-- dump date 20140620_054943 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 chrom_position -- field 4 chromosome -- field 5 codon_start -- field 6 contig -- field 7 description -- field 8 end_pos -- field 9 gene -- field 10 gene_id -- field 11 name -- field 12 organism -- field 13 product -- field 14 protein_id -- field 15 start_pos -- field 16 strand -- field 17 taxid -- field 18 type -- header -- id GI chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_005235533.1 378448041 94..378 1 NC_016855.1 putative cytoplasmic protein 378 588858000001 STM14_5526 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235533.1 94 D 588858 CDS YP_005235534.1 378448042 1333..1599 1 NC_016855.1 DNA replication 1599 repC 588858000003 repC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA replication YP_005235534.1 1333 D 588858 CDS YP_005235535.1 378448043 1722..1844 1 NC_016855.1 DNA replication 1844 repA3 588858000004 repA3 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA replication YP_005235535.1 1722 D 588858 CDS YP_005235536.1 378448044 1849..1926 1 NC_016855.1 replication of plasmid 1926 tap 588858000005 tap Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S replication of plasmid YP_005235536.1 1849 D 588858 CDS YP_005235537.1 378448045 1907..2788 1 NC_016855.1 DNA replication 2788 repA 588858000006 repA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA replication YP_005235537.1 1907 D 588858 CDS YP_005235538.1 378448046 3729..3869 1 NC_016855.1 putative outer membrane protein 3869 588858000007 STM14_5532 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005235538.1 3729 D 588858 CDS YP_005235539.1 378448047 complement(3966..4724) 1 NC_016855.1 sdiA-regulated protein; putative bacterial regulatory helix-turn-helix protein, araC family 4724 srgC 588858000008 srgC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative bacterial regulatory helix-turn-helix protein, araC family YP_005235539.1 3966 R 588858 CDS YP_005235540.1 378448048 complement(4991..5548) 1 NC_016855.1 resistance to complement killing 5548 rcK 588858000009 rcK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S resistance to complement killing YP_005235540.1 4991 R 588858 CDS YP_005235541.1 378448049 complement(5638..6537) 1 NC_016855.1 sdiA-regulated protein; putative outer membrane protein 6537 srgB 588858000010 srgB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005235541.1 5638 R 588858 CDS YP_005235542.1 378448050 complement(6670..7323) 1 NC_016855.1 sdiA-regulated protein; putative thiol-disulfide isomerase or thioredoxin 7323 srgA 588858000011 srgA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative thiol-disulfide isomerase or thioredoxin YP_005235542.1 6670 R 588858 CDS YP_005235543.1 378448051 complement(7568..7918) 1 NC_016855.1 putative bacterial regulatory protein, luxR family 7918 orf7 588858000012 orf7 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative bacterial regulatory protein, luxR family YP_005235543.1 7568 R 588858 CDS YP_005235544.1 378448052 complement(7903..8115) 1 NC_016855.1 plasmid-encoded fimbriae; regulatory 8115 pefI 588858000013 pefI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S plasmid-encoded fimbriae; regulatory YP_005235544.1 7903 R 588858 CDS YP_005235545.1 378448053 complement(8547..9422) 1 NC_016855.1 putative outer membrane protein 9422 orf6 588858000014 orf6 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005235545.1 8547 R 588858 CDS YP_005235546.1 378448054 complement(9675..10232) 1 NC_016855.1 putative outer membrane protein 10232 orf5 588858000015 orf5 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005235546.1 9675 R 588858 CDS YP_005235547.1 378448055 complement(10247..10939) 1 NC_016855.1 plasmid-encoded fimbriae;chaperone 10939 pefD 588858000016 pefD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S plasmid-encoded fimbriae;chaperone YP_005235547.1 10247 R 588858 CDS YP_005235548.1 378448056 complement(10932..13340) 1 NC_016855.1 plasmid-encoded fimbriae; usher protein 13340 pefC 588858000017 pefC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S plasmid-encoded fimbriae; usher protein YP_005235548.1 10932 R 588858 CDS YP_005235549.1 378448057 complement(13568..14086) 1 NC_016855.1 plasmid-encoded fimbriae; major fimbrial subunit 14086 pefA 588858000018 pefA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S plasmid-encoded fimbriae; major fimbrial subunit YP_005235549.1 13568 R 588858 CDS YP_005235550.1 378448058 complement(14361..14663) 1 NC_016855.1 plasmid-encoded fimbriae;regulation 14663 pefB 588858000019 pefB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S plasmid-encoded fimbriae;regulation YP_005235550.1 14361 R 588858 CDS YP_005235551.1 378448059 15560..15763 1 NC_016855.1 hypothetical protein 15763 588858000020 STM14_5545 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235551.1 15560 D 588858 CDS YP_005235552.1 378448060 complement(16635..17624) 1 NC_016855.1 DNA replication 17624 repA2 588858000021 repA2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA replication YP_005235552.1 16635 R 588858 CDS YP_005235553.1 378448061 17368..17676 1 NC_016855.1 hypothetical protein 17676 588858000022 STM14_5547 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235553.1 17368 D 588858 CDS YP_005235554.1 378448062 complement(18118..18414) 1 NC_016855.1 putative cytoplasmic protein 18414 588858000023 STM14_5548 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235554.1 18118 R 588858 CDS YP_005235555.1 378448063 complement(18898..19419) 1 NC_016855.1 hypothetical protein 19419 588858000024 STM14_5549 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235555.1 18898 R 588858 CDS YP_005235556.1 378448064 20095..20313 1 NC_016855.1 toxin addiction system: antidote 20313 ccdA 588858000025 ccdA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S toxin addiction system: antidote YP_005235556.1 20095 D 588858 CDS YP_005235557.1 378448065 20315..20620 1 NC_016855.1 toxin addiction system: toxin 20620 ccdB 588858000026 ccdB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S toxin addiction system: toxin YP_005235557.1 20315 D 588858 CDS YP_005235558.1 378448066 20622..20912 1 NC_016855.1 putative cytoplasmic protein 20912 588858000027 STM14_5552 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235558.1 20622 D 588858 CDS YP_005235559.1 378448067 20909..21430 1 NC_016855.1 putative cytoplasmic protein 21430 588858000028 STM14_5553 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235559.1 20909 D 588858 CDS YP_005235560.1 378448068 21465..22247 1 NC_016855.1 resolvase 22247 rsdB 588858000029 rsdB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S resolvase YP_005235560.1 21465 D 588858 CDS YP_005235561.1 378448069 22256..22807 1 NC_016855.1 diguanylate cyclase 22807 588858000030 STM14_5555 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S diguanylate cyclase YP_005235561.1 22256 D 588858 CDS YP_005235562.1 378448070 23476..23961 1 NC_016855.1 putative inner membrane protein 23961 588858000031 STM14_5556 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005235562.1 23476 D 588858 CDS YP_005235563.1 378448071 24681..25241 1 NC_016855.1 putative adhesin 25241 588858000032 STM14_5557 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative adhesin YP_005235563.1 24681 D 588858 CDS YP_005235564.1 378448072 complement(25308..25658) 1 NC_016855.1 putative transposase 25658 588858000033 STM14_5558 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transposase YP_005235564.1 25308 R 588858 CDS YP_005235565.1 378448073 25876..26139 1 NC_016855.1 putative transposase, IS200-like protein 26139 588858000034 STM14_5559 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transposase, IS200-like protein YP_005235565.1 25876 D 588858 CDS YP_005235566.1 378448074 complement(26266..26916) 1 NC_016855.1 involved in Salmonella plasmid virulence; hydrophilic protein 26916 spvD 588858000035 spvD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrophilic protein YP_005235566.1 26266 R 588858 CDS YP_005235567.1 378448075 complement(27177..27902) 1 NC_016855.1 involved in Salmonella plasmid virulence; hydrophilic protein 27902 spvC 588858000036 spvC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrophilic protein YP_005235567.1 27177 R 588858 CDS YP_005235568.1 378448076 complement(28183..29958) 1 NC_016855.1 involved in Salmonella plasmid virulence; hydrophilic protein 29958 spvB 588858000037 spvB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrophilic protein YP_005235568.1 28183 R 588858 CDS YP_005235569.1 378448077 complement(30140..30907) 1 NC_016855.1 involved in Salmonella plasmid virulence; outer membrane protein 30907 spvA 588858000038 spvA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane protein YP_005235569.1 30140 R 588858 CDS YP_005235570.1 378448078 complement(31419..32312) 1 NC_016855.1 involved in Salmonella plasmid virulence; regulation of spv operon, lysR family 32312 spvR 588858000039 spvR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S regulation of spv operon, lysR family YP_005235570.1 31419 R 588858 CDS YP_005235571.1 378448079 32921..33958 1 NC_016855.1 putative integrase protein 33958 588858000040 STM14_5565 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative integrase protein YP_005235571.1 32921 D 588858 CDS YP_005235572.1 378448080 complement(34147..35172) 1 NC_016855.1 putative phosphoribulokinase / uridine kinase family 35172 588858000041 STM14_5566 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phosphoribulokinase / uridine kinase family YP_005235572.1 34147 R 588858 CDS YP_005235573.1 378448081 complement(35105..36769) 1 NC_016855.1 putative integrase protein 36769 588858000042 STM14_5567 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative integrase protein YP_005235573.1 35105 R 588858 CDS YP_005235574.1 378448082 complement(36753..37313) 1 NC_016855.1 putative resolvase 37313 rlgA 588858000043 rlgA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative resolvase YP_005235574.1 36753 R 588858 CDS YP_005235575.1 378448083 complement(37520..38260) 1 NC_016855.1 putative carbonic anhydrase 38260 588858000044 STM14_5569 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative carbonic anhydrase YP_005235575.1 37520 R 588858 CDS YP_005235576.1 378448084 complement(38915..39403) 1 NC_016855.1 putative cytoplasmic protein 39403 588858000045 STM14_5570 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235576.1 38915 R 588858 CDS YP_005235577.1 378448085 39662..40777 1 NC_016855.1 alpha-helical coiled coil protein 40777 tlpA 588858000046 tlpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S alpha-helical coiled coil protein YP_005235577.1 39662 D 588858 CDS YP_005235578.1 378448086 40863..41279 1 NC_016855.1 putative DNA polymerase III epsilon subunit (3'-5' exonuclease) 41279 588858000047 STM14_5572 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA polymerase III epsilon subunit (3'-5' exonuclease) YP_005235578.1 40863 D 588858 CDS YP_005235579.1 378448087 complement(40973..41299) 1 NC_016855.1 putative cytoplasmic protein 41299 588858000048 STM14_5573 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235579.1 40973 R 588858 CDS YP_005235580.1 378448088 complement(42453..43394) 1 NC_016855.1 putative cytoplasmic protein 43394 588858000049 STM14_5574 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235580.1 42453 R 588858 CDS YP_005235581.1 378448089 43809..45014 1 NC_016855.1 plasmid partition protein A 45014 parA 588858000050 parA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S plasmid partition protein A YP_005235581.1 43809 D 588858 CDS YP_005235582.1 378448090 45011..45988 1 NC_016855.1 plasmid partition protein B 45988 parB 588858000051 parB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S plasmid partition protein B YP_005235582.1 45011 D 588858 CDS YP_005235583.1 378448091 complement(46070..47344) 1 NC_016855.1 mutagenesis by UV and mutagens; related to umuDC operon; SamB 47344 samB 588858000052 samB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S SamB YP_005235583.1 46070 R 588858 CDS YP_005235584.1 378448092 complement(47344..47766) 1 NC_016855.1 mutagenesis by UV and mutagens; related to umuDC operon; SamA 47766 samA 588858000053 samA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S SamA YP_005235584.1 47344 R 588858 CDS YP_005235585.1 378448093 48277..48747 1 NC_016855.1 putative cytoplasmic protein 48747 588858000054 STM14_5579 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235585.1 48277 D 588858 CDS YP_005235586.1 378448094 48740..49096 1 NC_016855.1 putative cytoplasmic protein 49096 588858000055 STM14_5580 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235586.1 48740 D 588858 CDS YP_005235587.1 378448095 49478..50158 1 NC_016855.1 putative adenine-specific DNA methylase 50158 588858000056 STM14_5581 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative adenine-specific DNA methylase YP_005235587.1 49478 D 588858 CDS YP_005235588.1 378448096 50158..50379 1 NC_016855.1 putative cytoplasmic protein 50379 588858000057 STM14_5582 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235588.1 50158 D 588858 CDS YP_005235589.1 378448097 50920..51684 1 NC_016855.1 putative inner membrane protein 51684 588858000058 STM14_5583 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005235589.1 50920 D 588858 CDS YP_005235590.1 378448098 52180..52614 1 NC_016855.1 putative cytoplasmic protein 52614 588858000059 STM14_5584 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235590.1 52180 D 588858 CDS YP_005235591.1 378448099 52681..53115 1 NC_016855.1 putative cytoplasmic protein 53115 588858000060 STM14_5585 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235591.1 52681 D 588858 CDS YP_005235592.1 378448100 53351..53674 1 NC_016855.1 putative inner membrane protein 53674 588858000061 STM14_5586 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005235592.1 53351 D 588858 CDS YP_005235593.1 378448101 54375..54893 1 NC_016855.1 single-strand binding protein 54893 ssbB 588858000062 ssbB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S single-strand binding protein YP_005235593.1 54375 D 588858 CDS YP_005235594.1 378448102 54948..55190 1 NC_016855.1 putative cytoplasmic protein 55190 588858000063 STM14_5588 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235594.1 54948 D 588858 CDS YP_005235595.1 378448103 55259..57256 1 NC_016855.1 putative ParB-like nuclease domain protein 57256 588858000064 STM14_5589 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ParB-like nuclease domain protein YP_005235595.1 55259 D 588858 CDS YP_005235596.1 378448104 57296..57730 1 NC_016855.1 Plasmid SOS inhibition 57730 psiB 588858000065 psiB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Plasmid SOS inhibition YP_005235596.1 57296 D 588858 CDS YP_005235597.1 378448105 57727..58464 1 NC_016855.1 Plasmid SOS inhibition 58464 psiA 588858000066 psiA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Plasmid SOS inhibition YP_005235597.1 57727 D 588858 CDS YP_005235598.1 378448106 complement(60103..60573) 1 NC_016855.1 putative transglycosylase 60573 finP 588858000067 finP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transglycosylase YP_005235598.1 60103 R 588858 CDS YP_005235599.1 378448107 60988..61368 1 NC_016855.1 conjugative transfer: mating signal 61368 traM 588858000068 traM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: mating signal YP_005235599.1 60988 D 588858 CDS YP_005235600.1 378448108 61561..62247 1 NC_016855.1 conjugative transfer: regulation 62247 traJ 588858000070 traJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: regulation YP_005235600.1 61561 D 588858 CDS YP_005235601.1 378448109 62248..62568 1 NC_016855.1 conjugative transfer: oriT nicking 62568 traY 588858000071 traY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: oriT nicking YP_005235601.1 62248 D 588858 CDS YP_005235602.1 378448110 62610..62972 1 NC_016855.1 conjugative transfer: fimbrial subunit 62972 traA 588858000072 traA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: fimbrial subunit YP_005235602.1 62610 D 588858 CDS YP_005235603.1 378448111 62987..63298 1 NC_016855.1 conjugative transfer: assembly 63298 traL 588858000073 traL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: assembly YP_005235603.1 62987 D 588858 CDS YP_005235604.1 378448112 63320..63886 1 NC_016855.1 conjugative transfer: assembly 63886 traE 588858000074 traE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: assembly YP_005235604.1 63320 D 588858 CDS YP_005235605.1 378448113 63873..64613 1 NC_016855.1 conjugative transfer: assembly 64613 traK 588858000075 traK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: assembly YP_005235605.1 63873 D 588858 CDS YP_005235606.1 378448114 64613..66034 1 NC_016855.1 conjugative transfer: assembly 66034 traB 588858000076 traB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: assembly YP_005235606.1 64613 D 588858 CDS YP_005235607.1 378448115 66024..66620 1 NC_016855.1 conjugative transfer protein 66620 traP 588858000077 traP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer protein YP_005235607.1 66024 D 588858 CDS YP_005235608.1 378448116 66598..66843 1 NC_016855.1 conjugative transfer protein 66843 trbD 588858000078 trbD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer protein YP_005235608.1 66598 D 588858 CDS YP_005235609.1 378448117 66840..67355 1 NC_016855.1 conjugative transfer: assembly 67355 traV 588858000079 traV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: assembly YP_005235609.1 66840 D 588858 CDS YP_005235610.1 378448118 67490..67711 1 NC_016855.1 conjugative transfer protein 67711 traR 588858000080 traR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer protein YP_005235610.1 67490 D 588858 CDS YP_005235611.1 378448119 67704..68171 1 NC_016855.1 conjugative transfer protein 68171 588858000081 STM14_5606 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer protein YP_005235611.1 67704 D 588858 CDS YP_005235612.1 378448120 68567..71215 1 NC_016855.1 conjugative transfer: assembly 71215 traC 588858000082 traC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: assembly YP_005235612.1 68567 D 588858 CDS YP_005235613.1 378448121 71190..71576 1 NC_016855.1 conjugative transfer protein 71576 trbI 588858000083 trbI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer protein YP_005235613.1 71190 D 588858 CDS YP_005235614.1 378448122 71573..72205 1 NC_016855.1 conjugative transfer: assembly 72205 traW 588858000084 traW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: assembly YP_005235614.1 71573 D 588858 CDS YP_005235615.1 378448123 72202..73194 1 NC_016855.1 conjugative transfer: assembly 73194 traU 588858000085 traU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: assembly YP_005235615.1 72202 D 588858 CDS YP_005235616.1 378448124 73213..73521 1 NC_016855.1 conjugative transfer protein 73521 588858000086 STM14_5611 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer protein YP_005235616.1 73213 D 588858 CDS YP_005235617.1 378448125 73506..74144 1 NC_016855.1 conjugative transfer: assembly 74144 trbC 588858000087 trbC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: assembly YP_005235617.1 73506 D 588858 CDS YP_005235618.1 378448126 74597..76423 1 NC_016855.1 conjugative transfer: aggregate stability 76423 traN 588858000088 traN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: aggregate stability YP_005235618.1 74597 D 588858 CDS YP_005235619.1 378448127 76434..76649 1 NC_016855.1 conjugative transfer protein 76649 trbE 588858000089 trbE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer protein YP_005235619.1 76434 D 588858 CDS YP_005235620.1 378448128 76661..77410 1 NC_016855.1 conjugative transfer: assembly 77410 traF 588858000090 traF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: assembly YP_005235620.1 76661 D 588858 CDS YP_005235621.1 378448129 77624..77917 1 NC_016855.1 conjugative transfer: fimbrial synthesis 77917 traQ 588858000091 traQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: fimbrial synthesis YP_005235621.1 77624 D 588858 CDS YP_005235622.1 378448130 77904..78452 1 NC_016855.1 conjugative transfer protein 78452 trbB 588858000092 trbB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer protein YP_005235622.1 77904 D 588858 CDS YP_005235623.1 378448131 78442..79824 1 NC_016855.1 conjugative transfer: assembly 79824 traH 588858000093 traH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: assembly YP_005235623.1 78442 D 588858 CDS YP_005235624.1 378448132 79821..82643 1 NC_016855.1 conjugative transfer: assembly abd aggregate stability 82643 traG 588858000094 traG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: assembly abd aggregate stability YP_005235624.1 79821 D 588858 CDS YP_005235625.1 378448133 82659..83153 1 NC_016855.1 conjugative transfer: surface exclusion 83153 traS 588858000095 traS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: surface exclusion YP_005235625.1 82659 D 588858 CDS YP_005235626.1 378448134 83189..83920 1 NC_016855.1 conjugative transfer: surface exclusion 83920 traT 588858000096 traT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: surface exclusion YP_005235626.1 83189 D 588858 CDS YP_005235627.1 378448135 84297..86459 1 NC_016855.1 conjugative transfer: DNA transport 86459 traD 588858000097 traD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: DNA transport YP_005235627.1 84297 D 588858 CDS YP_005235628.1 378448136 86459..87178 1 NC_016855.1 conjugative transfer protein 87178 trbH 588858000098 trbH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer protein YP_005235628.1 86459 D 588858 CDS YP_005235629.1 378448137 complement(86468..86866) 1 NC_016855.1 similar to Shigella flexneri mvpA; MvpA-like protein 86866 588858000099 STM14_5624 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S MvpA-like protein YP_005235629.1 86468 R 588858 CDS YP_005235630.1 378448138 complement(86866..87096) 1 NC_016855.1 putative cytoplasmic protein 87096 588858000100 STM14_5625 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235630.1 86866 R 588858 CDS YP_005235631.1 378448139 87175..92433 1 NC_016855.1 conjugative transfer: oriT nicking-unwinding 92433 traI 588858000101 traI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: oriT nicking-unwinding YP_005235631.1 87175 D 588858 CDS YP_005235632.1 378448140 92453..93193 1 NC_016855.1 conjugative transfer: fimbrial acetylation 93193 traX 588858000102 traX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: fimbrial acetylation YP_005235632.1 92453 D 588858 CDS YP_005235633.1 378448141 93248..93811 1 NC_016855.1 conjugative transfer: regulation 93811 finO 588858000103 finO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer: regulation YP_005235633.1 93248 D 588858 CDS YP_005235634.1 378448275 190..255 1 NC_016856.1 similar to Escherichia coli thr operon leader peptide (AAC73112.1); thr operon leader peptide 255 thrL 588858000104 thrL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thr operon leader peptide YP_005235634.1 190 D 588858 CDS YP_005235635.1 378448276 337..2799 1 NC_016856.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 2799 thrA 588858000105 thrA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional aspartokinase I/homoserine dehydrogenase I YP_005235635.1 337 D 588858 CDS YP_005235636.1 378448277 2801..3730 1 NC_016856.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 3730 thrB 588858000106 thrB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S homoserine kinase YP_005235636.1 2801 D 588858 CDS YP_005235637.1 378448278 3734..5020 1 NC_016856.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 5020 thrC 588858000107 thrC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S threonine synthase YP_005235637.1 3734 D 588858 CDS YP_005235638.1 378448279 complement(5114..5887) 1 NC_016856.1 hypothetical protein 5887 yaaA 588858000108 yaaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235638.1 5114 R 588858 CDS YP_005235639.1 378448280 complement(5966..7396) 1 NC_016856.1 similar to Escherichia coli inner membrane transport protein (AAC73118.1); AGCS family; putative alanine/glycine transport protein 7396 yaaJ 588858000109 yaaJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative alanine/glycine transport protein YP_005235639.1 5966 R 588858 CDS YP_005235640.1 378448281 7665..8618 1 NC_016856.1 Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B 8618 talB 588858000110 talB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transaldolase B YP_005235640.1 7665 D 588858 CDS YP_005235641.1 378448282 8729..9319 1 NC_016856.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein 9319 mogA 588858000111 mogA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S molybdenum cofactor biosynthesis protein YP_005235641.1 8729 D 588858 CDS YP_005235642.1 378448283 complement(9376..9942) 1 NC_016856.1 hypothetical protein 9942 yaaH 588858000112 yaaH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235642.1 9376 R 588858 CDS YP_005235643.1 378448284 complement(10092..10805) 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC73122.1); regulator for sigma H promoters/sigma 32 promoters permitting growth at high temperature; hypothetical protein 10805 htgA 588858000113 htgA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235643.1 10092 R 588858 CDS YP_005235644.1 378448285 complement(10841..11245) 1 NC_016856.1 hypothetical protein 11245 yaaI 588858000114 yaaI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235644.1 10841 R 588858 CDS YP_005235645.1 378448286 11257..11424 1 NC_016856.1 hypothetical protein 11424 588858000115 STM14_0012 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235645.1 11257 D 588858 CDS YP_005235646.1 378448287 11593..13509 1 NC_016856.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 13509 dnaK 588858000116 dnaK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S molecular chaperone DnaK YP_005235646.1 11593 D 588858 CDS YP_005235647.1 378448288 13595..14734 1 NC_016856.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 14734 dnaJ 588858000117 dnaJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chaperone protein DnaJ YP_005235647.1 13595 D 588858 CDS YP_005235648.1 378448289 14845..14958 1 NC_016856.1 hypothetical protein 14958 588858000118 STM14_0015 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235648.1 14845 D 588858 CDS YP_005235649.1 378448290 15014..15961 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73704.1); LysR family; putative transcriptional regulator 15961 588858000119 STM14_0016 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005235649.1 15014 D 588858 CDS YP_005235650.1 378448291 16088..16432 1 NC_016856.1 putative bacteriophage protein 16432 588858000120 STM14_0017 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative bacteriophage protein YP_005235650.1 16088 D 588858 CDS YP_005235651.1 378448292 complement(16493..17026) 1 NC_016856.1 hypothetical protein 17026 588858000121 STM14_0018 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235651.1 16493 R 588858 CDS YP_005235652.1 378448293 complement(17043..17486) 1 NC_016856.1 similar to Escherichia coli putative sensory transducer (AAC75886.1); hypothetical protein 17486 588858000122 STM14_0019 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235652.1 17043 R 588858 CDS YP_005235653.1 378448294 complement(17613..17741) 1 NC_016856.1 hypothetical protein 17741 588858000123 STM14_0020 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235653.1 17613 R 588858 CDS YP_005235654.1 378448295 17665..17787 1 NC_016856.1 hypothetical protein 17787 588858000124 STM14_0021 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235654.1 17665 D 588858 CDS YP_005235655.1 378448296 17867..19966 1 NC_016856.1 putative exochitinase 19966 588858000125 STM14_0022 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative exochitinase YP_005235655.1 17867 D 588858 CDS YP_005235656.1 378448297 20058..23054 1 NC_016856.1 putative hydroxymethyltransferase 23054 588858000126 STM14_0023 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydroxymethyltransferase YP_005235656.1 20058 D 588858 CDS YP_005235657.1 378448298 23091..23240 1 NC_016856.1 hypothetical protein 23240 588858000127 STM14_0024 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235657.1 23091 D 588858 CDS YP_005235658.1 378448299 23335..24039 1 NC_016856.1 putative cytoplasmic protein 24039 588858000128 STM14_0025 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235658.1 23335 D 588858 CDS YP_005235659.1 378448300 complement(24094..24198) 1 NC_016856.1 hypothetical protein 24198 588858000129 STM14_0026 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235659.1 24094 R 588858 CDS YP_005235660.1 378448301 24316..24426 1 NC_016856.1 hypothetical protein 24426 588858000130 STM14_0027 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235660.1 24316 D 588858 CDS YP_005235661.1 378448302 24469..25011 1 NC_016856.1 fimbrial subunit (gi|4959511); fimbrial subunit 25011 bcfA 588858000131 bcfA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fimbrial subunit YP_005235661.1 24469 D 588858 CDS YP_005235662.2 410023154 25112..25798 1 NC_016856.1 fimbrial chaperone (gi|4959512); fimbrial chaperone 25798 bcfB 588858000132 bcfB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fimbrial chaperone YP_005235662.2 25112 D 588858 CDS YP_005235663.1 378448304 25803..28424 1 NC_016856.1 bovine colonization factor BcfC (gi|4530570); fimbrial usher 28424 bcfC 588858000133 bcfC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fimbrial usher YP_005235663.1 25803 D 588858 CDS YP_005235664.1 378448305 28425..29432 1 NC_016856.1 fimbrial subunit (gi|4959514); fimbrial subunit 29432 bcfD 588858000134 bcfD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fimbrial subunit YP_005235664.1 28425 D 588858 CDS YP_005235665.1 378448306 29433..29978 1 NC_016856.1 fimbrial subunit (gi|4959515); fimbrial subunit 29978 bcfE 588858000135 bcfE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fimbrial subunit YP_005235665.1 29433 D 588858 CDS YP_005235666.1 378448307 29994..30512 1 NC_016856.1 fimbrial subunit (gi|4959516); fimbrial subunit 30512 bcfF 588858000136 bcfF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fimbrial subunit YP_005235666.1 29994 D 588858 CDS YP_005235667.1 378448308 30478..31209 1 NC_016856.1 fimbrial chaperone (gi|4959517); fimbrial chaperone 31209 bcfG 588858000137 bcfG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fimbrial chaperone YP_005235667.1 30478 D 588858 CDS YP_005235668.1 378448309 31274..32119 1 NC_016856.1 putative thiol-disulfide isomerase 32119 bcfH 588858000138 bcfH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative thiol-disulfide isomerase YP_005235668.1 31274 D 588858 CDS YP_005235669.1 378448310 32116..32445 1 NC_016856.1 hypothetical protein 32445 588858000139 STM14_0036 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235669.1 32116 D 588858 CDS YP_005235670.1 378448311 complement(32545..32994) 1 NC_016856.1 putative transcriptional regulator MarT (gi|4324612); putative transcriptional regulator 32994 588858000140 STM14_0037 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005235670.1 32545 R 588858 CDS YP_005235671.1 378448312 33364..34368 1 NC_016856.1 similar to LeuO (gi|6650098); LysR family; putative transcriptional regulator 34368 588858000141 STM14_0038 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005235671.1 33364 D 588858 CDS YP_005235672.1 378448313 complement(34376..34816) 1 NC_016856.1 putative transcriptional regulator MarT (gi|4324612); putative transcriptional regulator 34816 588858000142 STM14_0039 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005235672.1 34376 R 588858 CDS YP_005235673.1 378448314 34828..34974 1 NC_016856.1 hypothetical protein 34974 588858000143 STM14_0040 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235673.1 34828 D 588858 CDS YP_005235674.1 378448315 35339..37057 1 NC_016856.1 putative arylsulfatase 37057 588858000144 STM14_0041 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative arylsulfatase YP_005235674.1 35339 D 588858 CDS YP_005235675.1 378448316 complement(37103..38674) 1 NC_016856.1 similar to Escherichia coli UDP-sugar hydrolase (5'-nucleotidase) (AAC73582.1); putative 5'-nucleotidase 38674 588858000145 STM14_0042 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative 5'-nucleotidase YP_005235675.1 37103 R 588858 CDS YP_005235676.1 378448317 complement(38773..39534) 1 NC_016856.1 similar to Escherichia coli putative sugar hydrolase (AAC75461.1); putative outer membrane/exported protein 39534 588858000146 STM14_0043 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane/exported protein YP_005235676.1 38773 R 588858 CDS YP_005235677.1 378448318 40131..41624 1 NC_016856.1 similar to Escherichia coli putative sulfatase (AAC76701.1); putative arylsulfatase 41624 588858000147 STM14_0044 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative arylsulfatase YP_005235677.1 40131 D 588858 CDS YP_005235678.1 378448319 41723..42913 1 NC_016856.1 similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1); putative arylsulfatase regulator 42913 588858000148 STM14_0045 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative arylsulfatase regulator YP_005235678.1 41723 D 588858 CDS YP_005235679.1 378448320 42932..44185 1 NC_016856.1 putative cytoplasmic protein 44185 588858000149 STM14_0046 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235679.1 42932 D 588858 CDS YP_005235680.1 378448321 44312..46027 1 NC_016856.1 putative arylsulfatase 46027 588858000150 STM14_0047 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative arylsulfatase YP_005235680.1 44312 D 588858 CDS YP_005235681.1 378448322 46190..47356 1 NC_016856.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 47356 nhaA 588858000151 nhaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pH-dependent sodium/proton antiporter YP_005235681.1 46190 D 588858 CDS YP_005235682.1 378448323 47418..48317 1 NC_016856.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 48317 nhaR 588858000152 nhaR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional activator NhaR YP_005235682.1 47418 D 588858 CDS YP_005235683.1 378448324 complement(48372..50411) 1 NC_016856.1 putative glycosyl hydrolase 50411 588858000153 STM14_0050 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycosyl hydrolase YP_005235683.1 48372 R 588858 CDS YP_005235684.1 378448325 complement(50451..51824) 1 NC_016856.1 similar to Escherichia coli putative permease (AAC76681.1); putative sodium galactoside symporter 51824 588858000154 STM14_0051 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sodium galactoside symporter YP_005235684.1 50451 R 588858 CDS YP_005235685.1 378448326 complement(52280..52543) 1 NC_016856.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 52543 rpsT 588858000155 rpsT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S20 YP_005235685.1 52280 R 588858 CDS YP_005235686.1 378448327 52649..52864 1 NC_016856.1 putative cytoplasmic protein 52864 yaaY 588858000156 yaaY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235686.1 52649 D 588858 CDS YP_005235687.1 378448328 52872..53810 1 NC_016856.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 53810 ribF 588858000157 ribF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional riboflavin kinase/FMN adenylyltransferase YP_005235687.1 52872 D 588858 CDS YP_005235688.1 378448329 53855..56689 1 NC_016856.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 56689 ileS 588858000158 ileS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S isoleucyl-tRNA synthetase YP_005235688.1 53855 D 588858 CDS YP_005235689.1 378448330 56689..57189 1 NC_016856.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 57189 lspA 588858000159 lspA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipoprotein signal peptidase YP_005235689.1 56689 D 588858 CDS YP_005235690.1 378448331 57203..57334 1 NC_016856.1 hypothetical protein 57334 588858000160 STM14_0057 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235690.1 57203 D 588858 CDS YP_005235691.1 378448332 57344..57793 1 NC_016856.1 similar to Escherichia coli FKBX-type 16KD peptidyl-prolyl cis-trans isomerase; rotamase (AAC73139.1); FKBP-type peptidyl-prolyl cis-trans isomerase 57793 slpA 588858000161 slpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S FKBP-type peptidyl-prolyl cis-trans isomerase YP_005235691.1 57344 D 588858 CDS YP_005235692.1 378448333 57796..58746 1 NC_016856.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 58746 ispH 588858000162 ispH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_005235692.1 57796 D 588858 CDS YP_005235693.1 378448334 58946..60148 1 NC_016856.1 putative nitrite reductase 60148 588858000163 STM14_0060 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative nitrite reductase YP_005235693.1 58946 D 588858 CDS YP_005235694.1 378448335 60164..61084 1 NC_016856.1 catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 61084 rihC 588858000164 rihC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonucleoside hydrolase RihC YP_005235694.1 60164 D 588858 CDS YP_005235695.1 378448336 complement(61106..61792) 1 NC_016856.1 similar to Escherichia coli sequence similarity to Shigella regulator (AAC73721.1); sensor for citrate; putative transcriptional regulator 61792 588858000165 STM14_0062 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005235695.1 61106 R 588858 CDS YP_005235696.1 378448337 complement(61794..63413) 1 NC_016856.1 similar to Escherichia coli putative sensor-type protein (AAC73720.1); histidine kinase for citrate; putative transcriptional regulator 63413 588858000166 STM14_0063 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005235696.1 61794 R 588858 CDS YP_005235697.1 378448338 complement(63548..64849) 1 NC_016856.1 oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY); putative oxalacetate decarboxylase subunit beta 64849 588858000167 STM14_0064 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative oxalacetate decarboxylase subunit beta YP_005235697.1 63548 R 588858 CDS YP_005235698.1 378448339 complement(64862..66637) 1 NC_016856.1 catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B 66637 588858000168 STM14_0065 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyruvate carboxylase subunit B YP_005235698.1 64862 R 588858 CDS YP_005235699.1 378448340 complement(66654..66893) 1 NC_016856.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 66893 588858000169 STM14_0066 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S oxaloacetate decarboxylase subunit gamma YP_005235699.1 66654 R 588858 CDS YP_005235700.1 378448341 complement(67052..68392) 1 NC_016856.1 putative citrate-sodium symporter 68392 588858000170 STM14_0067 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative citrate-sodium symporter YP_005235700.1 67052 R 588858 CDS YP_005235701.1 378448342 complement(68513..68671) 1 NC_016856.1 hypothetical protein 68671 588858000171 STM14_0068 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235701.1 68513 R 588858 CDS YP_005235702.1 378448343 68637..69680 1 NC_016856.1 similar to Escherichia coli citrate lyase synthetase; citrate (pro-3S)-lyase ligase (AAC73719.1); putative citrate lyase synthetase 69680 citC2 588858000172 citC2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative citrate lyase synthetase YP_005235702.1 68637 D 588858 CDS YP_005235703.1 378448344 69710..70003 1 NC_016856.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 70003 citD2 588858000173 citD2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S citrate lyase subunit gamma YP_005235703.1 69710 D 588858 CDS YP_005235704.1 378448345 70000..70869 1 NC_016856.1 similar to Escherichia coli citrate lyase beta chain; acyl lyase subunit (AAC73717.1); putative citrate lyase beta chain 70869 citE2 588858000174 citE2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative citrate lyase beta chain YP_005235704.1 70000 D 588858 CDS YP_005235705.1 378448346 70880..72400 1 NC_016856.1 similar to Escherichia coli citrate lyase alpha chain (AAC73716.1); putative citrate lyase alpha chain/citrate-ACP transferase 72400 citF2 588858000175 citF2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative citrate lyase alpha chain/citrate-ACP transferase YP_005235705.1 70880 D 588858 CDS YP_005235706.1 378448347 72400..72951 1 NC_016856.1 putative cytoplasmic protein 72951 citX2 588858000176 citX2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235706.1 72400 D 588858 CDS YP_005235707.1 378448348 72929..73837 1 NC_016856.1 putative modifier of citrate lyase protein; triphosphoribosyl-dephospho-CoA synthase 73837 citG2 588858000177 citG2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S triphosphoribosyl-dephospho-CoA synthase YP_005235707.1 72929 D 588858 CDS YP_005235708.1 378448349 74017..74838 1 NC_016856.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 74838 dapB 588858000178 dapB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dihydrodipicolinate reductase YP_005235708.1 74017 D 588858 CDS YP_005235709.1 378448350 complement(74964..75239) 1 NC_016856.1 hypothetical protein 75239 588858000179 STM14_0076 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235709.1 74964 R 588858 CDS YP_005235710.1 378448351 75881..77029 1 NC_016856.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 77029 carA 588858000180 carA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S carbamoyl phosphate synthase small subunit YP_005235710.1 75881 D 588858 CDS YP_005235711.1 378448352 77048..80275 1 NC_016856.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 80275 carB 588858000181 carB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S carbamoyl phosphate synthase large subunit YP_005235711.1 77048 D 588858 CDS YP_005235712.1 378448353 80354..80542 1 NC_016856.1 hypothetical protein 80542 588858000182 STM14_0079 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235712.1 80354 D 588858 CDS YP_005235713.1 378448354 80499..80957 1 NC_016856.1 transposase for insertion sequence element IS200 (SW:T200_SALTY); transposase 80957 tnpA_1 588858000183 tnpA_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transposase YP_005235713.1 80499 D 588858 CDS YP_005235714.1 378448355 81260..81655 1 NC_016856.1 regulator of carnitine metabolism; induces the caiTABCDE and fixABCX operons; DNA-binding transcriptional activator CaiF 81655 caiF 588858000184 caiF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional activator CaiF YP_005235714.1 81260 D 588858 CDS YP_005235715.1 378448356 complement(81732..82328) 1 NC_016856.1 involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE 82328 caiE 588858000185 caiE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S carnitine operon protein CaiE YP_005235715.1 81732 R 588858 CDS YP_005235716.1 378448357 complement(82437..83222) 1 NC_016856.1 catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase 83222 caiD 588858000186 caiD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S carnitinyl-CoA dehydratase YP_005235716.1 82437 R 588858 CDS YP_005235717.1 378448358 complement(83276..84829) 1 NC_016856.1 similar to Escherichia coli probable crotonobetaine/carnitine-CoA ligase (AAC73148.1); putative crotonobetaine/carnitine-CoA ligase 84829 caiC 588858000187 caiC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative crotonobetaine/carnitine-CoA ligase YP_005235717.1 83276 R 588858 CDS YP_005235718.1 378448359 complement(84892..86109) 1 NC_016856.1 catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; crotonobetainyl-CoA:carnitine CoA-transferase 86109 caiB 588858000188 caiB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S crotonobetainyl-CoA:carnitine CoA-transferase YP_005235718.1 84892 R 588858 CDS YP_005235719.1 378448360 complement(86109..86246) 1 NC_016856.1 hypothetical protein 86246 588858000189 STM14_0086 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235719.1 86109 R 588858 CDS YP_005235720.1 378448361 complement(86221..87363) 1 NC_016856.1 catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase 87363 caiA 588858000190 caiA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S crotonobetainyl-CoA dehydrogenase YP_005235720.1 86221 R 588858 CDS YP_005235721.1 378448362 complement(87398..88915) 1 NC_016856.1 catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter 88915 caiT 588858000191 caiT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-carnitine/gamma-butyrobetaine antiporter YP_005235721.1 87398 R 588858 CDS YP_005235722.1 378448363 89119..89328 1 NC_016856.1 hypothetical protein 89328 588858000192 STM14_0089 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235722.1 89119 D 588858 CDS YP_005235723.1 378448364 89396..90166 1 NC_016856.1 required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; putative electron transfer flavoprotein FixA 90166 fixA 588858000193 fixA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative electron transfer flavoprotein FixA YP_005235723.1 89396 D 588858 CDS YP_005235724.1 378448365 90182..91123 1 NC_016856.1 involved in electron transfer during carnitine metabolism; putative electron transfer flavoprotein FixB 91123 fixB 588858000194 fixB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative electron transfer flavoprotein FixB YP_005235724.1 90182 D 588858 CDS YP_005235725.1 378448366 91173..92459 1 NC_016856.1 FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; putative oxidoreductase FixC 92459 fixC 588858000195 fixC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative oxidoreductase FixC YP_005235725.1 91173 D 588858 CDS YP_005235726.1 378448367 92456..92743 1 NC_016856.1 similar to Escherichia coli putative ferredoxin (AAC73155.1); carnitine metabolism; putative ferredoxin 92743 fixX 588858000196 fixX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ferredoxin YP_005235726.1 92456 D 588858 CDS YP_005235727.1 378448368 92890..94230 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC73156.1); MFS family; putative transport protein 94230 yaaU 588858000197 yaaU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005235727.1 92890 D 588858 CDS YP_005235728.1 378448369 94319..94549 1 NC_016856.1 putative outer membrane lipoprotein 94549 588858000198 STM14_0095 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005235728.1 94319 D 588858 CDS YP_005235729.1 378448370 94843..95259 1 NC_016856.1 hypothetical protein 95259 588858000199 STM14_0096 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235729.1 94843 D 588858 CDS YP_005235730.1 378448371 complement(95263..95379) 1 NC_016856.1 hypothetical protein 95379 588858000200 STM14_0097 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235730.1 95263 R 588858 CDS YP_005235731.1 378448372 complement(95483..95773) 1 NC_016856.1 hypothetical protein 95773 588858000201 STM14_0098 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235731.1 95483 R 588858 CDS YP_005235732.1 378448373 95983..96177 1 NC_016856.1 putative inner membrane protein 96177 588858000202 STM14_0099 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005235732.1 95983 D 588858 CDS YP_005235733.1 378448374 96671..98560 1 NC_016856.1 similar to Escherichia coli putative sulfatase (AAC76701.1); putative sulfatase 98560 588858000203 STM14_0100 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sulfatase YP_005235733.1 96671 D 588858 CDS YP_005235734.1 378448375 complement(98644..98802) 1 NC_016856.1 hypothetical protein 98802 588858000204 STM14_0101 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235734.1 98644 R 588858 CDS YP_005235735.1 378448376 98738..99019 1 NC_016856.1 hypothetical protein 99019 588858000205 STM14_0102 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235735.1 98738 D 588858 CDS YP_005235736.1 378448377 98967..99497 1 NC_016856.1 Required for full activity of KefC, a potassium-proton antiporter; glutathione-regulated potassium-efflux system ancillary protein KefF 99497 yabF 588858000206 yabF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutathione-regulated potassium-efflux system ancillary protein KefF YP_005235736.1 98967 D 588858 CDS YP_005235737.1 378448378 99490..101352 1 NC_016856.1 transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC 101352 kefC 588858000207 kefC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutathione-regulated potassium-efflux system protein KefC YP_005235737.1 99490 D 588858 CDS YP_005235738.1 378448379 complement(101349..101474) 1 NC_016856.1 hypothetical protein 101474 588858000208 STM14_0105 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235738.1 101349 R 588858 CDS YP_005235739.1 378448380 101551..102030 1 NC_016856.1 catalyzes the reduction of dihydrofolate to tetrahydrofolate; dihydrofolate reductase 102030 folA 588858000209 folA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dihydrofolate reductase YP_005235739.1 101551 D 588858 CDS YP_005235740.1 378448381 complement(102136..102984) 1 NC_016856.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 102984 apaH 588858000210 apaH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S diadenosine tetraphosphatase YP_005235740.1 102136 R 588858 CDS YP_005235741.1 378448382 complement(102995..103372) 1 NC_016856.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 103372 apaG 588858000211 apaG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ApaG protein YP_005235741.1 102995 R 588858 CDS YP_005235742.1 378448383 complement(103375..104196) 1 NC_016856.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 104196 ksgA 588858000212 ksgA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dimethyladenosine transferase YP_005235742.1 103375 R 588858 CDS YP_005235743.1 378448384 complement(104193..105182) 1 NC_016856.1 NAD-dependent; catalyzes the oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which then decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 105182 pdxA_1 588858000213 pdxA_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-hydroxythreonine-4-phosphate dehydrogenase YP_005235743.1 104193 R 588858 CDS YP_005235744.1 378448385 complement(105182..106468) 1 NC_016856.1 Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB; peptidyl-prolyl cis-trans isomerase SurA 106468 surA 588858000214 surA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptidyl-prolyl cis-trans isomerase SurA YP_005235744.1 105182 R 588858 CDS YP_005235745.1 378448386 complement(106522..108882) 1 NC_016856.1 determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein 108882 imp 588858000215 imp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S organic solvent tolerance protein YP_005235745.1 106522 R 588858 CDS YP_005235746.1 378448387 complement(108892..109053) 1 NC_016856.1 hypothetical protein 109053 588858000216 STM14_0113 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235746.1 108892 R 588858 CDS YP_005235747.1 378448388 109136..109948 1 NC_016856.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; DNA-J like membrane chaperone protein 109948 djlA 588858000217 djlA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-J like membrane chaperone protein YP_005235747.1 109136 D 588858 CDS YP_005235748.1 378448389 complement(110043..110702) 1 NC_016856.1 catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; 23S rRNA/tRNA pseudouridine synthase A 110702 rluA 588858000218 rluA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 23S rRNA/tRNA pseudouridine synthase A YP_005235748.1 110043 R 588858 CDS YP_005235749.1 378448390 complement(110714..113620) 1 NC_016856.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 113620 hepA 588858000219 hepA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-dependent helicase HepA YP_005235749.1 110714 R 588858 CDS YP_005235750.1 378448391 complement(113794..116145) 1 NC_016856.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 116145 polB 588858000220 polB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA polymerase II YP_005235750.1 113794 R 588858 CDS YP_005235751.2 410023155 complement(116189..116809) 1 NC_016856.1 hypothetical protein 116809 588858000221 STM14_0118 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235751.2 116189 R 588858 CDS YP_005235752.1 378448393 117528..117947 1 NC_016856.1 putative cytoplasmic protein 117947 588858000222 STM14_0119 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235752.1 117528 D 588858 CDS YP_005235753.1 378448394 complement(117953..118648) 1 NC_016856.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 118648 araD 588858000223 araD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-ribulose-5-phosphate 4-epimerase YP_005235753.1 117953 R 588858 CDS YP_005235754.1 378448395 complement(118789..120291) 1 NC_016856.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 120291 araA 588858000224 araA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-arabinose isomerase YP_005235754.1 118789 R 588858 CDS YP_005235755.1 378448396 complement(120302..122011) 1 NC_016856.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 122011 araB 588858000225 araB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribulokinase YP_005235755.1 120302 R 588858 CDS YP_005235756.1 378448397 122352..123197 1 NC_016856.1 positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; DNA-binding transcriptional regulator AraC 123197 araC 588858000226 araC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator AraC YP_005235756.1 122352 D 588858 CDS YP_005235757.1 378448398 123316..124083 1 NC_016856.1 DedA family; hypothetical protein 124083 yabI 588858000227 yabI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235757.1 123316 D 588858 CDS YP_005235758.1 378448399 complement(124122..124829) 1 NC_016856.1 with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine transporter ATP-binding subunit 124829 thiQ 588858000228 thiQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiamine transporter ATP-binding subunit YP_005235758.1 124122 R 588858 CDS YP_005235759.1 378448400 complement(124813..126423) 1 NC_016856.1 permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 126423 thiP 588858000229 thiP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiamine transporter membrane protein YP_005235759.1 124813 R 588858 CDS YP_005235760.1 378448401 complement(126399..127382) 1 NC_016856.1 part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit 127382 tbpA 588858000230 tbpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiamine transporter substrate binding subunit YP_005235760.1 126399 R 588858 CDS YP_005235761.1 378448402 complement(127427..127546) 1 NC_016856.1 putative lipoprotein 127546 588858000231 STM14_0128 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative lipoprotein YP_005235761.1 127427 R 588858 CDS YP_005235762.1 378448403 complement(127560..129218) 1 NC_016856.1 activates sgrS under glucose-phosphate stress conditions; transcriptional regulator SgrR 129218 yabN 588858000232 yabN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator SgrR YP_005235762.1 127560 R 588858 CDS YP_005235763.1 378448404 complement(129166..129492) 1 NC_016856.1 hypothetical protein 129492 588858000233 STM14_0130 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235763.1 129166 R 588858 CDS YP_005235764.1 378448405 complement(129769..130374) 1 NC_016856.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 130374 leuD 588858000234 leuD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S isopropylmalate isomerase small subunit YP_005235764.1 129769 R 588858 CDS YP_005235765.1 378448406 complement(130385..131785) 1 NC_016856.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 131785 leuC 588858000235 leuC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S isopropylmalate isomerase large subunit YP_005235765.1 130385 R 588858 CDS YP_005235766.1 378448407 complement(131788..132879) 1 NC_016856.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 132879 leuB 588858000236 leuB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-isopropylmalate dehydrogenase YP_005235766.1 131788 R 588858 CDS YP_005235767.1 378448408 complement(132879..134450) 1 NC_016856.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 134450 leuA 588858000237 leuA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-isopropylmalate synthase YP_005235767.1 132879 R 588858 CDS YP_005235768.1 378448409 complement(134538..134624) 1 NC_016856.1 leu operon leader peptide (SW:LPL_SALTY); leu operon leader peptide 134624 leuL 588858000238 leuL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S leu operon leader peptide YP_005235768.1 134538 R 588858 CDS YP_005235769.1 378448410 complement(134689..134793) 1 NC_016856.1 hypothetical protein 134793 588858000239 STM14_0136 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235769.1 134689 R 588858 CDS YP_005235770.1 378448411 135067..135210 1 NC_016856.1 hypothetical protein 135210 588858000240 STM14_0137 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235770.1 135067 D 588858 CDS YP_005235771.1 378448412 135281..136225 1 NC_016856.1 activator for leuABCD operon; member of LysR family of transcriptional activators; leucine transcriptional activator 136225 leuO 588858000241 leuO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S leucine transcriptional activator YP_005235771.1 135281 D 588858 CDS YP_005235772.1 378448413 136610..138271 1 NC_016856.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; acetolactate synthase 3 catalytic subunit 138271 ilvI 588858000242 ilvI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acetolactate synthase 3 catalytic subunit YP_005235772.1 136610 D 588858 CDS YP_005235773.1 378448414 138274..138765 1 NC_016856.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 138765 ilvH 588858000243 ilvH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acetolactate synthase 3 regulatory subunit YP_005235773.1 138274 D 588858 CDS YP_005235774.1 378448415 complement(138755..138877) 1 NC_016856.1 hypothetical protein 138877 588858000244 STM14_0141 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235774.1 138755 R 588858 CDS YP_005235775.1 378448416 139049..140053 1 NC_016856.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 140053 fruR 588858000245 fruR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator FruR YP_005235775.1 139049 D 588858 CDS YP_005235776.1 378448417 complement(140204..140338) 1 NC_016856.1 hypothetical protein 140338 588858000246 STM14_0143 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235776.1 140204 R 588858 CDS YP_005235777.1 378448418 140496..140633 1 NC_016856.1 hypothetical protein 140633 588858000247 STM14_0144 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235777.1 140496 D 588858 CDS YP_005235778.1 378448419 140659..141117 1 NC_016856.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 141117 yabB 588858000248 yabB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell division protein MraZ YP_005235778.1 140659 D 588858 CDS YP_005235779.1 378448420 141119..142060 1 NC_016856.1 similar to Escherichia coli putative apolipoprotein (AAC73193.1); S-adenosyl-methyltransferase MraW 142060 mraW 588858000249 mraW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S S-adenosyl-methyltransferase MraW YP_005235779.1 141119 D 588858 CDS YP_005235780.1 378448421 142057..142422 1 NC_016856.1 membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL 142422 ftsL 588858000250 ftsL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell division protein FtsL YP_005235780.1 142057 D 588858 CDS YP_005235781.1 378448422 142438..144204 1 NC_016856.1 similar to Escherichia coli septum formation; penicillin-binding protein 3; peptidoglycan synthetase (AAC73195.1); division specific transpeptidase 144204 ftsI 588858000251 ftsI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S division specific transpeptidase YP_005235781.1 142438 D 588858 CDS YP_005235782.1 378448423 144191..145678 1 NC_016856.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 145678 murE 588858000252 murE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_005235782.1 144191 D 588858 CDS YP_005235783.1 378448424 145675..147033 1 NC_016856.1 similar to Escherichia coli D-alanine-D-alanine-adding enzyme (AAC73197.1); UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 147033 murF 588858000253 murF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_005235783.1 145675 D 588858 CDS YP_005235784.1 378448425 147027..148109 1 NC_016856.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 148109 mraY 588858000254 mraY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phospho-N-acetylmuramoyl-pentapeptide- transferase YP_005235784.1 147027 D 588858 CDS YP_005235785.1 378448426 148112..149428 1 NC_016856.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 149428 murD 588858000255 murD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_005235785.1 148112 D 588858 CDS YP_005235786.1 378448427 149428..150672 1 NC_016856.1 integral membrane protein involved in stabilizing FstZ ring during cell division; cell division protein FtsW 150672 ftsW 588858000256 ftsW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell division protein FtsW YP_005235786.1 149428 D 588858 CDS YP_005235787.1 378448428 150669..151736 1 NC_016856.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; N-acetylglucosaminyl transferase 151736 murG 588858000257 murG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N-acetylglucosaminyl transferase YP_005235787.1 150669 D 588858 CDS YP_005235788.1 378448429 151855..153330 1 NC_016856.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 153330 murC 588858000258 murC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UDP-N-acetylmuramate--L-alanine ligase YP_005235788.1 151855 D 588858 CDS YP_005235789.1 378448430 153323..154243 1 NC_016856.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 154243 ddl_2 588858000259 ddl_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-alanine--D-alanine ligase YP_005235789.1 153323 D 588858 CDS YP_005235790.1 378448431 154245..155075 1 NC_016856.1 involved in septum formation; cell division protein FtsQ 155075 ftsQ 588858000260 ftsQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell division protein FtsQ YP_005235790.1 154245 D 588858 CDS YP_005235791.1 378448432 155072..156334 1 NC_016856.1 ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 156334 ftsA 588858000261 ftsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell division protein FtsA YP_005235791.1 155072 D 588858 CDS YP_005235792.1 378448433 156395..157546 1 NC_016856.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 157546 ftsZ 588858000262 ftsZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell division protein FtsZ YP_005235792.1 156395 D 588858 CDS YP_005235793.1 378448434 157647..158564 1 NC_016856.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 158564 lpxC 588858000263 lpxC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_005235793.1 157647 D 588858 CDS YP_005235794.1 378448435 158843..159340 1 NC_016856.1 secM translational pause allows for the initiation of secA translation; SecA regulator SecM 159340 yacA 588858000264 yacA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S SecA regulator SecM YP_005235794.1 158843 D 588858 CDS YP_005235795.1 378448436 159402..162107 1 NC_016856.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 162107 secA 588858000265 secA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S preprotein translocase subunit SecA YP_005235795.1 159402 D 588858 CDS YP_005235796.1 378448437 162259..162654 1 NC_016856.1 similar to Escherichia coli 7,8-dihydro-8-oxoguanine-triphosphatase; prefers dGTP; causes AT-GC transversions (AAC73210.1); nucleoside triphosphate pyrophosphohydrolase 162654 mutT 588858000266 mutT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nucleoside triphosphate pyrophosphohydrolase YP_005235796.1 162259 D 588858 CDS YP_005235797.1 378448438 162875..162979 1 NC_016856.1 LysR family transcriptional regulator 162979 588858000268 STM14_0165 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S LysR family transcriptional regulator YP_005235797.1 162875 D 588858 CDS YP_005235798.1 378448439 complement(162976..163167) 1 NC_016856.1 zinc-binding protein 163167 yacG 588858000269 yacG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S zinc-binding protein YP_005235798.1 162976 R 588858 CDS YP_005235799.1 378448440 complement(163177..163920) 1 NC_016856.1 hypothetical protein 163920 yacF 588858000270 yacF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235799.1 163177 R 588858 CDS YP_005235800.1 378448441 complement(163920..164540) 1 NC_016856.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 164540 coaE 588858000271 coaE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dephospho-CoA kinase YP_005235800.1 163920 R 588858 CDS YP_005235801.1 378448442 164766..165809 1 NC_016856.1 catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 165809 guaC 588858000272 guaC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S guanosine 5'-monophosphate oxidoreductase YP_005235801.1 164766 D 588858 CDS YP_005235802.1 378448443 complement(165840..167042) 1 NC_016856.1 similar to Escherichia coli putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake (AAC73217.1); type IV pilin biogenesis protein 167042 hofC 588858000273 hofC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S type IV pilin biogenesis protein YP_005235802.1 165840 R 588858 CDS YP_005235803.1 378448444 complement(167032..168417) 1 NC_016856.1 similar to Escherichia coli putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake (AAC73218.1); hypothetical protein 168417 hofB 588858000274 hofB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235803.1 167032 R 588858 CDS YP_005235804.1 378448445 complement(168427..168864) 1 NC_016856.1 similar to Escherichia coli prepilin peptidase dependent protein (AAC73219.1); putative major pilin subunit 168864 ppdD 588858000275 ppdD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative major pilin subunit YP_005235804.1 168427 R 588858 CDS YP_005235805.1 378448446 complement(168890..169072) 1 NC_016856.1 hypothetical protein 169072 588858000276 STM14_0173 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235805.1 168890 R 588858 CDS YP_005235806.1 378448447 complement(169086..169979) 1 NC_016856.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; quinolinate phosphoribosyltransferase 169979 nadC 588858000277 nadC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S quinolinate phosphoribosyltransferase YP_005235806.1 169086 R 588858 CDS YP_005235807.1 378448448 170067..170630 1 NC_016856.1 AMPD protein (SW:AMPD_SALTY); N-acetyl-anhydromuranmyl-L-alanine amidase 170630 ampD 588858000278 ampD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N-acetyl-anhydromuranmyl-L-alanine amidase YP_005235807.1 170067 D 588858 CDS YP_005235808.1 378448449 170627..171481 1 NC_016856.1 involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 171481 ampE 588858000279 ampE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S regulatory protein AmpE YP_005235808.1 170627 D 588858 CDS YP_005235809.1 378448450 complement(171573..172523) 1 NC_016856.1 putative cytoplasmic protein 172523 588858000280 STM14_0177 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235809.1 171573 R 588858 CDS YP_005235810.1 378448451 complement(172523..173929) 1 NC_016856.1 Na+/galactoside symporter 173929 588858000281 STM14_0178 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Na+/galactoside symporter YP_005235810.1 172523 R 588858 CDS YP_005235811.1 378448452 complement(173962..174090) 1 NC_016856.1 hypothetical protein 174090 588858000282 STM14_0179 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235811.1 173962 R 588858 CDS YP_005235812.1 378448453 complement(174093..175466) 1 NC_016856.1 similar to Escherichia coli aromatic amino acid transport protein (AAC73223.1); APC family; aromatic amino acid transporter 175466 aroP 588858000283 aroP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aromatic amino acid transporter YP_005235812.1 174093 R 588858 CDS YP_005235813.1 378448454 175672..175794 1 NC_016856.1 hypothetical protein 175794 588858000284 STM14_0181 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235813.1 175672 D 588858 CDS YP_005235814.1 378448455 176029..176793 1 NC_016856.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 176793 pdhR 588858000285 pdhR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator PdhR YP_005235814.1 176029 D 588858 CDS YP_005235815.1 378448456 176953..179616 1 NC_016856.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 179616 aceE 588858000286 aceE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyruvate dehydrogenase subunit E1 YP_005235815.1 176953 D 588858 CDS YP_005235816.1 378448457 179631..181520 1 NC_016856.1 E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 181520 aceF 588858000287 aceF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dihydrolipoamide acetyltransferase YP_005235816.1 179631 D 588858 CDS YP_005235817.1 378448458 181720..183144 1 NC_016856.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 183144 lpdA 588858000288 lpdA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dihydrolipoamide dehydrogenase YP_005235817.1 181720 D 588858 CDS YP_005235818.1 378448459 183222..183350 1 NC_016856.1 hypothetical protein 183350 588858000289 STM14_0186 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235818.1 183222 D 588858 CDS YP_005235819.1 378448460 183433..183717 1 NC_016856.1 putative outer membrane protein 183717 588858000290 STM14_0187 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005235819.1 183433 D 588858 CDS YP_005235820.1 378448461 complement(183755..184546) 1 NC_016856.1 hypothetical protein 184546 588858000291 STM14_0188 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235820.1 183755 R 588858 CDS YP_005235821.1 378448462 186562..189159 1 NC_016856.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 189159 acnB 588858000293 acnB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_005235821.1 186562 D 588858 CDS YP_005235822.1 378448463 complement(189220..190062) 1 NC_016856.1 putative restriction endonuclease 190062 588858000294 STM14_0191 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative restriction endonuclease YP_005235822.1 189220 R 588858 CDS YP_005235823.1 378448464 190308..190670 1 NC_016856.1 hypothetical protein 190670 yacL 588858000295 yacL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235823.1 190308 D 588858 CDS YP_005235824.1 378448465 190905..191858 1 NC_016856.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 191858 kdgT 588858000296 kdgT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-keto-3-deoxygluconate permease YP_005235824.1 190905 D 588858 CDS YP_005235825.1 378448466 191855..193126 1 NC_016856.1 putative inner membrane protein 193126 588858000297 STM14_0194 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005235825.1 191855 D 588858 CDS YP_005235826.1 378448467 193116..194099 1 NC_016856.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 194099 pdxA_2 588858000298 pdxA_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-hydroxythreonine-4-phosphate dehydrogenase YP_005235826.1 193116 D 588858 CDS YP_005235827.1 378448468 194109..194876 1 NC_016856.1 similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC75777.1); LysR family; putative transcriptional regulator 194876 588858000299 STM14_0196 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005235827.1 194109 D 588858 CDS YP_005235828.1 378448469 complement(194906..195700) 1 NC_016856.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 195700 speD 588858000300 speD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S S-adenosylmethionine decarboxylase YP_005235828.1 194906 R 588858 CDS YP_005235829.1 378448470 complement(195721..196581) 1 NC_016856.