDS YP_002217172.1 198242400 3401554..3403350 1 NC_011205.1 identified by match to protein family HMM PF05935; arylsulfate sulfotransferase 3403350 439851003626 SeD_A3545 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arylsulfate sulfotransferase YP_002217172.1 3401554 D 439851 CDS YP_002217173.1 198241747 3403370..3404041 1 NC_011205.1 identified by match to protein family HMM PF01323; disulfide isomerase 3404041 439851003627 SeD_A3546 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 disulfide isomerase YP_002217173.1 3403370 D 439851 CDS YP_002217174.1 198244537 3404056..3404733 1 NC_011205.1 disulfide oxidoreductase 3404733 439851003628 SeD_A3547 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 disulfide oxidoreductase YP_002217174.1 3404056 D 439851 CDS YP_002217175.1 198246052 complement(3404904..3405557) 1 NC_011205.1 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3405557 ribB 439851003629 ribB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_002217175.1 3404904 R 439851 CDS YP_002217176.1 198243182 3405994..3406290 1 NC_011205.1 identified by match to protein family HMM PF04380; hypothetical protein 3406290 439851003630 SeD_A3550 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217176.1 3405994 D 439851 CDS YP_002217177.1 198244851 complement(3406365..3406574) 1 NC_011205.1 Involved in glycogen synthesis. May be involved in glycogen priming; glycogen synthesis protein GlgS 3406574 439851003631 SeD_A3551 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycogen synthesis protein GlgS YP_002217177.1 3406365 R 439851 CDS YP_002217178.1 198245332 complement(3406671..3406820) 1 NC_011205.1 hypothetical protein 3406820 439851003632 SeD_A3552 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217178.1 3406671 R 439851 CDS YP_002217179.1 198242556 3406832..3407452 1 NC_011205.1 identified by match to protein family HMM PF07290; hypothetical protein 3407452 439851003633 SeD_A3553 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217179.1 3406832 D 439851 CDS YP_002217180.1 198245986 3407471..3409150 1 NC_011205.1 identified by match to protein family HMM PF01145; hypothetical protein 3409150 439851003634 SeD_A3554 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217180.1 3407471 D 439851 CDS YP_002217181.1 198245480 complement(3409609..3411042) 1 NC_011205.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 3411042 439851003636 SeD_A3556 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_002217181.1 3409609 R 439851 CDS YP_002217182.1 198243807 complement(3411090..3413933) 1 NC_011205.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 3413933 glnE 439851003637 glnE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_002217182.1 3411090 R 439851 CDS YP_002217183.1 198243293 complement(3414051..3415352) 1 NC_011205.1 identified by match to protein family HMM PF01928; match to protein family HMM PF05235; adenylate cyclase 3415352 439851003638 SeD_A3558 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 adenylate cyclase YP_002217183.1 3414051 R 439851 CDS YP_002217184.1 198242767 3415594..3416208 1 NC_011205.1 identified by match to protein family HMM PF08239; signal transduction protein 3416208 439851003639 SeD_A3559 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 signal transduction protein YP_002217184.1 3415594 D 439851 CDS YP_002217185.1 198241760 3416271..3417512 1 NC_011205.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3417512 cca 439851003640 cca Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase YP_002217185.1 3416271 D 439851 CDS YP_002217186.1 198245722 complement(3417616..3418437) 1 NC_011205.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 3418437 bacA 439851003641 bacA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 undecaprenyl pyrophosphate phosphatase YP_002217186.1 3417616 R 439851 CDS YP_002217187.1 198245319 complement(3418535..3418894) 1 NC_011205.1 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase 3418894 folB 439851003642 folB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase YP_002217187.1 3418535 R 439851 CDS YP_002217188.1 198244679 3419001..3419612 1 NC_011205.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 3419612 439851003643 SeD_A3563 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycerol-3-phosphate acyltransferase PlsY YP_002217188.1 3419001 D 439851 CDS YP_002217189.1 198243102 complement(3419862..3420875) 1 NC_011205.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 3420875 gcp 439851003644 gcp Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding/iron metalloprotein/AP endonuclease YP_002217189.1 3419862 R 439851 CDS YP_002217190.1 198243486 3421103..3421318 1 NC_011205.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3421318 rpsU 439851003645 rpsU Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S21 YP_002217190.1 3421103 D 439851 CDS YP_002217191.1 198242235 3421553..3423298 1 NC_011205.1 synthesizes RNA primers at the replication forks; DNA primase 3423298 dnaG 439851003646 dnaG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA primase YP_002217191.1 3421553 D 439851 CDS YP_002217192.1 198242489 3423448..3425295 1 NC_011205.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 3425295 rpoD 439851003647 rpoD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RNA polymerase sigma factor RpoD YP_002217192.1 3423448 D 439851 CDS YP_002217193.1 198245603 complement(3425419..3425925) 1 NC_011205.1 identified by match to protein family HMM PF03167; G/U mismatch-specific DNA glycosylase 3425925 439851003648 SeD_A3568 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 G/U mismatch-specific DNA glycosylase YP_002217193.1 3425419 R 439851 CDS YP_002217194.1 198244925 complement(3426206..3426973) 1 NC_011205.1 identified by match to protein family HMM PF04954; match to protein family HMM PF08021; siderophore-interacting protein 3426973 439851003650 SeD_A3570 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 siderophore-interacting protein YP_002217194.1 3426206 R 439851 CDS YP_002217195.1 198243105 3427208..3427852 1 NC_011205.1 identified by match to protein family HMM PF03551; PadR family transcriptional regulator 3427852 439851003651 SeD_A3571 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PadR family transcriptional regulator YP_002217195.1 3427208 D 439851 CDS YP_002217196.1 198243367 complement(3427849..3429417) 1 NC_011205.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein II 3429417 439851003652 SeD_A3572 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methyl-accepting chemotaxis protein II YP_002217196.1 3427849 R 439851 CDS YP_002217197.1 198242077 complement(3429805..3431325) 1 NC_011205.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08447; match to protein family HMM TIGR00229; aerotaxis receptor 3431325 439851003653 SeD_A3573 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aerotaxis receptor YP_002217197.1 3429805 R 439851 CDS YP_002217198.1 198245193 3431337..3431492 1 NC_011205.1 hypothetical protein 3431492 439851003654 SeD_A3574 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217198.1 3431337 D 439851 CDS YP_002217199.1 198245661 3431754..3433133 1 NC_011205.1 catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; putrescine--2-oxoglutarate aminotransferase 3433133 rocD 439851003655 rocD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 putrescine--2-oxoglutarate aminotransferase YP_002217199.1 3431754 D 439851 CDS YP_002217200.1 198244260 3433304..3435322 1 NC_011205.1 identified by match to protein family HMM PF00724; match to protein family HMM PF07992; FAD/FMN-binding/pyridine nucleotide-disulfide oxidoreductase family protein 3435322 439851003656 SeD_A3576 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 FAD/FMN-binding/pyridine nucleotide-disulfide oxidoreductase family protein YP_002217200.1 3433304 D 439851 CDS YP_002217201.1 198244714 complement(3435403..3436539) 1 NC_011205.1 identified by match to protein family HMM PF05175; match to protein family HMM PF08242; methyltransferase family protein 3436539 439851003657 SeD_A3577 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methyltransferase family protein YP_002217201.1 3435403 R 439851 CDS YP_002217202.1 198245364 3436625..3437122 1 NC_011205.1 identified by match to protein family HMM PF01863; hypothetical protein 3437122 439851003658 SeD_A3578 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217202.1 3436625 D 439851 CDS YP_002217203.1 198242619 3437274..3437966 1 NC_011205.1 identified by match to protein family HMM PF02698; SanA protein 3437966 439851003659 SeD_A3579 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 SanA protein YP_002217203.1 3437274 D 439851 CDS YP_002217204.1 198241805 3438055..3439053 1 NC_011205.1 identified by match to protein family HMM PF01408; oxidoreductase YgjR 3439053 439851003660 SeD_A3580 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxidoreductase YgjR YP_002217204.1 3438055 D 439851 CDS YP_002217205.1 198242140 3439324..3440292 1 NC_011205.1 identified by match to protein family HMM PF03741; inner membrane protein alx 3440292 439851003661 SeD_A3581 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein alx YP_002217205.1 3439324 D 439851 CDS YP_002217206.1 198244386 3440547..3441791 1 NC_011205.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3441791 439851003662 SeD_A3582 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 serine/threonine transporter SstT YP_002217206.1 3440547 D 439851 CDS YP_002217207.1 198246123 3442241..3442903 1 NC_011205.1 identified by match to protein family HMM PF09335; hypothetical protein 3442903 439851003663 SeD_A3583 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217207.1 3442241 D 439851 CDS YP_002217208.1 198243394 3442907..3443290 1 NC_011205.1 hypothetical protein 3443290 439851003664 SeD_A3584 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217208.1 3442907 D 439851 CDS YP_002217209.1 198242896 3443435..3443803 1 NC_011205.1 identified by match to protein family HMM PF06476; hypothetical protein 3443803 439851003665 SeD_A3585 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217209.1 3443435 D 439851 CDS YP_002217210.1 198244035 3443845..3444150 1 NC_011205.1 identified by match to protein family HMM PF05957; hypothetical protein 3444150 439851003666 SeD_A3586 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217210.1 3443845 D 439851 CDS YP_002217211.1 198244651 3444153..3444551 1 NC_011205.1 hypothetical protein 3444551 439851003667 SeD_A3587 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217211.1 3444153 D 439851 CDS YP_002217212.1 198245329 3444548..3444847 1 NC_011205.1 hypothetical protein 3444847 439851003668 SeD_A3588 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217212.1 3444548 D 439851 CDS YP_002217213.1 198245936 3445002..3445487 1 NC_011205.1 identified by match to protein family HMM PF07681; inner membrane protein YqjF 3445487 439851003669 SeD_A3589 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YqjF YP_002217213.1 3445002 D 439851 CDS YP_002217214.1 198244373 3446664..3447029 1 NC_011205.1 identified by match to protein family HMM PF05656; hypothetical protein 3447029 439851003672 SeD_A3592 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217214.1 3446664 D 439851 CDS YP_002217215.1 198243891 complement(3447068..3447964) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 3447964 439851003673 SeD_A3593 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR family transcriptional regulator YP_002217215.1 3447068 R 439851 CDS YP_002217216.1 198242959 3448069..3448770 1 NC_011205.1 identified by match to protein family HMM PF02678; pirin 3448770 439851003674 SeD_A3594 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pirin YP_002217216.1 3448069 D 439851 CDS YP_002217217.1 198242301 3448794..3448958 1 NC_011205.1 hypothetical protein 3448958 439851003675 SeD_A3595 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217217.1 3448794 D 439851 CDS YP_002217218.1 198244455 complement(3449071..3450381) 1 NC_011205.1 identified by match to protein family HMM PF06354; inner membrane protein 3450381 439851003676 SeD_A3596 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002217218.1 3449071 R 439851 CDS YP_002217219.1 198243984 complement(3450407..3451738) 1 NC_011205.1 identified by match to protein family HMM TIGR00814; inner membrane transport protein YhaO 3451738 439851003677 SeD_A3597 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane transport protein YhaO YP_002217219.1 3450407 R 439851 CDS YP_002217220.1 198245356 complement(3452053..3453417) 1 NC_011205.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 3453417 439851003678 SeD_A3598 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-serine ammonia-lyase YP_002217220.1 3452053 R 439851 CDS YP_002217221.1 198244882 complement(3453487..3455781) 1 NC_011205.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase 3455781 pflB 439851003679 pflB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate acetyltransferase YP_002217221.1 3453487 R 439851 CDS YP_002217222.1 198242460 complement(3455815..3457023) 1 NC_011205.1 catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; propionate/acetate kinase 3457023 ackA 439851003680 ackA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 propionate/acetate kinase YP_002217222.1 3455815 R 439851 CDS YP_002217223.1 198241983 complement(3457090..3458421) 1 NC_011205.1 involved in the import of threonine and serine in combination with the import of a proton; threonine/serine transporter TdcC 3458421 tdcC 439851003681 tdcC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 threonine/serine transporter TdcC YP_002217223.1 3457090 R 439851 CDS YP_002217224.1 198243504 complement(3458442..3459431) 1 NC_011205.1 catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase 3459431 tdcB 439851003682 tdcB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 threonine dehydratase YP_002217224.1 3458442 R 439851 CDS YP_002217225.1 198242965 complement(3459529..3460467) 1 NC_011205.1 regulates the tdcABCDEFG operon which is involved in amino acid degradation; DNA-binding transcriptional activator TdcA 3460467 439851003683 SeD_A3603 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional activator TdcA YP_002217225.1 3459529 R 439851 CDS YP_002217226.1 198241851 complement(3461008..3461238) 1 NC_011205.1 hypothetical protein 3461238 439851003684 SeD_A3604 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217226.1 3461008 R 439851 CDS YP_002217227.1 198246243 complement(3462937..3463827) 1 NC_011205.1 catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase 3463827 garR 439851003687 garR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tartronate semialdehyde reductase YP_002217227.1 3462937 R 439851 CDS YP_002217228.1 198242341 complement(3463853..3464623) 1 NC_011205.1 cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; alpha-dehydro-beta-deoxy-D-glucarate aldolase 3464623 garL 439851003688 garL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 alpha-dehydro-beta-deoxy-D-glucarate aldolase YP_002217228.1 3463853 R 439851 CDS YP_002217229.1 198245081 3464806..3464925 1 NC_011205.1 identified by glimmer; hypothetical protein 3464925 439851003689 SeD_A3609 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217229.1 3464806 D 439851 CDS YP_002217230.1 198244717 3466844..3467836 1 NC_011205.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase 3467836 gatY 439851003691 gatY Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tagatose-bisphosphate aldolase YP_002217230.1 3466844 D 439851 CDS YP_002217231.1 198244076 3467956..3469227 1 NC_011205.1 class II, non-catalytic subunit; identified by match to protein family HMM PF08013; match to protein family HMM TIGR02810; D-tagatose-bisphosphate aldolase 3469227 439851003692 SeD_A3612 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-tagatose-bisphosphate aldolase YP_002217231.1 3467956 D 439851 CDS YP_002217232.1 198243741 3469242..3469706 1 NC_011205.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIA 3469706 439851003693 SeD_A3613 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system galactitol-specific transporter subunit IIA YP_002217232.1 3469242 D 439851 CDS YP_002217233.1 198243084 3469737..3470021 1 NC_011205.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIB 3470021 439851003694 SeD_A3614 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system galactitol-specific transporter subunit IIB YP_002217233.1 3469737 D 439851 CDS YP_002217234.1 198242098 3470025..3471398 1 NC_011205.1 identified by match to protein family HMM PF03611; match to protein family HMM TIGR00827; PTS system galactitol-specific transporter subunit IIC 3471398 439851003695 SeD_A3615 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system galactitol-specific transporter subunit IIC YP_002217234.1 3470025 D 439851 CDS YP_002217235.1 198242780 3471442..3472485 1 NC_011205.1 Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; galactitol-1-phosphate dehydrogenase 3472485 439851003696 SeD_A3616 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 galactitol-1-phosphate dehydrogenase YP_002217235.1 3471442 D 439851 CDS YP_002217236.1 198244861 3472596..3473369 1 NC_011205.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; galactitol utilization operon repressor 3473369 439851003697 SeD_A3617 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 galactitol utilization operon repressor YP_002217236.1 3472596 D 439851 CDS YP_002217237.1 198244779 complement(3473527..3474390) 1 NC_011205.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein 3474390 439851003698 SeD_A3618 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217237.1 3473527 R 439851 CDS YP_002217238.1 198245258 3474454..3476496 1 NC_011205.1 identified by match to protein family HMM PF04348; LppC family protein 3476496 439851003699 SeD_A3619 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LppC family protein YP_002217238.1 3474454 D 439851 CDS YP_002217239.1 198245750 3476454..3476849 1 NC_011205.1 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 3476849 439851003700 SeD_A3620 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217239.1 3476454 D 439851 CDS YP_002217240.1 198242351 3476871..3477461 1 NC_011205.1 Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; DnaA initiator-associating protein DiaA 3477461 diaA 439851003701 diaA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DnaA initiator-associating protein DiaA YP_002217240.1 3476871 D 439851 CDS YP_002217241.1 198245684 3477471..3478046 1 NC_011205.1 identified by match to protein family HMM PF04972; hypothetical protein 3478046 439851003702 SeD_A3622 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217241.1 3477471 D 439851 CDS YP_002217242.1 198243927 complement(3478113..3478748) 1 NC_011205.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993; NAD dependent epimerase/dehydratase family protein 3478748 439851003703 SeD_A3623 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NAD dependent epimerase/dehydratase family protein YP_002217242.1 3478113 R 439851 CDS YP_002217243.1 198243791 3478879..3479397 1 NC_011205.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; intracellular peptidase, PfpI family 3479397 439851003704 SeD_A3624 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 intracellular peptidase, PfpI family YP_002217243.1 3478879 D 439851 CDS YP_002217244.1 198242081 complement(3479377..3479820) 1 NC_011205.1 hypothetical protein 3479820 439851003705 SeD_A3626 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217244.1 3479377 R 439851 CDS YP_002217245.1 198244348 3479813..3480175 1 NC_011205.1 identified by match to protein family HMM PF01541; GIY-YIG nuclease superfamily protein 3480175 439851003706 SeD_A3625 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GIY-YIG nuclease superfamily protein YP_002217245.1 3479813 D 439851 CDS YP_002217246.1 198241909 complement(3480162..3480665) 1 NC_011205.1 identified by match to protein family HMM PF00583; acetyltransferase, GNAT family 3480665 439851003707 SeD_A3627 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetyltransferase, GNAT family YP_002217246.1 3480162 R 439851 CDS YP_002217247.1 198244976 complement(3480659..3481183) 1 NC_011205.1 identified by match to protein family HMM PF02036; sterol-binding protein 3481183 439851003708 SeD_A3628 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sterol-binding protein YP_002217247.1 3480659 R 439851 CDS YP_002217248.1 198245611 3481400..3482395 1 NC_011205.1 identified by match to protein family HMM PF01136; peptidase, U32 family 3482395 439851003709 SeD_A3629 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidase, U32 family YP_002217248.1 3481400 D 439851 CDS YP_002217249.1 198246205 3482404..3483282 1 NC_011205.1 identified by match to protein family HMM PF01136; peptidase, U32 family 3483282 439851003710 SeD_A3630 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidase, U32 family YP_002217249.1 3482404 D 439851 CDS YP_002217250.1 198245118 3483460..3484467 1 NC_011205.1 identified by match to protein family HMM PF00296; hypothetical protein 3484467 439851003711 SeD_A3631 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217250.1 3483460 D 439851 CDS YP_002217251.1 198245601 complement(3484445..3485164) 1 NC_011205.1 identified by match to protein family HMM PF06104; 2-dehydro-3-deoxyphosphooctonate aldolase 3485164 439851003712 SeD_A3632 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-dehydro-3-deoxyphosphooctonate aldolase YP_002217251.1 3484445 R 439851 CDS YP_002217252.1 198243541 3485323..3485853 1 NC_011205.1 hypothetical protein 3485853 439851003713 SeD_A3633 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217252.1 3485323 D 439851 CDS YP_002217253.1 198241914 complement(3485914..3487158) 1 NC_011205.1 tryptophan transporter of high affinity; tryptophan permease 3487158 mtr 439851003714 mtr Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tryptophan permease YP_002217253.1 3485914 R 439851 CDS YP_002217254.1 198242882 complement(3487312..3489201) 1 NC_011205.1 participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; ATP-dependent RNA helicase DeaD 3489201 deaD 439851003715 deaD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent RNA helicase DeaD YP_002217254.1 3487312 R 439851 CDS YP_002217255.1 198242195 complement(3489380..3490264) 1 NC_011205.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 3490264 nlpI 439851003716 nlpI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein NlpI YP_002217255.1 3489380 R 439851 CDS YP_002217256.1 198244392 complement(3492751..3493020) 1 NC_011205.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 3493020 rpsO 439851003719 rpsO Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S15 YP_002217256.1 3492751 R 439851 CDS YP_002217257.1 198243636 complement(3493171..3494115) 1 NC_011205.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 3494115 truB 439851003720 truB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA pseudouridine synthase B YP_002217257.1 3493171 R 439851 CDS YP_002217258.1 198243121 complement(3494115..3494516) 1 NC_011205.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 3494516 rbfA 439851003721 rbfA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribosome-binding factor A YP_002217258.1 3494115 R 439851 CDS YP_002217259.1 198242350 complement(3494737..3497415) 1 NC_011205.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 3497415 infB 439851003722 infB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 translation initiation factor IF-2 YP_002217259.1 3494737 R 439851 CDS YP_002217260.1 198243925 complement(3497440..3498942) 1 NC_011205.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 3498942 nusA 439851003723 nusA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcription elongation factor NusA YP_002217260.1 3497440 R 439851 CDS YP_002217261.1 198245424 complement(3498970..3499422) 1 NC_011205.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 3499422 439851003724 SeD_A3645 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217261.1 3498970 R 439851 CDS YP_002217262.1 198242639 3500050..3501393 1 NC_011205.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 3501393 argG 439851003726 argG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 argininosuccinate synthase YP_002217262.1 3500050 D 439851 CDS YP_002217263.1 198244406 3501551..3502510 1 NC_011205.1 hypothetical protein 3502510 439851003727 SeD_A3648 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217263.1 3501551 D 439851 CDS YP_002217264.1 198245348 complement(3502695..3503027) 1 NC_011205.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 3503027 secG 439851003729 secG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 preprotein translocase subunit SecG YP_002217264.1 3502695 R 439851 CDS YP_002217265.1 198245673 complement(3503250..3504587) 1 NC_011205.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 3504587 glmM 439851003730 glmM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoglucosamine mutase YP_002217265.1 3503250 R 439851 CDS YP_002217266.1 198246032 complement(3504580..3505428) 1 NC_011205.1 catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate; dihydropteroate synthase 3505428 folP 439851003731 folP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dihydropteroate synthase YP_002217266.1 3504580 R 439851 CDS YP_002217267.1 198241741 3505381..3505509 1 NC_011205.1 identified by glimmer; hypothetical protein 3505509 439851003732 SeD_A3652 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217267.1 3505381 D 439851 CDS YP_002217268.1 198242374 complement(3505533..3507476) 1 NC_011205.1 inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; ATP-dependent metalloprotease 3507476 hflB 439851003733 hflB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent metalloprotease YP_002217268.1 3505533 R 439851 CDS YP_002217269.1 198244059 complement(3507571..3508197) 1 NC_011205.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase 3508197 rrmJ 439851003734 rrmJ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 23S rRNA methyltransferase YP_002217269.1 3507571 R 439851 CDS YP_002217270.1 198244680 3508285..3508617 1 NC_011205.1 RNA binding protein found associated to pre-50S subunit of the ribosome; role in ribosome assembly; necessary for optimal growth but not cell viability; RNA-binding protein YhbY 3508617 439851003735 SeD_A3656 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RNA-binding protein YhbY YP_002217270.1 3508285 D 439851 CDS YP_002217271.1 198244973 complement(3508773..3509249) 1 NC_011205.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 3509249 greA 439851003736 greA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcription elongation factor GreA YP_002217271.1 3508773 R 439851 CDS YP_002217272.1 198245882 3509497..3510930 1 NC_011205.1 penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase/endopeptidase 3510930 dacB 439851003737 dacB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-alanyl-D-alanine carboxypeptidase/endopeptidase YP_002217272.1 3509497 D 439851 CDS YP_002217273.1 198243938 3510939..3511064 1 NC_011205.1 identified by glimmer; hypothetical protein 3511064 439851003738 SeD_A3659 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217273.1 3510939 D 439851 CDS YP_002217274.1 198243009 complement(3511061..3512233) 1 NC_011205.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 3512233 obgE 439851003739 obgE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GTPase ObgE YP_002217274.1 3511061 R 439851 CDS YP_002217275.1 198245399 complement(3513334..3513591) 1 NC_011205.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 3513591 rpmA 439851003741 rpmA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L27 YP_002217275.1 3513334 R 439851 CDS YP_002217276.1 198241919 3514039..3515151 1 NC_011205.1 identified by match to protein family HMM PF00348; octaprenyl diphosphate synthase 3515151 ispB 439851003743 ispB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 octaprenyl diphosphate synthase YP_002217276.1 3514039 D 439851 CDS YP_002217277.1 198242831 3515383..3515670 1 NC_011205.1 activator of maltose metabolism genes; DNA-binding transcriptional regulator Nlp 3515670 439851003744 SeD_A3665 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator Nlp YP_002217277.1 3515383 D 439851 CDS YP_002217278.1 198243198 complement(3515729..3516988) 1 NC_011205.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3516988 murA 439851003745 murA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_002217278.1 3515729 R 439851 CDS YP_002217279.1 198243584 complement(3517042..3517296) 1 NC_011205.1 identified by match to protein family HMM PF01722; hypothetical protein 3517296 439851003746 SeD_A3667 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217279.1 3517042 R 439851 CDS YP_002217280.1 198244440 complement(3517484..3517780) 1 NC_011205.1 hypothetical protein 3517780 439851003747 SeD_A3668 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217280.1 3517484 R 439851 CDS YP_002217281.1 198243243 complement(3517780..3518415) 1 NC_011205.1 identified by match to protein family HMM PF05494; toluene tolerance protein Ttg2D 3518415 ttg2D 439851003748 ttg2D Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 toluene tolerance protein Ttg2D YP_002217281.1 3517780 R 439851 CDS YP_002217282.1 198242739 complement(3518434..3518985) 1 NC_011205.1 identified by match to protein family HMM PF02470; Mce family protein 3518985 439851003749 SeD_A3670 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Mce family protein YP_002217282.1 3518434 R 439851 CDS YP_002217283.1 198242766 complement(3518990..3519772) 1 NC_011205.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; toluene ABC transporter permease 3519772 439851003750 SeD_A3671 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 toluene ABC transporter permease YP_002217283.1 3518990 R 439851 CDS YP_002217284.1 198242251 complement(3519780..3520592) 1 NC_011205.1 ATP-binding subunit of a ABC toluene efflux transporter; ABC transporter ATP-binding protein YrbF 3520592 439851003751 SeD_A3672 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter ATP-binding protein YrbF YP_002217284.1 3519780 R 439851 CDS YP_002217285.1 198245260 3520805..3521782 1 NC_011205.1 YrbG; inner membrane protein involved in cell envelope integrity; sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; calcium/sodium:proton antiporter 3521782 439851003752 SeD_A3673 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 calcium/sodium:proton antiporter YP_002217285.1 3520805 D 439851 CDS YP_002217286.1 198244781 3521796..3522782 1 NC_011205.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; D-arabinose 5-phosphate isomerase 3522782 kdsD 439851003753 kdsD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-arabinose 5-phosphate isomerase YP_002217286.1 3521796 D 439851 CDS YP_002217287.1 198243715 3522803..3523369 1 NC_011205.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3523369 kdsC 439851003754 kdsC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_002217287.1 3522803 D 439851 CDS YP_002217288.1 198243210 3523366..3523941 1 NC_011205.1 identified by match to protein family HMM PF06835; hypothetical protein 3523941 439851003755 SeD_A3676 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217288.1 3523366 D 439851 CDS YP_002217289.1 198242711 3523910..3524464 1 NC_011205.1 LptA; periplasmic binding protein part of a ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system; lipopolysaccharide transport periplasmic protein LptA 3524464 lptA 439851003756 lptA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipopolysaccharide transport periplasmic protein LptA YP_002217289.1 3523910 D 439851 CDS YP_002217290.1 198242245 3524471..3525196 1 NC_011205.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein YhbG 3525196 lptB 439851003757 lptB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter ATP-binding protein YhbG YP_002217290.1 3524471 D 439851 CDS YP_002217291.1 198242246 3525244..3526677 1 NC_011205.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 3526677 rpoN 439851003758 rpoN Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RNA polymerase factor sigma-54 YP_002217291.1 3525244 D 439851 CDS YP_002217292.1 198246026 3526700..3526987 1 NC_011205.1 YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; sigma(54) modulation protein 3526987 yfiA 439851003759 yfiA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sigma(54) modulation protein YP_002217292.1 3526700 D 439851 CDS YP_002217293.1 198244865 3527105..3527596 1 NC_011205.1 identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419; PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN 3527596 ptsN 439851003760 ptsN Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_002217293.1 3527105 D 439851 CDS YP_002217294.1 198244702 3527642..3528496 1 NC_011205.1 identified by match to protein family HMM PF03668; hypothetical protein 3528496 439851003761 SeD_A3682 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217294.1 3527642 D 439851 CDS YP_002217295.1 198244258 3528493..3528765 1 NC_011205.1 N-regulated PTS (Npr); identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 3528765 ptsO 439851003762 ptsO Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) YP_002217295.1 3528493 D 439851 CDS YP_002217296.1 198243472 3529015..3529647 1 NC_011205.1 hypothetical protein 3529647 439851003763 SeD_A3684 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217296.1 3529015 D 439851 CDS YP_002217297.1 198242333 complement(3529722..3530450) 1 NC_011205.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 3530450 mtgA 439851003764 mtgA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 monofunctional biosynthetic peptidoglycan transglycosylase YP_002217297.1 3529722 R 439851 CDS YP_002217298.1 198241845 complement(3530447..3531100) 1 NC_011205.1 identified by match to protein family HMM PF01965; isoprenoid biosynthesis protein with amidotransferase-like domain 3531100 elbB 439851003765 elbB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 isoprenoid biosynthesis protein with amidotransferase-like domain YP_002217298.1 3530447 R 439851 CDS YP_002217299.1 198246231 complement(3531327..3533663) 1 NC_011205.1 sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB 3533663 439851003767 SeD_A3688 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aerobic respiration control sensor protein ArcB YP_002217299.1 3531327 R 439851 CDS YP_002217300.1 198245440 complement(3533757..3534686) 1 NC_011205.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; hypothetical protein 3534686 439851003768 SeD_A3689 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217300.1 3533757 R 439851 CDS YP_002217301.1 198244721 3539828..3541246 1 NC_011205.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3541246 gltD 439851003770 gltD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamate synthase subunit beta YP_002217301.1 3539828 D 439851 CDS YP_002217302.1 198244280 3541472..3542557 1 NC_011205.1 identified by match to protein family HMM PF06250; hypothetical protein 3542557 439851003771 SeD_A3692 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217302.1 3541472 D 439851 CDS YP_002217303.1 198242466 3542649..3543926 1 NC_011205.1 identified by match to protein family HMM PF02133; cytosine permease 3543926 codB 439851003772 codB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytosine permease YP_002217303.1 3542649 D 439851 CDS YP_002217304.1 198241968 3543913..3545193 1 NC_011205.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3545193 439851003773 SeD_A3694 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytosine deaminase YP_002217304.1 3543913 D 439851 CDS YP_002217305.1 198245422 complement(3545275..3545742) 1 NC_011205.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 3545742 439851003774 SeD_A3695 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217305.1 3545275 R 439851 CDS YP_002217306.1 198242658 complement(3545739..3546614) 1 NC_011205.1 catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase 3546614 439851003775 SeD_A3696 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N-acetylmannosamine kinase YP_002217306.1 3545739 R 439851 CDS YP_002217307.1 198244453 complement(3546611..3547300) 1 NC_011205.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 3547300 439851003776 SeD_A3697 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N-acetylmannosamine-6-phosphate 2-epimerase YP_002217307.1 3546611 R 439851 CDS YP_002217308.1 198246215 complement(3547347..3548837) 1 NC_011205.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00891; sialic acid transporter 3548837 439851003777 SeD_A3698 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sialic acid transporter YP_002217308.1 3547347 R 439851 CDS YP_002217309.1 198242925 complement(3548953..3549846) 1 NC_011205.1 catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase 3549846 nanA 439851003778 nanA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N-acetylneuraminate lyase YP_002217309.1 3548953 R 439851 CDS YP_002217310.1 198244550 complement(3549981..3550763) 1 NC_011205.1 Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; transcriptional regulator NanR 3550763 439851003779 SeD_A3700 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator NanR YP_002217310.1 3549981 R 439851 CDS YP_002217311.1 198242897 complement(3550881..3551381) 1 NC_011205.1 identified by match to protein family HMM PF04386; ClpXP protease specificity-enhancing factor 3551381 sspB 439851003780 sspB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ClpXP protease specificity-enhancing factor YP_002217311.1 3550881 R 439851 CDS YP_002217312.1 198242375 complement(3551387..3552025) 1 NC_011205.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 3552025 sspA 439851003781 sspA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 stringent starvation protein A YP_002217312.1 3551387 R 439851 CDS YP_002217313.1 198245518 complement(3553240..3553632) 1 NC_011205.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 3553632 rpsI 439851003783 rpsI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S9 YP_002217313.1 3553240 R 439851 CDS YP_002217314.1 198245035 complement(3553648..3554076) 1 NC_011205.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3554076 rplM 439851003784 rplM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L13 YP_002217314.1 3553648 R 439851 CDS YP_002217315.1 198244515 complement(3554378..3555502) 1 NC_011205.1 identified by match to protein family HMM PF03969; AFG1 family ATPase 3555502 439851003785 SeD_A3706 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 AFG1 family ATPase YP_002217315.1 3554378 R 439851 CDS YP_002217316.1 198243520 3555695..3556093 1 NC_011205.1 identified by match to protein family HMM PF06295; cytochrome d ubiquinol oxidase subunit III 3556093 439851003786 SeD_A3707 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome d ubiquinol oxidase subunit III YP_002217316.1 3555695 D 439851 CDS YP_002217317.1 198243897 3556250..3557617 1 NC_011205.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; serine endoprotease 3557617 439851003787 SeD_A3708 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 serine endoprotease YP_002217317.1 3556250 D 439851 CDS YP_002217318.1 198242513 3557710..3558780 1 NC_011205.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02038; serine endoprotease 3558780 degS 439851003788 degS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 serine endoprotease YP_002217318.1 3557710 D 439851 CDS YP_002217319.1 198244254 complement(3558814..3559476) 1 NC_011205.1 inner membrane protein 3559476 439851003789 SeD_A3710 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002217319.1 3558814 R 439851 CDS YP_002217320.1 198244641 complement(3559565..3560866) 1 NC_011205.1 identified by match to protein family HMM PF03977; match to protein family HMM TIGR01109; oxaloacetate decarboxylase beta chain 3560866 439851003790 SeD_A3711 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxaloacetate decarboxylase beta chain YP_002217320.1 3559565 R 439851 CDS YP_002217321.1 198245592 complement(3560879..3562651) 1 NC_011205.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 3562651 oadA 439851003791 oadA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxaloacetate decarboxylase YP_002217321.1 3560879 R 439851 CDS YP_002217322.1 198246212 complement(3562667..3562909) 1 NC_011205.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 3562909 439851003792 SeD_A3713 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oxaloacetate decarboxylase subunit gamma YP_002217322.1 3562667 R 439851 CDS YP_002217323.1 198242113 complement(3563066..3563683) 1 NC_011205.1 Involved in the tartrate degradation pathway; L(+)-tartrate dehydratase subunit beta 3563683 439851003793 SeD_A3714 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L(+)-tartrate dehydratase subunit beta YP_002217323.1 3563066 R 439851 CDS YP_002217324.1 198242688 complement(3563683..3564582) 1 NC_011205.1 Involved in the tartrate degradation pathway; tartrate dehydratase subunit alpha 3564582 439851003794 SeD_A3715 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tartrate dehydratase subunit alpha YP_002217324.1 3563683 R 439851 CDS YP_002217325.1 198242565 complement(3564615..3565883) 1 NC_011205.1 identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00785; anion transporter 3565883 439851003795 SeD_A3716 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anion transporter YP_002217325.1 3564615 R 439851 CDS YP_002217326.1 198242951 complement(3566094..3566759) 1 NC_011205.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; transcriptional regulator 3566759 439851003796 SeD_A3717 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002217326.1 3566094 R 439851 CDS YP_002217327.1 198243564 complement(3566746..3567375) 1 NC_011205.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 3567375 439851003797 SeD_A3718 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GntR family transcriptional regulator YP_002217327.1 3566746 R 439851 CDS YP_002217328.1 198244560 complement(3567495..3568433) 1 NC_011205.1 oxidizes malate to oxaloacetate; malate dehydrogenase 3568433 mdh 439851003798 mdh Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 malate dehydrogenase YP_002217328.1 3567495 R 439851 CDS YP_002217329.1 198241816 3568848..3569318 1 NC_011205.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor ArgR 3569318 argR 439851003799 argR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arginine repressor ArgR YP_002217329.1 3568848 D 439851 CDS YP_002217330.1 198242365 3569683..3569946 1 NC_011205.1 identified by match to protein family HMM PF07338; hypothetical protein 3569946 439851003800 SeD_A3721 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217330.1 3569683 D 439851 CDS YP_002217331.1 198243152 3570050..3570316 1 NC_011205.1 identified by match to protein family HMM PF07338; hypothetical protein 3570316 439851003801 SeD_A3722 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217331.1 3570050 D 439851 CDS YP_002217332.1 198243604 complement(3570376..3570648) 1 NC_011205.1 hypothetical protein 3570648 439851003802 SeD_A3723 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217332.1 3570376 R 439851 CDS YP_002217333.1 198244421 complement(3570820..3572787) 1 NC_011205.1 with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeB 3572787 aaeB 439851003803 aaeB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 p-hydroxybenzoic acid efflux subunit AaeB YP_002217333.1 3570820 R 439851 CDS YP_002217334.1 198244890 complement(3572793..3573725) 1 NC_011205.1 with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeA 3573725 aaeA 439851003804 aaeA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 p-hydroxybenzoic acid efflux subunit AaeA YP_002217334.1 3572793 R 439851 CDS YP_002217335.1 198245618 complement(3573733..3573936) 1 NC_011205.1 membrane protein AaeX; the gene is a member of the aaeXAB operon; hypothetical protein 3573936 aaeX 439851003805 aaeX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217335.1 3573733 R 439851 CDS YP_002217336.1 198246154 3574118..3575047 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 3575047 aaeR 439851003806 aaeR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator YP_002217336.1 3574118 D 439851 CDS YP_002217337.1 198242449 complement(3575169..3576614) 1 NC_011205.1 responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; protease TldD 3576614 tldD 439851003807 tldD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 protease TldD YP_002217337.1 3575169 R 439851 CDS YP_002217338.1 198243110 complement(3576759..3580559) 1 NC_011205.1 identified by match to protein family HMM TIGR02099; hypothetical protein 3580559 439851003808 SeD_A3729 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217338.1 3576759 R 439851 CDS YP_002217339.1 198245300 complement(3580670..3582139) 1 NC_011205.1 involved in the processing of the 5'end of 16S rRNA; ribonuclease G 3582139 cafA 439851003809 cafA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonuclease G YP_002217339.1 3580670 R 439851 CDS YP_002217340.1 198245678 complement(3582129..3582722) 1 NC_011205.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 3582722 maf 439851003810 maf Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Maf-like protein YP_002217340.1 3582129 R 439851 CDS YP_002217341.1 198245977 complement(3582731..3583222) 1 NC_011205.1 part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD 3583222 mreD 439851003811 mreD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 rod shape-determining protein MreD YP_002217341.1 3582731 R 439851 CDS YP_002217342.1 198242384 complement(3583222..3584274) 1 NC_011205.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 3584274 mreC 439851003812 mreC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 rod shape-determining protein MreC YP_002217342.1 3583222 R 439851 CDS YP_002217343.1 198243322 complement(3584339..3585382) 1 NC_011205.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 3585382 mreB 439851003813 mreB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 rod shape-determining protein MreB YP_002217343.1 3584339 R 439851 CDS YP_002217344.1 198243646 complement(3585690..3587630) 1 NC_011205.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 3587630 439851003814 SeD_A3735 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 regulatory protein CsrD YP_002217344.1 3585690 R 439851 CDS YP_002217345.1 198244168 3587834..3588808 1 NC_011205.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02823; hypothetical protein 3588808 439851003815 SeD_A3736 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217345.1 3587834 D 439851 CDS YP_002217346.1 198245414 3588921..3589925 1 NC_011205.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 3589925 439851003816 SeD_A3737 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfite oxidase subunit YedY YP_002217346.1 3588921 D 439851 CDS YP_002217347.1 198245892 3589926..3590525 1 NC_011205.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ 3590525 439851003817 SeD_A3738 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfite oxidase subunit YedZ YP_002217347.1 3589926 D 439851 CDS YP_002217348.1 198246111 3590918..3591388 1 NC_011205.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3591388 accB 439851003818 accB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_002217348.1 3590918 D 439851 CDS YP_002217349.1 198243570 3591399..3592748 1 NC_011205.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 3592748 accC 439851003819 accC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetyl-CoA carboxylase biotin carboxylase subunit YP_002217349.1 3591399 D 439851 CDS YP_002217350.1 198244880 3592857..3593099 1 NC_011205.1 identified by match to protein family HMM PF06196; hypothetical protein 3593099 439851003820 SeD_A3741 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217350.1 3592857 D 439851 CDS YP_002217351.1 198245619 3593089..3594540 1 NC_011205.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 3594540 panF 439851003821 panF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sodium/panthothenate symporter YP_002217351.1 3593089 D 439851 CDS YP_002217352.1 198245964 3594552..3595433 1 NC_011205.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 3595433 prmA 439851003822 prmA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribosomal protein L11 methyltransferase YP_002217352.1 3594552 D 439851 CDS YP_002217353.1 198242055 complement(3595519..3595662) 1 NC_011205.1 identified by glimmer; hypothetical protein 3595662 439851003823 SeD_A3744 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217353.1 3595519 R 439851 CDS YP_002217354.1 198242306 3596094..3597059 1 NC_011205.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737; tRNA-dihydrouridine synthase B 3597059 dusB 439851003824 dusB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA-dihydrouridine synthase B YP_002217354.1 3596094 D 439851 CDS YP_002217355.1 198243092 3597085..3597381 1 NC_011205.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 3597381 fis 439851003825 fis Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding protein Fis YP_002217355.1 3597085 D 439851 CDS YP_002217356.1 198244548 3597467..3598351 1 NC_011205.1 identified by match to protein family HMM PF01555; methyltransferase 3598351 439851003826 SeD_A3747 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methyltransferase YP_002217356.1 3597467 D 439851 CDS YP_002217357.1 198244961 3598434..3598598 1 NC_011205.1 hypothetical protein 3598598 439851003827 SeD_A3748 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217357.1 3598434 D 439851 CDS YP_002217358.1 198244652 3598749..3600848 1 NC_011205.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF03707; match to protein family HMM TIGR00254; ggdef domain/eal domain-containing protein 3600848 439851003828 SeD_A3749 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ggdef domain/eal domain-containing protein YP_002217358.1 3598749 D 439851 CDS YP_002217359.1 198242121 complement(3600851..3601513) 1 NC_011205.1 identified by match to protein family HMM PF00440; match to protein family HMM PF08361; DNA-binding transcriptional regulator EnvR 3601513 439851003829 SeD_A3750 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator EnvR YP_002217359.1 3600851 R 439851 CDS YP_002217360.1 198243923 3601586..3601744 1 NC_011205.1 hypothetical protein 3601744 439851003830 SeD_A3751 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217360.1 3601586 D 439851 CDS YP_002217361.1 198244653 3603092..3606205 1 NC_011205.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; AcrB protein 3606205 439851003832 SeD_A3754 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 AcrB protein YP_002217361.1 3603092 D 439851 CDS YP_002217362.1 198241955 complement(3606303..3606467) 1 NC_011205.1 hypothetical protein 3606467 439851003833 SeD_A3756 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217362.1 3606303 R 439851 CDS YP_002217363.1 198245811 3606443..3606664 1 NC_011205.1 lipoprotein 3606664 439851003834 SeD_A3755 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein YP_002217363.1 3606443 D 439851 CDS YP_008169836.1 528879905 3612984..3613106 1 NC_011205.1 hypothetical protein 3613106 439851003841 SeD_A3764 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_008169836.1 3612984 D 439851 CDS YP_002217364.1 198242672 complement(3613811..3614068) 1 NC_011205.1 identified by match to protein family HMM PF07369; hypothetical protein 3614068 439851003844 SeD_A3767 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217364.1 3613811 R 439851 CDS YP_002217365.1 198245934 complement(3614065..3614883) 1 NC_011205.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 3614883 aroE 439851003845 aroE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 shikimate 5-dehydrogenase YP_002217365.1 3614065 R 439851 CDS YP_002217366.1 198243534 complement(3614888..3615460) 1 NC_011205.1 RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA; ribosome maturation factor 3615460 439851003846 SeD_A3769 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribosome maturation factor YP_002217366.1 3614888 R 439851 CDS YP_002217367.1 198243895 complement(3615465..3616007) 1 NC_011205.1 identified by match to protein family HMM PF01396; topoisomerase DNA-binding C4 zinc finger domain-containing protein 3616007 439851003847 SeD_A3770 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 topoisomerase DNA-binding C4 zinc finger domain-containing protein YP_002217367.1 3615465 R 439851 CDS YP_002217368.1 198242233 complement(3616034..3616507) 1 NC_011205.1 identified by match to protein family HMM PF04361; hypothetical protein 3616507 smg 439851003848 smg Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217368.1 3616034 R 439851 CDS YP_002217369.1 198243264 complement(3616479..3617603) 1 NC_011205.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA 3617603 439851003849 SeD_A3772 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA protecting protein DprA YP_002217369.1 3616479 R 439851 CDS YP_002217370.1 198245506 3617735..3618244 1 NC_011205.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 3618244 def 439851003850 def Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptide deformylase YP_002217370.1 3617735 D 439851 CDS YP_002217371.1 198245996 3618260..3619207 1 NC_011205.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 3619207 fmt 439851003851 fmt Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methionyl-tRNA formyltransferase YP_002217371.1 3618260 D 439851 CDS YP_002217372.1 198244494 3619259..3620548 1 NC_011205.1 catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; 16S rRNA methyltransferase GidB 3620548 sun 439851003852 sun Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 16S rRNA methyltransferase GidB YP_002217372.1 3619259 D 439851 CDS YP_002217373.1 198246088 3620570..3621946 1 NC_011205.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component 3621946 trkA 439851003853 trkA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 potassium transporter peripheral membrane component YP_002217373.1 3620570 D 439851 CDS YP_002217374.1 198245207 3622088..3622501 1 NC_011205.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 3622501 mscL 439851003854 mscL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 large-conductance mechanosensitive channel YP_002217374.1 3622088 D 439851 CDS YP_002217375.1 198242753 complement(3622764..3623189) 1 NC_011205.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 3623189 zntR 439851003855 zntR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 zinc-responsive transcriptional regulator YP_002217375.1 3622764 R 439851 CDS YP_002217376.1 198241801 complement(3623200..3623568) 1 NC_011205.1 hypothetical protein 3623568 439851003856 SeD_A3779 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217376.1 3623200 R 439851 CDS YP_002217377.1 198243590 complement(3623676..3624059) 1 NC_011205.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 3624059 rplQ 439851003857 rplQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L17 YP_002217377.1 3623676 R 439851 CDS YP_002217378.1 198244932 complement(3624100..3625089) 1 NC_011205.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 3625089 rpoA 439851003858 rpoA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-directed RNA polymerase subunit alpha YP_002217378.1 3624100 R 439851 CDS YP_002217379.1 198244329 complement(3625115..3625735) 1 NC_011205.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 3625735 rpsD 439851003859 rpsD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S4 YP_002217379.1 3625115 R 439851 CDS YP_002217380.1 198246176 complement(3625769..3626158) 1 NC_011205.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 3626158 rpsK 439851003860 rpsK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S11 YP_002217380.1 3625769 R 439851 CDS YP_002217381.1 198245668 complement(3626175..3626531) 1 NC_011205.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 3626531 rpsM 439851003861 rpsM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S13 YP_002217381.1 3626175 R 439851 CDS YP_002217382.1 198244897 complement(3626826..3628157) 1 NC_011205.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 3628157 secY 439851003863 secY Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 preprotein translocase subunit SecY YP_002217382.1 3626826 R 439851 CDS YP_002217383.1 198244292 complement(3628165..3628599) 1 NC_011205.1 late assembly protein; 50S ribosomal protein L15 3628599 rplO 439851003864 rplO Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L15 YP_002217383.1 3628165 R 439851 CDS YP_002217384.1 198245868 complement(3628603..3628782) 1 NC_011205.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 3628782 rpmD 439851003865 rpmD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L30 YP_002217384.1 3628603 R 439851 CDS YP_002217385.1 198242338 complement(3628786..3629289) 1 NC_011205.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 3629289 rpsE 439851003866 rpsE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S5 YP_002217385.1 3628786 R 439851 CDS YP_002217386.1 198242804 complement(3629304..3629657) 1 NC_011205.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 3629657 rplR 439851003867 rplR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L18 YP_002217386.1 3629304 R 439851 CDS YP_002217387.1 198243609 complement(3629667..3630200) 1 NC_011205.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 3630200 rplF 439851003868 rplF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L6 YP_002217387.1 3629667 R 439851 CDS YP_002217388.1 198243127 complement(3630213..3630605) 1 NC_011205.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 3630605 rpsH 439851003869 rpsH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S8 YP_002217388.1 3630213 R 439851 CDS YP_002217389.1 198244933 complement(3630639..3630944) 1 NC_011205.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 3630944 rpsN 439851003870 rpsN Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S14 YP_002217389.1 3630639 R 439851 CDS YP_002217390.1 198244359 complement(3630959..3631498) 1 NC_011205.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 3631498 rplE 439851003871 rplE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L5 YP_002217390.1 3630959 R 439851 CDS YP_002217391.1 198246225 complement(3631513..3631827) 1 NC_011205.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 3631827 rplX 439851003872 rplX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L24 YP_002217391.1 3631513 R 439851 CDS YP_002217392.1 198244892 complement(3631838..3632209) 1 NC_011205.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 3632209 rplN 439851003873 rplN Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L14 YP_002217392.1 3631838 R 439851 CDS YP_002217393.1 198242683 complement(3632373..3632627) 1 NC_011205.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 3632627 rpsQ 439851003874 rpsQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S17 YP_002217393.1 3632373 R 439851 CDS YP_002217394.1 198242034 complement(3632627..3632818) 1 NC_011205.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 3632818 rpmC 439851003875 rpmC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L29 YP_002217394.1 3632627 R 439851 CDS YP_002217395.1 198245406 complement(3632818..3633228) 1 NC_011205.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 3633228 rplP 439851003876 rplP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L16 YP_002217395.1 3632818 R 439851 CDS YP_002217396.1 198242497 complement(3633241..3633942) 1 NC_011205.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 3633942 rpsC 439851003877 rpsC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S3 YP_002217396.1 3633241 R 439851 CDS YP_002217397.1 198246057 complement(3633960..3634292) 1 NC_011205.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 3634292 rplV 439851003878 rplV Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L22 YP_002217397.1 3633960 R 439851 CDS YP_002217398.1 198245290 complement(3634307..3634585) 1 NC_011205.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 3634585 rpsS 439851003879 rpsS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S19 YP_002217398.1 3634307 R 439851 CDS YP_002217399.1 198245024 complement(3634602..3635423) 1 NC_011205.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 3635423 rplB 439851003880 rplB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L2 YP_002217399.1 3634602 R 439851 CDS YP_002217400.1 198244325 complement(3635441..3635743) 1 NC_011205.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 3635743 rplW 439851003881 rplW Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L23 YP_002217400.1 3635441 R 439851 CDS YP_002217401.1 198243728 complement(3635740..3636345) 1 NC_011205.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 3636345 rplD 439851003882 rplD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L4 YP_002217401.1 3635740 R 439851 CDS YP_002217402.1 198243139 complement(3636356..3636985) 1 NC_011205.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 3636985 rplC 439851003883 rplC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L3 YP_002217402.1 3636356 R 439851 CDS YP_002217403.1 198246251 complement(3637018..3637329) 1 NC_011205.1 identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049; 30S ribosomal protein S10 3637329 rpsJ 439851003884 rpsJ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S10 YP_002217403.1 3637018 R 439851 CDS YP_002217404.1 198241870 3637709..3638176 1 NC_011205.1 identified by match to protein family HMM PF01478; type III leader peptidase 3638176 439851003885 SeD_A3809 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type III leader peptidase YP_002217404.1 3637709 D 439851 CDS YP_002217405.1 198244389 complement(3638173..3638649) 1 NC_011205.1 iron storage protein; bacterioferritin 3638649 bfr 439851003886 bfr Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bacterioferritin YP_002217405.1 3638173 R 439851 CDS YP_002217406.1 198242334 complement(3638722..3638916) 1 NC_011205.1 identified by match to protein family HMM PF04324; bacterioferritin-associated ferredoxin 3638916 bfd 439851003887 bfd Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bacterioferritin-associated ferredoxin YP_002217406.1 3638722 R 439851 CDS YP_002217407.1 198243125 complement(3639101..3640285) 1 NC_011205.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 3640285 tuf2 439851003888 tuf2 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 elongation factor Tu YP_002217407.1 3639101 R 439851 CDS YP_002217408.1 198243645 complement(3640357..3642471) 1 NC_011205.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3642471 fusA 439851003890 fusA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 elongation factor G YP_002217408.1 3640357 R 439851 CDS YP_002217409.1 198243602 complement(3642568..3643038) 1 NC_011205.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 3643038 rpsG 439851003891 rpsG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S7 YP_002217409.1 3642568 R 439851 CDS YP_002217410.1 198244511 complement(3643134..3643508) 1 NC_011205.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 3643508 rpsL 439851003892 rpsL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S12 YP_002217410.1 3643134 R 439851 CDS YP_002217411.1 198246008 complement(3643634..3643921) 1 NC_011205.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusB 3643921 dsrH 439851003893 dsrH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfur transfer complex subunit TusB YP_002217411.1 3643634 R 439851 CDS YP_002217412.1 198241890 complement(3643929..3644285) 1 NC_011205.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC 3644285 tusC 439851003894 tusC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfur relay protein TusC YP_002217412.1 3643929 R 439851 CDS YP_002217413.1 198243569 complement(3644285..3644671) 1 NC_011205.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 3644671 tusD 439851003895 tusD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfur transfer complex subunit TusD YP_002217413.1 3644285 R 439851 CDS YP_002217414.1 198246219 complement(3644671..3645393) 1 NC_011205.1 identified by match to protein family HMM PF08348; hypothetical protein 3645393 439851003896 SeD_A3820 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217414.1 3644671 R 439851 CDS YP_002217415.1 198245575 complement(3645669..3646487) 1 NC_011205.1 rotamase; FKBP-type peptidylprolyl isomerase 3646487 439851003897 SeD_A3821 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 FKBP-type peptidylprolyl isomerase YP_002217415.1 3645669 R 439851 CDS YP_002217416.1 198244914 3646707..3646925 1 NC_011205.1 identified by match to protein family HMM PF04102; hypothetical protein 3646925 439851003898 SeD_A3822 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217416.1 3646707 D 439851 CDS YP_002217417.1 198244338 complement(3647114..3647704) 1 NC_011205.1 rotamase; FKBP-type peptidylprolyl isomerase 3647704 slyD 439851003899 slyD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 FKBP-type peptidylprolyl isomerase YP_002217417.1 3647114 R 439851 CDS YP_002217418.1 198243707 complement(3647799..3647999) 1 NC_011205.1 identified by match to protein family HMM TIGR02443; hypothetical protein 3647999 439851003900 SeD_A3824 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217418.1 3647799 R 439851 CDS YP_002217419.1 198243077 complement(3648009..3649814) 1 NC_011205.1 involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB 3649814 kefB 439851003901 kefB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione-regulated potassium-efflux system protein KefB YP_002217419.1 3648009 R 439851 CDS YP_002217420.1 198243696 complement(3649814..3650365) 1 NC_011205.1 required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG 3650365 kefG 439851003902 kefG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione-regulated potassium-efflux system ancillary protein KefG YP_002217420.1 3649814 R 439851 CDS YP_002217421.1 198242437 3650631..3652538 1 NC_011205.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3652538 439851003903 SeD_A3827 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter ATP-binding protein YP_002217421.1 3650631 D 439851 CDS YP_002217422.1 198246200 3652701..3652922 1 NC_011205.1 ATPase of ABC transporter with duplicated ATPase domain-containing protein 3652922 439851003904 SeD_A3828 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATPase of ABC transporter with duplicated ATPase domain-containing protein YP_002217422.1 3652701 D 439851 CDS YP_002217423.1 198243941 3653541..3654500 1 NC_011205.1 identified by match to protein family HMM PF00561; hydrolase 3654500 439851003906 SeD_A3830 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hydrolase YP_002217423.1 3653541 D 439851 CDS YP_002217424.1 198243439 3654497..3654715 1 NC_011205.1 identified by match to protein family HMM PF06794; hypothetical protein 3654715 439851003907 SeD_A3831 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217424.1 3654497 D 439851 CDS YP_002217425.1 198242648 3654766..3655635 1 NC_011205.1 identified by match to protein family HMM PF00485; phosphoribulokinase/uridine kinase family protein 3655635 439851003908 SeD_A3832 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoribulokinase/uridine kinase family protein YP_002217425.1 3654766 D 439851 CDS YP_002217426.1 198242114 complement(3655731..3656135) 1 NC_011205.1 identified by match to protein family HMM PF02566; hypothetical protein 3656135 439851003909 SeD_A3833 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217426.1 3655731 R 439851 CDS YP_002217427.1 198245710 3656443..3657075 1 NC_011205.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 3657075 crp 439851003910 crp Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cAMP-regulatory protein YP_002217427.1 3656443 D 439851 CDS YP_002217428.1 198245394 3657124..3659211 1 NC_011205.1 identified by match to protein family HMM PF05976; match to protein family HMM TIGR01667; hypothetical protein 3659211 439851003911 SeD_A3835 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217428.1 3657124 D 439851 CDS YP_002217429.1 198244442 complement(3659254..3660471) 1 NC_011205.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 3660471 argD 439851003912 argD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_002217429.1 3659254 R 439851 CDS YP_002217430.1 198244012 complement(3660557..3661120) 1 NC_011205.1 aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II 3661120 pabA 439851003913 pabA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 para-aminobenzoate synthase component II YP_002217430.1 3660557 R 439851 CDS YP_002217431.1 198244184 complement(3661152..3661754) 1 NC_011205.1 identified by match to protein family HMM PF02661; cell filamentation protein Fic 3661754 fic 439851003914 fic Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell filamentation protein Fic YP_002217431.1 3661152 R 439851 CDS YP_002217432.1 198244917 complement(3661744..3661911) 1 NC_011205.1 hypothetical protein 3661911 439851003915 SeD_A3839 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217432.1 3661744 R 439851 CDS YP_002217433.1 198245148 complement(3662020..3662592) 1 NC_011205.1 (rotamase A); identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase A (rotamase A) 3662592 ppiA 439851003916 ppiA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidyl-prolyl cis-trans isomerase A (rotamase A) YP_002217433.1 3662020 R 439851 CDS YP_002217434.1 198245921 3662869..3664050 1 NC_011205.1 identified by match to protein family HMM PF07690; hypothetical protein 3664050 tsgA 439851003917 tsgA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217434.1 3662869 D 439851 CDS YP_002217435.1 198242811 complement(3664184..3664360) 1 NC_011205.1 hypothetical protein 3664360 439851003918 SeD_A3843 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217435.1 3664184 R 439851 CDS YP_002217436.1 198243194 3664313..3666856 1 NC_011205.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374; nitrite reductase [NAD(P)H], large subunit 3666856 nirB 439851003919 nirB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitrite reductase [NAD(P)H], large subunit YP_002217436.1 3664313 D 439851 CDS YP_002217437.1 198244067 3666853..3667179 1 NC_011205.1 involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; nitrite reductase small subunit 3667179 nirD 439851003920 nirD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitrite reductase small subunit YP_002217437.1 3666853 D 439851 CDS YP_002217438.1 198244441 3667375..3668184 1 NC_011205.1 member of the FNT family of formate and nitrite transporters; nitrite transporter NirC 3668184 nirC 439851003921 nirC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitrite transporter NirC YP_002217438.1 3667375 D 439851 CDS YP_002217439.1 198244791 3668196..3669569 1 NC_011205.1 multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin; siroheme synthase 3669569 cysG 439851003922 cysG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 siroheme synthase YP_002217439.1 3668196 D 439851 CDS YP_002217440.1 198242549 3669907..3675678 1 NC_011205.1 identified by match to protein family HMM PF03797; porin 3675678 439851003923 SeD_A3847 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 porin YP_002217440.1 3669907 D 439851 CDS YP_002217441.1 198246193 3675871..3676041 1 NC_011205.1 outer membrane lipoprotein 3676041 439851003924 SeD_A3848 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane lipoprotein YP_002217441.1 3675871 D 439851 CDS YP_002217442.1 198244372 complement(3676186..3677190) 1 NC_011205.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 3677190 trpS 439851003925 trpS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tryptophanyl-tRNA synthetase YP_002217442.1 3676186 R 439851 CDS YP_002217443.1 198244539 complement(3677183..3677941) 1 NC_011205.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 3677941 gph 439851003926 gph Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoglycolate phosphatase YP_002217443.1 3677183 R 439851 CDS YP_002217444.1 198245033 complement(3677934..3678611) 1 NC_011205.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 3678611 rpe 439851003927 rpe Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribulose-phosphate 3-epimerase YP_002217444.1 3677934 R 439851 CDS YP_002217445.1 198243043 complement(3678629..3679465) 1 NC_011205.1 identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571; DNA adenine methylase 3679465 dam 439851003928 dam Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA adenine methylase YP_002217445.1 3678629 R 439851 CDS YP_002217446.1 198243521 complement(3679646..3680923) 1 NC_011205.1 identified by match to protein family HMM PF05036; hypothetical protein 3680923 439851003929 SeD_A3853 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217446.1 3679646 R 439851 CDS YP_002217447.1 198245484 complement(3681021..3682109) 1 NC_011205.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 3682109 aroB 439851003930 aroB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-dehydroquinate synthase YP_002217447.1 3681021 R 439851 CDS YP_002217448.1 198246005 complement(3682166..3682687) 1 NC_011205.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 3682687 aroK 439851003931 aroK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 shikimate kinase I YP_002217448.1 3682166 R 439851 CDS YP_002217449.1 198242372 complement(3684306..3684653) 1 NC_011205.1 hypothetical protein 3684653 439851003933 SeD_A3858 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217449.1 3684306 R 439851 CDS YP_002217450.1 198241751 complement(3684697..3685170) 1 NC_011205.1 inner membrane protein 3685170 439851003934 SeD_A3859 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002217450.1 3684697 R 439851 CDS YP_002217451.1 198243948 complement(3685154..3685693) 1 NC_011205.1 identified by match to protein family HMM PF05137; PilN family protein 3685693 439851003935 SeD_A3860 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PilN family protein YP_002217451.1 3685154 R 439851 CDS YP_002217452.1 198244536 3686593..3689145 1 NC_011205.1 bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; peptidoglycan synthetase 3689145 mrcA 439851003937 mrcA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidoglycan synthetase YP_002217452.1 3686593 D 439851 CDS YP_002217453.1 198246007 complement(3689241..3689837) 1 NC_011205.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 3689837 nudE 439851003938 nudE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ADP-ribose diphosphatase NudE YP_002217453.1 3689241 R 439851 CDS YP_002217454.1 198245938 3690127..3692259 1 NC_011205.1 identified by match to protein family HMM PF07095; intracellular growth attenuator protein IgaA 3692259 439851003939 SeD_A3864 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 intracellular growth attenuator protein IgaA YP_002217454.1 3690127 D 439851 CDS YP_002217455.1 198245958 3692324..3692992 1 NC_011205.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD hydrolase, IA family 3692992 439851003940 SeD_A3865 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 HAD hydrolase, IA family YP_002217455.1 3692324 D 439851 CDS YP_002217456.1 198245320 3693003..3693404 1 NC_011205.1 identified by match to protein family HMM PF01479; ribosome-associated heat shock protein Hsp15 3693404 hslR 439851003941 hslR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribosome-associated heat shock protein Hsp15 YP_002217456.1 3693003 D 439851 CDS YP_002217457.1 198245919 3693423..3694307 1 NC_011205.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 3694307 hslO 439851003942 hslO Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Hsp33-like chaperonin YP_002217457.1 3693423 D 439851 CDS YP_002217458.1 198244032 complement(3694418..3696127) 1 NC_011205.1 hypothetical protein 3696127 439851003943 SeD_A3868 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217458.1 3694418 R 439851 CDS YP_002217459.1 198243343 3696507..3698126 1 NC_011205.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 3698126 pckA 439851003944 pckA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoenolpyruvate carboxykinase YP_002217459.1 3696507 D 439851 CDS YP_002217460.1 198243010 complement(3698201..3699544) 1 NC_011205.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 3699544 envZ 439851003945 envZ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 osmolarity sensor protein YP_002217460.1 3698201 R 439851 CDS YP_002217461.1 198243980 complement(3699550..3700269) 1 NC_011205.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 3700269 ompR 439851003946 ompR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 osmolarity response regulator YP_002217461.1 3699550 R 439851 CDS YP_002217462.1 198242185 3700495..3700968 1 NC_011205.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 3700968 greB 439851003947 greB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcription elongation factor GreB YP_002217462.1 3700495 D 439851 CDS YP_002217463.1 198242502 3701067..3703397 1 NC_011205.1 identified by match to protein family HMM PF00575; transcriptional accessory protein 3703397 439851003948 SeD_A3873 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional accessory protein YP_002217463.1 3701067 D 439851 CDS YP_002217464.1 198245537 3703834..3704061 1 NC_011205.1 identified by match to protein family HMM PF04023; ferrous iron transport protein A 3704061 feoA 439851003949 feoA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ferrous iron transport protein A YP_002217464.1 3703834 D 439851 CDS YP_002217465.1 198245311 3704080..3706398 1 NC_011205.1 cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; ferrous iron transport protein B 3706398 feoB 439851003950 feoB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ferrous iron transport protein B YP_002217465.1 3704080 D 439851 CDS YP_002217466.1 198245917 3706411..3706647 1 NC_011205.1 identified by match to protein family HMM PF09012; hypothetical protein 3706647 439851003951 SeD_A3876 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217466.1 3706411 D 439851 CDS YP_002217467.1 198245295 3706699..3706812 1 NC_011205.1 identified by glimmer; hypothetical protein 3706812 439851003952 SeD_A3877 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217467.1 3706699 D 439851 CDS YP_002217468.1 198245712 3706882..3707808 1 NC_011205.1 identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein 3707808 439851003953 SeD_A3878 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217468.1 3706882 D 439851 CDS YP_002217469.1 198246112 complement(3707844..3708614) 1 NC_011205.1 Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; carboxylesterase BioH 3708614 439851003954 SeD_A3879 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 carboxylesterase BioH YP_002217469.1 3707844 R 439851 CDS YP_002217470.1 198244770 3708652..3709335 1 NC_011205.1 involved in high-affinity gluconate transport; gluconate periplasmic binding protein 3709335 gntX 439851003955 gntX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gluconate periplasmic binding protein YP_002217470.1 3708652 D 439851 CDS YP_002217471.1 198244988 3709394..3709969 1 NC_011205.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein 3709969 gntY 439851003956 gntY Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA uptake protein YP_002217471.1 3709394 D 439851 CDS YP_002217472.1 198243225 3710346..3711662 1 NC_011205.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791; high-affinity gluconate transporter 3711662 gntT 439851003957 gntT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 high-affinity gluconate transporter YP_002217472.1 3710346 D 439851 CDS YP_002217473.1 198243462 complement(3711781..3713859) 1 NC_011205.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 3713859 malQ 439851003958 malQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-alpha-glucanotransferase YP_002217473.1 3711781 R 439851 CDS YP_002217474.1 198241813 complement(3713869..3716262) 1 NC_011205.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; maltodextrin phosphorylase 3716262 439851003959 SeD_A3884 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 maltodextrin phosphorylase YP_002217474.1 3713869 R 439851 CDS YP_002217475.1 198242561 3716856..3719564 1 NC_011205.1 Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT 3719564 malT 439851003960 malT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator MalT YP_002217475.1 3716856 D 439851 CDS YP_002217476.1 198245208 complement(3719652..3719927) 1 NC_011205.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR00053; match to protein family HMM TIGR02385; hypothetical protein 3719927 439851003961 SeD_A3886 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217476.1 3719652 R 439851 CDS YP_002217477.1 198243460 complement(3719930..3720190) 1 NC_011205.1 identified by match to protein family HMM PF04221; match to protein family HMM TIGR02384; DNA-damage-inducible protein J 3720190 439851003962 SeD_A3887 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-damage-inducible protein J YP_002217477.1 3719930 R 439851 CDS YP_002217478.1 198243989 complement(3721314..3722531) 1 NC_011205.1 identified by match to protein family HMM PF01139; RtcB protein 3722531 rtcB 439851003965 rtcB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RtcB protein YP_002217478.1 3721314 R 439851 CDS YP_002217479.1 198245441 complement(3722876..3724429) 1 NC_011205.1 identified by match to protein family HMM PF05731; 60-kDa SS-A/Ro ribonucleoprotein 3724429 439851003966 SeD_A3891 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 60-kDa SS-A/Ro ribonucleoprotein YP_002217479.1 3722876 R 439851 CDS YP_002217480.1 198241966 3724619..3726202 1 NC_011205.1 identified by match to protein family HMM PF00158; match to protein family HMM PF06956; match to protein family HMM PF07728; transcriptional regulator RtcR 3726202 439851003967 SeD_A3892 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator RtcR YP_002217480.1 3724619 D 439851 CDS YP_002217481.1 198244823 complement(3726199..3726957) 1 NC_011205.1 represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism; DNA-binding transcriptional repressor GlpR 3726957 439851003968 SeD_A3893 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional repressor GlpR YP_002217481.1 3726199 R 439851 CDS YP_002217482.1 198245689 complement(3727051..3727881) 1 NC_011205.1 protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; intramembrane serine protease GlpG 3727881 439851003969 SeD_A3894 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 intramembrane serine protease GlpG YP_002217482.1 3727051 R 439851 CDS YP_002217483.1 198242994 complement(3727957..3728283) 1 NC_011205.1 belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase 3728283 glpE 439851003970 glpE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiosulfate sulfurtransferase YP_002217483.1 3727957 R 439851 CDS YP_002217484.1 198242166 3728482..3729990 1 NC_011205.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 3729990 glpD 439851003971 glpD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycerol-3-phosphate dehydrogenase YP_002217484.1 3728482 D 439851 CDS YP_002217485.1 198242177 complement(3730037..3730582) 1 NC_011205.1 hypothetical protein 3730582 439851003972 SeD_A3897 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217485.1 3730037 R 439851 CDS YP_002217486.1 198246169 complement(3730592..3732088) 1 NC_011205.1 periplasmic phosphate-binding protein 3732088 439851003973 SeD_A3898 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 periplasmic phosphate-binding protein YP_002217486.1 3730592 R 439851 CDS YP_002217487.1 198245646 complement(3732246..3733355) 1 NC_011205.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 3733355 gldA 439851003974 gldA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycerol dehydrogenase YP_002217487.1 3732246 R 439851 CDS YP_002217488.1 198244952 3733693..3735027 1 NC_011205.1 identified by match to protein family HMM PF07690; major facilitator superfamily MFS_1 3735027 439851003975 SeD_A3900 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 major facilitator superfamily MFS_1 YP_002217488.1 3733693 D 439851 CDS YP_002217489.1 198243652 3735024..3736739 1 NC_011205.1 identified by match to protein family HMM PF00920; dihydroxy-acid dehydratase 3736739 439851003976 SeD_A3901 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dihydroxy-acid dehydratase YP_002217489.1 3735024 D 439851 CDS YP_002217490.1 198243099 3736783..3737688 1 NC_011205.1 identified by match to protein family HMM PF00701; dihydrodipicolinate synthetase 3737688 439851003977 SeD_A3902 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dihydrodipicolinate synthetase YP_002217490.1 3736783 D 439851 CDS YP_002217491.1 198242312 complement(3737732..3738487) 1 NC_011205.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339; transcriptional regulator 3738487 439851003978 SeD_A3903 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002217491.1 3737732 R 439851 CDS YP_002217492.1 198241825 complement(3738665..3741112) 1 NC_011205.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen phosphorylase 3741112 439851003979 SeD_A3904 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycogen phosphorylase YP_002217492.1 3738665 R 439851 CDS YP_002217493.1 198246172 complement(3741132..3742565) 1 NC_011205.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 3742565 glgA 439851003980 glgA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycogen synthase YP_002217493.1 3741132 R 439851 CDS YP_002217494.1 198245497 complement(3742565..3743860) 1 NC_011205.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 3743860 glgC 439851003981 glgC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucose-1-phosphate adenylyltransferase YP_002217494.1 3742565 R 439851 CDS YP_002217495.1 198242893 complement(3743875..3745851) 1 NC_011205.1 catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen; glycogen debranching enzyme 3745851 glgX 439851003982 glgX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycogen debranching enzyme YP_002217495.1 3743875 R 439851 CDS YP_002217496.1 198243686 complement(3745848..3748034) 1 NC_011205.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme 3748034 glgB 439851003983 glgB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycogen branching enzyme YP_002217496.1 3745848 R 439851 CDS YP_002217497.1 198242142 complement(3748383..3749558) 1 NC_011205.