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 196581 speE 588858000301 speE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S spermidine synthase YP_005235829.1 195721 R 588858 CDS YP_005235830.1 378448471 complement(196688..197035) 1 NC_016856.1 hypothetical protein 197035 yacC 588858000302 yacC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235830.1 196688 R 588858 CDS YP_005235831.1 378448472 197237..198847 1 NC_016856.1 laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; multicopper oxidase 198847 cueO 588858000303 cueO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multicopper oxidase YP_005235831.1 197237 D 588858 CDS YP_005235832.1 378448473 complement(198925..201315) 1 NC_016856.1 similar to Escherichia coli glucose dehydrogenase (AAC73235.1); glucose dehydrogenase 201315 gcd 588858000304 gcd Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucose dehydrogenase YP_005235832.1 198925 R 588858 CDS YP_005235833.1 378448474 201521..202057 1 NC_016856.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 202057 hpt 588858000305 hpt Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypoxanthine-guanine phosphoribosyltransferase YP_005235833.1 201521 D 588858 CDS YP_005235834.1 378448475 complement(202115..202777) 1 NC_016856.1 catalyzes the interconversion of bicarbonate and carbon dioxide; carbonic anhydrase 202777 yadF 588858000306 yadF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S carbonic anhydrase YP_005235834.1 202115 R 588858 CDS YP_005235835.1 378448476 202886..203812 1 NC_016856.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC73238.1); putative ABC-type multidrug transport system ATPase component 203812 yadG 588858000307 yadG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type multidrug transport system ATPase component YP_005235835.1 202886 D 588858 CDS YP_005235836.1 378448477 203809..204579 1 NC_016856.1 putative ABC superfamily membrane protein; putative transport protein 204579 yadH 588858000308 yadH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005235836.1 203809 D 588858 CDS YP_005235837.1 378448478 complement(204696..205775) 1 NC_016856.1 LpfD protein precursor (SW:LPFD_SALTY); putative fimbrial protein precurosr 205775 stiH 588858000309 stiH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial protein precurosr YP_005235837.1 204696 R 588858 CDS YP_005235838.1 378448479 complement(205784..208330) 1 NC_016856.1 similar to Escherichia coli putative outer membrane protein (AAC76178.1); fimbrial usher protein 208330 stiC 588858000310 stiC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fimbrial usher protein YP_005235838.1 205784 R 588858 CDS YP_005235839.1 378448480 complement(208357..209040) 1 NC_016856.1 similar to Escherichia coli periplasmic chaperone, required for type 1 fimbriae (AAC77272.1); putative fimbrial chaperone 209040 stiB 588858000311 stiB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial chaperone YP_005235839.1 208357 R 588858 CDS YP_005235840.1 378448481 complement(209088..209627) 1 NC_016856.1 similar to Escherichia coli major type 1 subunit fimbrin; pilin (AAC77270.1); putative fimbrial subunit 209627 stiA 588858000312 stiA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial subunit YP_005235840.1 209088 R 588858 CDS YP_005235841.1 378448482 complement(209796..209966) 1 NC_016856.1 hypothetical protein 209966 588858000313 STM14_0210 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235841.1 209796 R 588858 CDS YP_005235842.1 378448483 209997..210437 1 NC_016856.1 similar to Escherichia coli putative PTS enzyme II B component (AAC73240.1); putative PTS enzyme 210437 yadI 588858000314 yadI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative PTS enzyme YP_005235842.1 209997 D 588858 CDS YP_005235843.1 378448484 210499..211728 1 NC_016856.1 putative xylanase/chitin deacetylase 211728 yadE 588858000315 yadE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative xylanase/chitin deacetylase YP_005235843.1 210499 D 588858 CDS YP_005235844.1 378448485 complement(211735..212115) 1 NC_016856.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 212115 panD 588858000316 panD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aspartate alpha-decarboxylase YP_005235844.1 211735 R 588858 CDS YP_005235845.1 378448486 complement(212210..213064) 1 NC_016856.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 213064 panC 588858000317 panC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pantoate--beta-alanine ligase YP_005235845.1 212210 R 588858 CDS YP_005235846.1 378448487 complement(213058..213171) 1 NC_016856.1 hypothetical protein 213171 588858000318 STM14_0215 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235846.1 213058 R 588858 CDS YP_005235847.1 378448488 complement(213190..213981) 1 NC_016856.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 213981 panB 588858000319 panB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_005235847.1 213190 R 588858 CDS YP_005235848.1 378448489 complement(214102..214581) 1 NC_016856.1 catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 214581 folK 588858000320 folK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_005235848.1 214102 R 588858 CDS YP_005235849.1 378448490 complement(214578..215996) 1 NC_016856.1 Polymerase that creates the 3' poly(A) tail found in some mRNA's; poly(A) polymerase I 215996 pcnB 588858000321 pcnB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S poly(A) polymerase I YP_005235849.1 214578 R 588858 CDS YP_005235850.1 378448491 complement(216137..217033) 1 NC_016856.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 217033 yadB 588858000322 yadB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamyl-Q tRNA(Asp) synthetase YP_005235850.1 216137 R 588858 CDS YP_005235851.1 378448492 complement(217102..217557) 1 NC_016856.1 dnaK suppressor protein (SW:DKSA_SALTY); suppresses dnaK deletion; DnaK transcriptional regulator DksA 217557 dksA 588858000323 dksA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DnaK transcriptional regulator DksA YP_005235851.1 217102 R 588858 CDS YP_005235852.1 378448493 complement(217734..218438) 1 NC_016856.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 218438 sfsA 588858000324 sfsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sugar fermentation stimulation protein A YP_005235852.1 217734 R 588858 CDS YP_005235853.1 378448494 complement(218455..218985) 1 NC_016856.1 2'-5' RNA ligase 218985 ligT 588858000325 ligT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2'-5' RNA ligase YP_005235853.1 218455 R 588858 CDS YP_005235854.1 378448495 219013..221487 1 NC_016856.1 similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB 221487 hrpB 588858000326 hrpB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-dependent RNA helicase HrpB YP_005235854.1 219013 D 588858 CDS YP_005235855.1 378448496 221426..221587 1 NC_016856.1 hypothetical protein 221587 588858000327 STM14_0224 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235855.1 221426 D 588858 CDS YP_005235856.1 378448497 complement(221522..221629) 1 NC_016856.1 hypothetical protein 221629 588858000328 STM14_0225 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235856.1 221522 R 588858 CDS YP_005235857.1 378448498 221628..224150 1 NC_016856.1 bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell; penicillin-binding protein 1b 224150 mrcB 588858000329 mrcB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S penicillin-binding protein 1b YP_005235857.1 221628 D 588858 CDS YP_005235858.1 378448499 complement(224289..224429) 1 NC_016856.1 hypothetical protein 224429 588858000330 STM14_0227 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235858.1 224289 R 588858 CDS YP_005235859.1 378448500 224443..226632 1 NC_016856.1 involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; ferrichrome outer membrane transporter 226632 fhuA 588858000331 fhuA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ferrichrome outer membrane transporter YP_005235859.1 224443 D 588858 CDS YP_005235860.1 378448501 226681..227478 1 NC_016856.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; iron-hydroxamate transporter ATP-binding subunit 227478 fhuC 588858000332 fhuC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S iron-hydroxamate transporter ATP-binding subunit YP_005235860.1 226681 D 588858 CDS YP_005235861.1 378448502 227478..228368 1 NC_016856.1 Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; iron-hydroxamate transporter substrate-binding subunit 228368 fhuD 588858000333 fhuD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S iron-hydroxamate transporter substrate-binding subunit YP_005235861.1 227478 D 588858 CDS YP_005235862.1 378448503 228365..230422 1 NC_016856.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 230422 fhuB 588858000334 fhuB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S iron-hydroxamate transporter permease subunit YP_005235862.1 228365 D 588858 CDS YP_005235863.1 378448504 230459..230665 1 NC_016856.1 hypothetical protein 230665 588858000335 STM14_0232 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235863.1 230459 D 588858 CDS YP_005235864.1 378448505 231001..231144 1 NC_016856.1 hypothetical protein 231144 588858000336 STM14_0233 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235864.1 231001 D 588858 CDS YP_005235865.1 378448506 231361..231921 1 NC_016856.1 major fimbrial subunit StfA (gi|3747029); putative fimbrial subunit 231921 stfA 588858000337 stfA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial subunit YP_005235865.1 231361 D 588858 CDS YP_005235866.1 378448507 232007..234664 1 NC_016856.1 outer membrane usher protein StfC (gi|3747030); putative fimbrial outer membrane usher 234664 stfC 588858000338 stfC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial outer membrane usher YP_005235866.1 232007 D 588858 CDS YP_005235867.1 378448508 234682..235434 1 NC_016856.1 periplasmic fimbrial chaperone StfD (gi|3747031); putative periplasmic fimbrial chaperone 235434 stfD 588858000339 stfD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative periplasmic fimbrial chaperone YP_005235867.1 234682 D 588858 CDS YP_005235868.1 378448509 235453..235965 1 NC_016856.1 minor fimbrial subunit StfE (gi|3747032); putative minor fimbrial subunit 235965 stfE 588858000340 stfE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative minor fimbrial subunit YP_005235868.1 235453 D 588858 CDS YP_005235869.1 378448510 235962..236438 1 NC_016856.1 minor fimbrial subunit StfF (gi|3747033); putative minor fimbrial subunit 236438 stfF 588858000341 stfF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative minor fimbrial subunit YP_005235869.1 235962 D 588858 CDS YP_005235870.1 378448511 236438..236968 1 NC_016856.1 minor fimbrial subunit StfG (gi|3747034); putative adhesin; putative minor fimbrial subunit 236968 stfG 588858000342 stfG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative minor fimbrial subunit YP_005235870.1 236438 D 588858 CDS YP_005235871.1 378448512 236968..237807 1 NC_016856.1 hypothetical 30.2 da protein in stfG 3'region precursor (SW:YADU_SALTY); putative outer membrane protein 237807 588858000343 STM14_0240 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005235871.1 236968 D 588858 CDS YP_005235872.1 378448513 complement(237915..239195) 1 NC_016856.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 239195 hemL 588858000344 hemL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamate-1-semialdehyde aminotransferase YP_005235872.1 237915 R 588858 CDS YP_005235873.1 378448514 239222..239365 1 NC_016856.1 hypothetical protein 239365 588858000345 STM14_0242 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235873.1 239222 D 588858 CDS YP_005235874.1 378448515 239365..240786 1 NC_016856.1 Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein 240786 yadQ 588858000346 yadQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chloride channel protein YP_005235874.1 239365 D 588858 CDS YP_005235875.1 378448516 240868..241212 1 NC_016856.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 241212 yadR 588858000347 yadR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S iron-sulfur cluster insertion protein ErpA YP_005235875.1 240868 D 588858 CDS YP_005235876.1 378448517 complement(241313..241936) 1 NC_016856.1 hypothetical protein 241936 yadS 588858000348 yadS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235876.1 241313 R 588858 CDS YP_005235877.1 378448518 complement(241973..242773) 1 NC_016856.1 solute binding component of the vitamin B12 transport system BtuCDF; vitamin B12-transporter protein BtuF 242773 btuF 588858000349 btuF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S vitamin B12-transporter protein BtuF YP_005235877.1 241973 R 588858 CDS YP_005235878.1 378448519 complement(242766..243464) 1 NC_016856.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 243464 pfs 588858000350 pfs Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_005235878.1 242766 R 588858 CDS YP_005235879.1 378448520 243549..245066 1 NC_016856.1 forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 245066 dgt 588858000351 dgt Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S deoxyguanosinetriphosphate triphosphohydrolase YP_005235879.1 243549 D 588858 CDS YP_005235880.1 378448521 245196..246623 1 NC_016856.1 protease Do; required at high temperature; degrades damaged proteins; serine endoprotease 246623 htrA 588858000352 htrA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S serine endoprotease YP_005235880.1 245196 D 588858 CDS YP_005235881.1 378448522 246776..247933 1 NC_016856.1 regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization; carbohydrate diacid transcriptional activator CdaR 247933 cdaR 588858000353 cdaR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S carbohydrate diacid transcriptional activator CdaR YP_005235881.1 246776 D 588858 CDS YP_005235882.1 378448523 complement(248022..248408) 1 NC_016856.1 similar to Escherichia coli putative structural protein (AAC73274.1); hypothetical protein 248408 yaeH 588858000354 yaeH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235882.1 248022 R 588858 CDS YP_005235883.1 378448524 complement(249994..250818) 1 NC_016856.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 250818 dapD 588858000356 dapD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_005235883.1 249994 R 588858 CDS YP_005235884.1 378448525 complement(250848..253520) 1 NC_016856.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 253520 glnD 588858000357 glnD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S PII uridylyl-transferase YP_005235884.1 250848 R 588858 CDS YP_005235885.1 378448526 complement(253757..254551) 1 NC_016856.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 254551 map 588858000358 map Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S methionine aminopeptidase YP_005235885.1 253757 R 588858 CDS YP_005235886.1 378448527 254799..255083 1 NC_016856.1 30S ribosomal protein S2 255083 588858000359 STM14_0256 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S2 YP_005235886.1 254799 D 588858 CDS YP_005235887.1 378448528 255002..255727 1 NC_016856.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 255727 rpsB 588858000360 rpsB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S2 YP_005235887.1 255002 D 588858 CDS YP_005235888.1 378448529 255985..256836 1 NC_016856.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 256836 tsf 588858000361 tsf Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S elongation factor Ts YP_005235888.1 255985 D 588858 CDS YP_005235889.1 378448530 256981..257706 1 NC_016856.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 257706 pyrH 588858000362 pyrH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S uridylate kinase YP_005235889.1 256981 D 588858 CDS YP_005235890.1 378448531 257853..258410 1 NC_016856.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 258410 frr 588858000363 frr Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribosome recycling factor YP_005235890.1 257853 D 588858 CDS YP_005235891.1 378448532 258551..259747 1 NC_016856.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 259747 dxr 588858000364 dxr Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_005235891.1 258551 D 588858 CDS YP_005235892.1 378448533 259830..260033 1 NC_016856.1 hypothetical protein 260033 588858000365 STM14_0262 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235892.1 259830 D 588858 CDS YP_005235893.1 378448534 260060..260818 1 NC_016856.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 260818 uppS 588858000366 uppS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S undecaprenyl pyrophosphate synthase YP_005235893.1 260060 D 588858 CDS YP_005235894.1 378448535 260831..261688 1 NC_016856.1 catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; CDP-diglyceride synthase 261688 cdsA 588858000367 cdsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S CDP-diglyceride synthase YP_005235894.1 260831 D 588858 CDS YP_005235895.1 378448536 261700..263052 1 NC_016856.1 zinc metallopeptidase 263052 yaeL 588858000368 yaeL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S zinc metallopeptidase YP_005235895.1 261700 D 588858 CDS YP_005235896.1 378448537 263084..265498 1 NC_016856.1 part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor YaeT 265498 yaeT 588858000369 yaeT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane protein assembly factor YaeT YP_005235896.1 263084 D 588858 CDS YP_005235897.1 378448538 265621..266106 1 NC_016856.1 (SW:OMPH_SALTY); histone-like protein; periplasmic chaperone 266106 hlpA 588858000370 hlpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S periplasmic chaperone YP_005235897.1 265621 D 588858 CDS YP_005235898.1 378448539 266110..267135 1 NC_016856.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 267135 lpxD 588858000371 lpxD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_005235898.1 266110 D 588858 CDS YP_005235899.1 378448540 267151..267696 1 NC_016856.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 267696 fabZ 588858000372 fabZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (3R)-hydroxymyristoyl-ACP dehydratase YP_005235899.1 267151 D 588858 CDS YP_005235900.1 378448541 267700..268488 1 NC_016856.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 268488 lpxA 588858000373 lpxA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UDP-N-acetylglucosamine acyltransferase YP_005235900.1 267700 D 588858 CDS YP_005235901.1 378448542 268488..269636 1 NC_016856.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 269636 lpxB 588858000374 lpxB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipid-A-disaccharide synthase YP_005235901.1 268488 D 588858 CDS YP_005235902.1 378448543 269633..270229 1 NC_016856.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 270229 rnhB 588858000375 rnhB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonuclease HII YP_005235902.1 269633 D 588858 CDS YP_005235903.1 378448544 270253..273735 1 NC_016856.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 273735 dnaE 588858000376 dnaE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA polymerase III subunit alpha YP_005235903.1 270253 D 588858 CDS YP_005235904.1 378448545 273748..274707 1 NC_016856.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 274707 accA 588858000377 accA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_005235904.1 273748 D 588858 CDS YP_005235905.1 378448546 274887..276650 1 NC_016856.1 putative endochitinase 276650 588858000378 STM14_0275 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative endochitinase YP_005235905.1 274887 D 588858 CDS YP_005235906.1 378448547 276726..278867 1 NC_016856.1 similar to Escherichia coli lysine decarboxylase 2; constitutive (AAC73297.1); lysine decarboxylase 2 278867 ldcC 588858000379 ldcC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lysine decarboxylase 2 YP_005235906.1 276726 D 588858 CDS YP_005235907.1 378448548 278923..279312 1 NC_016856.1 hypothetical protein 279312 yaeR 588858000380 yaeR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235907.1 278923 D 588858 CDS YP_005235908.1 378448549 279375..280667 1 NC_016856.1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; tRNA(Ile)-lysidine synthetase 280667 tilS 588858000381 tilS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tRNA(Ile)-lysidine synthetase YP_005235908.1 279375 D 588858 CDS YP_005235909.1 378448550 complement(280751..281011) 1 NC_016856.1 Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination; Rho-binding antiterminator 281011 rof 588858000382 rof Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Rho-binding antiterminator YP_005235909.1 280751 R 588858 CDS YP_005235910.1 378448551 complement(280998..281216) 1 NC_016856.1 hypothetical protein 281216 yaeP 588858000383 yaeP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235910.1 280998 R 588858 CDS YP_005235911.1 378448552 281396..281941 1 NC_016856.1 hypothetical 20.8 kDa protein in mesJ-cutF intergenic region (SW:YAEQ_SALTY); putative cytoplasmic protein 281941 yaeQ 588858000384 yaeQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235911.1 281396 D 588858 CDS YP_005235912.1 378448553 281938..282360 1 NC_016856.1 putative-tRNA hydrolase domain; hypothetical protein 282360 yaeJ 588858000385 yaeJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235912.1 281938 D 588858 CDS YP_005235913.1 378448554 complement(283167..284885) 1 NC_016856.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 284885 proS 588858000387 proS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S prolyl-tRNA synthetase YP_005235913.1 283167 R 588858 CDS YP_005235914.1 378448555 complement(284996..285703) 1 NC_016856.1 putative regulatory protein 285703 yaeB 588858000388 yaeB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005235914.1 284996 R 588858 CDS YP_005235915.1 378448556 complement(285700..286104) 1 NC_016856.1 similar to Escherichia coli regulator in colanic acid synthesis; interacts with RcsB (AAC73307.1); overexpression confers mucoid phenotype, increases capsule synthesis; outer membrane lipoprotein 286104 rcsF 588858000389 rcsF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane lipoprotein YP_005235915.1 285700 R 588858 CDS YP_005235916.1 378448557 complement(286223..287038) 1 NC_016856.1 similar to Escherichia coli putative lipoprotein (AAC73308.1); DL-methionine transporter substrate-binding subunit 287038 metQ 588858000390 metQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DL-methionine transporter substrate-binding subunit YP_005235916.1 286223 R 588858 CDS YP_005235917.1 378448558 complement(287077..287730) 1 NC_016856.1 part of the MetNIQ methionine uptake system; DL-methionine transporter permease 287730 yaeE 588858000391 yaeE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DL-methionine transporter permease YP_005235917.1 287077 R 588858 CDS YP_005235918.1 378448559 complement(287723..288754) 1 NC_016856.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 288754 metN 588858000392 metN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DL-methionine transporter ATP-binding subunit YP_005235918.1 287723 R 588858 CDS YP_005235919.1 378448560 288944..289510 1 NC_016856.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 289510 yaeD 588858000393 yaeD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D,D-heptose 1,7-bisphosphate phosphatase YP_005235919.1 288944 D 588858 CDS YP_005235920.1 378448561 complement(289581..289703) 1 NC_016856.1 hypothetical protein 289703 588858000394 STM14_0291 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235920.1 289581 R 588858 CDS YP_005235921.1 378448562 complement(289616..289819) 1 NC_016856.1 hypothetical protein 289819 588858000395 STM14_0292 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235921.1 289616 R 588858 CDS YP_005235922.1 378448563 291760..291876 1 NC_016856.1 hypothetical protein 291876 588858000399 STM14_0296 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235922.1 291760 D 588858 CDS YP_005235923.1 378448564 295769..296572 1 NC_016856.1 catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B 296572 dkgB 588858000403 dkgB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2,5-diketo-D-gluconate reductase B YP_005235923.1 295769 D 588858 CDS YP_005235924.1 378448565 complement(296593..297507) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73313.1); LysR family; putative transcriptional regulator 297507 yafC 588858000404 yafC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005235924.1 296593 R 588858 CDS YP_005235925.1 378448566 297612..298787 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC74729.1); putatively for chloramphenicol; putative drug efflux protein 298787 588858000405 STM14_0302 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative drug efflux protein YP_005235925.1 297612 D 588858 CDS YP_005235926.1 378448567 298940..299719 1 NC_016856.1 hypothetical protein 299719 yafD 588858000406 yafD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235926.1 298940 D 588858 CDS YP_005235927.1 378448568 299797..300567 1 NC_016856.1 similar to Escherichia coli putative biotin synthesis protein (AAC73315.1); involved in menaquinone/biotin biosynthesis; putative methyltransferase 300567 yafE 588858000407 yafE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative methyltransferase YP_005235927.1 299797 D 588858 CDS YP_005235928.1 378448569 complement(300623..301990) 1 NC_016856.1 catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall; membrane-bound lytic murein transglycosylase D 301990 dniR 588858000408 dniR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S membrane-bound lytic murein transglycosylase D YP_005235928.1 300623 R 588858 CDS YP_005235929.1 378448570 complement(302062..302817) 1 NC_016856.1 catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; hydroxyacylglutathione hydrolase 302817 gloB 588858000409 gloB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydroxyacylglutathione hydrolase YP_005235929.1 302062 R 588858 CDS YP_005235930.1 378448571 302852..303574 1 NC_016856.1 putative SAM-dependent methyltransferase 303574 yafS 588858000410 yafS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative SAM-dependent methyltransferase YP_005235930.1 302852 D 588858 CDS YP_005235931.1 378448572 complement(303571..304038) 1 NC_016856.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 304038 rnhA 588858000411 rnhA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonuclease H YP_005235931.1 303571 R 588858 CDS YP_005235932.1 378448573 304102..304833 1 NC_016856.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 304833 dnaQ 588858000412 dnaQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA polymerase III subunit epsilon YP_005235932.1 304102 D 588858 CDS YP_005235933.1 378448574 complement(304859..304966) 1 NC_016856.1 hypothetical protein 304966 588858000413 STM14_0310 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235933.1 304859 R 588858 CDS YP_005235934.1 378448575 305167..305274 1 NC_016856.1 hypothetical protein 305274 588858000415 STM14_0312 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235934.1 305167 D 588858 CDS YP_005235935.1 378448576 complement(305365..306420) 1 NC_016856.1 putative cytoplasmic protein 306420 588858000416 STM14_0313 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235935.1 305365 R 588858 CDS YP_005235936.1 378448577 complement(306431..307426) 1 NC_016856.1 putative cytoplasmic protein 307426 588858000417 STM14_0314 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235936.1 306431 R 588858 CDS YP_005235937.1 378448578 complement(307423..309306) 1 NC_016856.1 putative cytoplasmic protein 309306 588858000418 STM14_0315 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235937.1 307423 R 588858 CDS YP_005235938.1 378448579 complement(309322..309816) 1 NC_016856.1 putative cytoplasmic protein 309816 588858000419 STM14_0316 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235938.1 309322 R 588858 CDS YP_005235939.1 378448580 complement(309813..310637) 1 NC_016856.1 putative cytoplasmic protein 310637 588858000420 STM14_0317 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235939.1 309813 R 588858 CDS YP_005235940.1 378448581 complement(310624..311526) 1 NC_016856.1 putative cytoplasmic protein 311526 588858000421 STM14_0318 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235940.1 310624 R 588858 CDS YP_005235941.1 378448582 311894..314533 1 NC_016856.1 similar to Escherichia coli ATP-binding component of serine protease (AAC73969.1); similar to Yersinia clpB; putative chaperone ATPase 314533 588858000422 STM14_0319 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative chaperone ATPase YP_005235941.1 311894 D 588858 CDS YP_005235942.1 378448583 314633..315175 1 NC_016856.1 putative cytoplasmic protein 315175 588858000423 STM14_0320 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235942.1 314633 D 588858 CDS YP_005235943.1 378448584 315199..316692 1 NC_016856.1 putative cytoplasmic protein 316692 588858000424 STM14_0321 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235943.1 315199 D 588858 CDS YP_005235944.1 378448585 316755..316865 1 NC_016856.1 invasol SirA 316865 588858000425 STM14_0322 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S invasol SirA YP_005235944.1 316755 D 588858 CDS YP_005235945.1 378448586 316878..317324 1 NC_016856.1 putative cytoplasmic protein 317324 588858000426 STM14_0323 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235945.1 316878 D 588858 CDS YP_005235946.1 378448587 317578..318063 1 NC_016856.1 putative cytoplasmic protein 318063 588858000427 STM14_0324 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235946.1 317578 D 588858 CDS YP_005235947.1 378448588 318368..318853 1 NC_016856.1 putative cytoplasmic protein 318853 588858000428 STM14_0325 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235947.1 318368 D 588858 CDS YP_005235948.1 378448589 318838..319221 1 NC_016856.1 hypothetical protein 319221 588858000429 STM14_0326 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235948.1 318838 D 588858 CDS YP_005235949.1 378448590 319364..319849 1 NC_016856.1 putative cytoplasmic protein 319849 588858000430 STM14_0327 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235949.1 319364 D 588858 CDS YP_005235950.1 378448591 319916..320452 1 NC_016856.1 putative outer membrane lipoprotein 320452 588858000431 STM14_0328 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005235950.1 319916 D 588858 CDS YP_005235951.1 378448592 320456..321799 1 NC_016856.1 putative cytoplasmic protein 321799 588858000432 STM14_0329 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235951.1 320456 D 588858 CDS YP_005235952.1 378448593 321796..323100 1 NC_016856.1 similar to Escherichia coli putative outer membrane protein (AAC76576.1); OmpA family; hypothetical protein 323100 588858000433 STM14_0330 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235952.1 321796 D 588858 CDS YP_005235953.1 378448594 323105..323878 1 NC_016856.1 putative inner membrane protein 323878 588858000434 STM14_0331 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005235953.1 323105 D 588858 CDS YP_005235954.1 378448595 324081..324512 1 NC_016856.1 putative Shiga-like toxin A subunit 324512 588858000435 STM14_0332 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative Shiga-like toxin A subunit YP_005235954.1 324081 D 588858 CDS YP_005235955.1 378448596 324546..328415 1 NC_016856.1 putative inner membrane protein 328415 588858000436 STM14_0333 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005235955.1 324546 D 588858 CDS YP_005235956.1 378448597 328415..329203 1 NC_016856.1 putative cytoplasmic protein 329203 588858000437 STM14_0334 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235956.1 328415 D 588858 CDS YP_005235957.1 378448598 329200..329616 1 NC_016856.1 hypothetical protein 329616 588858000438 STM14_0335 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235957.1 329200 D 588858 CDS YP_005235958.1 378448599 329640..330161 1 NC_016856.1 putative cytoplasmic protein 330161 588858000439 STM14_0336 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235958.1 329640 D 588858 CDS YP_005235959.1 378448600 330303..330512 1 NC_016856.1 hypothetical protein 330512 588858000440 STM14_0337 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235959.1 330303 D 588858 CDS YP_005235960.1 378448601 330558..332747 1 NC_016856.1 putative cytoplasmic protein 332747 588858000441 STM14_0338 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235960.1 330558 D 588858 CDS YP_005235961.1 378448602 332771..333217 1 NC_016856.1 putative cytoplasmic protein 333217 588858000442 STM14_0339 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235961.1 332771 D 588858 CDS YP_005235962.1 378448603 333236..337330 1 NC_016856.1 similar to Escherichia coli RhsD protein in rhs element (AAC73599.1); similar to STM0292; putative RHS-like protein 337330 588858000443 STM14_0340 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative RHS-like protein YP_005235962.1 333236 D 588858 CDS YP_005235963.1 378448604 337687..338520 1 NC_016856.1 similar to Escherichia coli rhsE protein in rhs element (AAC74538.1); similar to C-terminus of STM0291; putative RHS-like protein 338520 588858000444 STM14_0341 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative RHS-like protein YP_005235963.1 337687 D 588858 CDS YP_005235964.1 378448605 338514..338960 1 NC_016856.1 putative cytoplasmic protein 338960 588858000445 STM14_0342 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235964.1 338514 D 588858 CDS YP_005235965.1 378448606 339144..339275 1 NC_016856.1 hypothetical protein 339275 588858000446 STM14_0343 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235965.1 339144 D 588858 CDS YP_005235966.1 378448607 339345..339485 1 NC_016856.1 hypothetical protein 339485 588858000447 STM14_0344 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235966.1 339345 D 588858 CDS YP_005235967.1 378448608 339523..339960 1 NC_016856.1 putative cytoplasmic protein 339960 588858000448 STM14_0345 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235967.1 339523 D 588858 CDS YP_005235968.1 378448609 complement(340013..340288) 1 NC_016856.1 hypothetical protein 340288 588858000449 STM14_0346 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235968.1 340013 R 588858 CDS YP_005235969.1 378448610 340729..341037 1 NC_016856.1 putative cytoplasmic protein 341037 588858000451 STM14_0348 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235969.1 340729 D 588858 CDS YP_005235970.1 378448611 341440..341637 1 NC_016856.1 putative transposase 341637 588858000452 STM14_0350 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transposase YP_005235970.1 341440 D 588858 CDS YP_006894085.1 410023233 341863..342144 1 NC_016856.1 hypothetical protein 342144 588858000453 STM14_0351 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_006894085.1 341863 D 588858 CDS YP_005235971.1 378448612 342894..343406 1 NC_016856.1 putative outer membrane protein 343406 safA 588858000454 safA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005235971.1 342894 D 588858 CDS YP_005235972.1 378448613 343514..344227 1 NC_016856.1 similar to Escherichia coli putative chaperone (AAC76177.1); putative fimbrial assembly chaperone 344227 safB 588858000455 safB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial assembly chaperone YP_005235972.1 343514 D 588858 CDS YP_005235973.1 378448614 344251..346761 1 NC_016856.1 similar to Escherichia coli putative outer membrane protein; export function (AAC73634.1); putative fimbrial usher 346761 safC 588858000456 safC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial usher YP_005235973.1 344251 D 588858 CDS YP_005235974.1 378448615 346783..347253 1 NC_016856.1 putative fimbrial subunit 347253 safD 588858000457 safD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial subunit YP_005235974.1 346783 D 588858 CDS YP_005235975.1 378448616 347659..348480 1 NC_016856.1 putative xylanase/chitin deacetylase 348480 ybeJ 588858000458 ybeJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative xylanase/chitin deacetylase YP_005235975.1 347659 D 588858 CDS YP_005235976.1 378448617 348560..348820 1 NC_016856.1 hypothetical protein 348820 588858000459 STM14_0357 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235976.1 348560 D 588858 CDS YP_005235977.1 378448618 349295..350242 1 NC_016856.1 SinR protein (SW:SINR_SALTY); transcriptional regulator 350242 sinR 588858000460 sinR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator YP_005235977.1 349295 D 588858 CDS YP_005235978.1 378448619 350359..350574 1 NC_016856.1 putative cytoplasmic protein 350574 588858000461 STM14_0359 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235978.1 350359 D 588858 CDS YP_005235979.1 378448620 complement(350578..351297) 1 NC_016856.1 SapA-like protein 351297 588858000462 STM14_0360 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S SapA-like protein YP_005235979.1 350578 R 588858 CDS YP_005235980.1 378448621 complement(351322..351450) 1 NC_016856.1 hypothetical protein 351450 588858000463 STM14_0361 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235980.1 351322 R 588858 CDS YP_005235981.1 378448622 complement(351628..352035) 1 NC_016856.1 similar to Shigella VirG protein; VirG-like protein 352035 588858000464 STM14_0362 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S VirG-like protein YP_005235981.1 351628 R 588858 CDS YP_005235982.1 378448623 complement(352120..352227) 1 NC_016856.1 hypothetical protein 352227 588858000465 STM14_0363 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235982.1 352120 R 588858 CDS YP_005235983.1 378448624 complement(352406..353173) 1 NC_016856.1 similar to Escherichia coli putative amidase-type enzyme (AAC73323.1); hypothetical protein 353173 yafV 588858000466 yafV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235983.1 352406 R 588858 CDS YP_005235984.1 378448625 complement(353282..355726) 1 NC_016856.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 355726 fadE 588858000467 fadE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acyl-CoA dehydrogenase YP_005235984.1 353282 R 588858 CDS YP_005235985.1 378448626 355966..356544 1 NC_016856.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 356544 gmhA 588858000468 gmhA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoheptose isomerase YP_005235985.1 355966 D 588858 CDS YP_005235986.1 378448627 356757..357524 1 NC_016856.1 similar to Escherichia coli putative amidotransferase (AAC73327.1); putative glutamine amidotransferase 357524 yafJ 588858000469 yafJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glutamine amidotransferase YP_005235986.1 356757 D 588858 CDS YP_005235987.1 378448628 complement(357495..358235) 1 NC_016856.1 hypothetical protein 358235 yafK 588858000470 yafK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235987.1 357495 R 588858 CDS YP_005235988.1 378448629 358485..359540 1 NC_016856.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 359540 dinP 588858000471 dinP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA polymerase IV YP_005235988.1 358485 D 588858 CDS YP_005235989.1 378448630 360888..361502 1 NC_016856.1 similar to release factor 1 and 2; peptide chain release factor-like protein 361502 prfH 588858000473 prfH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptide chain release factor-like protein YP_005235989.1 360888 D 588858 CDS YP_005235990.1 378448631 complement(361658..363115) 1 NC_016856.1 similar to Escherichia coli aminoacyl-histidine dipeptidase; peptidase D (AAC73341.1); aminoacyl-histidine dipeptidase 363115 pepD 588858000474 pepD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aminoacyl-histidine dipeptidase YP_005235990.1 361658 R 588858 CDS YP_005235991.1 378448632 363364..363822 1 NC_016856.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 363822 gpt 588858000475 gpt Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S xanthine-guanine phosphoribosyltransferase YP_005235991.1 363364 D 588858 CDS YP_005235992.1 378448633 363911..365155 1 NC_016856.1 forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein 365155 frsA 588858000476 frsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fermentation/respiration switch protein YP_005235992.1 363911 D 588858 CDS YP_005235993.1 378448634 365213..365614 1 NC_016856.1 involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; DNA-binding transcriptional regulator Crl 365614 crl 588858000477 crl Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator Crl YP_005235993.1 365213 D 588858 CDS YP_005235994.1 378448635 complement(365665..366717) 1 NC_016856.1 outer membrane pore protein E precursor (SW:PHOE_SALTY); outer membrane phosphoporin protein E 366717 phoE 588858000478 phoE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane phosphoporin protein E YP_005235994.1 365665 R 588858 CDS YP_005235995.1 378448636 complement(366783..366935) 1 NC_016856.1 hypothetical protein 366935 588858000479 STM14_0377 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005235995.1 366783 R 588858 CDS YP_005235996.1 378448637 367000..368103 1 NC_016856.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 368103 proB 588858000480 proB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S gamma-glutamyl kinase YP_005235996.1 367000 D 588858 CDS YP_005235997.1 378448638 368115..369365 1 NC_016856.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 369365 proA 588858000481 proA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S gamma-glutamyl phosphate reductase YP_005235997.1 368115 D 588858 CDS YP_005235998.1 378448639 complement(369882..370682) 1 NC_016856.1 similar to Escherichia coli IS3 putative transposase (AAC75150.1); contains a premature stop codon; IS3 transposase 370682 588858000483 STM14_0381 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S IS3 transposase YP_005235998.1 369882 R 588858 CDS YP_005235999.1 378448640 371424..371747 1 NC_016856.1 putative cytoplasmic protein 371747 588858000485 STM14_0383 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005235999.1 371424 D 588858 CDS YP_005236000.2 410023156 372094..373326 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC74668.1); putative permease 373326 588858000486 STM14_0384 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005236000.2 372094 D 588858 CDS YP_005236001.1 378448642 373458..374879 1 NC_016856.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 374879 588858000487 STM14_0385 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S isopropylmalate isomerase large subunit YP_005236001.1 373458 D 588858 CDS YP_005236002.1 378448643 374881..375507 1 NC_016856.1 similar to Escherichia coli 3-isopropylmalate isomerase subunit (AAC73182.1); dehydratase; subunit with LeuC; putative 3-isopropylmalate isomerase 375507 588858000488 STM14_0386 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative 3-isopropylmalate isomerase YP_005236002.1 374881 D 588858 CDS YP_005236003.1 378448644 375522..376400 1 NC_016856.1 similar to Escherichia coli putative isomerase (AAC74264.1); FAA; putative fumarylacetoacetate hydrolase 376400 588858000489 STM14_0387 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fumarylacetoacetate hydrolase YP_005236003.1 375522 D 588858 CDS YP_005236004.1 378448645 376400..377314 1 NC_016856.1 putative hydrolase/acyltransferase 377314 588858000490 STM14_0388 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrolase/acyltransferase YP_005236004.1 376400 D 588858 CDS YP_005236005.1 378448646 377348..378313 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74869.1); LysR family; putative transcriptional regulator 378313 588858000491 STM14_0389 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005236005.1 377348 D 588858 CDS YP_005236006.1 378448647 complement(378258..378530) 1 NC_016856.1 putative cytoplasmic protein 378530 588858000492 STM14_0390 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236006.1 378258 R 588858 CDS YP_005236007.1 378448648 379221..379619 1 NC_016856.1 putative outer membrane protein 379619 588858000493 STM14_0391 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005236007.1 379221 D 588858 CDS YP_005236008.1 378448649 complement(379666..380424) 1 NC_016856.1 similar to Escherichia coli periplasmic chaperone; required for type 1 fimbriae (AAC77272.1); putative fimbrial chaperone 380424 stbE 588858000494 stbE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial chaperone YP_005236008.1 379666 R 588858 CDS YP_005236009.1 378448650 complement(380390..381715) 1 NC_016856.1 putative fimbrial usher 381715 stbD 588858000495 stbD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial usher YP_005236009.1 380390 R 588858 CDS YP_005236010.1 378448651 complement(381720..384287) 1 NC_016856.1 similar to Escherichia coli outer membrane protein; export and assembly of type 1 fimbriae; interrupted (AAC77273.1); putative fimbrial usher 384287 stbC 588858000496 stbC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial usher YP_005236010.1 381720 R 588858 CDS YP_005236011.1 378448652 complement(384271..385032) 1 NC_016856.1 similar to Escherichia coli probable pilin chaperone PapD (AAC73251.1); putative fimbrial chaperone 385032 stbB 588858000497 stbB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial chaperone YP_005236011.1 384271 R 588858 CDS YP_005236012.1 378448653 complement(385094..385630) 1 NC_016856.1 similar to Escherichia coli major type 1 subunit fimbrin; pilin (AAC77270.1); putative fimbrial major subunit 385630 stbA 588858000498 stbA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial major subunit YP_005236012.1 385094 R 588858 CDS YP_005236013.1 378448654 complement(385733..385843) 1 NC_016856.1 hypothetical protein 385843 588858000499 STM14_0397 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236013.1 385733 R 588858 CDS YP_005236014.1 378448655 386264..387028 1 NC_016856.1 putative inner membrane protein 387028 588858000500 STM14_0398 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236014.1 386264 D 588858 CDS YP_005236015.1 378448656 387001..387501 1 NC_016856.1 hypothetical protein 387501 588858000501 STM14_0399 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236015.1 387001 D 588858 CDS YP_005236016.1 378448657 387801..389375 1 NC_016856.1 putative diguanylate cyclase/phosphodiesterase domain 1; hypothetical protein 389375 588858000502 STM14_0400 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236016.1 387801 D 588858 CDS YP_005236017.1 378448658 389475..390218 1 NC_016856.1 putative response regulator 390218 588858000503 STM14_0401 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative response regulator YP_005236017.1 389475 D 588858 CDS YP_005236018.1 378448659 390191..390679 1 NC_016856.1 putative inner membrane protein 390679 588858000504 STM14_0402 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236018.1 390191 D 588858 CDS YP_005236019.1 378448660 complement(390802..390939) 1 NC_016856.1 hypothetical protein 390939 588858000505 STM14_0403 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236019.1 390802 R 588858 CDS YP_005236020.1 378448661 391081..391605 1 NC_016856.1 similar to ail and ompX; putative outer membrane protein 391605 588858000506 STM14_0404 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005236020.1 391081 D 588858 CDS YP_005236021.1 378448662 391749..392390 1 NC_016856.1 putative response regulator 392390 588858000507 STM14_0405 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative response regulator YP_005236021.1 391749 D 588858 CDS YP_005236022.1 378448663 392401..392625 1 NC_016856.1 putative inner membrane protein 392625 588858000508 STM14_0406 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236022.1 392401 D 588858 CDS YP_005236023.1 378448664 392683..393042 1 NC_016856.1 putative outer membrane lipoprotein 393042 588858000509 STM14_0407 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005236023.1 392683 D 588858 CDS YP_005236024.1 378448665 complement(393112..394569) 1 NC_016856.1 similar to Escherichia coli putative resistance protein (AAC73673.1); outer membrane efflux-like protein 394569 588858000510 STM14_0408 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane efflux-like protein YP_005236024.1 393112 R 588858 CDS YP_005236025.1 378448666 complement(394586..397753) 1 NC_016856.1 similar to Escherichia coli integral transmembrane protein; acridine resistance (AAC76298.1); putative cation efflux system protein 397753 588858000511 STM14_0409 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cation efflux system protein YP_005236025.1 394586 R 588858 CDS YP_005236026.1 378448667 complement(397750..398955) 1 NC_016856.1 similar to Escherichia coli acridine efflux pump (AAC73565.1); putative cation efflux pump 398955 588858000512 STM14_0410 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cation efflux pump YP_005236026.1 397750 R 588858 CDS YP_005236027.1 378448668 399120..399233 1 NC_016856.1 hypothetical protein 399233 588858000513 STM14_0411 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236027.1 399120 D 588858 CDS YP_005236028.1 378448669 399253..401541 1 NC_016856.1 similar to Escherichia coli putative ATPase (AAC73586.1); putative cation transport ATPase 401541 588858000514 STM14_0412 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cation transport ATPase YP_005236028.1 399253 D 588858 CDS YP_005236029.1 378448670 401553..402017 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator (AAC73589.1); putative transcriptional regulator 402017 588858000515 STM14_0413 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005236029.1 401553 D 588858 CDS YP_005236030.1 378448671 402095..402289 1 NC_016856.1 putative copper chaperone 402289 588858000516 STM14_0414 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative copper chaperone YP_005236030.1 402095 D 588858 CDS YP_005236031.1 378448672 402243..402422 1 NC_016856.1 putative metal-binding transport protein 402422 588858000517 STM14_0415 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative metal-binding transport protein YP_005236031.1 402243 D 588858 CDS YP_005236032.1 378448673 402582..403835 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC77235.1); putative inner membrane protein 403835 588858000518 STM14_0416 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236032.1 402582 D 588858 CDS YP_005236033.1 378448674 404024..405982 1 NC_016856.1 type III restriction-modification system; methyltransferase (SW:T3MO_SALTY); restriction system; DNA methylase 405982 mod 588858000519 mod Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA methylase YP_005236033.1 404024 D 588858 CDS YP_005236034.1 378448675 405989..408964 1 NC_016856.1 type III restriction-modification system enzyme (SW:T3RE_SALTY); DNA helicase; DNA restriction enzyme 408964 res 588858000520 res Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA restriction enzyme YP_005236034.1 405989 D 588858 CDS YP_005236035.1 378448676 409084..409218 1 NC_016856.1 hypothetical protein 409218 588858000521 STM14_0419 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236035.1 409084 D 588858 CDS YP_005236036.1 378448677 complement(409118..409237) 1 NC_016856.1 hypothetical protein 409237 588858000522 STM14_0420 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236036.1 409118 R 588858 CDS YP_005236037.1 378448678 409241..409342 1 NC_016856.1 putative cytoplasmic protein 409342 588858000523 STM14_0421 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236037.1 409241 D 588858 CDS YP_005236038.1 378448679 409459..410862 1 NC_016856.1 similar to Escherichia coli probable third cytochrome oxidase, subunit I (AAC74063.1); cytochrome BD2 subunit I 410862 588858000524 STM14_0422 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome BD2 subunit I YP_005236038.1 409459 D 588858 CDS YP_005236039.1 378448680 410859..411869 1 NC_016856.1 similar to Escherichia coli cytochrome d terminal oxidase polypeptide subunit II (AAC73828.1); cytochrome BD2 subunit II 411869 588858000525 STM14_0423 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome BD2 subunit II YP_005236039.1 410859 D 588858 CDS YP_005236040.1 378448681 411886..412110 1 NC_016856.1 putative cytoplasmic protein 412110 588858000526 STM14_0424 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236040.1 411886 D 588858 CDS YP_005236041.1 378448682 412206..413210 1 NC_016856.1 putative XylS/AraC transcriptional activator (gi|3094022); AraC family; putative transcriptional regulator 413210 588858000527 STM14_0425 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005236041.1 412206 D 588858 CDS YP_005236042.1 378448683 413356..415464 1 NC_016856.1 ferrioxamine B receptor precursor (SW:FOXA_SALTY); ferrioxamine receptor 415464 foxA 588858000528 foxA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ferrioxamine receptor YP_005236042.1 413356 D 588858 CDS YP_005236043.1 378448684 complement(415505..416137) 1 NC_016856.1 similar to Escherichia coli putative cytochrome subunit of dehydrogenase (AAC73431.1); putative transport protein 416137 yahN 588858000529 yahN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005236043.1 415505 R 588858 CDS YP_005236044.1 378448685 416369..416644 1 NC_016856.1 hypothetical protein 416644 yahO 588858000530 yahO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236044.1 416369 D 588858 CDS YP_005236045.1 378448686 complement(416780..418405) 1 NC_016856.1 propionate catabolism operon regulatory protein (SW:PRPR_SALTY); EBP family; prp operon regulator 418405 prpR 588858000531 prpR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S prp operon regulator YP_005236045.1 416780 R 588858 CDS YP_005236046.1 378448687 418467..418640 1 NC_016856.1 hypothetical protein 418640 588858000532 STM14_0430 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236046.1 418467 D 588858 CDS YP_005236047.1 378448688 418670..419557 1 NC_016856.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 419557 prpB 588858000533 prpB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-methylisocitrate lyase YP_005236047.1 418670 D 588858 CDS YP_005236048.1 378448689 419680..420849 1 NC_016856.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 420849 prpC 588858000534 prpC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S methylcitrate synthase YP_005236048.1 419680 D 588858 CDS YP_005236049.1 378448690 420889..422340 1 NC_016856.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 422340 prpD 588858000535 prpD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-methylcitrate dehydratase YP_005236049.1 420889 D 588858 CDS YP_005236050.1 378448691 422381..424267 1 NC_016856.1 catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 424267 prpE 588858000536 prpE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S propionyl-CoA synthetase YP_005236050.1 422381 D 588858 CDS YP_005236051.1 378448692 complement(424371..425345) 1 NC_016856.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 425345 hemB 588858000537 hemB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S delta-aminolevulinic acid dehydratase YP_005236051.1 424371 R 588858 CDS YP_005236052.1 378448693 425565..425684 1 NC_016856.1 hypothetical protein 425684 588858000538 STM14_0436 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236052.1 425565 D 588858 CDS YP_005236053.1 378448694 complement(425675..425827) 1 NC_016856.1 hypothetical protein 425827 588858000539 STM14_0437 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236053.1 425675 R 588858 CDS YP_005236054.1 378448695 425858..428794 1 NC_016856.1 similar to Escherichia coli putative flagellin structural protein (AAC73477.1); similar to 3rd module of ATP-binding components of transporters; flagellar protein 428794 yaiU 588858000540 yaiU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar protein YP_005236054.1 425858 D 588858 CDS YP_005236055.1 378448696 428880..429503 1 NC_016856.1 putative DNA-binding transcriptional regulator 429503 yaiV 588858000541 yaiV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA-binding transcriptional regulator YP_005236055.1 428880 D 588858 CDS YP_005236056.1 378448697 complement(429548..430678) 1 NC_016856.1 similar to Escherichia coli putative enzyme (AAC73479.1); beta-lactamase/D-alanine carboxypeptidase 430678 ampH 588858000542 ampH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S beta-lactamase/D-alanine carboxypeptidase YP_005236056.1 429548 R 588858 CDS YP_005236057.1 378448698 complement(430751..430909) 1 NC_016856.1 hypothetical protein 430909 588858000543 STM14_0441 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236057.1 430751 R 588858 CDS YP_005236058.1 378448699 430925..431059 1 NC_016856.1 hypothetical protein 431059 588858000544 STM14_0442 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236058.1 430925 D 588858 CDS YP_005236059.1 378448700 431052..432272 1 NC_016856.1 in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; transporter 432272 sbmA 588858000545 sbmA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transporter YP_005236059.1 431052 D 588858 CDS YP_005236060.1 378448701 432287..433381 1 NC_016856.1 putative outer membrane lipoprotein 433381 yaiW 588858000546 yaiW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005236060.1 432287 D 588858 CDS YP_005236061.1 378448702 complement(433419..433727) 1 NC_016856.1 putative inner membrane protein 433727 yaiY 588858000547 yaiY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236061.1 433419 R 588858 CDS YP_005236062.1 378448703 433714..433827 1 NC_016856.1 hypothetical protein 433827 588858000548 STM14_0446 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236062.1 433714 D 588858 CDS YP_005236063.1 378448704 433995..434210 1 NC_016856.1 putative inner membrane protein 434210 yaiZ 588858000549 yaiZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236063.1 433995 D 588858 CDS YP_005236064.1 378448705 complement(434236..435330) 1 NC_016856.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 435330 ddl_1 588858000550 ddl_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-alanyl-alanine synthetase A YP_005236064.1 434236 R 588858 CDS YP_005236065.1 378448706 435408..436121 1 NC_016856.1 putative inner membrane protein 436121 588858000551 STM14_0449 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236065.1 435408 D 588858 CDS YP_005236066.1 378448707 436290..437501 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC74137.1); putative permease 437501 588858000552 STM14_0450 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005236066.1 436290 D 588858 CDS YP_005236067.1 378448708 437620..437742 1 NC_016856.1 hypothetical protein 437742 588858000553 STM14_0451 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236067.1 437620 D 588858 CDS YP_005236068.1 378448709 437792..438058 1 NC_016856.1 hypothetical protein 438058 yaiB 588858000554 yaiB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236068.1 437792 D 588858 CDS YP_005236069.1 378448710 complement(438082..438243) 1 NC_016856.1 hypothetical protein 438243 588858000555 STM14_0453 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236069.1 438082 R 588858 CDS YP_005236070.1 378448711 438410..438730 1 NC_016856.1 similar to Escherichia coli protein induced by phosphate starvation (AAC73487.1); hypothetical protein 438730 psiF 588858000556 psiF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236070.1 438410 D 588858 CDS YP_005236071.1 378448712 438822..439934 1 NC_016856.1 catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis; diguanylate cyclase AdrA 439934 yaiC 588858000557 yaiC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S diguanylate cyclase AdrA YP_005236071.1 438822 D 588858 CDS YP_005236072.1 378448713 complement(439949..440758) 1 NC_016856.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 440758 proC 588858000558 proC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyrroline-5-carboxylate reductase YP_005236072.1 439949 R 588858 CDS YP_005236073.1 378448714 440792..440941 1 NC_016856.1 hypothetical protein 440941 588858000559 STM14_0457 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236073.1 440792 D 588858 CDS YP_005236074.1 378448715 440898..441353 1 NC_016856.1 hypothetical protein 441353 yaiI 588858000560 yaiI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236074.1 440898 D 588858 CDS YP_005236075.1 378448716 441538..442083 1 NC_016856.1 type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 442083 aroL 588858000561 aroL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S shikimate kinase YP_005236075.1 441538 D 588858 CDS YP_005236076.1 378448717 442110..442301 1 NC_016856.1 hypothetical protein 442301 yaiA 588858000562 yaiA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236076.1 442110 D 588858 CDS YP_005236077.1 378448718 442552..443229 1 NC_016856.1 similar to Escherichia coli protein of aro operon; regulated by aroR (AAC73493.1); hypothetical protein 443229 aroM 588858000563 aroM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236077.1 442552 D 588858 CDS YP_005236078.1 378448719 443300..443584 1 NC_016856.1 hypothetical protein 443584 yaiE 588858000564 yaiE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236078.1 443300 D 588858 CDS YP_005236079.1 378448720 complement(443622..444533) 1 NC_016856.1 Required for efficient pilin antigenic variation; recombination associated protein 444533 rdgC 588858000565 rdgC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S recombination associated protein YP_005236079.1 443622 R 588858 CDS YP_005236080.1 378448721 complement(444556..444687) 1 NC_016856.1 hypothetical protein 444687 588858000566 STM14_0464 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236080.1 444556 R 588858 CDS YP_005236081.1 378448722 444659..445567 1 NC_016856.1 catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 445567 yajF 588858000567 yajF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fructokinase YP_005236081.1 444659 D 588858 CDS YP_005236082.1 378448723 complement(445589..446761) 1 NC_016856.1 member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; protein AraJ 446761 araJ 588858000568 araJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S protein AraJ YP_005236082.1 445589 R 588858 CDS YP_005236083.1 378448724 complement(446934..450074) 1 NC_016856.1 with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; exonuclease subunit SbcC 450074 sbcC 588858000569 sbcC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S exonuclease subunit SbcC YP_005236083.1 446934 R 588858 CDS YP_005236084.1 378448725 complement(450071..451273) 1 NC_016856.1 with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease subunit SbcD 451273 sbcD 588858000570 sbcD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S exonuclease subunit SbcD YP_005236084.1 450071 R 588858 CDS YP_005236085.1 378448726 complement(451315..451446) 1 NC_016856.1 hypothetical protein 451446 588858000571 STM14_0469 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236085.1 451315 R 588858 CDS YP_005236086.1 378448727 451488..452177 1 NC_016856.1 two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; transcriptional regulator PhoB 452177 phoB 588858000572 phoB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator PhoB YP_005236086.1 451488 D 588858 CDS YP_005236087.1 378448728 452247..453542 1 NC_016856.1 membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein 453542 phoR 588858000573 phoR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphate regulon sensor protein YP_005236087.1 452247 D 588858 CDS YP_005236088.1 378448729 complement(453755..453904) 1 NC_016856.1 hypothetical protein 453904 588858000574 STM14_0472 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236088.1 453755 R 588858 CDS YP_005236089.1 378448730 453951..455270 1 NC_016856.1 branched-chain amino acid transport system II carrier protein (SW:BRNQ_SALTY); LIVCS family; LIV-II; branched-chain amino acid transporter 455270 brnQ 588858000575 brnQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S branched-chain amino acid transporter YP_005236089.1 453951 D 588858 CDS YP_005236090.1 378448731 455345..456715 1 NC_016856.1 cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; putative proline-specific permease 456715 proY 588858000576 proY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative proline-specific permease YP_005236090.1 455345 D 588858 CDS YP_005236091.1 378448732 456877..458694 1 NC_016856.1 similar to Escherichia coli maltodextrin glucosidase (AAC73506.1); maltodextrin glucosidase 458694 malZ 588858000577 malZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S maltodextrin glucosidase YP_005236091.1 456877 D 588858 CDS YP_005236092.1 378448733 complement(458766..459368) 1 NC_016856.1 similar to Escherichia coli alkyl hydroperoxide reductase C22 subunit; detoxification of hydroperoxides (AAC73706.1); putative thiol-alkyl hydroperoxide reductase 459368 588858000578 STM14_0476 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative thiol-alkyl hydroperoxide reductase YP_005236092.1 458766 R 588858 CDS YP_005236093.1 378448734 complement(459578..460159) 1 NC_016856.1 Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; acyl carrier protein phosphodiesterase 460159 yajB 588858000579 yajB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acyl carrier protein phosphodiesterase YP_005236093.1 459578 R 588858 CDS YP_005236094.1 378448735 460253..461317 1 NC_016856.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 461317 queA 588858000580 queA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_005236094.1 460253 D 588858 CDS YP_005236095.1 378448736 461340..461450 1 NC_016856.1 DNA metabolism protein 461450 588858000581 STM14_0479 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA metabolism protein YP_005236095.1 461340 D 588858 CDS YP_005236096.1 378448737 461514..462641 1 NC_016856.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 462641 tgt 588858000582 tgt Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S queuine tRNA-ribosyltransferase YP_005236096.1 461514 D 588858 CDS YP_005236097.1 378448738 462664..462996 1 NC_016856.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 462996 yajC 588858000583 yajC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S preprotein translocase subunit YajC YP_005236097.1 462664 D 588858 CDS YP_005236098.1 378448739 463024..464871 1 NC_016856.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 464871 secD 588858000584 secD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S preprotein translocase subunit SecD YP_005236098.1 463024 D 588858 CDS YP_005236099.1 378448740 464882..465853 1 NC_016856.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 465853 secF 588858000585 secF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S preprotein translocase subunit SecF YP_005236099.1 464882 D 588858 CDS YP_005236100.1 378448741 466001..466366 1 NC_016856.1 hypothetical protein 466366 588858000586 STM14_0484 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236100.1 466001 D 588858 CDS YP_005236101.1 378448742 466392..467084 1 NC_016856.1 putative regulatory protein 467084 588858000587 STM14_0485 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005236101.1 466392 D 588858 CDS YP_005236102.1 378448743 467254..467601 1 NC_016856.1 hypothetical 12.6 kDa protein in secF-tsx intergenic region (SW:YAJD_SALTY); hypothetical protein 467601 yajD 588858000588 yajD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236102.1 467254 D 588858 CDS YP_005236103.1 378448744 467631..467846 1 NC_016856.1 hypothetical protein 467846 588858000589 STM14_0487 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236103.1 467631 D 588858 CDS YP_005236104.1 378448745 complement(468230..469198) 1 NC_016856.1 nucleoside-specific channel-forming protein TSX precursor (SW:TSX_SALTY); receptor of phage T6 and colicin K; nucleoside channel 469198 tsx 588858000591 tsx Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nucleoside channel YP_005236104.1 468230 R 588858 CDS YP_005236105.1 378448746 complement(469393..469932) 1 NC_016856.1 hypothetical protein 469932 yajI 588858000592 yajI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236105.1 469393 R 588858 CDS YP_005236106.1 378448747 469965..470111 1 NC_016856.1 hypothetical protein 470111 588858000593 STM14_0491 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236106.1 469965 D 588858 CDS YP_005236107.1 378448748 470084..470533 1 NC_016856.1 transcriptional regulator NrdR 470533 ybaD 588858000594 ybaD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator NrdR YP_005236107.1 470084 D 588858 CDS YP_005236108.1 378448749 470537..471640 1 NC_016856.1 riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 471640 ribD 588858000595 ribD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase YP_005236108.1 470537 D 588858 CDS YP_005236109.1 378448750 471729..472199 1 NC_016856.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; riboflavin synthase subunit beta 472199 ribH 588858000596 ribH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S riboflavin synthase subunit beta YP_005236109.1 471729 D 588858 CDS YP_005236110.1 378448751 472220..472639 1 NC_016856.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 472639 nusB 588858000597 nusB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcription antitermination protein NusB YP_005236110.1 472220 D 588858 CDS YP_005236111.1 378448752 472718..473695 1 NC_016856.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 473695 thiL 588858000598 thiL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiamine monophosphate kinase YP_005236111.1 472718 D 588858 CDS YP_005236112.1 378448753 473673..474188 1 NC_016856.1 hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 474188 pgpA 588858000599 pgpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphatidylglycerophosphatase A YP_005236112.1 473673 D 588858 CDS YP_005236113.1 378448754 complement(473976..474284) 1 NC_016856.1 hypothetical protein 474284 588858000600 STM14_0498 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236113.1 473976 R 588858 CDS YP_005236114.1 378448755 complement(474292..475266) 1 NC_016856.1 similar to Escherichia coli putative NAD(P)H-dependent xylose reductase (AAC73522.1); K+ channel protein; putative oxidoreductase 475266 yajO 588858000601 yajO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative oxidoreductase YP_005236114.1 474292 R 588858 CDS YP_005236115.1 378448756 complement(475323..477185) 1 NC_016856.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 477185 dxs 588858000602 dxs Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 1-deoxy-D-xylulose-5-phosphate synthase YP_005236115.1 475323 R 588858 CDS YP_005236116.1 378448757 complement(477209..478108) 1 NC_016856.1 similar to Escherichia coli geranyltranstransferase; farnesyldiphosphate synthase (AAC73524.1); geranyltranstransferase 478108 ispA 588858000603 ispA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S geranyltranstransferase YP_005236116.1 477209 R 588858 CDS YP_005236117.1 378448758 complement(478109..478351) 1 NC_016856.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 478351 xseB 588858000604 xseB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S exodeoxyribonuclease VII small subunit YP_005236117.1 478109 R 588858 CDS YP_005236118.1 378448759 478561..480009 1 NC_016856.