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 3749558 asd 439851003984 asd Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aspartate-semialdehyde dehydrogenase YP_002217497.1 3748383 R 439851 CDS YP_002217498.1 198242636 complement(3749913..3751253) 1 NC_011205.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791; low affinity gluconate transporter 3751253 gntU 439851003985 gntU Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 low affinity gluconate transporter YP_002217498.1 3749913 R 439851 CDS YP_002217499.1 198245650 complement(3751250..3751744) 1 NC_011205.1 thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; gluconate kinase 1 3751744 gntK 439851003986 gntK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gluconate kinase 1 YP_002217499.1 3751250 R 439851 CDS YP_002217500.1 198245264 complement(3751922..3752983) 1 NC_011205.1 identified by match to protein family HMM PF00532; transcriptional regulator GntR 3752983 gntR 439851003987 gntR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator GntR YP_002217500.1 3751922 R 439851 CDS YP_002217501.1 198245774 complement(3753047..3753742) 1 NC_011205.1 identified by match to protein family HMM PF02678; match to protein family HMM PF07883; hypothetical protein 3753742 439851003988 SeD_A3913 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217501.1 3753047 R 439851 CDS YP_002217502.1 198244027 complement(3753866..3754903) 1 NC_011205.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; dehydrogenase 3754903 439851003989 SeD_A3914 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dehydrogenase YP_002217502.1 3753866 R 439851 CDS YP_002217503.1 198244780 3755370..3755858 1 NC_011205.1 YhhY; regulated by the fur regulator; unknown function; acetyltransferase YhhY 3755858 439851003991 SeD_A3916 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetyltransferase YhhY YP_002217503.1 3755370 D 439851 CDS YP_002217504.1 198243295 complement(3755939..3756055) 1 NC_011205.1 identified by glimmer; hypothetical protein 3756055 439851003992 SeD_A3917 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217504.1 3755939 R 439851 CDS YP_002217505.1 198242785 3756123..3757337 1 NC_011205.1 identified by match to protein family HMM PF00294; match to protein family HMM PF08220; match to protein family HMM PF08543; ribokinase 3757337 439851003993 SeD_A3918 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribokinase YP_002217505.1 3756123 D 439851 CDS YP_002217506.1 198245403 3757353..3758114 1 NC_011205.1 identified by match to protein family HMM PF07090; hypothetical protein 3758114 439851003994 SeD_A3919 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217506.1 3757353 D 439851 CDS YP_002217507.1 198245762 3758168..3759139 1 NC_011205.1 inner membrane protein 3759139 439851003995 SeD_A3920 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002217507.1 3758168 D 439851 CDS YP_002217508.1 198246113 3759136..3760170 1 NC_011205.1 identified by match to protein family HMM PF02126; phophotriesterase 3760170 439851003996 SeD_A3921 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phophotriesterase YP_002217508.1 3759136 D 439851 CDS YP_002217509.1 198244704 complement(3760215..3761957) 1 NC_011205.1 periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides; gamma-glutamyltranspeptidase 3761957 ggt 439851003997 ggt Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gamma-glutamyltranspeptidase YP_002217509.1 3760215 R 439851 CDS YP_002217510.1 198243176 3762083..3762499 1 NC_011205.1 hypothetical protein 3762499 439851003998 SeD_A3923 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217510.1 3762083 D 439851 CDS YP_002217511.1 198245064 complement(3762496..3763236) 1 NC_011205.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; cytoplasmic glycerophosphodiester phosphodiesterase 3763236 ugpQ 439851003999 ugpQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytoplasmic glycerophosphodiester phosphodiesterase YP_002217511.1 3762496 R 439851 CDS YP_002217512.1 198243901 complement(3763233..3764303) 1 NC_011205.1 part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit 3764303 ugpC 439851004000 ugpC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycerol-3-phosphate transporter ATP-binding subunit YP_002217512.1 3763233 R 439851 CDS YP_002217513.1 198241815 complement(3764305..3765150) 1 NC_011205.1 with UgpABC is involved in uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter membrane protein 3765150 439851004001 SeD_A3926 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycerol-3-phosphate transporter membrane protein YP_002217513.1 3764305 R 439851 CDS YP_002217514.1 198242317 complement(3765147..3766034) 1 NC_011205.1 with UgpEC is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter permease 3766034 ugpA 439851004002 ugpA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycerol-3-phosphate transporter permease YP_002217514.1 3765147 R 439851 CDS YP_002217515.1 198244402 complement(3766139..3767455) 1 NC_011205.1 with UgpACE is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter periplasmic binding protein 3767455 ugpB 439851004003 ugpB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycerol-3-phosphate transporter periplasmic binding protein YP_002217515.1 3766139 R 439851 CDS YP_002217516.1 198244066 complement(3767714..3768082) 1 NC_011205.1 identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550; death on curing protein 3768082 439851004004 SeD_A3929 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 death on curing protein YP_002217516.1 3767714 R 439851 CDS YP_002217517.1 198245945 complement(3768079..3768300) 1 NC_011205.1 identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552; Axe family addiction module antitoxin 3768300 439851004005 SeD_A3930 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Axe family addiction module antitoxin YP_002217517.1 3768079 R 439851 CDS YP_002217518.1 198242800 complement(3768431..3769144) 1 NC_011205.1 with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 3769144 livF 439851004006 livF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 leucine/isoleucine/valine transporter ATP-binding subunit YP_002217518.1 3768431 R 439851 CDS YP_002217519.1 198242379 complement(3769146..3769913) 1 NC_011205.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 3769913 livG 439851004007 livG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 leucine/isoleucine/valine transporter ATP-binding subunit YP_002217519.1 3769146 R 439851 CDS YP_002217520.1 198242024 complement(3769910..3771187) 1 NC_011205.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit 3771187 livM 439851004008 livM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 leucine/isoleucine/valine transporter permease subunit YP_002217520.1 3769910 R 439851 CDS YP_002217521.1 198243928 complement(3771184..3772110) 1 NC_011205.1 LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; branched-chain amino acid transporter permease subunit LivH 3772110 livH 439851004009 livH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 branched-chain amino acid transporter permease subunit LivH YP_002217521.1 3771184 R 439851 CDS YP_002217522.1 198243035 complement(3772170..3773279) 1 NC_011205.1 identified by match to protein family HMM PF01094; high-affinity branched-chain amino acid ABC transporter periplasmic leucine-specific-binding protein LivK 3773279 livK 439851004010 livK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 high-affinity branched-chain amino acid ABC transporter periplasmic leucine-specific-binding protein LivK YP_002217522.1 3772170 R 439851 CDS YP_002217523.1 198244872 3773701..3774084 1 NC_011205.1 identified by match to protein family HMM PF00583; GNAT family acetyltransferase 3774084 439851004011 SeD_A3936 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GNAT family acetyltransferase YP_002217523.1 3773701 D 439851 CDS YP_002217524.1 198244621 3774062..3774196 1 NC_011205.1 hypothetical protein 3774196 439851004012 SeD_A3937 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217524.1 3774062 D 439851 CDS YP_002217525.1 198243020 complement(3774280..3775383) 1 NC_011205.1 identified by match to protein family HMM PF01094; leucine-specific-binding protein 3775383 439851004013 SeD_A3938 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 leucine-specific-binding protein YP_002217525.1 3774280 R 439851 CDS YP_002217526.1 198244039 complement(3775705..3776559) 1 NC_011205.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 3776559 rpoH 439851004014 rpoH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RNA polymerase factor sigma-32 YP_002217526.1 3775705 R 439851 CDS YP_002217527.1 198246240 complement(3776805..3777860) 1 NC_011205.1 ABC transporter, membrane protein; cell division protein FtsX 3777860 ftsX 439851004015 ftsX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell division protein FtsX YP_002217527.1 3776805 R 439851 CDS YP_002217528.1 198245582 complement(3777853..3778521) 1 NC_011205.1 ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; cell division protein FtsE 3778521 ftsE 439851004016 ftsE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell division protein FtsE YP_002217528.1 3777853 R 439851 CDS YP_002217529.1 198242705 complement(3778524..3779999) 1 NC_011205.1 signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; cell division protein FtsY 3779999 439851004017 SeD_A3942 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell division protein FtsY YP_002217529.1 3778524 R 439851 CDS YP_002217530.1 198242017 3780098..3780721 1 NC_011205.1 catalyzes the methylation of 16S rRNA at position G966; 16S rRNA m(2)G966-methyltransferase 3780721 rsmD 439851004018 rsmD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 16S rRNA m(2)G966-methyltransferase YP_002217530.1 3780098 D 439851 CDS YP_002217531.1 198243217 3780711..3780980 1 NC_011205.1 identified by match to protein family HMM PF06611; hypothetical protein 3780980 439851004019 SeD_A3944 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217531.1 3780711 D 439851 CDS YP_002217532.1 198242961 complement(3781002..3781373) 1 NC_011205.1 hypothetical protein 3781373 439851004020 SeD_A3945 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217532.1 3781002 R 439851 CDS YP_002217533.1 198244711 3781515..3782141 1 NC_011205.1 identified by match to protein family HMM PF07947; hypothetical protein 3782141 439851004021 SeD_A3946 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217533.1 3781515 D 439851 CDS YP_002217534.1 198246218 complement(3782206..3782364) 1 NC_011205.1 identified by glimmer; hypothetical protein 3782364 439851004022 SeD_A3947 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217534.1 3782206 R 439851 CDS YP_002217535.1 198242165 3782222..3784420 1 NC_011205.1 P-type ATPase involved in the export of lead, cadmium, zinc and mercury; zinc/cadmium/mercury/lead-transporting ATPase 3784420 zntA 439851004023 zntA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 zinc/cadmium/mercury/lead-transporting ATPase YP_002217535.1 3782222 D 439851 CDS YP_002217536.1 198242297 3784620..3786263 1 NC_011205.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein I 3786263 439851004024 SeD_A3949 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methyl-accepting chemotaxis protein I YP_002217536.1 3784620 D 439851 CDS YP_002217537.1 198242809 complement(3786287..3786622) 1 NC_011205.1 identified by match to protein family HMM PF01206; hypothetical protein 3786622 439851004025 SeD_A3950 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217537.1 3786287 R 439851 CDS YP_002217538.1 198245687 3786702..3787367 1 NC_011205.1 identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein 3787367 439851004026 SeD_A3951 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217538.1 3786702 D 439851 CDS YP_002217539.1 198244215 3787440..3787997 1 NC_011205.1 hypothetical protein 3787997 439851004027 SeD_A3952 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217539.1 3787440 D 439851 CDS YP_002217540.1 198243187 complement(3788001..3789218) 1 NC_011205.1 identified by match to protein family HMM PF07690; major facilitator superfamily transporter 3789218 439851004028 SeD_A3953 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 major facilitator superfamily transporter YP_002217540.1 3788001 R 439851 CDS YP_002217541.1 198243580 3789350..3790399 1 NC_011205.1 identified by match to protein family HMM PF01594; hypothetical protein 3790399 439851004029 SeD_A3954 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217541.1 3789350 D 439851 CDS YP_002217542.1 198241809 3790451..3791029 1 NC_011205.1 identified by match to protein family HMM PF01648; holo-(acyl carrier protein) synthase 2 3791029 439851004030 SeD_A3955 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 holo-(acyl carrier protein) synthase 2 YP_002217542.1 3790451 D 439851 CDS YP_002217543.1 198242303 3791084..3791521 1 NC_011205.1 Inhibits transcription at high concentrations of nickel; nickel responsive regulator 3791521 nikR 439851004031 nikR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nickel responsive regulator YP_002217543.1 3791084 D 439851 CDS YP_002217544.1 198245680 complement(3791611..3792735) 1 NC_011205.1 identified by match to protein family HMM PF01061; ABC transporter ATP-binding protein 3792735 439851004032 SeD_A3957 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter ATP-binding protein YP_002217544.1 3791611 R 439851 CDS YP_002217545.1 198244212 complement(3795468..3796535) 1 NC_011205.1 identified by match to protein family HMM PF00529; secretion protein HlyD family protein 3796535 439851004034 SeD_A3960 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 secretion protein HlyD family protein YP_002217545.1 3795468 R 439851 CDS YP_002217546.1 198245794 3796627..3796758 1 NC_011205.1 identified by glimmer; hypothetical protein 3796758 439851004035 SeD_A3961 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217546.1 3796627 D 439851 CDS YP_002217547.1 198245160 complement(3796841..3798037) 1 NC_011205.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275; hypothetical protein 3798037 439851004036 SeD_A3962 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217547.1 3796841 R 439851 CDS YP_002217548.1 198241849 3798268..3799764 1 NC_011205.1 identified by match to protein family HMM PF01384; low-affinity inorganic phosphate transporter 2 3799764 439851004037 SeD_A3963 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 low-affinity inorganic phosphate transporter 2 YP_002217548.1 3798268 D 439851 CDS YP_002217549.1 198242496 complement(3799905..3800186) 1 NC_011205.1 ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspB 3800186 439851004038 SeD_A3964 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 universal stress protein UspB YP_002217549.1 3799905 R 439851 CDS YP_002217550.1 198245446 3800628..3801062 1 NC_011205.1 identified by match to protein family HMM PF00582; universal stress protein A 3801062 uspA 439851004039 uspA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 universal stress protein A YP_002217550.1 3800628 D 439851 CDS YP_002217551.1 198246072 3801386..3802858 1 NC_011205.1 member of the POT family of peptide transporters; probable proton-dependent peptide transporter function; inner membrane transporter YhiP 3802858 439851004040 SeD_A3966 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane transporter YhiP YP_002217551.1 3801386 D 439851 CDS YP_002217552.1 198246087 complement(3802950..3803708) 1 NC_011205.1 predicted SAM-dependent methyltransferase; methyltransferase 3803708 439851004041 SeD_A3967 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methyltransferase YP_002217552.1 3802950 R 439851 CDS YP_002217553.1 198246092 complement(3803715..3805757) 1 NC_011205.1 identified by match to protein family HMM PF01432; oligopeptidase A 3805757 439851004042 SeD_A3968 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oligopeptidase A YP_002217553.1 3803715 R 439851 CDS YP_002217554.1 198245814 complement(3805939..3807210) 1 NC_011205.1 identified by match to protein family HMM PF01569; phosphatase 3807210 439851004043 SeD_A3969 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphatase YP_002217554.1 3805939 R 439851 CDS YP_002217555.1 198242731 3807421..3808263 1 NC_011205.1 identified by match to protein family HMM PF04378; DNA utilization protein YhiR 3808263 yhiR 439851004044 yhiR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA utilization protein YhiR YP_002217555.1 3807421 D 439851 CDS YP_002217556.1 198245316 complement(3808224..3808355) 1 NC_011205.1 identified by glimmer; hypothetical protein 3808355 439851004045 SeD_A3971 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217556.1 3808224 R 439851 CDS YP_002217557.1 198241838 3808368..3809720 1 NC_011205.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 3809720 gor 439851004046 gor Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione reductase YP_002217557.1 3808368 D 439851 CDS YP_002217558.1 198244963 complement(3809767..3810810) 1 NC_011205.1 identified by match to protein family HMM PF00710; match to protein family HMM TIGR00520; L-asparaginase 3810810 439851004047 SeD_A3973 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-asparaginase YP_002217558.1 3809767 R 439851 CDS YP_002217559.1 198244751 complement(3810869..3812188) 1 NC_011205.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 3812188 439851004048 SeD_A3974 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anaerobic C4-dicarboxylate transporter YP_002217559.1 3810869 R 439851 CDS YP_002217560.1 198246147 complement(3812242..3813087) 1 NC_011205.1 identified by match to protein family HMM PF00294; PfkB domain-containing protein 3813087 439851004049 SeD_A3975 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PfkB domain-containing protein YP_002217560.1 3812242 R 439851 CDS YP_002217561.1 198245634 complement(3813151..3814125) 1 NC_011205.1 identified by match to protein family HMM PF01380; sugar isomerase 3814125 439851004050 SeD_A3976 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sugar isomerase YP_002217561.1 3813151 R 439851 CDS YP_002217562.1 198245220 complement(3814304..3815023) 1 NC_011205.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 3815023 439851004051 SeD_A3977 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GntR family transcriptional regulator YP_002217562.1 3814304 R 439851 CDS YP_002217563.1 198243471 3815349..3816998 1 NC_011205.1 cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; trehalase 3816998 treF 439851004052 treF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 trehalase YP_002217563.1 3815349 D 439851 CDS YP_002217564.1 198244567 complement(3817011..3818600) 1 NC_011205.1 inner membrane protein 3818600 439851004053 SeD_A3979 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002217564.1 3817011 R 439851 CDS YP_002217565.1 198245053 3818881..3819237 1 NC_011205.1 phage endolysin 3819237 439851004054 SeD_A3980 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phage endolysin YP_002217565.1 3818881 D 439851 CDS YP_002217566.1 198245542 complement(3819243..3819845) 1 NC_011205.1 identified by match to protein family HMM PF00196; match to protein family HMM PF01726; match to protein family HMM PF08281; transcriptional regulator 3819845 439851004055 SeD_A3981 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002217566.1 3819243 R 439851 CDS YP_002217567.1 198246047 3820473..3821375 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR substrate binding domain-containing protein 3821375 439851004056 SeD_A3982 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR substrate binding domain-containing protein YP_002217567.1 3820473 D 439851 CDS YP_002217568.1 198243309 3821448..3822476 1 NC_011205.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00766; ribonuclease 3822476 439851004057 SeD_A3983 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonuclease YP_002217568.1 3821448 D 439851 CDS YP_002217569.1 198243959 3822827..3824149 1 NC_011205.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883; MFS transporter metabolite:H+ symporter family protein 3824149 439851004058 SeD_A3984 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 MFS transporter metabolite:H+ symporter family protein YP_002217569.1 3822827 D 439851 CDS YP_002217570.1 198243449 complement(3824189..3826249) 1 NC_011205.1 identified by match to protein family HMM PF05170; AsmA family protein 3826249 439851004059 SeD_A3985 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 AsmA family protein YP_002217570.1 3824189 R 439851 CDS YP_002217571.1 198244087 complement(3826359..3827126) 1 NC_011205.1 in Escherichia coli this protein is involved in flagellar function; EAL domain-containing protein 3827126 439851004060 SeD_A3986 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 EAL domain-containing protein YP_002217571.1 3826359 R 439851 CDS YP_002217572.1 198244991 complement(3827185..3827301) 1 NC_011205.1 identified by glimmer; hypothetical protein 3827301 439851004061 SeD_A3987 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217572.1 3827185 R 439851 CDS YP_002217573.1 198242408 complement(3828338..3829783) 1 NC_011205.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; hypothetical protein 3829783 439851004063 SeD_A3989 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217573.1 3828338 R 439851 CDS YP_002217574.1 198246012 complement(3830045..3831331) 1 NC_011205.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 3831331 dctA 439851004064 dctA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 C4-dicarboxylate transporter DctA YP_002217574.1 3830045 R 439851 CDS YP_002217575.1 198242458 complement(3831489..3833495) 1 NC_011205.1 HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; similar to a phosphodiesterase protein from E. coli; phosphodiesterase 3833495 439851004065 SeD_A3991 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphodiesterase YP_002217575.1 3831489 R 439851 CDS YP_002217576.1 198241977 complement(3833669..3837211) 1 NC_011205.1 cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; cellulose synthase subunit BcsC 3837211 439851004066 SeD_A3992 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cellulose synthase subunit BcsC YP_002217576.1 3833669 R 439851 CDS YP_002217577.1 198244736 complement(3837193..3838302) 1 NC_011205.1 catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase 3838302 bcsZ 439851004067 bcsZ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 endo-1,4-D-glucanase YP_002217577.1 3837193 R 439851 CDS YP_002217578.1 198244249 complement(3838306..3840606) 1 NC_011205.1 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein 3840606 bcsB 439851004068 bcsB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cellulose synthase regulator protein YP_002217578.1 3838306 R 439851 CDS YP_002217579.1 198245795 complement(3840617..3843241) 1 NC_011205.1 polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; cellulose synthase catalytic subunit 3843241 bcsA 439851004069 bcsA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cellulose synthase catalytic subunit YP_002217579.1 3840617 R 439851 CDS YP_002217580.1 198245229 complement(3843238..3843990) 1 NC_011205.1 identified by match to protein family HMM PF06564; cell division protein 3843990 439851004070 SeD_A3996 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cell division protein YP_002217580.1 3843238 R 439851 CDS YP_002217581.1 198242859 complement(3843991..3844194) 1 NC_011205.1 hypothetical protein 3844194 439851004071 SeD_A3997 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217581.1 3843991 R 439851 CDS YP_002217582.1 198242262 3844305..3844418 1 NC_011205.1 identified by glimmer; hypothetical protein 3844418 439851004072 SeD_A3998 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217582.1 3844305 D 439851 CDS YP_002217583.1 198245216 3844451..3846010 1 NC_011205.1 hypothetical protein 3846010 439851004073 SeD_A3999 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217583.1 3844451 D 439851 CDS YP_002217584.1 198242472 3846007..3846198 1 NC_011205.1 hypothetical protein 3846198 439851004074 SeD_A4000 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217584.1 3846007 D 439851 CDS YP_002217585.1 198246095 3846195..3847874 1 NC_011205.1 endoglucanase BcsG 3847874 439851004075 SeD_A4001 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 endoglucanase BcsG YP_002217585.1 3846195 D 439851 CDS YP_002217586.1 198244930 3848448..3848588 1 NC_011205.1 hypothetical protein 3848588 439851004078 SeD_A4004 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217586.1 3848448 D 439851 CDS YP_002217587.1 198241854 3848706..3850004 1 NC_011205.1 inner membrane transport protein YhaO 3850004 439851004079 SeD_A4005 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane transport protein YhaO YP_002217587.1 3848706 D 439851 CDS YP_002217588.1 198243967 complement(3850105..3851118) 1 NC_011205.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit 3851118 dppF 439851004080 dppF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dipeptide transporter ATP-binding subunit YP_002217588.1 3850105 R 439851 CDS YP_002217589.1 198246011 complement(3851115..3852098) 1 NC_011205.1 DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; dipeptide transporter ATP-binding subunit 3852098 dppD 439851004081 dppD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dipeptide transporter ATP-binding subunit YP_002217589.1 3851115 R 439851 CDS YP_002217590.1 198245574 complement(3852109..3853011) 1 NC_011205.1 identified by match to protein family HMM PF00528; dipeptide transporter 3853011 dppC 439851004082 dppC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dipeptide transporter YP_002217590.1 3852109 R 439851 CDS YP_002217591.1 198244490 complement(3853021..3854040) 1 NC_011205.1 transports peptides consisting of two or three amino acids; dipeptide transporter permease DppB 3854040 dppB 439851004083 dppB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dipeptide transporter permease DppB YP_002217591.1 3853021 R 439851 CDS YP_002217592.1 198246114 complement(3854197..3855777) 1 NC_011205.1 identified by match to protein family HMM PF00496; dipeptide ABC transporter periplasmic dipeptide-binding protein 3855777 dppA 439851004084 dppA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dipeptide ABC transporter periplasmic dipeptide-binding protein YP_002217592.1 3854197 R 439851 CDS YP_002217593.1 198243183 complement(3856360..3857685) 1 NC_011205.1 identified by match to protein family HMM PF00860; xanthine/uracil/vitamin C permease 3857685 439851004085 SeD_A4011 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 xanthine/uracil/vitamin C permease YP_002217593.1 3856360 R 439851 CDS YP_002217594.1 198244278 complement(3857743..3858867) 1 NC_011205.1 hypothetical protein 3858867 439851004086 SeD_A4012 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217594.1 3857743 R 439851 CDS YP_002217595.1 198241987 3858920..3859033 1 NC_011205.1 identified by glimmer; hypothetical protein 3859033 439851004087 SeD_A4013 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217595.1 3858920 D 439851 CDS YP_002217596.1 198243857 3859017..3860024 1 NC_011205.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; regulatory protein LacI:Periplasmic binding protein/LacI transcriptional regulator 3860024 439851004088 SeD_A4014 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 regulatory protein LacI:Periplasmic binding protein/LacI transcriptional regulator YP_002217596.1 3859017 D 439851 CDS YP_002217597.1 198245589 complement(3860505..3862196) 1 NC_011205.1 catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; phosphoethanolamine transferase 3862196 439851004091 SeD_A4017 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoethanolamine transferase YP_002217597.1 3860505 R 439851 CDS YP_002217598.1 198242861 complement(3862414..3862941) 1 NC_011205.1 identified by match to protein family HMM PF00419; hypothetical protein 3862941 439851004092 SeD_A4018 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217598.1 3862414 R 439851 CDS YP_002217599.1 198243137 complement(3866594..3867292) 1 NC_011205.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; gram-negative pili assembly chaperone, N- domain 3867292 439851004096 SeD_A4022 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gram-negative pili assembly chaperone, N- domain YP_002217599.1 3866594 R 439851 CDS YP_002217600.1 198242363 complement(3867377..3867901) 1 NC_011205.1 identified by match to protein family HMM PF00419; long polar fimbria protein A 3867901 439851004097 SeD_A4023 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 long polar fimbria protein A YP_002217600.1 3867377 R 439851 CDS YP_002217601.1 198241858 complement(3868410..3869114) 1 NC_011205.1 lipase 3869114 439851004098 SeD_A4024 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipase YP_002217601.1 3868410 R 439851 CDS YP_002217602.1 198242393 3869271..3869852 1 NC_011205.1 constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine; 3-methyl-adenine DNA glycosylase I 3869852 439851004099 SeD_A4025 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-methyl-adenine DNA glycosylase I YP_002217602.1 3869271 D 439851 CDS YP_002217603.1 198246246 3869830..3870270 1 NC_011205.1 identified by match to protein family HMM PF00583; hypothetical protein 3870270 439851004100 SeD_A4026 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217603.1 3869830 D 439851 CDS YP_002217604.1 198241743 complement(3870239..3872572) 1 NC_011205.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR00509; biotin sulfoxide reductase 3872572 439851004101 SeD_A4027 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 biotin sulfoxide reductase YP_002217604.1 3870239 R 439851 CDS YP_002217605.1 198245549 3872725..3873387 1 NC_011205.1 identified by match to protein family HMM PF00691; match to protein family HMM PF05433; outer membrane lipoprotein 3873387 439851004102 SeD_A4028 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane lipoprotein YP_002217605.1 3872725 D 439851 CDS YP_002217606.1 198244955 3873606..3874580 1 NC_011205.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; 2-ketogluconate reductase 3874580 439851004103 SeD_A4029 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-ketogluconate reductase YP_002217606.1 3873606 D 439851 CDS YP_002217607.1 198243849 complement(3874630..3875340) 1 NC_011205.1 hypothetical protein 3875340 439851004104 SeD_A4030 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217607.1 3874630 R 439851 CDS YP_002217608.1 198242844 complement(3875490..3875621) 1 NC_011205.1 identified by glimmer; hypothetical protein 3875621 439851004105 SeD_A4031 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217608.1 3875490 R 439851 CDS YP_002217609.1 198242224 3875779..3876069 1 NC_011205.1 transcriptional regulator 3876069 439851004106 SeD_A4032 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002217609.1 3875779 D 439851 CDS YP_002217610.1 198241852 3876357..3876569 1 NC_011205.1 identified by match to protein family HMM PF00313; major cold shock protein 3876569 439851004107 SeD_A4033 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 major cold shock protein YP_002217610.1 3876357 D 439851 CDS YP_002217611.1 198245734 3876743..3877282 1 NC_011205.1 hypothetical protein 3877282 439851004108 SeD_A4034 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217611.1 3876743 D 439851 CDS YP_002217612.1 198245992 complement(3878126..3878392) 1 NC_011205.1 identified by match to protein family HMM PF08681; hypothetical protein 3878392 439851004109 SeD_A4035 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217612.1 3878126 R 439851 CDS YP_002217613.1 198244903 complement(3880018..3882087) 1 NC_011205.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 3882087 glyS 439851004111 glyS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycyl-tRNA synthetase subunit beta YP_002217613.1 3880018 R 439851 CDS YP_002217614.1 198244424 complement(3882097..3883008) 1 NC_011205.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 3883008 glyQ 439851004112 glyQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycyl-tRNA synthetase subunit alpha YP_002217614.1 3882097 R 439851 CDS YP_002217615.1 198243630 complement(3883147..3883449) 1 NC_011205.1 hypothetical protein 3883449 439851004113 SeD_A4039 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217615.1 3883147 R 439851 CDS YP_002217616.1 198241744 3883615..3884610 1 NC_011205.1 identified by match to protein family HMM PF01757; acyltransferase 3884610 439851004114 SeD_A4040 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acyltransferase YP_002217616.1 3883615 D 439851 CDS YP_002217617.1 198242267 complement(3884633..3884986) 1 NC_011205.1 identified by match to protein family HMM PF05360; hypothetical protein 3884986 439851004115 SeD_A4041 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217617.1 3884633 R 439851 CDS YP_002217618.1 198242765 complement(3885017..3885154) 1 NC_011205.1 identified by glimmer; hypothetical protein 3885154 439851004116 SeD_A4042 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217618.1 3885017 R 439851 CDS YP_002217619.1 198245798 complement(3885161..3886615) 1 NC_011205.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312; xylulokinase 3886615 xylB 439851004117 xylB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 xylulokinase YP_002217619.1 3885161 R 439851 CDS YP_002217620.1 198241789 complement(3886715..3888037) 1 NC_011205.1 catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 3888037 xylA 439851004118 xylA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 xylose isomerase YP_002217620.1 3886715 R 439851 CDS YP_002217621.1 198244615 3888400..3889578 1 NC_011205.1 identified by match to protein family HMM PF00165; xylose operon regulatory protein 3889578 439851004119 SeD_A4045 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 xylose operon regulatory protein YP_002217621.1 3888400 D 439851 CDS YP_002217622.1 198245253 complement(3889639..3890562) 1 NC_011205.1 identified by match to protein family HMM PF01832; hypothetical protein 3890562 bax 439851004120 bax Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217622.1 3889639 R 439851 CDS YP_002217623.1 198243963 complement(3890593..3890727) 1 NC_011205.1 identified by glimmer; hypothetical protein 3890727 439851004121 SeD_A4047 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217623.1 3890593 R 439851 CDS YP_002217624.1 198244327 3890779..3892806 1 NC_011205.1 periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds; periplasmic alpha-amylase precursor 3892806 malS 439851004122 malS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 periplasmic alpha-amylase precursor YP_002217624.1 3890779 D 439851 CDS YP_002217625.1 198242924 3892980..3894230 1 NC_011205.1 transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase 3894230 avtA 439851004123 avtA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 valine--pyruvate transaminase YP_002217625.1 3892980 D 439851 CDS YP_002217626.1 198244915 complement(3894267..3894740) 1 NC_011205.1 identified by match to protein family HMM PF00037; hypothetical protein 3894740 439851004124 SeD_A4050 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217626.1 3894267 R 439851 CDS YP_002217627.1 198245662 complement(3894857..3895657) 1 NC_011205.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339; HTH-type transcriptional regulator YiaJ 3895657 439851004125 SeD_A4051 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 HTH-type transcriptional regulator YiaJ YP_002217627.1 3894857 R 439851 CDS YP_002217628.1 198246080 complement(3895722..3895868) 1 NC_011205.1 identified by glimmer; hypothetical protein 3895868 439851004126 SeD_A4052 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217628.1 3895722 R 439851 CDS YP_002217629.1 198244331 3895887..3896885 1 NC_011205.1 NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; 2,3-diketo-L-gulonate reductase 3896885 439851004127 SeD_A4053 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2,3-diketo-L-gulonate reductase YP_002217629.1 3895887 D 439851 CDS YP_002217630.1 198245361 3896897..3897361 1 NC_011205.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 3897361 439851004128 SeD_A4054 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217630.1 3896897 D 439851 CDS YP_002217631.1 198243596 3897385..3898317 1 NC_011205.1 hypothetical protein 3898317 439851004129 SeD_A4055 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217631.1 3897385 D 439851 CDS YP_002217632.1 198244111 3898456..3898929 1 NC_011205.1 membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO; 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM 3898929 439851004130 SeD_A4056 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM YP_002217632.1 3898456 D 439851 CDS YP_002217633.1 198242335 3898932..3900209 1 NC_011205.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; 2,3-diketo-l-gulonate trap transporter large permease yian 3900209 439851004131 SeD_A4057 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2,3-diketo-l-gulonate trap transporter large permease yian YP_002217633.1 3898932 D 439851 CDS YP_002217634.1 198244332 3900221..3901207 1 NC_011205.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; trap dicarboxylate transporter DctP subunit 3901207 439851004132 SeD_A4058 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 trap dicarboxylate transporter DctP subunit YP_002217634.1 3900221 D 439851 CDS YP_002217635.1 198242694 3901211..3902707 1 NC_011205.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; L-xylulose/3-keto-L-gulonate kinase 3902707 439851004133 SeD_A4059 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-xylulose/3-keto-L-gulonate kinase YP_002217635.1 3901211 D 439851 CDS YP_002217636.1 198245769 3902704..3903366 1 NC_011205.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate; 3-keto-L-gulonate-6-phosphate decarboxylase 3903366 sgbH 439851004134 sgbH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-keto-L-gulonate-6-phosphate decarboxylase YP_002217636.1 3902704 D 439851 CDS YP_002217637.1 198245425 3903359..3904219 1 NC_011205.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; L-xylulose 5-phosphate 3-epimerase 3904219 439851004135 SeD_A4061 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-xylulose 5-phosphate 3-epimerase YP_002217637.1 3903359 D 439851 CDS YP_002217638.1 198246054 3904213..3904908 1 NC_011205.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 3904908 sgbE 439851004136 sgbE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-ribulose-5-phosphate 4-epimerase YP_002217638.1 3904213 D 439851 CDS YP_002217639.1 198241882 complement(3905069..3905884) 1 NC_011205.1 identified by match to protein family HMM PF00165; transcriptional regulator 3905884 439851004137 SeD_A4063 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002217639.1 3905069 R 439851 CDS YP_002217640.1 198242542 3906148..3908103 1 NC_011205.1 identified by match to protein family HMM PF07944; hypothetical protein 3908103 439851004138 SeD_A4064 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217640.1 3906148 D 439851 CDS YP_002217641.1 198244766 complement(3908221..3909759) 1 NC_011205.1 identified by match to protein family HMM PF00171; aldehyde dehydrogenase 3909759 aldB 439851004139 aldB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aldehyde dehydrogenase YP_002217641.1 3908221 R 439851 CDS YP_002217642.1 198244290 3909928..3910809 1 NC_011205.1 identified by match to protein family HMM PF00480; transcriptional regulator 3910809 439851004140 SeD_A4066 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002217642.1 3909928 D 439851 CDS YP_002217643.1 198243798 complement(3911094..3912944) 1 NC_011205.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF09106; match to protein family HMM PF09107; match to protein family HMM TIGR00475; selenocysteinyl-tRNA-specific translation factor 3912944 selB 439851004141 selB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 selenocysteinyl-tRNA-specific translation factor YP_002217643.1 3911094 R 439851 CDS YP_002217644.1 198243304 complement(3912941..3914332) 1 NC_011205.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 3914332 selA 439851004142 selA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 selenocysteine synthase YP_002217644.1 3912941 R 439851 CDS YP_002217645.1 198242045 complement(3914431..3915039) 1 NC_011205.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 3915039 439851004143 SeD_A4069 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione S-transferase YP_002217645.1 3914431 R 439851 CDS YP_002217646.1 198244431 3915515..3917431 1 NC_011205.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851; PTS system mannitol-specific transporter subunit EIICBA 3917431 439851004144 SeD_A4070 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system mannitol-specific transporter subunit EIICBA YP_002217646.1 3915515 D 439851 CDS YP_002217647.1 198243537 3917662..3918810 1 NC_011205.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125; mannitol-1-phosphate 5-dehydrogenase 3918810 mtlD 439851004145 mtlD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 mannitol-1-phosphate 5-dehydrogenase YP_002217647.1 3917662 D 439851 CDS YP_002217648.1 198243447 3918807..3919397 1 NC_011205.1 Acts as a repressor of the mtlAD operon; mannitol repressor protein 3919397 mtlR 439851004146 mtlR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 mannitol repressor protein YP_002217648.1 3918807 D 439851 CDS YP_002217649.1 198242533 complement(3919407..3919616) 1 NC_011205.1 hypothetical protein 3919616 439851004147 SeD_A4073 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217649.1 3919407 R 439851 CDS YP_002217650.1 198241887 3919907..3920269 1 NC_011205.1 hypothetical protein 3920269 439851004148 SeD_A4074 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217650.1 3919907 D 439851 CDS YP_002217651.1 198243889 3920350..3920511 1 NC_011205.1 identified by glimmer; hypothetical protein 3920511 439851004149 SeD_A4075 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217651.1 3920350 D 439851 CDS YP_002217652.1 198243425 3920757..3921440 1 NC_011205.1 inner membrane lipoprotein 3921440 439851004150 SeD_A4076 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane lipoprotein YP_002217652.1 3920757 D 439851 CDS YP_002217653.1 198242645 3921484..3925512 1 NC_011205.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662; autotransporter 3925512 439851004151 SeD_A4077 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 autotransporter YP_002217653.1 3921484 D 439851 CDS YP_002217654.1 198242134 3925811..3927466 1 NC_011205.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate permease 3927466 lldP 439851004152 lldP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-lactate permease YP_002217654.1 3925811 D 439851 CDS YP_002217655.1 198245292 3927463..3928239 1 NC_011205.1 represses the lctPRD operon; DNA-binding transcriptional repressor LldR 3928239 439851004153 SeD_A4079 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional repressor LldR YP_002217655.1 3927463 D 439851 CDS YP_002217656.1 198243712 3928236..3929426 1 NC_011205.