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 480009 thiI 588858000605 thiI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiamine biosynthesis protein ThiI YP_005236118.1 478561 D 588858 CDS YP_005236119.1 378448760 complement(480053..480850) 1 NC_016856.1 probable membrane component of 2-aminoethylphosphonate transporter PhnV (gi|11354255); 2-aminoethylphosphonate transporter 480850 phnV 588858000606 phnV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-aminoethylphosphonate transporter YP_005236119.1 480053 R 588858 CDS YP_005236120.1 378448761 complement(480853..481713) 1 NC_016856.1 probable membrane component of 2-aminoethylphosphonate transporter PhnU (gi|11354254); 2-aminoethylphosphonate transporter 481713 phnU 588858000607 phnU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-aminoethylphosphonate transporter YP_005236120.1 480853 R 588858 CDS YP_005236121.1 378448762 complement(481716..482825) 1 NC_016856.1 probable ATPase component of 2-aminoethylphosphonate transporter PhnT (gi|11354253); 2-aminoethylphosphonate transporter 482825 phnT 588858000608 phnT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-aminoethylphosphonate transporter YP_005236121.1 481716 R 588858 CDS YP_005236122.1 378448763 complement(482831..483844) 1 NC_016856.1 probable periplasmic binding-protein of the2-aminoethylphosphonate transporter phnS (gi|11354256); 2-aminoethylphosphonate transporter 483844 phnS 588858000609 phnS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-aminoethylphosphonate transporter YP_005236122.1 482831 R 588858 CDS YP_005236123.1 378448764 complement(484042..484761) 1 NC_016856.1 probable repressor protein of GntR family PhnR (gi|11354257); 2-aminoethylphosphonate transport protein 484761 phnR 588858000610 phnR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-aminoethylphosphonate transport protein YP_005236123.1 484042 R 588858 CDS YP_005236124.1 378448765 complement(484792..484902) 1 NC_016856.1 hypothetical protein 484902 588858000611 STM14_0509 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236124.1 484792 R 588858 CDS YP_005236125.1 378448766 484901..486004 1 NC_016856.1 catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 486004 phnW 588858000612 phnW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-aminoethylphosphonate--pyruvate transaminase YP_005236125.1 484901 D 588858 CDS YP_005236126.1 378448767 486011..486823 1 NC_016856.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 486823 phnX 588858000613 phnX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphonoacetaldehyde hydrolase YP_005236126.1 486011 D 588858 CDS YP_005236127.1 378448768 complement(486920..487510) 1 NC_016856.1 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme (SW:THIJ_SALTY); hypothetical protein 487510 thiJ 588858000614 thiJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236127.1 486920 R 588858 CDS YP_005236128.1 378448769 complement(487473..488384) 1 NC_016856.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 488384 apbA 588858000615 apbA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-dehydropantoate 2-reductase YP_005236128.1 487473 R 588858 CDS YP_005236129.1 378448770 488510..489001 1 NC_016856.1 nucleotide-binding protein 489001 yajQ 588858000616 yajQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nucleotide-binding protein YP_005236129.1 488510 D 588858 CDS YP_005236130.1 378448771 complement(489048..490412) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC73530.1); MFS family; putative transport protein 490412 yajR 588858000617 yajR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005236130.1 489048 R 588858 CDS YP_005236131.1 378448772 490949..492460 1 NC_016856.1 hypothetical protein 492460 588858000619 STM14_0517 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236131.1 490949 D 588858 CDS YP_005236132.1 378448773 492472..493965 1 NC_016856.1 TPR repeat; hypothetical protein 493965 588858000620 STM14_0518 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236132.1 492472 D 588858 CDS YP_005236133.1 378448774 complement(494047..494937) 1 NC_016856.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 494937 cyoE 588858000621 cyoE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S protoheme IX farnesyltransferase YP_005236133.1 494047 R 588858 CDS YP_005236134.1 378448775 complement(494949..495278) 1 NC_016856.1 similar to Escherichia coli cytochrome o ubiquinol oxidase subunit IV (AAC73532.1); cytochrome o ubiquinol oxidase subunit IV 495278 cyoD 588858000622 cyoD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome o ubiquinol oxidase subunit IV YP_005236134.1 494949 R 588858 CDS YP_005236135.1 378448776 complement(495278..495892) 1 NC_016856.1 similar to Escherichia coli cytochrome o ubiquinol oxidase subunit III (AAC73533.1); cytochrome o ubiquinol oxidase subunit III 495892 cyoC 588858000623 cyoC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome o ubiquinol oxidase subunit III YP_005236135.1 495278 R 588858 CDS YP_005236136.1 378448777 complement(495882..497873) 1 NC_016856.1 similar to Escherichia coli cytochrome o ubiquinol oxidase subunit I (AAC73534.1); cytochrome o ubiquinol oxidase subunit I 497873 cyoB 588858000624 cyoB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome o ubiquinol oxidase subunit I YP_005236136.1 495882 R 588858 CDS YP_005236137.1 378448778 complement(497884..498840) 1 NC_016856.1 similar to Escherichia coli cytochrome o ubiquinol oxidase subunit II (AAC73535.1); cytochrome o ubiquinol oxidase subunit II 498840 cyoA 588858000625 cyoA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome o ubiquinol oxidase subunit II YP_005236137.1 497884 R 588858 CDS YP_005236138.1 378448779 complement(499293..500768) 1 NC_016856.1 in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; muropeptide transporter 500768 ampG 588858000626 ampG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S muropeptide transporter YP_005236138.1 499293 R 588858 CDS YP_005236139.1 378448780 complement(500812..501390) 1 NC_016856.1 similar to Escherichia coli putative polymerase/proteinase (AAC73537.1); hypothetical protein 501390 yajG 588858000627 yajG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236139.1 500812 R 588858 CDS YP_005236140.1 378448781 501468..501653 1 NC_016856.1 hypothetical protein 501653 588858000628 STM14_0526 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236140.1 501468 D 588858 CDS YP_005236141.1 378448782 501694..502011 1 NC_016856.1 positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress; transcriptional regulator BolA 502011 bolA 588858000629 bolA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator BolA YP_005236141.1 501694 D 588858 CDS YP_005236142.1 378448783 complement(502053..502166) 1 NC_016856.1 hypothetical protein 502166 588858000630 STM14_0528 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236142.1 502053 R 588858 CDS YP_005236143.1 378448784 502358..503656 1 NC_016856.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 503656 tig 588858000631 tig Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S trigger factor YP_005236143.1 502358 D 588858 CDS YP_005236144.1 378448785 503903..504526 1 NC_016856.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 504526 clpP 588858000632 clpP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-dependent Clp protease proteolytic subunit YP_005236144.1 503903 D 588858 CDS YP_005236145.1 378448786 504670..504774 1 NC_016856.1 hypothetical protein 504774 588858000633 STM14_0531 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236145.1 504670 D 588858 CDS YP_005236146.1 378448787 504778..506049 1 NC_016856.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit 506049 clpX 588858000634 clpX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-dependent protease ATP-binding subunit YP_005236146.1 504778 D 588858 CDS YP_005236147.1 378448788 506235..508589 1 NC_016856.1 similar to Escherichia coli ATP-dependent protease La; heat shock K-protein (AAC73542.1); cleaves RcsA and SulA; heat shock K-protein; DNA binding activity; DNA-binding ATP-dependent protease La 508589 lon 588858000635 lon Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding ATP-dependent protease La YP_005236147.1 506235 D 588858 CDS YP_005236148.1 378448789 508798..509070 1 NC_016856.1 histone-like DNA-binding protein; transcriptional regulator HU subunit beta 509070 hupB 588858000636 hupB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator HU subunit beta YP_005236148.1 508798 D 588858 CDS YP_005236149.1 378448790 509361..511232 1 NC_016856.1 similar to Escherichia coli putative protease maturation protein (AAC73544.1); peptidyl-prolyl cis-trans isomerase 511232 cypD 588858000637 cypD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptidyl-prolyl cis-trans isomerase YP_005236149.1 509361 D 588858 CDS YP_005236150.1 378448791 complement(511028..511390) 1 NC_016856.1 hypothetical protein 511390 588858000638 STM14_0536 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236150.1 511028 R 588858 CDS YP_005236151.1 378448792 511382..511756 1 NC_016856.1 similar to DNA-binding proteins; putative DNA uptake protein 511756 ybaV 588858000639 ybaV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA uptake protein YP_005236151.1 511382 D 588858 CDS YP_005236152.1 378448793 511860..512258 1 NC_016856.1 putative esterase 512258 ybaW 588858000640 ybaW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative esterase YP_005236152.1 511860 D 588858 CDS YP_005236153.1 378448794 complement(512364..513059) 1 NC_016856.1 YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC 513059 ybaX 588858000641 ybaX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S queuosine biosynthesis protein QueC YP_005236153.1 512364 R 588858 CDS YP_005236154.1 378448795 complement(513124..514824) 1 NC_016856.1 putative ABC transporter periplasmic binding protein 514824 ybaE 588858000642 ybaE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter periplasmic binding protein YP_005236154.1 513124 R 588858 CDS YP_005236155.1 378448796 514925..515743 1 NC_016856.1 putative hydrolase 515743 cof 588858000643 cof Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrolase YP_005236155.1 514925 D 588858 CDS YP_005236156.1 378448797 complement(515792..516847) 1 NC_016856.1 similar to Escherichia coli cysteine synthase B; O-acetylserine sulfhydrolase B (AAC75474.1); putative cysteine synthase/cystathionine beta-synthase 516847 588858000644 STM14_0542 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cysteine synthase/cystathionine beta-synthase YP_005236156.1 515792 R 588858 CDS YP_005236157.1 378448798 516834..517418 1 NC_016856.1 similar to Escherichia coli putative LRP-like transcriptional regulator (AAC73550.1); AsnC family; putative transcriptional regulator 517418 ybaO 588858000645 ybaO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005236157.1 516834 D 588858 CDS YP_005236158.1 378448799 517459..519231 1 NC_016856.1 similar to Escherichia coli ATP-binding component of a transport system (AAC73551.1); putative ABC superfamily transporter; putative multidrug transporter membrane\ATP-binding protein 519231 mdlA 588858000646 mdlA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative multidrug transporter membrane\ATP-binding protein YP_005236158.1 517459 D 588858 CDS YP_005236159.1 378448800 519224..521005 1 NC_016856.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC73552.1); putative ABC superfamily; putative multidrug transporter membrane\ATP-binding protein 521005 mdlB 588858000647 mdlB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative multidrug transporter membrane\ATP-binding protein YP_005236159.1 519224 D 588858 CDS YP_005236160.1 378448801 521218..521556 1 NC_016856.1 indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.; nitrogen regulatory protein P-II 2 521556 glnK 588858000648 glnK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrogen regulatory protein P-II 2 YP_005236160.1 521218 D 588858 CDS YP_005236161.1 378448802 521588..522874 1 NC_016856.1 similar to Escherichia coli probable ammonium transporter (AAC73554.1); Amt family; ammonium transporter 522874 amtB 588858000649 amtB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ammonium transporter YP_005236161.1 521588 D 588858 CDS YP_005236162.1 378448803 complement(522974..523834) 1 NC_016856.1 similar to Escherichia coli acyl-CoA thioesterase II (AAC73555.1); acyl-CoA thioesterase II 523834 tesB 588858000650 tesB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acyl-CoA thioesterase II YP_005236162.1 522974 R 588858 CDS YP_005236163.1 378448804 524049..524618 1 NC_016856.1 similar to Escherichia coli glycoprotein/polysaccharide metabolism (AAC73556.1); hypothetical protein 524618 ybaY 588858000651 ybaY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236163.1 524049 D 588858 CDS YP_005236164.1 378448805 complement(524651..525040) 1 NC_016856.1 putative methyltransferase 525040 ybaZ 588858000652 ybaZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative methyltransferase YP_005236164.1 524651 R 588858 CDS YP_005236165.1 378448806 complement(525271..526821) 1 NC_016856.1 putative diguanylate cyclase/phosphodiesterase domain 2; hypothetical protein 526821 ylaB 588858000654 ylaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236165.1 525271 R 588858 CDS YP_005236166.1 378448807 527046..527306 1 NC_016856.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 527306 rpmE2 588858000655 rpmE2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L31 YP_005236166.1 527046 D 588858 CDS YP_005236167.1 378448808 527312..527452 1 NC_016856.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 527452 rpmJ_1 588858000656 rpmJ_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L36 YP_005236167.1 527312 D 588858 CDS YP_005236168.1 378448809 complement(527508..527978) 1 NC_016856.1 putative inner membrane protein 527978 ylaC 588858000657 ylaC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236168.1 527508 R 588858 CDS YP_005236169.1 378448810 complement(528095..528646) 1 NC_016856.1 similar to Escherichia coli putative transferase (AAC73561.1); maltose O-acetyltransferase 528646 maa 588858000658 maa Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S maltose O-acetyltransferase YP_005236169.1 528095 R 588858 CDS YP_005236170.1 378448811 complement(528825..529043) 1 NC_016856.1 with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; hemolysin expression-modulating protein 529043 hha 588858000659 hha Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hemolysin expression-modulating protein YP_005236170.1 528825 R 588858 CDS YP_005236171.1 378448812 complement(529071..529445) 1 NC_016856.1 hypothetical protein 529445 ybaJ 588858000660 ybaJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236171.1 529071 R 588858 CDS YP_005236172.1 378448813 complement(529941..533090) 1 NC_016856.1 similar to Escherichia coli acridine efflux pump (AAC73564.1); RND family; acridine efflux pump 533090 acrB 588858000661 acrB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acridine efflux pump YP_005236172.1 529941 R 588858 CDS YP_005236173.1 378448814 complement(533113..534306) 1 NC_016856.1 similar to Escherichia coli acridine efflux pump (AAC73565.1); acridine efflux pump 534306 acrA 588858000662 acrA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acridine efflux pump YP_005236173.1 533113 R 588858 CDS YP_005236174.1 378448815 534448..535101 1 NC_016856.1 regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; DNA-binding transcriptional repressor AcrR 535101 acrR 588858000663 acrR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional repressor AcrR YP_005236174.1 534448 D 588858 CDS YP_005236175.1 378448816 complement(535085..535210) 1 NC_016856.1 hypothetical protein 535210 588858000664 STM14_0562 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236175.1 535085 R 588858 CDS YP_005236176.1 378448817 535220..538582 1 NC_016856.1 small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 538582 aefA 588858000665 aefA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S potassium efflux protein KefA YP_005236176.1 535220 D 588858 CDS YP_005236177.1 378448818 complement(538624..539559) 1 NC_016856.1 putative transposase 539559 588858000666 STM14_0564 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transposase YP_005236177.1 538624 R 588858 CDS YP_005236178.1 378448819 complement(539629..539796) 1 NC_016856.1 hypothetical protein 539796 ybaM 588858000667 ybaM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236178.1 539629 R 588858 CDS YP_005236179.1 378448820 complement(539810..540325) 1 NC_016856.1 PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks; primosomal replication protein N'' 540325 priC 588858000668 priC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S primosomal replication protein N'' YP_005236179.1 539810 R 588858 CDS YP_005236180.1 378448821 540406..540783 1 NC_016856.1 similar to Escherichia coli putative gene 58 (AAC73570.1); hypothetical protein 540783 ybaN 588858000669 ybaN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236180.1 540406 D 588858 CDS YP_005236181.1 378448822 540936..541487 1 NC_016856.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 541487 apt 588858000670 apt Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S adenine phosphoribosyltransferase YP_005236181.1 540936 D 588858 CDS YP_005236182.1 378448823 541601..543529 1 NC_016856.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 543529 dnaX 588858000671 dnaX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA polymerase III subunits gamma and tau YP_005236182.1 541601 D 588858 CDS YP_005236183.1 378448824 543575..543904 1 NC_016856.1 hypothetical protein 543904 ybaB 588858000672 ybaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236183.1 543575 D 588858 CDS YP_005236184.1 378448825 543904..544509 1 NC_016856.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 544509 recR 588858000673 recR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S recombination protein RecR YP_005236184.1 543904 D 588858 CDS YP_005236185.1 378448826 544596..546494 1 NC_016856.1 molecular chaperone; heat shock protein 90 546494 htpG 588858000674 htpG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S heat shock protein 90 YP_005236185.1 544596 D 588858 CDS YP_005236186.1 378448827 complement(546597..546818) 1 NC_016856.1 hypothetical protein 546818 588858000675 STM14_0573 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236186.1 546597 R 588858 CDS YP_005236187.1 378448828 546735..547379 1 NC_016856.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 547379 adk 588858000676 adk Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S adenylate kinase YP_005236187.1 546735 D 588858 CDS YP_005236188.1 378448829 547392..547598 1 NC_016856.1 hypothetical protein 547598 588858000677 STM14_0575 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236188.1 547392 D 588858 CDS YP_005236189.1 378448830 547608..548570 1 NC_016856.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 548570 hemH 588858000678 hemH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ferrochelatase YP_005236189.1 547608 D 588858 CDS YP_005236190.2 410023157 complement(548567..549538) 1 NC_016856.1 similar to Escherichia coli putative lipase (AAC73578.1); acetyl esterase 549538 aes 588858000679 aes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acetyl esterase YP_005236190.2 548567 R 588858 CDS YP_005236191.1 378448832 549691..550995 1 NC_016856.1 similar to Escherichia coli inosine-guanosine kinase (AAC73579.1); inosine-guanosine kinase 550995 gsk 588858000680 gsk Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S inosine-guanosine kinase YP_005236191.1 549691 D 588858 CDS YP_005236192.1 378448833 complement(551044..552720) 1 NC_016856.1 YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; putative cation:proton antiport protein 552720 ybaL 588858000681 ybaL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cation:proton antiport protein YP_005236192.1 551044 R 588858 CDS YP_005236193.1 378448834 552798..552923 1 NC_016856.1 hypothetical protein 552923 588858000682 STM14_0580 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236193.1 552798 D 588858 CDS YP_005236194.1 378448835 complement(552935..554155) 1 NC_016856.1 similar to Escherichia coli fosmidomycin resistance protein (AAC73581.1); MFS family; putative transport protein 554155 fsr 588858000683 fsr Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005236194.1 552935 R 588858 CDS YP_005236195.1 378448836 554328..555980 1 NC_016856.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic 555980 ushA 588858000684 ushA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic YP_005236195.1 554328 D 588858 CDS YP_005236196.1 378448837 complement(556097..556576) 1 NC_016856.1 protein YbaK (SW:YBAK_SALTY); hypothetical protein 556576 ybaK 588858000685 ybaK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236196.1 556097 R 588858 CDS YP_005236197.1 378448838 complement(556778..557572) 1 NC_016856.1 similar to Escherichia coli putative ligase (AAC73584.1); putative cytoplasmic protein 557572 ybaP 588858000686 ybaP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236197.1 556778 R 588858 CDS YP_005236198.1 378448839 complement(557658..558485) 1 NC_016856.1 hypothetical protein 558485 588858000687 STM14_0585 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236198.1 557658 R 588858 CDS YP_005236199.1 378448840 complement(558639..561140) 1 NC_016856.1 similar to Escherichia coli putative ATPase (AAC73586.1); copper exporting ATPase 561140 copA 588858000688 copA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S copper exporting ATPase YP_005236199.1 558639 R 588858 CDS YP_005236200.1 378448841 561250..561666 1 NC_016856.1 activator of copper-responsive regulon genes; DNA-binding transcriptional regulator CueR 561666 cueR 588858000689 cueR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator CueR YP_005236200.1 561250 D 588858 CDS YP_005236201.1 378448842 complement(561667..562119) 1 NC_016856.1 implicated in regulation of membrane protease activity; hypothetical protein 562119 ybbJ 588858000690 ybbJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236201.1 561667 R 588858 CDS YP_005236202.1 378448843 complement(562116..563033) 1 NC_016856.1 similar to Escherichia coli putative protease (AAC73591.1); putative inner membrane protein 563033 ybbK 588858000691 ybbK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236202.1 562116 R 588858 CDS YP_005236203.1 378448844 563180..563857 1 NC_016856.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC73592.1); putative ABC transporter ATP-binding protein YbbL 563857 ybbL 588858000692 ybbL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter ATP-binding protein YbbL YP_005236203.1 563180 D 588858 CDS YP_005236204.1 378448845 563844..564623 1 NC_016856.1 similar to Escherichia coli putative metal resistance protein (AAC73593.1); YbbM family; putative transport protein 564623 ybbM 588858000693 ybbM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005236204.1 563844 D 588858 CDS YP_005236205.1 378448846 complement(564709..565563) 1 NC_016856.1 similar to Escherichia coli putative thioredoxin-like protein (AAC73594.1); putative thioredoxin protein 565563 ybbN 588858000694 ybbN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative thioredoxin protein YP_005236205.1 564709 R 588858 CDS YP_005236206.1 378448847 complement(565623..566393) 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC73595.1); short chain dehydrogenase 566393 ybbO 588858000695 ybbO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S short chain dehydrogenase YP_005236206.1 565623 R 588858 CDS YP_005236207.1 378448848 complement(566548..567162) 1 NC_016856.1 similar to Escherichia coli acyl-CoA thioesterase I; also functions as protease I (AAC73596.1); lysophospholipaseL(I); multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 567162 tesA 588858000696 tesA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 YP_005236207.1 566548 R 588858 CDS YP_005236208.1 378448849 567133..567819 1 NC_016856.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC73597.1); putative ABC superfamily ATP-binding protein; putative ABC transporter ATP-binding protein YbbA 567819 ybbA 588858000697 ybbA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter ATP-binding protein YbbA YP_005236208.1 567133 D 588858 CDS YP_005236209.1 378448850 567816..570230 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC73598.1); putative inner membrane protein 570230 ybbP 588858000698 ybbP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236209.1 567816 D 588858 CDS YP_005236210.1 378448851 570227..570331 1 NC_016856.1 hypothetical protein 570331 588858000699 STM14_0597 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236210.1 570227 D 588858 CDS YP_005236211.1 378448852 570416..571549 1 NC_016856.1 putative outer membrane protein 571549 588858000700 STM14_0598 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005236211.1 570416 D 588858 CDS YP_005236212.1 378448853 complement(571546..571650) 1 NC_016856.1 hypothetical protein 571650 588858000701 STM14_0599 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236212.1 571546 R 588858 CDS YP_005236213.1 378448854 571806..572636 1 NC_016856.1 similar to Escherichia coli putative lipoprotein (AAC73308.1); cell division protein; ABC transporter ATP-binding protein 572636 sfbA 588858000702 sfbA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ABC transporter ATP-binding protein YP_005236213.1 571806 D 588858 CDS YP_005236214.1 378448855 572673..573689 1 NC_016856.1 similar to Escherichia coli ATP-binding component of a transporter (AAC73310.1); cell division protein; ABC transporter ATP-binding protein 573689 sfbB 588858000703 sfbB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ABC transporter ATP-binding protein YP_005236214.1 572673 D 588858 CDS YP_005236215.1 378448856 573682..574341 1 NC_016856.1 similar to Escherichia coli putative transport system permease protein (AAC73309.1); binding-protein-dependent; putative ABC transporter permease 574341 sfbC 588858000704 sfbC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter permease YP_005236215.1 573682 D 588858 CDS YP_005236216.1 378448857 complement(574380..575474) 1 NC_016856.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 575474 ybbB 588858000705 ybbB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tRNA 2-selenouridine synthase YP_005236216.1 574380 R 588858 CDS YP_005236217.1 378448858 complement(575544..576470) 1 NC_016856.1 activator of the allDC-ylbA operon involved in allantoin utilization; DNA-binding transcriptional activator AllS 576470 ybbS 588858000706 ybbS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional activator AllS YP_005236217.1 575544 R 588858 CDS YP_005236218.1 378448859 576697..577179 1 NC_016856.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 577179 allA 588858000707 allA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ureidoglycolate hydrolase YP_005236218.1 576697 D 588858 CDS YP_005236219.1 378448860 577258..578076 1 NC_016856.1 regulates operons involved in the utilization of allantoin; DNA-binding transcriptional repressor AllR 578076 allR 588858000708 allR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional repressor AllR YP_005236219.1 577258 D 588858 CDS YP_005236220.1 378448861 578161..579942 1 NC_016856.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 579942 gcl 588858000709 gcl Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glyoxylate carboligase YP_005236220.1 578161 D 588858 CDS YP_005236221.1 378448862 579955..580731 1 NC_016856.1 similar to Escherichia coli glyoxylate-induced protein (AAC73610.1); hydroxypyruvate isomerase 580731 gip 588858000710 gip Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydroxypyruvate isomerase YP_005236221.1 579955 D 588858 CDS YP_005236222.1 378448863 580832..581710 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC73611.1); tartronic semialdehyde reductase 581710 glxR 588858000711 glxR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tartronic semialdehyde reductase YP_005236222.1 580832 D 588858 CDS YP_005236223.1 378448864 581776..583023 1 NC_016856.1 similar to Escherichia coli putative transport protein; cryptic; joins former yjiZ and yjjL (AAC77312.1); putative permease 583023 588858000712 STM14_0610 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005236223.1 581776 D 588858 CDS YP_005236224.1 378448865 583099..583353 1 NC_016856.1 putative cytoplasmic protein 583353 ybbV 588858000713 ybbV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236224.1 583099 D 588858 CDS YP_005236225.2 410023158 583119..584573 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC73613.1); NCS1 family; allantoin permease 584573 allP 588858000714 allP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S allantoin permease YP_005236225.2 583119 D 588858 CDS YP_005236226.1 378448867 584652..586013 1 NC_016856.1 Plays a crucial role on both purine and pyrimidine metabolism; allantoinase 586013 allB 588858000715 allB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S allantoinase YP_005236226.1 584652 D 588858 CDS YP_005236227.1 378448868 586072..587370 1 NC_016856.1 similar to Escherichia coli putative transport (AAC73615.1); putative purine permease YbbY 587370 ybbY 588858000716 ybbY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative purine permease YbbY YP_005236227.1 586072 D 588858 CDS YP_005236228.1 378448869 587393..588541 1 NC_016856.1 glycerate kinase 588541 glxK 588858000717 glxK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycerate kinase YP_005236228.1 587393 D 588858 CDS YP_005236229.1 378448870 complement(588621..589406) 1 NC_016856.1 hypothetical protein 589406 ylbA 588858000718 ylbA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236229.1 588621 R 588858 CDS YP_005236230.1 378448871 complement(589417..590652) 1 NC_016856.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 590652 allC 588858000719 allC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S allantoate amidohydrolase YP_005236230.1 589417 R 588858 CDS YP_005236231.1 378448872 complement(590674..591723) 1 NC_016856.1 similar to Escherichia coli putative malate dehydrogenase (AAC73619.1); ureidoglycolate dehydrogenase 591723 allD 588858000720 allD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ureidoglycolate dehydrogenase YP_005236231.1 590674 R 588858 CDS YP_005236232.1 378448873 592054..593718 1 NC_016856.1 multicopy suppressor of dominant negative ftsH mutations; membrane protein FdrA 593718 fdrA 588858000721 fdrA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S membrane protein FdrA YP_005236232.1 592054 D 588858 CDS YP_005236233.1 378448874 593728..594987 1 NC_016856.1 putative cytoplasmic protein 594987 ylbE 588858000722 ylbE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236233.1 593728 D 588858 CDS YP_005236234.1 378448875 594999..595808 1 NC_016856.1 similar to Escherichia coli putative carboxylase (AAC73622.1); putative cytoplasmic protein 595808 ylbF 588858000723 ylbF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236234.1 594999 D 588858 CDS YP_005236235.1 378448876 595812..596705 1 NC_016856.1 forms a homodimer; may be used to synthesize carbomyl phosphate from ATP and carbamate; carbamate kinase 596705 arcC 588858000724 arcC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S carbamate kinase YP_005236235.1 595812 D 588858 CDS YP_005236236.1 378448877 complement(596746..597813) 1 NC_016856.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 597813 purK 588858000725 purK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoribosylaminoimidazole carboxylase ATPase subunit YP_005236236.1 596746 R 588858 CDS YP_005236237.1 378448878 complement(597810..598319) 1 NC_016856.1 Catalyzes a step in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase catalytic subunit 598319 purE 588858000726 purE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoribosylaminoimidazole carboxylase catalytic subunit YP_005236237.1 597810 R 588858 CDS YP_005236238.1 378448879 complement(598437..599159) 1 NC_016856.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 599159 lpxH 588858000727 lpxH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UDP-2,3-diacylglucosamine hydrolase YP_005236238.1 598437 R 588858 CDS YP_005236239.1 378448880 complement(599162..599656) 1 NC_016856.1 similar to Escherichia coli peptidyl-prolyl cis-trans isomerase B; rotamase B (AAC73627.1); peptidyl-prolyl cis-trans isomerase B 599656 ppiB 588858000728 ppiB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptidyl-prolyl cis-trans isomerase B YP_005236239.1 599162 R 588858 CDS YP_005236240.1 378448881 599829..601214 1 NC_016856.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 601214 cysS 588858000729 cysS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cysteinyl-tRNA synthetase YP_005236240.1 599829 D 588858 CDS YP_005236241.1 378448882 complement(601258..602082) 1 NC_016856.1 putative outer membrane protein 602082 588858000730 STM14_0628 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005236241.1 601258 R 588858 CDS YP_005236242.1 378448883 complement(602079..602516) 1 NC_016856.1 putative inner membrane protein 602516 588858000731 STM14_0629 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236242.1 602079 R 588858 CDS YP_005236243.1 378448884 complement(602509..603054) 1 NC_016856.1 putative membrane-bound metal-dependent hydrolase 603054 ybcI 588858000732 ybcI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative membrane-bound metal-dependent hydrolase YP_005236243.1 602509 R 588858 CDS YP_005236244.1 378448885 complement(603182..603394) 1 NC_016856.1 hypothetical protein 603394 ybcJ 588858000733 ybcJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236244.1 603182 R 588858 CDS YP_005236245.1 378448886 complement(603396..604262) 1 NC_016856.1 similar to Escherichia coli 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase (AAC73631.1); bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 604262 folD 588858000734 folD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_005236245.1 603396 R 588858 CDS YP_005236246.1 378448887 complement(604316..604444) 1 NC_016856.1 hypothetical protein 604444 588858000735 STM14_0633 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236246.1 604316 R 588858 CDS YP_005236247.1 378448888 604400..604555 1 NC_016856.1 hypothetical protein 604555 588858000736 STM14_0634 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236247.1 604400 D 588858 CDS YP_005236248.1 378448889 604824..605366 1 NC_016856.1 type-1 fimbrial protein; A chain precursor; type-1A pilin (SW:FM1A_SALTY); major type 1 subunit; fimbrin 605366 fimA 588858000737 fimA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fimbrin YP_005236248.1 604824 D 588858 CDS YP_005236249.1 378448890 605442..605975 1 NC_016856.1 fimbrin-like protein FimI (SW:FIMI_SALTY); fimbrial protein 605975 fimI 588858000738 fimI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fimbrial protein YP_005236249.1 605442 D 588858 CDS YP_005236250.1 378448891 606019..606711 1 NC_016856.1 chaperone protein FimC precursor (SW:FIMC_SALTY); required for type 1 fimbriae; periplasmic chaperone 606711 fimC 588858000739 fimC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S periplasmic chaperone YP_005236250.1 606019 D 588858 CDS YP_005236251.1 378448892 606742..609354 1 NC_016856.1 outer membrane usher protein FimD precursor (SW:FIMD_SALTY); outer membrane usher protein 609354 fimD 588858000740 fimD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane usher protein YP_005236251.1 606742 D 588858 CDS YP_005236252.1 378448893 609369..610376 1 NC_016856.1 FIMH protein precursor (SW:FIMH_SALTY); minor fimbrial subunit 610376 fimH 588858000741 fimH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S minor fimbrial subunit YP_005236252.1 609369 D 588858 CDS YP_005236253.1 378448894 610386..610904 1 NC_016856.1 fimbrial-like protein FimF precursor (SW:FIMF_SALTY); putative fimbrial protein 610904 fimF 588858000742 fimF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial protein YP_005236253.1 610386 D 588858 CDS YP_005236254.1 378448895 complement(610950..611582) 1 NC_016856.1 activates the production of the major fimbrae protein FimA; transcriptional regulator FimZ 611582 fimZ 588858000743 fimZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator FimZ YP_005236254.1 610950 R 588858 CDS YP_005236255.1 378448896 complement(612186..612908) 1 NC_016856.1 fimbriae Y protein (SW:FIMY_SALTY); putative regulatory protein 612908 fimY 588858000744 fimY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005236255.1 612186 R 588858 CDS YP_005236256.1 378448897 complement(612927..613238) 1 NC_016856.1 putative diguanylate cyclase/phosphodiesterase domain 0; hypothetical protein 613238 588858000745 STM14_0643 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236256.1 612927 R 588858 CDS YP_005236257.1 378448898 complement(613400..613996) 1 NC_016856.1 fimbriae W protein (SW:FIMW_SALTY); putative fimbrial protein 613996 fimW 588858000746 fimW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial protein YP_005236257.1 613400 R 588858 CDS YP_005236258.1 378448899 614019..614189 1 NC_016856.1 hypothetical protein 614189 588858000747 STM14_0645 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236258.1 614019 D 588858 CDS YP_005236259.1 378448900 complement(614287..614475) 1 NC_016856.1 similar to Escherichia coli prophage DLP12 integrase (AAC73638.1); integrase 614475 588858000749 STM14_0647 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S integrase YP_005236259.1 614287 R 588858 CDS YP_005236260.1 378448901 615283..615441 1 NC_016856.1 hypothetical protein 615441 588858000751 STM14_0649 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236260.1 615283 D 588858 CDS YP_005236261.1 378448902 complement(615498..617150) 1 NC_016856.1 putative inner membrane protein 617150 588858000752 STM14_0650 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236261.1 615498 R 588858 CDS YP_005236262.1 378448903 complement(617131..618057) 1 NC_016856.1 similar to Escherichia coli putative glycan biosynthesis enzyme (AAC75410.1); putative glycosyltransferase 618057 yfdH 588858000753 yfdH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycosyltransferase YP_005236262.1 617131 R 588858 CDS YP_005236263.1 378448904 complement(618054..618416) 1 NC_016856.1 putative glycosyl translocase 618416 gtrA 588858000754 gtrA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycosyl translocase YP_005236263.1 618054 R 588858 CDS YP_005236264.1 378448905 complement(619284..619613) 1 NC_016856.1 similar to Escherichia coli putative 2-component sensor protein (AAC73671.1); sensor kinase 619613 588858000757 STM14_0655 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sensor kinase YP_005236264.1 619284 R 588858 CDS YP_006894086.1 410023234 619737..619901 1 NC_016856.1 hypothetical protein 619901 588858000758 STM14_05870 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_006894086.1 619737 D 588858 CDS YP_005236265.1 378448906 complement(619952..620806) 1 NC_016856.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC73408.1); AraC/XylS family; putative transcriptional regulator 620806 588858000759 STM14_0657 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005236265.1 619952 R 588858 CDS YP_005236266.1 378448907 621022..622347 1 NC_016856.1 Involved in disulfide oxidoreductase activity and electron transport; pyridine nucleotide-disulfide oxidoreductase 622347 588858000760 STM14_0658 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyridine nucleotide-disulfide oxidoreductase YP_005236266.1 621022 D 588858 CDS YP_005236267.1 378448908 complement(622266..622520) 1 NC_016856.1 hypothetical protein 622520 588858000761 STM14_0659 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236267.1 622266 R 588858 CDS YP_005236268.1 378448909 622504..622740 1 NC_016856.1 hypothetical protein 622740 588858000762 STM14_0660 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236268.1 622504 D 588858 CDS YP_005236269.1 378448910 622753..623313 1 NC_016856.1 putative inner membrane protein 623313 588858000763 STM14_0661 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236269.1 622753 D 588858 CDS YP_005236270.1 378448911 complement(623392..624567) 1 NC_016856.1 putative DNA repair ATPase 624567 588858000764 STM14_0662 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA repair ATPase YP_005236270.1 623392 R 588858 CDS YP_005236271.1 378448912 624893..626287 1 NC_016856.1 similar to Escherichia coli phenylalanine-specific transport system (AAC73677.1); APC family; phenylalanine transporter 626287 pheP 588858000765 pheP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phenylalanine transporter YP_005236271.1 624893 D 588858 CDS YP_005236272.1 378448913 complement(626329..627576) 1 NC_016856.1 similar to Escherichia coli putative transport (AAC73678.1); hypothetical protein 627576 ybdG 588858000766 ybdG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236272.1 626329 R 588858 CDS YP_005236273.1 378448914 627603..627788 1 NC_016856.1 hypothetical protein 627788 588858000767 STM14_0665 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236273.1 627603 D 588858 CDS YP_005236274.1 378448915 627887..629857 1 NC_016856.1 outer membrane esterase (gi|2896133); N-acetyl phenylalanine beta-naphthyl esterase; outer membrane esterase 629857 apeE 588858000768 apeE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane esterase YP_005236274.1 627887 D 588858 CDS YP_005236275.1 378448916 630024..632753 1 NC_016856.1 putative inner membrane protein 632753 588858000769 STM14_0667 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236275.1 630024 D 588858 CDS YP_005236276.1 378448917 complement(632881..633867) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC76396.1); putative phosphosugar isomerase 633867 588858000770 STM14_0668 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phosphosugar isomerase YP_005236276.1 632881 R 588858 CDS YP_005236277.1 378448918 complement(633934..634977) 1 NC_016856.1 similar to Escherichia coli L-glutamine/D-fructose-6-phosphate aminotransferase (AAC76752.1); putative inner membrane protein 634977 588858000771 STM14_0669 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236277.1 633934 R 588858 CDS YP_005236278.1 378448919 complement(635010..635864) 1 NC_016856.1 similar to Escherichia coli PTS enzyme IID; mannose-specific (AAC74889.1); putative PTS system mannose-specific enzyme IID 635864 588858000772 STM14_0670 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative PTS system mannose-specific enzyme IID YP_005236278.1 635010 R 588858 CDS YP_005236279.1 378448920 complement(635867..636610) 1 NC_016856.1 similar to Escherichia coli PTS enzyme IIC; mannose-specific (AAC74888.1); putative inner membrane protein 636610 588858000773 STM14_0671 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236279.1 635867 R 588858 CDS YP_005236280.1 378448921 complement(636625..637095) 1 NC_016856.1 similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1); putative PTS system mannose-specific enzyme IIAB 637095 588858000774 STM14_0672 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative PTS system mannose-specific enzyme IIAB YP_005236280.1 636625 R 588858 CDS YP_005236281.1 378448922 complement(637073..637522) 1 NC_016856.1 similar to Escherichia coli PTS enzyme IIAB; mannose-specific (AAC74887.1); putative PTS system mannose-specific enzyme IIAB 637522 588858000775 STM14_0673 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative PTS system mannose-specific enzyme IIAB YP_005236281.1 637073 R 588858 CDS YP_005236282.1 378448923 complement(637722..638375) 1 NC_016856.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 638375 nfnB 588858000776 nfnB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dihydropteridine reductase YP_005236282.1 637722 R 588858 CDS YP_005236283.1 378448924 complement(638472..638840) 1 NC_016856.1 hypothetical protein 638840 ybdF 588858000777 ybdF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236283.1 638472 R 588858 CDS YP_005236284.1 378448925 complement(638840..639421) 1 NC_016856.1 putative regulatory protein 639421 588858000778 STM14_0676 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005236284.1 638840 R 588858 CDS YP_005236285.1 378448926 639577..639684 1 NC_016856.1 hypothetical protein 639684 588858000779 STM14_0677 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236285.1 639577 D 588858 CDS YP_005236286.1 378448927 639710..640051 1 NC_016856.1 resistance against oxidative stress protein A (gi|9885772); putative regulatory protein 640051 588858000780 STM14_0678 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005236286.1 639710 D 588858 CDS YP_005236287.1 378448928 complement(640057..640305) 1 NC_016856.1 putative inner membrane protein 640305 ybdJ 588858000781 ybdJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236287.1 640057 R 588858 CDS YP_005236288.1 378448929 complement(640372..641490) 1 NC_016856.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase 641490 ybdK 588858000782 ybdK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S carboxylate-amine ligase YP_005236288.1 640372 R 588858 CDS YP_005236289.1 378448930 complement(641502..642206) 1 NC_016856.1 similar to Escherichia coli enterochelin synthetase component D (AAC73684.1); phoshpantetheinyltransferase; phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex 642206 entD 588858000783 entD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex YP_005236289.1 641502 R 588858 CDS YP_005236290.1 378448931 complement(642252..644507) 1 NC_016856.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 644507 fepA 588858000784 fepA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane receptor FepA YP_005236290.1 642252 R 588858 CDS YP_005236291.1 378448932 complement(644504..644635) 1 NC_016856.1 hypothetical protein 644635 588858000785 STM14_0683 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236291.1 644504 R 588858 CDS YP_005236292.1 378448933 644696..645910 1 NC_016856.1 similar to Escherichia coli enterochelin esterase (AAC73686.1); enterobactin/ferric enterobactin esterase 645910 fes 588858000786 fes Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S enterobactin/ferric enterobactin esterase YP_005236292.1 644696 D 588858 CDS YP_005236293.1 378448934 645941..646159 1 NC_016856.1 putative cytoplasmic protein 646159 ybdZ 588858000787 ybdZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236293.1 645941 D 588858 CDS YP_005236294.1 378448935 646156..650040 1 NC_016856.1 with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin; enterobactin synthase subunit F 650040 entF 588858000788 entF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S enterobactin synthase subunit F YP_005236294.1 646156 D 588858 CDS YP_005236295.1 378448936 650290..651426 1 NC_016856.1 part of the ferric enterobactin transport system; necessary for enetrobactin uptake; ferric enterobactin transport protein FepE 651426 fepE 588858000789 fepE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ferric enterobactin transport protein FepE YP_005236295.1 650290 D 588858 CDS YP_005236296.1 378448937 complement(651479..652273) 1 NC_016856.1 with FepBDE is involved in the transport of ferric enterobactin; iron-enterobactin transporter ATP-binding protein 652273 fepC 588858000790 fepC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S iron-enterobactin transporter ATP-binding protein YP_005236296.1 651479 R 588858 CDS YP_005236297.1 378448938 complement(652270..653259) 1 NC_016856.1 with FepBCD is involved in the transport of ferric enterobactin; iron-enterobactin transporter permease 653259 fepG 588858000791 fepG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S iron-enterobactin transporter permease YP_005236297.1 652270 R 588858 CDS YP_005236298.1 378448939 complement(653259..654266) 1 NC_016856.1 with FepBCG is involved in the transport of ferric enterobactin; iron-enterobactin transporter membrane protein 654266 fepD 588858000792 fepD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S iron-enterobactin transporter membrane protein YP_005236298.1 653259 R 588858 CDS YP_005236299.1 378448940 654377..655621 1 NC_016856.1 protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; enterobactin exporter EntS 655621 ybdA 588858000793 ybdA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S enterobactin exporter EntS YP_005236299.1 654377 D 588858 CDS YP_005236300.1 378448941 complement(655684..656640) 1 NC_016856.1 with FepCDG is involved in the transport of ferric enterobactin; iron-enterobactin transporter periplasmic binding protein 656640 fepB 588858000794 fepB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S iron-enterobactin transporter periplasmic binding protein YP_005236300.1 655684 R 588858 CDS YP_005236301.1 378448942 656949..658124 1 NC_016856.1 synthesizes isochorismate acid from chorismate; isochorismate synthase 658124 entC 588858000795 entC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S isochorismate synthase YP_005236301.1 656949 D 588858 CDS YP_005236302.1 378448943 658134..659744 1 NC_016856.1 bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; enterobactin synthase subunit E 659744 entE 588858000796 entE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S enterobactin synthase subunit E YP_005236302.1 658134 D 588858 CDS YP_005236303.1 378448944 659758..660615 1 NC_016856.1 similar to Escherichia coli 2,3-dihydro-2,3-dihydroxybenzoate synthetase; isochroismatase (AAC73696.1); 2,3-dihydro-2,3-dihydroxybenzoate synthetase 660615 entB 588858000797 entB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2,3-dihydro-2,3-dihydroxybenzoate synthetase YP_005236303.1 659758 D 588858 CDS YP_005236304.1 378448945 660615..661370 1 NC_016856.1 catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; 2,3-dihydroxybenzoate-2,3-dehydrogenase 661370 entA 588858000798 entA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2,3-dihydroxybenzoate-2,3-dehydrogenase YP_005236304.1 660615 D 588858 CDS YP_005236305.1 378448946 661373..661786 1 NC_016856.1 possibly involved in aromatic compounds catabolism; PaaI; hypothetical protein 661786 ybdB 588858000799 ybdB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236305.1 661373 D 588858 CDS YP_005236306.1 378448947 661861..661971 1 NC_016856.1 hypothetical protein 661971 588858000800 STM14_0698 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236306.1 661861 D 588858 CDS YP_005236307.1 378448948 661968..664073 1 NC_016856.1 similar to Escherichia coli carbon starvation protein (AAC73699.1); carbon starvation protein 664073 cstA 588858000801 cstA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S carbon starvation protein YP_005236307.1 661968 D 588858 CDS YP_005236308.1 378448949 664137..664334 1 NC_016856.1 putative cytoplasmic protein 664334 ybdD 588858000802 ybdD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236308.1 664137 D 588858 CDS YP_005236309.1 378448950 complement(664370..665458) 1 NC_016856.1 member of the iron-containing alcohol dehydrogenase family; unknown function; hypothetical protein 665458 ybdH 588858000803 ybdH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236309.1 664370 R 588858 CDS YP_005236310.1 378448951 665585..666745 1 NC_016856.1 catalyzes the transfer of an amino moiety; putative aminotransferase 666745 ybdL 588858000804 ybdL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative aminotransferase YP_005236310.1 665585 D 588858 CDS YP_005236311.1 378448952 complement(666746..667363) 1 NC_016856.1 putative transcriptional regulator 667363 ybdM 588858000805 ybdM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005236311.1 666746 R 588858 CDS YP_005236312.1 378448953 complement(667336..668571) 1 NC_016856.1 PAPS reductase/FAD synthetase; putative 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase 668571 ybdN 588858000806 ybdN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase YP_005236312.1 667336 R 588858 CDS YP_005236313.1 378448954 complement(668737..669639) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73704.1); LysR family; putative transcriptional regulator 669639 ybdO 588858000807 ybdO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005236313.1 668737 R 588858 CDS YP_005236314.1 378448955 complement(669956..670702) 1 NC_016856.1 Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase 670702 dsbG 588858000808 dsbG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S disulfide isomerase/thiol-disulfide oxidase YP_005236314.1 669956 R 588858 CDS YP_005236315.1 378448956 671143..671706 1 NC_016856.1 with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase subunit C 671706 ahpC 588858000809 ahpC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S alkyl hydroperoxide reductase subunit C YP_005236315.1 671143 D 588858 CDS YP_005236316.1 378448957 671831..673513 1 NC_016856.1 alkyl hydroperoxide reductase subunit F (SW:AHPF_SALTY); detoxification of hydroperoxides; alkyl hydroperoxide reductase F52a subunit 673513 ahpF 588858000810 ahpF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S alkyl hydroperoxide reductase F52a subunit YP_005236316.1 671831 D 588858 CDS YP_005236317.1 378448958 673845..674405 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase component (AAC74663.1); putative anaerobic dehydrogenase component 674405 588858000811 STM14_0709 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative anaerobic dehydrogenase component YP_005236317.1 673845 D 588858 CDS YP_005236318.1 378448959 674398..676677 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase; major subunit (AAC74659.1); putative oxidoreductase protein 676677 588858000812 STM14_0710 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative oxidoreductase protein YP_005236318.1 674398 D 588858 CDS YP_005236319.1 378448960 676674..677033 1 NC_016856.1 molybdopterin-containing oxidoreductase iron-sulfur subunit 677033 588858000813 STM14_0711 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S molybdopterin-containing oxidoreductase iron-sulfur subunit YP_005236319.1 676674 D 588858 CDS YP_005236320.1 378448961 677033..677800 1 NC_016856.1 similar to Escherichia coli putative DMSO reductase anchor subunit (AAC74662.1); putative hydrogenase protein 677800 588858000814 STM14_0712 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrogenase protein YP_005236320.1 677033 D 588858 CDS YP_005236321.1 378448962 complement(677868..678296) 1 NC_016856.1 similar to UspA and related nucleotide-binding protein; putative universal stress protein 678296 ybdQ 588858000815 ybdQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative universal stress protein YP_005236321.1 677868 R 588858 CDS YP_005236322.1 378448963 678228..678434 1 NC_016856.1 hypothetical protein 678434 588858000816 STM14_0714 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236322.1 678228 D 588858 CDS YP_005236323.1 378448964 complement(678399..678539) 1 NC_016856.1 hypothetical protein 678539 588858000817 STM14_0715 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236323.1 678399 R 588858 CDS YP_005236324.1 378448965 678519..679757 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC73709.1); putative dehydrogenase 679757 ybdR 588858000818 ybdR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dehydrogenase YP_005236324.1 678519 D 588858 CDS YP_005236325.1 378448966 complement(679840..680250) 1 NC_016856.1 Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator 680250 rnk 588858000819 rnk Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nucleoside diphosphate kinase regulator YP_005236325.1 679840 R 588858 CDS YP_005236326.1 378448967 complement(680485..681291) 1 NC_016856.1 similar to Escherichia coli RNase I; cleaves phosphodiester bond between any two nucleotides (AAC73712.1); ribonuclease I 681291 rna 588858000820 rna Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonuclease I YP_005236326.1 680485 R 588858 CDS YP_005236327.1 378448968 complement(681401..682864) 1 NC_016856.1 similar to Escherichia coli putative membrane protein (AAC73713.1); DASS family; citrate/succinate transport antiport protein 682864 citT 588858000821 citT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S citrate/succinate transport antiport protein YP_005236327.1 681401 R 588858 CDS YP_005236328.1 378448969 complement(682902..683798) 1 NC_016856.1 catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA; triphosphoribosyl-dephospho-CoA synthase 683798 citG 588858000822 citG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S triphosphoribosyl-dephospho-CoA synthase YP_005236328.1 682902 R 588858 CDS YP_005236329.1 378448970 complement(683770..684321) 1 NC_016856.1 2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate; 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase 684321 citX 588858000823 citX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase YP_005236329.1 683770 R 588858 CDS YP_005236330.1 378448971 complement(684325..685854) 1 NC_016856.1 similar to Escherichia coli citrate lyase alpha chain (AAC73716.1); citrate lyase subunit alpha/citrate-ACP transferase 685854 citF 588858000824 citF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S citrate lyase subunit alpha/citrate-ACP transferase YP_005236330.1 684325 R 588858 CDS YP_005236331.1 378448972 complement(685864..686772) 1 NC_016856.1 similar to Escherichia coli citrate lyase beta chain; acyl lyase subunit (AAC73717.1); citrate lyase subunit beta 686772 citE 588858000825 citE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S citrate lyase subunit beta YP_005236331.1 685864 R 588858 CDS YP_005236332.1 378448973 complement(686769..687065) 1 NC_016856.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 687065 citD 588858000826 citD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S citrate lyase subunit gamma YP_005236332.1 686769 R 588858 CDS YP_005236333.1 378448974 complement(687062..688138) 1 NC_016856.1 similar to Escherichia coli citrate lyase synthetase; citrate (pro-3S)-lyase ligase (AAC73719.1); citrate lyase synthetase 688138 citC 588858000827 citC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S citrate lyase synthetase YP_005236333.1 687062 R 588858 CDS YP_005236334.1 378448975 688331..688513 1 NC_016856.1 hypothetical protein 688513 588858000828 STM14_0726 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236334.1 688331 D 588858 CDS YP_005236335.1 378448976 688523..690184 1 NC_016856.1 similar to Escherichia coli putative sensor-type protein (AAC73720.1); in two-component regulatory system with DpiA; regulation of cit operon and plasmid inheritance genes; sensory histidine kinase 690184 dpiB 588858000829 dpiB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sensory histidine kinase YP_005236335.1 688523 D 588858 CDS YP_005236336.1 378448977 690153..690833 1 NC_016856.1 regulates the expression of citAB in citrate fermentation; two-component response regulator DpiA 690833 dpiA 588858000830 dpiA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S two-component response regulator DpiA YP_005236336.1 690153 D 588858 CDS YP_005236337.1 378448978 complement(690887..692272) 1 NC_016856.1 responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC 692272 dcuC 588858000831 dcuC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S C4-dicarboxylate transporter DcuC YP_005236337.1 690887 R 588858 CDS YP_005236338.1 378448979 692333..692443 1 NC_016856.1 hypothetical protein 692443 588858000832 STM14_0730 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236338.1 692333 D 588858 CDS YP_005236339.1 378448980 692651..693223 1 NC_016856.1 PagP (gi|3789781); palmitoyl transferase for Lipid A 693223 pagP 588858000833 pagP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S palmitoyl transferase for Lipid A YP_005236339.1 692651 D 588858 CDS YP_005236340.1 378448981 693411..693620 1 NC_016856.1 member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; cold shock protein CspE 693620 cspE 588858000834 cspE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cold shock protein CspE YP_005236340.1 693411 D 588858 CDS YP_005236341.1 378448982 complement(693678..694061) 1 NC_016856.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 694061 ccrB 588858000835 ccrB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S camphor resistance protein CrcB YP_005236341.1 693678 R 588858 CDS YP_005236342.1 378448983 694152..694940 1 NC_016856.1 similar to Escherichia coli putative amidase (AAC73727.1); putative hydrolase 694940 ybeM 588858000836 ybeM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrolase YP_005236342.1 694152 D 588858 CDS YP_005236343.1 378448984 694969..695076 1 NC_016856.1 hypothetical protein 695076 588858000837 STM14_0735 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236343.1 694969 D 588858 CDS YP_005236344.1 378448985 695069..695272 1 NC_016856.1 TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein E 695272 tatE 588858000838 tatE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S twin arginine translocase protein E YP_005236344.1 695069 D 588858 CDS YP_005236345.1 378448986 complement(695358..696323) 1 NC_016856.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 696323 lipA 588858000839 lipA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipoyl synthase YP_005236345.1 695358 R 588858 CDS YP_005236346.1 378448987 complement(696364..696498) 1 NC_016856.1 hypothetical protein 696498 588858000840 STM14_0738 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236346.1 696364 R 588858 CDS YP_005236347.1 378448988 complement(696529..697482) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73730.1); LysR family; putative DNA-binding transcriptional regulator 697482 ybeF 588858000841 ybeF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA-binding transcriptional regulator YP_005236347.1 696529 R 588858 CDS YP_005236348.1 378448989 complement(697584..697727) 1 NC_016856.1 hypothetical protein 697727 588858000842 STM14_0740 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236348.1 697584 R 588858 CDS YP_005236349.1 378448990 complement(697784..698425) 1 NC_016856.1 lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism; lipoyltransferase 698425 lipB 588858000843 lipB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipoyltransferase YP_005236349.1 697784 R 588858 CDS YP_005236350.1 378448991 698354..698719 1 NC_016856.1 hypothetical protein 698719 588858000844 STM14_0742 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236350.1 698354 D 588858 CDS YP_005236351.1 378448992 complement(698525..698788) 1 NC_016856.1 hypothetical protein 698788 ybeD 588858000845 ybeD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236351.1 698525 R 588858 CDS YP_005236352.1 378448993 complement(698897..700108) 1 NC_016856.1 penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; D-alanyl-D-alanine carboxypeptidase 700108 dacA 588858000846 dacA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-alanyl-D-alanine carboxypeptidase YP_005236352.1 698897 R 588858 CDS YP_005236353.1 378448994 700128..700277 1 NC_016856.1 hypothetical protein 700277 588858000847 STM14_0745 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236353.1 700128 D 588858 CDS YP_005236354.1 378448995 complement(700248..701393) 1 NC_016856.1 similar to Escherichia coli minor lipoprotein (AAC73734.1); rare lipoprotein A 701393 rlpA 588858000848 rlpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S rare lipoprotein A YP_005236354.1 700248 R 588858 CDS YP_005236355.1 378448996 complement(701404..702516) 1 NC_016856.1 similar to Escherichia coli rod shape-determining membrane protein; sensitivity to radiation and drugs (AAC73735.1); cell elongation in exponential phase; cell wall shape-determining protein 702516 mrdB 588858000849 mrdB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell wall shape-determining protein YP_005236355.1 701404 R 588858 CDS YP_005236356.1 378448997 complement(702519..704420) 1 NC_016856.1 similar to Escherichia coli cell elongation e phase protein; peptidoglycan synthetase; penicillin-binding protein 2 (AAC73736.1); penicillin-binding protein 2 704420 mrdA 588858000850 mrdA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S penicillin-binding protein 2 YP_005236356.1 702519 R 588858 CDS YP_005236357.1 378448998 complement(704451..704918) 1 NC_016856.1 enzyme from Escherichia coli has not been shown to exhibit methyltransferase activity; crystal structure shows homodimer; SPOUT methyltransferase superfamily protein 704918 ybeA 588858000851 ybeA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S SPOUT methyltransferase superfamily protein YP_005236357.1 704451 R 588858 CDS YP_005236358.1 378448999 complement(704922..705239) 1 NC_016856.1 similar to putative ACR plant Iojap protein; hypothetical protein 705239 ybeB 588858000852 ybeB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236358.1 704922 R 588858 CDS YP_005236359.1 378449000 complement(705568..706176) 1 NC_016856.1 alpha-ribazole-5'-phosphate phosphatase (SW:COBC_SALTY); cobalamin synthesis; alpha ribazole-5'-P phosphatase 706176 cobC 588858000853 cobC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S alpha ribazole-5'-P phosphatase YP_005236359.1 705568 R 588858 CDS YP_005236360.1 378449001 706273..707367 1 NC_016856.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 707367 cobD 588858000854 cobD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S threonine-phosphate decarboxylase YP_005236360.1 706273 D 588858 CDS YP_005236361.1 378449002 complement(707342..707983) 1 NC_016856.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 707983 nadD 588858000855 nadD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nicotinic acid mononucleotide adenylyltransferase YP_005236361.1 707342 R 588858 CDS YP_005236362.1 378449003 complement(707985..709016) 1 NC_016856.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 709016 holA 588858000856 holA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA polymerase III subunit delta YP_005236362.1 707985 R 588858 CDS YP_005236363.1 378449004 complement(709016..709606) 1 NC_016856.1 rare lipoprotein B; involved in the assembly of LPS in the outer membrane; LPS-assembly lipoprotein RplB 709606 rlpB 588858000857 rlpB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S LPS-assembly lipoprotein RplB YP_005236363.1 709016 R 588858 CDS YP_005236364.2 410023159 complement(709621..712203) 1 NC_016856.1 hypothetical protein 712203 588858000858 STM14_0756 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236364.2 709621 R 588858 CDS YP_005236365.1 378449006 712491..712781 1 NC_016856.1 similar to Escherichia coli altronate hydrolase N-terminus (AAC76126.1); putative hydrolase 712781 588858000859 STM14_0757 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrolase YP_005236365.1 712491 D 588858 CDS YP_005236366.1 378449007 712798..713970 1 NC_016856.1 similar to Escherichia coli putative hydrolase C-terminus (AAC76162.1); putative hydrolase 713970 588858000860 STM14_0758 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrolase YP_005236366.1 712798 D 588858 CDS YP_005236367.1 378449008 714020..714973 1 NC_016856.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 714973 588858000861 STM14_0759 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-keto-3-deoxygluconate permease YP_005236367.1 714020 D 588858 CDS YP_005236368.1 378449009 715041..716969 1 NC_016856.1 similar to Escherichia coli response regulator of ato; ornithine decarboxylase antizyme; sensor ATOS (AAC75280.1); putative sigma-54 dependent transcriptional regulator 716969 588858000862 STM14_0760 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sigma-54 dependent transcriptional regulator YP_005236368.1 715041 D 588858 CDS YP_005236369.1 378449010 717062..717535 1 NC_016856.1 similar to Escherichia coli putative alpha helical protein (AAC73744.1); hypothetical protein 717535 ybeL 588858000863 ybeL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236369.1 717062 D 588858 CDS YP_005236370.1 378449011 complement(717574..718569) 1 NC_016856.1 TPR repeat; hypothetical protein 718569 ybeQ 588858000864 ybeQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236370.1 717574 R 588858 CDS YP_005236371.1 378449012 718694..719401 1 NC_016856.1 putative cytoplasmic protein 719401 ybeR 588858000865 ybeR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236371.1 718694 D 588858 CDS YP_005236372.1 378449013 719398..720831 1 NC_016856.1 similar to Escherichia coli putative enzyme of polynucleotide modification (AAC73747.1); DnaJ family; putative molecular chaperone 720831 ybeS 588858000866 ybeS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative molecular chaperone YP_005236372.1 719398 D 588858 CDS YP_005236373.1 378449014 721536..723008 1 NC_016856.1 DnaJ family; putative molecular chaperone 723008 ybeV 588858000868 ybeV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative molecular chaperone YP_005236373.1 721536 D 588858 CDS YP_005236374.1 378449015 complement(723030..724709) 1 NC_016856.1 similar to Escherichia coli putative DnaK protein (AAC73751.1); similar to Hsp70 in Hsc66 subfamily; putative heatshock protein 724709 hscC 588858000869 hscC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative heatshock protein YP_005236374.1 723030 R 588858 CDS YP_005236375.1 378449016 complement(724785..726023) 1 NC_016856.1 putative cytoplasmic protein 726023 588858000870 STM14_0768 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236375.1 724785 R 588858 CDS YP_005236376.1 378449017 complement(726055..726990) 1 NC_016856.1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 726990 rihA 588858000871 rihA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonucleoside hydrolase 1 YP_005236376.1 726055 R 588858 CDS YP_005236377.1 378449018 complement(727107..727832) 1 NC_016856.1 similar to Escherichia coli ATP-binding protein of glutamate/aspartate transport system (AAC73753.1); ABC superfamily ATP-binding protein; glutamate/aspartate transporter 727832 gltL 588858000872 gltL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamate/aspartate transporter YP_005236377.1 727107 R 588858 CDS YP_005236378.1 378449019 complement(727832..728506) 1 NC_016856.1 similar to Escherichia coli glutamate/aspartate transport system permease (AAC73754.1); ABC superfamily membrane protein; glutamate/aspartate transporter 728506 gltK 588858000873 gltK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamate/aspartate transporter YP_005236378.1 727832 R 588858 CDS YP_005236379.1 378449020 complement(728506..729246) 1 NC_016856.1 similar to Escherichia coli glutamate/aspartate transport system permease (AAC73755.1); ABC superfamily membrane protein; glutamate/aspartate transporter 729246 gltJ 588858000874 gltJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamate/aspartate transporter YP_005236379.1 728506 R 588858 CDS YP_005236380.1 378449021 complement(729406..730332) 1 NC_016856.1 similar to Escherichia coli putative periplasmic binding transport protein (AAC73756.1); ABC superfamily binding protein; glutamate and aspartate transporter subunit 730332 gltI 588858000875 gltI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamate and aspartate transporter subunit YP_005236380.1 729406 R 588858 CDS YP_005236381.1 378449022 730309..730596 1 NC_016856.1 hypothetical protein 730596 588858000876 STM14_0774 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236381.1 730309 D 588858 CDS YP_005236382.1 378449023 complement(730669..732207) 1 NC_016856.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 732207 lnt 588858000877 lnt Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S apolipoprotein N-acyltransferase YP_005236382.1 730669 R 588858 CDS YP_005236383.1 378449024 complement(732227..733105) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC73759.1); contains putative CBS domain; putative transport protein 733105 ybeX 588858000878 ybeX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005236383.1 732227 R 588858 CDS YP_005236384.1 378449025 complement(733102..733251) 1 NC_016856.1 hypothetical protein 733251 588858000879 STM14_0777 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236384.1 733102 R 588858 CDS YP_005236385.1 378449026 complement(733263..733736) 1 NC_016856.1 hypothetical protein in cutE-corC intergenic region (SW:YBEY_SALTY); putative metalloprotease 733736 ybeY 588858000880 ybeY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative metalloprotease YP_005236385.1 733263 R 588858 CDS YP_005236386.1 378449027 complement(733733..734818) 1 NC_016856.1 similar to Escherichia coli putative ATP-binding protein in pho regulon (AAC73761.1); putative phosphate starvation-inducible protein 734818 phoL 588858000881 phoL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phosphate starvation-inducible protein YP_005236386.1 733733 R 588858 CDS YP_005236387.1 378449028 complement(734838..734957) 1 NC_016856.1 hypothetical protein 734957 588858000882 STM14_0780 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236387.1 734838 R 588858 CDS YP_005236388.1 378449029 complement(734984..736408) 1 NC_016856.1 methylthiolation of isopentenylated A37 derivatives in rRNA; rRNA modification protein 736408 miaB 588858000883 miaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S rRNA modification protein YP_005236388.1 734984 R 588858 CDS YP_005236389.1 378449030 736552..737727 1 NC_016856.1 catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 737727 ubiF 588858000884 ubiF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_005236389.1 736552 D 588858 CDS YP_005236390.1 378449031 complement(737794..738369) 1 NC_016856.1 putative inner membrane protein 738369 588858000885 STM14_0783 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236390.1 737794 R 588858 CDS YP_005236391.1 378449032 739310..739477 1 NC_016856.1 hypothetical protein 739477 588858000893 STM14_0791 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236391.1 739310 D 588858 CDS YP_005236392.1 378449033 complement(739436..741100) 1 NC_016856.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 741100 asnB 588858000894 asnB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S asparagine synthetase B YP_005236392.1 739436 R 588858 CDS YP_005236393.1 378449034 complement(741390..742142) 1 NC_016856.1 similar to Escherichia coli N-acetylglucosamine metabolism (AAC73769.1); UMP phosphatase 742142 nagD 588858000895 nagD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UMP phosphatase YP_005236393.1 741390 R 588858 CDS YP_005236394.1 378449035 complement(742189..743409) 1 NC_016856.1 similar to Escherichia coli transcriptional repressor of nag; N-acetylglucosamine operon (AAC73770.1); NagC/XylR family; N-acetylglucosamine operon transcriptional repressor 743409 nagC 588858000896 nagC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N-acetylglucosamine operon transcriptional repressor YP_005236394.1 742189 R 588858 CDS YP_005236395.1 378449036 complement(743414..744568) 1 NC_016856.1 catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase 744568 nagA 588858000897 nagA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N-acetylglucosamine-6-phosphate deacetylase YP_005236395.1 743414 R 588858 CDS YP_005236396.1 378449037 complement(744628..745428) 1 NC_016856.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 745428 nagB 588858000898 nagB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucosamine-6-phosphate deaminase YP_005236396.1 744628 R 588858 CDS YP_005236397.1 378449038 complement(745470..745595) 1 NC_016856.1 hypothetical protein 745595 588858000899 STM14_0797 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236397.1 745470 R 588858 CDS YP_005236398.1 378449039 745755..747707 1 NC_016856.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; N-acetyl glucosamine specific PTS system components IIABC 747707 nagE 588858000900 nagE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N-acetyl glucosamine specific PTS system components IIABC YP_005236398.1 745755 D 588858 CDS YP_005236399.1 378449040 747918..749585 1 NC_016856.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 749585 glnS 588858000901 glnS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutaminyl-tRNA synthetase YP_005236399.1 747918 D 588858 CDS YP_005236400.1 378449041 749621..749734 1 NC_016856.1 hypothetical protein 749734 588858000902 STM14_0800 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236400.1 749621 D 588858 CDS YP_005236401.1 378449042 749864..750154 1 NC_016856.1 hypothetical protein 750154 588858000903 STM14_0801 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236401.1 749864 D 588858 CDS YP_005236402.1 378449043 750031..751437 1 NC_016856.1 putative outer membrane protein 751437 ybfM 588858000904 ybfM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005236402.1 750031 D 588858 CDS YP_005236403.1 378449044 751487..751819 1 NC_016856.1 putative lipoprotein 751819 ybfN 588858000905 ybfN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative lipoprotein YP_005236403.1 751487 D 588858 CDS YP_005236404.1 378449045 complement(751868..753172) 1 NC_016856.1 citrate-proton symporter (citrate transporter). (SW:CIT1_SALTY); citrate-proton symporter 753172 citA 588858000906 citA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S citrate-proton symporter YP_005236404.1 751868 R 588858 CDS YP_005236405.1 378449046 complement(753223..754362) 1 NC_016856.1 citrate utilization protein B (SW:CIT2_SALTY); citrate utilization protein b 754362 citB 588858000907 citB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S citrate utilization protein b YP_005236405.1 753223 R 588858 CDS YP_005236406.1 378449047 complement(754349..755752) 1 NC_016856.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 755752 588858000908 STM14_0806 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tricarballylate dehydrogenase YP_005236406.1 754349 R 588858 CDS YP_005236407.1 378449048 complement(755850..756776) 1 NC_016856.1 similar to Escherichia coli nitrogen assimilation control protein (AAC75050.1); LysR family; putative transcriptional regulator 756776 588858000909 STM14_0807 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005236407.1 755850 R 588858 CDS YP_005236408.1 378449049 complement(756891..757343) 1 NC_016856.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 757343 fur 588858000910 fur Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ferric uptake regulator YP_005236408.1 756891 R 588858 CDS YP_005236409.1 378449050 757442..757591 1 NC_016856.1 hypothetical protein 757591 588858000911 STM14_0809 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236409.1 757442 D 588858 CDS YP_005236410.1 378449051 complement(757625..758254) 1 NC_016856.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 758254 fldA 588858000912 fldA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flavodoxin FldA YP_005236410.1 757625 R 588858 CDS YP_005236411.1 378449052 complement(758318..758599) 1 NC_016856.1 LexA-regulated; LexA regulated protein 758599 ybfE 588858000913 ybfE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S LexA regulated protein YP_005236411.1 758318 R 588858 CDS YP_005236412.1 378449053 758607..758720 1 NC_016856.1 hypothetical protein 758720 588858000914 STM14_0812 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236412.1 758607 D 588858 CDS YP_005236413.1 378449054 complement(758733..759503) 1 NC_016856.1 hypothetical protein 759503 ybfF 588858000915 ybfF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236413.1 758733 R 588858 CDS YP_005236414.1 378449055 759655..760230 1 NC_016856.1 negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 760230 seqA 588858000916 seqA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S replication initiation regulator SeqA YP_005236414.1 759655 D 588858 CDS YP_005236415.1 378449056 760255..761895 1 NC_016856.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 761895 pgm 588858000917 pgm Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoglucomutase YP_005236415.1 760255 D 588858 CDS YP_005236416.1 378449057 complement(762010..762495) 1 NC_016856.1 putative cytoplasmic protein 762495 588858000918 STM14_0816 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236416.1 762010 R 588858 CDS YP_005236417.1 378449058 complement(762560..763879) 1 NC_016856.1 catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 763879 potE 588858000919 potE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putrescine transporter YP_005236417.1 762560 R 588858 CDS YP_005236418.1 378449059 complement(763876..766074) 1 NC_016856.1 similar to Escherichia coli ornithine decarboxylase isozyme; inducible (AAC73787.1); ornithine decarboxylase 766074 speF 588858000920 speF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ornithine decarboxylase YP_005236418.1 763876 R 588858 CDS YP_005236419.1 378449060 complement(766193..766318) 1 NC_016856.1 hypothetical protein 766318 588858000921 STM14_0819 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236419.1 766193 R 588858 CDS YP_005236420.1 378449061 766472..766585 1 NC_016856.1 hypothetical protein 766585 588858000922 STM14_0820 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236420.1 766472 D 588858 CDS YP_005236421.1 378449062 complement(766836..767513) 1 NC_016856.1 response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; DNA-binding transcriptional activator KdpE 767513 kdpE 588858000923 kdpE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional activator KdpE YP_005236421.1 766836 R 588858 CDS YP_005236422.1 378449063 complement(767510..770194) 1 NC_016856.1 sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; sensor protein KdpD 770194 kdpD 588858000924 kdpD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sensor protein KdpD YP_005236422.1 767510 R 588858 CDS YP_005236423.1 378449064 complement(770191..770775) 1 NC_016856.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 770775 kdpC 588858000925 kdpC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S potassium-transporting ATPase subunit C YP_005236423.1 770191 R 588858 CDS YP_005236424.1 378449065 complement(770784..772832) 1 NC_016856.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 772832 kdpB 588858000926 kdpB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S potassium-transporting ATPase subunit B YP_005236424.1 770784 R 588858 CDS YP_005236425.1 378449066 complement(772853..774532) 1 NC_016856.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 774532 kdpA 588858000927 kdpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S potassium-transporting ATPase subunit A YP_005236425.1 772853 R 588858 CDS YP_005236426.1 378449067 complement(774532..774729) 1 NC_016856.1 K+-transporting ATPase subunit F 774729 588858000928 STM14_0826 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S K+-transporting ATPase subunit F YP_005236426.1 774532 R 588858 CDS YP_005236427.1 378449068 774958..775164 1 NC_016856.1 hypothetical protein 775164 ybfA 588858000929 ybfA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236427.1 774958 D 588858 CDS YP_005236428.1 378449069 775275..776696 1 NC_016856.1 UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; deoxyribodipyrimidine photolyase 776696 phrB 588858000930 phrB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S deoxyribodipyrimidine photolyase YP_005236428.1 775275 D 588858 CDS YP_005236429.2 410023160 complement(776735..778216) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC73803.1); POT family transport protein 778216 ybgH 588858000931 ybgH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S POT family transport protein YP_005236429.2 776735 R 588858 CDS YP_005236430.1 378449071 778545..779288 1 NC_016856.1 putative hydrolase-oxidase 779288 ybgI 588858000932 ybgI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrolase-oxidase YP_005236430.1 778545 D 588858 CDS YP_005236431.1 378449072 779304..779960 1 NC_016856.1 similar to Escherichia coli putative carboxylase (AAC73805.1); putative carboxylase 779960 ybgJ 588858000933 ybgJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative carboxylase YP_005236431.1 779304 D 588858 CDS YP_005236432.1 378449073 779954..780886 1 NC_016856.1 similar to Escherichia coli putative carboxylase (AAC73806.1); putative carboxylase 780886 ybgK 588858000934 ybgK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative carboxylase YP_005236432.1 779954 D 588858 CDS YP_005236433.1 378449074 780876..781610 1 NC_016856.1 similar to Escherichia coli putative lactam utilization protein (AAC73807.1); hypothetical protein 781610 ybgL 588858000935 ybgL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236433.1 780876 D 588858 CDS YP_005236434.1 378449075 781934..782065 1 NC_016856.1 putative cytoplasmic protein 782065 588858000936 STM14_0834 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236434.1 781934 D 588858 CDS YP_005236435.1 378449076 782125..782691 1 NC_016856.1 similar to Escherichia coli recombinase involved in phase variation; regulator for fimA (AAC77268.1); putative phage integrase 782691 588858000937 STM14_0835 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phage integrase YP_005236435.1 782125 D 588858 CDS YP_005236436.1 378449077 783151..783486 1 NC_016856.1 putative inner membrane protein 783486 588858000938 STM14_0836 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236436.1 783151 D 588858 CDS YP_005236437.1 378449078 783488..784228 1 NC_016856.1 putative cytoplasmic protein 784228 588858000939 STM14_0837 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236437.1 783488 D 588858 CDS YP_005236438.1 378449079 784514..785665 1 NC_016856.1 similar to Escherichia coli UDP-galactopyranose mutase (AAC75097.1); putative UDP-galactopyranose mutase 785665 588858000940 STM14_0838 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative UDP-galactopyranose mutase YP_005236438.1 784514 D 588858 CDS YP_005236439.1 378449080 785662..786558 1 NC_016856.1 putative glycosyl transferase 786558 588858000941 STM14_0839 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycosyl transferase YP_005236439.1 785662 D 588858 CDS YP_005236440.1 378449081 786571..787704 1 NC_016856.1 similar to Escherichia coli putative colanic acid biosynthesis glycosyl transferase (AAC75105.1); putative glycosyl transferase 787704 588858000942 STM14_0840 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycosyl transferase YP_005236440.1 786571 D 588858 CDS YP_005236441.1 378449082 787833..788603 1 NC_016856.1 ABC transporter permease 788603 588858000943 STM14_0841 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ABC transporter permease YP_005236441.1 787833 D 588858 CDS YP_005236442.1 378449083 788607..789317 1 NC_016856.1 similar to Escherichia coli ATP-binding component of putrescine transport system (AAC73942.1); putative ABC-type polysaccharide/polyol phosphate transport system ATPase component 789317 588858000944 STM14_0842 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type polysaccharide/polyol phosphate transport system ATPase component YP_005236442.1 788607 D 588858 CDS YP_005236443.1 378449084 789411..791189 1 NC_016856.1 cell wall biogenesis; putative glycosyltransferase 791189 588858000945 STM14_0843 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycosyltransferase YP_005236443.1 789411 D 588858 CDS YP_005236444.1 378449085 791382..792215 1 NC_016856.1 cell wall biogenesis; putative glycosyltransferase 792215 588858000946 STM14_0844 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycosyltransferase YP_005236444.1 791382 D 588858 CDS YP_005236445.1 378449086 792273..794168 1 NC_016856.1 putative glycosyl transferase 794168 588858000947 STM14_0845 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycosyl transferase YP_005236445.1 792273 D 588858 CDS YP_005236446.1 378449087 794236..794373 1 NC_016856.1 putative cytoplasmic protein 794373 588858000948 STM14_0846 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236446.1 794236 D 588858 CDS YP_005236447.1 378449088 794422..795213 1 NC_016856.1 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity; endonuclease VIII 795213 nei 588858000949 nei Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S endonuclease VIII YP_005236447.1 794422 D 588858 CDS YP_005236448.1 378449089 complement(795268..796314) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC73809.1); putative transport protein 796314 abrB 588858000950 abrB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005236448.1 795268 R 588858 CDS YP_005236449.1 378449090 complement(796451..797734) 1 NC_016856.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 797734 gltA 588858000951 gltA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S type II citrate synthase YP_005236449.1 796451 R 588858 CDS YP_005236450.1 378449091 797694..798080 1 NC_016856.1 putative inner membrane protein 798080 588858000952 STM14_0850 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236450.1 797694 D 588858 CDS YP_005236451.1 378449092 798489..798878 1 NC_016856.1 similar to Escherichia coli succinate dehydrogenase; cytochrome b556 (AAC73815.1); succinate dehydrogenase cytochrome b556 large membrane subunit 798878 sdhC 588858000953 sdhC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S succinate dehydrogenase cytochrome b556 large membrane subunit YP_005236451.1 798489 D 588858 CDS YP_005236452.1 378449093 798872..799219 1 NC_016856.1 similar to Escherichia coli succinate dehydrogenase; hydrophobic subunit (AAC73816.1); succinate dehydrogenase cytochrome b556 small membrane subunit 799219 sdhD 588858000954 sdhD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S succinate dehydrogenase cytochrome b556 small membrane subunit YP_005236452.1 798872 D 588858 CDS YP_005236453.1 378449094 799219..800985 1 NC_016856.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 800985 sdhA 588858000955 sdhA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S succinate dehydrogenase flavoprotein subunit YP_005236453.1 799219 D 588858 CDS YP_005236454.1 378449095 800999..801718 1 NC_016856.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 801718 sdhB 588858000956 sdhB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S succinate dehydrogenase iron-sulfur subunit YP_005236454.1 800999 D 588858 CDS YP_005236455.1 378449096 802242..805043 1 NC_016856.1 kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth; alpha-ketoglutarate decarboxylase 805043 kgd 588858000957 kgd Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S alpha-ketoglutarate decarboxylase YP_005236455.1 802242 D 588858 CDS YP_005236456.1 378449097 805058..806266 1 NC_016856.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide acetyltransferase 806266 sucB 588858000958 sucB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dihydrolipoamide acetyltransferase YP_005236456.1 805058 D 588858 CDS YP_005236457.1 378449098 806408..807574 1 NC_016856.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 807574 sucC 588858000959 sucC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S succinyl-CoA synthetase subunit beta YP_005236457.1 806408 D 588858 CDS YP_005236458.1 378449099 807574..808443 1 NC_016856.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 808443 sucD 588858000960 sucD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S succinyl-CoA synthetase subunit alpha YP_005236458.1 807574 D 588858 CDS YP_005236459.1 378449100 808472..808597 1 NC_016856.1 hypothetical protein 808597 588858000961 STM14_0859 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236459.1 808472 D 588858 CDS YP_005236460.1 378449101 complement(809819..809962) 1 NC_016856.1 hypothetical protein 809962 588858000962 STM14_0860 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236460.1 809819 R 588858 CDS YP_005236461.1 378449102 810026..811594 1 NC_016856.1 similar to Escherichia coli cytochrome d terminal oxidase; polypeptide subunit I (AAC73827.1); cytochrome d terminal oxidase polypeptide subunit I 811594 cydA 588858000963 cydA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome d terminal oxidase polypeptide subunit I YP_005236461.1 810026 D 588858 CDS YP_005236462.1 378449103 811610..812749 1 NC_016856.1 similar to Escherichia coli cytochrome d terminal oxidase polypeptide subunit II (AAC73828.1); cytochrome d terminal oxidase polypeptide subunit II 812749 cydB 588858000964 cydB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome d terminal oxidase polypeptide subunit II YP_005236462.1 811610 D 588858 CDS YP_005236463.1 378449104 812764..812877 1 NC_016856.1 putative outer membrane lipoprotein 812877 ybgT 588858000965 ybgT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005236463.1 812764 D 588858 CDS YP_005236464.1 378449105 812877..813017 1 NC_016856.1 hypothetical protein 813017 588858000966 STM14_0864 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236464.1 812877 D 588858 CDS YP_005236465.1 378449106 813014..813295 1 NC_016856.1 hypothetical protein 813295 ybgE 588858000967 ybgE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236465.1 813014 D 588858 CDS YP_005236466.1 378449107 813524..813928 1 NC_016856.1 catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; acyl-CoA thioester hydrolase YbgC 813928 ybgC 588858000968 ybgC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acyl-CoA thioester hydrolase YbgC YP_005236466.1 813524 D 588858 CDS YP_005236467.1 378449108 813925..814617 1 NC_016856.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ 814617 tolQ 588858000969 tolQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S colicin uptake protein TolQ YP_005236467.1 813925 D 588858 CDS YP_005236468.1 378449109 814621..815049 1 NC_016856.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 815049 tolR 588858000970 tolR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S colicin uptake protein TolR YP_005236468.1 814621 D 588858 CDS YP_005236469.1 378449110 815114..816337 1 NC_016856.1 inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins; cell envelope integrity inner membrane protein TolA 816337 tolA 588858000971 tolA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell envelope integrity inner membrane protein TolA YP_005236469.1 815114 D 588858 CDS YP_005236470.1 378449111 816461..817753 1 NC_016856.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 817753 tolB 588858000972 tolB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S translocation protein TolB YP_005236470.1 816461 D 588858 CDS YP_005236471.1 378449112 817788..818312 1 NC_016856.1 similar to Escherichia coli peptidoglycan-associated lipoprotein (AAC73835.1); tol protein required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA to cytoplasm; peptidoglycan-associated outer membrane lipoprotein 818312 pal 588858000973 pal Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptidoglycan-associated outer membrane lipoprotein YP_005236471.1 817788 D 588858 CDS YP_005236472.1 378449113 818322..819110 1 NC_016856.1 hypothetical protein 819110 ybgF 588858000974 ybgF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236472.1 818322 D 588858 CDS YP_005236473.1 378449114 complement(818715..819254) 1 NC_016856.1 hypothetical protein 819254 588858000975 STM14_0873 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236473.1 818715 R 588858 CDS YP_005236474.1 378449115 complement(820227..820322) 1 NC_016856.1 hypothetical protein 820322 588858000981 STM14_0879 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236474.1 820227 R 588858 CDS YP_005236475.1 378449116 820575..821618 1 NC_016856.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 821618 nadA 588858000982 nadA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S quinolinate synthetase YP_005236475.1 820575 D 588858 CDS YP_005236476.1 378449117 821643..822362 1 NC_016856.1 PNUC protein (SW:PNUC_SALTY); NMN family; nucleoside/purine/pyrimidine transporter 822362 pnuC 588858000983 pnuC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nucleoside/purine/pyrimidine transporter YP_005236476.1 821643 D 588858 CDS YP_005236477.1 378449118 complement(822359..823297) 1 NC_016856.1 involved in zinc efflux across the cytoplasmic membrane; zinc transporter ZitB 823297 ybgR 588858000984 ybgR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S zinc transporter ZitB YP_005236477.1 822359 R 588858 CDS YP_005236478.1 378449119 complement(823408..823794) 1 NC_016856.1 similar to Escherichia coli putative homeobox protein (AAC73840.1); hypothetical protein 823794 ybgS 588858000985 ybgS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236478.1 823408 R 588858 CDS YP_005236479.2 410023161 824114..825166 1 NC_016856.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 825166 aroG 588858000986 aroG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phospho-2-dehydro-3-deoxyheptonate aldolase YP_005236479.2 824114 D 588858 CDS YP_005236480.1 378449121 complement(825260..825805) 1 NC_016856.1 similar to Escherichia coli fumarase B; fumarate hydratase class I; anaerobic isozyme (AAC77083.1); fumarate hydratase 825805 588858000987 STM14_0885 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fumarate hydratase YP_005236480.1 825260 R 588858 CDS YP_005236481.1 378449122 complement(825820..826665) 1 NC_016856.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 826665 588858000988 STM14_0886 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fumarate hydratase YP_005236481.1 825820 R 588858 CDS YP_005236482.1 378449123 826795..827685 1 NC_016856.1 similar to Escherichia coli cyn operon positive regulator (AAC73441.1); LysR family; transcriptional regulator 827685 588858000989 STM14_0887 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator YP_005236482.1 826795 D 588858 CDS YP_005236483.1 378449124 complement(827686..828669) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC77283.1); LysR family; transcriptional regulator 828669 588858000990 STM14_0888 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator YP_005236483.1 827686 R 588858 CDS YP_005236484.1 378449125 828913..830160 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC75352.1); putative cation transporter 830160 588858000991 STM14_0889 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cation transporter YP_005236484.1 828913 D 588858 CDS YP_005236485.1 378449126 830210..830455 1 NC_016856.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 830455 dcoC 588858000992 dcoC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S oxaloacetate decarboxylase subunit gamma YP_005236485.1 830210 D 588858 CDS YP_005236486.1 378449127 832259..833560 1 NC_016856.1 oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY); oxaloacetate decarboxylase subunit beta 833560 dcoB 588858000994 dcoB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S oxaloacetate decarboxylase subunit beta YP_005236486.1 832259 D 588858 CDS YP_005236487.1 378449128 833679..834377 1 NC_016856.1 putative cytoplasmic protein 834377 588858000995 STM14_0893 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236487.1 833679 D 588858 CDS YP_005236488.1 378449129 834757..835836 1 NC_016856.1 similar to Escherichia coli ferric enterobactin transport (AAC73691.1); putative ABC transport protein 835836 588858000996 STM14_0894 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transport protein YP_005236488.1 834757 D 588858 CDS YP_005236489.1 378449130 835836..836612 1 NC_016856.1 similar to Escherichia coli ATP-binding component of ferric enterobactin transport (AAC73689.1); putative ABC-type cobalamin/Fe3+-siderophore transport component 836612 588858000997 STM14_0895 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type cobalamin/Fe3+-siderophore transport component YP_005236489.1 835836 D 588858 CDS YP_005236490.1 378449131 complement(836703..837455) 1 NC_016856.1 catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 837455 gpmA 588858000998 gpmA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoglyceromutase YP_005236490.1 836703 R 588858 CDS YP_005236491.1 378449132 complement(837473..837664) 1 NC_016856.1 hypothetical protein 837664 588858000999 STM14_0897 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236491.1 837473 R 588858 CDS YP_005236492.1 378449133 complement(837679..838719) 1 NC_016856.1 catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose; aldose 1-epimerase 838719 galM 588858001000 galM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aldose 1-epimerase YP_005236492.1 837679 R 588858 CDS YP_005236493.1 378449134 complement(838713..839861) 1 NC_016856.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 839861 galK 588858001001 galK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S galactokinase YP_005236493.1 838713 R 588858 CDS YP_005236494.1 378449135 complement(839864..840910) 1 NC_016856.1 catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase 840910 galT 588858001002 galT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S galactose-1-phosphate uridylyltransferase YP_005236494.1 839864 R 588858 CDS YP_005236495.1 378449136 complement(840921..841937) 1 NC_016856.1 UDP-glucose 4-epimerase (SW:GALE_SALTY); UDP-galactose-4-epimerase 841937 galE 588858001003 galE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UDP-galactose-4-epimerase YP_005236495.1 840921 R 588858 CDS YP_005236496.1 378449137 complement(842160..843068) 1 NC_016856.1 putative inner membrane protein 843068 588858001004 STM14_0902 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236496.1 842160 R 588858 CDS YP_005236497.1 378449138 843123..843230 1 NC_016856.1 hypothetical protein 843230 588858001005 STM14_0903 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236497.1 843123 D 588858 CDS YP_005236498.1 378449139 complement(843239..844714) 1 NC_016856.1 contains 2 ATP-binding cassettes; involved in the transport of molybdenum; putative molybdenum transport ATP-binding protein ModF 844714 modF 588858001006 modF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative molybdenum transport ATP-binding protein ModF YP_005236498.1 843239 R 588858 CDS YP_005236499.1 378449140 complement(844782..845570) 1 NC_016856.1 represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; DNA-binding transcriptional regulator ModE 845570 modE 588858001007 modE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator ModE YP_005236499.1 844782 R 588858 CDS YP_005236500.1 378449141 845597..845848 1 NC_016856.1 hypothetical protein 845848 588858001008 STM14_0906 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236500.1 845597 D 588858 CDS YP_005236501.1 378449142 846015..846788 1 NC_016856.1 with ModCB is involved in the high-affinity transport of molybdate; molybdate transporter periplasmic protein 846788 modA 588858001009 modA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S molybdate transporter periplasmic protein YP_005236501.1 846015 D 588858 CDS YP_005236502.1 378449143 846788..847477 1 NC_016856.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease 847477 modB 588858001010 modB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S molybdate ABC transporter permease YP_005236502.1 846788 D 588858 CDS YP_005236503.1 378449144 847480..848538 1 NC_016856.1 Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein 848538 modC 588858001011 modC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S molybdate transporter ATP-binding protein YP_005236503.1 847480 D 588858 CDS YP_005236504.1 378449145 complement(848539..849357) 1 NC_016856.1 YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily; phosphotransferase 849357 ybhA 588858001012 ybhA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphotransferase YP_005236504.1 848539 R 588858 CDS YP_005236505.1 378449146 849521..850516 1 NC_016856.1 catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase 850516 ybhE 588858001013 ybhE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 6-phosphogluconolactonase YP_005236505.1 849521 D 588858 CDS YP_005236506.1 378449147 complement(850660..851943) 1 NC_016856.1 outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family; putative pectinesterase 851943 ybhC 588858001014 ybhC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative pectinesterase YP_005236506.1 850660 R 588858 CDS YP_005236507.1 378449148 852181..853404 1 NC_016856.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 853404 hutI 588858001015 hutI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S imidazolonepropionase YP_005236507.1 852181 D 588858 CDS YP_005236508.1 378449149 853401..854342 1 NC_016856.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 854342 hutG 588858001016 hutG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S formimidoylglutamase YP_005236508.1 853401 D 588858 CDS YP_005236509.1 378449150 854387..855112 1 NC_016856.1 similar to Escherichia coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1); histidine utilization repressor 855112 hutC 588858001017 hutC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S histidine utilization repressor YP_005236509.1 854387 D 588858 CDS YP_005236510.1 378449151 856996..858516 1 NC_016856.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 858516 hutH 588858001019 hutH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S histidine ammonia-lyase YP_005236510.1 856996 D 588858 CDS YP_005236511.1 378449152 complement(858601..859077) 1 NC_016856.1 YbhB; similar to rat and human kinase inhibitory proteins; putative kinase inhibitor protein 859077 ybhB 588858001020 ybhB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative kinase inhibitor protein YP_005236511.1 858601 R 588858 CDS YP_005236512.1 378449153 complement(859135..860424) 1 NC_016856.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 860424 bioA 588858001021 bioA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_005236512.1 859135 R 588858 CDS YP_005236513.1 378449154 860511..861551 1 NC_016856.1 similar to Escherichia coli biotin synthesis (AAC73862.1); biotin synthetase 861551 bioB 588858001022 bioB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S biotin synthetase YP_005236513.1 860511 D 588858 CDS YP_005236514.1 378449155 861548..862705 1 NC_016856.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 862705 bioF 588858001023 bioF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 8-amino-7-oxononanoate synthase YP_005236514.1 861548 D 588858 CDS YP_005236515.1 378449156 862689..863444 1 NC_016856.1 putative methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth; biotin biosynthesis protein BioC 863444 bioC 588858001024 bioC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S biotin biosynthesis protein BioC YP_005236515.1 862689 D 588858 CDS YP_005236516.1 378449157 863437..864123 1 NC_016856.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 864123 bioD_1 588858001025 bioD_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dithiobiotin synthetase YP_005236516.1 863437 D 588858 CDS YP_005236517.1 378449158 864209..864493 1 NC_016856.1 hypothetical protein 864493 588858001026 STM14_0924 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236517.1 864209 D 588858 CDS YP_005236518.1 378449159 864550..864777 1 NC_016856.1 hypothetical protein 864777 588858001027 STM14_0925 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236518.1 864550 D 588858 CDS YP_005236519.1 378449160 864774..866795 1 NC_016856.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 866795 uvrB 588858001028 uvrB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S excinuclease ABC subunit B YP_005236519.1 864774 D 588858 CDS YP_005236520.1 378449161 867104..867277 1 NC_016856.1 putative cytoplasmic protein 867277 588858001029 STM14_927 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236520.1 867104 D 588858 CDS YP_005236521.1 378449162 867285..869582 1 NC_016856.1 leucine-rich repeat protein SlrP (gi|5107020); secreted by SPI-1; type III secretion; hypothetical protein 869582 slrP 588858001030 slrP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236521.1 867285 D 588858 CDS YP_005236522.1 378449163 complement(869674..870582) 1 NC_016856.1 similar to Escherichia coli putative structural protein (AAC73867.1); putative cytoplasmic protein 870582 ybhK 588858001031 ybhK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236522.1 869674 R 588858 CDS YP_005236523.1 378449164 870979..871968 1 NC_016856.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 871968 moaA 588858001032 moaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S molybdenum cofactor biosynthesis protein A YP_005236523.1 870979 D 588858 CDS YP_005236524.1 378449165 871990..872502 1 NC_016856.1 similar to Escherichia coli molybdopterin biosynthetic protein B (AAC73869.1); molybdopterin biosynthetic protein B 872502 moaB 588858001033 moaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S molybdopterin biosynthetic protein B YP_005236524.1 871990 D 588858 CDS YP_005236525.1 378449166 872505..872990 1 NC_016856.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein C 872990 moaC 588858001034 moaC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S molybdenum cofactor biosynthesis protein C YP_005236525.1 872505 D 588858 CDS YP_005236526.1 378449167 872983..873228 1 NC_016856.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 873228 moaD 588858001035 moaD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S molybdopterin synthase small subunit YP_005236526.1 872983 D 588858 CDS YP_005236527.1 378449168 873230..873682 1 NC_016856.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase large subunit 873682 moaE 588858001036 moaE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S molybdopterin synthase large subunit YP_005236527.1 873230 D 588858 CDS YP_005236528.1 378449169 873730..874434 1 NC_016856.1 putative permease 874434 ybhL 588858001037 ybhL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005236528.1 873730 D 588858 CDS YP_005236529.1 378449170 874479..874667 1 NC_016856.1 hypothetical protein 874667 588858001038 STM14_936 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236529.1 874479 D 588858 CDS YP_005236530.1 378449171 874624..875082 1 NC_016856.1 transposase for insertion sequence element IS200 (SW:T200_SALTY); transposase 875082 tnpA_2 588858001039 tnpA_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transposase YP_005236530.1 874624 D 588858 CDS YP_005236531.1 378449172 875292..875999 1 NC_016856.1 putative integral membrane protein 875999 ybhM 588858001040 ybhM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative integral membrane protein YP_005236531.1 875292 D 588858 CDS YP_005236532.1 378449173 876023..876631 1 NC_016856.1 putative inner membrane protein 876631 588858001041 STM14_939 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236532.1 876023 D 588858 CDS YP_005236533.1 378449174 876639..877199 1 NC_016856.1 putative inner membrane protein 877199 588858001042 STM14_940 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236533.1 876639 D 588858 CDS YP_005236534.1 378449175 complement(877202..878164) 1 NC_016856.1 hypothetical protein 878164 ybhN 588858001043 ybhN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236534.1 877202 R 588858 CDS YP_005236535.1 378449176 complement(878164..879405) 1 NC_016856.1 similar to Escherichia coli putative synthetase (AAC73876.1); CL synthase; cardiolipin synthase 2 879405 ybhO 588858001044 ybhO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cardiolipin synthase 2 YP_005236535.1 878164 R 588858 CDS YP_005236536.1 378449177 complement(879402..880160) 1 NC_016856.1 putative cytoplasmic protein 880160 ybhP 588858001045 ybhP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236536.1 879402 R 588858 CDS YP_005236537.1 378449178 880293..880703 1 NC_016856.1 putative inner membrane protein 880703 ybhQ 588858001046 ybhQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236537.1 880293 D 588858 CDS YP_005236538.1 378449179 complement(880665..881771) 1 NC_016856.1 putative ABC superfamily membrane protein; putative transport protein 881771 ybhR 588858001047 ybhR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005236538.1 880665 R 588858 CDS YP_005236539.1 378449180 complement(881747..881884) 1 NC_016856.1 hypothetical protein 881884 588858001048 STM14_946 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236539.1 881747 R 588858 CDS YP_005236540.1 378449181 complement(881887..883017) 1 NC_016856.1 putative ABC superfamily membrane protein; putative transport protein 883017 ybhS 588858001049 ybhS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005236540.1 881887 R 588858 CDS YP_005236541.1 378449182 complement(883010..884746) 1 NC_016856.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC73881.1); putative ABC-type multidrug transport system ATPase component 884746 ybhF 588858001050 ybhF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type multidrug transport system ATPase component YP_005236541.1 883010 R 588858 CDS YP_005236542.1 378449183 complement(884739..885734) 1 NC_016856.1 similar to Escherichia coli putative membrane protein (AAC73882.1); predicted cation efflux pump; hypothetical protein 885734 588858001051 STM14_949 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236542.1 884739 R 588858 CDS YP_005236543.1 378449184 complement(885734..886408) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator (AAC73883.1); TetR/AcrR family; putative DNA-binding transcriptional regulator 886408 ybiH 588858001052 ybiH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA-binding transcriptional regulator YP_005236543.1 885734 R 588858 CDS YP_005236544.1 378449185 886638..888002 1 NC_016856.1 this helicase is not essential cell growth; ATP-dependent RNA helicase RhlE 888002 rhlE 588858001053 rhlE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-dependent RNA helicase RhlE YP_005236544.1 886638 D 588858 CDS YP_005236545.1 378449186 complement(888006..888110) 1 NC_016856.1 hypothetical protein 888110 588858001054 STM14_952 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236545.1 888006 R 588858 CDS YP_005236546.1 378449187 888210..890354 1 NC_016856.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 890354 dinG 588858001055 dinG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-dependent DNA helicase DinG YP_005236546.1 888210 D 588858 CDS YP_005236547.1 378449188 890384..891358 1 NC_016856.1 similar to Escherichia coli putative enzyme (AAC73887.1); hypothetical protein 891358 ybiB 588858001056 ybiB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236547.1 890384 D 588858 CDS YP_005236548.1 378449189 complement(891514..891774) 1 NC_016856.1 hypothetical protein 891774 ybiJ 588858001057 ybiJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236548.1 891514 R 588858 CDS YP_005236549.1 378449190 891948..892067 1 NC_016856.1 hypothetical protein 892067 588858001058 STM14_956 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236549.1 891948 D 588858 CDS YP_005236550.1 378449191 complement(892059..892325) 1 NC_016856.1 putative DnaK suppressor protein; hypothetical protein 892325 ybiI 588858001059 ybiI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236550.1 892059 R 588858 CDS YP_005236551.1 378449192 complement(892325..892444) 1 NC_016856.1 hypothetical protein 892444 588858001060 STM14_958 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236551.1 892325 R 588858 CDS YP_005236552.1 378449193 892530..893456 1 NC_016856.1 putative SAM-dependent methyltransferase 893456 ybiN 588858001061 ybiN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative SAM-dependent methyltransferase YP_005236552.1 892530 D 588858 CDS YP_005236553.1 378449194 complement(893453..895675) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC73895.1); hypothetical protein 895675 ybiO 588858001062 ybiO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236553.1 893453 R 588858 CDS YP_005236554.1 378449195 895674..895811 1 NC_016856.1 hypothetical protein 895811 588858001063 STM14_961 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236554.1 895674 D 588858 CDS YP_005236555.1 378449196 complement(895794..896516) 1 NC_016856.1 similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein 896516 glnQ 588858001064 glnQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamine ABC transporter ATP-binding protein YP_005236555.1 895794 R 588858 CDS YP_005236556.1 378449197 complement(896513..897172) 1 NC_016856.1 similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease 897172 glnP 588858001065 glnP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamine ABC transporter permease YP_005236556.1 896513 R 588858 CDS YP_005236557.1 378449198 complement(897316..898062) 1 NC_016856.1 similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter periplasmic protein 898062 glnH 588858001066 glnH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamine ABC transporter periplasmic protein YP_005236557.1 897316 R 588858 CDS YP_005236558.1 378449199 complement(898059..898181) 1 NC_016856.1 hypothetical protein 898181 588858001067 STM14_965 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236558.1 898059 R 588858 CDS YP_005236559.1 378449200 complement(898539..899042) 1 NC_016856.1 binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA starvation/stationary phase protection protein Dps 899042 dps 588858001068 dps Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA starvation/stationary phase protection protein Dps YP_005236559.1 898539 R 588858 CDS YP_005236560.1 378449201 complement(899158..899316) 1 NC_016856.1 hypothetical protein 899316 588858001069 STM14_967 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236560.1 899158 R 588858 CDS YP_005236561.1 378449202 complement(899345..900232) 1 NC_016856.1 hypothetical protein in dps-ompX intergenic region (SW:YBIF_SALTY); threonine and homoserine efflux system 900232 ybiF 588858001070 ybiF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S threonine and homoserine efflux system YP_005236561.1 899345 R 588858 CDS YP_005236562.1 378449203 complement(900254..900415) 1 NC_016856.1 hypothetical protein 900415 588858001071 STM14_969 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236562.1 900254 R 588858 CDS YP_005236563.1 378449204 complement(900375..900506) 1 NC_016856.1 hypothetical protein 900506 588858001072 STM14_970 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236563.1 900375 R 588858 CDS YP_005236564.1 378449205 900586..901101 1 NC_016856.1 OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; outer membrane protein X 901101 ompX 588858001073 ompX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane protein X YP_005236564.1 900586 D 588858 CDS YP_005236565.1 378449206 complement(901164..902744) 1 NC_016856.1 similar to Escherichia coli putative enzyme (AAC73902.1); putative integral membrane protein 902744 ybiP 588858001074 ybiP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative integral membrane protein YP_005236565.1 901164 R 588858 CDS YP_005236566.1 378449207 902910..903080 1 NC_016856.1 hypothetical protein 903080 588858001075 STM14_973 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236566.1 902910 D 588858 CDS YP_005236567.1 378449208 complement(903009..903137) 1 NC_016856.1 hypothetical protein 903137 588858001076 STM14_974 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236567.1 903009 R 588858 CDS YP_005236568.1 378449209 903323..903796 1 NC_016856.1 Transcriptional regulator that represses the manganese transporter MntH when manganese is present; manganese transport regulator MntR 903796 588858001077 STM14_975 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S manganese transport regulator MntR YP_005236568.1 903323 D 588858 CDS YP_005236569.1 378449210 903793..904905 1 NC_016856.1 putative di-/tricarboxylate transporter; putative transporter 904905 ybiR 588858001078 ybiR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transporter YP_005236569.1 903793 D 588858 CDS YP_005236570.1 378449211 complement(904949..905869) 1 NC_016856.1 hypothetical protein 905869 ybiS 588858001079 ybiS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236570.1 904949 R 588858 CDS YP_005236571.1 378449212 906088..907680 1 NC_016856.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC73907.1); contains duplicated ATPase domain; putative ABC transporter ATPase component 907680 ybiT 588858001080 ybiT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter ATPase component YP_005236571.1 906088 D 588858 CDS YP_005236572.1 378449213 908136..909032 1 NC_016856.1 C-terminus is similar to N-terminus of some pyridine nucleotide transhydrogenase; putative inner membrane protein 909032 588858001081 STM14_979 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236572.1 908136 D 588858 CDS YP_005236573.1 378449214 complement(909061..909780) 1 NC_016856.1 would extend upstream except for stop codon; putative N-terminally truncated hydrolase; HAD superfamily; putative hydrolase 909780 ybiV(2) 588858001082 ybiV(2) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrolase YP_005236573.1 909061 R 588858 CDS YP_005236574.1 378449215 complement(909985..911250) 1 NC_016856.1 putative cytoplasmic protein 911250 ybiU 588858001083 ybiU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236574.1 909985 R 588858 CDS YP_005236575.1 378449216 911396..911509 1 NC_016856.1 hypothetical protein 911509 588858001084 STM14_982 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236575.1 911396 D 588858 CDS YP_005236576.1 378449217 911512..912321 1 NC_016856.1 HAD superfamily; putative hydrolase 912321 ybiV(1) 588858001085 ybiV(1) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrolase YP_005236576.1 911512 D 588858 CDS YP_005236577.1 378449218 complement(912399..914831) 1 NC_016856.1 similar to Escherichia coli putative formate acetyltransferase (AAC73910.1); putative pyruvate formate lyase 914831 pflF 588858001086 pflF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative pyruvate formate lyase YP_005236577.1 912399 R 588858 CDS YP_005236578.1 378449219 complement(914837..915736) 1 NC_016856.1 similar to Escherichia coli putative pyruvate formate-lyase 2 activating enzyme (AAC73911.1); putative pyruvate formate lyase activating enzyme 915736 pflE 588858001087 pflE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative pyruvate formate lyase activating enzyme YP_005236578.1 914837 R 588858 CDS YP_005236579.1 378449220 complement(915878..916033) 1 NC_016856.1 hypothetical protein 916033 588858001088 STM14_986 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236579.1 915878 R 588858 CDS YP_005236580.1 378449221 complement(916014..916763) 1 NC_016856.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 916763 moeB 588858001089 moeB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S molybdopterin biosynthesis protein MoeB YP_005236580.1 916014 R 588858 CDS YP_005236581.1 378449222 complement(916763..918004) 1 NC_016856.1 is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; molybdopterin biosynthesis protein MoeA 918004 moeA 588858001090 moeA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S molybdopterin biosynthesis protein MoeA YP_005236581.1 916763 R 588858 CDS YP_005236582.1 378449223 917997..918137 1 NC_016856.1 hypothetical protein 918137 588858001091 STM14_989 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236582.1 917997 D 588858 CDS YP_005236583.1 378449224 918201..919142 1 NC_016856.1 similar to Escherichia coli putative asparaginase (AAC73915.1); L-asparaginase 919142 ybiK 588858001092 ybiK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-asparaginase YP_005236583.1 918201 D 588858 CDS YP_005236584.1 378449225 919153..921024 1 NC_016856.1 with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; glutathione transporter ATP-binding protein 921024 yliA 588858001093 yliA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutathione transporter ATP-binding protein YP_005236584.1 919153 D 588858 CDS YP_005236585.1 378449226 921057..922595 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC73917.1); putative ABC transporter periplasmic binding protein 922595 yliB 588858001094 yliB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter periplasmic binding protein YP_005236585.1 921057 D 588858 CDS YP_005236586.1 378449227 922656..923576 1 NC_016856.1 similar to Escherichia coli putative transport system permease protein (AAC73918.1); putative ABC transporter periplasmic binding protein 923576 yliC 588858001095 yliC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter periplasmic binding protein YP_005236586.1 922656 D 588858 CDS YP_005236587.1 378449228 923579..924490 1 NC_016856.1 similar to Escherichia coli putative transport system permease protein (AAC73919.1); putative ABC transporter inner membrane component 924490 yliD 588858001096 yliD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter inner membrane component YP_005236587.1 923579 D 588858 CDS YP_005236588.1 378449229 complement(924480..924599) 1 NC_016856.1 hypothetical protein 924599 588858001097 STM14_995 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236588.1 924480 R 588858 CDS YP_005236589.1 378449230 complement(924581..925906) 1 NC_016856.1 putative FeS oxidoreductase 925906 yliG 588858001098 yliG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative FeS oxidoreductase YP_005236589.1 924581 R 588858 CDS YP_005236590.1 378449231 925933..926067 1 NC_016856.1 hypothetical protein 926067 588858001099 STM14_997 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236590.1 925933 D 588858 CDS YP_005236591.1 378449232 926137..926520 1 NC_016856.1 BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; biofilm formation regulatory protein BssR 926520 bssR 588858001100 bssR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S biofilm formation regulatory protein BssR YP_005236591.1 926137 D 588858 CDS YP_005236592.1 378449233 926622..926762 1 NC_016856.1 hypothetical protein 926762 588858001101 STM14_999 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236592.1 926622 D 588858 CDS YP_005236593.1 378449234 926970..927134 1 NC_016856.1 hypothetical protein 927134 588858001102 STM14_1000 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236593.1 926970 D 588858 CDS YP_005236594.1 378449235 927233..927748 1 NC_016856.1 putative cytoplasmic protein 927748 588858001103 STM14_1001 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236594.1 927233 D 588858 CDS YP_005236595.1 378449236 927666..928520 1 NC_016856.1 similar to Escherichia coli probable flavoprotein subunit; carnitine metabolism (AAC73152.1); putative electron transfer protein beta subunit 928520 588858001104 STM14_1002 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative electron transfer protein beta subunit YP_005236595.1 927666 D 588858 CDS YP_005236596.1 378449237 928531..929478 1 NC_016856.1 similar to Escherichia coli putative flavoprotein (AAC74768.1); putative electron transfer protein alpha subunit 929478 588858001105 STM14_1003 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative electron transfer protein alpha subunit YP_005236596.1 928531 D 588858 CDS YP_005236597.1 378449238 929772..930935 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC74765.1); putative acyl-CoA dehydrogenase 930935 588858001107 STM14_1005 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative acyl-CoA dehydrogenase YP_005236597.1 929772 D 588858 CDS YP_005236598.1 378449239 complement(931103..931243) 1 NC_016856.1 hypothetical protein 931243 588858001108 STM14_1006 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236598.1 931103 R 588858 CDS YP_005236599.1 378449240 931384..933069 1 NC_016856.1 similar to Escherichia coli flavoprotein; probable electron transport protein (AAC74769.1); putative dehydrogenase 933069 588858001109 STM14_1007 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dehydrogenase YP_005236599.1 931384 D 588858 CDS YP_005236600.1 378449241 complement(933075..933965) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74667.1); LysR family; putative transcriptional regulator 933965 588858001110 STM14_1008 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005236600.1 933075 R 588858 CDS YP_005236601.1 378449242 complement(934230..934655) 1 NC_016856.1 putative inner membrane protein 934655 588858001111 STM14_1009 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236601.1 934230 R 588858 CDS YP_005236602.1 378449243 934780..934917 1 NC_016856.1 hypothetical protein 934917 588858001112 STM14_1010 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236602.1 934780 D 588858 CDS YP_006894087.1 410023235 935002..935682 1 NC_016856.1 hypothetical protein 935682 588858001113 STM14_1011 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_006894087.1 935002 D 588858 CDS YP_005236603.1 378449244 complement(935679..936305) 1 NC_016856.1 similar to Escherichia coli putative transferase (AAC73925.1); putative glutathione S-transferase 936305 yliJ 588858001114 yliJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glutathione S-transferase YP_005236603.1 935679 R 588858 CDS YP_005236604.1 378449245 936549..937751 1 NC_016856.1 penicillin-binding protein 6a; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 937751 dacC 588858001115 dacC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-alanyl-D-alanine carboxypeptidase YP_005236604.1 936549 D 588858 CDS YP_005236605.1 378449246 complement(937796..938554) 1 NC_016856.1 similar to Escherichia coli transcriptional repressor for deo operon, tsx, nupG (AAC73927.1); DeoR family; DNA-binding transcriptional repressor DeoR 938554 deoR 588858001116 deoR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional repressor DeoR YP_005236605.1 937796 R 588858 CDS YP_005236606.1 378449247 complement(938626..939234) 1 NC_016856.1 undecaprenyl pyrophosphate phosphatase 939234 ybjG 588858001117 ybjG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S undecaprenyl pyrophosphate phosphatase YP_005236606.1 938626 R 588858 CDS YP_005236607.1 378449248 939547..940779 1 NC_016856.1 similar to Escherichia coli proton motive force efflux pump (AAC73929.1); multidrug translocase 940779 mdfA 588858001118 mdfA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multidrug translocase YP_005236607.1 939547 D 588858 CDS YP_005236608.1 378449249 complement(940833..941648) 1 NC_016856.1 putative hydrolase 941648 588858001119 STM14_1017 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrolase YP_005236608.1 940833 R 588858 CDS YP_005236609.1 378449250 complement(941645..942856) 1 NC_016856.1 similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC73932.1); putative transport protein/regulator 942856 588858001120 STM14_1018 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein/regulator YP_005236609.1 941645 R 588858 CDS YP_005236610.1 378449251 942902..943027 1 NC_016856.1 hypothetical protein 943027 588858001121 STM14_1019 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236610.1 942902 D 588858 CDS YP_005236611.1 378449252 943024..943644 1 NC_016856.1 similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC73933.1); TetR/Acr family; putative regulatory protein 943644 588858001122 STM14_1020 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005236611.1 943024 D 588858 CDS YP_005236612.1 378449253 complement(943761..945446) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC73934.1); hypothetical protein 945446 588858001123 STM14_1021 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236612.1 943761 R 588858 CDS YP_005236613.1 378449254 945717..946094 1 NC_016856.1 putative inner membrane protein 946094 ybjM 588858001124 ybjM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236613.1 945717 D 588858 CDS YP_005236614.1 378449255 complement(946126..946389) 1 NC_016856.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 946389 grxA 588858001125 grxA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutaredoxin YP_005236614.1 946126 R 588858 CDS YP_005236615.1 378449256 946559..946849 1 NC_016856.1 YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function; hypothetical protein 946849 ybjC 588858001126 ybjC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236615.1 946559 D 588858 CDS YP_005236616.1 378449257 946833..947555 1 NC_016856.1 NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A 947555 mdaA 588858001127 mdaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitroreductase A YP_005236616.1 946833 D 588858 CDS YP_005236617.1 378449258 947613..948515 1 NC_016856.1 responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; ribosomal protein S6 modification protein 948515 rimK 588858001128 rimK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribosomal protein S6 modification protein YP_005236617.1 947613 D 588858 CDS YP_005236618.1 378449259 948612..949088 1 NC_016856.1 similar to Escherichia coli putative sensory transduction regulator (AAC73940.1); putative cytoplasmic protein 949088 ybjN 588858001129 ybjN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236618.1 948612 D 588858 CDS YP_005236619.1 378449260 949437..950549 1 NC_016856.1 similar to Escherichia coli periplasmic putrescine-binding protein; permease protein (AAC73941.1); ABC superfamily periplasmic protein; putrescine ABC transporter periplasmic substrate-binding protein 950549 potF 588858001130 potF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putrescine ABC transporter periplasmic substrate-binding protein YP_005236619.1 949437 D 588858 CDS YP_005236620.1 378449261 950637..951770 1 NC_016856.1 part of the PotFGHI ATP-dependent putrescine transporter; putrescine ABC transporter ATP-binding protein 951770 potG 588858001131 potG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putrescine ABC transporter ATP-binding protein YP_005236620.1 950637 D 588858 CDS YP_005236621.1 378449262 951780..952733 1 NC_016856.1 similar to Escherichia coli putrescine transport protein; permease (AAC73943.1); ABC superfamily membrane protein; putrescine ABC transporter membrane protein 952733 potH 588858001132 potH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putrescine ABC transporter membrane protein YP_005236621.1 951780 D 588858 CDS YP_005236622.1 378449263 952730..953575 1 NC_016856.1 similar to Escherichia coli putrescine transport protein; permease (AAC73944.1); ABC superfamily membrane protein; putrescine ABC transporter membrane protein 953575 potI 588858001133 potI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putrescine ABC transporter membrane protein YP_005236622.1 952730 D 588858 CDS YP_005236623.1 378449264 953649..954122 1 NC_016856.1 putative inner membrane protein 954122 ybjO 588858001134 ybjO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236623.1 953649 D 588858 CDS YP_005236624.1 378449265 954165..955295 1 NC_016856.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 955295 rumB 588858001135 rumB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 23S rRNA methyluridine methyltransferase YP_005236624.1 954165 D 588858 CDS YP_005236625.1 378449266 955378..955569 1 NC_016856.1 hypothetical protein 955569 588858001136 STM14_1034 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236625.1 955378 D 588858 CDS YP_005236626.1 378449267 955578..956921 1 NC_016856.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 956921 ulaA_1 588858001137 ulaA_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S PTS system ascorbate-specific transporter subunit IIC YP_005236626.1 955578 D 588858 CDS YP_005236627.1 378449268 956951..957271 1 NC_016856.1 similar to SgaT from Vibrio; putative inner membrane protein 957271 588858001138 STM14_1036 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236627.1 956951 D 588858 CDS YP_005236628.1 378449269 957281..958768 1 NC_016856.1 similar to Escherichia coli putative sulfatase (AAC76701.1); putative sulfatase 958768 588858001139 STM14_1037 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sulfatase YP_005236628.1 957281 D 588858 CDS YP_005236629.1 378449270 complement(958765..958965) 1 NC_016856.1 hypothetical protein 958965 588858001140 STM14_1038 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236629.1 958765 R 588858 CDS YP_005236630.1 378449271 complement(958987..959718) 1 NC_016856.1 similar to Escherichia coli arginine 3rd transport system periplasmic binding protein (AAC73947.1); ABC superfamily binding protein; arginine transport system component 959718 artJ 588858001141 artJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S arginine transport system component YP_005236630.1 958987 R 588858 CDS YP_005236631.1 378449272 complement(959955..960623) 1 NC_016856.1 with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 960623 artM 588858001142 artM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S arginine transporter permease subunit ArtM YP_005236631.1 959955 R 588858 CDS YP_005236632.1 378449273 complement(960623..961339) 1 NC_016856.1 with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 961339 artQ 588858001143 artQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S arginine transporter permease subunit ArtQ YP_005236632.1 960623 R 588858 CDS YP_005236633.1 378449274 complement(961346..962077) 1 NC_016856.1 similar to Escherichia coli arginine 3rd transport system periplasmic binding protein (AAC73950.1); ABC superfamily binding protein; arginine transport system 962077 artI 588858001144 artI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S arginine transport system YP_005236633.1 961346 R 588858 CDS YP_005236634.1 378449275 complement(962095..962823) 1 NC_016856.1 With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit 962823 artP 588858001145 artP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S arginine transporter ATP-binding subunit YP_005236634.1 962095 R 588858 CDS YP_005236635.1 378449276 complement(963053..963568) 1 NC_016856.1 induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; putative lipoprotein 963568 ybjP 588858001146 ybjP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative lipoprotein YP_005236635.1 963053 R 588858 CDS YP_005236636.1 378449277 963696..964019 1 NC_016856.1 hypothetical protein 964019 orfB 588858001147 orfB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236636.1 963696 D 588858 CDS YP_005236637.1 378449278 964016..964846 1 NC_016856.1 similar to Escherichia coli putative regulator (AAC73954.1); putative aminidase 964846 ybjR 588858001148 ybjR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative aminidase YP_005236637.1 964016 D 588858 CDS YP_005236638.1 378449279 complement(964843..965856) 1 NC_016856.1 similar to Escherichia coli putative nucleotide di-P-sugar epimerase or dehydratase (AAC73955.1); putative nucleoside-diphosphate-sugar epimerase 965856 588858001149 STM14_1047 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative nucleoside-diphosphate-sugar epimerase YP_005236638.1 964843 R 588858 CDS YP_005236639.1 378449280 complement(965952..967385) 1 NC_016856.1 similar to Escherichia coli putative dTDP-glucose enzyme (AAC73956.1); putative nucleoside-diphosphate-sugar epimerase 967385 ybjT 588858001150 ybjT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative nucleoside-diphosphate-sugar epimerase YP_005236639.1 965952 R 588858 CDS YP_005236640.1 378449281 complement(967396..968397) 1 NC_016856.1 low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine; L-threonine aldolase 968397 ltaA 588858001151 ltaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-threonine aldolase YP_005236640.1 967396 R 588858 CDS YP_005236641.1 378449282 complement(968436..970154) 1 NC_016856.1 catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase 970154 poxB 588858001152 poxB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyruvate dehydrogenase YP_005236641.1 968436 R 588858 CDS YP_005236642.1 378449283 complement(970312..971283) 1 NC_016856.1 similar to Escherichia coli putative enzyme (AAC73959.1); hcp gene product; HCP oxidoreductase 971283 hcr 588858001153 hcr Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S HCP oxidoreductase YP_005236642.1 970312 R 588858 CDS YP_005236643.1 378449284 complement(971292..972944) 1 NC_016856.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 972944 hcp 588858001154 hcp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydroxylamine reductase YP_005236643.1 971292 R 588858 CDS YP_005236644.1 378449285 972908..973111 1 NC_016856.1 hypothetical protein 973111 588858001155 STM14_1053 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236644.1 972908 D 588858 CDS YP_005236645.1 378449286 complement(973088..973987) 1 NC_016856.1 similar to Escherichia coli putative surface protein (AAC73961.1); putative inner membrane protein 973987 ybjE 588858001156 ybjE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236645.1 973088 R 588858 CDS YP_005236646.1 378449287 973986..974153 1 NC_016856.1 hypothetical protein 974153 588858001157 STM14_1055 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236646.1 973986 D 588858 CDS YP_005236647.1 378449288 974189..975847 1 NC_016856.1 similar to RecF protein; hypothetical protein 975847 ybjD 588858001158 ybjD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236647.1 974189 D 588858 CDS YP_005236648.1 378449289 complement(975844..976812) 1 NC_016856.1 similar to Escherichia coli putative enzyme (AAC73964.1); VirK-like protein 976812 ybjX 588858001159 ybjX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S VirK-like protein YP_005236648.1 975844 R 588858 CDS YP_005236649.1 378449290 976940..978058 1 NC_016856.1 confers macrolide resistance via active drug efflux; macrolide transporter subunit MacA 978058 ybjY 588858001160 ybjY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S macrolide transporter subunit MacA YP_005236649.1 976940 D 588858 CDS YP_005236650.1 378449291 978055..980001 1 NC_016856.1 with MacA is involved in the export of macrolide; macrolide transporter ATP-binding /permease 980001 ybjZ 588858001161 ybjZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S macrolide transporter ATP-binding /permease YP_005236650.1 978055 D 588858 CDS YP_005236651.1 378449292 complement(980013..980138) 1 NC_016856.1 hypothetical protein 980138 588858001162 STM14_1060 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236651.1 980013 R 588858 CDS YP_005236652.1 378449293 980033..980176 1 NC_016856.1 hypothetical protein 980176 588858001163 STM14_1061 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236652.1 980033 D 588858 CDS YP_005236653.1 378449294 complement(980131..980352) 1 NC_016856.1 similar to Escherichia coli cold shock protein CspA (AAC73967.1); stationary phase-induced; stress response protein 980352 cspD 588858001164 cspD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S stress response protein YP_005236653.1 980131 R 588858 CDS YP_005236654.1 378449295 980676..980996 1 NC_016856.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 980996 clpS 588858001165 clpS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-dependent Clp protease adaptor protein ClpS YP_005236654.1 980676 D 588858 CDS YP_005236655.1 378449296 981027..983303 1 NC_016856.1 ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 983303 clpA 588858001166 clpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-dependent Clp protease ATP-binding subunit YP_005236655.1 981027 D 588858 CDS YP_005236656.1 378449297 983350..983538 1 NC_016856.1 hypothetical protein 983538 588858001167 STM14_1065 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236656.1 983350 D 588858 CDS YP_005236657.1 378449298 983495..983953 1 NC_016856.1 transposase for insertion sequence element IS200 (SW:T200_SALTY); transposase 983953 tnpA_3 588858001168 tnpA_3 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transposase YP_005236657.1 983495 D 588858 CDS YP_005236658.1 378449299 complement(984062..984343) 1 NC_016856.1 hypothetical protein 984343 588858001169 STM14_1067 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236658.1 984062 R 588858 CDS YP_005236659.1 378449300 complement(984416..985099) 1 NC_016856.1 similar to Escherichia coli IS150 putative transposase (AAC76582.1); putative integrase 985099 588858001170 STM14_1068 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative integrase YP_005236659.1 984416 R 588858 CDS YP_005236660.1 378449301 complement(985102..985260) 1 NC_016856.1 hypothetical protein 985260 588858001171 STM14_1069 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236660.1 985102 R 588858 CDS YP_005236661.1 378449302 complement(985270..985671) 1 NC_016856.1 putative cytoplasmic protein 985671 588858001172 STM14_1070 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236661.1 985270 R 588858 CDS YP_005236662.1 378449303 complement(986008..986685) 1 NC_016856.1 similar to slsA in STM (gi|4324613); similar to STM3761; SlsA 986685 588858001174 STM14_1072 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S SlsA YP_005236662.1 986008 R 588858 CDS YP_005236663.1 378449304 complement(986705..987565) 1 NC_016856.1 putative cytoplasmic protein 987565 588858001175 STM14_1073 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236663.1 986705 R 588858 CDS YP_005236664.1 378449305 987674..988585 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73313.1); LysR family; putative transcriptional regulator 988585 588858001176 STM14_1074 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005236664.1 987674 D 588858 CDS YP_005236665.1 378449306 complement(988676..988894) 1 NC_016856.