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 3929426 lldD 439851004154 lldD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-lactate dehydrogenase YP_002217656.1 3928236 D 439851 CDS YP_002217657.1 198243676 3929490..3929963 1 NC_011205.1 member of the SPOUT superfamily of RNA methyltransferases; no methyltransferase activity observed with certain tRNA substrates; tRNA/rRNA methyltransferase YibK 3929963 439851004155 SeD_A4081 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA/rRNA methyltransferase YibK YP_002217657.1 3929490 D 439851 CDS YP_002217658.1 198244852 complement(3930031..3931086) 1 NC_011205.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator 3931086 439851004156 SeD_A4082 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LacI family transcriptional regulator YP_002217658.1 3930031 R 439851 CDS YP_002217659.1 198244336 3931354..3932550 1 NC_011205.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing enzyme 3932550 439851004157 SeD_A4083 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 mandelate racemase/muconate lactonizing enzyme YP_002217659.1 3931354 D 439851 CDS YP_002217660.1 198246157 3932624..3933934 1 NC_011205.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00893; glucarate transporter 3933934 439851004158 SeD_A4084 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucarate transporter YP_002217660.1 3932624 D 439851 CDS YP_002217661.1 198246155 complement(3934017..3934838) 1 NC_011205.1 catalyzes the O-acetylation of serine; serine acetyltransferase 3934838 cysE 439851004159 cysE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 serine acetyltransferase YP_002217661.1 3934017 R 439851 CDS YP_002217662.1 198245670 complement(3934916..3935935) 1 NC_011205.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 3935935 gpsA 439851004160 gpsA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_002217662.1 3934916 R 439851 CDS YP_002217663.1 198242307 complement(3935935..3936402) 1 NC_011205.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 3936402 secB 439851004161 secB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 preprotein translocase subunit SecB YP_002217663.1 3935935 R 439851 CDS YP_002217664.1 198241846 complement(3936446..3936697) 1 NC_011205.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181; glutaredoxin 3 3936697 grxC 439851004162 grxC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutaredoxin 3 YP_002217664.1 3936446 R 439851 CDS YP_002217665.1 198245197 complement(3936784..3937215) 1 NC_011205.1 identified by match to protein family HMM PF00581; rhodanese domain-containing protein 3937215 439851004163 SeD_A4089 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 rhodanese domain-containing protein YP_002217665.1 3936784 R 439851 CDS YP_002217666.1 198245019 3937463..3939007 1 NC_011205.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 3939007 gpmI 439851004164 gpmI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoglyceromutase YP_002217666.1 3937463 D 439851 CDS YP_002217667.1 198244864 3939017..3940300 1 NC_011205.1 identified by match to protein family HMM PF01551; hypothetical protein 3940300 439851004165 SeD_A4091 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217667.1 3939017 D 439851 CDS YP_002217668.1 198245856 3940304..3941266 1 NC_011205.1 identified by match to protein family HMM PF04748; divergent polysaccharide deacetylase 3941266 439851004166 SeD_A4092 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 divergent polysaccharide deacetylase YP_002217668.1 3940304 D 439851 CDS YP_002217669.1 198244256 complement(3941253..3942287) 1 NC_011205.1 identified by match to protein family HMM PF00535; glycosyl transferase 3942287 439851004167 SeD_A4093 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycosyl transferase YP_002217669.1 3941253 R 439851 CDS YP_002217670.1 198245172 complement(3942581..3943606) 1 NC_011205.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 3943606 tdh 439851004168 tdh Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-threonine 3-dehydrogenase YP_002217670.1 3942581 R 439851 CDS YP_002217671.1 198241773 complement(3943616..3944812) 1 NC_011205.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate CoA ligase 3944812 kbl 439851004169 kbl Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-amino-3-ketobutyrate CoA ligase YP_002217671.1 3943616 R 439851 CDS YP_002217672.1 198242181 3945015..3945947 1 NC_011205.1 catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase 3945947 rfaD 439851004170 rfaD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ADP-L-glycero-D-manno-heptose-6-epimerase YP_002217672.1 3945015 D 439851 CDS YP_002217673.1 198243825 3945950..3946996 1 NC_011205.1 catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose:LPS heptosyltransferase II 3946996 rfaF 439851004171 rfaF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ADP-heptose:LPS heptosyltransferase II YP_002217673.1 3945950 D 439851 CDS YP_002217674.1 198243192 3946996..3947949 1 NC_011205.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193; ADP-heptose:LPS heptosyl transferase I 3947949 rfaC 439851004172 rfaC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ADP-heptose:LPS heptosyl transferase I YP_002217674.1 3946996 D 439851 CDS YP_002217675.1 198245607 3947989..3949203 1 NC_011205.1 identified by match to protein family HMM PF04932; O-antigen ligase 3949203 439851004173 SeD_A4099 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 O-antigen ligase YP_002217675.1 3947989 D 439851 CDS YP_002217676.1 198244660 complement(3949261..3950406) 1 NC_011205.1 identified by match to protein family HMM PF00534; lipopolysaccharide 1,2-N-acetylglucosaminetransferase 3950406 439851004174 SeD_A4100 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipopolysaccharide 1,2-N-acetylglucosaminetransferase YP_002217676.1 3949261 R 439851 CDS YP_002217677.1 198246101 complement(3951464..3952162) 1 NC_011205.1 identified by match to protein family HMM PF06176; lipopolysaccharide core biosynthesis protein 3952162 439851004176 SeD_A4103 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipopolysaccharide core biosynthesis protein YP_002217677.1 3951464 R 439851 CDS YP_002217678.1 198242856 complement(3952185..3953198) 1 NC_011205.1 identified by match to protein family HMM PF01501; match to protein family HMM PF08437; lipopolysaccharide 1,2-glucosyltransferase 3953198 439851004177 SeD_A4104 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipopolysaccharide 1,2-glucosyltransferase YP_002217678.1 3952185 R 439851 CDS YP_002217679.1 198245583 complement(3953216..3954229) 1 NC_011205.1 identified by match to protein family HMM PF01501; match to protein family HMM PF08437; lipopolysaccharide 1,3-galactosyltransferase 3954229 439851004178 SeD_A4105 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipopolysaccharide 1,3-galactosyltransferase YP_002217679.1 3953216 R 439851 CDS YP_002217680.1 198241819 complement(3954235..3955314) 1 NC_011205.1 identified by match to protein family HMM PF00534; UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase 3955314 439851004179 SeD_A4106 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase YP_002217680.1 3954235 R 439851 CDS YP_002217681.1 198242316 complement(3955384..3955593) 1 NC_011205.1 hypothetical protein 3955593 439851004180 SeD_A4107 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217681.1 3955384 R 439851 CDS YP_002217682.1 198244597 complement(3955649..3956446) 1 NC_011205.1 identified by match to protein family HMM PF06293; lipopolysaccharide core biosynthesis protein 3956446 439851004181 SeD_A4108 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipopolysaccharide core biosynthesis protein YP_002217682.1 3955649 R 439851 CDS YP_002217683.1 198243128 complement(3956439..3957563) 1 NC_011205.1 identified by match to protein family HMM PF00534; lipopolysaccharide core biosynthesis protein RfaG 3957563 439851004182 SeD_A4109 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipopolysaccharide core biosynthesis protein RfaG YP_002217683.1 3956439 R 439851 CDS YP_002217684.1 198246122 complement(3957560..3958630) 1 NC_011205.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02201; lipopolysaccharide core biosynthesis protein 3958630 439851004183 SeD_A4110 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipopolysaccharide core biosynthesis protein YP_002217684.1 3957560 R 439851 CDS YP_002217685.1 198245637 3959039..3960316 1 NC_011205.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 3960316 waaA 439851004184 waaA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-deoxy-D-manno-octulosonic-acid transferase YP_002217685.1 3959039 D 439851 CDS YP_002217686.1 198242346 3960325..3960804 1 NC_011205.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 3960804 coaD 439851004185 coaD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphopantetheine adenylyltransferase YP_002217686.1 3960325 D 439851 CDS YP_002217687.1 198241869 complement(3960832..3961641) 1 NC_011205.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 3961641 mutM 439851004186 mutM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formamidopyrimidine-DNA glycosylase YP_002217687.1 3960832 R 439851 CDS YP_002217688.1 198243133 complement(3961739..3961906) 1 NC_011205.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 3961906 rpmG 439851004187 rpmG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L33 YP_002217688.1 3961739 R 439851 CDS YP_002217689.1 198242068 complement(3961927..3962163) 1 NC_011205.1 required for 70S ribosome assembly; 50S ribosomal protein L28 3962163 rpmB 439851004188 rpmB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L28 YP_002217689.1 3961927 R 439851 CDS YP_002217690.1 198244011 complement(3962381..3963046) 1 NC_011205.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 3963046 radC 439851004189 radC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA repair protein RadC YP_002217690.1 3962381 R 439851 CDS YP_002217691.1 198245176 3964420..3964878 1 NC_011205.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 3964878 dut 439851004191 dut Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_002217691.1 3964420 D 439851 CDS YP_002217692.1 198245097 3964986..3965582 1 NC_011205.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 3965582 slmA 439851004192 slmA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nucleoid occlusion protein YP_002217692.1 3964986 D 439851 CDS YP_002217693.1 198242799 complement(3965660..3966301) 1 NC_011205.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 3966301 pyrE 439851004193 pyrE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 orotate phosphoribosyltransferase YP_002217693.1 3965660 R 439851 CDS YP_002217694.1 198242269 complement(3966380..3967096) 1 NC_011205.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 3967096 rph 439851004194 rph Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonuclease PH YP_002217694.1 3966380 R 439851 CDS YP_002217695.1 198245721 3967222..3968085 1 NC_011205.1 identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255; hypothetical protein 3968085 439851004195 SeD_A4122 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217695.1 3967222 D 439851 CDS YP_002217696.1 198245206 complement(3968135..3969037) 1 NC_011205.1 identified by match to protein family HMM PF00126; LysR family transcriptional regulator 3969037 439851004196 SeD_A4123 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR family transcriptional regulator YP_002217696.1 3968135 R 439851 CDS YP_002217697.1 198243289 3969111..3969992 1 NC_011205.1 identified by match to protein family HMM PF00753; beta-lactamase 3969992 439851004197 SeD_A4124 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 beta-lactamase YP_002217697.1 3969111 D 439851 CDS YP_002217698.1 198243631 3970243..3970860 1 NC_011205.1 identified by match to protein family HMM PF03458; hypothetical protein 3970860 439851004198 SeD_A4125 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217698.1 3970243 D 439851 CDS YP_002217699.1 198244266 complement(3970857..3972542) 1 NC_011205.1 this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB 3972542 ligB 439851004199 ligB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NAD-dependent DNA ligase LigB YP_002217699.1 3970857 R 439851 CDS YP_002217700.1 198243873 3972799..3973422 1 NC_011205.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 3973422 gmk 439851004200 gmk Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 guanylate kinase YP_002217700.1 3972799 D 439851 CDS YP_002217701.1 198245119 3973477..3973752 1 NC_011205.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3973752 rpoZ 439851004201 rpoZ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-directed RNA polymerase subunit omega YP_002217701.1 3973477 D 439851 CDS YP_002217702.1 198242508 3973771..3975882 1 NC_011205.1 identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3975882 439851004202 SeD_A4129 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_002217702.1 3973771 D 439851 CDS YP_002217703.1 198245054 3975887..3976576 1 NC_011205.1 specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 3976576 trmH 439851004203 trmH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA guanosine-2'-O-methyltransferase YP_002217703.1 3975887 D 439851 CDS YP_002217704.1 198244513 3976582..3978663 1 NC_011205.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 3978663 recG 439851004204 recG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent DNA helicase RecG YP_002217704.1 3976582 D 439851 CDS YP_002217705.1 198246017 complement(3978699..3979904) 1 NC_011205.1 identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210; sodium/glutamate symporter 3979904 gltS 439851004205 gltS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sodium/glutamate symporter YP_002217705.1 3978699 R 439851 CDS YP_002217706.1 198245538 3980132..3981523 1 NC_011205.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil-xanthine permease 3981523 439851004206 SeD_A4133 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 uracil-xanthine permease YP_002217706.1 3980132 D 439851 CDS YP_002217707.1 198241994 3981644..3983353 1 NC_011205.1 identified by match to protein family HMM PF05170; AsmA family protein 3983353 439851004207 SeD_A4134 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 AsmA family protein YP_002217707.1 3981644 D 439851 CDS YP_002217708.1 198246042 complement(3983456..3985774) 1 NC_011205.1 catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides; alpha-xylosidase YicI 3985774 439851004208 SeD_A4135 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 alpha-xylosidase YicI YP_002217708.1 3983456 R 439851 CDS YP_002217709.1 198243452 3987659..3987784 1 NC_011205.1 identified by glimmer; hypothetical protein 3987784 439851004212 SeD_A4139 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217709.1 3987659 D 439851 CDS YP_002217710.1 198243943 complement(3987866..3988210) 1 NC_011205.1 hypothetical protein 3988210 439851004213 SeD_A4140 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217710.1 3987866 R 439851 CDS YP_002217711.1 198243175 3990607..3991644 1 NC_011205.1 virulence protein 3991644 439851004217 SeD_A4145 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 virulence protein YP_002217711.1 3990607 D 439851 CDS YP_002217712.1 198243871 complement(3991756..3991929) 1 NC_011205.1 ISxac3 transposase 3991929 439851004218 SeD_A4146 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ISxac3 transposase YP_002217712.1 3991756 R 439851 CDS YP_002217713.1 198244742 3992943..3993560 1 NC_011205.1 RmbA 3993560 439851004219 SeD_A4147 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RmbA YP_002217713.1 3992943 D 439851 CDS YP_002217714.1 198245016 complement(3996597..3997079) 1 NC_011205.1 inner membrane protein 3997079 439851004221 SeD_A4149 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002217714.1 3996597 R 439851 CDS YP_002217715.1 198243951 complement(3998497..3998610) 1 NC_011205.1 identified by glimmer; hypothetical protein 3998610 439851004224 SeD_A4152 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217715.1 3998497 R 439851 CDS YP_002217716.1 198242173 3998712..3999392 1 NC_011205.1 identified by match to protein family HMM PF00857; hypothetical protein 3999392 439851004225 SeD_A4153 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217716.1 3998712 D 439851 CDS YP_002217717.1 198242623 complement(3999560..4000087) 1 NC_011205.1 inner membrane protein 4000087 439851004226 SeD_A4154 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002217717.1 3999560 R 439851 CDS YP_002217718.1 198245240 complement(4000354..4003080) 1 NC_011205.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524; magnesium-translocating P-type ATPase 4003080 mgtA 439851004227 mgtA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 magnesium-translocating P-type ATPase YP_002217718.1 4000354 R 439851 CDS YP_002217719.1 198245749 4003179..4003292 1 NC_011205.1 identified by glimmer; hypothetical protein 4003292 439851004228 SeD_A4156 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217719.1 4003179 D 439851 CDS YP_002217720.1 198244236 complement(4003300..4003977) 1 NC_011205.1 identified by match to protein family HMM PF02308; hypothetical protein 4003977 439851004229 SeD_A4157 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217720.1 4003300 R 439851 CDS YP_002217721.1 198244739 4004459..4005406 1 NC_011205.1 identified by match to protein family HMM PF00892; match to protein family HMM TIGR00950; carboxylate/amino acid/amine transporter 4005406 439851004230 SeD_A4158 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 carboxylate/amino acid/amine transporter YP_002217721.1 4004459 D 439851 CDS YP_002217722.1 198243285 complement(4005449..4006390) 1 NC_011205.1 identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784; hypothetical protein 4006390 439851004231 SeD_A4159 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217722.1 4005449 R 439851 CDS YP_002217723.1 198243788 complement(4006626..4007369) 1 NC_011205.1 identified by match to protein family HMM PF07071; 2-dehydro-3-deoxyphosphooctonate aldolase 4007369 439851004232 SeD_A4160 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-dehydro-3-deoxyphosphooctonate aldolase YP_002217723.1 4006626 R 439851 CDS YP_002217724.1 198243833 complement(4007356..4008465) 1 NC_011205.1 identified by match to protein family HMM PF03841; match to protein family HMM TIGR01437; pyridoxal phosphate-dependent enzyme 4008465 439851004233 SeD_A4161 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pyridoxal phosphate-dependent enzyme YP_002217724.1 4007356 R 439851 CDS YP_002217725.1 198244306 complement(4008469..4009329) 1 NC_011205.1 identified by match to protein family HMM PF03613; PTS system mannose/fructose/sorbose family transporter subunit IID 4009329 439851004234 SeD_A4162 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system mannose/fructose/sorbose family transporter subunit IID YP_002217725.1 4008469 R 439851 CDS YP_002217726.1 198244602 complement(4009326..4010075) 1 NC_011205.1 identified by match to protein family HMM PF03609; PTS system sorbose-specific transporter subunit IIC 4010075 439851004235 SeD_A4163 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system sorbose-specific transporter subunit IIC YP_002217726.1 4009326 R 439851 CDS YP_002217727.1 198245354 complement(4010221..4010706) 1 NC_011205.1 identified by match to protein family HMM PF03830; PTS system sorbose subfamily transporter subunit IIB 4010706 439851004236 SeD_A4164 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system sorbose subfamily transporter subunit IIB YP_002217727.1 4010221 R 439851 CDS YP_002217728.1 198246138 complement(4010717..4011142) 1 NC_011205.1 identified by match to protein family HMM PF03610; PTS system fructose transporter subunit IIA 4011142 439851004237 SeD_A4165 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system fructose transporter subunit IIA YP_002217728.1 4010717 R 439851 CDS YP_002217729.1 198243374 4014213..4014506 1 NC_011205.1 hypothetical protein 4014506 439851004240 SeD_A4169 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217729.1 4014213 D 439851 CDS YP_002217730.1 198243991 4014491..4014634 1 NC_011205.1 identified by glimmer; hypothetical protein 4014634 439851004241 SeD_A4170 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217730.1 4014491 D 439851 CDS YP_002217731.1 198243944 4014612..4015994 1 NC_011205.1 identified by match to protein family HMM PF00232; beta-glucosidase 4015994 439851004242 SeD_A4171 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 beta-glucosidase YP_002217731.1 4014612 D 439851 CDS YP_002217732.1 198242686 4017418..4017822 1 NC_011205.1 identified by match to protein family HMM PF06296; hypothetical protein 4017822 439851004244 SeD_A4173 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217732.1 4017418 D 439851 CDS YP_002217733.1 198245636 4017806..4018129 1 NC_011205.1 DNA-binding protein 4018129 439851004245 SeD_A4174 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding protein YP_002217733.1 4017806 D 439851 CDS YP_002217734.1 198245315 complement(4018562..4019014) 1 NC_011205.1 identified by match to protein family HMM PF06711; hypothetical protein 4019014 439851004246 SeD_A4175 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217734.1 4018562 R 439851 CDS YP_002217735.1 198244401 complement(4019207..4020598) 1 NC_011205.1 cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter 4020598 uhpT 439851004247 uhpT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sugar phosphate antiporter YP_002217735.1 4019207 R 439851 CDS YP_002217736.1 198244096 complement(4020741..4022069) 1 NC_011205.1 membrane protein regulates uhpT expression; regulatory protein UhpC 4022069 uhpC 439851004248 uhpC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 regulatory protein UhpC YP_002217736.1 4020741 R 439851 CDS YP_002217737.1 198244589 complement(4022079..4023581) 1 NC_011205.1 Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; sensory histidine kinase UhpB 4023581 uhpB 439851004249 uhpB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sensory histidine kinase UhpB YP_002217737.1 4022079 R 439851 CDS YP_002217738.1 198243718 complement(4023581..4024171) 1 NC_011205.1 response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; DNA-binding transcriptional activator UhpA 4024171 uhpA 439851004250 uhpA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional activator UhpA YP_002217738.1 4023581 R 439851 CDS YP_002217739.1 198243046 complement(4024246..4025259) 1 NC_011205.1 DeoX protein 4025259 439851004251 SeD_A4180 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DeoX protein YP_002217739.1 4024246 R 439851 CDS YP_002217740.1 198243823 complement(4025271..4026587) 1 NC_011205.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00885; L-fucose:H+ symporter permease 4026587 fucP 439851004252 fucP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-fucose:H+ symporter permease YP_002217740.1 4025271 R 439851 CDS YP_002217741.1 198243438 complement(4026618..4027538) 1 NC_011205.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152; ribokinase 4027538 rbsK 439851004253 rbsK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribokinase YP_002217741.1 4026618 R 439851 CDS YP_002217742.1 198242768 4027863..4028648 1 NC_011205.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; deoxyribose operon repressor 4028648 439851004254 SeD_A4183 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 deoxyribose operon repressor YP_002217742.1 4027863 D 439851 CDS YP_002217743.1 198242431 complement(4028650..4028940) 1 NC_011205.1 with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; acetolactate synthase 1 regulatory subunit 4028940 ilvN 439851004255 ilvN Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetolactate synthase 1 regulatory subunit YP_002217743.1 4028650 R 439851 CDS YP_002217744.1 198242310 complement(4028944..4030632) 1 NC_011205.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase catalytic subunit 4030632 ilvB 439851004256 ilvB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetolactate synthase catalytic subunit YP_002217744.1 4028944 R 439851 CDS YP_002217745.1 198242004 4031680..4032513 1 NC_011205.1 identified by match to protein family HMM PF00892; hypothetical protein 4032513 439851004257 SeD_A4186 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217745.1 4031680 D 439851 CDS YP_002217746.1 198246074 4032716..4033900 1 NC_011205.1 multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 4033900 emrD 439851004258 emrD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multidrug resistance protein D YP_002217746.1 4032716 D 439851 CDS YP_002217747.1 198245444 complement(4034976..4035914) 1 NC_011205.1 regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC 4035914 dsdC 439851004259 dsdC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator DsdC YP_002217747.1 4034976 R 439851 CDS YP_002217748.1 198244358 4036125..4037462 1 NC_011205.1 member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX 4037462 439851004260 SeD_A4189 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 permease DsdX YP_002217748.1 4036125 D 439851 CDS YP_002217749.1 198244008 4037480..4038802 1 NC_011205.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 4038802 dsdA 439851004261 dsdA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-serine dehydratase YP_002217749.1 4037480 D 439851 CDS YP_002217750.1 198244196 complement(4038884..4039414) 1 NC_011205.1 hypothetical protein 4039414 439851004262 SeD_A4191 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217750.1 4038884 R 439851 CDS YP_002217751.1 198245789 complement(4039411..4039773) 1 NC_011205.1 hypothetical protein 4039773 439851004263 SeD_A4192 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217751.1 4039411 R 439851 CDS YP_002217752.1 198245128 complement(4039763..4040110) 1 NC_011205.1 identified by match to protein family HMM PF02656; hypothetical protein 4040110 439851004264 SeD_A4194 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217752.1 4039763 R 439851 CDS YP_002217753.1 198242829 4040109..4040222 1 NC_011205.1 identified by glimmer; hypothetical protein 4040222 439851004265 SeD_A4193 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217753.1 4040109 D 439851 CDS YP_002217754.1 198242819 complement(4040230..4040523) 1 NC_011205.1 identified by glimmer; hypothetical protein 4040523 439851004266 SeD_A4195 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217754.1 4040230 R 439851 CDS YP_002217755.1 198242086 complement(4040553..4042214) 1 NC_011205.1 identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625; hypothetical protein 4042214 439851004267 SeD_A4196 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217755.1 4040553 R 439851 CDS YP_002217756.1 198243752 complement(4042403..4042831) 1 NC_011205.1 16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent; heat shock chaperone IbpB 4042831 ibpB 439851004268 ibpB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 heat shock chaperone IbpB YP_002217756.1 4042403 R 439851 CDS YP_002217757.1 198244818 complement(4042941..4043360) 1 NC_011205.1 with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; heat shock protein IbpA 4043360 ibpA 439851004269 ibpA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 heat shock protein IbpA YP_002217757.1 4042941 R 439851 CDS YP_002217758.1 198244830 complement(4043618..4043737) 1 NC_011205.1 hypothetical protein 4043737 439851004270 SeD_A4200 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217758.1 4043618 R 439851 CDS YP_002217759.1 198244189 4043706..4043996 1 NC_011205.1 identified by match to protein family HMM PF07119; hypothetical protein 4043996 439851004271 SeD_A4199 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217759.1 4043706 D 439851 CDS YP_002217760.1 198245334 complement(4043998..4045224) 1 NC_011205.1 ATP/GTP-binding protein 4045224 439851004272 SeD_A4201 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP/GTP-binding protein YP_002217760.1 4043998 R 439851 CDS YP_002217761.1 198242101 complement(4045346..4046389) 1 NC_011205.1 identified by match to protein family HMM PF03918; cytochrome c-type biogenesis protein H2 4046389 439851004273 SeD_A4202 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome c-type biogenesis protein H2 YP_002217761.1 4045346 R 439851 CDS YP_002217762.1 198243999 complement(4046386..4046943) 1 NC_011205.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR00385; thiol:disulfide interChange protein DsbE 4046943 439851004274 SeD_A4203 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiol:disulfide interChange protein DsbE YP_002217762.1 4046386 R 439851 CDS YP_002217763.1 198244727 complement(4046940..4048871) 1 NC_011205.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR00353; cytochrome c-type biogenesis protein CcmF 4048871 ccmF 439851004275 ccmF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome c-type biogenesis protein CcmF YP_002217763.1 4046940 R 439851 CDS YP_002217764.1 198244242 complement(4048868..4049368) 1 NC_011205.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 4049368 439851004276 SeD_A4205 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome c-type biogenesis protein CcmE YP_002217764.1 4048868 R 439851 CDS YP_002217765.1 198245694 complement(4049365..4049538) 1 NC_011205.1 identified by match to protein family HMM PF04995; match to protein family HMM TIGR03141; heme exporter protein CcmD 4049538 ccmD 439851004277 ccmD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 heme exporter protein CcmD YP_002217765.1 4049365 R 439851 CDS YP_002217766.1 198245263 complement(4049574..4050320) 1 NC_011205.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191; ABC family protein 4050320 439851004278 SeD_A4207 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC family protein YP_002217766.1 4049574 R 439851 CDS YP_002217767.1 198245266 complement(4050363..4051022) 1 NC_011205.1 identified by match to protein family HMM PF03379; match to protein family HMM TIGR01190; heme exporter protein CcmB 4051022 ccmB 439851004279 ccmB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 heme exporter protein CcmB YP_002217767.1 4050363 R 439851 CDS YP_002217768.1 198242218 complement(4051019..4051645) 1 NC_011205.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 4051645 ccmA 439851004280 ccmA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome c biogenesis protein CcmA YP_002217768.1 4051019 R 439851 CDS YP_002217769.1 198243782 complement(4051642..4053042) 1 NC_011205.1 identified by match to protein family HMM PF03150; cytochrome-c peroxidase 4053042 439851004281 SeD_A4210 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome-c peroxidase YP_002217769.1 4051642 R 439851 CDS YP_002217770.1 198243867 complement(4053232..4053864) 1 NC_011205.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD 4053864 torD 439851004282 torD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chaperone protein TorD YP_002217770.1 4053232 R 439851 CDS YP_002217771.1 198242214 complement(4053857..4056409) 1 NC_011205.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR00509; match to protein family HMM TIGR01409; match to protein family HMM TIGR02164; trimethylamine-N-oxide reductase TorA 4056409 torA 439851004283 torA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 trimethylamine-N-oxide reductase TorA YP_002217771.1 4053857 R 439851 CDS YP_002217772.1 198242883 complement(4056399..4057583) 1 NC_011205.1 identified by match to protein family HMM PF03264; match to protein family HMM TIGR02162; trimethylamine-N-oxide reductase c-type cytochrome TorC 4057583 torC 439851004284 torC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 trimethylamine-N-oxide reductase c-type cytochrome TorC YP_002217772.1 4056399 R 439851 CDS YP_002217773.1 198245190 4057677..4058405 1 NC_011205.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 4058405 439851004285 SeD_A4214 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator TorR YP_002217773.1 4057677 D 439851 CDS YP_002217774.1 198242864 complement(4058378..4059418) 1 NC_011205.1 periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 4059418 torT 439851004286 torT Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 TMAO reductase system periplasmic protein TorT YP_002217774.1 4058378 R 439851 CDS YP_002217775.1 198245821 complement(4059443..4059559) 1 NC_011205.1 identified by glimmer; hypothetical protein 4059559 439851004287 SeD_A4217 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217775.1 4059443 R 439851 CDS YP_002217776.1 198244217 4059546..4062233 1 NC_011205.1 Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; hybrid sensory histidine kinase TorS 4062233 torS 439851004288 torS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hybrid sensory histidine kinase TorS YP_002217776.1 4059546 D 439851 CDS YP_002217777.1 198244170 complement(4062259..4063557) 1 NC_011205.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00881; match to protein family HMM TIGR00893; d-galactonate transporter 4063557 439851004289 SeD_A4218 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 d-galactonate transporter YP_002217777.1 4062259 R 439851 CDS YP_002217778.1 198244787 complement(4063681..4064829) 1 NC_011205.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; galactonate dehydratase 4064829 439851004290 SeD_A4219 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 galactonate dehydratase YP_002217778.1 4063681 R 439851 CDS YP_002217779.1 198243740 complement(4064826..4065443) 1 NC_011205.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase 4065443 439851004291 SeD_A4220 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-dehydro-3-deoxy-6-phosphogalactonate aldolase YP_002217779.1 4064826 R 439851 CDS YP_002217780.1 198246094 complement(4065427..4066305) 1 NC_011205.1 identified by match to protein family HMM PF05035; 2-dehydro-3-deoxygalactonokinase 4066305 439851004292 SeD_A4221 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 2-dehydro-3-deoxygalactonokinase YP_002217780.1 4065427 R 439851 CDS YP_002217781.1 198241897 complement(4066302..4066991) 1 NC_011205.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; galactonate operon transcriptional repressor 4066991 dgoR 439851004293 dgoR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 galactonate operon transcriptional repressor YP_002217781.1 4066302 R 439851 CDS YP_002217782.1 198242544 complement(4067252..4068097) 1 NC_011205.1 YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins; sugar phosphatase 4068097 439851004294 SeD_A4223 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sugar phosphatase YP_002217782.1 4067252 R 439851 CDS YP_002217783.1 198242407 4068402..4069664 1 NC_011205.1 identified by match to protein family HMM PF07690; permease 4069664 439851004295 SeD_A4224 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 permease YP_002217783.1 4068402 D 439851 CDS YP_002217784.1 198243038 4069681..4070871 1 NC_011205.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing enzyme family protein 4070871 439851004296 SeD_A4225 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 mandelate racemase/muconate lactonizing enzyme family protein YP_002217784.1 4069681 D 439851 CDS YP_002217785.1 198244047 complement(4071901..4074315) 1 NC_011205.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 4074315 gyrB 439851004298 gyrB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA gyrase subunit B YP_002217785.1 4071901 R 439851 CDS YP_002217786.1 198244935 complement(4074344..4075417) 1 NC_011205.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4075417 recF 439851004299 recF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 recombination protein F YP_002217786.1 4074344 R 439851 CDS YP_002217787.1 198245644 complement(4075565..4076665) 1 NC_011205.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 4076665 dnaN 439851004300 dnaN Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA polymerase III subunit beta YP_002217787.1 4075565 R 439851 CDS YP_002217788.1 198245954 complement(4076670..4078070) 1 NC_011205.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 4078070 dnaA 439851004301 dnaA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chromosomal replication initiation protein YP_002217788.1 4076670 R 439851 CDS YP_002217789.1 198242230 4078731..4078871 1 NC_011205.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4078871 rpmH 439851004302 rpmH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L34 YP_002217789.1 4078731 D 439851 CDS YP_002217790.1 198243786 4078888..4079247 1 NC_011205.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4079247 rnpA 439851004303 rnpA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonuclease P YP_002217790.1 4078888 D 439851 CDS YP_002217791.1 198243281 4079471..4081117 1 NC_011205.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 4081117 439851004304 SeD_A4233 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein translocase component YidC YP_002217791.1 4079471 D 439851 CDS YP_002217792.1 198243069 4081219..4082622 1 NC_011205.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 4082622 trmE 439851004305 trmE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA modification GTPase TrmE YP_002217792.1 4081219 D 439851 CDS YP_002217793.1 198244845 4082805..4083992 1 NC_011205.1 Confers resistance to chloramphenicol; multidrug efflux system protein MdtL 4083992 439851004306 SeD_A4235 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multidrug efflux system protein MdtL YP_002217793.1 4082805 D 439851 CDS YP_002217794.1 198244526 4083961..4084920 1 NC_011205.1 Involved in anaerobic NO protection; DNA-binding transcriptional regulator YidZ 4084920 439851004307 SeD_A4236 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator YidZ YP_002217794.1 4083961 D 439851 CDS YP_002217795.1 198245695 4085078..4085833 1 NC_011205.1 hypothetical protein 4085833 439851004308 SeD_A4237 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217795.1 4085078 D 439851 CDS YP_002217796.1 198245535 4085833..4086417 1 NC_011205.1 identified by match to protein family HMM PF03358; hypothetical protein 4086417 439851004309 SeD_A4238 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217796.1 4085833 D 439851 CDS YP_002217797.1 198242805 complement(4086462..4087631) 1 NC_011205.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease family protein 4087631 439851004310 SeD_A4239 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 xanthine/uracil permease family protein YP_002217797.1 4086462 R 439851 CDS YP_002217798.1 198242471 4087800..4088465 1 NC_011205.1 YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily; 6-phosphogluconate phosphatase 4088465 439851004311 SeD_A4240 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 6-phosphogluconate phosphatase YP_002217798.1 4087800 D 439851 CDS YP_002217799.1 198244827 complement(4088560..4089285) 1 NC_011205.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 4089285 phoU 439851004312 phoU Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator PhoU YP_002217799.1 4088560 R 439851 CDS YP_002217800.1 198244493 complement(4089300..4090109) 1 NC_011205.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 4090109 pstB 439851004313 pstB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphate transporter ATP-binding protein YP_002217800.1 4089300 R 439851 CDS YP_002217801.1 198245813 complement(4090160..4091050) 1 NC_011205.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA 4091050 pstA 439851004314 pstA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphate transporter permease subunit PtsA YP_002217801.1 4090160 R 439851 CDS YP_002217802.1 198242039 complement(4091050..4092009) 1 NC_011205.1 part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PstC 4092009 pstC 439851004315 pstC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphate transporter permease subunit PstC YP_002217802.1 4091050 R 439851 CDS YP_002217803.1 198243699 complement(4092145..4093185) 1 NC_011205.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975; phosphate ABC transporter periplasmic substrate-binding protein PstS 4093185 pstS 439851004316 pstS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphate ABC transporter periplasmic substrate-binding protein PstS YP_002217803.1 4092145 R 439851 CDS YP_002217804.1 198244697 complement(4094772..4095590) 1 NC_011205.1 catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 4095590 439851004319 SeD_A4248 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 shikimate 5-dehydrogenase YP_002217804.1 4094772 R 439851 CDS YP_002217805.1 198244077 4095652..4097442 1 NC_011205.1 identified by match to protein family HMM PF00496; HTH-type transcriptional regulator SgrR 4097442 439851004320 SeD_A4249 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 HTH-type transcriptional regulator SgrR YP_002217805.1 4095652 D 439851 CDS YP_002217806.1 198245971 complement(4097593..4099422) 1 NC_011205.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 4099422 glmS 439851004321 glmS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucosamine--fructose-6-phosphate aminotransferase YP_002217806.1 4097593 R 439851 CDS YP_002217807.1 198246217 complement(4099611..4100981) 1 NC_011205.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 4100981 glmU 439851004322 glmU Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_002217807.1 4099611 R 439851 CDS YP_002217808.1 198244454 complement(4101109..4101291) 1 NC_011205.1 identified by glimmer; hypothetical protein 4101291 439851004323 SeD_A4252 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217808.1 4101109 R 439851 CDS YP_002217809.1 198242942 complement(4101301..4101999) 1 NC_011205.1 hypothetical protein 4101999 439851004324 SeD_A4253 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217809.1 4101301 R 439851 CDS YP_002217810.1 198242576 complement(4102229..4102642) 1 NC_011205.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon 4102642 atpC 439851004325 atpC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP synthase F0F1 subunit epsilon YP_002217810.1 4102229 R 439851 CDS YP_002217811.1 198245365 complement(4102669..4104051) 1 NC_011205.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 4104051 atpD 439851004326 atpD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP synthase F0F1 subunit beta YP_002217811.1 4102669 R 439851 CDS YP_002217812.1 198245519 complement(4104078..4104941) 1 NC_011205.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 4104941 atpG 439851004327 atpG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP synthase F0F1 subunit gamma YP_002217812.1 4104078 R 439851 CDS YP_002217813.1 198246029 complement(4104992..4106533) 1 NC_011205.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 4106533 atpA 439851004328 atpA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP synthase F0F1 subunit alpha YP_002217813.1 4104992 R 439851 CDS YP_002217814.1 198244541 complement(4106546..4107079) 1 NC_011205.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 4107079 atpH 439851004329 atpH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP synthase F0F1 subunit delta YP_002217814.1 4106546 R 439851 CDS YP_002217815.1 198245044 complement(4107094..4107564) 1 NC_011205.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B 4107564 atpF 439851004330 atpF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP synthase F0F1 subunit B YP_002217815.1 4107094 R 439851 CDS YP_002217816.1 198243013 complement(4107624..4107863) 1 NC_011205.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 4107863 atpE 439851004331 atpE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP synthase F0F1 subunit C YP_002217816.1 4107624 R 439851 CDS YP_002217817.1 198245800 complement(4107910..4108725) 1 NC_011205.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 4108725 atpB 439851004332 atpB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP synthase F0F1 subunit A YP_002217817.1 4107910 R 439851 CDS YP_002217818.1 198244163 complement(4108734..4108859) 1 NC_011205.1 ATP synthase F0, I subunit 4108859 atpI 439851004333 atpI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP synthase F0, I subunit YP_002217818.1 4108734 R 439851 CDS YP_002217819.1 198244617 complement(4109229..4109372) 1 NC_011205.1 hypothetical protein 4109372 439851004334 SeD_A4263 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217819.1 4109229 R 439851 CDS YP_002217820.1 198244775 complement(4109480..4109617) 1 NC_011205.1 identified by glimmer; hypothetical protein 4109617 439851004335 SeD_A4264 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217820.1 4109480 R 439851 CDS YP_002217821.1 198243877 complement(4109728..4110351) 1 NC_011205.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 4110351 gidB 439851004336 gidB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 16S rRNA methyltransferase GidB YP_002217821.1 4109728 R 439851 CDS YP_002217822.1 198242041 complement(4110454..4112343) 1 NC_011205.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 4112343 gidA 439851004337 gidA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_002217822.1 4110454 R 439851 CDS YP_002217823.1 198242847 complement(4112722..4113165) 1 NC_011205.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 4113165 mioC 439851004338 mioC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flavodoxin YP_002217823.1 4112722 R 439851 CDS YP_002217824.1 198242947 complement(4113255..4113713) 1 NC_011205.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 4113713 asnC 439851004339 asnC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator AsnC YP_002217824.1 4113255 R 439851 CDS YP_002217825.1 198243587 4113864..4114856 1 NC_011205.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 4114856 asnA 439851004340 asnA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 asparagine synthetase AsnA YP_002217825.1 4113864 D 439851 CDS YP_002217826.1 198242066 complement(4114861..4116312) 1 NC_011205.1 contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; hypothetical protein 4116312 yieM 439851004341 yieM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217826.1 4114861 R 439851 CDS YP_002217827.1 198244311 complement(4116306..4117802) 1 NC_011205.1 interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase; regulatory ATPase RavA 4117802 439851004342 SeD_A4271 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 regulatory ATPase RavA YP_002217827.1 4116306 R 439851 CDS YP_002217828.1 198243483 4118150..4120018 1 NC_011205.1 Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transport protein Kup 4120018 trkD 439851004343 trkD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 potassium transport protein Kup YP_002217828.1 4118150 D 439851 CDS YP_002217829.1 198243012 4120235..4120654 1 NC_011205.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 4120654 rbsD 439851004344 rbsD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-ribose pyranase YP_002217829.1 4120235 D 439851 CDS YP_002217830.1 198242412 4120617..4122167 1 NC_011205.1 with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP binding protein 4122167 rbsA 439851004345 rbsA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-ribose transporter ATP binding protein YP_002217830.1 4120617 D 439851 CDS YP_002217831.1 198242650 4122173..4123138 1 NC_011205.1 functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease protein 4123138 rbsC 439851004346 rbsC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribose ABC transporter permease protein YP_002217831.1 4122173 D 439851 CDS YP_002217832.1 198245799 4123163..4124053 1 NC_011205.1 periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 4124053 rbsB 439851004347 rbsB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-ribose transporter subunit RbsB YP_002217832.1 4123163 D 439851 CDS YP_002217833.1 198246151 4124186..4125115 1 NC_011205.1 catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 4125115 rbsK 439851004348 rbsK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribokinase YP_002217833.1 4124186 D 439851 CDS YP_002217834.1 198243501 4125119..4126117 1 NC_011205.1 DNA-binding transcriptional repressor of ribose metabolism; transcriptional repressor RbsR 4126117 439851004349 SeD_A4278 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional repressor RbsR YP_002217834.1 4125119 D 439851 CDS YP_002217835.1 198244161 complement(4126083..4127510) 1 NC_011205.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; inner membrane transport protein YieO 4127510 439851004350 SeD_A4279 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane transport protein YieO YP_002217835.1 4126083 R 439851 CDS YP_002217836.1 198243205 complement(4127522..4128226) 1 NC_011205.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 4128226 439851004351 SeD_A4280 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GntR family transcriptional regulator YP_002217836.1 4127522 R 439851 CDS YP_002217837.1 198241791 complement(4134139..4134975) 1 NC_011205.1 Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; transcriptional regulator HdfR 4134975 439851004358 SeD_A4288 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator HdfR YP_002217837.1 4134139 R 439851 CDS YP_002217838.1 198242416 4135094..4135432 1 NC_011205.1 identified by match to protein family HMM PF04219; hypothetical protein 4135432 439851004359 SeD_A4289 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217838.1 4135094 D 439851 CDS YP_002217839.1 198242242 complement(4135457..4136977) 1 NC_011205.1 among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; ATP-dependent protease 4136977 439851004360 SeD_A4290 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent protease YP_002217839.1 4135457 R 439851 CDS YP_002217840.1 198242605 4137567..4139213 1 NC_011205.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 4139213 ilvG 439851004361 ilvG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetolactate synthase 2 catalytic subunit YP_002217840.1 4137567 D 439851 CDS YP_002217841.1 198245396 4139210..4139473 1 NC_011205.1 acetolactate synthase 2 regulatory subunit 4139473 ilvM 439851004362 ilvM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetolactate synthase 2 regulatory subunit YP_002217841.1 4139210 D 439851 CDS YP_002217842.1 198245885 4139491..4140420 1 NC_011205.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4140420 ilvE 439851004363 ilvE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 branched-chain amino acid aminotransferase YP_002217842.1 4139491 D 439851 CDS YP_002217843.1 198243549 4140580..4142430 1 NC_011205.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4142430 ilvD 439851004364 ilvD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dihydroxy-acid dehydratase YP_002217843.1 4140580 D 439851 CDS YP_002217844.1 198244246 4142433..4143977 1 NC_011205.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 4143977 ilvA 439851004365 ilvA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 threonine dehydratase YP_002217844.1 4142433 D 439851 CDS YP_002217845.1 198243412 4144215..4144577 1 NC_011205.1 identified by match to protein family HMM PF05973; hypothetical protein 4144577 439851004366 SeD_A4296 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217845.1 4144215 D 439851 CDS YP_002217846.1 198243432 4144574..4144915 1 NC_011205.1 XRE family transcriptional regulator 4144915 439851004367 SeD_A4297 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 XRE family transcriptional regulator YP_002217846.1 4144574 D 439851 CDS YP_002217847.1 198246195 complement(4144918..4145805) 1 NC_011205.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 4145805 439851004368 SeD_A4298 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator IlvY YP_002217847.1 4144918 R 439851 CDS YP_002217848.1 198241765 4145970..4147445 1 NC_011205.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 4147445 439851004369 SeD_A4299 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ketol-acid reductoisomerase YP_002217848.1 4145970 D 439851 CDS YP_002217849.1 198245194 complement(4147537..4147818) 1 NC_011205.1 identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase C 4147818 439851004370 SeD_A4300 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidyl-prolyl cis-trans isomerase C YP_002217849.1 4147537 R 439851 CDS YP_002217850.1 198245972 4148356..4150380 1 NC_011205.1 single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; ATP-dependent DNA helicase Rep 4150380 rep 439851004371 rep Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent DNA helicase Rep YP_002217850.1 4148356 D 439851 CDS YP_002217851.1 198244176 complement(4150420..4151901) 1 NC_011205.1 catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; guanosine pentaphosphate phosphohydrolase 4151901 gppA 439851004372 gppA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 guanosine pentaphosphate phosphohydrolase YP_002217851.1 4150420 R 439851 CDS YP_002217852.1 198244929 complement(4152038..4153303) 1 NC_011205.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 4153303 rhlB 439851004373 rhlB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent RNA helicase RhlB YP_002217852.1 4152038 R 439851 CDS YP_002217853.1 198242687 4153447..4153776 1 NC_011205.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 4153776 trxA 439851004374 trxA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thioredoxin YP_002217853.1 4153447 D 439851 CDS YP_002217854.1 198243711 4154195..4155454 1 NC_011205.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 4155454 rho 439851004375 rho Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcription termination factor Rho YP_002217854.1 4154195 D 439851 CDS YP_002217855.1 198241786 4155684..4156787 1 NC_011205.1 identified by match to protein family HMM PF00953; match to protein family HMM TIGR02380; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 4156787 wecA 439851004376 wecA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase YP_002217855.1 4155684 D 439851 CDS YP_002217856.1 198245570 4156799..4157845 1 NC_011205.1 Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; lipopolysaccharide biosynthesis protein WzzE 4157845 439851004377 SeD_A4307 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipopolysaccharide biosynthesis protein WzzE YP_002217856.1 4156799 D 439851 CDS YP_002217857.1 198242772 4157901..4159031 1 NC_011205.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 4159031 439851004378 SeD_A4308 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UDP-N-acetylglucosamine 2-epimerase YP_002217857.1 4157901 D 439851 CDS YP_002217858.1 198244350 4159028..4160290 1 NC_011205.1 catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase 4160290 wecC 439851004379 wecC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UDP-N-acetyl-D-mannosamine dehydrogenase YP_002217858.1 4159028 D 439851 CDS YP_002217859.1 198245411 4160290..4161357 1 NC_011205.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase 4161357 rfbB2 439851004380 rfbB2 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dTDP-glucose 4,6-dehydratase YP_002217859.1 4160290 D 439851 CDS YP_002217860.1 198244772 4161390..4161614 1 NC_011205.1 glucose-1-phosphate thymidylyltransferase 4161614 439851004381 SeD_A4311 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucose-1-phosphate thymidylyltransferase YP_002217860.1 4161390 D 439851 CDS YP_002217861.1 198244056 4161592..4162269 1 NC_011205.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR02382; TDP-fucosamine acetyltransferase 4162269 wecD 439851004382 wecD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 TDP-fucosamine acetyltransferase YP_002217861.1 4161592 D 439851 CDS YP_002217862.1 198243997 4162274..4163404 1 NC_011205.1 catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4163404 wecE 439851004383 wecE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 TDP-4-oxo-6-deoxy-D-glucose transaminase YP_002217862.1 4162274 D 439851 CDS YP_002217863.1 198243340 4163406..4164656 1 NC_011205.1 identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein 4164656 439851004384 SeD_A4314 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 polysaccharide biosynthesis protein YP_002217863.1 4163406 D 439851 CDS YP_002217864.1 198242691 4164653..4165732 1 NC_011205.1 catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase 4165732 wecF 439851004385 wecF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-alpha-L-fucosyltransferase YP_002217864.1 4164653 D 439851 CDS YP_002217865.1 198242072 4165729..4167087 1 NC_011205.1 enterobacterial common antigen polymerase; common antigen polymerase 4167087 wzyE 439851004386 wzyE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 common antigen polymerase YP_002217865.1 4165729 D 439851 CDS YP_002217866.1 198245652 4167084..4167824 1 NC_011205.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; UDP-N-acetyl-D-mannosaminuronic acid transferase 4167824 439851004387 SeD_A4317 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UDP-N-acetyl-D-mannosaminuronic acid transferase YP_002217866.1 4167084 D 439851 CDS YP_002217867.1 198245191 4168031..4169413 1 NC_011205.1 uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function; transport protein YifK 4169413 439851004388 SeD_A4318 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transport protein YifK YP_002217867.1 4168031 D 439851 CDS YP_002217868.1 198243522 complement(4170530..4171729) 1 NC_011205.1 identified by match to protein family HMM PF07219; match to protein family HMM PF07719; match to protein family HMM TIGR00540; protoheme IX biogenesis protein 4171729 hemY 439851004394 hemY Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 protoheme IX biogenesis protein YP_002217868.1 4170530 R 439851 CDS YP_002217869.1 198241936 complement(4171729..4172898) 1 NC_011205.1 identified by match to protein family HMM PF04375; uroporphyrinogen III C-methyltransferase 4172898 439851004395 SeD_A4325 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 uroporphyrinogen III C-methyltransferase YP_002217869.1 4171729 R 439851 CDS YP_002217870.1 198244848 complement(4172920..4173660) 1 NC_011205.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 4173660 hemD 439851004396 hemD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 uroporphyrinogen-III synthase YP_002217870.1 4172920 R 439851 CDS YP_002217871.1 198243181 complement(4173657..4174598) 1 NC_011205.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 4174598 hemC 439851004397 hemC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 porphobilinogen deaminase YP_002217871.1 4173657 R 439851 CDS YP_002217872.1 198246090 4174975..4177521 1 NC_011205.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 4177521 cyaA 439851004398 cyaA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 adenylate cyclase YP_002217872.1 4174975 D 439851 CDS YP_002217873.1 198244470 complement(4177599..4177919) 1 NC_011205.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 4177919 cyaY 439851004399 cyaY Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 frataxin-like protein YP_002217873.1 4177599 R 439851 CDS YP_002217874.1 198242881 complement(4177989..4178369) 1 NC_011205.1 inner membrane protein 4178369 439851004400 SeD_A4330 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002217874.1 4177989 R 439851 CDS YP_002217875.1 198242679 4179075..4179278 1 NC_011205.1 lipoprotein 4179278 439851004402 SeD_A4333 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein YP_002217875.1 4179075 D 439851 CDS YP_002217876.1 198243444 4179315..4180139 1 NC_011205.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4180139 dapF 439851004403 dapF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 diaminopimelate epimerase YP_002217876.1 4179315 D 439851 CDS YP_002217877.1 198244919 4180136..4180843 1 NC_011205.1 identified by match to protein family HMM PF04340; hypothetical protein 4180843 439851004404 SeD_A4335 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217877.1 4180136 D 439851 CDS YP_002217878.1 198244691 4180840..4181742 1 NC_011205.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 4181742 xerC 439851004405 xerC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 site-specific tyrosine recombinase XerC YP_002217878.1 4180840 D 439851 CDS YP_002217879.1 198246207 4181742..4182458 1 NC_011205.1 YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; flavin mononucleotide phosphatase 4182458 439851004406 SeD_A4337 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 flavin mononucleotide phosphatase YP_002217879.1 4181742 D 439851 CDS YP_002217880.1 198245946 4182594..4184756 1 NC_011205.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 4184756 uvrD 439851004407 uvrD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-dependent helicase II YP_002217880.1 4182594 D 439851 CDS YP_002217881.1 198245219 4185228..4186178 1 NC_011205.1 responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA 4186178 corA 439851004408 corA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 magnesium/nickel/cobalt transporter CorA YP_002217881.1 4185228 D 439851 CDS YP_002217882.1 198242717 complement(4186226..4186606) 1 NC_011205.1 hypothetical protein 4186606 439851004409 SeD_A4340 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217882.1 4186226 R 439851 CDS YP_002217883.1 198242065 4186781..4187077 1 NC_011205.1 hypothetical protein 4187077 439851004410 SeD_A4341 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217883.1 4186781 D 439851 CDS YP_002217884.1 198244767 complement(4187117..4188004) 1 NC_011205.1 identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; RarD protein 4188004 rarD 439851004411 rarD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RarD protein YP_002217884.1 4187117 R 439851 CDS YP_002217885.1 198244264 complement(4188048..4188515) 1 NC_011205.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; hypothetical protein 4188515 439851004412 SeD_A4343 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217885.1 4188048 R 439851 CDS YP_002217886.1 198243591 4188680..4189549 1 NC_011205.1 catalyzes the hydrolysis of phosphatidylcholine; phospholipase A 4189549 439851004413 SeD_A4344 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phospholipase A YP_002217886.1 4188680 D 439851 CDS YP_002217887.1 198243255 4189615..4191462 1 NC_011205.1 functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; ATP-dependent DNA helicase RecQ 4191462 recQ 439851004414 recQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent DNA helicase RecQ YP_002217887.1 4189615 D 439851 CDS YP_002217888.1 198242594 4191526..4192146 1 NC_011205.1 identified by match to protein family HMM PF01810; match to protein family HMM TIGR00949; threonine efflux system 4192146 439851004415 SeD_A4346 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 threonine efflux system YP_002217888.1 4191526 D 439851 CDS YP_002217889.1 198244382 complement(4192186..4192806) 1 NC_011205.1 identified by match to protein family HMM PF01810; match to protein family HMM TIGR00949; homoserine/homoserine lactone efflux protein 4192806 rhtB 439851004416 rhtB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 homoserine/homoserine lactone efflux protein YP_002217889.1 4192186 R 439851 CDS YP_002217890.1 198246179 4192917..4193933 1 NC_011205.1 lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; lysophospholipase L2 4193933 pldB 439851004417 pldB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lysophospholipase L2 YP_002217890.1 4192917 D 439851 CDS YP_002217891.1 198244874 complement(4195617..4196570) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; transcriptional regulator MetR 4196570 metR 439851004419 metR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator MetR YP_002217891.1 4195617 R 439851 CDS YP_002217892.1 198241776 4196819..4199083 1 NC_011205.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 4199083 metE 439851004420 metE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase YP_002217892.1 4196819 D 439851 CDS YP_002217893.1 198245066 4199271..4199417 1 NC_011205.1 identified by glimmer; hypothetical protein 4199417 439851004421 SeD_A4352 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217893.1 4199271 D 439851 CDS YP_002217894.1 198242498 4199474..4200769 1 NC_011205.1 identified by match to protein family HMM PF02810; match to protein family HMM PF04055; chondroitin sulfate/heparin utilization regulation protein 4200769 439851004422 SeD_A4353 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chondroitin sulfate/heparin utilization regulation protein YP_002217894.1 4199474 D 439851 CDS YP_002217895.1 198245063 4201913..4202674 1 NC_011205.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4202674 udp 439851004424 udp Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 uridine phosphorylase YP_002217895.1 4201913 D 439851 CDS YP_002217896.1 198243178 4202814..4204244 1 NC_011205.1 YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner; DNA recombination protein RmuC 4204244 439851004425 SeD_A4356 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA recombination protein RmuC YP_002217896.1 4202814 D 439851 CDS YP_002217897.1 198245801 4204340..4205095 1 NC_011205.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 4205095 ubiE 439851004426 ubiE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ubiquinone/menaquinone biosynthesis methyltransferase YP_002217897.1 4204340 D 439851 CDS YP_002217898.1 198244434 4205105..4205710 1 NC_011205.1 identified by match to protein family HMM PF06843; hypothetical protein 4205710 439851004427 SeD_A4358 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217898.1 4205105 D 439851 CDS YP_002217899.1 198241784 4205707..4207347 1 NC_011205.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; ubiquinone biosynthesis protein UbiB 4207347 ubiB 439851004428 ubiB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ubiquinone biosynthesis protein UbiB YP_002217899.1 4205707 D 439851 CDS YP_002217900.1 198242426 4207553..4207807 1 NC_011205.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 4207807 tatA 439851004429 tatA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 twin arginine translocase protein A YP_002217900.1 4207553 D 439851 CDS YP_002217901.1 198243843 4207811..4208359 1 NC_011205.1 mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 4208359 439851004430 SeD_A4361 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sec-independent translocase YP_002217901.1 4207811 D 439851 CDS YP_002217902.1 198242971 4208362..4209141 1 NC_011205.1 with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; twin-arginine protein translocation system subunit TatC 4209141 tatC 439851004431 tatC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 twin-arginine protein translocation system subunit TatC YP_002217902.1 4208362 D 439851 CDS YP_002217903.1 198245454 4209171..4209965 1 NC_011205.1 magnesium dependent; not involved in the Sec-independent protein export system; DNase TatD 4209965 439851004432 SeD_A4363 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNase TatD YP_002217903.1 4209171 D 439851 CDS YP_002217904.1 198242878 complement(4209973..4210461) 1 NC_011205.1 identified by match to protein family HMM PF02357; match to protein family HMM TIGR01955; transcriptional activator RfaH 4210461 rfaH 439851004433 rfaH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional activator RfaH YP_002217904.1 4209973 R 439851 CDS YP_002217905.1 198245858 4210647..4212125 1 NC_011205.1 catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 4212125 ubiD 439851004434 ubiD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_002217905.1 4210647 D 439851 CDS YP_002217906.1 198245415 4212211..4212912 1 NC_011205.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 4212912 fre 439851004435 fre Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 FMN reductase YP_002217906.1 4212211 D 439851 CDS YP_002217907.1 198242738 4213115..4214938 1 NC_011205.1 identified by match to protein family HMM PF05935; arylsulfotransferase 4214938 439851004436 SeD_A4367 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arylsulfotransferase YP_002217907.1 4213115 D 439851 CDS YP_002217908.1 198243531 complement(4215135..4216298) 1 NC_011205.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 4216298 fadA 439851004437 fadA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-ketoacyl-CoA thiolase YP_002217908.1 4215135 R 439851 CDS YP_002217909.1 198245124 complement(4216308..4218623) 1 NC_011205.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 4218623 fadB 439851004438 fadB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multifunctional fatty acid oxidation complex subunit alpha YP_002217909.1 4216308 R 439851 CDS YP_002217910.1 198242585 4218687..4220018 1 NC_011205.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 4220018 pepQ 439851004439 pepQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 proline dipeptidase YP_002217910.1 4218687 D 439851 CDS YP_002217911.1 198244820 4220018..4220632 1 NC_011205.1 identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257; hypothetical protein 4220632 439851004440 SeD_A4371 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217911.1 4220018 D 439851 CDS YP_002217912.1 198246209 4220671..4222122 1 NC_011205.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; potassium transporter 4222122 trkH 439851004441 trkH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 potassium transporter YP_002217912.1 4220671 D 439851 CDS YP_002217913.1 198245564 4222134..4222679 1 NC_011205.1 catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 4222679 hemG 439851004442 hemG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 protoporphyrinogen oxidase YP_002217913.1 4222134 D 439851 CDS YP_002217914.1 198244969 4224938..4225054 1 NC_011205.1 identified by glimmer; hypothetical protein 4225054 439851004446 SeD_A4377 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217914.1 4224938 D 439851 CDS YP_002217915.1 198244446 complement(4228635..4229165) 1 NC_011205.1 in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; molybdopterin-guanine dinucleotide biosynthesis protein B 4229165 mobB 439851004449 mobB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molybdopterin-guanine dinucleotide biosynthesis protein B YP_002217915.1 4228635 R 439851 CDS YP_002217916.1 198243962 complement(4229147..4229731) 1 NC_011205.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4229731 mobA 439851004450 mobA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_002217916.1 4229147 R 439851 CDS YP_002217917.1 198242989 4229801..4230070 1 NC_011205.1 identified by match to protein family HMM PF06288; hypothetical protein 4230070 439851004451 SeD_A4383 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217917.1 4229801 D 439851 CDS YP_002217918.1 198241829 4230147..4231133 1 NC_011205.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4231133 439851004452 SeD_A4384 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 serine/threonine protein kinase YP_002217918.1 4230147 D 439851 CDS YP_002217919.1 198245828 4231150..4231773 1 NC_011205.1 identified by match to protein family HMM PF01323; periplasmic protein disulfide isomerase I 4231773 439851004453 SeD_A4385 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 periplasmic protein disulfide isomerase I YP_002217919.1 4231150 D 439851 CDS YP_002217920.1 198245402 complement(4231786..4232694) 1 NC_011205.1 identified by match to protein family HMM PF01553; acyltransferase 4232694 439851004454 SeD_A4386 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acyltransferase YP_002217920.1 4231786 R 439851 CDS YP_002217921.1 198246139 complement(4232892..4233023) 1 NC_011205.1 identified by glimmer; hypothetical protein 4233023 439851004455 SeD_A4387 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217921.1 4232892 R 439851 CDS YP_002217922.1 198245003 4233082..4235868 1 NC_011205.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 4235868 439851004456 SeD_A4388 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA polymerase I YP_002217922.1 4233082 D 439851 CDS YP_002217923.1 198244514 complement(4236203..4236835) 1 NC_011205.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 4236835 engB 439851004458 engB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribosome biogenesis GTP-binding protein YsxC YP_002217923.1 4236203 R 439851 CDS YP_002217924.1 198244160 4237418..4237933 1 NC_011205.1 identified by match to protein family HMM PF04220; hypothetical protein 4237933 439851004460 SeD_A4392 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217924.1 4237418 D 439851 CDS YP_002217925.1 198243649 4238122..4239495 1 NC_011205.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4239495 hemN 439851004461 hemN Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 coproporphyrinogen III oxidase YP_002217925.1 4238122 D 439851 CDS YP_002217926.1 198243758 complement(4239808..4241217) 1 NC_011205.1 response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; nitrogen regulation protein NR(I) 4241217 glnG 439851004462 glnG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitrogen regulation protein NR(I) YP_002217926.1 4239808 R 439851 CDS YP_002217927.1 198243097 complement(4241226..4242275) 1 NC_011205.1 sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) 4242275 glnL 439851004463 glnL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nitrogen regulation protein NR(II) YP_002217927.1 4241226 R 439851 CDS YP_002217928.1 198242858 complement(4242550..4243959) 1 NC_011205.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 4243959 glnA 439851004464 glnA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamine synthetase YP_002217928.1 4242550 R 439851 CDS YP_002217929.1 198242119 4244335..4246158 1 NC_011205.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein 4246158 typA 439851004465 typA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GTP-binding protein YP_002217929.1 4244335 D 439851 CDS YP_002217930.1 198245691 complement(4246213..4246947) 1 NC_011205.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; Cof family hydrolase 4246947 439851004466 SeD_A4398 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Cof family hydrolase YP_002217930.1 4246213 R 439851 CDS YP_002217931.1 198246068 complement(4246932..4247810) 1 NC_011205.1 inner membrane protein 4247810 439851004467 SeD_A4399 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002217931.1 4246932 R 439851 CDS YP_002217932.1 198245036 complement(4249049..4249924) 1 NC_011205.1 membrane-associated metal-dependent hydrolase 4249924 439851004469 SeD_A4401 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 membrane-associated metal-dependent hydrolase YP_002217932.1 4249049 R 439851 CDS YP_002217933.1 198243653 complement(4249917..4250903) 1 NC_011205.1 identified by match to protein family HMM PF08443; hypothetical protein 4250903 439851004470 SeD_A4402 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217933.1 4249917 R 439851 CDS YP_002217934.1 198241970 complement(4250955..4251803) 1 NC_011205.1 hypothetical protein 4251803 439851004471 SeD_A4403 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217934.1 4250955 R 439851 CDS YP_002217935.1 198245439 complement(4251960..4252652) 1 NC_011205.1 porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown; outer membrane porin L 4252652 ompL 439851004472 ompL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane porin L YP_002217935.1 4251960 R 439851 CDS YP_002217936.1 198245381 complement(4252720..4254141) 1 NC_011205.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792; glucuronide carrier protein 4254141 uidB 439851004473 uidB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucuronide carrier protein YP_002217936.1 4252720 R 439851 CDS YP_002217937.1 198246158 complement(4254187..4255569) 1 NC_011205.1 identified by match to protein family HMM TIGR00792; inner membrane symporter YihP 4255569 439851004474 SeD_A4406 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane symporter YihP YP_002217937.1 4254187 R 439851 CDS YP_002217938.1 198244106 complement(4255615..4257651) 1 NC_011205.1 identified by match to protein family HMM PF01055; alpha-glucosidase 4257651 439851004475 SeD_A4407 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 alpha-glucosidase YP_002217938.1 4255615 R 439851 CDS YP_002217939.1 198244909 complement(4257695..4258537) 1 NC_011205.1 identified by match to protein family HMM PF01263; aldose-1-epimerase 4258537 439851004476 SeD_A4408 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aldose-1-epimerase YP_002217939.1 4257695 R 439851 CDS YP_002217940.1 198245149 complement(4258556..4259797) 1 NC_011205.1 identified by match to protein family HMM PF07221; N-acylglucosamine 2-epimerase 4259797 439851004477 SeD_A4409 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N-acylglucosamine 2-epimerase YP_002217940.1 4258556 R 439851 CDS YP_002217941.1 198245501 complement(4259813..4260691) 1 NC_011205.1 identified by match to protein family HMM PF01791; deoxyribose-phosphate aldolase 4260691 439851004478 SeD_A4410 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 deoxyribose-phosphate aldolase YP_002217941.1 4259813 R 439851 CDS YP_002217942.1 198246152 complement(4260714..4261610) 1 NC_011205.1 identified by match to protein family HMM PF03446; 3-hydroxyisobutyrate dehydrogenase 4261610 439851004479 SeD_A4411 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-hydroxyisobutyrate dehydrogenase YP_002217942.1 4260714 R 439851 CDS YP_002217943.1 198241922 complement(4261598..4261717) 1 NC_011205.1 identified by glimmer; hypothetical protein 4261717 439851004480 SeD_A4412 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217943.1 4261598 R 439851 CDS YP_002217944.1 198242557 4261775..4262671 1 NC_011205.1 identified by match to protein family HMM PF00294; PfkB family kinase 4262671 439851004481 SeD_A4413 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PfkB family kinase YP_002217944.1 4261775 D 439851 CDS YP_002217945.1 198244179 4262705..4263508 1 NC_011205.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; glycerol-3-phosphate regulon repressor 4263508 439851004482 SeD_A4414 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycerol-3-phosphate regulon repressor YP_002217945.1 4262705 D 439851 CDS YP_002217946.1 198244807 4263699..4264298 1 NC_011205.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; phosphatase 4264298 yihX 439851004483 yihX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphatase YP_002217946.1 4263699 D 439851 CDS YP_002217947.1 198245131 4264292..4265164 1 NC_011205.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 4265164 rbn 439851004484 rbn Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonuclease BN YP_002217947.1 4264292 D 439851 CDS YP_002217948.1 198245624 4265161..4265598 1 NC_011205.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4265598 dtd 439851004485 dtd Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-tyrosyl-tRNA(Tyr) deacylase YP_002217948.1 4265161 D 439851 CDS YP_002217949.1 198246131 4265595..4266584 1 NC_011205.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR02447; GNAT family acetyltransferase 4266584 439851004486 SeD_A4418 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GNAT family acetyltransferase YP_002217949.1 4265595 D 439851 CDS YP_002217950.1 198244133 complement(4266599..4267027) 1 NC_011205.1 identified by match to protein family HMM PF01381; hypothetical protein 4267027 439851004487 SeD_A4419 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217950.1 4266599 R 439851 CDS YP_002217951.1 198243910 complement(4267042..4267353) 1 NC_011205.1 hypothetical protein 4267353 439851004488 SeD_A4420 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217951.1 4267042 R 439851 CDS YP_002217952.1 198242892 complement(4267439..4268368) 1 NC_011205.1 identified by match to protein family HMM PF07859; acetyl esterase 4268368 439851004489 SeD_A4421 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetyl esterase YP_002217952.1 4267439 R 439851 CDS YP_002217953.1 198242541 complement(4268562..4268795) 1 NC_011205.1 hypothetical protein 4268795 439851004490 SeD_A4423 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217953.1 4268562 R 439851 CDS YP_002217954.1 198242519 4268766..4268897 1 NC_011205.1 hypothetical protein 4268897 439851004491 SeD_A4422 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217954.1 4268766 D 439851 CDS YP_002217955.1 198241885 4268898..4269188 1 NC_011205.1 identified by match to protein family HMM PF01381; XRE family transcriptional regulator 4269188 439851004492 SeD_A4424 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 XRE family transcriptional regulator YP_002217955.1 4268898 D 439851 CDS YP_002217956.1 198245546 complement(4269235..4270164) 1 NC_011205.1 required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE 4270164 fdhE 439851004493 fdhE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate dehydrogenase accessory protein FdhE YP_002217956.1 4269235 R 439851 CDS YP_002217957.1 198244891 complement(4270161..4270796) 1 NC_011205.1 cytochrome b556(FDO) component; heme containing; formate dehydrogenase-O subunit gamma 4270796 fdoI 439851004494 fdoI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate dehydrogenase-O subunit gamma YP_002217957.1 4270161 R 439851 CDS YP_002217958.1 198244810 complement(4270793..4271695) 1 NC_011205.1 identified by match to protein family HMM PF00037; match to protein family HMM PF09163; match to protein family HMM TIGR01582; formate dehydrogenase-O, iron-sulfur subunit 4271695 fdoH 439851004495 fdoH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate dehydrogenase-O, iron-sulfur subunit YP_002217958.1 4270793 R 439851 CDS YP_002217959.1 198241873 4274953..4275789 1 NC_011205.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 4275789 fdhD 439851004498 fdhD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate dehydrogenase accessory protein YP_002217959.1 4274953 D 439851 CDS YP_002217960.1 198243669 complement(4276057..4277088) 1 NC_011205.1 inner membrane lipoprotein 4277088 439851004499 SeD_A4431 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane lipoprotein YP_002217960.1 4276057 R 439851 CDS YP_002217961.1 198243061 4277136..4277270 1 NC_011205.1 identified by glimmer; hypothetical protein 4277270 439851004500 SeD_A4432 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217961.1 4277136 D 439851 CDS YP_002217962.1 198244947 4277271..4278371 1 NC_011205.1 hypothetical protein 4278371 439851004501 SeD_A4433 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217962.1 4277271 D 439851 CDS YP_002217963.1 198244313 4278368..4278496 1 NC_011205.1 identified by glimmer; hypothetical protein 4278496 439851004502 SeD_A4434 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217963.1 4278368 D 439851 CDS YP_002217964.1 198246226 complement(4278727..4279050) 1 NC_011205.1 identified by match to protein family HMM PF05437; branched-chain amino acid transport 4279050 439851004503 SeD_A4435 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 branched-chain amino acid transport YP_002217964.1 4278727 R 439851 CDS YP_002217965.1 198245585 complement(4279050..4279709) 1 NC_011205.1 identified by match to protein family HMM PF03591; AzlC family protein 4279709 439851004504 SeD_A4436 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 AzlC family protein YP_002217965.1 4279050 R 439851 CDS YP_002217966.1 198244893 4279810..4280358 1 NC_011205.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883; XRE family transcriptional regulator 4280358 439851004505 SeD_A4437 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 XRE family transcriptional regulator YP_002217966.1 4279810 D 439851 CDS YP_002217967.1 198244377 complement(4280447..4280761) 1 NC_011205.1 identified by match to protein family HMM PF05336; match to protein family HMM TIGR02625; L-rhamnose 1-epimerase 4280761 rhaU 439851004506 rhaU Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-rhamnose 1-epimerase YP_002217967.1 4280447 R 439851 CDS YP_002217968.1 198242080 complement(4280758..4281906) 1 NC_011205.1 identified by match to protein family HMM PF00465; match to protein family HMM TIGR02638; lactaldehyde reductase 4281906 fucO 439851004507 fucO Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lactaldehyde reductase YP_002217968.1 4280758 R 439851 CDS YP_002217969.1 198243956 complement(4282033..4282860) 1 NC_011205.1 identified by match to protein family HMM PF00596; match to protein family HMM TIGR02624; rhamnulose-1-phosphate aldolase 4282860 rhaD 439851004508 rhaD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 rhamnulose-1-phosphate aldolase YP_002217969.1 4282033 R 439851 CDS YP_002217970.1 198245581 complement(4283004..4284263) 1 NC_011205.1 catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase 4284263 rhaA 439851004509 rhaA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-rhamnose isomerase YP_002217970.1 4283004 R 439851 CDS YP_002217971.1 198245223 complement(4284260..4285729) 1 NC_011205.1 catalyzes the ATP-dependent phosphorylation of rhamnulose; rhamnulokinase 4285729 rhaB 439851004510 rhaB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 rhamnulokinase YP_002217971.1 4284260 R 439851 CDS YP_002217972.1 198244592 4286017..4286853 1 NC_011205.1 activates the expression of the rhaBAD operon and rhaT gene; transcriptional activator RhaS 4286853 439851004511 SeD_A4443 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional activator RhaS YP_002217972.1 4286017 D 439851 CDS YP_002217973.1 198243593 4287006..4287854 1 NC_011205.1 activates the expression of rhaRS in response to L-rhamnose; transcriptional activator RhaR 4287854 439851004512 SeD_A4444 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional activator RhaR YP_002217973.1 4287006 D 439851 CDS YP_002217974.1 198244223 complement(4287851..4288885) 1 NC_011205.1 transports L-rhamnose and L-lyxose into the cell; rhamnose-proton symporter 4288885 439851004513 SeD_A4445 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 rhamnose-proton symporter YP_002217974.1 4287851 R 439851 CDS YP_002217975.1 198243239 4288889..4289020 1 NC_011205.1 hypothetical protein 4289020 439851004514 SeD_A4446 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217975.1 4288889 D 439851 CDS YP_002217976.1 198244122 4289055..4289168 1 NC_011205.1 identified by glimmer; hypothetical protein 4289168 439851004515 SeD_A4447 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217976.1 4289055 D 439851 CDS YP_002217977.1 198245104 4289363..4289479 1 NC_011205.1 identified by glimmer; hypothetical protein 4289479 439851004516 SeD_A4448 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217977.1 4289363 D 439851 CDS YP_002217978.1 198246003 4289516..4290187 1 NC_011205.1 identified by match to protein family HMM PF06178; oligogalacturonate-specific porin 4290187 439851004517 SeD_A4449 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oligogalacturonate-specific porin YP_002217978.1 4289516 D 439851 CDS YP_002217979.1 198245477 complement(4290345..4291652) 1 NC_011205.