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 988894 infA 588858001177 infA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S translation initiation factor IF-1 YP_005236665.1 988676 R 588858 CDS YP_005236666.1 378449307 complement(988822..989205) 1 NC_016856.1 putative inner membrane protein 989205 588858001178 STM14_1076 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236666.1 988822 R 588858 CDS YP_005236667.1 378449308 complement(989206..989910) 1 NC_016856.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 989910 aat 588858001179 aat Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S leucyl/phenylalanyl-tRNA--protein transferase YP_005236667.1 989206 R 588858 CDS YP_005236668.1 378449309 complement(989955..991676) 1 NC_016856.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 991676 cydC 588858001180 cydC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_005236668.1 989955 R 588858 CDS YP_005236669.1 378449310 complement(991677..993443) 1 NC_016856.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 993443 cydD 588858001181 cydD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cysteine/glutathione ABC transporter membrane/ATP-binding protein YP_005236669.1 991677 R 588858 CDS YP_005236670.1 378449311 complement(993557..994525) 1 NC_016856.1 catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; thioredoxin reductase 994525 trxB 588858001182 trxB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thioredoxin reductase YP_005236670.1 993557 R 588858 CDS YP_005236671.1 378449312 complement(994689..994946) 1 NC_016856.1 hypothetical protein 994946 588858001183 STM14_1081 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236671.1 994689 R 588858 CDS YP_005236672.1 378449313 complement(994867..995142) 1 NC_016856.1 hypothetical protein 995142 588858001184 STM14_1082 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236672.1 994867 R 588858 CDS YP_005236673.1 378449314 995071..995565 1 NC_016856.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 995565 lrp 588858001185 lrp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S leucine-responsive transcriptional regulator YP_005236673.1 995071 D 588858 CDS YP_005236674.1 378449315 995700..999785 1 NC_016856.1 DNA-binding membrane protein required for chromosome resolution and partitioning; DNA translocase FtsK 999785 ftsK 588858001186 ftsK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA translocase FtsK YP_005236674.1 995700 D 588858 CDS YP_005236675.1 378449316 999925..1000539 1 NC_016856.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 1000539 lolA 588858001187 lolA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer-membrane lipoprotein carrier protein YP_005236675.1 999925 D 588858 CDS YP_005236676.1 378449317 1000549..1001892 1 NC_016856.1 similar to Escherichia coli putative polynucleotide enzyme (AAC73978.1); recombination factor protein RarA 1001892 ycaJ 588858001188 ycaJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S recombination factor protein RarA YP_005236676.1 1000549 D 588858 CDS YP_005236677.1 378449318 1001941..1002111 1 NC_016856.1 hypothetical protein 1002111 588858001189 STM14_1087 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236677.1 1001941 D 588858 CDS YP_005236678.1 378449319 1002151..1003443 1 NC_016856.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1003443 serS 588858001190 serS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S seryl-tRNA synthetase YP_005236678.1 1002151 D 588858 CDS YP_005236679.1 378449320 1003680..1006124 1 NC_016856.1 similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit A (AAC73980.1); anaerobic dimethyl sulfoxide reductase subunit A 1006124 dmsA 588858001191 dmsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S anaerobic dimethyl sulfoxide reductase subunit A YP_005236679.1 1003680 D 588858 CDS YP_005236680.1 378449321 1006135..1006752 1 NC_016856.1 similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); anaerobic dimethyl sulfoxide reductase subunit B 1006752 dmsB 588858001192 dmsB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S anaerobic dimethyl sulfoxide reductase subunit B YP_005236680.1 1006135 D 588858 CDS YP_005236681.1 378449322 1006754..1007617 1 NC_016856.1 similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit C (AAC73982.1); anaerobic dimethyl sulfoxide reductase subunit C 1007617 dmsC 588858001193 dmsC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S anaerobic dimethyl sulfoxide reductase subunit C YP_005236681.1 1006754 D 588858 CDS YP_005236682.1 378449323 1007647..1007754 1 NC_016856.1 hypothetical protein 1007754 588858001194 STM14_1092 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236682.1 1007647 D 588858 CDS YP_005236683.1 378449324 complement(1007837..1007968) 1 NC_016856.1 hypothetical protein 1007968 588858001195 STM14_1093 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236683.1 1007837 R 588858 CDS YP_005236684.1 378449325 1007967..1009115 1 NC_016856.1 similar to Escherichia coli putative transport (AAC73984.1); MFS family; MFS family transporter 1009115 ycaD 588858001196 ycaD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S MFS family transporter YP_005236684.1 1007967 D 588858 CDS YP_005236685.1 378449326 1009333..1010754 1 NC_016856.1 similar to Escherichia coli putative transport (AAC73985.1); APC family; putative amino-acid transporter 1010754 ycaM 588858001197 ycaM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative amino-acid transporter YP_005236685.1 1009333 D 588858 CDS YP_005236686.1 378449327 complement(1011047..1011844) 1 NC_016856.1 activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 1011844 pflA 588858001198 pflA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyruvate formate lyase-activating enzyme 1 YP_005236686.1 1011047 R 588858 CDS YP_005236687.1 378449328 complement(1011963..1012289) 1 NC_016856.1 putative cytoplasmic protein 1012289 588858001199 STM14_1097 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236687.1 1011963 R 588858 CDS YP_005236688.1 378449329 1012420..1013379 1 NC_016856.1 SopD-like protein 1013379 588858001200 STM14_1098 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S SopD-like protein YP_005236688.1 1012420 D 588858 CDS YP_005236689.1 378449330 complement(1013455..1015737) 1 NC_016856.1 similar to Escherichia coli formate acetyltransferase 1 (AAC73989.1); induced anaerobically; pyruvate formate lyase I 1015737 pflB 588858001201 pflB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyruvate formate lyase I YP_005236689.1 1013455 R 588858 CDS YP_005236690.2 410023162 complement(1015797..1016612) 1 NC_016856.1 similar to Escherichia coli probable formate transporter; formate channel 1 (AAC73990.1); FNT family; formate transporter 1016612 focA 588858001202 focA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S formate transporter YP_005236690.2 1015797 R 588858 CDS YP_005236691.1 378449332 complement(1017059..1018819) 1 NC_016856.1 putative cytoplasmic protein 1018819 ycaO 588858001203 ycaO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236691.1 1017059 R 588858 CDS YP_005236692.1 378449333 1018831..1018959 1 NC_016856.1 hypothetical protein 1018959 588858001204 STM14_1102 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236692.1 1018831 D 588858 CDS YP_005236693.1 378449334 1018956..1019648 1 NC_016856.1 putative inner membrane protein 1019648 ycaP 588858001205 ycaP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236693.1 1018956 D 588858 CDS YP_005236694.1 378449335 1019641..1019754 1 NC_016856.1 hypothetical protein 1019754 588858001206 STM14_1104 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236694.1 1019641 D 588858 CDS YP_005236695.1 378449336 1019834..1020922 1 NC_016856.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1020922 serC 588858001207 serC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoserine aminotransferase YP_005236695.1 1019834 D 588858 CDS YP_005236696.1 378449337 1020993..1022276 1 NC_016856.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1022276 aroA 588858001208 aroA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-phosphoshikimate 1-carboxyvinyltransferase YP_005236696.1 1020993 D 588858 CDS YP_005236697.1 378449338 1022419..1023180 1 NC_016856.1 similar to Escherichia coli putative heat shock protein (AAC73995.1); has chaperone function; putative Zn-dependent protease 1023180 ycaL 588858001209 ycaL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative Zn-dependent protease YP_005236697.1 1022419 D 588858 CDS YP_005236698.1 378449339 complement(1023127..1023381) 1 NC_016856.1 hypothetical protein 1023381 588858001210 STM14_1108 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236698.1 1023127 R 588858 CDS YP_005236699.1 378449340 1023353..1024036 1 NC_016856.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1024036 cmk 588858001211 cmk Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytidylate kinase YP_005236699.1 1023353 D 588858 CDS YP_005236700.1 378449341 1024150..1025823 1 NC_016856.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1025823 rpsA 588858001212 rpsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S1 YP_005236700.1 1024150 D 588858 CDS YP_005236701.1 378449342 1025979..1026263 1 NC_016856.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1026263 ihfB 588858001213 ihfB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S integration host factor subunit beta YP_005236701.1 1025979 D 588858 CDS YP_005236702.1 378449343 1026487..1028757 1 NC_016856.1 hypothetical protein 1028757 ycaI 588858001214 ycaI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236702.1 1026487 D 588858 CDS YP_005236703.1 378449344 1028794..1030542 1 NC_016856.1 involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease 1030542 msbA 588858001215 msbA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipid transporter ATP-binding/permease YP_005236703.1 1028794 D 588858 CDS YP_005236704.1 378449345 1030539..1031516 1 NC_016856.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1031516 lpxK 588858001216 lpxK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tetraacyldisaccharide 4'-kinase YP_005236704.1 1030539 D 588858 CDS YP_005236705.1 378449346 1031560..1032792 1 NC_016856.1 putative cytoplasmic protein 1032792 ycaQ 588858001217 ycaQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236705.1 1031560 D 588858 CDS YP_005236706.1 378449347 1032844..1033026 1 NC_016856.1 hypothetical protein 1033026 ycaR 588858001218 ycaR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236706.1 1032844 D 588858 CDS YP_005236707.1 378449348 1033023..1033769 1 NC_016856.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1033769 kdsB 588858001219 kdsB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-deoxy-manno-octulosonate cytidylyltransferase YP_005236707.1 1033023 D 588858 CDS YP_005236708.1 378449349 complement(1033792..1033944) 1 NC_016856.1 hypothetical protein 1033944 588858001220 STM14_1118 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236708.1 1033792 R 588858 CDS YP_005236709.1 378449350 1033980..1034873 1 NC_016856.1 hypothetical protein 1034873 588858001221 STM14_1119 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236709.1 1033980 D 588858 CDS YP_005236710.1 378449351 complement(1034853..1035629) 1 NC_016856.1 hypothetical protein 1035629 ycbC 588858001222 ycbC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236710.1 1034853 R 588858 CDS YP_005236711.1 378449352 1035765..1036568 1 NC_016856.1 involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; putative metallothionein SmtA 1036568 smtA 588858001223 smtA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative metallothionein SmtA YP_005236711.1 1035765 D 588858 CDS YP_005236712.1 378449353 1036561..1037883 1 NC_016856.1 acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 1037883 mukF 588858001224 mukF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S condesin subunit F YP_005236712.1 1036561 D 588858 CDS YP_005236713.1 378449354 1037864..1038568 1 NC_016856.1 acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 1038568 mukE 588858001225 mukE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S condesin subunit E YP_005236713.1 1037864 D 588858 CDS YP_005236714.1 378449355 1038568..1043034 1 NC_016856.1 SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB 1043034 mukB 588858001226 mukB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell division protein MukB YP_005236714.1 1038568 D 588858 CDS YP_005236715.1 378449356 1043379..1045220 1 NC_016856.1 similar to Escherichia coli putative amidase (AAC74011.1); hypothetical protein 1045220 ycbB 588858001227 ycbB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236715.1 1043379 D 588858 CDS YP_005236716.1 378449357 1045480..1046028 1 NC_016856.1 putative outer membrane protein 1046028 ycbK 588858001228 ycbK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005236716.1 1045480 D 588858 CDS YP_005236717.1 378449358 1046056..1046703 1 NC_016856.1 putative metallo-beta-lactamase 1046703 ycbL 588858001229 ycbL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative metallo-beta-lactamase YP_005236717.1 1046056 D 588858 CDS YP_005236718.1 378449359 complement(1046765..1047955) 1 NC_016856.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1047955 aspC 588858001230 aspC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aromatic amino acid aminotransferase YP_005236718.1 1046765 R 588858 CDS YP_005236719.1 378449360 complement(1047995..1048126) 1 NC_016856.1 hypothetical protein 1048126 588858001231 STM14_1129 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236719.1 1047995 R 588858 CDS YP_005236720.1 378449361 complement(1048140..1049231) 1 NC_016856.1 outer membrane protein F precursor; porin; (SW:OMPF_SALTY); outer membrane protein F 1049231 ompF 588858001232 ompF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane protein F YP_005236720.1 1048140 R 588858 CDS YP_005236721.1 378449362 1049521..1049673 1 NC_016856.1 hypothetical protein 1049673 588858001233 STM14_1131 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236721.1 1049521 D 588858 CDS YP_005236722.1 378449363 complement(1049838..1051238) 1 NC_016856.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 1051238 asnS 588858001234 asnS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S asparaginyl-tRNA synthetase YP_005236722.1 1049838 R 588858 CDS YP_005236723.1 378449364 complement(1051307..1051426) 1 NC_016856.1 hypothetical protein 1051426 588858001235 STM14_1133 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236723.1 1051307 R 588858 CDS YP_005236724.1 378449365 complement(1051439..1051900) 1 NC_016856.1 similar to Escherichia coli regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system (AAC73975.1); putative leucine response regulator 1051900 588858001236 STM14_1134 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative leucine response regulator YP_005236724.1 1051439 R 588858 CDS YP_005236725.1 378449366 complement(1051897..1052118) 1 NC_016856.1 hypothetical protein 1052118 588858001237 STM14_1135 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236725.1 1051897 R 588858 CDS YP_005236726.1 378449367 1052217..1053431 1 NC_016856.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 1053431 588858001238 STM14_1136 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S diaminopropionate ammonia-lyase YP_005236726.1 1052217 D 588858 CDS YP_005236727.1 378449368 1053504..1053662 1 NC_016856.1 hypothetical protein 1053662 588858001239 STM14_1137 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236727.1 1053504 D 588858 CDS YP_005236728.1 378449369 1053676..1055112 1 NC_016856.1 similar to Escherichia coli inner membrane transport protein (AAC73118.1); Lrp family; putative transcriptional regulator 1055112 588858001240 STM14_1138 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005236728.1 1053676 D 588858 CDS YP_005236729.1 378449370 complement(1055190..1056392) 1 NC_016856.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1056392 pncB 588858001241 pncB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nicotinate phosphoribosyltransferase YP_005236729.1 1055190 R 588858 CDS YP_005236730.1 378449371 complement(1056587..1057879) 1 NC_016856.1 similar to Escherichia coli putative transposase (AAC74651.1); integrase 1057879 588858001242 STM14_1140 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S integrase YP_005236730.1 1056587 R 588858 CDS YP_005236731.1 378449372 complement(1057924..1058172) 1 NC_016856.1 excisionase 1058172 588858001243 STM14_1141 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S excisionase YP_005236731.1 1057924 R 588858 CDS YP_005236732.1 378449373 complement(1058213..1058452) 1 NC_016856.1 hypothetical protein 1058452 588858001244 STM14_1142 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236732.1 1058213 R 588858 CDS YP_005236733.1 378449374 complement(1058495..1059604) 1 NC_016856.1 hypothetical protein AAC26069.1 (gi|7467267); hypothetical protein 1059604 588858001245 STM14_1143 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236733.1 1058495 R 588858 CDS YP_005236734.1 378449375 complement(1059615..1062500) 1 NC_016856.1 similar to exodeoxyribonuclease VIII (gi|7467238); exodeoxyribonuclease 1062500 588858001246 STM14_1144 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S exodeoxyribonuclease YP_005236734.1 1059615 R 588858 CDS YP_005236735.1 378449376 complement(1062627..1062926) 1 NC_016856.1 hypothetical protein 1062926 588858001247 STM14_1145 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236735.1 1062627 R 588858 CDS YP_005236736.1 378449377 complement(1062948..1063106) 1 NC_016856.1 hypothetical protein 1063106 588858001248 STM14_1146 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236736.1 1062948 R 588858 CDS YP_005236737.1 378449378 complement(1063099..1063359) 1 NC_016856.1 hypothetical protein 1063359 588858001249 STM14_1147 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236737.1 1063099 R 588858 CDS YP_005236738.1 378449379 complement(1063409..1063819) 1 NC_016856.1 probable regulatory protein (gi|7467281); regulatory protein 1063819 588858001250 STM14_1148 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S regulatory protein YP_005236738.1 1063409 R 588858 CDS YP_005236739.1 378449380 1063939..1064178 1 NC_016856.1 hypothetical protein 1064178 588858001251 STM14_1149 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236739.1 1063939 D 588858 CDS YP_005236740.1 378449381 1064144..1064518 1 NC_016856.1 probable regulatory protein (gi|7467282); regulatory protein 1064518 588858001252 STM14_1150 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S regulatory protein YP_005236740.1 1064144 D 588858 CDS YP_005236741.1 378449382 1064603..1065586 1 NC_016856.1 probable replication protein (gi|7467283); regulatory protein 1065586 588858001253 STM14_1151 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S regulatory protein YP_005236741.1 1064603 D 588858 CDS YP_005236742.1 378449383 1065589..1066338 1 NC_016856.1 acts to load the DnaB helicase onto the intiation site durning DNA replication; putative replication protein 1066338 588858001254 STM14_1152 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative replication protein YP_005236742.1 1065589 D 588858 CDS YP_005236743.1 378449384 1066349..1066696 1 NC_016856.1 hypothetical protein 1066696 588858001255 STM14_1153 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236743.1 1066349 D 588858 CDS YP_005236744.1 378449385 1066693..1067004 1 NC_016856.1 hypothetical protein 1067004 588858001256 STM14_1154 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236744.1 1066693 D 588858 CDS YP_005236745.1 378449386 1067082..1067372 1 NC_016856.1 hypothetical protein 1067372 588858001257 STM14_1155 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236745.1 1067082 D 588858 CDS YP_005236746.1 378449387 1067664..1067897 1 NC_016856.1 hypothetical protein 1067897 588858001258 STM14_1156 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236746.1 1067664 D 588858 CDS YP_005236747.1 378449388 1068009..1068230 1 NC_016856.1 hypothetical protein 1068230 588858001259 STM14_1157 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236747.1 1068009 D 588858 CDS YP_005236748.1 378449389 1068313..1068915 1 NC_016856.1 hypothetical protein 1068915 588858001260 STM14_1158 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236748.1 1068313 D 588858 CDS YP_005236749.1 378449390 1068921..1069121 1 NC_016856.1 hypothetical protein 1069121 588858001261 STM14_1159 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236749.1 1068921 D 588858 CDS YP_005236750.1 378449391 1069124..1069735 1 NC_016856.1 hypothetical protein 1069735 588858001262 STM14_1160 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236750.1 1069124 D 588858 CDS YP_005236751.1 378449392 1069732..1069878 1 NC_016856.1 hypothetical protein 1069878 588858001263 STM14_1161 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236751.1 1069732 D 588858 CDS YP_005236752.1 378449393 1069868..1070665 1 NC_016856.1 DnaJ family; putative molecular chaperone 1070665 588858001264 STM14_1162 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative molecular chaperone YP_005236752.1 1069868 D 588858 CDS YP_005236753.1 378449394 1070732..1071049 1 NC_016856.1 hypothetical protein 1071049 588858001265 STM14_1163 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236753.1 1070732 D 588858 CDS YP_005236754.1 378449395 1071223..1071348 1 NC_016856.1 hypothetical protein 1071348 588858001266 STM14_1164 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236754.1 1071223 D 588858 CDS YP_005236755.1 378449396 complement(1071484..1071933) 1 NC_016856.1 hypothetical protein 1071933 588858001267 STM14_1165 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236755.1 1071484 R 588858 CDS YP_005236756.1 378449397 complement(1072294..1072980) 1 NC_016856.1 bacteriophage virulence determinant 1072980 gtgA 588858001268 gtgA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bacteriophage virulence determinant YP_005236756.1 1072294 R 588858 CDS YP_005236757.2 410023163 1073250..1073585 1 NC_016856.1 hypothetical protein 1073585 588858001269 STM14_1167 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236757.2 1073250 D 588858 CDS YP_005236758.1 378449399 1073569..1074021 1 NC_016856.1 similar to Escherichia coli bacteriophage lambda lysozyme (AAC73656.1); lysozyme 1074021 588858001270 STM14_1168 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lysozyme YP_005236758.1 1073569 D 588858 CDS YP_005236759.1 378449400 1074039..1074518 1 NC_016856.1 bacteriophage ES18 gp15 protein (gi|1143595); hypothetical protein 1074518 588858001271 STM14_1169 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236759.1 1074039 D 588858 CDS YP_005236760.1 378449401 1074726..1075259 1 NC_016856.1 hypothetical protein 1075259 588858001272 STM14_1170 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236760.1 1074726 D 588858 CDS YP_005236761.1 378449402 1075216..1077354 1 NC_016856.1 hypothetical protein 1077354 588858001273 STM14_1171 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236761.1 1075216 D 588858 CDS YP_005236762.1 378449403 1077554..1079101 1 NC_016856.1 phage portal protein, lambda family 1079101 588858001274 STM14_1172 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage portal protein, lambda family YP_005236762.1 1077554 D 588858 CDS YP_005236763.2 410023164 1079016..1081106 1 NC_016856.1 similar to Escherichia coli ATP-dependent proteolytic subunit of ClpA-ClpP serine protease; heat shock protein F21.5 (AAC73540.1); Clp protease-like protein 1081106 588858001275 STM14_1173 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Clp protease-like protein YP_005236763.2 1079016 D 588858 CDS YP_005236764.1 378449405 1081197..1081520 1 NC_016856.1 putative RecA/RadA recombinase 1081520 588858001276 STM14_1174 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative RecA/RadA recombinase YP_005236764.1 1081197 D 588858 CDS YP_005236765.1 378449406 1081513..1081812 1 NC_016856.1 ATP-binding sugar transporter-like protein 1081812 588858001277 STM14_1175 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-binding sugar transporter-like protein YP_005236765.1 1081513 D 588858 CDS YP_005236766.1 378449407 1081793..1082359 1 NC_016856.1 minor tail protein 1082359 588858001278 STM14_1176 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S minor tail protein YP_005236766.1 1081793 D 588858 CDS YP_005236767.1 378449408 1082356..1082757 1 NC_016856.1 minor tail protein 1082757 588858001279 STM14_1177 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S minor tail protein YP_005236767.1 1082356 D 588858 CDS YP_005236768.1 378449409 1082769..1083518 1 NC_016856.1 major tail protein 1083518 588858001280 STM14_1178 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S major tail protein YP_005236768.1 1082769 D 588858 CDS YP_005236769.1 378449410 1083564..1083962 1 NC_016856.1 minor tail protein 1083962 588858001281 STM14_1179 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S minor tail protein YP_005236769.1 1083564 D 588858 CDS YP_005236770.1 378449411 1083959..1084288 1 NC_016856.1 minor tail protein 1084288 588858001282 STM14_1180 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S minor tail protein YP_005236770.1 1083959 D 588858 CDS YP_005236771.1 378449412 1084368..1087355 1 NC_016856.1 similar to lambda phage H tail component (gi|2232364); minor tail protein 1087355 588858001283 STM14_1181 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S minor tail protein YP_005236771.1 1084368 D 588858 CDS YP_005236772.1 378449413 1087352..1087684 1 NC_016856.1 similar to lambda phage M tail component (gi|2232363); minor tail protein 1087684 588858001284 STM14_1182 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S minor tail protein YP_005236772.1 1087352 D 588858 CDS YP_005236773.1 378449414 1087783..1088280 1 NC_016856.1 similar to OmpX (gi|2232362); attachment/invasion protein 1088280 588858001285 STM14_1183 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S attachment/invasion protein YP_005236773.1 1087783 D 588858 CDS YP_005236774.1 378449415 complement(1088397..1088930) 1 NC_016856.1 superoxide dismutase CuZn precursor (SW:SODC_SALTY); important virulence function; implicated in defence against macrophage killing; superoxide dismutase precursor 1088930 sodC_1 588858001286 sodC_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S superoxide dismutase precursor YP_005236774.1 1088397 R 588858 CDS YP_005236775.1 378449416 1089020..1089715 1 NC_016856.1 similar to lambda phage L tail component (gi|2232360); minor tail protein 1089715 588858001287 STM14_1185 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S minor tail protein YP_005236775.1 1089020 D 588858 CDS YP_005236776.1 378449417 1089725..1090462 1 NC_016856.1 tail assembly protein 1090462 588858001288 STM14_1186 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tail assembly protein YP_005236776.1 1089725 D 588858 CDS YP_005236777.1 378449418 1090360..1091064 1 NC_016856.1 tail assembly protein 1091064 588858001289 STM14_1187 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tail assembly protein YP_005236777.1 1090360 D 588858 CDS YP_005236778.1 378449419 1091136..1094486 1 NC_016856.1 similar to phage lambda protein J; host specificity protein J 1094486 588858001290 STM14_1188 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S host specificity protein J YP_005236778.1 1091136 D 588858 CDS YP_005236779.1 378449420 1094525..1094767 1 NC_016856.1 hypothetical protein 1094767 588858001291 STM14_1189 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236779.1 1094525 D 588858 CDS YP_005236780.1 378449421 1094821..1097259 1 NC_016856.1 similar to Escherichia coli putative membrane protein (AAC74454.1); tail fiber protein 1097259 588858001292 STM14_1190 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tail fiber protein YP_005236780.1 1094821 D 588858 CDS YP_005236781.1 378449422 1097259..1097840 1 NC_016856.1 similar to tail fiber assembly protein (gi|8927433); tail fiber assembly like-protein 1097840 588858001293 STM14_1191 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tail fiber assembly like-protein YP_005236781.1 1097259 D 588858 CDS YP_005236782.1 378449423 complement(1097844..1097951) 1 NC_016856.1 tail fiber assembly protein 1097951 588858001294 STM14_1192 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tail fiber assembly protein YP_005236782.1 1097844 R 588858 CDS YP_005236783.1 378449424 1098316..1099284 1 NC_016856.1 secreted effector I (gi|8927434); secreted by SPI-2; colocalizes with host polymerizing actin cytoskeleton; secreted effector protein 1099284 sseI 588858001295 sseI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secreted effector protein YP_005236783.1 1098316 D 588858 CDS YP_005236784.1 378449425 complement(1099932..1100558) 1 NC_016856.1 hypothetical protein 1100558 588858001297 STM14_1195 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236784.1 1099932 R 588858 CDS YP_005236785.1 378449426 complement(1100627..1100926) 1 NC_016856.1 hypothetical protein 1100926 588858001298 STM14_1196 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236785.1 1100627 R 588858 CDS YP_005236786.1 378449427 complement(1100911..1101597) 1 NC_016856.1 hypothetical protein 1101597 588858001299 STM14_1197 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236786.1 1100911 R 588858 CDS YP_005236787.1 378449428 complement(1101868..1102059) 1 NC_016856.1 MsgA-like protein 1102059 588858001300 STM14_1198 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S MsgA-like protein YP_005236787.1 1101868 R 588858 CDS YP_005236788.2 410023165 1102486..1105098 1 NC_016856.1 similar to Escherichia coli aminopeptidase N (AAC74018.1); aminopeptidase N 1105098 pepN 588858001301 pepN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aminopeptidase N YP_005236788.2 1102486 D 588858 CDS YP_005236789.1 378449430 1105306..1106316 1 NC_016856.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1106316 pyrD 588858001302 pyrD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dihydroorotate dehydrogenase 2 YP_005236789.1 1105306 D 588858 CDS YP_005236790.1 378449431 complement(1106320..1106445) 1 NC_016856.1 hypothetical protein 1106445 588858001303 STM14_1201 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236790.1 1106320 R 588858 CDS YP_005236791.1 378449432 1106482..1107024 1 NC_016856.1 putative cytoplasmic protein 1107024 ycbW 588858001304 ycbW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236791.1 1106482 D 588858 CDS YP_005236792.1 378449433 complement(1107021..1108130) 1 NC_016856.1 putative iron-sulfur protein 1108130 588858001305 STM14_1203 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative iron-sulfur protein YP_005236792.1 1107021 R 588858 CDS YP_005236793.1 378449434 1108229..1110337 1 NC_016856.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1110337 ycbY 588858001306 ycbY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 23S rRNA m(2)G2445 methyltransferase YP_005236793.1 1108229 D 588858 CDS YP_005236794.1 378449435 1110350..1112257 1 NC_016856.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1112257 uup 588858001307 uup Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ABC transporter ATPase YP_005236794.1 1110350 D 588858 CDS YP_005236795.1 378449436 1112272..1113525 1 NC_016856.1 similar to Escherichia coli paraquat-inducible protein A (AAC74036.1); paraquat-inducible protein A 1113525 pqiA 588858001308 pqiA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S paraquat-inducible protein A YP_005236795.1 1112272 D 588858 CDS YP_005236796.1 378449437 1113530..1115170 1 NC_016856.1 similar to Escherichia coli paraquat-inducible protein B (AAC74037.1); paraquat-inducible protein B 1115170 pqiB 588858001309 pqiB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S paraquat-inducible protein B YP_005236796.1 1113530 D 588858 CDS YP_005236797.1 378449438 1115167..1115730 1 NC_016856.1 putative outer membrane protein 1115730 ymbA 588858001310 ymbA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005236797.1 1115167 D 588858 CDS YP_005236798.1 378449439 complement(1115818..1116021) 1 NC_016856.1 hypothetical protein 1116021 588858001311 STM14_1209 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236798.1 1115818 R 588858 CDS YP_005236799.1 378449440 1115985..1116152 1 NC_016856.1 similar to Escherichia coli ribosome modulation factor (AAC74039.1); involved in dimerization of 70S ribosomes; ribosome modulation factor 1116152 rmf 588858001312 rmf Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribosome modulation factor YP_005236799.1 1115985 D 588858 CDS YP_005236800.1 378449441 complement(1116252..1116770) 1 NC_016856.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 1116770 fabA 588858001313 fabA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-hydroxydecanoyl-ACP dehydratase YP_005236800.1 1116252 R 588858 CDS YP_005236801.1 378449442 complement(1116839..1118599) 1 NC_016856.1 similar to Escherichia coli putative ATP-dependent protease (AAC74041.1); putative protease 1118599 lonH 588858001314 lonH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative protease YP_005236801.1 1116839 R 588858 CDS YP_005236802.1 378449443 1118785..1119237 1 NC_016856.1 similar to Escherichia coli putative dehydrogenase (AAC74042.1); hypothetical protein 1119237 ycbG 588858001315 ycbG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236802.1 1118785 D 588858 CDS YP_005236803.1 378449444 complement(1119309..1120361) 1 NC_016856.1 OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d; outer membrane protein A 1120361 ompA 588858001316 ompA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane protein A YP_005236803.1 1119309 R 588858 CDS YP_005236804.1 378449445 complement(1120718..1121227) 1 NC_016856.1 suppressor of lon (SW:SULA_SALTY); inhibitor of cell division and FtsZ ring formation upon DNA damage/inhibition; HslVU and Lon involved in its turnover; SOS cell division inhibitor 1121227 sulA 588858001317 sulA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S SOS cell division inhibitor YP_005236804.1 1120718 R 588858 CDS YP_005236805.1 378449446 complement(1121248..1121352) 1 NC_016856.1 hypothetical protein 1121352 588858001318 STM14_1216 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236805.1 1121248 R 588858 CDS YP_005236806.1 378449447 1121444..1122049 1 NC_016856.1 putative DNA transformation protein 1122049 yccR 588858001319 yccR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA transformation protein YP_005236806.1 1121444 D 588858 CDS YP_005236807.1 378449448 complement(1122036..1124189) 1 NC_016856.1 efflux PET family; putative transporter 1124189 yccS 588858001320 yccS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transporter YP_005236807.1 1122036 R 588858 CDS YP_005236808.1 378449449 complement(1124208..1124654) 1 NC_016856.1 hypothetical protein 1124654 yccF 588858001321 yccF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236808.1 1124208 R 588858 CDS YP_005236809.1 378449450 1124778..1126832 1 NC_016856.1 catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 1126832 helD 588858001322 helD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA helicase IV YP_005236809.1 1124778 D 588858 CDS YP_005236810.1 378449451 complement(1126868..1127326) 1 NC_016856.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1127326 mgsA 588858001323 mgsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S methylglyoxal synthase YP_005236810.1 1126868 R 588858 CDS YP_005236811.1 378449452 complement(1127421..1128083) 1 NC_016856.1 hypothetical protein 1128083 yccT 588858001324 yccT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236811.1 1127421 R 588858 CDS YP_005236812.1 378449453 1128254..1128670 1 NC_016856.1 putative cytoplasmic protein 1128670 588858001325 STM14_1223 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236812.1 1128254 D 588858 CDS YP_005236813.1 378449454 complement(1128715..1129032) 1 NC_016856.1 putative inner membrane protein 1129032 yccV 588858001326 yccV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236813.1 1128715 R 588858 CDS YP_005236814.2 410023166 complement(1129090..1130301) 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC74053.1); putative SAM-dependent methyltransferase 1130301 yccW 588858001327 yccW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative SAM-dependent methyltransferase YP_005236814.2 1129090 R 588858 CDS YP_005236815.1 378449456 1130516..1131064 1 NC_016856.1 putative outer membrane protein 1131064 588858001328 STM14_1226 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005236815.1 1130516 D 588858 CDS YP_005236816.1 378449457 1131090..1131869 1 NC_016856.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC73647.1); AraC family; regulatory protein 1131869 588858001329 STM14_1227 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S regulatory protein YP_005236816.1 1131090 D 588858 CDS YP_005236817.1 378449458 1131918..1132199 1 NC_016856.1 putative phosphohydrolase 1132199 yccX 588858001330 yccX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phosphohydrolase YP_005236817.1 1131918 D 588858 CDS YP_005236818.1 378449459 complement(1132196..1132525) 1 NC_016856.1 Part of a sulfur-relay system, TusBCD, required for 2-thiolation of 5-methylaminomethyl-2-thiouridine at tRNA wobble positions; sulfurtransferase TusE 1132525 yccK 588858001331 yccK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sulfurtransferase TusE YP_005236818.1 1132196 R 588858 CDS YP_005236819.1 378449460 complement(1132612..1133271) 1 NC_016856.1 similar to Escherichia coli putative carrier/transport protein (AAC74056.1); TegT family; hypothetical protein 1133271 yccA 588858001332 yccA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236819.1 1132612 R 588858 CDS YP_005236820.2 410023167 complement(1133892..1134395) 1 NC_016856.1 similar to Gifsy prophage protein GtgA; GogA (STM1026); pathogenicity island-encoded protein A 1134395 pipA 588858001334 pipA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pathogenicity island-encoded protein A YP_005236820.2 1133892 R 588858 CDS YP_005236821.1 378449462 complement(1134794..1135669) 1 NC_016856.1 pathogenicity island-encoded protein B; similar to STM2780; secreted by SPI-2; type III secretion; localizes to Salmonella-containing vacuole and host cell membranes; secreted effector protein 1135669 pipB 588858001335 pipB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secreted effector protein YP_005236821.1 1134794 R 588858 CDS YP_005236822.1 378449463 1135671..1135796 1 NC_016856.1 hypothetical protein 1135796 588858001336 STM14_1234 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236822.1 1135671 D 588858 CDS YP_005236823.1 378449464 1135887..1136207 1 NC_016856.1 putative inner membrane protein 1136207 588858001337 STM14_1235 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236823.1 1135887 D 588858 CDS YP_005236824.1 378449465 complement(1136217..1136558) 1 NC_016856.1 similar to ipgE of Shigella; invasion gene E protein (gi|2582386); similar to type III secretion chaperones SigE and CesT; pathogenicity island-encoded protein C 1136558 pipC 588858001338 pipC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pathogenicity island-encoded protein C YP_005236824.1 1136217 R 588858 CDS YP_005236825.1 378449466 complement(1136575..1138260) 1 NC_016856.1 SigD; Salmonella outer protein B; similar to ipgD of Shigella; invasion gene D protein (gi|2582385); secreted by SPI-1; type III secretion; secreted effector protein 1138260 sopB 588858001339 sopB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secreted effector protein YP_005236825.1 1136575 R 588858 CDS YP_005236826.1 378449467 1138592..1138762 1 NC_016856.1 putative cytoplasmic protein 1138762 orfX 588858001340 orfX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236826.1 1138592 D 588858 CDS YP_005236827.1 378449468 complement(1138763..1138873) 1 NC_016856.1 putative cytoplasmic protein 1138873 588858001341 STM14_1239 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236827.1 1138763 R 588858 CDS YP_005236828.1 378449469 complement(1138982..1140544) 1 NC_016856.1 similar to dipeptidase A; pathogenicity island-encoded protein D 1140544 pipD 588858001342 pipD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pathogenicity island-encoded protein D YP_005236828.1 1138982 R 588858 CDS YP_005236829.1 378449470 complement(1140624..1141988) 1 NC_016856.1 histidine kinase; similar to Escherichia coli putative 2-component sensor protein (AAC75034.1); copper resistance protein 1141988 copS 588858001343 copS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S copper resistance protein YP_005236829.1 1140624 R 588858 CDS YP_005236830.1 378449471 complement(1141981..1142661) 1 NC_016856.1 induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistance to copper and several drugs when induced; transcriptional regulatory protein YedW 1142661 copR 588858001344 copR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulatory protein YedW YP_005236830.1 1141981 R 588858 CDS YP_005236831.1 378449472 1142797..1143207 1 NC_016856.1 putative periplasmic protein; hypothetical protein 1143207 588858001345 STM14_1243 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236831.1 1142797 D 588858 CDS YP_005236832.1 378449473 complement(1143230..1143337) 1 NC_016856.1 hypothetical protein 1143337 588858001346 STM14_1244 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236832.1 1143230 R 588858 CDS YP_005236833.1 378449474 1143361..1143543 1 NC_016856.1 hypothetical protein 1143543 588858001347 STM14_1245 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236833.1 1143361 D 588858 CDS YP_005236834.1 378449475 complement(1143540..1144052) 1 NC_016856.1 4-hydroxyphenylacetate catabolism 1144052 hpaC 588858001348 hpaC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-hydroxyphenylacetate catabolism YP_005236834.1 1143540 R 588858 CDS YP_005236835.1 378449476 complement(1144070..1145632) 1 NC_016856.1 4-hydroxyphenylacetate catabolism 1145632 hpaB 588858001349 hpaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-hydroxyphenylacetate catabolism YP_005236835.1 1144070 R 588858 CDS YP_005236836.1 378449477 complement(1145850..1146290) 1 NC_016856.1 4-hydroxyphenylacetate catabolism 1146290 hpaR 588858001350 hpaR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-hydroxyphenylacetate catabolism YP_005236836.1 1145850 R 588858 CDS YP_005236837.1 378449478 complement(1146275..1146388) 1 NC_016856.1 hypothetical protein 1146388 588858001351 STM14_1249 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236837.1 1146275 R 588858 CDS YP_005236838.1 378449479 1146565..1147854 1 NC_016856.1 similar to Escherichia coli putative isomerase (AAC74264.1); 4-hydroxyphenylacetate catabolism 1147854 hpaG 588858001352 hpaG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-hydroxyphenylacetate catabolism YP_005236838.1 1146565 D 588858 CDS YP_005236839.1 378449480 1147851..1149317 1 NC_016856.1 similar to Escherichia coli aldehyde dehydrogenase; prefers NADP over NAD (AAC74382.1); 4-hydroxyphenylacetate catabolism 1149317 hpaE 588858001353 hpaE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-hydroxyphenylacetate catabolism YP_005236839.1 1147851 D 588858 CDS YP_005236840.1 378449481 1149319..1150170 1 NC_016856.1 4-hydroxyphenylacetate catabolism 1150170 hpaD 588858001354 hpaD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-hydroxyphenylacetate catabolism YP_005236840.1 1149319 D 588858 CDS YP_005236841.1 378449482 1150180..1150560 1 NC_016856.1 4-hydroxyphenylacetate catabolism 1150560 hpaF 588858001355 hpaF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-hydroxyphenylacetate catabolism YP_005236841.1 1150180 D 588858 CDS YP_005236842.1 378449483 complement(1150549..1150701) 1 NC_016856.1 hypothetical protein 1150701 588858001356 STM14_1254 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236842.1 1150549 R 588858 CDS YP_005236843.1 378449484 1150703..1151506 1 NC_016856.1 similar to Escherichia coli 2-keto-4-pentenoate hydratase (AAC73453.1); 4-hydroxyphenylacetate catabolism 1151506 hpaH 588858001357 hpaH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-hydroxyphenylacetate catabolism YP_005236843.1 1150703 D 588858 CDS YP_005236844.1 378449485 1151517..1152308 1 NC_016856.1 4-hydroxyphenylacetate catabolism 1152308 hpaI 588858001358 hpaI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-hydroxyphenylacetate catabolism YP_005236844.1 1151517 D 588858 CDS YP_005236845.1 378449486 1152380..1153756 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC75306.1); 4-hydroxyphenylacetate catabolism 1153756 hpaX 588858001359 hpaX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-hydroxyphenylacetate catabolism YP_005236845.1 1152380 D 588858 CDS YP_005236846.1 378449487 1153766..1154662 1 NC_016856.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC74766.1); 4-hydroxyphenylacetate catabolism 1154662 hpaA 588858001360 hpaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-hydroxyphenylacetate catabolism YP_005236846.1 1153766 D 588858 CDS YP_005236847.1 378449488 1154676..1155614 1 NC_016856.1 hypothetical protein 1155614 588858001361 STM14_1259 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236847.1 1154676 D 588858 CDS YP_005236848.1 378449489 complement(1155618..1155782) 1 NC_016856.1 hypothetical protein 1155782 588858001362 STM14_1260 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236848.1 1155618 R 588858 CDS YP_005236849.1 378449490 complement(1156022..1156384) 1 NC_016856.1 RssC (gi|12004175); hypothetical protein 1156384 588858001363 STM14_1261 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236849.1 1156022 R 588858 CDS YP_005236850.1 378449491 1156832..1156987 1 NC_016856.1 hypothetical protein 1156987 588858001364 STM14_1262 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236850.1 1156832 D 588858 CDS YP_005236851.1 378449492 complement(1157038..1157343) 1 NC_016856.1 with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; chaperone-modulator protein CbpM 1157343 yccD 588858001365 yccD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chaperone-modulator protein CbpM YP_005236851.1 1157038 R 588858 CDS YP_005236852.1 378449493 complement(1157343..1158263) 1 NC_016856.1 functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock; curved DNA-binding protein CbpA 1158263 cbpA 588858001366 cbpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S curved DNA-binding protein CbpA YP_005236852.1 1157343 R 588858 CDS YP_005236853.1 378449494 complement(1158383..1158577) 1 NC_016856.1 hypothetical protein 1158577 588858001367 STM14_1265 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236853.1 1158383 R 588858 CDS YP_005236854.1 378449495 1158498..1158860 1 NC_016856.1 suppressor for copper-sensitivity A (gi|2327003); putative copper binding protein; suppression of copper sensitivity protein A 1158860 scsA 588858001368 scsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S suppression of copper sensitivity protein A YP_005236854.1 1158498 D 588858 CDS YP_005236855.1 378449496 1158909..1160795 1 NC_016856.1 suppressor for copper-sensitivity B (gi|2327004); suppression of copper sensitivity; suppression of copper sensitivity protein 1160795 scsB 588858001369 scsB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S suppression of copper sensitivity protein YP_005236855.1 1158909 D 588858 CDS YP_005236856.1 378449497 1160792..1161415 1 NC_016856.1 suppressor for copper-sensitivity C (gi|2327005); suppression of copper sensitivity; suppression of copper sensitivity protein 1161415 scsC 588858001370 scsC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S suppression of copper sensitivity protein YP_005236856.1 1160792 D 588858 CDS YP_005236857.1 378449498 1161405..1161911 1 NC_016856.1 suppressor for copper-sensitivity D (gi|2327006); suppression of copper sensitivity; suppression of copper sensitivity protein 1161911 scsD 588858001371 scsD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S suppression of copper sensitivity protein YP_005236857.1 1161405 D 588858 CDS YP_005236858.1 378449499 1162044..1163285 1 NC_016856.1 glucose-1-phosphatase precursor (SW:AGP_SALTY); glucose-1-phosphatase/inositol phosphatase 1163285 agp 588858001372 agp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucose-1-phosphatase/inositol phosphatase YP_005236858.1 1162044 D 588858 CDS YP_005236859.1 378449500 complement(1163319..1163546) 1 NC_016856.1 hypothetical protein 1163546 yccJ 588858001373 yccJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236859.1 1163319 R 588858 CDS YP_005236860.1 378449501 complement(1163567..1164163) 1 NC_016856.1 stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA 1164163 wraB 588858001374 wraB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S TrpR binding protein WrbA YP_005236860.1 1163567 R 588858 CDS YP_005236861.1 378449502 1164294..1164521 1 NC_016856.1 hypothetical protein 1164521 588858001375 STM14_1273 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236861.1 1164294 D 588858 CDS YP_005236862.1 378449503 1164548..1164715 1 NC_016856.1 putative cytoplasmic protein 1164715 ymdF 588858001377 ymdF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236862.1 1164548 D 588858 CDS YP_005236863.1 378449504 1164852..1165490 1 NC_016856.1 similar to Escherichia coli putative tet operon regulator (AAC74098.1); TetR/AcrR family; putative transcriptional repressor 1165490 ycdC 588858001378 ycdC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional repressor YP_005236863.1 1164852 D 588858 CDS YP_005236864.1 378449505 complement(1165487..1165882) 1 NC_016856.1 hypothetical protein 1165882 588858001379 STM14_1277 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236864.1 1165487 R 588858 CDS YP_006894088.1 410023224 complement(1165941..1169903) 1 NC_016856.1 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 1169903 putA 588858001380 putA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_006894088.1 1165941 R 588858 CDS YP_005236865.1 378449506 complement(1170030..1170278) 1 NC_016856.1 hypothetical protein 1170278 588858001381 STM14_1279 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236865.1 1170030 R 588858 CDS YP_005236866.1 378449507 complement(1170167..1170286) 1 NC_016856.1 hypothetical protein 1170286 588858001382 STM14_1280 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236866.1 1170167 R 588858 CDS YP_005236867.1 378449508 1170325..1171833 1 NC_016856.1 sodium/proline symporter proline permease (SW:PUTP_SALTY); SSS family; major sodium/proline symporter 1171833 putP 588858001383 putP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S major sodium/proline symporter YP_005236867.1 1170325 D 588858 CDS YP_005236868.1 378449509 1172347..1172457 1 NC_016856.1 hypothetical protein 1172457 588858001384 STM14_1282 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236868.1 1172347 D 588858 CDS YP_005236869.1 378449510 1172451..1172747 1 NC_016856.1 hypothetical protein 1172747 588858001385 STM14_1283 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236869.1 1172451 D 588858 CDS YP_005236870.1 378449511 complement(1173620..1174501) 1 NC_016856.1 putative transcriptional regulator 1174501 588858001387 STM14_1285 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005236870.1 1173620 R 588858 CDS YP_005236871.1 378449512 1174679..1174783 1 NC_016856.1 hypothetical protein 1174783 588858001388 STM14_1286 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236871.1 1174679 D 588858 CDS YP_005236872.1 378449513 complement(1174786..1176282) 1 NC_016856.1 similar to Escherichia coli putative cotransporter (AAC76702.1); putative sodium/glucose cotransporter 1176282 588858001389 STM14_1287 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sodium/glucose cotransporter YP_005236872.1 1174786 R 588858 CDS YP_005236873.1 378449514 1176314..1176421 1 NC_016856.1 hypothetical protein 1176421 588858001390 STM14_1288 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236873.1 1176314 D 588858 CDS YP_005236874.1 378449515 complement(1176396..1176605) 1 NC_016856.1 hypothetical protein 1176605 588858001391 STM14_1289 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236874.1 1176396 R 588858 CDS YP_005236875.1 378449516 complement(1176619..1177299) 1 NC_016856.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 1177299 588858001392 STM14_1290 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N-acetylmannosamine-6-phosphate 2-epimerase YP_005236875.1 1176619 R 588858 CDS YP_005236876.1 378449517 complement(1177413..1177520) 1 NC_016856.1 hypothetical protein 1177520 588858001393 STM14_1291 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236876.1 1177413 R 588858 CDS YP_005236877.1 378449518 1177573..1177704 1 NC_016856.1 hypothetical protein 1177704 588858001394 STM14_1292 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236877.1 1177573 D 588858 CDS YP_005236878.1 378449519 1177805..1178965 1 NC_016856.1 putative inner membrane protein 1178965 588858001395 STM14_1293 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236878.1 1177805 D 588858 CDS YP_005236879.1 378449520 1179011..1179703 1 NC_016856.1 putative outer membrane protein 1179703 588858001396 STM14_1294 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005236879.1 1179011 D 588858 CDS YP_005236880.1 378449521 1179986..1181266 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC77235.1); putative sialic acid transporter 1181266 588858001397 STM14_1295 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sialic acid transporter YP_005236880.1 1179986 D 588858 CDS YP_005236881.2 410023168 1181280..1182383 1 NC_016856.1 similar to Escherichia coli putative dehydrogenase (AAC77236.1); putative dehydrogenase 1182383 588858001398 STM14_1296 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dehydrogenase YP_005236881.2 1181280 D 588858 CDS YP_005236882.1 378449523 complement(1183064..1183228) 1 NC_016856.1 hypothetical protein 1183228 588858001400 STM14_1298 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236882.1 1183064 R 588858 CDS YP_005236883.1 378449524 1183227..1184165 1 NC_016856.1 similar to Escherichia coli putative dehydrogenase (AAC74117.1); putative oxidoreductase 1184165 ycdW 588858001401 ycdW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative oxidoreductase YP_005236883.1 1183227 D 588858 CDS YP_005236884.1 378449525 1184250..1184987 1 NC_016856.1 similar to hydrolases of the PHP family; putative hydrolase 1184987 ycdX 588858001402 ycdX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrolase YP_005236884.1 1184250 D 588858 CDS YP_005236885.1 378449526 1185011..1185565 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase component (AAC74119.1); putative oxidoreductase 1185565 ycdY 588858001403 ycdY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative oxidoreductase YP_005236885.1 1185011 D 588858 CDS YP_005236886.1 378449527 1185618..1186148 1 NC_016856.1 hypothetical protein in phoH-csgG intergenic region (SW:YCDZ_SALTY); putative inner membrane protein 1186148 ycdZ 588858001404 ycdZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236886.1 1185618 D 588858 CDS YP_005236887.1 378449528 complement(1186187..1187020) 1 NC_016856.1 curli production assembly/transport component CsgG precursor (SW:CSGG_SALTY); putative curli operon transcriptional regulator 1187020 csgG 588858001405 csgG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative curli operon transcriptional regulator YP_005236887.1 1186187 R 588858 CDS YP_005236888.1 378449529 complement(1187047..1187463) 1 NC_016856.1 nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgF 1187463 csgF 588858001406 csgF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S curli assembly protein CsgF YP_005236888.1 1187047 R 588858 CDS YP_005236889.1 378449530 complement(1187490..1187885) 1 NC_016856.1 chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE 1187885 csgE 588858001407 csgE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S curli assembly protein CsgE YP_005236889.1 1187490 R 588858 CDS YP_005236890.1 378449531 complement(1187890..1188540) 1 NC_016856.1 activates the csgBA and csgDEFG operons involved in biofilm formation; DNA-binding transcriptional regulator CsgD 1188540 csgD 588858001408 csgD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator CsgD YP_005236890.1 1187890 R 588858 CDS YP_005236891.1 378449532 complement(1188559..1188696) 1 NC_016856.1 hypothetical protein 1188696 588858001409 STM14_1307 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236891.1 1188559 R 588858 CDS YP_005236892.1 378449533 complement(1188894..1189040) 1 NC_016856.1 hypothetical protein 1189040 588858001410 STM14_1308 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236892.1 1188894 R 588858 CDS YP_005236893.1 378449534 1189295..1189750 1 NC_016856.1 CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; curlin minor subunit 1189750 csgB 588858001411 csgB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S curlin minor subunit YP_005236893.1 1189295 D 588858 CDS YP_005236894.1 378449535 1189792..1190247 1 NC_016856.1 major curlin subunit precursor; fimbrin SEF17 (SW:CSGA_SALTY); coiled surface structures; cryptic; cryptic curlin major subunit 1190247 csgA 588858001412 csgA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cryptic curlin major subunit YP_005236894.1 1189792 D 588858 CDS YP_005236895.1 378449536 1190309..1190635 1 NC_016856.1 involved in autoagglutination of curliated cells; not involved in production of curli fibers; putative autoagglutination protein 1190635 csgC 588858001413 csgC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative autoagglutination protein YP_005236895.1 1190309 D 588858 CDS YP_005236896.1 378449537 1190766..1191086 1 NC_016856.1 hypothetical protein in csgC-mdoG intergenic region precursor (SW:YMDA_SALTY); hypothetical protein 1191086 ymdA 588858001414 ymdA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236896.1 1190766 D 588858 CDS YP_005236897.1 378449538 1191175..1191714 1 NC_016856.1 similar to Escherichia coli putative polyprotein (AAC74129.1); putative ACR related to the C-terminal domain of histone macroH2A1; hypothetical protein 1191714 588858001415 STM14_1313 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236897.1 1191175 D 588858 CDS YP_005236898.1 378449539 1191650..1193137 1 NC_016856.1 similar to Escherichia coli putative synthase (AAC74130.1); putative phospholipase 1193137 ymdC 588858001416 ymdC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phospholipase YP_005236898.1 1191650 D 588858 CDS YP_005236899.1 378449540 complement(1193154..1194308) 1 NC_016856.1 required for the transfer of succinyl residues to the glucan backbone; glucans biosynthesis protein 1194308 mdoC 588858001417 mdoC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucans biosynthesis protein YP_005236899.1 1193154 R 588858 CDS YP_005236900.1 378449541 complement(1194339..1194509) 1 NC_016856.1 hypothetical protein 1194509 588858001418 STM14_1316 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236900.1 1194339 R 588858 CDS YP_005236901.1 378449542 1194580..1196115 1 NC_016856.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 1196115 mdoG 588858001419 mdoG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucan biosynthesis protein G YP_005236901.1 1194580 D 588858 CDS YP_005236902.1 378449543 1196108..1198651 1 NC_016856.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 1198651 mdoH 588858001420 mdoH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucosyltransferase MdoH YP_005236902.1 1196108 D 588858 CDS YP_005236903.1 378449544 1198725..1198952 1 NC_016856.1 hypothetical protein 1198952 yceK 588858001421 yceK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236903.1 1198725 D 588858 CDS YP_005236904.1 378449545 complement(1198953..1199327) 1 NC_016856.1 similar to Escherichia coli acidic protein; suppresses mutants lacking function of protein export (AAC74135.1); hypothetical protein 1199327 msyB 588858001422 msyB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236904.1 1198953 R 588858 CDS YP_005236905.1 378449546 complement(1199409..1200623) 1 NC_016856.1 Confers resistance to fosfomycin and deoxycholate; drug efflux system protein MdtG 1200623 yceE 588858001423 yceE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S drug efflux system protein MdtG YP_005236905.1 1199409 R 588858 CDS YP_005236906.1 378449547 1200601..1201062 1 NC_016856.1 hypothetical protein 1201062 588858001424 STM14_1322 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236906.1 1200601 D 588858 CDS YP_005236907.1 378449548 complement(1200778..1201698) 1 NC_016856.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 1201698 htrB 588858001425 htrB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipid A biosynthesis lauroyl acyltransferase YP_005236907.1 1200778 R 588858 CDS YP_005236908.1 378449549 1201918..1202970 1 NC_016856.1 hypothetical protein 1202970 yceA 588858001426 yceA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236908.1 1201918 D 588858 CDS YP_005236909.1 378449550 complement(1203022..1203597) 1 NC_016856.1 hypothetical protein 1203597 yceI 588858001427 yceI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236909.1 1203022 R 588858 CDS YP_005236910.1 378449551 complement(1203594..1204166) 1 NC_016856.1 similar to Escherichia coli putative cytochrome (AAC74141.1); putative inner membrane protein 1204166 588858001428 STM14_1326 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236910.1 1203594 R 588858 CDS YP_005236911.1 378449552 1204177..1204380 1 NC_016856.1 hypothetical protein 1204380 588858001429 STM14_1327 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236911.1 1204177 D 588858 CDS YP_005236912.1 378449553 complement(1204429..1204542) 1 NC_016856.1 putative inner membrane protein 1204542 yceO 588858001430 yceO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005236912.1 1204429 R 588858 CDS YP_005236913.1 378449554 complement(1204583..1205701) 1 NC_016856.1 catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase 1205701 solA 588858001431 solA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N-methyltryptophan oxidase YP_005236913.1 1204583 R 588858 CDS YP_005236914.1 378449555 complement(1205814..1206068) 1 NC_016856.1 BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; biofilm formation regulatory protein BssS 1206068 bssS 588858001432 bssS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S biofilm formation regulatory protein BssS YP_005236914.1 1205814 R 588858 CDS YP_005236915.1 378449556 complement(1206358..1206603) 1 NC_016856.1 similar to Escherichia coli damage-inducible protein I (AAC74145.1); inhibits UmuD processing; DNA damage-inducible protein I 1206603 dinI 588858001433 dinI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA damage-inducible protein I YP_005236915.1 1206358 R 588858 CDS YP_005236916.1 378449557 complement(1206677..1207723) 1 NC_016856.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1207723 pyrC 588858001434 pyrC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dihydroorotase YP_005236916.1 1206677 R 588858 CDS YP_005236917.1 378449558 complement(1207828..1208388) 1 NC_016856.1 hypothetical protein in pyrC 3'region (SW:YCEB_SALTY); hypothetical protein 1208388 yceB 588858001435 yceB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236917.1 1207828 R 588858 CDS YP_005236918.1 378449559 complement(1208513..1209160) 1 NC_016856.1 cofactor involved in the reduction of disulfides; glutaredoxin 1209160 grxB 588858001436 grxB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutaredoxin YP_005236918.1 1208513 R 588858 CDS YP_005236919.1 378449560 complement(1209224..1210432) 1 NC_016856.1 Confers resistance to norfloxacin and enoxacin; multidrug resistance protein MdtH 1210432 yceL 588858001437 yceL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multidrug resistance protein MdtH YP_005236919.1 1209224 R 588858 CDS YP_005236920.1 378449561 1210669..1211253 1 NC_016856.1 similar to Escherichia coli acetylase; acetylates N-terminal alanine of 30S ribosomal subunit protein S5 (AAC74150.1); ribosomal-protein-S5-alanine N-acetyltransferase 1211253 rimJ 588858001438 rimJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribosomal-protein-S5-alanine N-acetyltransferase YP_005236920.1 1210669 D 588858 CDS YP_005236921.1 378449562 1211289..1211936 1 NC_016856.1 hypothetical protein 1211936 yceH 588858001439 yceH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236921.1 1211289 D 588858 CDS YP_005236922.1 378449563 1211938..1212861 1 NC_016856.1 virulence factor MviM (SW:MVIM_SALTY); putative virulence protein 1212861 mviM 588858001440 mviM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative virulence protein YP_005236922.1 1211938 D 588858 CDS YP_005236923.1 378449564 complement(1212983..1213159) 1 NC_016856.1 hypothetical protein 1213159 588858001441 STM14_1339 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236923.1 1212983 R 588858 CDS YP_005236924.1 378449565 1213126..1214700 1 NC_016856.1 virulence factor MviN (SW:MVIN_SALTY); putative virulence protein 1214700 mviN 588858001442 mviN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative virulence protein YP_005236924.1 1213126 D 588858 CDS YP_005236925.1 378449566 complement(1214782..1215204) 1 NC_016856.1 flagella synthesis protein FlgN (SW:FLGN_SALTY); putative FlgK/FlgL export chaperone 1215204 flgN 588858001443 flgN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative FlgK/FlgL export chaperone YP_005236925.1 1214782 R 588858 CDS YP_005236926.1 378449567 complement(1215209..1215502) 1 NC_016856.1 regulates the flagellar specific sigma28 transcription factor; anti-sigma-28 factor FlgM 1215502 flgM 588858001444 flgM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S anti-sigma-28 factor FlgM YP_005236926.1 1215209 R 588858 CDS YP_005236927.1 378449568 complement(1215594..1216253) 1 NC_016856.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 1216253 flgA 588858001445 flgA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar basal body P-ring biosynthesis protein FlgA YP_005236927.1 1215594 R 588858 CDS YP_005236928.1 378449569 complement(1216241..1216396) 1 NC_016856.1 flagellar basal body P-ring biosynthesis protein FlgA 1216396 588858001446 STM14_1344 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar basal body P-ring biosynthesis protein FlgA YP_005236928.1 1216241 R 588858 CDS YP_005236929.1 378449570 1216410..1216826 1 NC_016856.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 1216826 flgB 588858001447 flgB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar basal body rod protein FlgB YP_005236929.1 1216410 D 588858 CDS YP_005236930.1 378449571 1216830..1217234 1 NC_016856.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1217234 flgC 588858001448 flgC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar basal body rod protein FlgC YP_005236930.1 1216830 D 588858 CDS YP_005236931.1 378449572 1217246..1217944 1 NC_016856.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1217944 flgD 588858001449 flgD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar basal body rod modification protein YP_005236931.1 1217246 D 588858 CDS YP_005236932.1 378449573 1217971..1219182 1 NC_016856.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1219182 flgE 588858001450 flgE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar hook protein FlgE YP_005236932.1 1217971 D 588858 CDS YP_005236933.1 378449574 1219203..1219958 1 NC_016856.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1219958 flgF 588858001451 flgF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar basal body rod protein FlgF YP_005236933.1 1219203 D 588858 CDS YP_005236934.1 378449575 1219972..1220754 1 NC_016856.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1220754 flgG 588858001452 flgG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar basal body rod protein FlgG YP_005236934.1 1219972 D 588858 CDS YP_005236935.1 378449576 1220809..1221507 1 NC_016856.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 1221507 flgH 588858001453 flgH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar basal body L-ring protein YP_005236935.1 1220809 D 588858 CDS YP_005236936.1 378449577 1221519..1222616 1 NC_016856.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1222616 flgI 588858001454 flgI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar basal body P-ring protein YP_005236936.1 1221519 D 588858 CDS YP_005236937.1 378449578 1222616..1223566 1 NC_016856.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; peptidoglycan hydrolase 1223566 flgJ 588858001455 flgJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptidoglycan hydrolase YP_005236937.1 1222616 D 588858 CDS YP_005236938.1 378449579 1223631..1225292 1 NC_016856.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1225292 flgK 588858001456 flgK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar hook-associated protein FlgK YP_005236938.1 1223631 D 588858 CDS YP_005236939.1 378449580 1225307..1226260 1 NC_016856.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes; flagellar hook-associated protein FlgL 1226260 flgL 588858001457 flgL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar hook-associated protein FlgL YP_005236939.1 1225307 D 588858 CDS YP_005236940.1 378449581 complement(1226280..1226474) 1 NC_016856.1 hypothetical protein 1226474 588858001458 STM14_1356 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236940.1 1226280 R 588858 CDS YP_005236941.1 378449582 complement(1226517..1229720) 1 NC_016856.1 bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase; ribonuclease E 1229720 rne 588858001459 rne Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonuclease E YP_005236941.1 1226517 R 588858 CDS YP_005236942.2 410023169 1230294..1231253 1 NC_016856.1 catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; 23S rRNA pseudouridylate synthase C 1231253 rluC 588858001461 rluC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 23S rRNA pseudouridylate synthase C YP_005236942.2 1230294 D 588858 CDS YP_005236943.1 378449584 1231409..1232152 1 NC_016856.1 putative inner membrane lipoprotein 1232152 588858001462 STM14_1360 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane lipoprotein YP_005236943.1 1231409 D 588858 CDS YP_005236944.1 378449585 1232358..1232582 1 NC_016856.1 hypothetical protein 1232582 588858001463 STM14_1361 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236944.1 1232358 D 588858 CDS YP_005236945.1 378449586 complement(1232654..1233238) 1 NC_016856.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1233238 maf_1 588858001464 maf_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Maf-like protein YP_005236945.1 1232654 R 588858 CDS YP_005236946.1 378449587 1233436..1233957 1 NC_016856.1 hypothetical protein in rne-rpmF intergenic region (G30K) (SW:YCED_SALTY); hypothetical protein 1233957 yceD 588858001465 yceD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236946.1 1233436 D 588858 CDS YP_005236947.1 378449588 1234009..1234182 1 NC_016856.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1234182 rpmF 588858001466 rpmF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L32 YP_005236947.1 1234009 D 588858 CDS YP_005236948.1 378449589 1234316..1235395 1 NC_016856.