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; trap dicarboxylate transporter DctM subunit 4291652 439851004518 SeD_A4450 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 trap dicarboxylate transporter DctM subunit YP_002217979.1 4290345 R 439851 CDS YP_002217980.1 198245318 complement(4291645..4292160) 1 NC_011205.1 identified by match to protein family HMM PF04290; trap dicarboxylate transporter DctQ subunit 4292160 439851004519 SeD_A4451 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 trap dicarboxylate transporter DctQ subunit YP_002217980.1 4291645 R 439851 CDS YP_002217981.1 198242574 complement(4292179..4293162) 1 NC_011205.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; trap dicarboxylate transporter DctP subunit 4293162 439851004520 SeD_A4452 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 trap dicarboxylate transporter DctP subunit YP_002217981.1 4292179 R 439851 CDS YP_002217982.1 198242216 4293491..4294111 1 NC_011205.1 SodA; manganese binding; only present under aerobic conditions; destroys free radicals; superoxide dismutase 4294111 sodA 439851004521 sodA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 superoxide dismutase YP_002217982.1 4293491 D 439851 CDS YP_002217983.1 198243465 4294181..4294870 1 NC_011205.1 identified by match to protein family HMM PF03473; match to protein family HMM PF03475; hypothetical protein 4294870 439851004522 SeD_A4454 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217983.1 4294181 D 439851 CDS YP_002217984.1 198243213 4294882..4295277 1 NC_011205.1 inner membrane protein 4295277 439851004523 SeD_A4455 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002217984.1 4294882 D 439851 CDS YP_002217985.1 198245079 complement(4295328..4296701) 1 NC_011205.1 part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein 4296701 cpxA 439851004524 cpxA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 two-component sensor protein YP_002217985.1 4295328 R 439851 CDS YP_002217986.1 198245082 complement(4296698..4297396) 1 NC_011205.1 response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; DNA-binding transcriptional regulator CpxR 4297396 cpxR 439851004525 cpxR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator CpxR YP_002217986.1 4296698 R 439851 CDS YP_002217987.1 198243172 4297547..4298047 1 NC_011205.1 repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; periplasmic repressor CpxP 4298047 cpxP 439851004526 cpxP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 periplasmic repressor CpxP YP_002217987.1 4297547 D 439851 CDS YP_002217988.1 198244655 4298195..4299097 1 NC_011205.1 member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; ferrous iron efflux protein F 4299097 fieF 439851004527 fieF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ferrous iron efflux protein F YP_002217988.1 4298195 D 439851 CDS YP_002217989.1 198244053 4299282..4300244 1 NC_011205.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 4300244 pfkA 439851004528 pfkA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 6-phosphofructokinase YP_002217989.1 4299282 D 439851 CDS YP_002217990.1 198245929 4300448..4301437 1 NC_011205.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971; sulfate transporter subunit 4301437 439851004529 SeD_A4461 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfate transporter subunit YP_002217990.1 4300448 D 439851 CDS YP_002217991.1 198245540 4302557..4303891 1 NC_011205.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792; sugar (Glycoside-Pentoside-Hexuronide) transporter 4303891 gph 439851004531 gph Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sugar (Glycoside-Pentoside-Hexuronide) transporter YP_002217991.1 4302557 D 439851 CDS YP_002217992.1 198242499 4303902..4304861 1 NC_011205.1 phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; aminoimidazole riboside kinase 4304861 439851004532 SeD_A4464 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aminoimidazole riboside kinase YP_002217992.1 4303902 D 439851 CDS YP_002217993.1 198242276 4304871..4305911 1 NC_011205.1 identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase family protein 4305911 439851004533 SeD_A4465 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ADP-ribosylglycohydrolase family protein YP_002217993.1 4304871 D 439851 CDS YP_002217994.1 198243797 4305974..4306696 1 NC_011205.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 4306696 439851004534 SeD_A4466 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GntR family transcriptional regulator YP_002217994.1 4305974 D 439851 CDS YP_002217995.1 198244073 complement(4307201..4307551) 1 NC_011205.1 identified by match to protein family HMM PF07883; polyketide synthase 4307551 439851004537 SeD_A4469 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 polyketide synthase YP_002217995.1 4307201 R 439851 CDS YP_002217996.1 198244690 complement(4307565..4309115) 1 NC_011205.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; autoinducer-2 (AI-2) kinase 4309115 439851004538 SeD_A4470 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 autoinducer-2 (AI-2) kinase YP_002217996.1 4307565 R 439851 CDS YP_002217997.1 198243373 complement(4309244..4310203) 1 NC_011205.1 identified by match to protein family HMM PF04198; hypothetical protein 4310203 439851004539 SeD_A4471 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217997.1 4309244 R 439851 CDS YP_002217998.1 198243975 complement(4310331..4310474) 1 NC_011205.1 identified by glimmer; hypothetical protein 4310474 439851004540 SeD_A4473 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002217998.1 4310331 R 439851 CDS YP_002217999.1 198243982 4310460..4311995 1 NC_011205.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein ego 4311995 439851004541 SeD_A4472 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter ATP-binding protein ego YP_002217999.1 4310460 D 439851 CDS YP_002218000.1 198242058 4311989..4313032 1 NC_011205.1 identified by match to protein family HMM PF02653; ABC transporter permease 4313032 439851004542 SeD_A4474 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter permease YP_002218000.1 4311989 D 439851 CDS YP_002218001.1 198242677 4313032..4314030 1 NC_011205.1 identified by match to protein family HMM PF02653; ABC transporter permease 4314030 439851004543 SeD_A4475 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter permease YP_002218001.1 4313032 D 439851 CDS YP_002218002.1 198245841 4314038..4315081 1 NC_011205.1 hypothetical protein 4315081 439851004544 SeD_A4476 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218002.1 4314038 D 439851 CDS YP_002218003.1 198242064 4315110..4315985 1 NC_011205.1 identified by match to protein family HMM PF01791; aldolase 4315985 439851004545 SeD_A4477 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aldolase YP_002218003.1 4315110 D 439851 CDS YP_002218004.1 198242713 4316029..4316358 1 NC_011205.1 identified by match to protein family HMM PF03992; autoinducer-2 (AI-2) modifying protein LsrG 4316358 439851004546 SeD_A4478 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 autoinducer-2 (AI-2) modifying protein LsrG YP_002218004.1 4316029 D 439851 CDS YP_002218005.1 198244873 4316368..4317132 1 NC_011205.1 identified by match to protein family HMM PF00834; epimerase 4317132 439851004547 SeD_A4479 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 epimerase YP_002218005.1 4316368 D 439851 CDS YP_002218006.1 198244517 complement(4317224..4317991) 1 NC_011205.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 4317991 tpiA 439851004548 tpiA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 triosephosphate isomerase YP_002218006.1 4317224 R 439851 CDS YP_002218007.1 198246150 complement(4318104..4318700) 1 NC_011205.1 identified by match to protein family HMM PF07305; hypothetical protein 4318700 439851004549 SeD_A4481 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218007.1 4318104 R 439851 CDS YP_002218008.1 198245767 4318801..4319229 1 NC_011205.1 identified by match to protein family HMM PF05656; inner membrane protein 4319229 439851004550 SeD_A4482 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002218008.1 4318801 D 439851 CDS YP_002218009.1 198242443 complement(4319335..4320081) 1 NC_011205.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970; ferredoxin-NADP reductase 4320081 439851004551 SeD_A4483 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ferredoxin-NADP reductase YP_002218009.1 4319335 R 439851 CDS YP_002218010.1 198241797 complement(4320178..4321188) 1 NC_011205.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 4321188 glpX 439851004552 glpX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fructose 1,6-bisphosphatase II YP_002218010.1 4320178 R 439851 CDS YP_002218011.1 198243722 complement(4321300..4322808) 1 NC_011205.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 4322808 glpK 439851004553 glpK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycerol kinase YP_002218011.1 4321300 R 439851 CDS YP_002218012.1 198243248 complement(4322829..4323674) 1 NC_011205.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein 4323674 glpF 439851004554 glpF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycerol uptake facilitator protein YP_002218012.1 4322829 R 439851 CDS YP_002218013.1 198242308 4324073..4324312 1 NC_011205.1 identified by match to protein family HMM PF06005; hypothetical protein 4324312 439851004555 SeD_A4487 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218013.1 4324073 D 439851 CDS YP_002218014.1 198241874 complement(4324397..4324537) 1 NC_011205.1 identified by glimmer; hypothetical protein 4324537 439851004556 SeD_A4488 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218014.1 4324397 R 439851 CDS YP_002218015.1 198243443 complement(4324534..4325019) 1 NC_011205.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4325019 rraA 439851004557 rraA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribonuclease activity regulator protein RraA YP_002218015.1 4324534 R 439851 CDS YP_002218016.1 198243947 complement(4325112..4326041) 1 NC_011205.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 4326041 menA 439851004558 menA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_002218016.1 4325112 R 439851 CDS YP_002218017.1 198242037 complement(4326108..4327439) 1 NC_011205.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4327439 hslU 439851004559 hslU Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent protease ATP-binding subunit HslU YP_002218017.1 4326108 R 439851 CDS YP_002218018.1 198242693 complement(4327449..4327979) 1 NC_011205.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4327979 hslV 439851004560 hslV Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATP-dependent protease peptidase subunit YP_002218018.1 4327449 R 439851 CDS YP_002218019.1 198245289 complement(4328071..4329045) 1 NC_011205.1 identified by match to protein family HMM PF05036; match to protein family HMM TIGR02223; essential cell division protein FtsN 4329045 ftsN 439851004561 ftsN Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 essential cell division protein FtsN YP_002218019.1 4328071 R 439851 CDS YP_002218020.1 198245488 complement(4329139..4330164) 1 NC_011205.1 negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; DNA-binding transcriptional regulator CytR 4330164 cytR 439851004562 cytR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator CytR YP_002218020.1 4329139 R 439851 CDS YP_002218021.1 198244145 complement(4330319..4332517) 1 NC_011205.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 4332517 439851004563 SeD_A4495 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 primosome assembly protein PriA YP_002218021.1 4330319 R 439851 CDS YP_002218022.1 198244623 4332721..4332933 1 NC_011205.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 4332933 rpmE 439851004564 rpmE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L31 YP_002218022.1 4332721 D 439851 CDS YP_002218023.1 198242049 complement(4332978..4333640) 1 NC_011205.1 identified by match to protein family HMM TIGR02117; hypothetical protein 4333640 439851004565 SeD_A4497 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218023.1 4332978 R 439851 CDS YP_002218024.1 198242860 complement(4333841..4335631) 1 NC_011205.1 identified by match to protein family HMM PF05935; arylsulfotransferase 4335631 439851004566 SeD_A4498 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arylsulfotransferase YP_002218024.1 4333841 R 439851 CDS YP_002218025.1 198244253 4335516..4335677 1 NC_011205.1 identified by glimmer; hypothetical protein 4335677 439851004567 SeD_A4499 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218025.1 4335516 D 439851 CDS YP_002218026.1 198244720 complement(4336088..4336405) 1 NC_011205.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 4336405 metJ 439851004568 metJ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional repressor protein MetJ YP_002218026.1 4336088 R 439851 CDS YP_002218027.1 198243263 4336670..4337830 1 NC_011205.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 4337830 metB 439851004569 metB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cystathionine gamma-synthase YP_002218027.1 4336670 D 439851 CDS YP_002218028.1 198243768 4337833..4340265 1 NC_011205.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 4340265 metL 439851004570 metL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional aspartate kinase II/homoserine dehydrogenase II YP_002218028.1 4337833 D 439851 CDS YP_002218029.1 198242223 complement(4340381..4341238) 1 NC_011205.1 identified by match to protein family HMM PF00924; match to protein family HMM PF05552; MscS Mechanosensitive ion channel 4341238 439851004571 SeD_A4503 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 MscS Mechanosensitive ion channel YP_002218029.1 4340381 R 439851 CDS YP_002218030.1 198242875 complement(4341241..4342239) 1 NC_011205.1 hypothetical protein 4342239 439851004572 SeD_A4504 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218030.1 4341241 R 439851 CDS YP_002218031.1 198244844 4343734..4345290 1 NC_011205.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872; 5'-nucleotidase 4345290 439851004574 SeD_A4507 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 5'-nucleotidase YP_002218031.1 4343734 D 439851 CDS YP_002218032.1 198245167 4345555..4346793 1 NC_011205.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 4346793 glyA 439851004575 glyA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 serine hydroxymethyltransferase YP_002218032.1 4345555 D 439851 CDS YP_002218033.1 198243064 complement(4347841..4349322) 1 NC_011205.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 4349322 439851004576 SeD_A4510 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GntR family transcriptional regulator YP_002218033.1 4347841 R 439851 CDS YP_002218034.1 198243713 4349288..4349491 1 NC_011205.1 identified by glimmer; hypothetical protein 4349491 439851004577 SeD_A4509 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218034.1 4349288 D 439851 CDS YP_002218035.1 198241770 4349601..4350491 1 NC_011205.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 4350491 metF 439851004578 metF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 5,10-methylenetetrahydrofolate reductase YP_002218035.1 4349601 D 439851 CDS YP_002218036.1 198242421 4350656..4352836 1 NC_011205.1 identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198; catalase/peroxidase HPI 4352836 katG 439851004579 katG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 catalase/peroxidase HPI YP_002218036.1 4350656 D 439851 CDS YP_002218037.1 198245022 complement(4352894..4353517) 1 NC_011205.1 identified by match to protein family HMM PF06940; NADH:ubiquinone oxidoreductase 4353517 439851004580 SeD_A4513 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NADH:ubiquinone oxidoreductase YP_002218037.1 4352894 R 439851 CDS YP_002218038.1 198245651 complement(4353776..4354879) 1 NC_011205.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 4354879 gldA 439851004581 gldA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycerol dehydrogenase YP_002218038.1 4353776 R 439851 CDS YP_002218039.1 198243789 complement(4354891..4355553) 1 NC_011205.1 similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase 4355553 fsaB 439851004582 fsaB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fructose-6-phosphate aldolase YP_002218039.1 4354891 R 439851 CDS YP_002218040.1 198244415 complement(4355564..4358053) 1 NC_011205.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; multiphosphoryl transfer protein 2 4358053 439851004583 SeD_A4516 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multiphosphoryl transfer protein 2 YP_002218040.1 4355564 R 439851 CDS YP_002218041.1 198243942 4358374..4359453 1 NC_011205.1 FrwC with FrwB, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; forms translocation channel and contains the specific substrate-binding site; fructose-like permease EIIC subunit 2 4359453 439851004584 SeD_A4517 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fructose-like permease EIIC subunit 2 YP_002218041.1 4358374 D 439851 CDS YP_002218042.1 198244443 4359468..4359788 1 NC_011205.1 FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS; PTS system fructose-like transporter subunit EIIB 4359788 439851004585 SeD_A4518 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system fructose-like transporter subunit EIIB YP_002218042.1 4359468 D 439851 CDS YP_002218043.1 198242547 4359887..4362184 1 NC_011205.1 involved in production of D-lactate from glucose under microaerobic conditions; cytoplasmic protein; formate acetyltransferase 2 4362184 pflD 439851004586 pflD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate acetyltransferase 2 YP_002218043.1 4359887 D 439851 CDS YP_002218044.1 198242232 4362150..4363028 1 NC_011205.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494; pyruvate formate lyase II activase 4363028 439851004587 SeD_A4520 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pyruvate formate lyase II activase YP_002218044.1 4362150 D 439851 CDS YP_002218045.1 198243277 4363030..4363383 1 NC_011205.1 FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog; fructose-like phosphotransferase EIIB subunit 3 4363383 439851004588 SeD_A4521 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fructose-like phosphotransferase EIIB subunit 3 YP_002218045.1 4363030 D 439851 CDS YP_002218046.1 198243018 complement(4363370..4364221) 1 NC_011205.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 4364221 439851004589 SeD_A4522 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 AraC family transcriptional regulator YP_002218046.1 4363370 R 439851 CDS YP_002218047.1 198244995 complement(4364382..4366115) 1 NC_011205.1 identified by match to protein family HMM PF00884; hypothetical protein 4366115 439851004590 SeD_A4523 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218047.1 4364382 R 439851 CDS YP_002218048.1 198245978 complement(4366326..4368977) 1 NC_011205.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4368977 ppc 439851004591 ppc Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoenolpyruvate carboxylase YP_002218048.1 4366326 R 439851 CDS YP_002218049.1 198245503 complement(4369346..4370497) 1 NC_011205.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 4370497 argE 439851004592 argE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetylornithine deacetylase YP_002218049.1 4369346 R 439851 CDS YP_002218050.1 198242509 4370586..4371590 1 NC_011205.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 4371590 argC 439851004593 argC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N-acetyl-gamma-glutamyl-phosphate reductase YP_002218050.1 4370586 D 439851 CDS YP_002218051.1 198241960 4371601..4372374 1 NC_011205.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4372374 argB 439851004594 argB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetylglutamate kinase YP_002218051.1 4371601 D 439851 CDS YP_002218052.1 198243996 4372492..4373868 1 NC_011205.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 4373868 argH 439851004595 argH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 argininosuccinate lyase YP_002218052.1 4372492 D 439851 CDS YP_002218053.1 198246077 4374152..4375069 1 NC_011205.1 Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR 4375069 oxyR 439851004597 oxyR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator OxyR YP_002218053.1 4374152 D 439851 CDS YP_002218054.1 198242526 complement(4375052..4376464) 1 NC_011205.1 catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 4376464 sthA 439851004598 sthA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 soluble pyridine nucleotide transhydrogenase YP_002218054.1 4375052 R 439851 CDS YP_002218055.1 198243167 4377302..4377661 1 NC_011205.1 identified by match to protein family HMM PF07226; hypothetical protein 4377661 439851004600 SeD_A4533 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218055.1 4377302 D 439851 CDS YP_002218056.1 198243648 complement(4377708..4378808) 1 NC_011205.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 4378808 trmA 439851004601 trmA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA (uracil-5-)-methyltransferase YP_002218056.1 4377708 R 439851 CDS YP_002218057.1 198243511 4379182..4381026 1 NC_011205.1 involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; vitamin B12/cobalamin outer membrane transporter 4381026 btuB 439851004602 btuB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 vitamin B12/cobalamin outer membrane transporter YP_002218057.1 4379182 D 439851 CDS YP_002218058.1 198241754 4381040..4381822 1 NC_011205.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 4381822 murI 439851004603 murI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamate racemase YP_002218058.1 4381040 D 439851 CDS YP_002218059.1 198242838 4384083..4384199 1 NC_011205.1 identified by glimmer; hypothetical protein 4384199 439851004607 SeD_A4541 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218059.1 4384083 D 439851 CDS YP_002218060.1 198244381 4387555..4388583 1 NC_011205.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4388583 murB 439851004610 murB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UDP-N-acetylenolpyruvoylglucosamine reductase YP_002218060.1 4387555 D 439851 CDS YP_002218061.1 198245209 4388580..4389542 1 NC_011205.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 4389542 439851004611 SeD_A4546 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 biotin--protein ligase YP_002218061.1 4388580 D 439851 CDS YP_002218062.1 198243487 complement(4389577..4390527) 1 NC_011205.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 4390527 coaA 439851004612 coaA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pantothenate kinase YP_002218062.1 4389577 R 439851 CDS YP_002218063.1 198242988 4391486..4392670 1 NC_011205.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 4392670 tuf1 439851004617 tuf1 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 elongation factor Tu YP_002218063.1 4391486 D 439851 CDS YP_002218064.1 198242551 4392900..4393283 1 NC_011205.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 4393283 secE 439851004618 secE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 preprotein translocase subunit SecE YP_002218064.1 4392900 D 439851 CDS YP_002218065.1 198241913 4393285..4393830 1 NC_011205.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 4393830 nusG 439851004619 nusG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcription antitermination protein NusG YP_002218065.1 4393285 D 439851 CDS YP_002218066.1 198242048 4393988..4394416 1 NC_011205.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 4394416 rplK 439851004620 rplK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L11 YP_002218066.1 4393988 D 439851 CDS YP_002218067.1 198246081 4394420..4395124 1 NC_011205.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 4395124 rplA 439851004621 rplA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L1 YP_002218067.1 4394420 D 439851 CDS YP_002218068.1 198245252 4395544..4396041 1 NC_011205.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4396041 rplJ 439851004622 rplJ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L10 YP_002218068.1 4395544 D 439851 CDS YP_002218069.1 198245041 4396108..4396473 1 NC_011205.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 4396473 rplL 439851004623 rplL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L7/L12 YP_002218069.1 4396108 D 439851 CDS YP_002218070.1 198242604 4396791..4400819 1 NC_011205.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4400819 rpoB 439851004625 rpoB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-directed RNA polymerase subunit beta YP_002218070.1 4396791 D 439851 CDS YP_002218071.1 198245606 4400896..4405119 1 NC_011205.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4405119 rpoC 439851004626 rpoC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-directed RNA polymerase subunit beta' YP_002218071.1 4400896 D 439851 CDS YP_002218072.1 198244649 4405202..4405483 1 NC_011205.1 inner membrane protein 4405483 439851004627 SeD_A4562 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002218072.1 4405202 D 439851 CDS YP_002218073.1 198244014 complement(4405485..4405919) 1 NC_011205.1 hypothetical protein 4405919 439851004628 SeD_A4563 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218073.1 4405485 R 439851 CDS YP_002218074.1 198244508 4406209..4407237 1 NC_011205.1 hypothetical protein 4407237 439851004629 SeD_A4564 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218074.1 4406209 D 439851 CDS YP_002218075.1 198243870 complement(4407458..4408591) 1 NC_011205.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 4408591 thiH 439851004630 thiH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiamine biosynthesis protein ThiH YP_002218075.1 4407458 R 439851 CDS YP_002218076.1 198241884 complement(4408588..4409373) 1 NC_011205.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 4409373 thiG 439851004631 thiG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiazole synthase YP_002218076.1 4408588 R 439851 CDS YP_002218077.1 198242596 complement(4409360..4409560) 1 NC_011205.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS 4409560 thiS 439851004632 thiS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sulfur carrier protein ThiS YP_002218077.1 4409360 R 439851 CDS YP_002218078.1 198245874 complement(4409541..4410299) 1 NC_011205.1 identified by match to protein family HMM PF00899; match to protein family HMM PF05237; thiazole biosynthesis adenylyltransferase ThiF 4410299 thiF 439851004633 thiF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiazole biosynthesis adenylyltransferase ThiF YP_002218078.1 4409541 R 439851 CDS YP_002218079.1 198245244 complement(4410292..4410927) 1 NC_011205.1 catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase 4410927 thiE 439851004634 thiE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiamine-phosphate pyrophosphorylase YP_002218079.1 4410292 R 439851 CDS YP_002218080.1 198244147 complement(4410927..4412822) 1 NC_011205.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 4412822 thiC 439851004635 thiC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiamine biosynthesis protein ThiC YP_002218080.1 4410927 R 439851 CDS YP_002218081.1 198245173 complement(4413186..4413674) 1 NC_011205.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 4413674 439851004636 SeD_A4572 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anti-RNA polymerase sigma 70 factor YP_002218081.1 4413186 R 439851 CDS YP_002218082.1 198242203 4413767..4414540 1 NC_011205.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 4414540 nudC 439851004637 nudC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NADH pyrophosphatase YP_002218082.1 4413767 D 439851 CDS YP_002218083.1 198242852 4414581..4415645 1 NC_011205.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 4415645 hemE 439851004638 hemE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 uroporphyrinogen decarboxylase YP_002218083.1 4414581 D 439851 CDS YP_002218084.1 198243306 4415655..4416326 1 NC_011205.1 Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures; endonuclease V 4416326 nfi 439851004639 nfi Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 endonuclease V YP_002218084.1 4415655 D 439851 CDS YP_002218085.1 198243806 4416368..4416958 1 NC_011205.1 identified by match to protein family HMM PF04222; hypothetical protein 4416958 439851004640 SeD_A4576 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218085.1 4416368 D 439851 CDS YP_002218086.1 198243874 4417145..4417417 1 NC_011205.1 histone-like DNA-binding protein; transcriptional regulator HU subunit alpha 4417417 hupA 439851004641 hupA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator HU subunit alpha YP_002218086.1 4417145 D 439851 CDS YP_002218087.1 198244783 4417429..4418121 1 NC_011205.1 identified by match to protein family HMM PF07356; hypothetical protein 4418121 439851004642 SeD_A4578 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218087.1 4417429 D 439851 CDS YP_002218088.1 198245387 complement(4418163..4418618) 1 NC_011205.1 zinc resistance protein 4418618 zraP 439851004643 zraP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 zinc resistance protein YP_002218088.1 4418163 R 439851 CDS YP_002218089.1 198245723 4418872..4420269 1 NC_011205.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor protein ZraS 4420269 439851004644 SeD_A4580 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sensor protein ZraS YP_002218089.1 4418872 D 439851 CDS YP_002218090.1 198244110 4420275..4421600 1 NC_011205.1 DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; transcriptional regulatory protein ZraR 4421600 439851004645 SeD_A4581 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulatory protein ZraR YP_002218090.1 4420275 D 439851 CDS YP_002218091.1 198241778 complement(4421597..4422886) 1 NC_011205.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 4422886 purD 439851004646 purD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoribosylamine--glycine ligase YP_002218091.1 4421597 R 439851 CDS YP_002218092.1 198244601 complement(4422902..4424491) 1 NC_011205.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4424491 purH 439851004647 purH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_002218092.1 4422902 R 439851 CDS YP_002218093.1 198245136 complement(4430295..4430732) 1 NC_011205.1 identified by match to protein family HMM PF00583; hypothetical protein 4430732 439851004653 SeD_A4590 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218093.1 4430295 R 439851 CDS YP_002218094.1 198242879 4430889..4431818 1 NC_011205.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 4431818 metA 439851004654 metA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 homoserine O-succinyltransferase YP_002218094.1 4430889 D 439851 CDS YP_002218095.1 198242205 4432084..4433688 1 NC_011205.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4433688 aceB 439851004655 aceB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 malate synthase YP_002218095.1 4432084 D 439851 CDS YP_002218096.1 198243862 4433720..4435024 1 NC_011205.1 identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346; isocitrate lyase 4435024 aceA 439851004656 aceA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 isocitrate lyase YP_002218096.1 4433720 D 439851 CDS YP_002218097.1 198245666 4435126..4436877 1 NC_011205.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 4436877 aceK 439851004658 aceK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional isocitrate dehydrogenase kinase/phosphatase protein YP_002218097.1 4435126 D 439851 CDS YP_002218098.1 198242170 complement(4436841..4437275) 1 NC_011205.1 identified by match to protein family HMM PF06171; hypothetical protein 4437275 439851004659 SeD_A4596 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218098.1 4436841 R 439851 CDS YP_002218099.1 198245927 complement(4437259..4438083) 1 NC_011205.1 regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; transcriptional repressor IclR 4438083 439851004660 SeD_A4597 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional repressor IclR YP_002218099.1 4437259 R 439851 CDS YP_002218100.1 198245127 complement(4438207..4438338) 1 NC_011205.1 identified by glimmer; hypothetical protein 4438338 439851004661 SeD_A4598 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218100.1 4438207 R 439851 CDS YP_002218101.1 198242630 4438387..4442070 1 NC_011205.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4442070 metH 439851004662 metH Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 B12-dependent methionine synthase YP_002218101.1 4438387 D 439851 CDS YP_002218102.1 198242136 4442196..4442315 1 NC_011205.1 identified by glimmer; hypothetical protein 4442315 439851004663 SeD_A4600 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218102.1 4442196 D 439851 CDS YP_002218103.1 198244465 4442337..4443968 1 NC_011205.1 identified by match to protein family HMM PF02690; match to protein family HMM TIGR00704; match to protein family HMM TIGR01013; sodium-dependent inorganic phosphate 4443968 439851004664 SeD_A4601 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sodium-dependent inorganic phosphate YP_002218103.1 4442337 D 439851 CDS YP_002218104.1 198244607 4444940..4445479 1 NC_011205.1 nucleoprotein/polynucleotide-associated enzyme 4445479 439851004666 SeD_A4603 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nucleoprotein/polynucleotide-associated enzyme YP_002218104.1 4444940 D 439851 CDS YP_002218105.1 198242968 4445526..4446395 1 NC_011205.1 catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; 23S rRNA pseudouridine synthase F 4446395 439851004667 SeD_A4604 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 23S rRNA pseudouridine synthase F YP_002218105.1 4445526 D 439851 CDS YP_002218106.1 198244997 complement(4446392..4446664) 1 NC_011205.1 hypothetical protein 4446664 439851004668 SeD_A4605 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218106.1 4446392 R 439851 CDS YP_002218107.1 198243335 complement(4446727..4447485) 1 NC_011205.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family regulatory protein 4447485 439851004669 SeD_A4606 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DeoR family regulatory protein YP_002218107.1 4446727 R 439851 CDS YP_002218108.1 198246134 complement(4447472..4448335) 1 NC_011205.1 identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; hypothetical protein 4448335 439851004670 SeD_A4607 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218108.1 4447472 R 439851 CDS YP_002218109.1 198245137 complement(4448352..4449191) 1 NC_011205.1 hypothetical protein 4449191 439851004671 SeD_A4608 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218109.1 4448352 R 439851 CDS YP_002218110.1 198242371 complement(4449215..4450804) 1 NC_011205.1 hypothetical protein 4450804 439851004672 SeD_A4609 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218110.1 4449215 R 439851 CDS YP_002218111.1 198241893 4451054..4451173 1 NC_011205.1 identified by glimmer; hypothetical protein 4451173 439851004673 SeD_A4610 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218111.1 4451054 D 439851 CDS YP_002218112.1 198243735 complement(4451233..4451961) 1 NC_011205.1 hypothetical protein 4451961 439851004674 SeD_A4611 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218112.1 4451233 R 439851 CDS YP_002218113.1 198242652 4453323..4453451 1 NC_011205.1 identified by glimmer; hypothetical protein 4453451 439851004675 SeD_A4612 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218113.1 4453323 D 439851 CDS YP_002218114.1 198244427 4453405..4453752 1 NC_011205.1 identified by match to protein family HMM PF08765; DNA-binding protein RdgB 4453752 439851004676 SeD_A4613 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding protein RdgB YP_002218114.1 4453405 D 439851 CDS YP_002218115.1 198243882 complement(4453883..4455232) 1 NC_011205.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase 4455232 lysC 439851004677 lysC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aspartate kinase YP_002218115.1 4453883 R 439851 CDS YP_002218116.1 198242122 4455620..4457269 1 NC_011205.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 4457269 pgi 439851004678 pgi Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucose-6-phosphate isomerase YP_002218116.1 4455620 D 439851 CDS YP_002218117.1 198243573 4457710..4457955 1 NC_011205.1 hypothetical protein 4457955 439851004679 SeD_A4616 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218117.1 4457710 D 439851 CDS YP_002218118.1 198242913 4458019..4458657 1 NC_011205.1 hypothetical protein 4458657 439851004680 SeD_A4617 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218118.1 4458019 D 439851 CDS YP_002218119.1 198243530 4458654..4459391 1 NC_011205.1 identified by match to protein family HMM PF06251; hypothetical protein 4459391 439851004681 SeD_A4618 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218119.1 4458654 D 439851 CDS YP_002218120.1 198246178 4459391..4461487 1 NC_011205.1 identified by match to protein family HMM PF06082; lipoprotein 4461487 439851004682 SeD_A4619 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein YP_002218120.1 4459391 D 439851 CDS YP_002218121.1 198244568 4461630..4462040 1 NC_011205.1 identified by match to protein family HMM PF06146; phosphate-starvation-inducible protein PsiE 4462040 439851004683 SeD_A4620 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphate-starvation-inducible protein PsiE YP_002218121.1 4461630 D 439851 CDS YP_002218122.1 198242634 complement(4462206..4463096) 1 NC_011205.1 with MalKFE is involved in the transport of maltose into the cell; maltose transporter permease 4463096 malG 439851004684 malG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 maltose transporter permease YP_002218122.1 4462206 R 439851 CDS YP_002218123.1 198245299 complement(4463111..4464655) 1 NC_011205.1 with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein 4464655 malF 439851004685 malF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 maltose transporter membrane protein YP_002218123.1 4463111 R 439851 CDS YP_002218124.1 198243693 complement(4464787..4465977) 1 NC_011205.1 functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter periplasmic protein 4465977 malE 439851004686 malE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 maltose ABC transporter periplasmic protein YP_002218124.1 4464787 R 439851 CDS YP_002218125.1 198241759 4466339..4467448 1 NC_011205.1 with malEFG is involved in import of maltose/maltodextrin; maltose/maltodextrin transporter ATP-binding protein 4467448 malK 439851004687 malK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 maltose/maltodextrin transporter ATP-binding protein YP_002218125.1 4466339 D 439851 CDS YP_002218126.1 198246053 4467537..4468895 1 NC_011205.1 porin involved in the transport of maltose and maltodextrins; maltoporin 4468895 lamB 439851004688 lamB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 maltoporin YP_002218126.1 4467537 D 439851 CDS YP_002218127.1 198244576 4469059..4469976 1 NC_011205.1 identified by match to protein family HMM PF07148; maltose regulon periplasmic protein 4469976 malM 439851004689 malM Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 maltose regulon periplasmic protein YP_002218127.1 4469059 D 439851 CDS YP_002218128.1 198242467 4470157..4470654 1 NC_011205.1 catalyzes the formation of 4-hydroxybenzoate from chorismate; chorismate pyruvate lyase 4470654 ubiC 439851004690 ubiC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chorismate pyruvate lyase YP_002218128.1 4470157 D 439851 CDS YP_002218129.1 198241986 4470668..4471540 1 NC_011205.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 4471540 ubiA 439851004691 ubiA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-hydroxybenzoate octaprenyltransferase YP_002218129.1 4470668 D 439851 CDS YP_002218130.1 198245431 complement(4471639..4474059) 1 NC_011205.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 4474059 439851004692 SeD_A4629 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glycerol-3-phosphate acyltransferase YP_002218130.1 4471639 R 439851 CDS YP_002218131.1 198242643 4474230..4474598 1 NC_011205.1 identified by match to protein family HMM PF01219; diacylglycerol kinase 4474598 dgkA 439851004693 dgkA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 diacylglycerol kinase YP_002218131.1 4474230 D 439851 CDS YP_002218132.1 198244996 4474707..4475315 1 NC_011205.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 4475315 lexA 439851004694 lexA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LexA repressor YP_002218132.1 4474707 D 439851 CDS YP_002218133.1 198244530 4475494..4476819 1 NC_011205.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; DNA-damage-inducible SOS response protein 4476819 439851004695 SeD_A4632 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-damage-inducible SOS response protein YP_002218133.1 4475494 D 439851 CDS YP_002218134.1 198243459 4476801..4476929 1 NC_011205.1 hypothetical protein 4476929 439851004696 SeD_A4633 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218134.1 4476801 D 439851 CDS YP_002218135.1 198243326 4476948..4477160 1 NC_011205.1 unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential; stress-response protein 4477160 439851004697 SeD_A4634 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 stress-response protein YP_002218135.1 4476948 D 439851 CDS YP_002218136.1 198244413 complement(4477259..4477774) 1 NC_011205.1 Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB; zinc uptake transcriptional repressor 4477774 439851004698 SeD_A4635 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 zinc uptake transcriptional repressor YP_002218136.1 4477259 R 439851 CDS YP_002218137.1 198244460 4478021..4479331 1 NC_011205.1 conjugative transfer protein 4479331 439851004699 SeD_A4636 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 conjugative transfer protein YP_002218137.1 4478021 D 439851 CDS YP_002218138.1 198244614 4479419..4480417 1 NC_011205.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742; tRNA-dihydrouridine synthase A 4480417 439851004700 SeD_A4637 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA-dihydrouridine synthase A YP_002218138.1 4479419 D 439851 CDS YP_002218139.1 198243595 complement(4481002..4481985) 1 NC_011205.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; quinone oxidoreductase, NADPH-dependent 4481985 439851004702 SeD_A4639 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 quinone oxidoreductase, NADPH-dependent YP_002218139.1 4481002 R 439851 CDS YP_002218140.1 198242008 4482050..4483465 1 NC_011205.1 unwinds double stranded DNA; replicative DNA helicase 4483465 dnaB 439851004703 dnaB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 replicative DNA helicase YP_002218140.1 4482050 D 439851 CDS YP_002218141.1 198244007 4483497..4484576 1 NC_011205.