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1235395 plsX 588858001467 plsX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycerol-3-phosphate acyltransferase PlsX YP_005236948.1 1234316 D 588858 CDS YP_005236949.1 378449590 1235475..1236428 1 NC_016856.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1236428 fabH 588858001468 fabH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-oxoacyl-ACP synthase YP_005236949.1 1235475 D 588858 CDS YP_005236950.1 378449591 1236444..1237373 1 NC_016856.1 malonyl coA-acyl carrier protein transacylase (SW:FABD_SALTY); acyl carrier protein S-malonyltransferase 1237373 fabD 588858001469 fabD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acyl carrier protein S-malonyltransferase YP_005236950.1 1236444 D 588858 CDS YP_005236951.1 378449592 1237386..1238120 1 NC_016856.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1238120 fabG 588858001470 fabG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-ketoacyl-ACP reductase YP_005236951.1 1237386 D 588858 CDS YP_005236952.1 378449593 1238276..1238512 1 NC_016856.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1238512 acpP 588858001471 acpP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acyl carrier protein YP_005236952.1 1238276 D 588858 CDS YP_005236953.1 378449594 1238598..1239839 1 NC_016856.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1239839 fabF 588858001472 fabF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-oxoacyl-(acyl carrier protein) synthase II YP_005236953.1 1238598 D 588858 CDS YP_005236954.1 378449595 1239963..1240772 1 NC_016856.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1240772 pabC 588858001473 pabC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-amino-4-deoxychorismate lyase YP_005236954.1 1239963 D 588858 CDS YP_005236955.1 378449596 1240775..1241797 1 NC_016856.1 similar to Escherichia coli putative thymidylate kinase (AAC74181.1); hypothetical protein 1241797 yceG 588858001474 yceG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236955.1 1240775 D 588858 CDS YP_005236956.1 378449597 1241787..1242428 1 NC_016856.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1242428 tdk_1 588858001475 tdk_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thymidylate kinase YP_005236956.1 1241787 D 588858 CDS YP_005236957.1 378449598 1242425..1243429 1 NC_016856.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1243429 holB 588858001476 holB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA polymerase III subunit delta' YP_005236957.1 1242425 D 588858 CDS YP_005236958.1 378449599 1243440..1244237 1 NC_016856.1 putative metallodependent hydrolase 1244237 ycfH 588858001477 ycfH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative metallodependent hydrolase YP_005236958.1 1243440 D 588858 CDS YP_005236959.1 378449600 complement(1244261..1244398) 1 NC_016856.1 hypothetical protein 1244398 588858001478 STM14_1376 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236959.1 1244261 R 588858 CDS YP_005236960.1 378449601 1244532..1245965 1 NC_016856.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; glucose-specific PTS system IIBC components 1245965 ptsG 588858001479 ptsG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucose-specific PTS system IIBC components YP_005236960.1 1244532 D 588858 CDS YP_005236961.1 378449602 complement(1246050..1248224) 1 NC_016856.1 similar to Escherichia coli outer membrane receptor for ferric iron uptake (AAC74186.1); receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid uptake; ferric-rhodotorulic acid outer membrane transporter 1248224 fhuE 588858001480 fhuE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ferric-rhodotorulic acid outer membrane transporter YP_005236961.1 1246050 R 588858 CDS YP_005236962.1 378449603 1248566..1248925 1 NC_016856.1 purine nucleoside phosphoramidase 1248925 ycfF 588858001481 ycfF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S purine nucleoside phosphoramidase YP_005236962.1 1248566 D 588858 CDS YP_005236963.1 378449604 1248928..1249302 1 NC_016856.1 putative outer membrane lipoprotein 1249302 ycfL 588858001482 ycfL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005236963.1 1248928 D 588858 CDS YP_005236964.1 378449605 1249316..1249954 1 NC_016856.1 putative outer membrane lipoprotein 1249954 ycfM 588858001483 ycfM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005236964.1 1249316 D 588858 CDS YP_005236965.1 378449606 1249935..1250759 1 NC_016856.1 catalyzes the phosphorylation of thiamine to thiamine phosphate; thiamine kinase 1250759 thiK 588858001484 thiK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiamine kinase YP_005236965.1 1249935 D 588858 CDS YP_005236966.1 378449607 1250770..1251795 1 NC_016856.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1251795 nagZ 588858001485 nagZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S beta-hexosaminidase YP_005236966.1 1250770 D 588858 CDS YP_005236967.1 378449608 1251820..1252362 1 NC_016856.1 hypothetical protein 1252362 ycfP 588858001486 ycfP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236967.1 1251820 D 588858 CDS YP_005236968.1 378449609 1252617..1253921 1 NC_016856.1 similar to Escherichia coli respiratory NADH dehydrogenase (AAC74193.1); cupric reductase; respiratory NADH dehydrogenase 2 1253921 ndh 588858001487 ndh Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S respiratory NADH dehydrogenase 2 YP_005236968.1 1252617 D 588858 CDS YP_005236969.1 378449610 1254100..1254639 1 NC_016856.1 hypothetical protein 1254639 ycfJ 588858001488 ycfJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236969.1 1254100 D 588858 CDS YP_005236970.1 378449611 complement(1254714..1255349) 1 NC_016856.1 TetR/AcrR family; putative transcriptional repressor 1255349 ycfQ 588858001489 ycfQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional repressor YP_005236970.1 1254714 R 588858 CDS YP_005236971.1 378449612 1255591..1255848 1 NC_016856.1 putative outer membrane protein 1255848 ycfR 588858001490 ycfR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005236971.1 1255591 D 588858 CDS YP_005236972.1 378449613 complement(1255945..1256910) 1 NC_016856.1 hypothetical protein 1256910 ycfS 588858001491 ycfS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236972.1 1255945 R 588858 CDS YP_005236973.1 378449614 complement(1256910..1257065) 1 NC_016856.1 hypothetical protein 1257065 588858001492 STM14_1390 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236973.1 1256910 R 588858 CDS YP_005236974.1 378449615 complement(1257058..1260504) 1 NC_016856.1 similar to Escherichia coli transcription-repair coupling factor; mutation frequency decline (AAC74198.1); results in preferential repair of transcribed DNA; transcription-repair coupling factor 1260504 mfd 588858001493 mfd Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcription-repair coupling factor YP_005236974.1 1257058 R 588858 CDS YP_005236975.2 410023170 1260842..1262041 1 NC_016856.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 1262041 ycfU 588858001494 ycfU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane-specific lipoprotein transporter subunit LolC YP_005236975.2 1260842 D 588858 CDS YP_005236976.1 378449617 1262034..1262735 1 NC_016856.1 outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone; lipoprotein transporter ATP-binding subunit 1262735 lolD 588858001495 lolD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipoprotein transporter ATP-binding subunit YP_005236976.1 1262034 D 588858 CDS YP_005236977.1 378449618 1262735..1263979 1 NC_016856.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 1263979 ycfW 588858001496 ycfW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane-specific lipoprotein transporter subunit LolE YP_005236977.1 1262735 D 588858 CDS YP_005236978.1 378449619 1264008..1264919 1 NC_016856.1 catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 1264919 ycfX 588858001497 ycfX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N-acetyl-D-glucosamine kinase YP_005236978.1 1264008 D 588858 CDS YP_005236979.1 378449620 1264938..1265759 1 NC_016856.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1265759 cobB 588858001498 cobB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NAD-dependent deacetylase YP_005236979.1 1264938 D 588858 CDS YP_005236980.1 378449621 complement(1265841..1266887) 1 NC_016856.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; spermidine/putrescine ABC transporter substrate-binding protein 1266887 potD 588858001499 potD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S spermidine/putrescine ABC transporter substrate-binding protein YP_005236980.1 1265841 R 588858 CDS YP_005236981.1 378449622 complement(1266912..1267691) 1 NC_016856.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter membrane protein 1267691 potC 588858001500 potC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S spermidine/putrescine ABC transporter membrane protein YP_005236981.1 1266912 R 588858 CDS YP_005236982.1 378449623 complement(1267794..1267916) 1 NC_016856.1 hypothetical protein 1267916 588858001501 STM14_1399 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236982.1 1267794 R 588858 CDS YP_005236983.1 378449624 complement(1268007..1269017) 1 NC_016856.1 translocated by the type III secretion system SPI-2; required for the formation of lysosomal glycoprotein structures (Sifs); required for maintenance of membrane in the Salmonella-containing vacuole; a cysteine residue with CAAX motif is modified by isoprenoid addition of protein geranylgeranyl transferase I; also modified by S-acylation; secreted effector protein 1269017 sifA 588858001502 sifA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secreted effector protein YP_005236983.1 1268007 R 588858 CDS YP_005236984.1 378449625 complement(1269076..1269240) 1 NC_016856.1 hypothetical protein 1269240 588858001503 STM14_1401 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236984.1 1269076 R 588858 CDS YP_005236985.1 378449626 complement(1269346..1270209) 1 NC_016856.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter membrane protein 1270209 potB 588858001504 potB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S spermidine/putrescine ABC transporter membrane protein YP_005236985.1 1269346 R 588858 CDS YP_005236986.1 378449627 complement(1270193..1271329) 1 NC_016856.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase 1271329 potA 588858001505 potA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putrescine/spermidine ABC transporter ATPase YP_005236986.1 1270193 R 588858 CDS YP_005236987.1 378449628 1271580..1272809 1 NC_016856.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1272809 pepT 588858001506 pepT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptidase T YP_005236987.1 1271580 D 588858 CDS YP_005236988.1 378449629 1273020..1273478 1 NC_016856.1 transposase for insertion sequence element IS200 (SW:T200_SALTY); transposase 1273478 tnpA_4 588858001508 tnpA_4 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transposase YP_005236988.1 1273020 D 588858 CDS YP_005236989.1 378449630 complement(1274898..1276019) 1 NC_016856.1 putative cytoplasmic protein 1276019 ycfD 588858001509 ycfD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005236989.1 1274898 R 588858 CDS YP_005236990.1 378449631 complement(1276100..1277563) 1 NC_016856.1 virulence sensor protein PhoQ (SW:PHOQ_SALTY); in two-component regulatory system with PhoP; ligand is Mg+; sensor protein PhoQ 1277563 phoQ 588858001510 phoQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sensor protein PhoQ YP_005236990.1 1276100 R 588858 CDS YP_005236991.1 378449632 complement(1277563..1278237) 1 NC_016856.1 response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; DNA-binding transcriptional regulator PhoP 1278237 phoP 588858001511 phoP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator PhoP YP_005236991.1 1277563 R 588858 CDS YP_005236992.1 378449633 complement(1278361..1279731) 1 NC_016856.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1279731 purB 588858001512 purB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S adenylosuccinate lyase YP_005236992.1 1278361 R 588858 CDS YP_005236993.1 378449634 complement(1279735..1280382) 1 NC_016856.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 1280382 ycfC 588858001513 ycfC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236993.1 1279735 R 588858 CDS YP_005236994.1 378449635 complement(1280463..1281569) 1 NC_016856.1 Enables the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase 1281569 trmU 588858001514 trmU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase YP_005236994.1 1280463 R 588858 CDS YP_005236995.1 378449636 complement(1281623..1282084) 1 NC_016856.1 similar to Escherichia coli putative phosphohydrolase (AAC74218.1); putative MutT-like protein 1282084 ymfB 588858001515 ymfB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative MutT-like protein YP_005236995.1 1281623 R 588858 CDS YP_005236996.1 378449637 complement(1282096..1282425) 1 NC_016856.1 hypothetical protein 1282425 588858001516 STM14_1414 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005236996.1 1282096 R 588858 CDS YP_005236997.1 378449638 complement(1282422..1283087) 1 NC_016856.1 putative ribosomal large subunit pseudouridine synthase 1283087 ymfC 588858001517 ymfC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ribosomal large subunit pseudouridine synthase YP_005236997.1 1282422 R 588858 CDS YP_005236998.1 378449639 1283259..1284509 1 NC_016856.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1284509 icdA 588858001518 icdA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S isocitrate dehydrogenase YP_005236998.1 1283259 D 588858 CDS YP_005236999.1 378449640 complement(1284622..1285764) 1 NC_016856.1 prophage lambda integrase 1285764 588858001519 STM14_1417 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S prophage lambda integrase YP_005236999.1 1284622 R 588858 CDS YP_005237000.1 378449641 complement(1285754..1285990) 1 NC_016856.1 excisionase 1285990 588858001520 STM14_1418 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S excisionase YP_005237000.1 1285754 R 588858 CDS YP_005237001.1 378449642 complement(1286040..1286591) 1 NC_016856.1 similar to Salmonella enterica subsp. enterica serovar Newport; Eaa protein 1286591 588858001521 STM14_1419 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Eaa protein YP_005237001.1 1286040 R 588858 CDS YP_005237002.1 378449643 complement(1286588..1286920) 1 NC_016856.1 similar to hypothetical protein SPAB_02272 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7]; hypothetical protein 1286920 588858001522 STM14_1420 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237002.1 1286588 R 588858 CDS YP_005237003.2 410023171 complement(1286913..1287233) 1 NC_016856.1 similar to hypothetical protein SPAB_02271 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7]; hypothetical protein 1287233 588858001523 STM14_1421 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237003.2 1286913 R 588858 CDS YP_005237004.1 378449645 complement(1287269..1288099) 1 NC_016856.1 recombination and repair protein RecT 1288099 588858001524 STM14_1422 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S recombination and repair protein RecT YP_005237004.1 1287269 R 588858 CDS YP_005237007.1 378449648 complement(1290945..1291115) 1 NC_016856.1 similar to hypothetical protein SPAB_02195 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7]; hypothetical protein 1291115 588858001526 STM14_1425 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237007.1 1290945 R 588858 CDS YP_005237008.1 378449649 complement(1291108..1291224) 1 NC_016856.1 similar to hypothetical protein STM2629 [Phage Gifsy-1]; prophage protein 1291224 588858001527 STM14_1426 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S prophage protein YP_005237008.1 1291108 R 588858 CDS YP_005237009.1 378449650 1291515..1291721 1 NC_016856.1 similar to hypothetical protein Sententeric_23977 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433]; hypothetical protein 1291721 588858001528 STM14_1427 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237009.1 1291515 D 588858 CDS YP_005237010.1 378449651 complement(1291829..1292914) 1 NC_016856.1 similar to ATPase domain protein [Geobacter lovleyi SZ]; hypothetical protein 1292914 588858001529 STM14_1428 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237010.1 1291829 R 588858 CDS YP_005237011.1 378449652 complement(1293066..1293533) 1 NC_016856.1 putative regulator 1293533 588858001530 STM14_1429 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulator YP_005237011.1 1293066 R 588858 CDS YP_005237012.2 410023172 1293547..1293774 1 NC_016856.1 similar to hypothetical protein Sententer_01000067_0100027560 [Salmonella enterica subsp. enterica serovar 4,5,12:i:- str. CVM23701]; hypothetical protein 1293774 588858001531 STM14_1430 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237012.2 1293547 D 588858 CDS YP_005237013.1 378449654 1293794..1294114 1 NC_016856.1 similar to Gifsy-1 prophage cI protein; prophage cI protein 1294114 588858001532 STM14_1431 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S prophage cI protein YP_005237013.1 1293794 D 588858 CDS YP_005237014.1 378449655 1294206..1295111 1 NC_016856.1 phage replication protein O 1295111 588858001533 STM14_1432 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage replication protein O YP_005237014.1 1294206 D 588858 CDS YP_005237015.1 378449656 1295108..1295800 1 NC_016856.1 phage replication protein P 1295800 588858001534 STM14_1433 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage replication protein P YP_005237015.1 1295108 D 588858 CDS YP_005237016.1 378449657 1295815..1296480 1 NC_016856.1 similar to hypothetical protein Salmentericaenterica_07884 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066]; Ead-like protein 1296480 588858001535 STM14_1434 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Ead-like protein YP_005237016.1 1295815 D 588858 CDS YP_005237017.1 378449658 1296482..1296952 1 NC_016856.1 DNA N-4 cytosine methyltransferase 1296952 588858001536 STM14_1435 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA N-4 cytosine methyltransferase YP_005237017.1 1296482 D 588858 CDS YP_005237018.1 378449659 1296955..1297608 1 NC_016856.1 similar to hypothetical protein STY1027 [Salmonella enterica subsp. enterica serovar Typhi str. CT18]; Eaa-like protein 1297608 588858001537 STM14_1436 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Eaa-like protein YP_005237018.1 1296955 D 588858 CDS YP_005237019.1 378449660 1297601..1297882 1 NC_016856.1 similar to hypothetical protein UTI89_C1271 [Escherichia coli UTI89]; hypothetical protein 1297882 588858001538 STM14_1437 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237019.1 1297601 D 588858 CDS YP_005237020.1 378449661 1297994..1298185 1 NC_016856.1 hypothetical protein 1298185 588858001539 STM14_1438 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237020.1 1297994 D 588858 CDS YP_005237021.1 378449662 1298444..1298677 1 NC_016856.1 prophage DinI 1298677 588858001540 STM14_1439 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S prophage DinI YP_005237021.1 1298444 D 588858 CDS YP_005237022.1 378449663 1298794..1299042 1 NC_016856.1 putative bacteriophage protein 1299042 588858001541 STM14_1440 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative bacteriophage protein YP_005237022.1 1298794 D 588858 CDS YP_005237023.1 378449664 1299077..1299676 1 NC_016856.1 IrsA 1299676 588858001542 STM14_1441 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S IrsA YP_005237023.1 1299077 D 588858 CDS YP_005237024.1 378449665 1299673..1299867 1 NC_016856.1 similar to hypothetical protein Salentericaenterica_14861 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537]; hypothetical protein 1299867 588858001543 STM14_1442 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237024.1 1299673 D 588858 CDS YP_005237025.1 378449666 1299849..1300145 1 NC_016856.1 similar to [Salmonella enterica subsp. enterica serovar Newport str. SL317]; hypothetical protein 1300145 588858001544 STM14_1443 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237025.1 1299849 D 588858 CDS YP_005237026.1 378449667 1300142..1300696 1 NC_016856.1 putative bacteriophage protein 1300696 588858001545 STM14_1444 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative bacteriophage protein YP_005237026.1 1300142 D 588858 CDS YP_005237027.1 378449668 1300693..1300881 1 NC_016856.1 hypothetical protein 1300881 588858001546 STM14_1445 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237027.1 1300693 D 588858 CDS YP_005237028.1 378449669 1300963..1301523 1 NC_016856.1 putative bacteriophage protein 1301523 588858001547 STM14_1446 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative bacteriophage protein YP_005237028.1 1300963 D 588858 CDS YP_005237029.1 378449670 1301766..1301954 1 NC_016856.1 similar to hypothetical protein SNSL317_A4459 [Salmonella enterica subsp. enterica serovar Newport str. SL317]; hypothetical protein 1301954 588858001548 STM14_1447 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237029.1 1301766 D 588858 CDS YP_005237030.1 378449671 1302108..1302326 1 NC_016856.1 similar to hypothetical protein Sententerica_21953 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191]; hypothetical protein 1302326 588858001549 STM14_1448 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237030.1 1302108 D 588858 CDS YP_005237031.1 378449672 complement(1302338..1302877) 1 NC_016856.1 similar to hypothetical protein Sententerica_21948 [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191]; hypothetical protein 1302877 588858001550 STM14_1449 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237031.1 1302338 R 588858 CDS YP_005237032.1 378449673 1303055..1303357 1 NC_016856.1 phage-holin analog protein 1303357 588858001551 STM14_1450 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage-holin analog protein YP_005237032.1 1303055 D 588858 CDS YP_005237033.1 378449674 1303335..1303874 1 NC_016856.1 lysozyme 1303874 588858001552 STM14_1451 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lysozyme YP_005237033.1 1303335 D 588858 CDS YP_005237034.1 378449675 1304044..1304181 1 NC_016856.1 putative bacteriophage protein 1304181 588858001553 STM14_1452 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative bacteriophage protein YP_005237034.1 1304044 D 588858 CDS YP_005237035.1 378449676 1304183..1304647 1 NC_016856.1 bacteriophage lysis protein 1304647 588858001554 STM14_1453 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bacteriophage lysis protein YP_005237035.1 1304183 D 588858 CDS YP_005237036.1 378449677 complement(1304874..1305275) 1 NC_016856.1 similar to hypothetical protein STM2610 [Phage Gifsy-1]; hypothetical protein 1305275 588858001555 STM14_1454 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237036.1 1304874 R 588858 CDS YP_005237037.1 378449678 1305561..1306106 1 NC_016856.1 prophage DNA packaging protein 1306106 588858001556 STM14_1455 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S prophage DNA packaging protein YP_005237037.1 1305561 D 588858 CDS YP_005237038.1 378449679 1306078..1308009 1 NC_016856.1 terminase-like large protein 1308009 588858001557 STM14_1456 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S terminase-like large protein YP_005237038.1 1306078 D 588858 CDS YP_005237039.1 378449680 1307993..1308196 1 NC_016856.1 head-to-tail joining-like protein 1308196 588858001558 STM14_1457 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S head-to-tail joining-like protein YP_005237039.1 1307993 D 588858 CDS YP_005237040.2 410023173 1308193..1309773 1 NC_016856.1 phage portal protein, lambda family 1309773 588858001559 STM14_1458 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage portal protein, lambda family YP_005237040.2 1308193 D 588858 CDS YP_005237041.1 378449682 1309763..1311259 1 NC_016856.1 prophage head-tail preconnector 1311259 588858001560 STM14_1459 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S prophage head-tail preconnector YP_005237041.1 1309763 D 588858 CDS YP_005237042.1 378449683 1311272..1311619 1 NC_016856.1 phage head-like protein 1311619 588858001561 STM14_1460 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage head-like protein YP_005237042.1 1311272 D 588858 CDS YP_005237043.1 378449684 1311674..1312702 1 NC_016856.1 phage head-like protein 1312702 588858001562 STM14_1461 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage head-like protein YP_005237043.1 1311674 D 588858 CDS YP_005237044.2 410023174 1313135..1313518 1 NC_016856.1 minor capsid protein FII 1313518 588858001564 STM14_1463 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S minor capsid protein FII YP_005237044.2 1313135 D 588858 CDS YP_005237045.1 378449686 1313546..1314124 1 NC_016856.1 prophage minor tail protein Z 1314124 588858001565 STM14_1464 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S prophage minor tail protein Z YP_005237045.1 1313546 D 588858 CDS YP_005237046.1 378449687 complement(1314173..1315423) 1 NC_016856.1 Peyer's patch-specific virulence factor GipA 1315423 588858001566 STM14_1465 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Peyer's patch-specific virulence factor GipA YP_005237046.1 1314173 R 588858 CDS YP_005237047.1 378449688 1315412..1315813 1 NC_016856.1 phage minor tail protein U 1315813 588858001567 STM14_1466 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage minor tail protein U YP_005237047.1 1315412 D 588858 CDS YP_005237048.1 378449689 1315824..1316567 1 NC_016856.1 major tail-like protein 1316567 588858001568 STM14_1467 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S major tail-like protein YP_005237048.1 1315824 D 588858 CDS YP_005237049.1 378449690 1316618..1317013 1 NC_016856.1 phage minor tail protein G 1317013 588858001569 STM14_1468 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage minor tail protein G YP_005237049.1 1316618 D 588858 CDS YP_005237050.2 410023175 1317034..1317348 1 NC_016856.1 minor tail-like protein 1317348 588858001570 STM14_1469 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S minor tail-like protein YP_005237050.2 1317034 D 588858 CDS YP_005237051.1 378449692 1317320..1320415 1 NC_016856.1 phage tail component H-like protein 1320415 588858001571 STM14_1470 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage tail component H-like protein YP_005237051.1 1317320 D 588858 CDS YP_005237052.1 378449693 1320418..1320747 1 NC_016856.1 phage tail component M-like protein 1320747 588858001572 STM14_1471 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage tail component M-like protein YP_005237052.1 1320418 D 588858 CDS YP_005237053.2 410023176 1320757..1321455 1 NC_016856.1 phage tail component L-like protein 1321455 588858001573 STM14_1472 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage tail component L-like protein YP_005237053.2 1320757 D 588858 CDS YP_005237054.1 378449695 complement(1321447..1322052) 1 NC_016856.1 hypothetical protein 1322052 588858001574 STM14_1473 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237054.1 1321447 R 588858 CDS YP_005237055.1 378449696 1322136..1322744 1 NC_016856.1 tail assembly protein I-like protein 1322744 588858001575 STM14_1474 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tail assembly protein I-like protein YP_005237055.1 1322136 D 588858 CDS YP_005237056.1 378449697 1322806..1326168 1 NC_016856.1 host specificity protein 1326168 588858001576 STM14_1475 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S host specificity protein YP_005237056.1 1322806 D 588858 CDS YP_005237057.1 378449698 1326207..1326449 1 NC_016856.1 similar to conserved hypothetical prophage protein [Phage Gifsy-2]; hypothetical protein 1326449 588858001577 STM14_1476 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237057.1 1326207 D 588858 CDS YP_005237058.1 378449699 1326457..1326636 1 NC_016856.1 hypothetical protein 1326636 588858001578 STM14_1477 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237058.1 1326457 D 588858 CDS YP_005237059.2 410023177 1326503..1328944 1 NC_016856.1 side tail fiber protein 1328944 588858001579 STM14_1478 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S side tail fiber protein YP_005237059.2 1326503 D 588858 CDS YP_005237060.1 378449701 1328944..1329528 1 NC_016856.1 phage tail assembly-like protein 1329528 588858001580 STM14_1479 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage tail assembly-like protein YP_005237060.1 1328944 D 588858 CDS YP_005237061.1 378449702 complement(1329626..1329826) 1 NC_016856.1 PagJ 1329826 588858001581 STM14_1480 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S PagJ YP_005237061.1 1329626 R 588858 CDS YP_005237062.2 410023178 1330854..1331156 1 NC_016856.1 hypothetical protein 1331156 588858001582 STM14_1481 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237062.2 1330854 D 588858 CDS YP_005237063.1 378449704 1332051..1334153 1 NC_016856.1 SspH1 1334153 588858001584 STM14_1483 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S SspH1 YP_005237063.1 1332051 D 588858 CDS YP_005237064.1 378449705 complement(1334473..1335144) 1 NC_016856.1 similar to hypothetical protein SPAB_02140 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7]; hypothetical protein 1335144 588858001585 STM14_1484 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237064.1 1334473 R 588858 CDS YP_005237065.1 378449706 1335446..1335610 1 NC_016856.1 isocitrate dehydrogenase 1335610 588858001586 STM14_1485 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S isocitrate dehydrogenase YP_005237065.1 1335446 D 588858 CDS YP_005237066.1 378449707 1336058..1337182 1 NC_016856.1 putative cytoplasmic protein 1337182 588858001587 STM14_1486 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237066.1 1336058 D 588858 CDS YP_005237067.1 378449708 complement(1337214..1337372) 1 NC_016856.1 hypothetical protein 1337372 588858001588 STM14_1487 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237067.1 1337214 R 588858 CDS YP_005237068.1 378449709 1337312..1337452 1 NC_016856.1 hypothetical protein 1337452 588858001589 STM14_1488 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237068.1 1337312 D 588858 CDS YP_005237069.1 378449710 1337337..1337585 1 NC_016856.1 hypothetical protein 1337585 588858001590 STM14_1489 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237069.1 1337337 D 588858 CDS YP_005237070.1 378449711 complement(1338164..1338952) 1 NC_016856.1 probable lipoprotein EnvF precursor (SW:ENVF_SALTY); putative envelope lipoprotein 1338952 envF 588858001591 envF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative envelope lipoprotein YP_005237070.1 1338164 R 588858 CDS YP_005237071.1 378449712 complement(1339441..1339680) 1 NC_016856.1 virulence protein MsgA (SW:MSGA_SALTY); reduced mouse virulence; similar to STM2231 and STM2244; macrophage survival protein 1339680 msgA 588858001593 msgA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S macrophage survival protein YP_005237071.1 1339441 R 588858 CDS YP_005237072.1 378449713 complement(1339871..1340392) 1 NC_016856.1 probable lipoprotein EnvE precursor (SW:ENVE_SALTY); putative envelope protein 1340392 envE 588858001594 envE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative envelope protein YP_005237072.1 1339871 R 588858 CDS YP_005237073.1 378449714 complement(1340405..1340575) 1 NC_016856.1 hypothetical protein 1340575 588858001595 STM14_1494 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237073.1 1340405 R 588858 CDS YP_005237074.1 378449715 complement(1340807..1341019) 1 NC_016856.1 cold shock-like protein CspH (SW:CSPH_SALTY); cold shock-like protein 1341019 588858001596 STM14_1495 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cold shock-like protein YP_005237074.1 1340807 R 588858 CDS YP_005237075.1 378449716 complement(1341060..1341188) 1 NC_016856.1 hypothetical protein 1341188 588858001597 STM14_1496 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237075.1 1341060 R 588858 CDS YP_005237076.1 378449717 complement(1341151..1341414) 1 NC_016856.1 (SW:PAGD_SALTY); PhoP regulated protein; virulence protein PAGD precursor 1341414 pagD 588858001598 pagD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S virulence protein PAGD precursor YP_005237076.1 1341151 R 588858 CDS YP_005237077.1 378449718 1341718..1341825 1 NC_016856.1 hypothetical protein 1341825 588858001600 STM14_1499 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237077.1 1341718 D 588858 CDS YP_005237078.1 378449719 complement(1342043..1342192) 1 NC_016856.1 hypothetical protein 1342192 588858001601 STM14_1500 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237078.1 1342043 R 588858 CDS YP_005237079.1 378449720 1342226..1342783 1 NC_016856.1 (SW:PAGC_SALTY); PhoP regulated; reduced macrophage survival; virulence membrane protein PAGC precursor 1342783 pagC 588858001602 pagC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S virulence membrane protein PAGC precursor YP_005237079.1 1342226 D 588858 CDS YP_005237080.1 378449721 complement(1342962..1343096) 1 NC_016856.1 hypothetical protein 1343096 588858001603 STM14_1502 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237080.1 1342962 R 588858 CDS YP_005237081.1 378449722 complement(1344020..1344364) 1 NC_016856.1 PliC; periplasmic lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1344364 pliC 588858001606 pliC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lysozyme inhibitor YP_005237081.1 1344020 R 588858 CDS YP_005237082.1 378449723 complement(1344493..1344636) 1 NC_016856.1 hypothetical protein 1344636 588858001607 STM14_1506 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237082.1 1344493 R 588858 CDS YP_005237083.1 378449724 1344742..1344867 1 NC_016856.1 putative lipoprotein 1344867 588858001608 STM14_1507 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative lipoprotein YP_005237083.1 1344742 D 588858 CDS YP_005237084.1 378449725 1345067..1345339 1 NC_016856.1 putative cytoplasmic protein 1345339 588858001609 STM14_1508 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237084.1 1345067 D 588858 CDS YP_005237085.1 378449726 1345491..1345958 1 NC_016856.1 similar to Escherichia coli small heat shock protein (AAC76710.1); putative molecular chaperone 1345958 588858001610 STM14_1509 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative molecular chaperone YP_005237085.1 1345491 D 588858 CDS YP_005237086.1 378449727 complement(1346067..1346216) 1 NC_016856.1 putative inner membrane protein 1346216 588858001611 STM14_1510 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237086.1 1346067 R 588858 CDS YP_005237087.1 378449728 1346297..1347340 1 NC_016856.1 putative cytoplasmic protein 1347340 588858001612 STM14_1511 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237087.1 1346297 D 588858 CDS YP_005237088.1 378449729 complement(1347423..1347953) 1 NC_016856.1 similar to Escherichia coli putative cytochrome (AAC75040.1); putative inner membrane protein 1347953 588858001613 STM14_1512 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237088.1 1347423 R 588858 CDS YP_005237089.1 378449730 complement(1348102..1348416) 1 NC_016856.1 putative outer membrane lipoprotein 1348416 588858001614 STM14_1513 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005237089.1 1348102 R 588858 CDS YP_005237090.1 378449731 complement(1348508..1348666) 1 NC_016856.1 hypothetical protein 1348666 588858001615 STM14_1514 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237090.1 1348508 R 588858 CDS YP_005237091.1 378449732 1349098..1350732 1 NC_016856.1 putative substrate-binding protein (gi|2337942); putative ABC transporter periplasmic binding protein 1350732 588858001616 STM14_1515 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter periplasmic binding protein YP_005237091.1 1349098 D 588858 CDS YP_005237092.1 378449733 1350732..1351706 1 NC_016856.1 putative transmembrane protein (gi|2337943); putative ABC transporter protein 1351706 588858001617 STM14_1516 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter protein YP_005237092.1 1350732 D 588858 CDS YP_005237093.1 378449734 1351696..1352508 1 NC_016856.1 putative transmembrane protein (gi|2337944); putative ABC transporter protein 1352508 588858001618 STM14_1517 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter protein YP_005237093.1 1351696 D 588858 CDS YP_005237094.1 378449735 1352502..1353299 1 NC_016856.1 putative ATPase (gi|2337945); contain duplicated ATPase domain; ABC transporter ATP-binding protein 1353299 588858001619 STM14_1518 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ABC transporter ATP-binding protein YP_005237094.1 1352502 D 588858 CDS YP_005237095.1 378449736 1353293..1353883 1 NC_016856.1 putative ATPase (gi|2337946); contains duplicated ATPase domain; ABC transporter ATP-binding protein 1353883 588858001620 STM14_1519 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ABC transporter ATP-binding protein YP_005237095.1 1353293 D 588858 CDS YP_005237096.1 378449737 complement(1353965..1355098) 1 NC_016856.1 putative inner membrane protein 1355098 588858001621 STM14_1520 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237096.1 1353965 R 588858 CDS YP_005237097.1 378449738 1355292..1355618 1 NC_016856.1 putative cytoplasmic protein 1355618 588858001622 STM14_1521 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237097.1 1355292 D 588858 CDS YP_005237098.1 378449739 1355815..1356462 1 NC_016856.1 similar to C-terminus of adhesion lipoprotein; hypothetical protein 1356462 588858001624 STM14_1523 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237098.1 1355815 D 588858 CDS YP_005237099.1 378449740 complement(1356451..1356600) 1 NC_016856.1 hypothetical protein 1356600 588858001625 STM14_1524 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237099.1 1356451 R 588858 CDS YP_005237100.1 378449741 1356571..1357359 1 NC_016856.1 streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 1357359 aadA 588858001626 aadA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aminoglycoside resistance protein YP_005237100.1 1356571 D 588858 CDS YP_005237101.1 378449742 1357504..1358097 1 NC_016856.1 contains CheY-like receiver domain and HTH DNA-binding domain; putative response regulator 1358097 588858001627 STM14_1526 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative response regulator YP_005237101.1 1357504 D 588858 CDS YP_005237102.1 378449743 1358166..1359014 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator (AAC74246.1); putative transcriptional regulator 1359014 588858001628 STM14_1527 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005237102.1 1358166 D 588858 CDS YP_005237103.1 378449744 1358977..1359201 1 NC_016856.1 hypothetical protein 1359201 588858001629 STM14_1528 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237103.1 1358977 D 588858 CDS YP_005237104.1 378449745 complement(1359269..1359517) 1 NC_016856.1 putative cytoplasmic protein 1359517 588858001630 STM14_1529 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237104.1 1359269 R 588858 CDS YP_005237105.1 378449746 complement(1359596..1359745) 1 NC_016856.1 putative cytoplasmic protein 1359745 588858001631 STM14_1530 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237105.1 1359596 R 588858 CDS YP_005237106.1 378449747 1359828..1360373 1 NC_016856.1 catalyzes the interconversion of chorismate to prephenate; chorismate mutase 1360373 588858001632 STM14_1531 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chorismate mutase YP_005237106.1 1359828 D 588858 CDS YP_005237107.1 378449748 1360570..1361208 1 NC_016856.1 leucine export protein LeuE 1361208 yeaS 588858001633 yeaS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S leucine export protein LeuE YP_005237107.1 1360570 D 588858 CDS YP_005237108.1 378449749 complement(1361225..1361380) 1 NC_016856.1 hypothetical protein 1361380 588858001634 STM14_1533 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237108.1 1361225 R 588858 CDS YP_005237109.1 378449750 1361381..1361743 1 NC_016856.1 putative cytoplasmic protein 1361743 yeaR 588858001635 yeaR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237109.1 1361381 D 588858 CDS YP_005237110.1 378449751 1361746..1361928 1 NC_016856.1 putative cytoplasmic protein 1361928 yoaG 588858001636 yoaG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237110.1 1361746 D 588858 CDS YP_005237111.1 378449752 complement(1362034..1362159) 1 NC_016856.1 hypothetical protein 1362159 588858001637 STM14_1536 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237111.1 1362034 R 588858 CDS YP_005237112.1 378449753 1362158..1362799 1 NC_016856.1 putative nitric oxide reductase 1362799 588858001638 STM14_1537 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative nitric oxide reductase YP_005237112.1 1362158 D 588858 CDS YP_005237113.1 378449754 1362921..1363106 1 NC_016856.1 hypothetical protein 1363106 588858001639 STM14_1538 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237113.1 1362921 D 588858 CDS YP_005237114.1 378449755 1363114..1363362 1 NC_016856.1 hypothetical protein 1363362 yeaQ 588858001640 yeaQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237114.1 1363114 D 588858 CDS YP_005237115.1 378449756 complement(1363413..1363529) 1 NC_016856.1 hypothetical protein 1363529 588858001641 STM14_1540 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237115.1 1363413 R 588858 CDS YP_005237116.1 378449757 complement(1363501..1363599) 1 NC_016856.1 hypothetical protein 1363599 588858001642 STM14_1541 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237116.1 1363501 R 588858 CDS YP_005237117.1 378449758 1363795..1364046 1 NC_016856.1 putative hemolysin 1364046 yaoF 588858001643 yaoF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hemolysin YP_005237117.1 1363795 D 588858 CDS YP_005237118.1 378449759 1364115..1364426 1 NC_016856.1 hypothetical protein 1364426 588858001644 STM14_1543 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237118.1 1364115 D 588858 CDS YP_005237119.1 378449760 complement(1364412..1364759) 1 NC_016856.1 putative cytoplasmic protein 1364759 yeaO 588858001645 yeaO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237119.1 1364412 R 588858 CDS YP_005237120.1 378449761 complement(1364743..1364856) 1 NC_016856.1 hypothetical protein 1364856 588858001646 STM14_1545 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237120.1 1364743 R 588858 CDS YP_005237121.1 378449762 1364774..1364911 1 NC_016856.1 hypothetical protein 1364911 588858001647 STM14_1546 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237121.1 1364774 D 588858 CDS YP_005237122.1 378449763 complement(1364878..1366062) 1 NC_016856.1 similar to Escherichia coli putative amino acid/amine transport protein (AAC74861.1); MFS family; putative amino acid/amine transport protein 1366062 yeaN 588858001648 yeaN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative amino acid/amine transport protein YP_005237122.1 1364878 R 588858 CDS YP_005237123.1 378449764 1366163..1366957 1 NC_016856.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC74860.1); AraC/XylS family; putative regulatory protein 1366957 yeaM 588858001649 yeaM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005237123.1 1366163 D 588858 CDS YP_005237124.1 378449765 complement(1366937..1367383) 1 NC_016856.1 putative inner membrane protein 1367383 yeaL 588858001650 yeaL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237124.1 1366937 R 588858 CDS YP_005237125.1 378449766 1367385..1367522 1 NC_016856.1 hypothetical protein 1367522 588858001651 STM14_1550 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237125.1 1367385 D 588858 CDS YP_005237126.1 378449767 1367589..1367696 1 NC_016856.1 putative inner membrane protein 1367696 588858001652 STM14_1551 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237126.1 1367589 D 588858 CDS YP_005237127.1 378449768 complement(1367693..1368211) 1 NC_016856.1 putative cytoplasmic protein 1368211 yeaK 588858001653 yeaK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237127.1 1367693 R 588858 CDS YP_005237128.1 378449769 complement(1368261..1369754) 1 NC_016856.1 contains diguanylate cyclase/phosphodiesterase domain 1; putative methyl-accepting chemotaxis protein 1369754 yeaJ 588858001654 yeaJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative methyl-accepting chemotaxis protein YP_005237128.1 1368261 R 588858 CDS YP_005237129.1 378449770 1370048..1370245 1 NC_016856.1 hypothetical protein 1370245 588858001655 STM14_1554 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237129.1 1370048 D 588858 CDS YP_005237130.1 378449771 1370136..1370267 1 NC_016856.1 salivary secreted protein 1370267 588858001656 STM14_1555 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S salivary secreted protein YP_005237130.1 1370136 D 588858 CDS YP_005237131.1 378449772 complement(1370395..1371681) 1 NC_016856.1 hypothetical protein 1371681 yeaH 588858001657 yeaH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237131.1 1370395 R 588858 CDS YP_005237132.1 378449773 1371682..1371801 1 NC_016856.1 hypothetical protein 1371801 588858001658 STM14_1557 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237132.1 1371682 D 588858 CDS YP_005237133.1 378449774 complement(1371804..1373738) 1 NC_016856.1 putative serine protein kinase 1373738 yeaG 588858001659 yeaG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative serine protein kinase YP_005237133.1 1371804 R 588858 CDS YP_005237134.1 378449775 complement(1373854..1374027) 1 NC_016856.1 hypothetical protein 1374027 588858001660 STM14_1559 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237134.1 1373854 R 588858 CDS YP_005237135.1 378449776 1374166..1374912 1 NC_016856.1 scaffolding protein for murein-synthesizing holoenzyme; MltA-interacting protein A 1374912 mipA 588858001661 mipA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S MltA-interacting protein A YP_005237135.1 1374166 D 588858 CDS YP_005237136.1 378449777 1375202..1376398 1 NC_016856.1 similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1); arylsulfatase regulator 1376398 588858001662 STM14_1561 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S arylsulfatase regulator YP_005237136.1 1375202 D 588858 CDS YP_005237137.1 378449778 1376495..1377352 1 NC_016856.1 similar to Escherichia coli putative aldehyde reductase (AAC74851.1); putative aldehyde reductase 1377352 588858001663 STM14_1562 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative aldehyde reductase YP_005237137.1 1376495 D 588858 CDS YP_005237138.1 378449779 complement(1377451..1378335) 1 NC_016856.1 aldose 1-epimerase 1378335 yeaD 588858001664 yeaD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aldose 1-epimerase YP_005237138.1 1377451 R 588858 CDS YP_005237139.1 378449780 complement(1378335..1378511) 1 NC_016856.1 hypothetical protein 1378511 588858001665 STM14_1564 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237139.1 1378335 R 588858 CDS YP_005237140.1 378449781 complement(1378670..1379665) 1 NC_016856.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 1379665 gapA 588858001666 gapA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glyceraldehyde-3-phosphate dehydrogenase YP_005237140.1 1378670 R 588858 CDS YP_005237141.1 378449782 1379655..1379795 1 NC_016856.1 hypothetical protein 1379795 588858001667 STM14_1566 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237141.1 1379655 D 588858 CDS YP_005237142.1 378449783 1379977..1380420 1 NC_016856.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1380420 yeaA 588858001668 yeaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S methionine sulfoxide reductase B YP_005237142.1 1379977 D 588858 CDS YP_005237143.1 378449784 1380462..1380740 1 NC_016856.1 putative cytoplasmic protein 1380740 yeaC 588858001669 yeaC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237143.1 1380462 D 588858 CDS YP_005237144.1 378449785 1380898..1381002 1 NC_016856.1 hypothetical protein 1381002 588858001670 STM14_1569 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237144.1 1380898 D 588858 CDS YP_005237145.1 378449786 complement(1381091..1381747) 1 NC_016856.1 catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis; nicotinamidase/pyrazinamidase 1381747 pncA 588858001671 pncA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nicotinamidase/pyrazinamidase YP_005237145.1 1381091 R 588858 CDS YP_005237146.1 378449787 complement(1381774..1382790) 1 NC_016856.1 converts asparagine to aspartate and ammonia; asparaginase 1382790 ansA 588858001672 ansA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S asparaginase YP_005237146.1 1381774 R 588858 CDS YP_005237147.1 378449788 1382785..1382889 1 NC_016856.1 hypothetical protein 1382889 588858001673 STM14_1572 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237147.1 1382785 D 588858 CDS YP_005237148.1 378449789 complement(1382886..1384742) 1 NC_016856.1 SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; protease 4 1384742 sppA 588858001674 sppA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S protease 4 YP_005237148.1 1382886 R 588858 CDS YP_005237149.1 378449790 1384916..1385467 1 NC_016856.1 hypothetical protein 1385467 ydjA 588858001675 ydjA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237149.1 1384916 D 588858 CDS YP_005237150.1 378449791 1385585..1386628 1 NC_016856.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 1386628 selD 588858001676 selD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S selenophosphate synthetase YP_005237150.1 1385585 D 588858 CDS YP_005237151.1 378449792 1386633..1388582 1 NC_016856.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 1388582 topB 588858001677 topB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA topoisomerase III YP_005237151.1 1386633 D 588858 CDS YP_005237152.1 378449793 complement(1388612..1389955) 1 NC_016856.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1389955 gdhA 588858001678 gdhA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamate dehydrogenase YP_005237152.1 1388612 R 588858 CDS YP_005237153.1 378449794 1390194..1390469 1 NC_016856.1 hypothetical protein 1390469 588858001679 STM14_1578 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237153.1 1390194 D 588858 CDS YP_005237154.1 378449795 complement(1390429..1390845) 1 NC_016856.1 MutT; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase 1390845 588858001680 STM14_1579 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase YP_005237154.1 1390429 R 588858 CDS YP_005237155.1 378449796 complement(1390918..1391724) 1 NC_016856.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 1391724 xthA 588858001681 xthA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S exonuclease III YP_005237155.1 1390918 R 588858 CDS YP_005237156.1 378449797 1391859..1392038 1 NC_016856.1 hypothetical protein 1392038 588858001682 STM14_1581 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237156.1 1391859 D 588858 CDS YP_005237157.1 378449798 1392170..1393396 1 NC_016856.1 catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate; bifunctional succinylornithine transaminase/acetylornithine transaminase 1393396 argD_1 588858001683 argD_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional succinylornithine transaminase/acetylornithine transaminase YP_005237157.1 1392170 D 588858 CDS YP_005237158.1 378449799 1393387..1394421 1 NC_016856.1 arginine succinyltransferase 1394421 astA 588858001684 astA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S arginine succinyltransferase YP_005237158.1 1393387 D 588858 CDS YP_005237159.1 378449800 1394418..1395896 1 NC_016856.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 1395896 astD 588858001685 astD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S succinylglutamic semialdehyde dehydrogenase YP_005237159.1 1394418 D 588858 CDS YP_005237160.1 378449801 1395893..1397236 1 NC_016856.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 1397236 astB 588858001686 astB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S succinylarginine dihydrolase YP_005237160.1 1395893 D 588858 CDS YP_005237161.1 378449802 1397229..1398197 1 NC_016856.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1398197 astE 588858001687 astE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S succinylglutamate desuccinylase YP_005237161.1 1397229 D 588858 CDS YP_005237162.1 378449803 1398234..1398449 1 NC_016856.1 hypothetical protein 1398449 588858001688 STM14_1587 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237162.1 1398234 D 588858 CDS YP_005237163.1 378449804 1398533..1399018 1 NC_016856.1 periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP; hypothetical protein 1399018 spy 588858001689 spy Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237163.1 1398533 D 588858 CDS YP_005237164.1 378449805 complement(1399093..1400001) 1 NC_016856.1 3' incision activity; acts with UvrC; nucleotide excision repair endonuclease 1400001 588858001690 STM14_1589 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nucleotide excision repair endonuclease YP_005237164.1 1399093 R 588858 CDS YP_005237165.1 378449806 complement(1400095..1400922) 1 NC_016856.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1400922 nadE 588858001691 nadE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NAD synthetase YP_005237165.1 1400095 R 588858 CDS YP_005237166.1 378449807 complement(1400923..1401129) 1 NC_016856.1 hypothetical protein 1401129 588858001692 STM14_1591 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237166.1 1400923 R 588858 CDS YP_005237167.1 378449808 1401141..1401482 1 NC_016856.1 osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 1401482 osmE 588858001693 osmE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional activator OsmE YP_005237167.1 1401141 D 588858 CDS YP_005237168.1 378449809 1401610..1401732 1 NC_016856.1 hypothetical protein 1401732 588858001694 STM14_1593 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237168.1 1401610 D 588858 CDS YP_005237169.1 378449810 1401783..1402103 1 NC_016856.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB 1402103 celA 588858001695 celA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB YP_005237169.1 1401783 D 588858 CDS YP_005237170.1 378449811 1402186..1403544 1 NC_016856.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC 1403544 celB 588858001696 celB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC YP_005237170.1 1402186 D 588858 CDS YP_005237171.1 378449812 1403595..1403942 1 NC_016856.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA 1403942 celC 588858001697 celC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA YP_005237171.1 1403595 D 588858 CDS YP_005237172.1 378449813 1403953..1404795 1 NC_016856.1 represses the celABCDF-ydjC operon involved in carbon uptake; DNA-binding transcriptional regulator ChbR 1404795 celD 588858001698 celD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator ChbR YP_005237172.1 1403953 D 588858 CDS YP_005237173.1 378449814 1404920..1406275 1 NC_016856.1 similar to Escherichia coli phospho-beta-glucosidase; cryptic (AAC74804.1); phospho-beta-glucosidase/cellobiose-6-phosphate hydrolase 1406275 celF 588858001699 celF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phospho-beta-glucosidase/cellobiose-6-phosphate hydrolase YP_005237173.1 1404920 D 588858 CDS YP_005237174.1 378449815 1406288..1407046 1 NC_016856.1 hypothetical protein 1407046 celG 588858001700 celG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237174.1 1406288 D 588858 CDS YP_005237175.1 378449816 complement(1407090..1409342) 1 NC_016856.1 Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II 1409342 katE 588858001701 katE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydroperoxidase II YP_005237175.1 1407090 R 588858 CDS YP_005237176.1 378449817 1409372..1409509 1 NC_016856.1 hypothetical protein 1409509 588858001702 STM14_1601 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237176.1 1409372 D 588858 CDS YP_005237177.1 378449818 complement(1409399..1409647) 1 NC_016856.1 hypothetical protein 1409647 588858001703 STM14_1602 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237177.1 1409399 R 588858 CDS YP_005237178.1 378449819 1409707..1409949 1 NC_016856.1 affects inhibition after overreplication of chromosome in dnaAcos mutants; cell division modulator 1409949 cedA 588858001704 cedA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell division modulator YP_005237178.1 1409707 D 588858 CDS YP_005237179.1 378449820 complement(1410051..1411442) 1 NC_016856.1 similar to Escherichia coli part of a kinase (AAC74799.1); kinase/transporter-like protein 1411442 ydjN 588858001705 ydjN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S kinase/transporter-like protein YP_005237179.1 1410051 R 588858 CDS YP_005237180.1 378449821 complement(1411579..1412166) 1 NC_016856.1 LexA-regulated gene; hypothetical protein 1412166 ydjM 588858001706 ydjM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237180.1 1411579 R 588858 CDS YP_005237181.1 378449822 complement(1412316..1412984) 1 NC_016856.1 YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase 1412984 yniC 588858001707 yniC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-deoxyglucose-6-phosphatase YP_005237181.1 1412316 R 588858 CDS YP_005237182.1 378449823 1413133..1413669 1 NC_016856.1 putative regulatory protein 1413669 yniB 588858001708 yniB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005237182.1 1413133 D 588858 CDS YP_005237183.1 378449824 complement(1413712..1414572) 1 NC_016856.1 putative cytoplasmic protein 1414572 588858001709 STM14_1608 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237183.1 1413712 R 588858 CDS YP_005237184.1 378449825 complement(1414679..1414969) 1 NC_016856.1 putative cytoplasmic protein 1414969 ydiZ 588858001710 ydiZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237184.1 1414679 R 588858 CDS YP_005237185.1 378449826 complement(1415066..1415998) 1 NC_016856.1 similar to Escherichia coli 6-phosphofructokinase II; suppressor of pfkA (AAC74793.1); 6-phosphofructokinase 1415998 pfkB 588858001711 pfkB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 6-phosphofructokinase YP_005237185.1 1415066 R 588858 CDS YP_005237186.1 378449827 1416287..1417045 1 NC_016856.1 salt-inducible; putative outer membrane protein 1417045 ydiY 588858001712 ydiY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005237186.1 1416287 D 588858 CDS YP_005237187.1 378449828 complement(1417094..1418053) 1 NC_016856.1 putative outer membrane protein 1418053 588858001713 STM14_1612 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005237187.1 1417094 R 588858 CDS YP_005237188.1 378449829 1418196..1418510 1 NC_016856.1 putative inner membrane protein 1418510 588858001714 STM14_1613 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237188.1 1418196 D 588858 CDS YP_005237189.1 378449830 1418507..1419361 1 NC_016856.1 putative DNA/RNA non-specific endonuclease 1419361 588858001715 STM14_1614 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA/RNA non-specific endonuclease YP_005237189.1 1418507 D 588858 CDS YP_005237190.1 378449831 1419534..1419740 1 NC_016856.1 hypothetical protein 1419740 588858001716 STM14_1615 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237190.1 1419534 D 588858 CDS YP_005237191.1 378449832 complement(1420063..1421286) 1 NC_016856.1 O-antigen polymerase (SW:RFC_SALTY); O-antigen polymerase 1421286 rfc 588858001717 rfc Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S O-antigen polymerase YP_005237191.1 1420063 R 588858 CDS YP_005237192.1 378449833 1421769..1421954 1 NC_016856.1 hypothetical protein 1421954 588858001718 STM14_1617 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237192.1 1421769 D 588858 CDS YP_005237193.1 378449834 1421956..1422090 1 NC_016856.1 hypothetical protein 1422090 588858001719 STM14_1618 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237193.1 1421956 D 588858 CDS YP_005237194.1 378449835 1422178..1424106 1 NC_016856.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 1424106 thrS 588858001720 thrS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S threonyl-tRNA synthetase YP_005237194.1 1422178 D 588858 CDS YP_005237195.1 378449836 1424110..1424652 1 NC_016856.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1424652 infC 588858001721 infC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S translation initiation factor IF-3 YP_005237195.1 1424110 D 588858 CDS YP_005237196.1 378449837 1424748..1424945 1 NC_016856.1 similar to Escherichia coli 50S ribosomal subunit protein A (AAC74787.1); 50S ribosomal protein L35 1424945 rpmI 588858001722 rpmI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L35 YP_005237196.1 1424748 D 588858 CDS YP_005237197.1 378449838 1424996..1425352 1 NC_016856.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1425352 rplT 588858001723 rplT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L20 YP_005237197.1 1424996 D 588858 CDS YP_005237198.1 378449839 complement(1425398..1425562) 1 NC_016856.1 hypothetical protein 1425562 588858001724 STM14_1623 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237198.1 1425398 R 588858 CDS YP_005237199.1 378449840 1425654..1426637 1 NC_016856.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1426637 pheS 588858001725 pheS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phenylalanyl-tRNA synthetase subunit alpha YP_005237199.1 1425654 D 588858 CDS YP_005237200.1 378449841 1426653..1429040 1 NC_016856.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1429040 pheT 588858001726 pheT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phenylalanyl-tRNA synthetase subunit beta YP_005237200.1 1426653 D 588858 CDS YP_005237201.1 378449842 1429045..1429344 1 NC_016856.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 1429344 ihfA 588858001727 ihfA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S integration host factor subunit alpha YP_005237201.1 1429045 D 588858 CDS YP_005237202.1 378449843 1429547..1430527 1 NC_016856.1 with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12-transporter permease 1430527 btuC 588858001728 btuC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S vtamin B12-transporter permease YP_005237202.1 1429547 D 588858 CDS YP_005237203.1 378449844 1430619..1431170 1 NC_016856.1 similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; putative glutathione peroxidase 1431170 btuE 588858001729 btuE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glutathione peroxidase YP_005237203.1 1430619 D 588858 CDS YP_005237204.1 378449845 1431170..1431919 1 NC_016856.1 ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12-transporter ATPase 1431919 btuD 588858001730 btuD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S vitamin B12-transporter ATPase YP_005237204.1 1431170 D 588858 CDS YP_005237205.1 378449846 1431996..1432460 1 NC_016856.1 similar to Escherichia coli lipoprotein (AAC74778.1); lipoprotein 1432460 nlpC 588858001731 nlpC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipoprotein YP_005237205.1 1431996 D 588858 CDS YP_005237206.1 378449847 complement(1432577..1432696) 1 NC_016856.1 hypothetical protein 1432696 588858001732 STM14_1631 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237206.1 1432577 R 588858 CDS YP_005237207.1 378449848 1432774..1433487 1 NC_016856.1 putative diguanylate cyclase/phosphodiesterase domain 1; hypothetical protein 1433487 ydiV 588858001733 ydiV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237207.1 1432774 D 588858 CDS YP_005237208.1 378449849 1433549..1434991 1 NC_016856.1 hypothetical protein 1434991 ydiU 588858001734 ydiU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237208.1 1433549 D 588858 CDS YP_005237209.1 378449850 complement(1435026..1435217) 1 NC_016856.1 hypothetical protein 1435217 ydiE 588858001735 ydiE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237209.1 1435026 R 588858 CDS YP_005237210.1 378449851 complement(1435374..1436420) 1 NC_016856.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 1436420 aroH 588858001736 aroH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phospho-2-dehydro-3-deoxyheptonate aldolase YP_005237210.1 1435374 R 588858 CDS YP_005237211.1 378449852 1436467..1436571 1 NC_016856.1 hypothetical protein 1436571 588858001737 STM14_1636 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237211.1 1436467 D 588858 CDS YP_005237212.1 378449853 complement(1436576..1437409) 1 NC_016856.1 hypothetical protein 1437409 ydiA 588858001738 ydiA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237212.1 1436576 R 588858 CDS YP_005237213.1 378449854 complement(1437586..1437699) 1 NC_016856.1 hypothetical protein 1437699 588858001739 STM14_1638 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237213.1 1437586 R 588858 CDS YP_005237214.1 378449855 1437746..1440124 1 NC_016856.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1440124 pps 588858001740 pps Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoenolpyruvate synthase YP_005237214.1 1437746 D 588858 CDS YP_005237215.1 378449856 complement(1440166..1441806) 1 NC_016856.1 acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids; short chain acyl-CoA synthetase 1441806 ydiD 588858001741 ydiD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S short chain acyl-CoA synthetase YP_005237215.1 1440166 R 588858 CDS YP_005237216.1 378449857 complement(1441896..1442189) 1 NC_016856.1 putative ferredoxin 1442189 ydiT 588858001742 ydiT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ferredoxin YP_005237216.1 1441896 R 588858 CDS YP_005237217.1 378449858 complement(1442186..1443472) 1 NC_016856.1 similar to Escherichia coli flavoprotein; probably electron transport (AAC74769.1); hypothetical protein 1443472 ydiS 588858001743 ydiS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237217.1 1442186 R 588858 CDS YP_005237218.1 378449859 complement(1443529..1444464) 1 NC_016856.1 May play a role in a redox process; electron transfer flavoprotein subunit YdiR 1444464 ydiR 588858001744 ydiR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S electron transfer flavoprotein subunit YdiR YP_005237218.1 1443529 R 588858 CDS YP_005237219.1 378449860 complement(1444486..1445250) 1 NC_016856.1 YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; putative electron transfer flavoprotein YdiQ 1445250 ydiQ 588858001745 ydiQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative electron transfer flavoprotein YdiQ YP_005237219.1 1444486 R 588858 CDS YP_005237220.1 378449861 complement(1445506..1445658) 1 NC_016856.1 hypothetical protein 1445658 588858001746 STM14_1645 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237220.1 1445506 R 588858 CDS YP_005237221.1 378449862 1445713..1446603 1 NC_016856.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC74766.1); AraC family; putative transcriptional regulator 1446603 ydiP 588858001747 ydiP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005237221.1 1445713 D 588858 CDS YP_005237222.1 378449863 complement(1446679..1447830) 1 NC_016856.1 may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; putative acyl-CoA dehydrogenase 1447830 ydiO 588858001748 ydiO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative acyl-CoA dehydrogenase YP_005237222.1 1446679 R 588858 CDS YP_005237223.1 378449864 complement(1447844..1449439) 1 NC_016856.1 similar to Escherichia coli putative enzyme (AAC74764.1); putative acetyl-CoA/acetoacetyl-CoA transferase beta subunit 1449439 ydiF 588858001749 ydiF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative acetyl-CoA/acetoacetyl-CoA transferase beta subunit YP_005237223.1 1447844 R 588858 CDS YP_005237224.1 378449865 complement(1449593..1450351) 1 NC_016856.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 1450351 aroD 588858001750 aroD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-dehydroquinate dehydratase YP_005237224.1 1449593 R 588858 CDS YP_005237225.1 378449866 complement(1450396..1451262) 1 NC_016856.1 YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate; quinate/shikimate dehydrogenase 1451262 aroE_1 588858001751 aroE_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S quinate/shikimate dehydrogenase YP_005237225.1 1450396 R 588858 CDS YP_005237226.1 378449867 complement(1451329..1452564) 1 NC_016856.1 similar to Escherichia coli putative amino acid/amine transport protein (AAC74761.1); MFS family; putative transport protein 1452564 ydiN 588858001752 ydiN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005237226.1 1451329 R 588858 CDS YP_005237227.1 378449868 1452598..1452744 1 NC_016856.1 hypothetical protein 1452744 588858001753 STM14_1652 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237227.1 1452598 D 588858 CDS YP_005237228.1 378449869 complement(1452728..1452838) 1 NC_016856.1 hypothetical protein 1452838 588858001754 STM14_1653 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237228.1 1452728 R 588858 CDS YP_005237229.1 378449870 complement(1452928..1454139) 1 NC_016856.1 similar to Escherichia coli putative transport system permease protein (AAC74760.1); MFS family; putative transport protein 1454139 ydiM 588858001755 ydiM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005237229.1 1452928 R 588858 CDS YP_005237230.1 378449871 complement(1454280..1454639) 1 NC_016856.1 putative cytoplasmic protein 1454639 ydiL 588858001756 ydiL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237230.1 1454280 R 588858 CDS YP_005237231.1 378449872 complement(1455097..1456215) 1 NC_016856.1 YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; putative inner membrane protein 1456215 ydiK 588858001758 ydiK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237231.1 1455097 R 588858 CDS YP_005237232.1 378449873 complement(1456308..1456475) 1 NC_016856.1 hypothetical protein 1456475 588858001759 STM14_1658 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237232.1 1456308 R 588858 CDS YP_005237233.1 378449874 1456480..1459536 1 NC_016856.1 similar to Escherichia coli putative oxidase (AAC74757.1); putative oxidase 1459536 ydiJ 588858001760 ydiJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative oxidase YP_005237233.1 1456480 D 588858 CDS YP_005237234.1 378449875 1459533..1459943 1 NC_016856.1 possibly involved in aromatic compounds catabolism; PaaI; hypothetical protein 1459943 588858001761 STM14_1660 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237234.1 1459533 D 588858 CDS YP_005237235.1 378449876 1460003..1460230 1 NC_016856.1 putative cytoplasmic protein 1460230 ydiH 588858001762 ydiH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237235.1 1460003 D 588858 CDS YP_005237236.1 378449877 complement(1460518..1461864) 1 NC_016856.1 similar to Escherichia coli part of a kinase (AAC74799.1); putative Na+-dicarboxylate symporter 1461864 588858001763 STM14_1662 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative Na+-dicarboxylate symporter YP_005237236.1 1460518 R 588858 CDS YP_005237237.1 378449878 1462291..1462659 1 NC_016856.1 functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein; iron-sulfur cluster assembly scaffold protein 1462659 sufA 588858001764 sufA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S iron-sulfur cluster assembly scaffold protein YP_005237237.1 1462291 D 588858 CDS YP_005237238.1 378449879 1462668..1464155 1 NC_016856.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 1464155 sufB 588858001765 sufB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cysteine desulfurase activator complex subunit SufB YP_005237238.1 1462668 D 588858 CDS YP_005237239.1 378449880 1464172..1464918 1 NC_016856.1 part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase 1464918 sufC 588858001766 sufC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cysteine desulfurase YP_005237239.1 1464172 D 588858 CDS YP_005237240.1 378449881 1464893..1466164 1 NC_016856.1 with SufBC activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufD 1466164 sufD 588858001767 sufD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cysteine desulfurase activator complex subunit SufD YP_005237240.1 1464893 D 588858 CDS YP_005237241.1 378449882 1466161..1467381 1 NC_016856.1 catalyzes the formation of L-alanine and selenide from selenocysteine; selenocysteine lyase 1467381 sufS 588858001768 sufS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S selenocysteine lyase YP_005237241.1 1466161 D 588858 CDS YP_005237242.1 378449883 1467394..1467810 1 NC_016856.1 Acts with SufS to catalyze the formation of L-alanine from L-cysteine; cysteine desufuration protein SufE 1467810 ynhA 588858001769 ynhA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cysteine desufuration protein SufE YP_005237242.1 1467394 D 588858 CDS YP_005237243.1 378449884 1467965..1468966 1 NC_016856.1 contains putative LysM domain; hypothetical protein 1468966 ynhG 588858001770 ynhG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237243.1 1467965 D 588858 CDS YP_005237244.1 378449885 complement(1469033..1469272) 1 NC_016856.1 similar to Escherichia coli murein lipoprotein (AAC74747.1); putative methyl-accepting chemotaxis protein 1469272 lppB 588858001771 lppB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative methyl-accepting chemotaxis protein YP_005237244.1 1469033 R 588858 CDS YP_005237245.1 378449886 complement(1469355..1469591) 1 NC_016856.1 similar to Escherichia coli murein lipoprotein (AAC74747.1); murein lipoprotein 1469591 lpp 588858001772 lpp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S murein lipoprotein YP_005237245.1 1469355 R 588858 CDS YP_005237246.1 378449887 complement(1469902..1471314) 1 NC_016856.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1471314 pykF 588858001773 pykF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyruvate kinase YP_005237246.1 1469902 R 588858 CDS YP_005237247.1 378449888 complement(1471716..1473059) 1 NC_016856.1 amino acid permease YeeF-like protein (gi|1526981); putative amino acid permease 1473059 orf48 588858001774 orf48 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative amino acid permease YP_005237247.1 1471716 R 588858 CDS YP_005237248.1 378449889 complement(1473081..1473974) 1 NC_016856.1 hydrolase or acyltransferase (gi|1526980); putative proline iminopeptidase 1473974 orf32 588858001775 orf32 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative proline iminopeptidase YP_005237248.1 1473081 R 588858 CDS YP_005237249.1 378449890 complement(1474033..1474770) 1 NC_016856.1 ORF 245 (gi|4456875); similar to STM3548; putative cytoplasmic protein 1474770 orf245 588858001776 orf245 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237249.1 1474033 R 588858 CDS YP_005237250.1 378449891 complement(1474782..1476008) 1 NC_016856.1 ORF 408 (gi|4456874); DeoR family; putative regulatory protein 1476008 orf408 588858001777 orf408 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005237250.1 1474782 R 588858 CDS YP_005237251.1 378449892 complement(1476331..1479393) 1 NC_016856.1 tetrathionate reductase subunit A; TtrA (gi|4456873); tetrathionate reductase complex subunit A 1479393 ttrA 588858001778 ttrA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tetrathionate reductase complex subunit A YP_005237251.1 1476331 R 588858 CDS YP_005237252.1 378449893 complement(1479386..1480408) 1 NC_016856.1 tetrathionate reductase subunit C; TtrC (gi|4456872); tetrathionate reductase complex subunit C 1480408 ttrC 588858001779 ttrC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tetrathionate reductase complex subunit C YP_005237252.1 1479386 R 588858 CDS YP_005237253.1 378449894 complement(1480409..1481161) 1 NC_016856.1 tetrathionate reductase subunit B; TtrB (gi|4456871); tetrathionate reductase complex subunit B 1481161 ttrB 588858001780 ttrB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tetrathionate reductase complex subunit B YP_005237253.1 1480409 R 588858 CDS YP_005237254.1 378449895 1481325..1483103 1 NC_016856.1 tetrathionate reductase complex; TtrS (gi|4456870); two-component regulatory system; sensory histidine kinase 1483103 ttrS 588858001781 ttrS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sensory histidine kinase YP_005237254.1 1481325 D 588858 CDS YP_005237255.1 378449896 1483060..1483698 1 NC_016856.1 tetrathionate reductase complex; TtrR (gi|4456869); two-component regulatory system; response regulator 1483698 ttrR 588858001782 ttrR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S response regulator YP_005237255.1 1483060 D 588858 CDS YP_005237256.1 378449897 1483796..1484008 1 NC_016856.1 hypothetical 7.9 kDa protein in ssrB-ttRr intergenic region (ORF70) (SW:YDHZ_SALTY); hypothetical protein 1484008 orf70 588858001783 orf70 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237256.1 1483796 D 588858 CDS YP_005237257.1 378449898 complement(1484104..1485063) 1 NC_016856.1 ORF 319 (gi|4456867); putative inner membrane protein 1485063 orf319 588858001784 orf319 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237257.1 1484104 R 588858 CDS YP_005237258.1 378449899 complement(1485236..1485964) 1 NC_016856.1 ORF 242 (gi|4456866); merR family; putative regulatory protein 1485964 orf242 588858001785 orf242 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005237258.1 1485236 R 588858 CDS YP_005237259.1 378449900 complement(1486016..1486129) 1 NC_016856.1 hypothetical protein 1486129 588858001786 STM14_1685 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237259.1 1486016 R 588858 CDS YP_005237260.1 378449901 complement(1486143..1486781) 1 NC_016856.1 SsrB (gi|2765824); type III secretion system regulator; similar to DegU/UvrY/BvgA; regulated by OmpR-EnvZ; controls regulation of SPI-2 expression; transcriptional activator 1486781 ssrB 588858001787 ssrB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional activator YP_005237260.1 1486143 R 588858 CDS YP_005237261.1 378449902 complement(1486812..1489574) 1 NC_016856.1 SpiR (gi|1498305); type III secretion system regulator; regulated by OmpR-EnvZ; sensor kinase 1489574 ssrA 588858001788 ssrA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sensor kinase YP_005237261.1 1486812 R 588858 CDS YP_005237262.1 378449903 1489975..1490376 1 NC_016856.1 Salmonella typhimurium SpiC (gi|1498306); effects secretion of other SPI-2 proteins; interacts with host cell TassC and Hook3 proteins; type III secretion; prevents fusion of endosome/lysosome with Salmonella-containing vacuoles; secreted effector protein 1490376 ssaB 588858001789 ssaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secreted effector protein YP_005237262.1 1489975 D 588858 CDS YP_005237263.1 378449904 1490378..1491871 1 NC_016856.1 SpiA (gi|1498307); type III secretion system apparatus; outer membrane secretin precursor 1491871 ssaC 588858001790 ssaC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane secretin precursor YP_005237263.1 1490378 D 588858 CDS YP_005237264.1 378449905 1491852..1493063 1 NC_016856.1 SpiB (gi|1498308); type III secretion system; virulence protein 1493063 ssaD 588858001791 ssaD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S virulence protein YP_005237264.1 1491852 D 588858 CDS YP_005237265.1 378449906 1493071..1493313 1 NC_016856.1 putative secretory apparatus component (gi|3377860); secretion system effector 1493313 ssaE 588858001792 ssaE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secretion system effector YP_005237265.1 1493071 D 588858 CDS YP_005237266.1 378449907 1493410..1493517 1 NC_016856.1 hypothetical protein 1493517 588858001793 STM14_1692 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237266.1 1493410 D 588858 CDS YP_005237267.1 378449908 1493577..1493903 1 NC_016856.1 secretion system chaperone protein 1493903 588858001794 STM14_1693 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secretion system chaperone protein YP_005237267.1 1493577 D 588858 CDS YP_005237268.1 378449909 1493910..1494500 1 NC_016856.1 putative secreted protein (gi|3377862); translocation machinery component 1494500 588858001795 STM14_1694 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S translocation machinery component YP_005237268.1 1493910 D 588858 CDS YP_005237269.1 378449910 1494497..1494970 1 NC_016856.1 putative secretion chaperone (gi|3377863); secretion system chaperone 1494970 sscA 588858001796 sscA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secretion system chaperone YP_005237269.1 1494497 D 588858 CDS YP_005237270.1 378449911 1494973..1496427 1 NC_016856.1 SseC (gi|3377864); translocation machinery component 1496427 sseC 588858001797 sseC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S translocation machinery component YP_005237270.1 1494973 D 588858 CDS YP_005237271.1 378449912 1496443..1497030 1 NC_016856.1 SseD (gi|3776122); translocation machinery component 1497030 sseD 588858001798 sseD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S translocation machinery component YP_005237271.1 1496443 D 588858 CDS YP_005237272.1 378449913 1497033..1497449 1 NC_016856.1 SseE (gi|3377866); secreted effector protein 1497449 sseE 588858001799 sseE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secreted effector protein YP_005237272.1 1497033 D 588858 CDS YP_005237273.1 378449914 1497501..1497935 1 NC_016856.1 SscB (gi|3377867); secretion system chaperone 1497935 sscB 588858001800 sscB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secretion system chaperone YP_005237273.1 1497501 D 588858 CDS YP_005237274.1 378449915 1497951..1498733 1 NC_016856.1 SseF (gi|3377868); secreted effector protein 1498733 sseF 588858001801 sseF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secreted effector protein YP_005237274.1 1497951 D 588858 CDS YP_005237275.1 378449916 1498730..1499419 1 NC_016856.1 SseG (gi|3377858); secreted effector protein 1499419 sseG 588858001802 sseG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secreted effector protein YP_005237275.1 1498730 D 588858 CDS YP_005237276.1 378449917 1499513..1499728 1 NC_016856.1 SsaH (gi|2460267); type III secretion system apparatus protein 1499728 ssaG 588858001803 ssaG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S type III secretion system apparatus protein YP_005237276.1 1499513 D 588858 CDS YP_005237277.1 378449918 1499769..1499996 1 NC_016856.1 SsaH (gi|3776128); type III secretion system apparatus protein 1499996 ssaH 588858001804 ssaH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S type III secretion system apparatus protein YP_005237277.1 1499769 D 588858 CDS YP_005237278.1 378449919 1500008..1500256 1 NC_016856.1 SsaI (gi|3776129); type III secretion system apparatus protein 1500256 ssaI 588858001805 ssaI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S type III secretion system apparatus protein YP_005237278.1 1500008 D 588858 CDS YP_005237279.1 378449920 1500253..1501002 1 NC_016856.1 similar to yscJ/mxiJ/prgK family of lipoproteins; secretion system apparatus lipoprotein SsaJ precursor (SW:SSAJ_SALTY); needle complex inner membrane lipoprotein 1501002 ssaJ 588858001806 ssaJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S needle complex inner membrane lipoprotein YP_005237279.1 1500253 D 588858 CDS YP_005237280.1 378449921 1501020..1501568 1 NC_016856.1 putative cytoplasmic protein 1501568 588858001807 STM14_1706 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237280.1 1501020 D 588858 CDS YP_005237281.1 378449922 1501565..1502239 1 NC_016856.1 secretion system apparatus protein SsaK (SW:SSAK_SALTY); type III secretion system apparatus protein 1502239 ssaK 588858001808 ssaK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S type III secretion system apparatus protein YP_005237281.1 1501565 D 588858 CDS YP_005237282.1 378449923 1502205..1503221 1 NC_016856.1 secretion system apparatus protein SsaL (SW:SSAL_SALTY); type III secretion system apparatus protein 1503221 ssaL 588858001809 ssaL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S type III secretion system apparatus protein YP_005237282.1 1502205 D 588858 CDS YP_005237283.1 378449924 1503279..1503647 1 NC_016856.1 secretion system apparatus protein SsaM (SW:SSAM_SALTY); type III secretion system apparatus protein 1503647 ssaM 588858001810 ssaM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S type III secretion system apparatus protein YP_005237283.1 1503279 D 588858 CDS YP_005237284.1 378449925 1503632..1505677 1 NC_016856.1 with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system; secretion system apparatus protein SsaV 1505677 ssaV 588858001811 ssaV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secretion system apparatus protein SsaV YP_005237284.1 1503632 D 588858 CDS YP_005237285.1 378449926 1505667..1506968 1 NC_016856.1 similar to YscN family of proteins; probable secretion system apparatus ATP synthase SsaN (SW:SSAN_SALTY); type III secretion system ATPase 1506968 ssaN 588858001812 ssaN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S type III secretion system ATPase YP_005237285.1 1505667 D 588858 CDS YP_005237286.1 378449927 1506971..1507348 1 NC_016856.1 secretion system apparatus protein SsaO (SW:SSAO_SALTY); type III secretion system apparatus protein 1507348 ssaO 588858001813 ssaO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S type III secretion system apparatus protein YP_005237286.1 1506971 D 588858 CDS YP_005237287.1 378449928 1507329..1507703 1 NC_016856.1 secretion system apparatus protein SsaP (SW:SSAP_SALTY); type III secretion system apparatus protein 1507703 ssaP 588858001814 ssaP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S type III secretion system apparatus protein YP_005237287.1 1507329 D 588858 CDS YP_005237288.1 378449929 1507684..1508652 1 NC_016856.1 secretion system apparatus protein SsaQ (SW:SSAQ_SALTY); type III secretion system apparatus protein; type III secretion system protein 1508652 ssaQ 588858001815 ssaQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S type III secretion system protein YP_005237288.1 1507684 D 588858 CDS YP_005237289.1 378449930 1508720..1509367 1 NC_016856.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 1509367 ssaR 588858001816 ssaR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S type III secretion system protein YP_005237289.1 1508720 D 588858 CDS YP_005237290.1 378449931 1509364..1509630 1 NC_016856.1 secretion system apparatus protein SsaS (SW:SSAS_SALTY); similar to YscS of the secretion system of Yersinia; type III secretion system apparatus protein 1509630 ssaS 588858001817 ssaS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S type III secretion system apparatus protein YP_005237290.1 1509364 D 588858 CDS YP_005237291.1 378449932 1509631..1510410 1 NC_016856.1 secretion system apparatus protein SsaT (SW:SSAT_SALTY); similar to YscT of the secretion system of Yersinia; type III secretion system apparatus protein 1510410 ssaT 588858001818 ssaT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S type III secretion system apparatus protein YP_005237291.1 1509631 D 588858 CDS YP_005237292.1 378449933 1510407..1511465 1 NC_016856.1 member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli; secretion system apparatus protein SsaU 1511465 ssaU 588858001819 ssaU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secretion system apparatus protein SsaU YP_005237292.1 1510407 D 588858 CDS YP_005237293.1 378449934 1511477..1511602 1 NC_016856.1 hypothetical protein 1511602 588858001820 STM14_1719 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237293.1 1511477 D 588858 CDS YP_005237294.1 378449935 complement(1511938..1513311) 1 NC_016856.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein 1513311 ydhE 588858001823 ydhE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multidrug efflux protein YP_005237294.1 1511938 R 588858 CDS YP_005237295.1 378449936 1513528..1514169 1 NC_016856.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1514169 ribE 588858001824 ribE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S riboflavin synthase subunit alpha YP_005237295.1 1513528 D 588858 CDS YP_005237296.1 378449937 complement(1514211..1515359) 1 NC_016856.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase 1515359 cfa 588858001825 cfa Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cyclopropane-fatty-acyl-phospholipid synthase YP_005237296.1 1514211 R 588858 CDS YP_005237297.1 378449938 complement(1515649..1516854) 1 NC_016856.1 uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 1516854 ydhC 588858001826 ydhC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S inner membrane transport protein YdhC YP_005237297.1 1515649 R 588858 CDS YP_005237298.1 378449939 1516967..1517899 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74731.1); LysR family; putative DNA-binding transcriptional regulator 1517899 ydhB 588858001827 ydhB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA-binding transcriptional regulator YP_005237298.1 1516967 D 588858 CDS YP_005237299.1 378449940 complement(1517896..1518921) 1 NC_016856.1 binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; DNA-binding transcriptional repressor PurR 1518921 purR 588858001828 purR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional repressor PurR YP_005237299.1 1517896 R 588858 CDS YP_005237300.1 378449941 1519171..1519452 1 NC_016856.1 hypothetical protein 1519452 588858001829 STM14_1728 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237300.1 1519171 D 588858 CDS YP_005237301.1 378449942 complement(1519389..1519970) 1 NC_016856.1 SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; superoxide dismutase 1519970 sodB 588858001830 sodB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S superoxide dismutase YP_005237301.1 1519389 R 588858 CDS YP_005237302.1 378449943 complement(1520097..1520951) 1 NC_016856.1 similar to Escherichia coli putative lipoprotein (AAC74727.1); putative cell wall-associated hydrolase 1520951 ydhO 588858001831 ydhO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cell wall-associated hydrolase YP_005237302.1 1520097 R 588858 CDS YP_005237303.1 378449944 1521253..1521600 1 NC_016856.1 hypothetical protein 1521600 ydhD 588858001832 ydhD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237303.1 1521253 D 588858 CDS YP_005237304.1 378449945 complement(1521678..1522325) 1 NC_016856.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1522325 rnt 588858001833 rnt Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonuclease T YP_005237304.1 1521678 R 588858 CDS YP_005237305.1 378449946 complement(1522426..1522833) 1 NC_016856.1 Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; glyoxalase I 1522833 gloA 588858001834 gloA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glyoxalase I YP_005237305.1 1522426 R 588858 CDS YP_005237306.1 378449947 complement(1522902..1523999) 1 NC_016856.1 FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase 1523999 nemA 588858001835 nemA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N-ethylmaleimide reductase YP_005237306.1 1522902 R 588858 CDS YP_005237307.1 378449948 complement(1524058..1524657) 1 NC_016856.1 TetR/AcrR family; putative transcriptional repressor 1524657 ydhM 588858001836 ydhM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional repressor YP_005237307.1 1524058 R 588858 CDS YP_005237308.1 378449949 1524760..1524999 1 NC_016856.1 putative oxidoreductase 1524999 ydhL 588858001837 ydhL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative oxidoreductase YP_005237308.1 1524760 D 588858 CDS YP_005237309.1 378449950 1525050..1525946 1 NC_016856.1 putative aldo/keto reductase 1525946 ydhF 588858001838 ydhF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative aldo/keto reductase YP_005237309.1 1525050 D 588858 CDS YP_005237310.1 378449951 1526026..1526547 1 NC_016856.1 SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; superoxide dismutase 1526547 sodC_2 588858001839 sodC_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S superoxide dismutase YP_005237310.1 1526026 D 588858 CDS YP_005237311.1 378449952 complement(1526523..1528562) 1 NC_016856.1 putative inner membrane protein 1528562 588858001840 STM14_1739 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237311.1 1526523 R 588858 CDS YP_005237312.1 378449953 complement(1528562..1529458) 1 NC_016856.1 similar to Escherichia coli putative membrane protein (AAC74716.1); putative multidrug resistance efflux pump 1529458 ydhJ 588858001841 ydhJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative multidrug resistance efflux pump YP_005237312.1 1528562 R 588858 CDS YP_005237313.1 378449954 complement(1529425..1529661) 1 NC_016856.1 putative inner membrane protein 1529661 ydhI 588858001842 ydhI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237313.1 1529425 R 588858 CDS YP_005237314.1 378449955 1529862..1530296 1 NC_016856.1 Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 1530296 slyA 588858001843 slyA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator SlyA YP_005237314.1 1529862 D 588858 CDS YP_005237315.1 378449956 complement(1530344..1530811) 1 NC_016856.1 outer membrane lipoprotein SlyB precursor (SW:SLYB_SALTY); putative outer membrane lipoprotein 1530811 slyB 588858001844 slyB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005237315.1 1530344 R 588858 CDS YP_005237316.1 378449957 1531083..1532204 1 NC_016856.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 1532204 anmK 588858001845 anmK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S anhydro-N-acetylmuramic acid kinase YP_005237316.1 1531083 D 588858 CDS YP_005237317.1 378449958 1532292..1532621 1 NC_016856.1 MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1532621 mliC 588858001846 mliC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lysozyme inhibitor YP_005237317.1 1532292 D 588858 CDS YP_005237318.1 378449959 1532680..1533336 1 NC_016856.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1533336 pdxH 588858001847 pdxH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyridoxamine 5'-phosphate oxidase YP_005237318.1 1532680 D 588858 CDS YP_005237319.1 378449960 1533463..1534737 1 NC_016856.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1534737 tyrS 588858001848 tyrS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tyrosyl-tRNA synthetase YP_005237319.1 1533463 D 588858 CDS YP_005237320.1 378449961 1534797..1535657 1 NC_016856.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1535657 pdxY 588858001849 pdxY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyridoxamine kinase YP_005237320.1 1534797 D 588858 CDS YP_005237321.1 378449962 complement(1535716..1536321) 1 NC_016856.1 similar to Escherichia coli glutathionine S-transferase (AAC74707.1); glutathionine S-transferase 1536321 gst 588858001850 gst Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutathionine S-transferase YP_005237321.1 1535716 R 588858 CDS YP_005237322.1 378449963 complement(1536426..1537931) 1 NC_016856.1 mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; putative tripeptide transporter permease 1537931 tppB 588858001851 tppB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative tripeptide transporter permease YP_005237322.1 1536426 R 588858 CDS YP_005237323.1 378449964 1538110..1538277 1 NC_016856.1 hypothetical protein 1538277 588858001852 STM14_1751 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237323.1 1538110 D 588858 CDS YP_005237324.1 378449965 complement(1538533..1539168) 1 NC_016856.1 DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines; endonuclease III 1539168 nth 588858001853 nth Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S endonuclease III YP_005237324.1 1538533 R 588858 CDS YP_005237325.1 378449966 complement(1539168..1539860) 1 NC_016856.1 With RsxABCDG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; SoxR-reducing system protein RsxE 1539860 ydgQ 588858001854 ydgQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S SoxR-reducing system protein RsxE YP_005237325.1 1539168 R 588858 CDS YP_005237326.1 378449967 complement(1539863..1540483) 1 NC_016856.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 1540483 ydgP 588858001855 ydgP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S electron transport complex protein RnfG YP_005237326.1 1539863 R 588858 CDS YP_005237327.1 378449968 complement(1540487..1541545) 1 NC_016856.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 1541545 rnfD 588858001856 rnfD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S electron transport complex protein RnfD YP_005237327.1 1540487 R 588858 CDS YP_005237328.1 378449969 complement(1541546..1543753) 1 NC_016856.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 1543753 588858001857 STM14_1756 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S electron transport complex protein RnfC YP_005237328.1 1541546 R 588858 CDS YP_005237329.1 378449970 complement(1543746..1544324) 1 NC_016856.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 1544324 ydgM 588858001858 ydgM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S electron transport complex protein RnfB YP_005237329.1 1543746 R 588858 CDS YP_005237330.1 378449971 complement(1544324..1544905) 1 NC_016856.1 inner membrane protein; Na(+)-translocating NADH-quinone reductase subunit E 1544905 588858001859 STM14_1758 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Na(+)-translocating NADH-quinone reductase subunit E YP_005237330.1 1544324 R 588858 CDS YP_005237331.1 378449972 complement(1544982..1545422) 1 NC_016856.1 putative inner membrane protein 1545422 ydgK 588858001860 ydgK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237331.1 1544982 R 588858 CDS YP_005237332.1 378449973 complement(1545511..1545741) 1 NC_016856.1 YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes; oriC-binding nucleoid-associated protein 1545741 ydgT 588858001861 ydgT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S oriC-binding nucleoid-associated protein YP_005237332.1 1545511 R 588858 CDS YP_005237333.2 410023179 complement(1546024..1546179) 1 NC_016856.1 hypothetical protein 1546179 588858001862 STM14_1761 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237333.2 1546024 R 588858 CDS YP_005237334.1 378449975 1546357..1547397 1 NC_016856.1 putative oxidoreductase 1547397 ydgJ 588858001863 ydgJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative oxidoreductase YP_005237334.1 1546357 D 588858 CDS YP_005237335.1 378449976 complement(1547472..1548473) 1 NC_016856.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 1548473 add 588858001864 add Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S adenosine deaminase YP_005237335.1 1547472 R 588858 CDS YP_005237336.1 378449977 1548438..1548683 1 NC_016856.1 hypothetical protein 1548683 588858001865 STM14_1764 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237336.1 1548438 D 588858 CDS YP_005237337.1 378449978 complement(1549052..1549171) 1 NC_016856.1 hypothetical protein 1549171 588858001868 STM14_1767 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237337.1 1549052 R 588858 CDS YP_005237338.1 378449979 complement(1549177..1550685) 1 NC_016856.1 hypothetical protein 1550685 ydgA 588858001869 ydgA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237338.1 1549177 R 588858 CDS YP_005237339.1 378449980 complement(1550788..1551963) 1 NC_016856.1 mannose-6-phosphate isomerase (SW:MANA_SALTY); mannose-6-phosphate isomerase 1551963 manA 588858001870 manA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S mannose-6-phosphate isomerase YP_005237339.1 1550788 R 588858 CDS YP_005237340.1 378449981 1552163..1553809 1 NC_016856.1 fumarate hydratase class I aerobic isozyme (SW:FUMA_SALTY); fumarase A 1553809 fumA 588858001871 fumA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fumarase A YP_005237340.1 1552163 D 588858 CDS YP_005237341.1 378449982 1553745..1553906 1 NC_016856.1 fumarase A 1553906 588858001872 STM14_1771 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fumarase A YP_005237341.1 1553745 D 588858 CDS YP_005237342.1 378449983 1553977..1555380 1 NC_016856.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1555380 fumC 588858001873 fumC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fumarate hydratase YP_005237342.1 1553977 D 588858 CDS YP_005237343.1 378449984 complement(1555377..1556306) 1 NC_016856.1 binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein 1556306 tus 588858001874 tus Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA replication terminus site-binding protein YP_005237343.1 1555377 R 588858 CDS YP_005237344.1 378449985 complement(1556382..1557683) 1 NC_016856.1 similar to Escherichia coli sensor histidine protein kinase (RstA regulator) (AAC74681.1); in two-component regulatory system with RstA; sensor protein RstB 1557683 rstB 588858001875 rstB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sensor protein RstB YP_005237344.1 1556382 R 588858 CDS YP_005237345.1 378449986 complement(1557794..1559500) 1 NC_016856.1 hypothetical protein 1559500 588858001876 STM14_1775 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237345.1 1557794 R 588858 CDS YP_005237346.1 378449987 complement(1559385..1559690) 1 NC_016856.1 outer membrane protein 1559690 588858001877 STM14_1776 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane protein YP_005237346.1 1559385 R 588858 CDS YP_005237347.1 378449988 complement(1559653..1560786) 1 NC_016856.1 similar to Escherichia coli putative outer membrane protein (AAC74459.1); non-specific porin; outer membrane protein N 1560786 ompN 588858001878 ompN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane protein N YP_005237347.1 1559653 R 588858 CDS YP_005237348.1 378449989 complement(1561266..1561997) 1 NC_016856.1 response regulator in two-component regulatory system with RstB; DNA-binding transcriptional regulator RstA 1561997 rstA 588858001880 rstA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator RstA YP_005237348.1 1561266 R 588858 CDS YP_005237349.1 378449990 1562124..1562459 1 NC_016856.1 putative inner membrane protein 1562459 ydgC 588858001881 ydgC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237349.1 1562124 D 588858 CDS YP_005237350.1 378449991 complement(1562521..1563903) 1 NC_016856.1 similar to Escherichia coli putative arginine/ornithine antiporter (AAC74677.1); putative amino acid transporter 1563903 ydgI 588858001882 ydgI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative amino acid transporter YP_005237350.1 1562521 R 588858 CDS YP_005237351.1 378449992 complement(1563882..1564016) 1 NC_016856.1 putative amino acid permease 1564016 588858001883 STM14_1782 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative amino acid permease YP_005237351.1 1563882 R 588858 CDS YP_005237352.1 378449993 complement(1563914..1564087) 1 NC_016856.1 hypothetical protein 1564087 588858001884 STM14_1783 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237352.1 1563914 R 588858 CDS YP_005237353.1 378449994 1564099..1564224 1 NC_016856.1 hypothetical protein 1564224 588858001885 STM14_1784 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237353.1 1564099 D 588858 CDS YP_005237354.1 378449995 complement(1564202..1565146) 1 NC_016856.1 hypothetical protein 1565146 ydgH 588858001886 ydgH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237354.1 1564202 R 588858 CDS YP_005237355.1 378449996 1565234..1565359 1 NC_016856.1 hypothetical protein 1565359 588858001887 STM14_1786 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237355.1 1565234 D 588858 CDS YP_005237356.1 378449997 1565673..1567202 1 NC_016856.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 1567202 pntA 588858001888 pntA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NAD(P) transhydrogenase subunit alpha YP_005237356.1 1565673 D 588858 CDS YP_005237357.1 378449998 1567213..1568601 1 NC_016856.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 1568601 pntB 588858001889 pntB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyridine nucleotide transhydrogenase YP_005237357.1 1567213 D 588858 CDS YP_005237358.1 378449999 complement(1568776..1569810) 1 NC_016856.1 transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; putative transport protein 1569810 tqsA 588858001890 tqsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005237358.1 1568776 R 588858 CDS YP_005237359.1 378450000 1569946..1570116 1 NC_016856.1 hypothetical protein 1570116 588858001891 STM14_1790 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237359.1 1569946 D 588858 CDS YP_005237360.1 378450001 1570228..1570590 1 NC_016856.1 with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtJ 1570590 ydgF 588858001892 ydgF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multidrug efflux system protein MdtJ YP_005237360.1 1570228 D 588858 CDS YP_005237361.1 378450002 1570577..1570906 1 NC_016856.1 with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtI 1570906 ydgE 588858001893 ydgE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multidrug efflux system protein MdtI YP_005237361.1 1570577 D 588858 CDS YP_005237362.1 378450003 complement(1570946..1571767) 1 NC_016856.1 putative protease 1571767 588858001894 STM14_1793 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative protease YP_005237362.1 1570946 R 588858 CDS YP_005237363.1 378450004 complement(1571734..1572027) 1 NC_016856.1 hypothetical protein 1572027 588858001895 STM14_1794 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237363.1 1571734 R 588858 CDS YP_005237364.1 378450005 complement(1572036..1572284) 1 NC_016856.1 required for growth and survival under moderately acid conditions; acid shock protein 1572284 588858001896 STM14_1795 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acid shock protein YP_005237364.1 1572036 R 588858 CDS YP_005237365.1 378450006 complement(1572462..1572653) 1 NC_016856.1 hypothetical protein 1572653 588858001897 STM14_1796 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237365.1 1572462 R 588858 CDS YP_005237366.1 378450007 complement(1572679..1573932) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC74668.1); MFS family; putative transport protein 1573932 ynfM 588858001898 ynfM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005237366.1 1572679 R 588858 CDS YP_005237367.1 378450008 1574052..1574951 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74667.1); LysR family; putative transcriptional regulator 1574951 ynfL 588858001899 ynfL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005237367.1 1574052 D 588858 CDS YP_005237368.1 378450009 1575079..1576299 1 NC_016856.1 similar to Escherichia coli putative NagC-like transcriptional regulator (AAC74666.1); repressor of ptsG and ptsHI; global repressor of carbohydrate metabolism pts operon; NagC/XylR family; pts operon transcriptional repressor 1576299 mlc 588858001900 mlc Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pts operon transcriptional repressor YP_005237368.1 1575079 D 588858 CDS YP_005237369.1 378450010 1576425..1577120 1 NC_016856.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; putative dithiobiotin synthetase 1577120 bioD_2 588858001901 bioD_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dithiobiotin synthetase YP_005237369.1 1576425 D 588858 CDS YP_005237370.1 378450011 complement(1577076..1578329) 1 NC_016856.1 similar to Escherichia coli putative chloride channel (AAC74664.1); putative voltage-gated ClC-type chloride channel ClcB 1578329 588858001902 STM14_1801 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative voltage-gated ClC-type chloride channel ClcB YP_005237370.1 1577076 R 588858 CDS YP_005237371.1 378450012 complement(1578501..1579649) 1 NC_016856.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC75190.1); ABC-type ATPase component; proline/glycine betaine transport system 1579649 588858001903 STM14_1802 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S proline/glycine betaine transport system YP_005237371.1 1578501 R 588858 CDS YP_005237372.1 378450013 complement(1579649..1580296) 1 NC_016856.1 similar to Escherichia coli putative transport system permease protein (AAC75189.1); binding-protein-dependent; putative ABC transporter permease 1580296 588858001904 STM14_1803 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter permease YP_005237372.1 1579649 R 588858 CDS YP_005237373.1 378450014 complement(1580306..1581208) 1 NC_016856.1 similar to Escherichia coli putative transport system permease protein (AAC75192.1); putative ABC transporter periplasmic component 1581208 588858001905 STM14_1804 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter periplasmic component YP_005237373.1 1580306 R 588858 CDS YP_005237374.1 378450015 complement(1581237..1581947) 1 NC_016856.1 similar to Escherichia coli putative transport system permease protein (AAC75189.1); ABC-type transport systems; putative transport system permease component 1581947 588858001906 STM14_1805 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport system permease component YP_005237374.1 1581237 R 588858 CDS YP_005237375.1 378450016 complement(1582252..1582866) 1 NC_016856.1 binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane; twin-argninine leader-binding protein DmsD 1582866 ynfI 588858001907 ynfI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S twin-argninine leader-binding protein DmsD YP_005237375.1 1582252 R 588858 CDS YP_005237376.1 378450017 complement(1582909..1583766) 1 NC_016856.1 similar to Escherichia coli putative DMSO reductase anchor subunit (AAC74662.1); putative dimethylsulfoxide reductase 1583766 588858001908 STM14_1807 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dimethylsulfoxide reductase YP_005237376.1 1582909 R 588858 CDS YP_005237377.1 378450018 complement(1583768..1584385) 1 NC_016856.1 similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); putative dimethyl sulfoxide reductase 1584385 588858001909 STM14_1808 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dimethyl sulfoxide reductase YP_005237377.1 1583768 R 588858 CDS YP_005237378.1 378450019 complement(1584396..1586831) 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase; major subunit (AAC74660.1); putative dimethyl sulfoxide reductase 1586831 588858001910 STM14_1809 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dimethyl sulfoxide reductase YP_005237378.1 1584396 R 588858 CDS YP_005237379.1 378450020 complement(1586812..1587033) 1 NC_016856.1 putative dimethyl sulfoxide reductase subunit A 1587033 588858001911 STM14_1810 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dimethyl sulfoxide reductase subunit A YP_005237379.1 1586812 R 588858 CDS YP_005237380.1 378450021 complement(1586930..1589371) 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase; major subunit (AAC74659.1); putative dimethyl sulfoxide reductase chain A1 1589371 588858001912 STM14_1811 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dimethyl sulfoxide reductase chain A1 YP_005237380.1 1586930 R 588858 CDS YP_005237381.1 378450022 complement(1589525..1589833) 1 NC_016856.1 putative outer membrane protein 1589833 ynfD 588858001913 ynfD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005237381.1 1589525 R 588858 CDS YP_005237382.1 378450023 1589937..1590647 1 NC_016856.1 hypothetical protein 1590647 ynfC 588858001914 ynfC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237382.1 1589937 D 588858 CDS YP_005237383.1 378450024 complement(1590688..1591248) 1 NC_016856.1 similar to Escherichia coli spermidine N1-acetyltransferase (AAC74656.1); spermidine N1-acetyltransferase 1591248 speG 588858001915 speG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S spermidine N1-acetyltransferase YP_005237383.1 1590688 R 588858 CDS YP_005237384.1 378450025 complement(1591284..1591625) 1 NC_016856.1 hypothetical protein 1591625 ynfB 588858001916 ynfB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237384.1 1591284 R 588858 CDS YP_005237385.1 378450026 complement(1591641..1591757) 1 NC_016856.1 hypothetical protein 1591757 588858001917 STM14_1816 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237385.1 1591641 R 588858 CDS YP_005237386.1 378450027 1591778..1592104 1 NC_016856.1 hypothetical protein 1592104 ynfA 588858001918 ynfA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237386.1 1591778 D 588858 CDS YP_005237387.1 378450028 1592226..1593440 1 NC_016856.1 similar to Escherichia coli starvation-sensing protein (AAC74653.1); putative dehydratase 1593440 rspA 588858001919 rspA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dehydratase YP_005237387.1 1592226 D 588858 CDS YP_005237388.1 378450029 1593451..1594470 1 NC_016856.1 similar to Escherichia coli starvation-sensing protein (AAC74652.1); putative dehydrogenase 1594470 rspB 588858001920 rspB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dehydrogenase YP_005237388.1 1593451 D 588858 CDS YP_005237389.1 378450030 1595845..1596036 1 NC_016856.1 putative membrane transport protein 1596036 588858001922 STM14_1821 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative membrane transport protein YP_005237389.1 1595845 D 588858 CDS YP_005237390.1 378450031 1596047..1597513 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC74615.1); putative mannitol dehydrogenase 1597513 ydfI 588858001923 ydfI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative mannitol dehydrogenase YP_005237390.1 1596047 D 588858 CDS YP_005237391.1 378450032 complement(1597580..1597783) 1 NC_016856.1 putative cytoplasmic protein 1597783 ydfZ 588858001924 ydfZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237391.1 1597580 R 588858 CDS YP_005237392.1 378450033 complement(1597964..1598650) 1 NC_016856.1 GntR family; putative regulatory protein 1598650 ydfH 588858001925 ydfH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005237392.1 1597964 R 588858 CDS YP_005237393.1 378450034 complement(1598780..1599541) 1 NC_016856.1 NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine; 3-hydroxy acid dehydrogenase 1599541 ydfG 588858001926 ydfG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-hydroxy acid dehydrogenase YP_005237393.1 1598780 R 588858 CDS YP_005237394.1 378450035 1599665..1601707 1 NC_016856.1 peptidyl-dipeptidase DCP (SW:DCP_SALTY); dipeptidyl carboxypeptidase II 1601707 dcp 588858001927 dcp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dipeptidyl carboxypeptidase II YP_005237394.1 1599665 D 588858 CDS YP_005237395.1 378450036 complement(1601704..1601919) 1 NC_016856.1 hypothetical protein 1601919 588858001928 STM14_1827 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237395.1 1601704 R 588858 CDS YP_005237396.1 378450037 1601786..1601923 1 NC_016856.1 peptidyl-dipeptidase dcp 1601923 588858001929 STM14_1828 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptidyl-dipeptidase dcp YP_005237396.1 1601786 D 588858 CDS YP_005237397.1 378450038 1602052..1602234 1 NC_016856.1 putative cytoplasmic protein 1602234 588858001930 STM14_1829 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237397.1 1602052 D 588858 CDS YP_005237398.1 378450039 complement(1602354..1602881) 1 NC_016856.1 competence damage-inducible protein A 1602881 ydeJ 588858001931 ydeJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S competence damage-inducible protein A YP_005237398.1 1602354 R 588858 CDS YP_005237399.1 378450040 complement(1602970..1603068) 1 NC_016856.1 hypothetical protein 1603068 588858001932 STM14_1831 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237399.1 1602970 R 588858 CDS YP_005237400.1 378450041 1603308..1603700 1 NC_016856.1 hypothetical protein 1603700 ydeI 588858001933 ydeI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237400.1 1603308 D 588858 CDS YP_005237401.1 378450042 complement(1603865..1604014) 1 NC_016856.1 hypothetical protein 1604014 588858001934 STM14_1833 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237401.1 1603865 R 588858 CDS YP_005237402.1 378450043 complement(1604391..1605578) 1 NC_016856.1 YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters; putative MFS-type transporter YdeE 1605578 ydeE 588858001935 ydeE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative MFS-type transporter YdeE YP_005237402.1 1604391 R 588858 CDS YP_005237403.1 378450044 1605806..1606708 1 NC_016856.1 probable cysteine metabolite efflux pump (SW:EAMA_SALTY); integral membrane protein; O-acetylserine/cysteine export protein 1606708 ydeD 588858001936 ydeD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S O-acetylserine/cysteine export protein YP_005237403.1 1605806 D 588858 CDS YP_005237404.1 378450045 complement(1606827..1607042) 1 NC_016856.1 multiple antibiotic resistance protein MarB (SW:MARB_SALTY); hypothetical protein 1607042 marB 588858001937 marB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237404.1 1606827 R 588858 CDS YP_005237405.1 378450046 complement(1607071..1607454) 1 NC_016856.1 transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF; DNA-binding transcriptional activator MarA 1607454 marA 588858001938 marA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional activator MarA YP_005237405.1 1607071 R 588858 CDS YP_005237406.1 378450047 complement(1607474..1607908) 1 NC_016856.1 Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes; DNA-binding transcriptional repressor MarR 1607908 marR 588858001939 marR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional repressor MarR YP_005237406.1 1607474 R 588858 CDS YP_005237407.1 378450048 1608167..1608832 1 NC_016856.1 protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function; multiple drug resistance protein MarC 1608832 marC 588858001940 marC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multiple drug resistance protein MarC YP_005237407.1 1608167 D 588858 CDS YP_005237408.1 378450049 complement(1608879..1610069) 1 NC_016856.1 similar to Escherichia coli putative resistance/regulatory protein (AAC74601.1); contributes to control of arabinose regulon; MFS family; sugar efflux transporter 1610069 ydeA 588858001941 ydeA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sugar efflux transporter YP_005237408.1 1608879 R 588858 CDS YP_005237409.1 378450050 complement(1610185..1611057) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74599.1); LysR family; putative transcriptional regulator 1611057 yneJ 588858001942 yneJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005237409.1 1610185 R 588858 CDS YP_005237410.1 378450051 1611160..1612548 1 NC_016856.1 similar to Escherichia coli putative aldehyde dehydrogenase (AAC74598.1); putative succinate-semialdehyde dehydrogenase 1612548 yneI 588858001943 yneI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative succinate-semialdehyde dehydrogenase YP_005237410.1 1611160 D 588858 CDS YP_005237411.1 378450052 1612621..1613547 1 NC_016856.1 catalyzes the formation of glutamate from glutamine; glutaminase 1613547 yneH 588858001944 yneH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutaminase YP_005237411.1 1612621 D 588858 CDS YP_005237412.1 378450053 1613547..1613906 1 NC_016856.1 putative cytoplasmic protein 1613906 yneG 588858001945 yneG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237412.1 1613547 D 588858 CDS YP_005237413.1 378450054 1614130..1615077 1 NC_016856.1 putative inner membrane protein 1615077 588858001946 STM14_1845 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237413.1 1614130 D 588858 CDS YP_005237414.1 378450055 complement(1615133..1615675) 1 NC_016856.1 putative outer membrane protein 1615675 588858001947 STM14_1846 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005237414.1 1615133 R 588858 CDS YP_005237415.1 378450056 1615524..1615850 1 NC_016856.1 putative inner membrane protein 1615850 588858001948 STM14_1847 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237415.1 1615524 D 588858 CDS YP_005237416.1 378450057 1616392..1617510 1 NC_016856.1 similar to Escherichia coli putative outer membrane protein (AAC74459.1); putative outer membrane protein 1617510 588858001949 STM14_1848 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005237416.1 1616392 D 588858 CDS YP_005237417.1 378450058 complement(1617651..1617992) 1 NC_016856.1 similar to Escherichia coli may modulate levels of hydrogenease-2 (AAC76027.1); putative hydrogenase 1617992 588858001950 STM14_1849 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrogenase YP_005237417.1 1617651 R 588858 CDS YP_005237418.1 378450059 complement(1618005..1618892) 1 NC_016856.1 dehydrogenase 1618892 588858001951 STM14_1850 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dehydrogenase YP_005237418.1 1618005 R 588858 CDS YP_005237419.1 378450060 complement(1618880..1619941) 1 NC_016856.1 similar to Escherichia coli nickel incorporation into hydrogenase-1 proteins (AAC74062.1); putative hydrogenase 1619941 588858001952 STM14_1851 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrogenase YP_005237419.1 1618880 R 588858 CDS YP_005237420.1 378450061 complement(1619959..1620369) 1 NC_016856.1 similar to Escherichia coli processing of HyaA and HyaB proteins (AAC74061.1); putative hydrogenase 1620369 588858001953 STM14_1852 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrogenase YP_005237420.1 1619959 R 588858 CDS YP_005237421.1 378450062 complement(1620366..1620665) 1 NC_016856.1 putative hydrogenase protein 1620665 588858001954 STM14_1853 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrogenase protein YP_005237421.1 1620366 R 588858 CDS YP_005237422.1 378450063 complement(1620665..1621273) 1 NC_016856.1 similar to Escherichia coli processing of HyaA and HyaB proteins (AAC74060.1); putative hydrogenase maturation protease 1621273 588858001955 STM14_1854 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrogenase maturation protease YP_005237422.1 1620665 R 588858 CDS YP_005237423.1 378450064 complement(1621279..1622022) 1 NC_016856.1 similar to Escherichia coli probable Ni/Fe hydrogenase 1 b-type cytochrome subunit (AAC74059.1); putative Ni/Fe hydrogenase 1 b-type cytochrome subunit 1622022 588858001956 STM14_1855 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative Ni/Fe hydrogenase 1 b-type cytochrome subunit YP_005237423.1 1621279 R 588858 CDS YP_005237424.1 378450065 complement(1621973..1623775) 1 NC_016856.1 similar to Escherichia coli hydrogenase-1 large subunit (AAC74058.1); putative hydrogenase-1 large subunit 1623775 588858001957 STM14_1856 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrogenase-1 large subunit YP_005237424.1 1621973 R 588858 CDS YP_005237425.1 378450066 complement(1623778..1624881) 1 NC_016856.1 similar to Escherichia coli hydrogenase-1 small subunit (AAC74057.1); putative hydrogenase-1 small subunit 1624881 588858001958 STM14_1857 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrogenase-1 small subunit YP_005237425.1 1623778 R 588858 CDS YP_005237426.1 378450067 complement(1625009..1625161) 1 NC_016856.1 hypothetical protein 1625161 588858001959 STM14_1858 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237426.1 1625009 R 588858 CDS YP_005237427.1 378450068 1625310..1626401 1 NC_016856.1 putative hydrolase 1626401 588858001960 STM14_1859 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrolase YP_005237427.1 1625310 D 588858 CDS YP_005237428.2 410023180 1626567..1627238 1 NC_016856.1 similar to Escherichia coli regulator for uxu operon (AAC77280.1); GntR family; putative regulatory protein 1627238 588858001961 STM14_1860 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005237428.2 1626567 D 588858 CDS YP_005237429.1 378450070 complement(1627297..1628322) 1 NC_016856.1 similar to Escherichia coli starvation-sensing protein (AAC74652.1); putative zinc-binding dehydrogenase 1628322 588858001962 STM14_1861 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative zinc-binding dehydrogenase YP_005237429.1 1627297 R 588858 CDS YP_005237430.1 378450071 complement(1628297..1629583) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC76161.1); putative transport protein 1629583 588858001963 STM14_1862 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005237430.1 1628297 R 588858 CDS YP_005237431.2 410023181 complement(1629760..1631250) 1 NC_016856.1 PhoPQ-regulated protein 1631250 pqaA 588858001964 pqaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S PhoPQ-regulated protein YP_005237431.2 1629760 R 588858 CDS YP_005237432.1 378450073 complement(1631386..1632627) 1 NC_016856.1 similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC73932.1); putative multidrug efflux protein 1632627 588858001965 STM14_1864 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative multidrug efflux protein YP_005237432.1 1631386 R 588858 CDS YP_005237433.1 378450074 complement(1632617..1634125) 1 NC_016856.1 similar to Escherichia coli 3-(3-hydroxyphenyl)propionate hydroxylase (AAC73450.1); hypothetical protein 1634125 588858001966 STM14_1865 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237433.1 1632617 R 588858 CDS YP_005237434.1 378450075 1634170..1634658 1 NC_016856.1 marR-family; putative transcriptional regulator 1634658 588858001967 STM14_1866 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005237434.1 1634170 D 588858 CDS YP_005237435.1 378450076 complement(1634718..1634879) 1 NC_016856.1 hypothetical protein 1634879 588858001968 STM14_1867 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237435.1 1634718 R 588858 CDS YP_005237436.1 378450077 1634851..1635930 1 NC_016856.1 similar to Escherichia coli synthesis of queuine in tRNA; probably S-adenosylmethionine/tRNA ribosyltransferase-isomerase (AAC73508.1); putative S-adenosylmethionine/tRNA-ribosyltransferase-isomerase 1635930 588858001969 STM14_1868 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative S-adenosylmethionine/tRNA-ribosyltransferase-isomerase YP_005237436.1 1634851 D 588858 CDS YP_005237437.1 378450078 complement(1635982..1636371) 1 NC_016856.1 putative translation initiation inhibitor 1636371 588858001970 STM14_1869 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative translation initiation inhibitor YP_005237437.1 1635982 R 588858 CDS YP_005237438.1 378450079 complement(1636542..1636826) 1 NC_016856.1 putative cytoplasmic protein 1636826 588858001971 STM14_1870 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237438.1 1636542 R 588858 CDS YP_005237439.1 378450080 complement(1636816..1637064) 1 NC_016856.1 putative cytoplasmic protein 1637064 588858001972 STM14_1871 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237439.1 1636816 R 588858 CDS YP_005237440.1 378450081 1637216..1637431 1 NC_016856.1 putative phage-related secreted protein 1637431 588858001973 STM14_1872 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phage-related secreted protein YP_005237440.1 1637216 D 588858 CDS YP_005237441.1 378450082 1637421..1637753 1 NC_016856.1 hypothetical protein 1637753 588858001974 STM14_1873 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237441.1 1637421 D 588858 CDS YP_005237442.1 378450083 1637896..1638804 1 NC_016856.1 putative cytoplasmic protein 1638804 588858001975 STM14_1874 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237442.1 1637896 D 588858 CDS YP_005237443.1 378450084 complement(1639903..1640112) 1 NC_016856.1 hypothetical protein 1640112 588858001977 STM14_1876 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237443.1 1639903 R 588858 CDS YP_005237444.1 378450085 complement(1640382..1641848) 1 NC_016856.1 putative coiled-coil protein 1641848 588858001978 STM14_1877 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative coiled-coil protein YP_005237444.1 1640382 R 588858 CDS YP_005237445.1 378450086 1642107..1643114 1 NC_016856.1 similar to Escherichia coli repressor of galETK operon (AAC75876.1); putative transcriptional regulator 1643114 588858001979 STM14_1878 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005237445.1 1642107 D 588858 CDS YP_005237446.1 378450087 1643258..1644709 1 NC_016856.1 similar to Escherichia coli transport of dicarboxylates (AAC73722.1); putative Na+/H+ antiporter 1644709 588858001980 STM14_1879 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative Na+/H+ antiporter YP_005237446.1 1643258 D 588858 CDS YP_005237447.1 378450088 1644722..1645924 1 NC_016856.1 similar to Escherichia coli enzyme that may degrade or block biosynthesis of endogenous mal inducer; probably aminotrasferase (AAC74694.1); putative aminotransferase 1645924 588858001981 STM14_1880 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative aminotransferase YP_005237447.1 1644722 D 588858 CDS YP_005237448.1 378450089 complement(1646037..1648112) 1 NC_016856.1 similar to Escherichia coli part of glycogen operon; glycosyl hydrolase; debranching enzyme (AAC76456.1); putative glycosyl hydrolase 1648112 588858001982 STM14_1881 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycosyl hydrolase YP_005237448.1 1646037 R 588858 CDS YP_005237449.1 378450090 complement(1648169..1650697) 1 NC_016856.1 similar to Escherichia coli trehalase 6-P hydrolase (AAC77196.1); putative glycosyl hydrolase 1650697 588858001983 STM14_1882 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycosyl hydrolase YP_005237449.1 1648169 R 588858 CDS YP_005237450.1 378450091 complement(1650694..1652478) 1 NC_016856.1 similar to Escherichia coli 1,4-alpha-glucan branching enzyme (AAC76457.1); putative alpha amylase 1652478 588858001984 STM14_1883 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative alpha amylase YP_005237450.1 1650694 R 588858 CDS YP_005237451.1 378450092 complement(1652607..1653392) 1 NC_016856.1 outer membrane or secreted; putative lipoprotein 1653392 588858001985 STM14_1884 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative lipoprotein YP_005237451.1 1652607 R 588858 CDS YP_005237452.1 378450093 complement(1653535..1653864) 1 NC_016856.1 acid-resistance protein 1653864 hdeB 588858001986 hdeB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acid-resistance protein YP_005237452.1 1653535 R 588858 CDS YP_005237453.1 378450094 complement(1654214..1654645) 1 NC_016856.1 similar to Escherichia coli osmotically inducible protein (AAC74555.1); resistance protein; osmotically inducible; putative envelope protein 1654645 osmC 588858001987 osmC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative envelope protein YP_005237453.1 1654214 R 588858 CDS YP_005237454.1 378450095 1655158..1655373 1 NC_016856.1 biofilm-dependent modulation protein 1655373 yddX 588858001988 yddX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S biofilm-dependent modulation protein YP_005237454.1 1655158 D 588858 CDS YP_005237455.1 378450096 1655468..1655611 1 NC_016856.1 protein D; stationary-phase-induced ribosome-associated; in Escherichia coli this protein becomes associated with the ribosome; expression increases during stationary phase; 30S ribosomal subunit S22 1655611 rpsV 588858001989 rpsV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal subunit S22 YP_005237455.1 1655468 D 588858 CDS YP_005237456.1 378450097 1655788..1657485 1 NC_016856.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1657485 sfcA 588858001990 sfcA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S malate dehydrogenase YP_005237456.1 1655788 D 588858 CDS YP_005237457.1 378450098 1657503..1657634 1 NC_016856.1 hypothetical protein 1657634 588858001991 STM14_1890 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237457.1 1657503 D 588858 CDS YP_005237458.1 378450099 1657771..1658781 1 NC_016856.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 1658781 adhP 588858001992 adhP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S alcohol dehydrogenase YP_005237458.1 1657771 D 588858 CDS YP_005237459.1 378450100 complement(1658872..1659528) 1 NC_016856.1 nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase; formate dehydrogenase-N subunit gamma 1659528 fdnI 588858001993 fdnI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S formate dehydrogenase-N subunit gamma YP_005237459.1 1658872 R 588858 CDS YP_005237460.1 378450101 complement(1659521..1660405) 1 NC_016856.1 similar to Escherichia coli formate dehydrogenase-N; nitrate-inducible; iron-sulfur beta subunit (AAD13439.1); Fe-S beta subunit; formate dehydrogenase-N beta subunit 1660405 fdnH 588858001994 fdnH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S formate dehydrogenase-N beta subunit YP_005237460.1 1659521 R 588858 CDS YP_005237461.1 378450102 complement(1660419..1663466) 1 NC_016856.1 similar to Escherichia coli formate dehydrogenase-N; nitrate-inducible (AAD13438.1); putative molybdopterin oxidoreductases; formate dehydrogenase-N subunit alpha 1663466 fdnG 588858001995 fdnG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S formate dehydrogenase-N subunit alpha YP_005237461.1 1660419 R 588858 CDS YP_005237462.1 378450103 1663489..1663641 1 NC_016856.1 hypothetical protein 1663641 588858001996 STM14_1895 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237462.1 1663489 D 588858 CDS YP_005237463.1 378450104 1663744..1664625 1 NC_016856.1 hypothetical protein 1664625 yddG 588858001997 yddG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237463.1 1663744 D 588858 CDS YP_005237464.1 378450105 complement(1664885..1665067) 1 NC_016856.1 hypothetical protein 1665067 588858001998 STM14_1897 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237464.1 1664885 R 588858 CDS YP_005237465.1 378450106 1665150..1666238 1 NC_016856.1 outer membrane porin protein PmpD (SW:OMPD_SALTY); putative outer membrane porin 1666238 nmpC 588858001999 nmpC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane porin YP_005237465.1 1665150 D 588858 CDS YP_005237466.1 378450107 1666322..1666762 1 NC_016856.1 putative cytoplasmic protein 1666762 588858002000 STM14_1899 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237466.1 1666322 D 588858 CDS YP_005237467.1 378450108 complement(1666787..1668274) 1 NC_016856.1 methyl viologen resistance protein SmvA (SW:SMVA_SALTY); methyl viologen resistance 1668274 smvA 588858002001 smvA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S methyl viologen resistance YP_005237467.1 1666787 R 588858 CDS YP_005237468.1 378450109 1668391..1668969 1 NC_016856.1 TetR family; putative transcriptional regulator 1668969 588858002002 STM14_1901 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005237468.1 1668391 D 588858 CDS YP_005237469.1 378450110 1668962..1669093 1 NC_016856.1 hypothetical protein 1669093 588858002003 STM14_1902 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237469.1 1668962 D 588858 CDS YP_005237470.1 378450111 1669184..1670572 1 NC_016856.1 nitrite extrusion protein 2; nitrite facilitator 2 (SW:NARU_SALTY); MFS superfamily; nitrate extrusion protein 1670572 narU 588858002004 narU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrate extrusion protein YP_005237470.1 1669184 D 588858 CDS YP_005237471.1 378450112 complement(1670559..1670702) 1 NC_016856.1 hypothetical protein 1670702 588858002005 STM14_1904 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237471.1 1670559 R 588858 CDS YP_005237472.1 378450113 1670664..1674404 1 NC_016856.1 similar to Escherichia coli cryptic nitrate reductase 2; alpha subunit (AAC74550.1); nitrate reductase 2 alpha subunit 1674404 narZ 588858002006 narZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrate reductase 2 alpha subunit YP_005237472.1 1670664 D 588858 CDS YP_005237473.1 378450114 1674401..1675945 1 NC_016856.1 similar to Escherichia coli cryptic nitrate reductase 2; beta subunit (AAC74549.1); nitrate reductase 2 beta subunit 1675945 narY 588858002007 narY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrate reductase 2 beta subunit YP_005237473.1 1674401 D 588858 CDS YP_005237474.1 378450115 1675945..1676640 1 NC_016856.1 similar to Escherichia coli cryptic nitrate reductase 2; delta subunit; assembly function (AAC74548.1); nitrate reductase 2 delta subunit 1676640 narW 588858002008 narW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrate reductase 2 delta subunit YP_005237474.1 1675945 D 588858 CDS YP_005237475.1 378450116 1676637..1677317 1 NC_016856.1 similar to Escherichia coli cryptic nitrate reductase 2; gamma subunit (AAC74547.1); nitrate reductase 2 gamma subunit 1677317 narV 588858002009 narV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrate reductase 2 gamma subunit YP_005237475.1 1676637 D 588858 CDS YP_005237476.1 378450117 1677423..1678316 1 NC_016856.1 hypothetical protein in nhoA 5'region (SW:YDDE_SALTY); hypothetical protein 1678316 yddE 588858002010 yddE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237476.1 1677423 D 588858 CDS YP_005237477.1 378450118 complement(1678352..1679197) 1 NC_016856.1 N-hydroxyarylamine O-acetyltransferase (SW:NHOA_SALTY); putative arylamine N-acetyltransferase 1679197 nhoA 588858002011 nhoA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative arylamine N-acetyltransferase YP_005237477.1 1678352 R 588858 CDS YP_005237478.1 378450119 complement(1679194..1679457) 1 NC_016856.1 hypothetical protein 1679457 588858002012 STM14_1911 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237478.1 1679194 R 588858 CDS YP_005237479.1 378450120 complement(1679481..1680113) 1 NC_016856.1 putative cytoplasmic protein 1680113 588858002013 STM14_1912 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237479.1 1679481 R 588858 CDS YP_005237480.1 378450121 1680178..1680390 1 NC_016856.1 hypothetical protein 1680390 588858002014 STM14_1913 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237480.1 1680178 D 588858 CDS YP_005237481.1 378450122 complement(1680335..1680472) 1 NC_016856.1 hypothetical protein 1680472 588858002015 STM14_1914 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237481.1 1680335 R 588858 CDS YP_005237482.1 378450123 1680342..1680476 1 NC_016856.1 hypothetical protein 1680476 588858002016 STM14_1915 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237482.1 1680342 D 588858 CDS YP_005237483.1 378450124 1680626..1682119 1 NC_016856.1 L-asparagine permease (L-asparagine transport protein) (SW:ANSP_SALTY); APC family; L-asparagine transport protein 1682119 ansP 588858002017 ansP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-asparagine transport protein YP_005237483.1 1680626 D 588858 CDS YP_005237484.1 378450125 complement(1682196..1682417) 1 NC_016856.1 putative outer membrane lipoprotein 1682417 588858002018 STM14_1917 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005237484.1 1682196 R 588858 CDS YP_005237485.1 378450126 complement(1682562..1683623) 1 NC_016856.1 similar to Escherichia coli putative receptor (AAC74534.1); hypothetical protein 1683623 588858002019 STM14_1918 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237485.1 1682562 R 588858 CDS YP_005237486.1 378450127 complement(1683664..1683783) 1 NC_016856.1 hypothetical protein 1683783 588858002020 STM14_1919 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237486.1 1683664 R 588858 CDS YP_005237487.1 378450128 1683887..1686007 1 NC_016856.1 similar to Escherichia coli putative outer membrane receptor for iron transport (AAC74533.1); putative outer membrane receptor 1686007 yncD 588858002021 yncD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane receptor YP_005237487.1 1683887 D 588858 CDS YP_005237488.1 378450129 complement(1686074..1686739) 1 NC_016856.1 GntR family; putative DNA-binding transcriptional regulator 1686739 yncC 588858002022 yncC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA-binding transcriptional regulator YP_005237488.1 1686074 R 588858 CDS YP_005237489.1 378450130 1686850..1686969 1 NC_016856.1 hypothetical protein 1686969 588858002023 STM14_1922 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237489.1 1686850 D 588858 CDS YP_005237490.1 378450131 complement(1686958..1687080) 1 NC_016856.1 hypothetical protein 1687080 588858002024 STM14_1923 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237490.1 1686958 R 588858 CDS YP_005237491.1 378450132 complement(1687073..1688143) 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC74531.1); putative NADP-dependent oxidoreductase 1688143 yncB 588858002025 yncB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative NADP-dependent oxidoreductase YP_005237491.1 1687073 R 588858 CDS YP_005237492.1 378450133 1688322..1688837 1 NC_016856.1 similar to Escherichia coli putative resistance protein (AAC74530.1); putative acyltransferase 1688837 yncA 588858002026 yncA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative acyltransferase YP_005237492.1 1688322 D 588858 CDS YP_005237493.1 378450134 1688837..1689286 1 NC_016856.1 putative inner membrane protein 1689286 ydcZ 588858002027 ydcZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237493.1 1688837 D 588858 CDS YP_005237494.1 378450135 complement(1689291..1689524) 1 NC_016856.1 putative cytoplasmic protein 1689524 ydcY 588858002028 ydcY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237494.1 1689291 R 588858 CDS YP_005237495.1 378450136 1689748..1691067 1 NC_016856.1 SrfA (gi|8347258); ssrAB-activated gene; putative virulence protein 1691067 srfA 588858002029 srfA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative virulence protein YP_005237495.1 1689748 D 588858 CDS YP_005237496.1 378450137 1691072..1694053 1 NC_016856.1 SrfB (gi|8347259); ssrAB-activated gene; putative virulence protein 1694053 srfB 588858002030 srfB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative virulence protein YP_005237496.1 1691072 D 588858 CDS YP_005237497.1 378450138 1694050..1696194 1 NC_016856.1 SrfC (gi|8347260); contains predicted coiled-coil structure; ssrAB-activated gene; putative virulence protein 1696194 srfC 588858002031 srfC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative virulence protein YP_005237497.1 1694050 D 588858 CDS YP_005237498.2 410023182 complement(1696239..1696421) 1 NC_016856.1 putative inner membrane protein 1696421 ydcX 588858002032 ydcX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237498.2 1696239 R 588858 CDS YP_005237499.2 410023183 1696611..1696706 1 NC_016856.1 hypothetical protein 1696706 588858002033 STM14_1932 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237499.2 1696611 D 588858 CDS YP_005237500.1 378450141 1696703..1696807 1 NC_016856.1 hypothetical protein 1696807 588858002034 STM14_1933 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237500.1 1696703 D 588858 CDS YP_005237501.1 378450142 complement(1696811..1698235) 1 NC_016856.