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 4484576 alr 439851004704 alr Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 alanine racemase YP_002218141.1 4483497 D 439851 CDS YP_002218142.1 198242052 complement(4484547..4484678) 1 NC_011205.1 identified by glimmer; hypothetical protein 4484678 439851004705 SeD_A4642 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218142.1 4484547 R 439851 CDS YP_002218143.1 198244101 4484762..4485955 1 NC_011205.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4485955 tyrB 439851004706 tyrB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aromatic amino acid aminotransferase YP_002218143.1 4484762 D 439851 CDS YP_002218144.1 198242510 4486142..4486855 1 NC_011205.1 Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; acid phosphatase/phosphotransferase 4486855 aphA 439851004707 aphA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acid phosphatase/phosphotransferase YP_002218144.1 4486142 D 439851 CDS YP_002218145.1 198242973 4486984..4487400 1 NC_011205.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 4487400 439851004708 SeD_A4645 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218145.1 4486984 D 439851 CDS YP_002218146.1 198245594 4487403..4487759 1 NC_011205.1 identified by match to protein family HMM PF04237; hypothetical protein 4487759 439851004709 SeD_A4646 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218146.1 4487403 D 439851 CDS YP_002218147.1 198245993 complement(4487760..4488098) 1 NC_011205.1 inner membrane protein 4488098 439851004710 SeD_A4647 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002218147.1 4487760 R 439851 CDS YP_002218148.1 198243464 complement(4488085..4488528) 1 NC_011205.1 hypothetical protein 4488528 439851004711 SeD_A4648 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218148.1 4488085 R 439851 CDS YP_002218149.1 198245071 complement(4488672..4491497) 1 NC_011205.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 4491497 uvrA 439851004712 uvrA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 excinuclease ABC subunit A YP_002218149.1 4488672 R 439851 CDS YP_002218150.1 198242486 4491745..4492275 1 NC_011205.1 binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein 4492275 ssb 439851004713 ssb Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 single-stranded DNA-binding protein YP_002218150.1 4491745 D 439851 CDS YP_002218151.1 198243028 4492666..4492806 1 NC_011205.1 identified by glimmer; hypothetical protein 4492806 439851004714 SeD_A4651 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218151.1 4492666 D 439851 CDS YP_002218152.1 198245001 4493316..4493948 1 NC_011205.1 identified by glimmer; hypothetical protein 4493948 439851004715 SeD_A4652 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218152.1 4493316 D 439851 CDS YP_002218153.1 198244686 4493945..4495333 1 NC_011205.1 methyl-accepting chemotaxis protein 4495333 439851004716 SeD_A4653 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methyl-accepting chemotaxis protein YP_002218153.1 4493945 D 439851 CDS YP_002218154.1 198243772 4495716..4496642 1 NC_011205.1 identified by match to protein family HMM PF02321; ABC exporter outer membrane component 4496642 439851004717 SeD_A4654 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC exporter outer membrane component YP_002218154.1 4495716 D 439851 CDS YP_002218155.1 198244512 4496666..4497916 1 NC_011205.1 hypothetical protein 4497916 439851004718 SeD_A4655 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218155.1 4496666 D 439851 CDS YP_002218156.1 198244107 4497933..4514612 1 NC_011205.1 hypothetical protein 4514612 439851004719 SeD_A4656 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218156.1 4497933 D 439851 CDS YP_002218157.1 198244574 4514652..4516718 1 NC_011205.1 contain an N- double-glycine peptidase domain; identified by match to protein family HMM PF00005; bacteriocin/lantibiotic ABC exporter 4516718 439851004720 SeD_A4657 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bacteriocin/lantibiotic ABC exporter YP_002218157.1 4514652 D 439851 CDS YP_002218158.1 198246041 4517840..4519441 1 NC_011205.1 identified by match to protein family HMM PF00563; cyclic diguanylate phosphodiesterase (EAL) domain-containing protein 4519441 439851004722 SeD_A4659 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cyclic diguanylate phosphodiesterase (EAL) domain-containing protein YP_002218158.1 4517840 D 439851 CDS YP_002218159.1 198242993 complement(4519429..4519752) 1 NC_011205.1 regulates genes involved in response to oxidative stress; DNA-binding transcriptional regulator SoxS 4519752 439851004723 SeD_A4660 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator SoxS YP_002218159.1 4519429 R 439851 CDS YP_002218160.1 198242239 4519839..4520297 1 NC_011205.1 identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR01950; redox-sensitive transcriptional activator SoxR 4520297 soxR 439851004724 soxR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 redox-sensitive transcriptional activator SoxR YP_002218160.1 4519839 D 439851 CDS YP_002218161.1 198243445 4520590..4521258 1 NC_011205.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase, N- domain 4521258 439851004725 SeD_A4662 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathione S-transferase, N- domain YP_002218161.1 4520590 D 439851 CDS YP_002218162.1 198243743 4521606..4522955 1 NC_011205.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; inorganic anion transporter, sulfate permease (SulP) family 4522955 439851004726 SeD_A4663 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inorganic anion transporter, sulfate permease (SulP) family YP_002218162.1 4521606 D 439851 CDS YP_002218163.1 198242123 4523060..4524751 1 NC_011205.1 identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831; Na+/H+ antiporter 4524751 439851004727 SeD_A4664 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Na+/H+ antiporter YP_002218163.1 4523060 D 439851 CDS YP_002218164.1 198243066 complement(4524846..4525733) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family regulatory protein 4525733 439851004728 SeD_A4666 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LysR family regulatory protein YP_002218164.1 4524846 R 439851 CDS YP_002218165.1 198245809 4525732..4526247 1 NC_011205.1 identified by match to protein family HMM PF03788; LrgA family protein 4526247 439851004729 SeD_A4665 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LrgA family protein YP_002218165.1 4525732 D 439851 CDS YP_002218166.1 198245192 4526240..4526929 1 NC_011205.1 identified by match to protein family HMM PF04172; LrgB family protein 4526929 439851004730 SeD_A4667 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 LrgB family protein YP_002218166.1 4526240 D 439851 CDS YP_002218167.1 198242818 complement(4526968..4528617) 1 NC_011205.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 4528617 actP 439851004731 actP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetate permease YP_002218167.1 4526968 R 439851 CDS YP_002218168.1 198242327 complement(4528614..4528928) 1 NC_011205.1 identified by match to protein family HMM PF04341; hypothetical protein 4528928 439851004732 SeD_A4669 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218168.1 4528614 R 439851 CDS YP_002218169.1 198242986 complement(4529168..4531126) 1 NC_011205.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 4531126 acsA 439851004733 acsA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acetyl-CoA synthetase YP_002218169.1 4529168 R 439851 CDS YP_002218170.1 198243783 4531558..4532994 1 NC_011205.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 4532994 nrfA 439851004734 nrfA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome c552 YP_002218170.1 4531558 D 439851 CDS YP_002218171.1 198243399 4533106..4533672 1 NC_011205.1 part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; cytochrome c nitrite reductase pentaheme subunit 4533672 nrfB 439851004735 nrfB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome c nitrite reductase pentaheme subunit YP_002218171.1 4533106 D 439851 CDS YP_002218172.1 198241756 4533669..4534340 1 NC_011205.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01409; match to protein family HMM TIGR03149; cytochrome c nitrite reductase, Fe-S protein 4534340 nrfC 439851004736 nrfC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome c nitrite reductase, Fe-S protein YP_002218172.1 4533669 D 439851 CDS YP_002218173.1 198243527 4534337..4535293 1 NC_011205.1 identified by match to protein family HMM PF03916; match to protein family HMM TIGR03148; cytochrome c nitrite reductase, NrfD subunit 4535293 nrfD 439851004737 nrfD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytochrome c nitrite reductase, NrfD subunit YP_002218173.1 4534337 D 439851 CDS YP_002218174.1 198243149 4535286..4537508 1 NC_011205.1 with NrfF and NrfG catalyzes the insertion of heme into cytochrome c552; heme lyase subunit NrfE 4537508 ccmF 439851004738 ccmF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 heme lyase subunit NrfE YP_002218174.1 4535286 D 439851 CDS YP_002218175.1 198245905 4537505..4538125 1 NC_011205.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; formate-dependent nitrite reductase complex subunit NrfG 4538125 439851004739 SeD_A4676 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 formate-dependent nitrite reductase complex subunit NrfG YP_002218175.1 4537505 D 439851 CDS YP_002218176.1 198241752 4538470..4539780 1 NC_011205.1 carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system; glutamate/aspartate:proton symporter 4539780 gltP 439851004740 gltP Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutamate/aspartate:proton symporter YP_002218176.1 4538470 D 439851 CDS YP_002218177.1 198244033 complement(4539938..4540627) 1 NC_011205.1 identified by match to protein family HMM PF08238; tetratricopeptide repeat protein 4540627 439851004741 SeD_A4678 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tetratricopeptide repeat protein YP_002218177.1 4539938 R 439851 CDS YP_002218178.1 198243921 complement(4543317..4544225) 1 NC_011205.1 identified by match to protein family HMM PF05118; membrane-bound beta-hydroxylase 4544225 439851004744 SeD_A4681 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 membrane-bound beta-hydroxylase YP_002218178.1 4543317 R 439851 CDS YP_002218179.1 198244447 complement(4544483..4544917) 1 NC_011205.1 PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role; aminoalkylphosphonic acid N-acetyltransferase 4544917 439851004745 SeD_A4682 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aminoalkylphosphonic acid N-acetyltransferase YP_002218179.1 4544483 R 439851 CDS YP_002218180.1 198244943 complement(4545069..4545512) 1 NC_011205.1 identified by match to protein family HMM PF00903; match to protein family HMM PF06983; hypothetical protein 4545512 439851004746 SeD_A4683 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218180.1 4545069 R 439851 CDS YP_002218181.1 198243014 complement(4545632..4545967) 1 NC_011205.1 identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686; hypothetical protein 4545967 phnA 439851004747 phnA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218181.1 4545632 R 439851 CDS YP_002218182.1 198243505 4546435..4547220 1 NC_011205.1 identified by match to protein family HMM PF08946; proline/betaine transporter 4547220 439851004748 SeD_A4685 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 proline/betaine transporter YP_002218182.1 4546435 D 439851 CDS YP_002218183.1 198244901 complement(4547387..4548466) 1 NC_011205.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor protein BasS/PmrB 4548466 439851004749 SeD_A4686 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sensor protein BasS/PmrB YP_002218183.1 4547387 R 439851 CDS YP_002218184.1 198245395 complement(4548467..4549135) 1 NC_011205.1 response regulator in two-component regulatory system with BasS; DNA-binding transcriptional regulator BasR 4549135 439851004750 SeD_A4687 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator BasR YP_002218184.1 4548467 R 439851 CDS YP_002218185.1 198244046 complement(4550909..4552246) 1 NC_011205.1 identified by match to protein family HMM PF00324; arginine:agmatin antiporter 4552246 439851004752 SeD_A4689 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arginine:agmatin antiporter YP_002218185.1 4550909 R 439851 CDS YP_002218186.1 198245959 complement(4552386..4553117) 1 NC_011205.1 identified by match to protein family HMM PF00165; porin 4553117 439851004753 SeD_A4690 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 porin YP_002218186.1 4552386 R 439851 CDS YP_002218187.1 198245345 complement(4553445..4555715) 1 NC_011205.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711; biodegradative arginine decarboxylase 4555715 adiA 439851004754 adiA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 biodegradative arginine decarboxylase YP_002218187.1 4553445 R 439851 CDS YP_002218188.1 198243265 complement(4555945..4556835) 1 NC_011205.1 identified by match to protein family HMM PF00165; DNA-binding transcriptional regulator MelR 4556835 439851004755 SeD_A4692 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator MelR YP_002218188.1 4555945 R 439851 CDS YP_002218189.1 198243990 4557146..4558501 1 NC_011205.1 identified by match to protein family HMM PF02056; alpha-galactosidase 4558501 439851004756 SeD_A4693 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 alpha-galactosidase YP_002218189.1 4557146 D 439851 CDS YP_002218190.1 198241954 4558585..4560015 1 NC_011205.1 identified by match to protein family HMM TIGR00792; melibiose:sodium symporter 4560015 439851004757 SeD_A4694 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 melibiose:sodium symporter YP_002218190.1 4558585 D 439851 CDS YP_002218191.1 198242592 complement(4560117..4561763) 1 NC_011205.1 identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723; fumarate hydratase class I, anaerobic 4561763 fumB 439851004758 fumB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fumarate hydratase class I, anaerobic YP_002218191.1 4560117 R 439851 CDS YP_002218192.1 198245398 complement(4561859..4563199) 1 NC_011205.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 4563199 dcuB 439851004759 dcuB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anaerobic C4-dicarboxylate transporter YP_002218192.1 4561859 R 439851 CDS YP_002218193.1 198242638 complement(4563346..4563519) 1 NC_011205.1 hypothetical protein 4563519 439851004760 SeD_A4697 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218193.1 4563346 R 439851 CDS YP_002218194.1 198244090 complement(4563929..4564648) 1 NC_011205.1 response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; DNA-binding transcriptional activator DcuR 4564648 439851004761 SeD_A4698 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional activator DcuR YP_002218194.1 4563929 R 439851 CDS YP_002218195.1 198245745 complement(4564645..4566276) 1 NC_011205.1 C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; sensory histidine kinase DcuS 4566276 439851004762 SeD_A4699 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sensory histidine kinase DcuS YP_002218195.1 4564645 R 439851 CDS YP_002218196.1 198243998 4566632..4569061 1 NC_011205.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166; anaerobic dimethyl sulfoxide reductase chain a 4569061 439851004763 SeD_A4700 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anaerobic dimethyl sulfoxide reductase chain a YP_002218196.1 4566632 D 439851 CDS YP_002218197.1 198243354 4569075..4569701 1 NC_011205.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02951; dimethylsulfoxide reductase, chain B 4569701 dmsB 439851004764 dmsB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dimethylsulfoxide reductase, chain B YP_002218197.1 4569075 D 439851 CDS YP_002218198.1 198244408 4569694..4570467 1 NC_011205.1 identified by match to protein family HMM PF04976; dmso reductase anchor subunit 4570467 dmsC 439851004765 dmsC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dmso reductase anchor subunit YP_002218198.1 4569694 D 439851 CDS YP_002218199.1 198243600 complement(4571220..4572620) 1 NC_011205.1 hypothetical protein 4572620 439851004767 SeD_A4704 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218199.1 4571220 R 439851 CDS YP_002218200.1 198241817 4572646..4572759 1 NC_011205.1 identified by glimmer; hypothetical protein 4572759 439851004768 SeD_A4705 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218200.1 4572646 D 439851 CDS YP_002218201.1 198244459 4572969..4573829 1 NC_011205.1 identified by match to protein family HMM PF06977; SdiA-regulated family protein 4573829 439851004769 SeD_A4706 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 SdiA-regulated family protein YP_002218201.1 4572969 D 439851 CDS YP_002218202.1 198245590 complement(4574123..4574311) 1 NC_011205.1 hypothetical protein 4574311 439851004770 SeD_A4707 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218202.1 4574123 R 439851 CDS YP_002218203.1 198245126 complement(4574400..4574561) 1 NC_011205.1 hypothetical protein 4574561 439851004771 SeD_A4708 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218203.1 4574400 R 439851 CDS YP_002218204.1 198245609 complement(4574638..4574910) 1 NC_011205.1 identified by match to protein family HMM PF00196; GerE family regulatory protein 4574910 439851004772 SeD_A4709 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GerE family regulatory protein YP_002218204.1 4574638 R 439851 CDS YP_002218205.1 198244964 complement(4574922..4575797) 1 NC_011205.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 4575797 439851004773 SeD_A4710 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 AraC family transcriptional regulator YP_002218205.1 4574922 R 439851 CDS YP_002218206.1 198245188 4576600..4576893 1 NC_011205.1 identified by match to protein family HMM PF08681; hypothetical protein 4576893 439851004775 SeD_A4712 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218206.1 4576600 D 439851 CDS YP_002218207.1 198245807 4576890..4577381 1 NC_011205.1 identified by match to protein family HMM PF00583; GNAT family acetyltransferase 4577381 439851004776 SeD_A4713 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GNAT family acetyltransferase YP_002218207.1 4576890 D 439851 CDS YP_002218208.1 198244199 complement(4577629..4578381) 1 NC_011205.1 identified by match to protein family HMM PF01569; acid phosphatase 4578381 439851004777 SeD_A4714 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 acid phosphatase YP_002218208.1 4577629 R 439851 CDS YP_002218209.1 198244906 complement(4578424..4578558) 1 NC_011205.1 identified by glimmer; hypothetical protein 4578558 439851004778 SeD_A4715 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218209.1 4578424 R 439851 CDS YP_002218210.1 198244706 4578780..4578923 1 NC_011205.1 hypothetical protein 4578923 439851004779 SeD_A4716 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218210.1 4578780 D 439851 CDS YP_002218211.1 198243129 complement(4579283..4579858) 1 NC_011205.1 identified by match to protein family HMM PF00440; transcriptional regulator 4579858 439851004781 SeD_A4718 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002218211.1 4579283 R 439851 CDS YP_002218212.1 198245746 complement(4579895..4581598) 1 NC_011205.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein precursor 4581598 dipZ 439851004782 dipZ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thiol:disulfide interchange protein precursor YP_002218212.1 4579895 R 439851 CDS YP_002218213.1 198244128 complement(4581574..4581921) 1 NC_011205.1 copper binding protein required for copper tolerance; involved in resistance toward heavy metals; divalent-cation tolerance protein CutA 4581921 cutA 439851004783 cutA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 divalent-cation tolerance protein CutA YP_002218213.1 4581574 R 439851 CDS YP_002218214.1 198242167 complement(4582042..4583343) 1 NC_011205.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 4583343 dcuA 439851004784 dcuA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anaerobic C4-dicarboxylate transporter YP_002218214.1 4582042 R 439851 CDS YP_002218215.1 198242868 complement(4583458..4584894) 1 NC_011205.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 4584894 aspA 439851004785 aspA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aspartate ammonia-lyase YP_002218215.1 4583458 R 439851 CDS YP_002218216.1 198245404 4585235..4585711 1 NC_011205.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA 4585711 fxsA 439851004787 fxsA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 FxsA YP_002218216.1 4585235 D 439851 CDS YP_002218217.1 198242056 complement(4585770..4587032) 1 NC_011205.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function; hypothetical protein 4587032 439851004788 SeD_A4725 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218217.1 4585770 R 439851 CDS YP_002218218.1 198243852 4587287..4587580 1 NC_011205.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4587580 groES 439851004789 groES Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 co-chaperonin GroES YP_002218218.1 4587287 D 439851 CDS YP_002218219.1 198245633 4587624..4589270 1 NC_011205.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 4589270 groEL 439851004790 groEL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 molecular chaperone GroEL YP_002218219.1 4587624 D 439851 CDS YP_002218220.1 198245154 4589514..4589867 1 NC_011205.1 lipoprotein 4589867 439851004791 SeD_A4728 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoprotein YP_002218220.1 4589514 D 439851 CDS YP_002218221.1 198242748 complement(4589915..4590772) 1 NC_011205.1 inner membrane protein 4590772 439851004792 SeD_A4729 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002218221.1 4589915 R 439851 CDS YP_002218222.1 198243525 complement(4591054..4592082) 1 NC_011205.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238; KamA family protein 4592082 439851004793 SeD_A4730 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 KamA family protein YP_002218222.1 4591054 R 439851 CDS YP_002218223.1 198242040 4592123..4592689 1 NC_011205.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 4592689 efp 439851004794 efp Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 elongation factor P YP_002218223.1 4592123 D 439851 CDS YP_002218224.1 198242539 4592708..4592884 1 NC_011205.1 identified by match to protein family HMM PF08085; entericidin A 4592884 439851004795 SeD_A4732 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 entericidin A YP_002218224.1 4592708 D 439851 CDS YP_002218225.1 198242359 4593837..4593965 1 NC_011205.1 identified by glimmer; hypothetical protein 4593965 439851004797 SeD_A4734 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218225.1 4593837 D 439851 CDS YP_002218226.1 198243377 complement(4594347..4594880) 1 NC_011205.1 lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc 4594880 439851004799 SeD_A4736 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane lipoprotein Blc YP_002218226.1 4594347 R 439851 CDS YP_002218227.1 198244908 complement(4594992..4595351) 1 NC_011205.1 in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 4595351 439851004800 SeD_A4737 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fumarate reductase subunit D YP_002218227.1 4594992 R 439851 CDS YP_002218228.1 198244839 complement(4595362..4595757) 1 NC_011205.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C 4595757 frdC 439851004801 frdC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fumarate reductase subunit C YP_002218228.1 4595362 R 439851 CDS YP_002218229.1 198245850 complement(4595768..4596502) 1 NC_011205.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 4596502 frdB 439851004802 frdB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fumarate reductase iron-sulfur subunit YP_002218229.1 4595768 R 439851 CDS YP_002218230.1 198244126 complement(4596495..4598285) 1 NC_011205.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 4598285 frdA 439851004803 frdA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fumarate reductase flavoprotein subunit YP_002218230.1 4596495 R 439851 CDS YP_002218231.1 198242311 4598608..4599585 1 NC_011205.1 lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 4599585 439851004804 SeD_A4741 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lysyl-tRNA synthetase YP_002218231.1 4598608 D 439851 CDS YP_002218232.1 198245631 4599832..4601313 1 NC_011205.1 identified by match to protein family HMM PF00324; inner membrane transporter YjeM 4601313 439851004805 SeD_A4742 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane transporter YjeM YP_002218232.1 4599832 D 439851 CDS YP_002218233.1 198242151 4601365..4601679 1 NC_011205.1 hypothetical protein 4601679 439851004806 SeD_A4743 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218233.1 4601365 D 439851 CDS YP_002218234.1 198242659 complement(4601746..4605072) 1 NC_011205.1 identified by match to protein family HMM PF00924; hypothetical protein 4605072 439851004807 SeD_A4744 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218234.1 4601746 R 439851 CDS YP_002218235.1 198243190 complement(4605091..4606059) 1 NC_011205.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 4606059 psd 439851004808 psd Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphatidylserine decarboxylase YP_002218235.1 4605091 R 439851 CDS YP_002218236.1 198243107 complement(4606151..4607203) 1 NC_011205.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 4607203 rsgA 439851004809 rsgA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribosome-associated GTPase YP_002218236.1 4606151 R 439851 CDS YP_002218237.1 198244671 4607310..4607855 1 NC_011205.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 4607855 439851004810 SeD_A4747 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 oligoribonuclease YP_002218237.1 4607310 D 439851 CDS YP_002218238.1 198246245 complement(4607917..4608657) 1 NC_011205.1 identified by match to protein family HMM PF00497; arginine-binding periplasmic protein 2 4608657 439851004811 SeD_A4748 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arginine-binding periplasmic protein 2 YP_002218238.1 4607917 R 439851 CDS YP_002218239.1 198244977 complement(4609742..4610896) 1 NC_011205.1 identified by match to protein family HMM PF08331; match to protein family HMM TIGR00276; iron-sulfur cluster binding protein 4610896 439851004815 SeD_A4753 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 iron-sulfur cluster binding protein YP_002218239.1 4609742 R 439851 CDS YP_002218240.1 198244349 4610883..4612427 1 NC_011205.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; hypothetical protein 4612427 439851004816 SeD_A4752 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218240.1 4610883 D 439851 CDS YP_002218241.1 198243704 4612402..4612860 1 NC_011205.1 possibly involved in cell wall synthesis; ATPase 4612860 439851004817 SeD_A4754 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ATPase YP_002218241.1 4612402 D 439851 CDS YP_002218242.1 198243078 4612877..4614199 1 NC_011205.1 identified by match to protein family HMM PF01520; N-acetylmuramoyl-l-alanine amidase II 4614199 439851004818 SeD_A4755 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 N-acetylmuramoyl-l-alanine amidase II YP_002218242.1 4612877 D 439851 CDS YP_002218243.1 198245330 4614209..4616065 1 NC_011205.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 4616065 mutL 439851004819 mutL Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA mismatch repair protein YP_002218243.1 4614209 D 439851 CDS YP_002218244.1 198242420 4616058..4617008 1 NC_011205.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 4617008 miaA 439851004820 miaA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA delta(2)-isopentenylpyrophosphate transferase YP_002218244.1 4616058 D 439851 CDS YP_002218245.1 198244052 4617091..4617399 1 NC_011205.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 4617399 hfq 439851004821 hfq Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RNA-binding protein Hfq YP_002218245.1 4617091 D 439851 CDS YP_002218246.1 198245642 4617471..4618751 1 NC_011205.1 involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; GTPase HflX 4618751 hflX 439851004822 hflX Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GTPase HflX YP_002218246.1 4617471 D 439851 CDS YP_002218247.1 198245726 4618966..4620225 1 NC_011205.1 with HflC inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflK 4620225 hflK 439851004823 hflK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 FtsH protease regulator HflK YP_002218247.1 4618966 D 439851 CDS YP_002218248.1 198244529 4620228..4621232 1 NC_011205.1 with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC 4621232 hflC 439851004824 hflC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 FtsH protease regulator HflC YP_002218248.1 4620228 D 439851 CDS YP_002218249.1 198241804 4621311..4621508 1 NC_011205.1 hypothetical protein 4621508 439851004825 SeD_A4762 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218249.1 4621311 D 439851 CDS YP_002218250.1 198242444 4621611..4622909 1 NC_011205.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 4622909 purA 439851004826 purA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 adenylosuccinate synthetase YP_002218250.1 4621611 D 439851 CDS YP_002218251.1 198243076 4623053..4623541 1 NC_011205.1 negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR 4623541 nsrR 439851004827 nsrR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional repressor NsrR YP_002218251.1 4623053 D 439851 CDS YP_002218252.1 198243705 4623579..4626017 1 NC_011205.1 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; exoribonuclease R 4626017 rnr 439851004828 rnr Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 exoribonuclease R YP_002218252.1 4623579 D 439851 CDS YP_002218253.1 198243348 4626108..4626839 1 NC_011205.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 4626839 439851004829 SeD_A4766 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 23S rRNA (guanosine-2'-O-)-methyltransferase YP_002218253.1 4626108 D 439851 CDS YP_002218254.1 198243800 4626972..4627376 1 NC_011205.1 hypothetical protein 4627376 439851004830 SeD_A4767 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218254.1 4626972 D 439851 CDS YP_002218255.1 198244026 4627391..4628089 1 NC_011205.1 identified by match to protein family HMM PF04012; PspA/IM30 family protein 4628089 439851004831 SeD_A4768 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PspA/IM30 family protein YP_002218255.1 4627391 D 439851 CDS YP_002218256.1 198242552 4629156..4629815 1 NC_011205.1 hypothetical protein 4629815 439851004833 SeD_A4770 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218256.1 4629156 D 439851 CDS YP_002218257.1 198245455 4629833..4630231 1 NC_011205.1 identified by match to protein family HMM PF03994; hypothetical protein 4630231 439851004834 SeD_A4771 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218257.1 4629833 D 439851 CDS YP_002218258.1 198243588 4630241..4630879 1 NC_011205.1 identified by match to protein family HMM PF06693; inner membrane protein 4630879 439851004835 SeD_A4772 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002218258.1 4630241 D 439851 CDS YP_002218259.1 198241959 4630882..4632045 1 NC_011205.1 identified by match to protein family HMM PF03738; glutathionylspermidine synthase domain-containing protein 4632045 439851004836 SeD_A4773 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glutathionylspermidine synthase domain-containing protein YP_002218259.1 4630882 D 439851 CDS YP_002218260.1 198244552 4632130..4633752 1 NC_011205.1 catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA; isovaleryl CoA dehydrogenase 4633752 439851004837 SeD_A4774 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 isovaleryl CoA dehydrogenase YP_002218260.1 4632130 D 439851 CDS YP_002218261.1 198245025 complement(4633830..4634105) 1 NC_011205.1 identified by match to protein family HMM PF07338; hypothetical protein 4634105 439851004838 SeD_A4775 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218261.1 4633830 R 439851 CDS YP_002218262.1 198244520 complement(4634236..4634538) 1 NC_011205.1 in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility; biofilm stress and motility protein A 4634538 439851004839 SeD_A4776 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 biofilm stress and motility protein A YP_002218262.1 4634236 R 439851 CDS YP_002218263.1 198245338 4634749..4635498 1 NC_011205.1 YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; esterase 4635498 439851004840 SeD_A4777 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 esterase YP_002218263.1 4634749 D 439851 CDS YP_002218264.1 198244989 complement(4635495..4636250) 1 NC_011205.1 negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR 4636250 439851004841 SeD_A4778 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional repressor UlaR YP_002218264.1 4635495 R 439851 CDS YP_002218265.1 198246118 complement(4636355..4637419) 1 NC_011205.1 L-ascorbate 6-phosphate lactonase 4637419 439851004842 SeD_A4779 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-ascorbate 6-phosphate lactonase YP_002218265.1 4636355 R 439851 CDS YP_002218266.1 198244626 4637782..4639179 1 NC_011205.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 4639179 ulaA 439851004843 ulaA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system ascorbate-specific transporter subunit IIC YP_002218266.1 4637782 D 439851 CDS YP_002218267.1 198242612 4639510..4639974 1 NC_011205.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIA 4639974 ulaC 439851004845 ulaC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system L-ascorbate-specific transporter subunit IIA YP_002218267.1 4639510 D 439851 CDS YP_002218268.1 198245941 4639988..4640638 1 NC_011205.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 4640638 ulaD 439851004846 ulaD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 3-keto-L-gulonate-6-phosphate decarboxylase YP_002218268.1 4639988 D 439851 CDS YP_002218269.1 198244201 4640648..4641502 1 NC_011205.1 UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway; L-xylulose 5-phosphate 3-epimerase 4641502 ulaE 439851004847 ulaE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-xylulose 5-phosphate 3-epimerase YP_002218269.1 4640648 D 439851 CDS YP_002218270.1 198244675 4641502..4642188 1 NC_011205.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 4642188 sgaE 439851004848 sgaE Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-ribulose-5-phosphate 4-epimerase YP_002218270.1 4641502 D 439851 CDS YP_002218271.1 198243366 complement(4642317..4642595) 1 NC_011205.1 identified by match to protein family HMM PF07338; hypothetical protein 4642595 439851004849 SeD_A4786 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218271.1 4642317 R 439851 CDS YP_002218272.1 198243986 4643062..4643457 1 NC_011205.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 4643457 rpsF 439851004850 rpsF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S6 YP_002218272.1 4643062 D 439851 CDS YP_002218273.1 198242057 4643464..4643778 1 NC_011205.1 binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 4643778 priB 439851004851 priB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 primosomal replication protein N YP_002218273.1 4643464 D 439851 CDS YP_002218274.1 198242690 4643783..4644010 1 NC_011205.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4644010 rpsR 439851004852 rpsR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 30S ribosomal protein S18 YP_002218274.1 4643783 D 439851 CDS YP_002218275.1 198243675 4644052..4644501 1 NC_011205.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4644501 rplI 439851004853 rplI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 50S ribosomal protein L9 YP_002218275.1 4644052 D 439851 CDS YP_002218276.1 198242021 4644649..4645575 1 NC_011205.1 identified by match to protein family HMM PF00892; hypothetical protein 4645575 439851004854 SeD_A4791 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218276.1 4644649 D 439851 CDS YP_002218277.1 198245894 complement(4645625..4646260) 1 NC_011205.1 identified by match to protein family HMM PF04225; match to protein family HMM PF08525; opacity-associated protein A 4646260 439851004855 SeD_A4792 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 opacity-associated protein A YP_002218277.1 4645625 R 439851 CDS YP_002218278.1 198244307 4646438..4647100 1 NC_011205.1 FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase 4647100 439851004856 SeD_A4793 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidyl-prolyl cis-trans isomerase YP_002218278.1 4646438 D 439851 CDS YP_002218279.1 198245061 4647396..4648799 1 NC_011205.1 involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 4648799 439851004857 SeD_A4794 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-alanine/D-serine/glycine permease YP_002218279.1 4647396 D 439851 CDS YP_002218280.1 198243435 4649137..4650276 1 NC_011205.1 hypothetical protein 4650276 439851004858 SeD_A4795 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218280.1 4649137 D 439851 CDS YP_002218281.1 198242963 4650291..4651679 1 NC_011205.1 hypothetical protein 4651679 439851004859 SeD_A4796 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218281.1 4650291 D 439851 CDS YP_002218282.1 198243451 complement(4651746..4652408) 1 NC_011205.1 Involved in anaerobic NO protection and iron metabolism; iron-sulfur cluster repair di-iron protein 4652408 439851004860 SeD_A4797 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 iron-sulfur cluster repair di-iron protein YP_002218282.1 4651746 R 439851 CDS YP_002218283.1 198241982 complement(4652511..4653476) 1 NC_011205.1 identified by match to protein family HMM PF00892; hypothetical protein 4653476 439851004861 SeD_A4798 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218283.1 4652511 R 439851 CDS YP_002218284.1 198242465 complement(4653557..4654405) 1 NC_011205.1 identified by match to protein family HMM PF01073; match to protein family HMM PF02254; match to protein family HMM PF05368; match to protein family HMM PF07993; hypothetical protein 4654405 439851004862 SeD_A4799 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218284.1 4653557 R 439851 CDS YP_002218285.1 198243810 complement(4654937..4656880) 1 NC_011205.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 4656880 cpdB 439851004864 cpdB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein YP_002218285.1 4654937 R 439851 CDS YP_002218286.1 198242770 4657148..4657888 1 NC_011205.1 catalyzes the formation of AMP from adenosine-3',5'-bisphosphate; adenosine-3'(2'),5'-bisphosphate nucleotidase 4657888 cysQ 439851004865 cysQ Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 adenosine-3'(2'),5'-bisphosphate nucleotidase YP_002218286.1 4657148 D 439851 CDS YP_002218287.1 198242991 complement(4657878..4658435) 1 NC_011205.1 identified by match to protein family HMM TIGR01626; hypothetical protein 4658435 439851004866 SeD_A4803 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218287.1 4657878 R 439851 CDS YP_002218288.1 198241972 4658762..4658968 1 NC_011205.1 identified by match to protein family HMM PF06526; hypothetical protein 4658968 439851004867 SeD_A4804 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218288.1 4658762 D 439851 CDS YP_002218289.1 198245725 complement(4659053..4660396) 1 NC_011205.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; transporter 4660396 439851004868 SeD_A4805 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transporter YP_002218289.1 4659053 R 439851 CDS YP_002218290.1 198244283 complement(4660579..4661217) 1 NC_011205.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 4661217 msrA 439851004869 msrA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methionine sulfoxide reductase A YP_002218290.1 4660579 R 439851 CDS YP_002218291.1 198243535 4661272..4661388 1 NC_011205.1 identified by glimmer; hypothetical protein 4661388 439851004870 SeD_A4807 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218291.1 4661272 D 439851 CDS YP_002218292.1 198243763 4661430..4663163 1 NC_011205.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244; OMP85 family outer membrane protein 4663163 439851004871 SeD_A4808 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 OMP85 family outer membrane protein YP_002218292.1 4661430 D 439851 CDS YP_002218293.1 198242537 4663160..4666939 1 NC_011205.1 identified by match to protein family HMM PF04357; hypothetical protein 4666939 439851004872 SeD_A4809 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218293.1 4663160 D 439851 CDS YP_002218294.1 198246221 4666942..4667286 1 NC_011205.1 identified by match to protein family HMM PF03674; hypothetical protein 4667286 439851004873 SeD_A4810 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218294.1 4666942 D 439851 CDS YP_002218295.1 198244716 complement(4667340..4668548) 1 NC_011205.1 identified by match to protein family HMM PF07690; sugar transporter 4668548 439851004874 SeD_A4811 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sugar transporter YP_002218295.1 4667340 R 439851 CDS YP_002218296.1 198244104 complement(4668545..4669708) 1 NC_011205.1 identified by match to protein family HMM PF01979; metallo-dependent hydrolase 4669708 439851004875 SeD_A4812 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 metallo-dependent hydrolase YP_002218296.1 4668545 R 439851 CDS YP_002218297.1 198243796 complement(4670118..4670648) 1 NC_011205.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 4670648 ppa 439851004876 ppa Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inorganic pyrophosphatase YP_002218297.1 4670118 R 439851 CDS YP_002218298.1 198243119 complement(4670875..4671873) 1 NC_011205.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 4671873 fbp 439851004877 fbp Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fructose-1,6-bisphosphatase YP_002218298.1 4670875 R 439851 CDS YP_002218299.1 198242179 4672048..4673421 1 NC_011205.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01081; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4673421 mpl 439851004879 mpl Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_002218299.1 4672048 D 439851 CDS YP_002218300.1 198245235 complement(4673528..4674079) 1 NC_011205.1 identified by match to protein family HMM PF04751; hypothetical protein 4674079 yjgA 439851004880 yjgA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218300.1 4673528 R 439851 CDS YP_002218301.1 198245735 4674187..4675527 1 NC_011205.1 protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA 4675527 pmbA 439851004881 pmbA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptidase PmbA YP_002218301.1 4674187 D 439851 CDS YP_002218302.1 198244303 4675626..4676012 1 NC_011205.1 identified by match to protein family HMM PF07361; soluBle cytochrome b562 4676012 439851004882 SeD_A4819 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 soluBle cytochrome b562 YP_002218302.1 4675626 D 439851 CDS YP_002218303.1 198244295 4676299..4676628 1 NC_011205.1 identified by match to protein family HMM PF00874; PRD domain-containing protein 4676628 439851004883 SeD_A4820 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PRD domain-containing protein YP_002218303.1 4676299 D 439851 CDS YP_002218304.1 198244970 4676639..4677001 1 NC_011205.1 transcriptional regulator 4677001 439851004884 SeD_A4821 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transcriptional regulator YP_002218304.1 4676639 D 439851 CDS YP_002218305.1 198244632 4677001..4677303 1 NC_011205.1 hypothetical protein 4677303 439851004885 SeD_A4822 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218305.1 4677001 D 439851 CDS YP_002218306.1 198243759 4677326..4678102 1 NC_011205.1 membrane protein 4678102 439851004886 SeD_A4823 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 membrane protein YP_002218306.1 4677326 D 439851 CDS YP_002218307.1 198242236 4678114..4678758 1 NC_011205.1 membrane protein 4678758 439851004887 SeD_A4824 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 membrane protein YP_002218307.1 4678114 D 439851 CDS YP_002218308.1 198242158 4678817..4679950 1 NC_011205.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 4679950 439851004888 SeD_A4825 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dihydroorotase YP_002218308.1 4678817 D 439851 CDS YP_002218309.1 198242846 4679934..4681052 1 NC_011205.1 identified by match to protein family HMM PF01212; match to protein family HMM PF03841; match to protein family HMM TIGR01437; hypothetical protein 4681052 439851004889 SeD_A4826 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218309.1 4679934 D 439851 CDS YP_002218310.1 198245133 4681049..4681789 1 NC_011205.1 identified by match to protein family HMM PF07071; 4-hydroxy-2-ketovalerate aldolase 4681789 439851004890 SeD_A4827 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 4-hydroxy-2-ketovalerate aldolase YP_002218310.1 4681049 D 439851 CDS YP_002218311.1 198245784 4681806..4683719 1 NC_011205.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279; HTH domain-containing protein 4683719 439851004891 SeD_A4828 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 HTH domain-containing protein YP_002218311.1 4681806 D 439851 CDS YP_002218312.1 198245950 4683797..4684039 1 NC_011205.1 Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 4684039 439851004892 SeD_A4829 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 bifunctional antitoxin/transcriptional repressor RelB YP_002218312.1 4683797 D 439851 CDS YP_002218313.1 198242890 4684029..4684313 1 NC_011205.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; stability protein StbE 4684313 439851004893 SeD_A4830 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 stability protein StbE YP_002218313.1 4684029 D 439851 CDS YP_002218314.1 198243572 complement(4684317..4684781) 1 NC_011205.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 4684781 nrdG 439851004894 nrdG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anaerobic ribonucleotide reductase-activating protein YP_002218314.1 4684317 R 439851 CDS YP_002218315.1 198244214 complement(4684998..4687136) 1 NC_011205.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 4687136 nrdD 439851004895 nrdD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 anaerobic ribonucleoside triphosphate reductase YP_002218315.1 4684998 R 439851 CDS YP_002218316.1 198245304 4687341..4687511 1 NC_011205.1 hypothetical protein 4687511 439851004896 SeD_A4833 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218316.1 4687341 D 439851 CDS YP_002218317.1 198245932 complement(4687545..4689197) 1 NC_011205.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403; trehalose-6-phosphate hydrolase 4689197 treC 439851004897 treC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 trehalose-6-phosphate hydrolase YP_002218317.1 4687545 R 439851 CDS YP_002218318.1 198246006 complement(4689247..4690665) 1 NC_011205.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system trehalose(maltose)-specific transporter subunits IIBC 4690665 treB 439851004898 treB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system trehalose(maltose)-specific transporter subunits IIBC YP_002218318.1 4689247 R 439851 CDS YP_002218319.1 198242111 complement(4690803..4691750) 1 NC_011205.1 regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; trehalose repressor 4691750 treR 439851004899 treR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 trehalose repressor YP_002218319.1 4690803 R 439851 CDS YP_002218320.1 198244002 4692062..4694842 1 NC_011205.1 P-type ATPase involved in magnesium influx; magnesium-transporting ATPase MgtA 4694842 mgtA 439851004901 mgtA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 magnesium-transporting ATPase MgtA YP_002218320.1 4692062 D 439851 CDS YP_002218321.1 198244057 complement(4694958..4695404) 1 NC_011205.1 transposase 4695404 439851004902 SeD_A4839 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transposase YP_002218321.1 4694958 R 439851 CDS YP_002218322.1 198244911 complement(4695479..4695865) 1 NC_011205.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 4695865 439851004903 SeD_A4840 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 endoribonuclease L-PSP YP_002218322.1 4695479 R 439851 CDS YP_002218323.1 198244301 complement(4695942..4696403) 1 NC_011205.1 involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase 4696403 pyrI 439851004904 pyrI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aspartate carbamoyltransferase YP_002218323.1 4695942 R 439851 CDS YP_002218324.1 198244967 complement(4696416..4697351) 1 NC_011205.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 4697351 pyrB 439851004905 pyrB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aspartate carbamoyltransferase YP_002218324.1 4696416 R 439851 CDS YP_002218325.1 198243680 complement(4697579..4698067) 1 NC_011205.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863; arginine repressor ArgR 4698067 439851004907 SeD_A4844 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arginine repressor ArgR YP_002218325.1 4697579 R 439851 CDS YP_002218326.1 198242413 complement(4698064..4698180) 1 NC_011205.1 identified by glimmer; hypothetical protein 4698180 439851004908 SeD_A4845 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218326.1 4698064 R 439851 CDS YP_002218327.1 198243091 complement(4698254..4699657) 1 NC_011205.1 identified by match to protein family HMM PF03606; C4-dicarboxylate anaerobic carrier 4699657 439851004909 SeD_A4846 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 C4-dicarboxylate anaerobic carrier YP_002218327.1 4698254 R 439851 CDS YP_002218328.1 198245653 complement(4699713..4700717) 1 NC_011205.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 4700717 argF 439851004910 argF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ornithine carbamoyltransferase YP_002218328.1 4699713 R 439851 CDS YP_002218329.1 198241783 complement(4700717..4700854) 1 NC_011205.1 hypothetical protein 4700854 439851004911 SeD_A4848 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218329.1 4700717 R 439851 CDS YP_002218330.1 198244974 complement(4700829..4701761) 1 NC_011205.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 4701761 arcC 439851004912 arcC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 carbamate kinase YP_002218330.1 4700829 R 439851 CDS YP_002218331.1 198242990 complement(4701772..4702992) 1 NC_011205.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 4702992 arcA 439851004913 arcA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 arginine deiminase YP_002218331.1 4701772 R 439851 CDS YP_002218332.1 198242719 4703093..4703284 1 NC_011205.1 hypothetical protein 4703284 439851004914 SeD_A4851 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218332.1 4703093 D 439851 CDS YP_002218333.1 198242032 4703668..4704120 1 NC_011205.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022; hypothetical protein 4704120 439851004915 SeD_A4852 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218333.1 4703668 D 439851 CDS YP_002218334.1 198244001 complement(4704194..4705198) 1 NC_011205.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.; ornithine carbamoyltransferase subunit I 4705198 argF 439851004916 argF Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ornithine carbamoyltransferase subunit I YP_002218334.1 4704194 R 439851 CDS YP_002218335.1 198243331 4705364..4705780 1 NC_011205.1 identified by match to protein family HMM PF06877; hypothetical protein 4705780 439851004917 SeD_A4854 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218335.1 4705364 D 439851 CDS YP_002218336.1 198244684 4705792..4706604 1 NC_011205.1 identified by match to protein family HMM PF06175; tRNA-(ms[2]io[6]A)-hydroxylase 4706604 439851004918 SeD_A4855 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tRNA-(ms[2]io[6]A)-hydroxylase YP_002218336.1 4705792 D 439851 CDS YP_002218337.1 198245460 complement(4706838..4707326) 1 NC_011205.1 hypothetical protein 4707326 439851004920 SeD_A4857 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218337.1 4706838 R 439851 CDS YP_002218338.1 198245409 complement(4707433..4707936) 1 NC_011205.1 identified by match to protein family HMM PF00583; GNAT family acetyltransferase 4707936 439851004921 SeD_A4858 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GNAT family acetyltransferase YP_002218338.1 4707433 R 439851 CDS YP_002218339.1 198246120 complement(4709459..4712314) 1 NC_011205.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 4712314 valS 439851004923 valS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 valyl-tRNA synthetase YP_002218339.1 4709459 R 439851 CDS YP_002218340.1 198245468 complement(4712314..4712796) 1 NC_011205.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 4712796 holC 439851004924 holC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA polymerase III subunit chi YP_002218340.1 4712314 R 439851 CDS YP_002218341.1 198245321 complement(4712894..4714405) 1 NC_011205.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 4714405 pepA 439851004925 pepA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 leucyl aminopeptidase YP_002218341.1 4712894 R 439851 CDS YP_002218342.1 198242439 4714800..4715900 1 NC_011205.1 identified by match to protein family HMM PF03739; permease 4715900 439851004926 SeD_A4864 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 permease YP_002218342.1 4714800 D 439851 CDS YP_002218343.1 198242808 4715900..4716982 1 NC_011205.1 identified by match to protein family HMM PF03739; hypothetical protein 4716982 439851004927 SeD_A4865 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218343.1 4715900 D 439851 CDS YP_002218344.1 198242162 complement(4717177..4718175) 1 NC_011205.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; HTH-type transcriptional regulator IdnR 4718175 439851004928 SeD_A4866 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 HTH-type transcriptional regulator IdnR YP_002218344.1 4717177 R 439851 CDS YP_002218345.1 198243878 complement(4718239..4719630) 1 NC_011205.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00791; gluconate:H+ symporter family protein 4719630 439851004929 SeD_A4867 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gluconate:H+ symporter family protein YP_002218345.1 4718239 R 439851 CDS YP_002218346.1 198243240 complement(4719620..4720384) 1 NC_011205.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 4720384 439851004930 SeD_A4868 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 gluconate 5-dehydrogenase YP_002218346.1 4719620 R 439851 CDS YP_002218347.1 198244346 complement(4720409..4721440) 1 NC_011205.1 NAD-binding; L-idonate 5-dehydrogenase 4721440 439851004931 SeD_A4869 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 L-idonate 5-dehydrogenase YP_002218347.1 4720409 R 439851 CDS YP_002218348.1 198242578 4721657..4722187 1 NC_011205.1 identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313; D-gluconate kinase 4722187 idnK 439851004932 idnK Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 D-gluconate kinase YP_002218348.1 4721657 D 439851 CDS YP_002218349.1 198242573 complement(4722215..4723234) 1 NC_011205.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; hypothetical protein 4723234 439851004933 SeD_A4871 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218349.1 4722215 R 439851 CDS YP_002218350.1 198246132 4724613..4724861 1 NC_011205.1 identified by match to protein family HMM PF01402; AraC family transcriptional regulator 4724861 439851004936 SeD_A4874 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 AraC family transcriptional regulator YP_002218350.1 4724613 D 439851 CDS YP_002218351.1 198244489 4724970..4725209 1 NC_011205.1 identified by match to protein family HMM PF07362; hypothetical protein 4725209 439851004937 SeD_A4875 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218351.1 4724970 D 439851 CDS YP_002218352.1 198244481 4725212..4725520 1 NC_011205.1 identified by match to protein family HMM PF01845; cytotoxic protein CcdB 4725520 439851004938 SeD_A4876 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 cytotoxic protein CcdB YP_002218352.1 4725212 D 439851 CDS YP_003495235.1 291084515 4727548..4728084 1 NC_011205.1 fimbrial protein 4728084 439851004941 SeD_A5014 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial protein YP_003495235.1 4727548 D 439851 CDS YP_002218354.1 198241948 4727864..4727998 1 NC_011205.1 identified by glimmer; hypothetical protein 4727998 439851004942 SeD_A4880 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218354.1 4727864 D 439851 CDS YP_002218355.2 291084514 4728206..4728946 1 NC_011205.1 identified by match to protein family HMM PF02753; chaperone protein SefB 4728946 439851004943 SeD_A4881 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chaperone protein SefB YP_002218355.2 4728206 D 439851 CDS YP_002218356.1 198243755 4728963..4731407 1 NC_011205.1 identified by match to protein family HMM PF00577; outer membrane fimbrial usher protein 4731407 439851004944 SeD_A4882 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane fimbrial usher protein YP_002218356.1 4728963 D 439851 CDS YP_003495236.1 291084516 4731398..4731850 1 NC_011205.1 fimbrial adhesin subunit 4731850 439851004945 SeD_A5016 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial adhesin subunit YP_003495236.1 4731398 D 439851 CDS YP_002218358.1 198244169 complement(4731884..4732699) 1 NC_011205.1 identified by match to protein family HMM PF00165; hypothetical protein 4732699 439851004946 SeD_A4884 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218358.1 4731884 R 439851 CDS YP_002218359.1 198245912 4733276..4733485 1 NC_011205.1 identified by match to protein family HMM PF04703; hypothetical protein 4733485 439851004947 SeD_A4885 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218359.1 4733276 D 439851 CDS YP_002218360.1 198245166 4733470..4733820 1 NC_011205.1 identified by match to protein family HMM PF00196; GerE family regulatory protein 4733820 439851004948 SeD_A4886 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GerE family regulatory protein YP_002218360.1 4733470 D 439851 CDS YP_002218361.1 198242435 4733799..4733942 1 NC_011205.1 identified by glimmer; hypothetical protein 4733942 439851004949 SeD_A4887 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218361.1 4733799 D 439851 CDS YP_002218362.1 198242184 4734065..4734718 1 NC_011205.1 identified by match to protein family HMM PF01323; hypothetical protein 4734718 439851004950 SeD_A4888 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218362.1 4734065 D 439851 CDS YP_002218363.1 198243731 4734708..4734854 1 NC_011205.1 identified by glimmer; hypothetical protein 4734854 439851004951 SeD_A4889 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218363.1 4734708 D 439851 CDS YP_002218364.1 198243971 complement(4734835..4734951) 1 NC_011205.1 identified by glimmer; hypothetical protein 4734951 439851004952 SeD_A4890 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218364.1 4734835 R 439851 CDS YP_002218365.1 198244040 4736014..4736292 1 NC_011205.1 identified by match to protein family HMM PF01527; transposase family protein 4736292 439851004954 SeD_A4892 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transposase family protein YP_002218365.1 4736014 D 439851 CDS YP_002218366.1 198243697 complement(4738735..4739439) 1 NC_011205.1 identified by match to protein family HMM PF01709; hypothetical protein 4739439 439851004959 SeD_A4897 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218366.1 4738735 R 439851 CDS YP_002218367.1 198243428 4739537..4739668 1 NC_011205.1 identified by glimmer; hypothetical protein 4739668 439851004960 SeD_A4898 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218367.1 4739537 D 439851 CDS YP_002218368.1 198244990 complement(4739999..4741624) 1 NC_011205.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; SAM-dependent methyltransferase 4741624 439851004961 SeD_A4899 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 SAM-dependent methyltransferase YP_002218368.1 4739999 R 439851 CDS YP_002218369.1 198243161 complement(4741635..4741892) 1 NC_011205.1 hypothetical protein 4741892 439851004962 SeD_A4900 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218369.1 4741635 R 439851 CDS YP_002218370.1 198241926 complement(4742197..4742325) 1 NC_011205.1 identified by glimmer; hypothetical protein 4742325 439851004963 SeD_A4901 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218370.1 4742197 R 439851 CDS YP_002218371.1 198246079 4742379..4742987 1 NC_011205.1 identified by match to protein family HMM PF06353; hypothetical protein 4742987 439851004964 SeD_A4902 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218371.1 4742379 D 439851 CDS YP_002218372.1 198245438 4743341..4744252 1 NC_011205.1 hypothetical protein 4744252 439851004965 SeD_A4903 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218372.1 4743341 D 439851 CDS YP_002218373.1 198245075 4744255..4744368 1 NC_011205.1 identified by glimmer; hypothetical protein 4744368 439851004966 SeD_A4904 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218373.1 4744255 D 439851 CDS YP_002218374.1 198244669 4744429..4744557 1 NC_011205.1 identified by glimmer; hypothetical protein 4744557 439851004967 SeD_A4905 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218374.1 4744429 D 439851 CDS YP_002218375.1 198243767 4744550..4744918 1 NC_011205.1 identified by match to protein family HMM PF03625; hypothetical protein 4744918 439851004968 SeD_A4906 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218375.1 4744550 D 439851 CDS YP_002218376.1 198244816 complement(4744915..4745589) 1 NC_011205.1 identified by match to protein family HMM PF01738; dienelactone hydrolase 4745589 439851004969 SeD_A4907 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 dienelactone hydrolase YP_002218376.1 4744915 R 439851 CDS YP_002218377.1 198242237 4745939..4746712 1 NC_011205.1 regulates the expression of uxuBA; DNA-binding transcriptional repressor UxuR 4746712 439851004970 SeD_A4908 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional repressor UxuR YP_002218377.1 4745939 D 439851 CDS YP_002218378.1 198242791 complement(4746713..4747726) 1 NC_011205.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II 4747726 trpS 439851004971 trpS Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tryptophanyl-tRNA synthetase II YP_002218378.1 4746713 R 439851 CDS YP_002218379.1 198245211 4748023..4748175 1 NC_011205.1 hypothetical protein 4748175 439851004972 SeD_A4910 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218379.1 4748023 D 439851 CDS YP_002218380.1 198245869 4748528..4748974 1 NC_011205.1 identified by match to protein family HMM PF05638; hypothetical protein 4748974 439851004973 SeD_A4911 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218380.1 4748528 D 439851 CDS YP_002218381.1 198245352 complement(4749078..4749221) 1 NC_011205.1 identified by glimmer; hypothetical protein 4749221 439851004974 SeD_A4913 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218381.1 4749078 R 439851 CDS YP_002218382.1 198244578 4749213..4749947 1 NC_011205.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035; aspartate racemase 4749947 439851004975 SeD_A4912 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aspartate racemase YP_002218382.1 4749213 D 439851 CDS YP_002218383.1 198244100 complement(4749953..4750861) 1 NC_011205.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; DNA-binding transcriptional regulator 4750861 439851004976 SeD_A4914 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional regulator YP_002218383.1 4749953 R 439851 CDS YP_002218384.1 198243912 complement(4750980..4752152) 1 NC_011205.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01975; isoaspartyl dipeptidase 4752152 iadA 439851004977 iadA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 isoaspartyl dipeptidase YP_002218384.1 4750980 R 439851 CDS YP_002218385.1 198245923 complement(4752165..4752626) 1 NC_011205.1 identified by match to protein family HMM PF07670; hypothetical protein 4752626 439851004978 SeD_A4916 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218385.1 4752165 R 439851 CDS YP_002218386.1 198245294 complement(4752623..4753294) 1 NC_011205.1 identified by match to protein family HMM PF07670; transporter gate domain-containing protein 4753294 439851004979 SeD_A4917 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transporter gate domain-containing protein YP_002218386.1 4752623 R 439851 CDS YP_002218387.1 198244661 complement(4754167..4755351) 1 NC_011205.1 identified by match to protein family HMM PF06779; match to protein family HMM PF07690; major facilitator family transporter 4755351 439851004980 SeD_A4918 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 major facilitator family transporter YP_002218387.1 4754167 R 439851 CDS YP_002218388.1 198244698 complement(4755571..4756842) 1 NC_011205.1 identified by match to protein family HMM PF04286; inner membrane protein 4756842 439851004981 SeD_A4919 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002218388.1 4755571 R 439851 CDS YP_002218389.1 198244192 complement(4756929..4758170) 1 NC_011205.1 identified by match to protein family HMM PF07690; multidrug resistance protein MdtM 4758170 439851004982 SeD_A4920 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 multidrug resistance protein MdtM YP_002218389.1 4756929 R 439851 CDS YP_002218390.1 198242238 complement(4758227..4758370) 1 NC_011205.1 identified by glimmer; hypothetical protein 4758370 439851004983 SeD_A4921 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218390.1 4758227 R 439851 CDS YP_002218391.1 198245632 4758440..4758577 1 NC_011205.1 identified by glimmer; hypothetical protein 4758577 439851004984 SeD_A4922 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218391.1 4758440 D 439851 CDS YP_002218392.1 198243532 complement(4759598..4759711) 1 NC_011205.1 identified by glimmer; hypothetical protein 4759711 439851004987 SeD_A4925 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218392.1 4759598 R 439851 CDS YP_002218393.1 198242417 4759782..4761152 1 NC_011205.1 identified by match to protein family HMM PF00171; aldehyde dehydrogenase 4761152 439851004988 SeD_A4926 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 aldehyde dehydrogenase YP_002218393.1 4759782 D 439851 CDS YP_002218394.1 198241925 4761357..4761521 1 NC_011205.1 identified by match to protein family HMM PF06568; hypothetical protein 4761521 439851004989 SeD_A4927 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218394.1 4761357 D 439851 CDS YP_002218395.1 198245935 complement(4761598..4762518) 1 NC_011205.1 transporter 4762518 439851004990 SeD_A4928 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 transporter YP_002218395.1 4761598 R 439851 CDS YP_002218396.1 198245499 complement(4762682..4765948) 1 NC_011205.1 identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; hypothetical protein 4765948 439851004991 SeD_A4929 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218396.1 4762682 R 439851 CDS YP_002218397.1 198242593 complement(4767337..4768956) 1 NC_011205.1 identified by match to protein family HMM PF02384; type I restriction-modification system, M subunit 4768956 439851004993 SeD_A4931 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type I restriction-modification system, M subunit YP_002218397.1 4767337 R 439851 CDS YP_002218398.1 198243966 complement(4769746..4770084) 1 NC_011205.1 identified by glimmer; hypothetical protein 4770084 439851004996 SeD_A4934 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218398.1 4769746 R 439851 CDS YP_002218399.1 198242176 4770311..4770445 1 NC_011205.1 identified by glimmer; hypothetical protein 4770445 439851004997 SeD_A4935 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218399.1 4770311 D 439851 CDS YP_002218400.1 198245448 complement(4771734..4772075) 1 NC_011205.1 type I restriction-modification system specificity subunit 4772075 439851004999 SeD_A4937 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 type I restriction-modification system specificity subunit YP_002218400.1 4771734 R 439851 CDS YP_002218401.1 198244016 complement(4772922..4774763) 1 NC_011205.1 DNA helicase II 4774763 439851005000 SeD_A4939 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA helicase II YP_002218401.1 4772922 R 439851 CDS YP_002218402.1 198244771 4774757..4774870 1 NC_011205.1 identified by glimmer; hypothetical protein 4774870 439851005001 SeD_A4938 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218402.1 4774757 D 439851 CDS YP_002218403.1 198244139 4775006..4775122 1 NC_011205.1 identified by glimmer; hypothetical protein 4775122 439851005002 SeD_A4940 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218403.1 4775006 D 439851 CDS YP_002218404.1 198243008 4775173..4775460 1 NC_011205.1 identified by match to protein family HMM PF04365; hypothetical protein 4775460 439851005003 SeD_A4941 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218404.1 4775173 D 439851 CDS YP_002218405.1 198242082 4775447..4775749 1 NC_011205.1 hypothetical protein 4775749 439851005004 SeD_A4942 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218405.1 4775447 D 439851 CDS YP_002218406.1 198242016 complement(4775824..4776780) 1 NC_011205.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683; GTP-binding protein YjiA 4776780 439851005005 SeD_A4943 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 GTP-binding protein YjiA YP_002218406.1 4775824 R 439851 CDS YP_002218407.1 198245587 complement(4776791..4776994) 1 NC_011205.1 identified by match to protein family HMM PF04328; hypothetical protein 4776994 439851005006 SeD_A4944 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218407.1 4776791 R 439851 CDS YP_002218408.1 198242675 complement(4777089..4779239) 1 NC_011205.1 identified by match to protein family HMM PF02554; carbon starvation family protein 4779239 439851005007 SeD_A4945 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 carbon starvation family protein YP_002218408.1 4777089 R 439851 CDS YP_002218409.1 198244112 4779606..4781267 1 NC_011205.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; methyl-accepting chemotaxis protein I 4781267 439851005008 SeD_A4946 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 methyl-accepting chemotaxis protein I YP_002218409.1 4779606 D 439851 CDS YP_002218410.1 198246220 complement(4781379..4781528) 1 NC_011205.1 hypothetical protein 4781528 439851005009 SeD_A4947 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218410.1 4781379 R 439851 CDS YP_002218411.1 198243082 4781590..4784355 1 NC_011205.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00874; sigma-54 interaction domain-containing protein 4784355 439851005010 SeD_A4948 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sigma-54 interaction domain-containing protein YP_002218411.1 4781590 D 439851 CDS YP_002218412.1 198244640 4784457..4784879 1 NC_011205.1 identified by match to protein family HMM PF03610; PTS system fructose subfamily transporter subunit IIA 4784879 439851005011 SeD_A4949 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system fructose subfamily transporter subunit IIA YP_002218412.1 4784457 D 439851 CDS YP_002218413.1 198243792 4784894..4785355 1 NC_011205.1 identified by match to protein family HMM PF03830; PTS system transporter subunit IIB 4785355 439851005012 SeD_A4950 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system transporter subunit IIB YP_002218413.1 4784894 D 439851 CDS YP_002218414.1 198244593 4785381..4786160 1 NC_011205.1 identified by match to protein family HMM PF03609; PTS system transporter subunit IIC 4786160 439851005013 SeD_A4951 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 PTS system transporter subunit IIC YP_002218414.1 4785381 D 439851 CDS YP_002218415.1 198242727 4786138..4786986 1 NC_011205.1 identified by match to protein family HMM PF03613; fructose permease iid component 4786986 439851005014 SeD_A4952 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fructose permease iid component YP_002218415.1 4786138 D 439851 CDS YP_002218416.1 198242169 4786999..4788057 1 NC_011205.1 identified by match to protein family HMM PF01380; glucosamine--fructose-6-phosphate aminotransferase (isomerizing) 4788057 439851005015 SeD_A4953 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) YP_002218416.1 4786999 D 439851 CDS YP_002218417.1 198245357 4788075..4789085 1 NC_011205.1 identified by match to protein family HMM PF01380; glucosamine--fructose-6-phosphate aminotransferase (isomerizing) 4789085 439851005016 SeD_A4954 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) YP_002218417.1 4788075 D 439851 CDS YP_002218418.1 198242649 complement(4789219..4791510) 1 NC_011205.1 catalyzes the transfer of phosphoglycerol to the glucan backbone; phosphoglycerol transferase I 4791510 439851005017 SeD_A4955 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoglycerol transferase I YP_002218418.1 4789219 R 439851 CDS YP_002218419.1 198244117 complement(4791793..4792254) 1 NC_011205.1 hypothetical protein 4792254 439851005018 SeD_A4956 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218419.1 4791793 R 439851 CDS YP_002218420.1 198245840 complement(4792312..4793049) 1 NC_011205.1 acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 4793049 439851005019 SeD_A4957 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA replication protein DnaC YP_002218420.1 4792312 R 439851 CDS YP_002218421.1 198244595 complement(4793052..4793591) 1 NC_011205.1 This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'; primosomal protein DnaI 4793591 439851005020 SeD_A4958 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 primosomal protein DnaI YP_002218421.1 4793052 R 439851 CDS YP_002218422.1 198244088 complement(4793684..4794157) 1 NC_011205.1 hypothetical protein 4794157 439851005021 SeD_A4959 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218422.1 4793684 R 439851 CDS YP_002218423.1 198242132 complement(4794148..4795092) 1 NC_011205.1 identified by match to protein family HMM PF06738; hypothetical protein 4795092 439851005022 SeD_A4960 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218423.1 4794148 R 439851 CDS YP_002218424.1 198241788 complement(4795106..4795261) 1 NC_011205.1 hypothetical protein 4795261 439851005023 SeD_A4961 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218424.1 4795106 R 439851 CDS YP_002218425.1 198242398 4796323..4796997 1 NC_011205.1 regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin; DNA-binding transcriptional activator BglJ 4796997 439851005024 SeD_A4962 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding transcriptional activator BglJ YP_002218425.1 4796323 D 439851 CDS YP_002218426.1 198243057 complement(4797048..4797506) 1 NC_011205.1 identified by match to protein family HMM PF04073; prolyl-tRNA synthetase 4797506 439851005025 SeD_A4963 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 prolyl-tRNA synthetase YP_002218426.1 4797048 R 439851 CDS YP_002218427.1 198243698 complement(4797665..4798453) 1 NC_011205.1 identified by match to protein family HMM PF06276; ferric iron reductase involved in ferric hydroximate transport 4798453 439851005026 SeD_A4964 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ferric iron reductase involved in ferric hydroximate transport YP_002218427.1 4797665 R 439851 CDS YP_002218428.1 198245322 complement(4798574..4799500) 1 NC_011205.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 4799500 439851005027 SeD_A4965 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 diguanylate cyclase YP_002218428.1 4798574 R 439851 CDS YP_002218429.1 198245976 4799889..4800125 1 NC_011205.1 identified by match to protein family HMM PF07256; tryptophan-specific transport protein 4800125 439851005028 SeD_A4966 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 tryptophan-specific transport protein YP_002218429.1 4799889 D 439851 CDS YP_002218430.1 198242075 complement(4800666..4801694) 1 NC_011205.1 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase 4801694 rsmC 439851005032 rsmC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 16S ribosomal RNA m2G1207 methyltransferase YP_002218430.1 4800666 R 439851 CDS YP_002218431.1 198242723 4801797..4802234 1 NC_011205.1 with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 4802234 holD 439851005033 holD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA polymerase III subunit psi YP_002218431.1 4801797 D 439851 CDS YP_002218432.1 198243346 4802329..4802625 1 NC_011205.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 4802625 rimI 439851005034 rimI Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ribosomal-protein-alanine acetyltransferase YP_002218432.1 4802329 D 439851 CDS YP_002218433.1 198242931 4802647..4803324 1 NC_011205.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 4803324 yjjG 439851005035 yjjG Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nucleotidase YP_002218433.1 4802647 D 439851 CDS YP_002218434.1 198243278 4803416..4805005 1 NC_011205.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4805005 prfC 439851005036 prfC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 peptide chain release factor 3 YP_002218434.1 4803416 D 439851 CDS YP_002218435.1 198244263 4805197..4805331 1 NC_011205.1 identified by glimmer; hypothetical protein 4805331 439851005037 SeD_A4975 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218435.1 4805197 D 439851 CDS YP_002218436.1 198244719 4805407..4806024 1 NC_011205.1 identified by match to protein family HMM PF04972; periplasmic protein 4806024 osmY 439851005038 osmY Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 periplasmic protein YP_002218436.1 4805407 D 439851 CDS YP_002218437.1 198245205 4806153..4806314 1 NC_011205.1 identified by match to protein family HMM PF07043; hypothetical protein 4806314 439851005039 SeD_A4977 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218437.1 4806153 D 439851 CDS YP_002218438.1 198245690 4806417..4807511 1 NC_011205.1 identified by match to protein family HMM PF01734; patatin 4807511 439851005040 SeD_A4978 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 patatin YP_002218438.1 4806417 D 439851 CDS YP_002218439.1 198242234 4807508..4808281 1 NC_011205.1 identified by match to protein family HMM PF01026; deoxyribonuclease YjjV 4808281 439851005041 SeD_A4979 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 deoxyribonuclease YjjV YP_002218439.1 4807508 D 439851 CDS YP_002218440.1 198242737 complement(4808314..4809177) 1 NC_011205.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; pyruvate formate lyase activating enzyme 4809177 439851005042 SeD_A4980 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pyruvate formate lyase activating enzyme YP_002218440.1 4808314 R 439851 CDS YP_002218441.1 198243246 complement(4809149..4810699) 1 NC_011205.1 hypothetical protein 4810699 439851005043 SeD_A4981 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218441.1 4809149 R 439851 CDS YP_002218442.1 198242743 4810959..4811738 1 NC_011205.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 4811738 deoC 439851005044 deoC Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 deoxyribose-phosphate aldolase YP_002218442.1 4810959 D 439851 CDS YP_002218443.1 198242938 4811862..4813184 1 NC_011205.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 4813184 deoA 439851005045 deoA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 thymidine phosphorylase YP_002218443.1 4811862 D 439851 CDS YP_002218444.1 198241842 4813236..4814459 1 NC_011205.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 4814459 deoB 439851005046 deoB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphopentomutase YP_002218444.1 4813236 D 439851 CDS YP_002218445.1 198245838 4814669..4815388 1 NC_011205.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 4815388 deoD 439851005047 deoD Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 purine nucleoside phosphorylase YP_002218445.1 4814669 D 439851 CDS YP_002218446.1 198246166 4815936..4816895 1 NC_011205.1 identified by match to protein family HMM PF07804; match to protein family HMM PF07805; hypothetical protein 4816895 439851005048 SeD_A4986 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218446.1 4815936 D 439851 CDS YP_002218447.1 198245677 complement(4816900..4817916) 1 NC_011205.1 Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins; lipoate-protein ligase A 4817916 lplA 439851005049 lplA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lipoate-protein ligase A YP_002218447.1 4816900 R 439851 CDS YP_002218448.1 198244326 complement(4817950..4818594) 1 NC_011205.1 hypothetical protein 4818594 439851005050 SeD_A4989 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218448.1 4817950 R 439851 CDS YP_002218449.1 198243052 4818711..4819679 1 NC_011205.1 catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 4819679 serB 439851005052 serB Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoserine phosphatase YP_002218449.1 4818711 D 439851 CDS YP_002218450.1 198242633 4819763..4821145 1 NC_011205.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 4821145 radA 439851005053 radA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA repair protein RadA YP_002218450.1 4819763 D 439851 CDS YP_002218451.1 198245982 4821296..4822528 1 NC_011205.1 catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase 4822528 439851005054 SeD_A4992 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 nicotinamide-nucleotide adenylyltransferase YP_002218451.1 4821296 D 439851 CDS YP_002218452.1 198244231 complement(4822646..4824313) 1 NC_011205.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 4824313 439851005055 SeD_A4993 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 ABC transporter ATP-binding protein YP_002218452.1 4822646 R 439851 CDS YP_002218453.1 198242611 4824522..4826459 1 NC_011205.1 catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; lytic murein transglycosylase 4826459 439851005056 SeD_A4994 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 lytic murein transglycosylase YP_002218453.1 4824522 D 439851 CDS YP_002218454.1 198242109 4826517..4826843 1 NC_011205.1 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 4826843 trpR 439851005057 trpR Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 Trp operon repressor YP_002218454.1 4826517 D 439851 CDS YP_002218455.1 198241896 complement(4826945..4827460) 1 NC_011205.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 4827460 439851005058 SeD_A4996 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NTPase YP_002218455.1 4826945 R 439851 CDS YP_002218456.1 198242898 4827509..4828156 1 NC_011205.1 catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; phosphoglycerate mutase 4828156 439851005059 SeD_A4997 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 phosphoglycerate mutase YP_002218456.1 4827509 D 439851 CDS YP_002218457.1 198245731 complement(4828153..4829022) 1 NC_011205.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445; right origin-binding protein 4829022 rob 439851005060 rob Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 right origin-binding protein YP_002218457.1 4828153 R 439851 CDS YP_002218458.1 198242532 4829219..4829707 1 NC_011205.1 identified by match to protein family HMM PF05981; hypothetical protein 4829707 439851005061 SeD_A4999 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218458.1 4829219 D 439851 CDS YP_002218459.1 198241940 4829720..4830409 1 NC_011205.1 response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 4830409 439851005062 SeD_A5000 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 DNA-binding response regulator CreB YP_002218459.1 4829720 D 439851 CDS YP_002218460.1 198245862 4830409..4831833 1 NC_011205.1 part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 4831833 439851005063 SeD_A5001 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 sensory histidine kinase CreC YP_002218460.1 4830409 D 439851 CDS YP_002218461.1 198244198 complement(4833287..4834372) 1 NC_011205.1 identified by match to protein family HMM PF00419; major fimbrial subunit 4834372 439851005065 SeD_A5004 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 major fimbrial subunit YP_002218461.1 4833287 R 439851 CDS YP_002218462.1 198243552 complement(4834413..4834970) 1 NC_011205.1 identified by match to protein family HMM PF00419; fimbrial subunit 4834970 439851005066 SeD_A5005 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial subunit YP_002218462.1 4834413 R 439851 CDS YP_002218463.1 198243754 complement(4834988..4837417) 1 NC_011205.1 identified by match to protein family HMM PF00577; outer membrane usher protein SfmD 4837417 439851005067 SeD_A5006 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 outer membrane usher protein SfmD YP_002218463.1 4834988 R 439851 CDS YP_002218464.1 198242581 complement(4837571..4838254) 1 NC_011205.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753; pili assembly chaperone 4838254 439851005068 SeD_A5007 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 pili assembly chaperone YP_002218464.1 4837571 R 439851 CDS YP_002218465.1 198243347 complement(4838325..4838870) 1 NC_011205.1 identified by match to protein family HMM PF00419; fimbrial chaperone 4838870 439851005069 SeD_A5008 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 fimbrial chaperone YP_002218465.1 4838325 R 439851 CDS YP_002218466.1 198242836 complement(4839209..4839880) 1 NC_011205.1 inner membrane protein 4839880 439851005070 SeD_A5009 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 inner membrane protein YP_002218466.1 4839209 R 439851 CDS YP_002218467.1 198242007 4840021..4840140 1 NC_011205.1 identified by glimmer; hypothetical protein 4840140 439851005071 SeD_A5010 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 hypothetical protein YP_002218467.1 4840021 D 439851 CDS YP_002218468.1 198245517 complement(4840846..4841562) 1 NC_011205.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component response regulator 4841562 arcA 439851005073 arcA Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 two-component response regulator YP_002218468.1 4840846 R 439851 CDS YP_002218469.1 198244887 4842198..4842884 1 NC_011205.1 member of the SPOUT superfamily of methyltransferases; RNA methyltransferase 4842884 439851005074 SeD_A5013 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RNA methyltransferase YP_002218469.1 4842198 D 439851 CDS