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 1698235 ydcW 588858002035 ydcW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S gamma-aminobutyraldehyde dehydrogenase YP_005237501.1 1696811 R 588858 CDS YP_005237502.1 378450143 complement(1698371..1699795) 1 NC_016856.1 similar to Escherichia coli multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport system (AAC74521.1); GntR family; putative regulatory protein 1699795 ydcR 588858002036 ydcR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005237502.1 1698371 R 588858 CDS YP_005237503.1 378450144 complement(1699931..1700701) 1 NC_016856.1 D-alanyl-D-alanine dipeptidase for peptidoglycan digestion (gi|4585342); periplasmic dipeptidase precursor 1700701 pdgL 588858002037 pdgL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S periplasmic dipeptidase precursor YP_005237503.1 1699931 R 588858 CDS YP_005237504.1 378450145 complement(1700960..1701190) 1 NC_016856.1 putative inner membrane protein 1701190 588858002038 STM14_1937 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237504.1 1700960 R 588858 CDS YP_005237505.1 378450146 complement(1701223..1701621) 1 NC_016856.1 putative membrane protein UgtL (gi|4585341); similar to chitinase from Schizosaccharomyces; hypothetical protein 1701621 ugtL 588858002039 ugtL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237505.1 1701223 R 588858 CDS YP_005237506.1 378450147 complement(1701681..1701785) 1 NC_016856.1 hypothetical protein 1701785 588858002040 STM14_1939 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237506.1 1701681 R 588858 CDS YP_005237507.1 378450148 1702158..1703108 1 NC_016856.1 translocated by the type III secretion system SPI-2; localizes to Sifs in infected cells and specifically to Salmonella-containing vacuoles; secreted effector protein 1703108 sifB 588858002041 sifB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secreted effector protein YP_005237507.1 1702158 D 588858 CDS YP_005237508.1 378450149 1703382..1703612 1 NC_016856.1 hypothetical protein 1703612 yncJ 588858002042 yncJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237508.1 1703382 D 588858 CDS YP_005237509.1 378450150 complement(1703613..1705577) 1 NC_016856.1 similar to Escherichia coli putative collagenase (AAC74517.1); putative collagenase 1705577 ydcP 588858002043 ydcP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative collagenase YP_005237509.1 1703613 R 588858 CDS YP_005237510.1 378450151 complement(1705656..1706192) 1 NC_016856.1 oxidoreductase; putative repressor 1706192 ydcN 588858002044 ydcN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative repressor YP_005237510.1 1705656 R 588858 CDS YP_005237511.1 378450152 1706283..1707461 1 NC_016856.1 similar to Escherichia coli putative membrane transport protein (AAC74515.1); putative benzoate membrane transport protein 1707461 588858002045 STM14_1944 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative benzoate membrane transport protein YP_005237511.1 1706283 D 588858 CDS YP_005237512.1 378450153 complement(1707515..1708183) 1 NC_016856.1 putative outer membrane lipoprotein 1708183 588858002046 STM14_1945 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005237512.1 1707515 R 588858 CDS YP_005237513.1 378450154 complement(1708339..1708935) 1 NC_016856.1 with TehA confers resistance to tellurite; tellurite resistance protein TehB 1708935 tehB 588858002047 tehB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tellurite resistance protein TehB YP_005237513.1 1708339 R 588858 CDS YP_005237514.1 378450155 complement(1708922..1709935) 1 NC_016856.1 similar to Escherichia coli tellurite resistance (AAC74511.1); TDT family; potassium-tellurite ethidium and proflavin transporter 1709935 tehA 588858002048 tehA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S potassium-tellurite ethidium and proflavin transporter YP_005237514.1 1708922 R 588858 CDS YP_005237515.1 378450156 1710042..1711022 1 NC_016856.1 involved in lipopolysaccharide biosynthesis; putative nucleoside-diphosphate-sugar pyrophosphorylase 1711022 ydcK 588858002049 ydcK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative nucleoside-diphosphate-sugar pyrophosphorylase YP_005237515.1 1710042 D 588858 CDS YP_005237516.1 378450157 complement(1711019..1711558) 1 NC_016856.1 similar to Escherichia coli acetylase; acetylates N-terminal serine of 50S ribosomal subunit protein L7/L12 (AAC74509.1); ribosomal-protein-L7/L12-serine acetyltransferase 1711558 rimL 588858002050 rimL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribosomal-protein-L7/L12-serine acetyltransferase YP_005237516.1 1711019 R 588858 CDS YP_005237517.1 378450158 1711642..1711749 1 NC_016856.1 hypothetical protein 1711749 588858002051 STM14_1950 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237517.1 1711642 D 588858 CDS YP_005237518.1 378450159 1711775..1712893 1 NC_016856.1 similar to Escherichia coli putative lyase/synthase (AAC77261.1); putative cellulase protein 1712893 588858002052 STM14_1951 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cellulase protein YP_005237518.1 1711775 D 588858 CDS YP_005237519.1 378450160 1712890..1713171 1 NC_016856.1 similar to Escherichia coli galactitol-specific enzyme IIB of phosphotransferase system (AAC75154.1); putative PTS system enzymeIIB component 1713171 588858002053 STM14_1952 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative PTS system enzymeIIB component YP_005237519.1 1712890 D 588858 CDS YP_005237520.1 378450161 1713182..1714495 1 NC_016856.1 similar to Escherichia coli putative PTS system enzyme IIC component (AAC77260.1); putative PTS system enzyme IIC component 1714495 588858002054 STM14_1953 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative PTS system enzyme IIC component YP_005237520.1 1713182 D 588858 CDS YP_005237521.1 378450162 1714509..1715315 1 NC_016856.1 similar to Escherichia coli putative nucleoside triphosphatase (AAC77259.1); putative nucleoside triphosphatase 1715315 588858002055 STM14_1954 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative nucleoside triphosphatase YP_005237521.1 1714509 D 588858 CDS YP_005237522.1 378450163 1715447..1715884 1 NC_016856.1 similar to Escherichia coli putative PTS system enzyme II A component (AAC77258.1); putative sugar-specific PTS enzyme II 1715884 588858002056 STM14_1955 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sugar-specific PTS enzyme II YP_005237522.1 1715447 D 588858 CDS YP_005237523.1 378450164 1715896..1716528 1 NC_016856.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 1716528 588858002057 STM14_1956 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribulose-phosphate 3-epimerase YP_005237523.1 1715896 D 588858 CDS YP_005237524.1 378450165 1716544..1717335 1 NC_016856.1 similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC77256.1); DeoR family; putative transcriptional repressor of sgc operon 1717335 588858002058 STM14_1957 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional repressor of sgc operon YP_005237524.1 1716544 D 588858 CDS YP_005237525.1 378450166 1717335..1717772 1 NC_016856.1 cryptic aminoglycoside resistance protein 1717772 588858002059 STM14_1958 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cryptic aminoglycoside resistance protein YP_005237525.1 1717335 D 588858 CDS YP_005237526.1 378450167 complement(1717819..1719021) 1 NC_016856.1 similar to Escherichia coli L-lactate dehydrogenase (AAC76629.1); putative oxidase 1719021 588858002060 STM14_1959 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative oxidase YP_005237526.1 1717819 R 588858 CDS YP_005237527.1 378450168 complement(1719033..1719608) 1 NC_016856.1 hypothetical protein 1719608 588858002061 STM14_1960 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237527.1 1719033 R 588858 CDS YP_005237528.1 378450169 1719701..1719814 1 NC_016856.1 hypothetical protein 1719814 588858002062 STM14_1961 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237528.1 1719701 D 588858 CDS YP_005237529.1 378450170 complement(1719804..1721459) 1 NC_016856.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 1721459 mdoD 588858002063 mdoD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucan biosynthesis protein D YP_005237529.1 1719804 R 588858 CDS YP_005237530.1 378450171 complement(1721679..1723187) 1 NC_016856.1 putative carboxylesterase 1723187 588858002064 STM14_1963 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative carboxylesterase YP_005237530.1 1721679 R 588858 CDS YP_005237531.1 378450172 complement(1723236..1724579) 1 NC_016856.1 putative cytoplasmic protein 1724579 588858002065 STM14_1964 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237531.1 1723236 R 588858 CDS YP_005237532.1 378450173 1724872..1725795 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74504.1); LysR family; putative transcriptional regulator 1725795 ydcI 588858002066 ydcI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005237532.1 1724872 D 588858 CDS YP_005237533.1 378450174 complement(1725856..1727481) 1 NC_016856.1 similar to Escherichia coli methyl-accepting chemotaxis protein III; ribose and galactose sensor receptor (AAC74503.1); methyl-accepting chemotaxis protein III 1727481 trg 588858002067 trg Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S methyl-accepting chemotaxis protein III YP_005237533.1 1725856 R 588858 CDS YP_005237534.1 378450175 1727480..1727695 1 NC_016856.1 hypothetical protein 1727695 588858002068 STM14_1967 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237534.1 1727480 D 588858 CDS YP_005237535.1 378450176 complement(1727650..1728768) 1 NC_016856.1 similar to Escherichia coli alcohol dehydrogenase class III; formaldehyde dehydrogenase; glutathione-dependent (AAC73459.1); alcohol dehydrogenase class III 1728768 588858002069 STM14_1968 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S alcohol dehydrogenase class III YP_005237535.1 1727650 R 588858 CDS YP_005237536.1 378450177 complement(1728800..1729075) 1 NC_016856.1 similar to Escherichia coli putative alpha helix chain (AAC73460.1); putative cytoplasmic protein 1729075 588858002070 STM14_1969 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237536.1 1728800 R 588858 CDS YP_005237537.1 378450178 1729598..1729999 1 NC_016856.1 putative dipicolinate reductase 1729999 588858002071 STM14_1970 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dipicolinate reductase YP_005237537.1 1729598 D 588858 CDS YP_005237538.1 378450179 complement(1730128..1730844) 1 NC_016856.1 putative inner membrane protein 1730844 588858002072 STM14_1971 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237538.1 1730128 R 588858 CDS YP_005237539.1 378450180 complement(1731028..1731132) 1 NC_016856.1 hypothetical protein 1731132 588858002073 STM14_1972 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237539.1 1731028 R 588858 CDS YP_005237540.1 378450181 1731115..1731225 1 NC_016856.1 hypothetical protein 1731225 588858002074 STM14_1973 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237540.1 1731115 D 588858 CDS YP_005237541.1 378450182 1731270..1732496 1 NC_016856.1 secreted effector J (gi|9931614); Salmonella translocated effector; regulated by SPI-2; secreted effector protein 1732496 sseJ 588858002075 sseJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secreted effector protein YP_005237541.1 1731270 D 588858 CDS YP_005237542.1 378450183 complement(1732617..1732961) 1 NC_016856.1 putative inner membrane protein 1732961 588858002076 STM14_1975 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237542.1 1732617 R 588858 CDS YP_005237543.1 378450184 complement(1733662..1733814) 1 NC_016856.1 hypothetical protein 1733814 588858002077 STM14_1976 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237543.1 1733662 R 588858 CDS YP_005237544.1 378450185 1733868..1734629 1 NC_016856.1 similar to Escherichia coli putative periplasmic binding transport protein (AAC74987.1); putative periplasmic binding protein 1734629 588858002078 STM14_1977 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative periplasmic binding protein YP_005237544.1 1733868 D 588858 CDS YP_005237545.1 378450186 1734636..1735283 1 NC_016856.1 similar to Escherichia coli putative transport system permease protein; formerly yecC (AAC74985.1); amino acid; putative ABC transporter permease 1735283 588858002079 STM14_1978 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter permease YP_005237545.1 1734636 D 588858 CDS YP_005237546.1 378450187 1735308..1736039 1 NC_016856.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC76303.1); putative ABC-type polar amino acid transport system ATPase component 1736039 588858002080 STM14_1979 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type polar amino acid transport system ATPase component YP_005237546.1 1735308 D 588858 CDS YP_005237547.1 378450188 1736036..1736716 1 NC_016856.1 similar to Escherichia coli putative transport system permease protein; formerly yecC (AAC74985.1); putative ABC-type transport system membrane component 1736716 588858002081 STM14_1980 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type transport system membrane component YP_005237547.1 1736036 D 588858 CDS YP_005237548.1 378450189 1736853..1738403 1 NC_016856.1 putative inner membrane protein 1738403 588858002082 STM14_1981 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237548.1 1736853 D 588858 CDS YP_005237549.1 378450190 1738867..1739529 1 NC_016856.1 putative SAM-dependent methyltransferase 1739529 588858002083 STM14_1982 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative SAM-dependent methyltransferase YP_005237549.1 1738867 D 588858 CDS YP_005237550.1 378450191 complement(1739800..1740330) 1 NC_016856.1 B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm; cytochrome b561 1740330 cybB 588858002084 cybB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome b561 YP_005237550.1 1739800 R 588858 CDS YP_005237551.1 378450192 complement(1740447..1741247) 1 NC_016856.1 putative inner membrane protein 1741247 ydcF 588858002085 ydcF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237551.1 1740447 R 588858 CDS YP_005237552.1 378450193 complement(1741311..1745156) 1 NC_016856.1 involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA 1745156 hrpA 588858002086 hrpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-dependent RNA helicase HrpA YP_005237552.1 1741311 R 588858 CDS YP_005237553.1 378450194 1745414..1746019 1 NC_016856.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 1746019 acpD 588858002087 acpD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S azoreductase YP_005237553.1 1745414 D 588858 CDS YP_005237554.1 378450195 complement(1746016..1746465) 1 NC_016856.1 putative inner membrane protein 1746465 588858002088 STM14_1987 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237554.1 1746016 R 588858 CDS YP_005237555.1 378450196 complement(1746608..1746931) 1 NC_016856.1 hypothetical protein 1746931 ydbL 588858002089 ydbL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237555.1 1746608 R 588858 CDS YP_005237556.1 378450197 complement(1746939..1747130) 1 NC_016856.1 putative outer membrane lipoprotein 1747130 ynbE 588858002090 ynbE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005237556.1 1746939 R 588858 CDS YP_005237557.1 378450198 complement(1747130..1749766) 1 NC_016856.1 hypothetical protein 1749766 ydbH 588858002091 ydbH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237557.1 1747130 R 588858 CDS YP_005237558.1 378450199 1750006..1750995 1 NC_016856.1 Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes; D-lactate dehydrogenase 1750995 ldhA 588858002092 ldhA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-lactate dehydrogenase YP_005237558.1 1750006 D 588858 CDS YP_005237559.1 378450200 1751106..1751516 1 NC_016856.1 similar to Escherichia coli heat shock protein hslJ (AAC74461.1); heat-inducible protein 1751516 hslJ 588858002093 hslJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S heat-inducible protein YP_005237559.1 1751106 D 588858 CDS YP_005237560.2 410023184 complement(1751560..1751826) 1 NC_016856.1 putative cytoplasmic protein 1751826 588858002094 STM14_1993 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237560.2 1751560 R 588858 CDS YP_005237561.1 378450202 1751742..1752041 1 NC_016856.1 hypothetical protein 1752041 588858002095 STM14_1994 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237561.1 1751742 D 588858 CDS YP_005237562.1 378450203 1752102..1755626 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase; Fe-S subunit (AAC74460.1); putative pyruvate-flavodoxin oxidoreductase 1755626 nifJ 588858002096 nifJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative pyruvate-flavodoxin oxidoreductase YP_005237562.1 1752102 D 588858 CDS YP_005237563.1 378450204 complement(1755685..1755894) 1 NC_016856.1 hypothetical protein 1755894 588858002097 STM14_1996 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237563.1 1755685 R 588858 CDS YP_005237564.1 378450205 1756108..1756542 1 NC_016856.1 similar to Escherichia coli putative filament protein (AAC74458.1); putative universal stress protein 1756542 ynaF 588858002098 ynaF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative universal stress protein YP_005237564.1 1756108 D 588858 CDS YP_005237565.1 378450206 complement(1756592..1756930) 1 NC_016856.1 similar to Escherichia coli methylviologen resistance (AAC73644.1); putative membrane transporter of cations 1756930 588858002099 STM14_1998 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative membrane transporter of cations YP_005237565.1 1756592 R 588858 CDS YP_005237566.1 378450207 1757094..1757234 1 NC_016856.1 Rac prophage; integrase 1757234 588858002100 STM14_1999 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Rac prophage; integrase YP_005237566.1 1757094 D 588858 CDS YP_005237567.1 378450208 1757286..1758221 1 NC_016856.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1758221 ydaO 588858002101 ydaO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S C32 tRNA thiolase YP_005237567.1 1757286 D 588858 CDS YP_005237568.1 378450209 complement(1758265..1759638) 1 NC_016856.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 1759638 dbpA 588858002102 dbpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-dependent RNA helicase DbpA YP_005237568.1 1758265 R 588858 CDS YP_005237569.1 378450210 complement(1760125..1761108) 1 NC_016856.1 zinc transporter 1761108 zntB 588858002103 zntB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S zinc transporter YP_005237569.1 1760125 R 588858 CDS YP_005237570.1 378450211 complement(1761254..1762408) 1 NC_016856.1 similar to Escherichia coli methyl-accepting chemotaxis protein I serine sensor receptor (AAC77311.1); similar to C-terminus of many MCPs; putative methyl-accepting chemotaxis protein 1762408 588858002104 STM14_2003 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative methyl-accepting chemotaxis protein YP_005237570.1 1761254 R 588858 CDS YP_005237571.1 378450212 complement(1762419..1762580) 1 NC_016856.1 hypothetical protein 1762580 588858002105 STM14_2004 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237571.1 1762419 R 588858 CDS YP_005237572.1 378450213 complement(1762819..1763382) 1 NC_016856.1 contains putative Smr domain; hypothetical protein 1763382 ydaL 588858002106 ydaL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237572.1 1762819 R 588858 CDS YP_005237573.1 378450214 1763640..1764155 1 NC_016856.1 methylated-DNA protein-cysteine methyltransferase (SW:OGT_SALTY); O-6-alkylguanine-DNA:cysteine-protein methyltransferase 1764155 ogt 588858002107 ogt Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S O-6-alkylguanine-DNA:cysteine-protein methyltransferase YP_005237573.1 1763640 D 588858 CDS YP_005237574.1 378450215 1764351..1765103 1 NC_016856.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 1765103 fnr 588858002108 fnr Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fumarate/nitrate reduction transcriptional regulator YP_005237574.1 1764351 D 588858 CDS YP_005237575.1 378450216 1765254..1766201 1 NC_016856.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 1766201 ydaA 588858002109 ydaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S universal stress protein UspE YP_005237575.1 1765254 D 588858 CDS YP_005237576.2 410023185 complement(1766256..1766510) 1 NC_016856.1 putative inner membrane protein 1766510 ynaJ 588858002110 ynaJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237576.2 1766256 R 588858 CDS YP_005237577.1 378450218 1766749..1767780 1 NC_016856.1 putative integral membrane protein 1767780 ynaI 588858002111 ynaI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative integral membrane protein YP_005237577.1 1766749 D 588858 CDS YP_005237578.1 378450219 complement(1767866..1768468) 1 NC_016856.1 putative transcriptional regulator 1768468 588858002112 STM14_2011 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005237578.1 1767866 R 588858 CDS YP_005237579.1 378450220 1768512..1769198 1 NC_016856.1 putative cytoplasmic protein 1769198 588858002113 STM14_2012 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237579.1 1768512 D 588858 CDS YP_005237580.1 378450221 complement(1769670..1770227) 1 NC_016856.1 similar to Escherichia coli thiol peroxidase (AAC74406.1); putative thiol peroxidase 1770227 588858002115 STM14_2014 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative thiol peroxidase YP_005237580.1 1769670 R 588858 CDS YP_005237581.1 378450222 complement(1770326..1771156) 1 NC_016856.1 hypothetical protein 1771156 588858002116 STM14_2015 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237581.1 1770326 R 588858 CDS YP_005237582.1 378450223 complement(1771177..1773159) 1 NC_016856.1 similar to Escherichia coli putative factor (AAC74304.1); similar to invasin C of Yersinia; intimin; invasin-like protein 1773159 588858002117 STM14_2016 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S invasin-like protein YP_005237582.1 1771177 R 588858 CDS YP_005237583.1 378450224 complement(1773234..1774079) 1 NC_016856.1 putative lipoprotein 1774079 588858002118 STM14_2017 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative lipoprotein YP_005237583.1 1773234 R 588858 CDS YP_006894089.1 410023225 1775622..1776731 1 NC_016856.1 hypothetical protein 1776731 588858002120 STM14_2019 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_006894089.1 1775622 D 588858 CDS YP_005237584.2 410023186 complement(1776945..1777181) 1 NC_016856.1 putative outer membrane lipoprotein 1777181 588858002121 STM14_2020 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005237584.2 1776945 R 588858 CDS YP_005237585.1 378450226 complement(1777310..1777900) 1 NC_016856.1 AraC family; helix-turn-helix; putative regulatory protein 1777900 588858002122 STM14_2021 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005237585.1 1777310 R 588858 CDS YP_005237586.1 378450227 1777978..1778691 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC77206.1); oxidoreductase 1778691 588858002123 STM14_2022 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S oxidoreductase YP_005237586.1 1777978 D 588858 CDS YP_005237587.1 378450228 complement(1778782..1779651) 1 NC_016856.1 putative aldo/keto reductase 1779651 588858002124 STM14_2023 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative aldo/keto reductase YP_005237587.1 1778782 R 588858 CDS YP_005237588.1 378450229 complement(1779789..1779902) 1 NC_016856.1 hypothetical protein 1779902 588858002125 STM14_2024 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237588.1 1779789 R 588858 CDS YP_005237589.1 378450230 complement(1779925..1780830) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76546.1); LysR family; putative transcriptional regulator 1780830 588858002126 STM14_2025 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005237589.1 1779925 R 588858 CDS YP_005237590.1 378450231 1780949..1781878 1 NC_016856.1 putative 2'-hydroxyisoflavone reductase 1781878 588858002127 STM14_2026 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative 2'-hydroxyisoflavone reductase YP_005237590.1 1780949 D 588858 CDS YP_005237591.1 378450232 complement(1781975..1783588) 1 NC_016856.1 similar to Escherichia coli putative transport periplasmic protein (AAC74411.1); negative regulator of mulitple antibiotic resistance; periplasmic murein tripeptide transport protein 1783588 mppA 588858002128 mppA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S periplasmic murein tripeptide transport protein YP_005237591.1 1781975 R 588858 CDS YP_005237592.1 378450233 1783778..1784506 1 NC_016856.1 similar to Escherichia coli putative carboxypeptidase (AAC74408.1); murein peptide amidase A 1784506 ycjI 588858002129 ycjI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S murein peptide amidase A YP_005237592.1 1783778 D 588858 CDS YP_005237593.1 378450234 complement(1784481..1785446) 1 NC_016856.1 similar to Escherichia coli putative muconate cycloisomerase I (AAC74407.1); putative chloromuconate cycloisomerase 1785446 ycjG 588858002130 ycjG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative chloromuconate cycloisomerase YP_005237593.1 1784481 R 588858 CDS YP_005237594.1 378450235 1785562..1786068 1 NC_016856.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1786068 tpx 588858002131 tpx Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiol peroxidase YP_005237594.1 1785562 D 588858 CDS YP_005237595.1 378450236 1786154..1786342 1 NC_016856.1 hypothetical protein 1786342 588858002132 STM14_2031 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237595.1 1786154 D 588858 CDS YP_005237596.1 378450237 1786299..1786757 1 NC_016856.1 transposase for insertion sequence element IS200 (SW:T200_SALTY); transposase 1786757 tnpA_5 588858002133 tnpA_5 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transposase YP_005237596.1 1786299 D 588858 CDS YP_005237597.1 378450238 complement(1786870..1788411) 1 NC_016856.1 regulates genes involved in the biosynthesis and transport of aromatic amino acids; DNA-binding transcriptional regulator TyrR 1788411 tyrR 588858002134 tyrR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator TyrR YP_005237597.1 1786870 R 588858 CDS YP_005237598.1 378450239 complement(1788559..1789620) 1 NC_016856.1 hypothetical protein 1789620 ycjF 588858002135 ycjF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237598.1 1788559 R 588858 CDS YP_005237599.1 378450240 complement(1789617..1791020) 1 NC_016856.1 similar to Escherichia coli putative enzymes (AAC74403.1); putative ATPase 1791020 ycjX 588858002136 ycjX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ATPase YP_005237599.1 1789617 R 588858 CDS YP_005237600.1 378450241 complement(1791163..1791477) 1 NC_016856.1 similar to Escherichia coli phage shock protein (AAC74390.1); thiosulfate:cyanide sulfurtransferase 1791477 pspE 588858002137 pspE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiosulfate:cyanide sulfurtransferase YP_005237600.1 1791163 R 588858 CDS YP_005237601.1 378450242 complement(1791553..1791771) 1 NC_016856.1 similar to Escherichia coli phage shock protein (AAC74389.1); peripheral inner membrane phage-shock protein 1791771 pspD 588858002138 pspD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peripheral inner membrane phage-shock protein YP_005237601.1 1791553 R 588858 CDS YP_005237602.1 378450243 complement(1791794..1792153) 1 NC_016856.1 with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock; DNA-binding transcriptional activator PspC 1792153 pspC 588858002139 pspC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional activator PspC YP_005237602.1 1791794 R 588858 CDS YP_005237603.1 378450244 complement(1792153..1792377) 1 NC_016856.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 1792377 pspB 588858002140 pspB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage shock protein B YP_005237603.1 1792153 R 588858 CDS YP_005237604.1 378450245 complement(1792437..1793105) 1 NC_016856.1 involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; phage shock protein PspA 1793105 pspA 588858002141 pspA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage shock protein PspA YP_005237604.1 1792437 R 588858 CDS YP_005237605.1 378450246 1793276..1794256 1 NC_016856.1 transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; phage shock protein operon transcriptional activator 1794256 pspF 588858002142 pspF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage shock protein operon transcriptional activator YP_005237605.1 1793276 D 588858 CDS YP_005237606.1 378450247 1794368..1796017 1 NC_016856.1 peptide transport periplasmic protein SapA precursor (SW:SAPA_SALTY); ABC superfamily periplasmic protein; peptide transport protein 1796017 sapA 588858002143 sapA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptide transport protein YP_005237606.1 1794368 D 588858 CDS YP_005237607.1 378450248 1796014..1796979 1 NC_016856.1 peptide transport system permease protein SapB (SW:SAPB_SALTY); ABC superfamily membrane protein; peptide transport protein 1796979 sapB 588858002144 sapB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptide transport protein YP_005237607.1 1796014 D 588858 CDS YP_005237608.1 378450249 1796966..1797856 1 NC_016856.1 peptide transport system permease protein SapC (SW:SAPC_SALTY); ABC superfamily membrane protein; peptide transport protein 1797856 sapC 588858002145 sapC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptide transport protein YP_005237608.1 1796966 D 588858 CDS YP_005237609.1 378450250 1797856..1798848 1 NC_016856.1 peptide transport system atp-binding protein SapD (SW:SAPD_SALTY); ABC superfamily ATP-binding protein; peptide transport protein 1798848 sapD 588858002146 sapD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptide transport protein YP_005237609.1 1797856 D 588858 CDS YP_005237610.1 378450251 1798850..1799656 1 NC_016856.1 peptide transport system atp-binding protein SapF (SW:SAPF_SALTY); ABC superfamily ATP-binding protein; peptide transport protein 1799656 sapF 588858002147 sapF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptide transport protein YP_005237610.1 1798850 D 588858 CDS YP_005237611.1 378450252 complement(1799672..1800379) 1 NC_016856.1 putative diguanylate cyclase/phosphodiesterase domain 2; hypothetical protein 1800379 588858002148 STM14_2047 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237611.1 1799672 R 588858 CDS YP_005237612.1 378450253 complement(1800491..1800637) 1 NC_016856.1 hypothetical protein 1800637 588858002149 STM14_2048 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237612.1 1800491 R 588858 CDS YP_005237613.1 378450254 1800647..1800769 1 NC_016856.1 hypothetical protein 1800769 588858002150 STM14_2049 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237613.1 1800647 D 588858 CDS YP_005237614.1 378450255 complement(1800846..1802219) 1 NC_016856.1 putative inner membrane protein 1802219 588858002151 STM14_2050 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237614.1 1800846 R 588858 CDS YP_005237615.1 378450256 1802254..1802433 1 NC_016856.1 putative e6 protein; hypothetical protein 1802433 588858002152 STM14_2051 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237615.1 1802254 D 588858 CDS YP_005237616.1 378450257 1802408..1802707 1 NC_016856.1 hypothetical 10.4 kDa protein in fabI/envM 5'region (SW:YCJE_SALTY); putative cytoplasmic protein 1802707 ycjE 588858002153 ycjE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237616.1 1802408 D 588858 CDS YP_005237617.1 378450258 1802825..1803613 1 NC_016856.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 1803613 fabI 588858002154 fabI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S enoyl-ACP reductase YP_005237617.1 1802825 D 588858 CDS YP_005237618.1 378450259 complement(1803682..1803798) 1 NC_016856.1 hypothetical protein 1803798 588858002155 STM14_2054 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237618.1 1803682 R 588858 CDS YP_005237619.1 378450260 1803813..1804946 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC74369.1); putative cytoplasmic protein 1804946 yciW 588858002156 yciW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237619.1 1803813 D 588858 CDS YP_005237620.1 378450261 1805035..1806969 1 NC_016856.1 Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 1806969 rnb 588858002157 rnb Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S exoribonuclease II YP_005237620.1 1805035 D 588858 CDS YP_005237621.1 378450262 1807079..1807216 1 NC_016856.1 hypothetical protein 1807216 588858002158 STM14_2057 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237621.1 1807079 D 588858 CDS YP_005237622.1 378450263 1807231..1809213 1 NC_016856.1 c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; RNase II stability modulator 1809213 yciR 588858002159 yciR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S RNase II stability modulator YP_005237622.1 1807231 D 588858 CDS YP_005237623.1 378450264 1809302..1809514 1 NC_016856.1 hypothetical protein 1809514 588858002160 STM14_2059 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237623.1 1809302 D 588858 CDS YP_005237624.1 378450265 1809601..1810353 1 NC_016856.1 similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC74366.1); DeoR family; putative regulatory protein 1810353 yciT 588858002161 yciT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005237624.1 1809601 D 588858 CDS YP_005237625.1 378450266 complement(1810467..1810628) 1 NC_016856.1 hypothetical protein 1810628 588858002162 STM14_2061 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237625.1 1810467 R 588858 CDS YP_005237626.1 378450267 1810612..1810830 1 NC_016856.1 osmotically inducible lipoprotein B (SW:OSMB_SALTY); osmotically inducible; lipoprotein 1810830 osmB 588858002163 osmB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipoprotein YP_005237626.1 1810612 D 588858 CDS YP_005237627.1 378450268 complement(1810950..1811276) 1 NC_016856.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 1811276 yciH 588858002164 yciH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S translation initiation factor Sui1 YP_005237627.1 1810950 R 588858 CDS YP_005237628.1 378450269 complement(1811276..1812013) 1 NC_016856.1 OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1812013 pyrF 588858002165 pyrF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S orotidine 5'-phosphate decarboxylase YP_005237628.1 1811276 R 588858 CDS YP_005237629.1 378450270 1812029..1812142 1 NC_016856.1 hypothetical protein 1812142 588858002166 STM14_2065 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237629.1 1812029 D 588858 CDS YP_005237630.1 378450271 complement(1812204..1813373) 1 NC_016856.1 similar to Escherichia coli putative heat shock protein (AAC74362.1); hypothetical protein 1813373 yciM 588858002167 yciM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237630.1 1812204 R 588858 CDS YP_005237631.1 378450272 complement(1813380..1813688) 1 NC_016856.1 putative inner membrane protein 1813688 yciS 588858002168 yciS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237631.1 1813380 R 588858 CDS YP_005237632.1 378450273 complement(1813838..1814602) 1 NC_016856.1 similar to Escherichia coli non-essential phosphatidylglycerophosphate phosphatase, membrane bound (AAC74360.1); phosphatidylglycerophosphatase B 1814602 pgpB 588858002169 pgpB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphatidylglycerophosphatase B YP_005237632.1 1813838 R 588858 CDS YP_005237633.1 378450274 1814798..1815388 1 NC_016856.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1815388 ribA 588858002170 ribA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S GTP cyclohydrolase II YP_005237633.1 1814798 D 588858 CDS YP_005237634.1 378450275 complement(1815444..1818119) 1 NC_016856.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1818119 acnA 588858002171 acnA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aconitate hydratase YP_005237634.1 1815444 R 588858 CDS YP_005237635.1 378450276 complement(1818504..1818674) 1 NC_016856.1 hypothetical protein 1818674 588858002172 STM14_2071 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237635.1 1818504 R 588858 CDS YP_005237636.1 378450277 complement(1819096..1820070) 1 NC_016856.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1820070 cysB 588858002173 cysB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator CysB YP_005237636.1 1819096 R 588858 CDS YP_005237637.1 378450278 1820026..1820190 1 NC_016856.1 hypothetical protein 1820190 588858002174 STM14_2073 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237637.1 1820026 D 588858 CDS YP_005237638.1 378450279 complement(1820225..1820401) 1 NC_016856.1 hypothetical protein 1820401 588858002175 STM14_2074 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237638.1 1820225 R 588858 CDS YP_005237639.1 378450280 complement(1820481..1823078) 1 NC_016856.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1823078 topA 588858002176 topA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA topoisomerase I YP_005237639.1 1820481 R 588858 CDS YP_005237640.1 378450281 complement(1823233..1823364) 1 NC_016856.1 hypothetical protein 1823364 588858002177 STM14_2076 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237640.1 1823233 R 588858 CDS YP_005237641.1 378450282 1823481..1823732 1 NC_016856.1 hypothetical protein 1823732 yciN 588858002178 yciN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237641.1 1823481 D 588858 CDS YP_005237642.1 378450283 complement(1823774..1824820) 1 NC_016856.1 SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 1824820 sohB 588858002179 sohB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative periplasmic protease YP_005237642.1 1823774 R 588858 CDS YP_005237643.1 378450284 1824904..1825014 1 NC_016856.1 hypothetical protein 1825014 588858002180 STM14_2079 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237643.1 1824904 D 588858 CDS YP_005237644.1 378450285 1825058..1825819 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC74353.1); short chain dehydrogenase 1825819 yciK 588858002181 yciK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S short chain dehydrogenase YP_005237644.1 1825058 D 588858 CDS YP_005237645.1 378450286 1825816..1826406 1 NC_016856.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1826406 btuR 588858002182 btuR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cob(I)yrinic acid a,c-diamide adenosyltransferase YP_005237645.1 1825816 D 588858 CDS YP_005237646.1 378450287 complement(1826493..1827368) 1 NC_016856.1 catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; 23S rRNA pseudouridylate synthase B 1827368 yciL 588858002183 yciL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 23S rRNA pseudouridylate synthase B YP_005237646.1 1826493 R 588858 CDS YP_005237647.1 378450288 complement(1828097..1828978) 1 NC_016856.1 TrpH protein (SW:TRPH_SALTY); TrpR controlled transcriptional unit in the 5' upstream region of the trp operon; hypothetical protein 1828978 trpH 588858002185 trpH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237647.1 1828097 R 588858 CDS YP_005237648.1 378450289 1829100..1829144 1 NC_016856.1 trp operon leader peptide (SW:LPW_SALTY); trp operon leader peptide 1829144 trpL 588858002186 trpL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S trp operon leader peptide YP_005237648.1 1829100 D 588858 CDS YP_005237649.1 378450290 1829239..1830801 1 NC_016856.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1830801 trpE 588858002187 trpE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S anthranilate synthase component I YP_005237649.1 1829239 D 588858 CDS YP_005237650.1 378450291 1830801..1832396 1 NC_016856.1 TrpD; with Trp E catalyzes the formation of anthranilate from chorismate and glutamine, TrpE provides the glutamine amidotransferase activity; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase 1832396 trpD 588858002188 trpD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase YP_005237650.1 1830801 D 588858 CDS YP_005237651.1 378450292 1832400..1833758 1 NC_016856.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1833758 trpC 588858002189 trpC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_005237651.1 1832400 D 588858 CDS YP_005237652.1 378450293 1833768..1834961 1 NC_016856.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1834961 trpB 588858002190 trpB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tryptophan synthase subunit beta YP_005237652.1 1833768 D 588858 CDS YP_005237653.1 378450294 1834961..1835767 1 NC_016856.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1835767 trpA 588858002191 trpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tryptophan synthase subunit alpha YP_005237653.1 1834961 D 588858 CDS YP_005237654.1 378450295 1836247..1836429 1 NC_016856.1 putative cytoplasmic protein 1836429 yciG 588858002192 yciG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237654.1 1836247 D 588858 CDS YP_005237655.1 378450296 1836519..1837022 1 NC_016856.1 similar to Escherichia coli putative structural proteins (AAC74340.1); putative cytoplasmic protein 1837022 yciF 588858002193 yciF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237655.1 1836519 D 588858 CDS YP_005237656.1 378450297 1837096..1837602 1 NC_016856.1 putative cytoplasmic protein 1837602 yciE 588858002194 yciE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237656.1 1837096 D 588858 CDS YP_005237657.1 378450298 1837622..1838500 1 NC_016856.1 putative catalase (gi|7162108); putative catalase 1838500 588858002195 STM14_2094 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative catalase YP_005237657.1 1837622 D 588858 CDS YP_005237658.1 378450299 complement(1838582..1839220) 1 NC_016856.1 receptor for colicin S4; outer membrane protein W 1839220 ompW 588858002196 ompW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane protein W YP_005237658.1 1838582 R 588858 CDS YP_005237659.1 378450300 1839558..1839962 1 NC_016856.1 similar to Escherichia coli putative ferredoxin (AAC73391.1); putative ferredoxin 1839962 588858002197 STM14_2096 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ferredoxin YP_005237659.1 1839558 D 588858 CDS YP_005237660.1 378450301 1839988..1840731 1 NC_016856.1 hypothetical protein 1840731 yciC 588858002198 yciC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237660.1 1839988 D 588858 CDS YP_005237661.1 378450302 1840788..1841327 1 NC_016856.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1841327 yciB 588858002199 yciB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S intracellular septation protein A YP_005237661.1 1840788 D 588858 CDS YP_005237662.1 378450303 1841488..1841889 1 NC_016856.1 YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins; acyl-CoA thioester hydrolase 1841889 yciA 588858002200 yciA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acyl-CoA thioester hydrolase YP_005237662.1 1841488 D 588858 CDS YP_005237663.2 410023187 complement(1841949..1842686) 1 NC_016856.1 membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins; transporter 1842686 tonB 588858002201 tonB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transporter YP_005237663.2 1841949 R 588858 CDS YP_005237664.1 378450305 1842901..1843197 1 NC_016856.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 1843197 yciI 588858002202 yciI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S YciI-like protein YP_005237664.1 1842901 D 588858 CDS YP_005237665.1 378450306 complement(1843241..1843414) 1 NC_016856.1 hypothetical protein 1843414 588858002203 STM14_2102 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237665.1 1843241 R 588858 CDS YP_005237666.1 378450307 1843557..1845017 1 NC_016856.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 1845017 cls 588858002204 cls Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cardiolipin synthetase YP_005237666.1 1843557 D 588858 CDS YP_006894090.1 410023226 1845051..1845380 1 NC_016856.1 dsDNA-mimic protein 1845380 yciU 588858002205 yciU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dsDNA-mimic protein YP_006894090.1 1845051 D 588858 CDS YP_005237667.1 378450308 complement(1845428..1846264) 1 NC_016856.1 putative voltage-gated potassium channel 1846264 588858002206 STM14_2105 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative voltage-gated potassium channel YP_005237667.1 1845428 R 588858 CDS YP_005237668.1 378450309 complement(1846312..1847316) 1 NC_016856.1 oligopeptide transport ATP-binding protein; OppF (SW:OPPF_SALTY); ABC superfamily ATP-binding protein; oligopeptide transport protein 1847316 oppF 588858002207 oppF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S oligopeptide transport protein YP_005237668.1 1846312 R 588858 CDS YP_005237669.1 378450310 complement(1847313..1848320) 1 NC_016856.1 oligopeptide transport ATP-binding protein OppD (SW:OPPD_SALTY); ABC superfamily ATP-binding protein; oligopeptide ABC transporter ATP-binding protein 1848320 oppD 588858002208 oppD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S oligopeptide ABC transporter ATP-binding protein YP_005237669.1 1847313 R 588858 CDS YP_005237670.1 378450311 complement(1848332..1849240) 1 NC_016856.1 oligopeptide transport system permease protein OppC (SW:OPPC_SALTY); ABC superfamily membrane protein; oligopeptide transport protein 1849240 oppC 588858002209 oppC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S oligopeptide transport protein YP_005237670.1 1848332 R 588858 CDS YP_005237671.1 378450312 complement(1849255..1850175) 1 NC_016856.1 oligopeptide transport system permease protein OppB (SW:OPPB_SALTY); ABC superfamily membrane protein; oligopeptide transporter permease 1850175 oppB 588858002210 oppB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S oligopeptide transporter permease YP_005237671.1 1849255 R 588858 CDS YP_005237672.1 378450313 complement(1850297..1851928) 1 NC_016856.1 periplasmic oligopeptide-binding protein precursor (SW:OPPA_SALTY); ABC superfamily periplasmic protein; contains chaperone properties; oligopeptide transport protein 1851928 oppA 588858002211 oppA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S oligopeptide transport protein YP_005237672.1 1850297 R 588858 CDS YP_005237673.1 378450314 1851996..1852310 1 NC_016856.1 putative inner membrane protein 1852310 588858002212 STM14_2111 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237673.1 1851996 D 588858 CDS YP_005237674.1 378450315 complement(1852693..1853340) 1 NC_016856.1 similar to Escherichia coli putative channel protein (AAC74324.1); MarC family; hypothetical protein 1853340 ychE 588858002213 ychE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237674.1 1852693 R 588858 CDS YP_005237675.1 378450316 1853817..1856495 1 NC_016856.1 similar to Escherichia coli CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase (AAC74323.1); multifunctional alcohol dehydrogenase AdhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1856495 adhE 588858002214 adhE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_005237675.1 1853817 D 588858 CDS YP_005237676.1 378450317 complement(1856692..1857309) 1 NC_016856.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1857309 tdk_2 588858002215 tdk_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thymidine kinase YP_005237676.1 1856692 R 588858 CDS YP_005237677.1 378450318 1857497..1857622 1 NC_016856.1 hypothetical protein 1857622 588858002216 STM14_2115 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237677.1 1857497 D 588858 CDS YP_005237678.1 378450319 1857972..1858385 1 NC_016856.1 DNA-binding protein H-NS; histone-like protein HLP-II; protein H1; protein B1 (SW:HNS_SALTY); HU; BH2; HD; NS; pleiotropic regulator; global DNA-binding transcriptional dual regulator H-NS 1858385 hns 588858002217 hns Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S global DNA-binding transcriptional dual regulator H-NS YP_005237678.1 1857972 D 588858 CDS YP_005237679.1 378450320 1858398..1858580 1 NC_016856.1 hypothetical protein 1858580 588858002218 STM14_2117 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237679.1 1858398 D 588858 CDS YP_005237680.1 378450321 complement(1858517..1859425) 1 NC_016856.1 together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP--glucose-1-phosphate uridylyltransferase subunit GalU 1859425 galU 588858002219 galU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UTP--glucose-1-phosphate uridylyltransferase subunit GalU YP_005237680.1 1858517 R 588858 CDS YP_005237681.1 378450322 complement(1859628..1860641) 1 NC_016856.1 similar to Escherichia coli Hnr protein (AAC74317.1); for protein turnover; involved in mouse virulence; response regulator of RpoS 1860641 hnr 588858002220 hnr Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S response regulator of RpoS YP_005237681.1 1859628 R 588858 CDS YP_005237682.1 378450323 complement(1860732..1861637) 1 NC_016856.1 hypothetical protein 1861637 ychK 588858002221 ychK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237682.1 1860732 R 588858 CDS YP_005237683.1 378450324 1861748..1862206 1 NC_016856.1 hypothetical protein 1862206 ychJ 588858002222 ychJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237683.1 1861748 D 588858 CDS YP_005237684.1 378450325 1862257..1863099 1 NC_016856.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1863099 purU 588858002223 purU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S formyltetrahydrofolate deformylase YP_005237684.1 1862257 D 588858 CDS YP_005237685.1 378450326 complement(1863160..1863279) 1 NC_016856.1 hypothetical protein 1863279 588858002224 STM14_2123 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237685.1 1863160 R 588858 CDS YP_005237686.1 378450327 complement(1864415..1865944) 1 NC_016856.1 contains TPR repeats; hypothetical protein 1865944 588858002228 STM14_2127 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237686.1 1864415 R 588858 CDS YP_005237687.1 378450328 1865980..1866144 1 NC_016856.1 hypothetical protein 1866144 588858002229 STM14_2128 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237687.1 1865980 D 588858 CDS YP_005237688.1 378450329 complement(1866186..1866863) 1 NC_016856.1 similar to Escherichia coli nitrate reductase 1; cytochrome b(NR); gamma subunit (AAC74311.1); nitrate reductase 1 subunit gamma 1866863 narI 588858002230 narI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrate reductase 1 subunit gamma YP_005237688.1 1866186 R 588858 CDS YP_005237689.1 378450330 complement(1866863..1867573) 1 NC_016856.1 similar to Escherichia coli nitrate reductase 1; delta subunit; assembly function (AAC74310.1); chaperone required for molybdenum cofactor assembly in nitrate reductase 1; nitrate reductase 1 subunit delta 1867573 narJ 588858002231 narJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrate reductase 1 subunit delta YP_005237689.1 1866863 R 588858 CDS YP_005237690.1 378450331 complement(1867570..1869105) 1 NC_016856.1 similar to Escherichia coli nitrate reductase 1; FeS; beta subunit (AAC74309.1); nitrate reductase 1 subunit beta 1869105 narH 588858002232 narH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrate reductase 1 subunit beta YP_005237690.1 1867570 R 588858 CDS YP_005237691.1 378450332 complement(1869102..1872845) 1 NC_016856.1 similar to Escherichia coli nitrate reductase 1; alpha subunit (AAC74308.1); nitrate reductase 1 subunit alpha 1872845 narG 588858002233 narG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrate reductase 1 subunit alpha YP_005237691.1 1869102 R 588858 CDS YP_005237692.1 378450333 1872924..1873043 1 NC_016856.1 hypothetical protein 1873043 588858002234 STM14_2133 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237692.1 1872924 D 588858 CDS YP_005237693.1 378450334 complement(1873233..1874630) 1 NC_016856.1 similar to Escherichia coli nitrite extrusion protein (AAC74307.1); MFS superfamily; nitrite extrusion protein 1874630 narK 588858002235 narK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrite extrusion protein YP_005237693.1 1873233 R 588858 CDS YP_005237694.1 378450335 complement(1874718..1874903) 1 NC_016856.1 hypothetical protein 1874903 588858002236 STM14_2135 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237694.1 1874718 R 588858 CDS YP_005237695.1 378450336 1874971..1876767 1 NC_016856.1 similar to Escherichia coli nitrate/nitrate sensor histidine protein kinase acts on NarL regulator (AAC74306.1); in two component regulatory system; senses nitrate/nitrite; regulates anaerobic respiration and fermentation; nitrate/nitrite sensor protein NarX 1876767 narX 588858002237 narX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrate/nitrite sensor protein NarX YP_005237695.1 1874971 D 588858 CDS YP_005237696.1 378450337 1876760..1877410 1 NC_016856.1 two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; transcriptional regulator NarL 1877410 narL 588858002238 narL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator NarL YP_005237696.1 1876760 D 588858 CDS YP_005237697.1 378450338 complement(1877411..1878835) 1 NC_016856.1 similar to Escherichia coli putative factor (AAC74304.1); hypothetical protein 1878835 ychP 588858002239 ychP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237697.1 1877411 R 588858 CDS YP_005237698.1 378450339 1879012..1879365 1 NC_016856.1 putative ACR involved in intracellular sulfur reduction; putative sulfur reduction protein 1879365 ychN 588858002240 ychN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sulfur reduction protein YP_005237698.1 1879012 D 588858 CDS YP_005237699.1 378450340 complement(1879445..1879675) 1 NC_016856.1 in Escherichia coli this protein putatively regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; cation transport regulator 1879675 chaB 588858002241 chaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cation transport regulator YP_005237699.1 1879445 R 588858 CDS YP_005237700.1 378450341 1879942..1881042 1 NC_016856.1 similar to Escherichia coli sodium-calcium/proton antiporter (AAC74300.1); CaCA family; calcium/sodium:proton antiporter 1881042 chaA 588858002242 chaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S calcium/sodium:proton antiporter YP_005237700.1 1879942 D 588858 CDS YP_005237701.1 378450342 complement(1881096..1881950) 1 NC_016856.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1881950 kdsA 588858002243 kdsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-dehydro-3-deoxyphosphooctonate aldolase YP_005237701.1 1881096 R 588858 CDS YP_005237702.1 378450343 complement(1881988..1882797) 1 NC_016856.1 putative transcriptional regulator 1882797 ychA 588858002244 ychA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005237702.1 1881988 R 588858 CDS YP_005237703.1 378450344 complement(1882801..1883190) 1 NC_016856.1 regulation of invasion genes; (gi|4887121); putative transcriptional regulator 1883190 sirC 588858002245 sirC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005237703.1 1882801 R 588858 CDS YP_005237704.1 378450345 complement(1883187..1884020) 1 NC_016856.1 HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1884020 hemK 588858002246 hemK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_005237704.1 1883187 R 588858 CDS YP_005237705.1 378450346 complement(1884020..1885102) 1 NC_016856.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1885102 prfA 588858002247 prfA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptide chain release factor 1 YP_005237705.1 1884020 R 588858 CDS YP_005237706.1 378450347 complement(1885143..1886399) 1 NC_016856.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1886399 hemA 588858002248 hemA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamyl-tRNA reductase YP_005237706.1 1885143 R 588858 CDS YP_005237707.1 378450348 complement(1886567..1886695) 1 NC_016856.1 hypothetical protein 1886695 588858002249 STM14_2148 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237707.1 1886567 R 588858 CDS YP_005237708.1 378450349 1886713..1887336 1 NC_016856.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 1887336 lolB 588858002250 lolB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane lipoprotein LolB YP_005237708.1 1886713 D 588858 CDS YP_005237709.1 378450350 1887333..1888184 1 NC_016856.1 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the mevalonate-independent pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1888184 ipk 588858002251 ipk Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_005237709.1 1887333 D 588858 CDS YP_005237710.1 378450351 complement(1888181..1888351) 1 NC_016856.1 hypothetical protein 1888351 588858002252 STM14_2151 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237710.1 1888181 R 588858 CDS YP_005237711.1 378450352 complement(1888329..1888433) 1 NC_016856.1 hypothetical protein 1888433 588858002253 STM14_2152 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237711.1 1888329 R 588858 CDS YP_005237712.1 378450353 1888450..1889397 1 NC_016856.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1889397 prsA 588858002254 prsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribose-phosphate pyrophosphokinase YP_005237712.1 1888450 D 588858 CDS YP_005237713.2 410023188 1889522..1891207 1 NC_016856.1 putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM 1891207 ychM 588858002255 ychM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sulfate transporter YchM YP_005237713.2 1889522 D 588858 CDS YP_005237714.1 378450355 complement(1891252..1891530) 1 NC_016856.1 YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function; hypothetical protein 1891530 ychH 588858002256 ychH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237714.1 1891252 R 588858 CDS YP_005237715.1 378450356 1891806..1892390 1 NC_016856.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1892390 pth 588858002257 pth Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptidyl-tRNA hydrolase YP_005237715.1 1891806 D 588858 CDS YP_005237716.1 378450357 1892507..1893598 1 NC_016856.1 the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; translation-associated GTPase 1893598 ychF 588858002258 ychF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S translation-associated GTPase YP_005237716.1 1892507 D 588858 CDS YP_005237717.1 378450358 complement(1893588..1893701) 1 NC_016856.1 hypothetical protein 1893701 588858002259 STM14_2158 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237717.1 1893588 R 588858 CDS YP_005237718.1 378450359 complement(1893757..1895022) 1 NC_016856.1 putative cytoplasmic protein 1895022 588858002260 STM14_2159 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237718.1 1893757 R 588858 CDS YP_005237719.1 378450360 complement(1895293..1895421) 1 NC_016856.1 hypothetical protein 1895421 588858002261 STM14_2160 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237719.1 1895293 R 588858 CDS YP_005237720.1 378450361 1895517..1896635 1 NC_016856.1 similar to Escherichia coli hydrogenase-1 small subunit (AAC74057.1); hydrogenase-1 small subunit 1896635 588858002262 STM14_2161 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase-1 small subunit YP_005237720.1 1895517 D 588858 CDS YP_005237721.1 378450362 1896632..1898425 1 NC_016856.1 involved in hydrogen cycling during fermentative growth; hydrogenase 1 large subunit 1898425 588858002263 STM14_2162 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase 1 large subunit YP_005237721.1 1896632 D 588858 CDS YP_005237722.1 378450363 1898444..1899175 1 NC_016856.1 similar to Escherichia coli probable Ni/Fe hydrogenase 1 b-type cytochrome subunit (AAC74059.1); hydrogenase 1 b-type cytochrome subunit 1899175 588858002264 STM14_2163 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase 1 b-type cytochrome subunit YP_005237722.1 1898444 D 588858 CDS YP_005237723.1 378450364 1899172..1899768 1 NC_016856.1 HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); hydrogenase 1 maturation protease 1899768 588858002265 STM14_2164 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase 1 maturation protease YP_005237723.1 1899172 D 588858 CDS YP_005237724.1 378450365 1899758..1900162 1 NC_016856.1 involved in processing hydrogenase proteins HyaA and HyaB; hydrogenase-1 operon protein HyaE 1900162 588858002266 STM14_2165 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase-1 operon protein HyaE YP_005237724.1 1899758 D 588858 CDS YP_005237725.1 378450366 1900159..1901007 1 NC_016856.1 similar to Escherichia coli nickel incorporation into hydrogenase-1 proteins (AAC74062.1); putative hydrogenase-1 protein 1901007 588858002267 STM14_2166 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrogenase-1 protein YP_005237725.1 1900159 D 588858 CDS YP_005237726.1 378450367 1901082..1902626 1 NC_016856.1 similar to Escherichia coli probable third cytochrome oxidase subunit I (AAC74063.1); putative cytochrome oxidase subunit I 1902626 588858002268 STM14_2167 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytochrome oxidase subunit I YP_005237726.1 1901082 D 588858 CDS YP_005237727.1 378450368 1902638..1903774 1 NC_016856.1 similar to Escherichia coli probable third cytochrome oxidase subunit II (AAC74064.1); putative cytochrome oxidase subunit II 1903774 588858002269 STM14_2168 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytochrome oxidase subunit II YP_005237727.1 1902638 D 588858 CDS YP_005237728.1 378450369 1903787..1903876 1 NC_016856.1 hypothetical protein 1903876 588858002270 STM14_2169 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237728.1 1903787 D 588858 CDS YP_005237729.1 378450370 1904220..1905545 1 NC_016856.1 similar to Escherichia coli NADP-specific glutamate dehydrogenase (AAC74831.1); glutamate dehydrogenase-like protein 1905545 588858002271 STM14_2170 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamate dehydrogenase-like protein YP_005237729.1 1904220 D 588858 CDS YP_005237730.1 378450371 complement(1905555..1905662) 1 NC_016856.1 hypothetical protein 1905662 588858002272 STM14_2171 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237730.1 1905555 R 588858 CDS YP_005237731.1 378450372 1905759..1907471 1 NC_016856.1 periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; trehalase 1907471 treA 588858002273 treA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S trehalase YP_005237731.1 1905759 D 588858 CDS YP_005237732.1 378450373 complement(1907534..1907788) 1 NC_016856.1 putative transglycosylase-associated protein 1907788 ymgE 588858002274 ymgE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transglycosylase-associated protein YP_005237732.1 1907534 R 588858 CDS YP_005237733.1 378450374 1907957..1908691 1 NC_016856.1 putative inner membrane protein 1908691 ycgR 588858002275 ycgR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237733.1 1907957 D 588858 CDS YP_005237734.1 378450375 complement(1908705..1909316) 1 NC_016856.1 similar to Escherichia coli murein transglycosylase E (AAC74277.1); membrane-bound lytic murein transglycosylase E 1909316 emtA 588858002276 emtA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S membrane-bound lytic murein transglycosylase E YP_005237734.1 1908705 R 588858 CDS YP_005237735.1 378450376 1909487..1910401 1 NC_016856.1 catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; L,D-carboxypeptidase A 1910401 ldcA 588858002277 ldcA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L,D-carboxypeptidase A YP_005237735.1 1909487 D 588858 CDS YP_005237736.1 378450377 1910498..1912231 1 NC_016856.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 1912231 ycgO 588858002278 ycgO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S potassium/proton antiporter YP_005237736.1 1910498 D 588858 CDS YP_005237737.1 378450378 complement(1912294..1913364) 1 NC_016856.1 catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase 1913364 dadX 588858002279 dadX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S alanine racemase YP_005237737.1 1912294 R 588858 CDS YP_005237738.1 378450379 complement(1913378..1914676) 1 NC_016856.1 catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 1914676 dadA 588858002280 dadA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-amino acid dehydrogenase small subunit YP_005237738.1 1913378 R 588858 CDS YP_005237739.1 378450380 complement(1914824..1914934) 1 NC_016856.1 hypothetical protein 1914934 588858002281 STM14_2180 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237739.1 1914824 R 588858 CDS YP_005237740.1 378450381 1915005..1916531 1 NC_016856.1 similar to Escherichia coli putative sporulation protein (AAC74272.1); hypothetical protein 1916531 ycgB 588858002282 ycgB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237740.1 1915005 D 588858 CDS YP_005237741.1 378450382 complement(1916578..1917297) 1 NC_016856.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 1917297 fadR 588858002283 fadR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fatty acid metabolism regulator YP_005237741.1 1916578 R 588858 CDS YP_005237742.1 378450383 1917517..1919061 1 NC_016856.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 1919061 nhaB 588858002284 nhaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sodium/proton antiporter YP_005237742.1 1917517 D 588858 CDS YP_005237743.1 378450384 1919203..1919733 1 NC_016856.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 1919733 dsbB 588858002285 dsbB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S disulfide bond formation protein B YP_005237743.1 1919203 D 588858 CDS YP_005237744.1 378450385 1919842..1920183 1 NC_016856.1 putative cytoplasmic protein 1920183 588858002286 STM14_2185 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237744.1 1919842 D 588858 CDS YP_005237745.1 378450386 complement(1920255..1920428) 1 NC_016856.1 putative cytoplasmic protein 1920428 588858002287 STM14_2186 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237745.1 1920255 R 588858 CDS YP_005237746.1 378450387 1920441..1920557 1 NC_016856.1 hypothetical protein 1920557 588858002288 STM14_2187 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237746.1 1920441 D 588858 CDS YP_005237747.1 378450388 complement(1920620..1920757) 1 NC_016856.1 putative cytoplasmic protein 1920757 588858002289 STM14_2188 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237747.1 1920620 R 588858 CDS YP_005237748.1 378450389 complement(1920801..1920899) 1 NC_016856.1 hypothetical protein 1920899 588858002290 STM14_2189 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237748.1 1920801 R 588858 CDS YP_005237749.1 378450390 complement(1921109..1921555) 1 NC_016856.1 hypothetical protein 1921555 ycgN 588858002291 ycgN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237749.1 1921109 R 588858 CDS YP_005237750.1 378450391 complement(1921648..1922307) 1 NC_016856.1 similar to Escherichia coli putative isomerase (AAC74264.1); FAA; hypothetical protein 1922307 ycgM 588858002292 ycgM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237750.1 1921648 R 588858 CDS YP_005237751.1 378450392 complement(1922357..1922689) 1 NC_016856.1 putative cytoplasmic protein 1922689 ycgL 588858002293 ycgL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237751.1 1922357 R 588858 CDS YP_005237752.1 378450393 1922776..1923483 1 NC_016856.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 1923483 minC 588858002294 minC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S septum formation inhibitor YP_005237752.1 1922776 D 588858 CDS YP_005237753.1 378450394 1923507..1924319 1 NC_016856.1 ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; cell division inhibitor MinD 1924319 minD 588858002295 minD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell division inhibitor MinD YP_005237753.1 1923507 D 588858 CDS YP_005237754.1 378450395 1924323..1924589 1 NC_016856.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1924589 minE 588858002296 minE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell division topological specificity factor MinE YP_005237754.1 1924323 D 588858 CDS YP_005237755.1 378450396 complement(1924711..1925838) 1 NC_016856.1 similar to Escherichia coli RNase D; processes tRNA precursor (AAC74874.1); ribonuclease D 1925838 rnd 588858002297 rnd Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonuclease D YP_005237755.1 1924711 R 588858 CDS YP_005237756.1 378450397 complement(1925975..1926433) 1 NC_016856.1 transposase for insertion sequence element IS200 (SW:T200_SALTY); transposase 1926433 tnpA_6 588858002298 tnpA_6 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transposase YP_005237756.1 1925975 R 588858 CDS YP_005237757.1 378450398 complement(1926390..1926578) 1 NC_016856.1 hypothetical protein 1926578 588858002299 STM14_2198 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237757.1 1926390 R 588858 CDS YP_005237758.1 378450399 complement(1926624..1928309) 1 NC_016856.1 Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1928309 fadD 588858002300 fadD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S long-chain-fatty-acid--CoA ligase YP_005237758.1 1926624 R 588858 CDS YP_005237759.1 378450400 1928329..1928535 1 NC_016856.1 hypothetical protein 1928535 588858002301 STM14_2200 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237759.1 1928329 D 588858 CDS YP_005237760.1 378450401 complement(1928514..1929095) 1 NC_016856.1 similar to Escherichia coli putative outer membrane protein (AAC74876.1); putative outer membrane protein 1929095 slp 588858002302 slp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005237760.1 1928514 R 588858 CDS YP_005237761.1 378450402 complement(1929167..1929862) 1 NC_016856.1 putative molecular chaperone 1929862 yeaZ 588858002303 yeaZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative molecular chaperone YP_005237761.1 1929167 R 588858 CDS YP_005237762.1 378450403 complement(1929920..1931830) 1 NC_016856.1 similar to Escherichia coli putative enzyme (AAC74878.1); putative DNA helicase 1931830 yoaA 588858002304 yoaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA helicase YP_005237762.1 1929920 R 588858 CDS YP_005237763.1 378450404 1931961..1932305 1 NC_016856.1 putative translation initiation inhibitor 1932305 yoaB 588858002305 yoaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative translation initiation inhibitor YP_005237763.1 1931961 D 588858 CDS YP_005237764.1 378450405 complement(1932311..1932490) 1 NC_016856.1 hypothetical protein in fadD-pabB intergenic region (SW:YOAH_SALTY); hypothetical protein 1932490 yoaH 588858002306 yoaH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237764.1 1932311 R 588858 CDS YP_005237765.1 378450406 1932571..1933935 1 NC_016856.1 catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; para-aminobenzoate synthase component I 1933935 pabB 588858002307 pabB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S para-aminobenzoate synthase component I YP_005237765.1 1932571 D 588858 CDS YP_005237766.1 378450407 1933939..1934517 1 NC_016856.1 hypothetical protein in pabB-sdaA intergenic region (SW:YEAB_SALTY); hypothetical protein 1934517 yeaB 588858002308 yeaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237766.1 1933939 D 588858 CDS YP_005237767.1 378450408 1934781..1936145 1 NC_016856.1 similar to Escherichia coli L-serine deaminase (AAC74884.1); L-serine deaminase I/L-threonine deaminase I 1936145 sdaA 588858002309 sdaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-serine deaminase I/L-threonine deaminase I YP_005237767.1 1934781 D 588858 CDS YP_005237768.2 410023189 1936283..1937884 1 NC_016856.1 diguanylate cyclase 1937884 588858002310 STM14_2209 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S diguanylate cyclase YP_005237768.2 1936283 D 588858 CDS YP_005237769.1 378450410 complement(1937906..1939465) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC74886.1); putative inner membrane protein 1939465 yoaE 588858002311 yoaE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237769.1 1937906 R 588858 CDS YP_005237770.1 378450411 complement(1939453..1939788) 1 NC_016856.1 putative cytoplasmic protein 1939788 588858002312 STM14_2211 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237770.1 1939453 R 588858 CDS YP_005237771.1 378450412 1939938..1940906 1 NC_016856.1 similar to Escherichia coli PTS enzyme IIAB; mannose-specific (AAC74887.1); mannose-specific enzyme IIAB 1940906 manX 588858002313 manX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S mannose-specific enzyme IIAB YP_005237771.1 1939938 D 588858 CDS YP_005237772.1 378450413 1940959..1941759 1 NC_016856.1 similar to Escherichia coli PTS enzyme IIC; mannose-specific (AAC74888.1); mannose-specific enzyme IIC 1941759 manY 588858002314 manY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S mannose-specific enzyme IIC YP_005237772.1 1940959 D 588858 CDS YP_005237773.1 378450414 1941763..1942623 1 NC_016856.1 hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; mannose-specific PTS system protein IID 1942623 manZ 588858002315 manZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S mannose-specific PTS system protein IID YP_005237773.1 1941763 D 588858 CDS YP_005237774.1 378450415 1942681..1943139 1 NC_016856.1 hypothetical protein 1943139 588858002316 STM14_2215 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237774.1 1942681 D 588858 CDS YP_005237775.1 378450416 1943495..1944115 1 NC_016856.1 membrane protein YebN; hypothetical protein 1944115 yebN 588858002317 yebN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237775.1 1943495 D 588858 CDS YP_005237776.1 378450417 complement(1944112..1944921) 1 NC_016856.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A 1944921 rrmA 588858002318 rrmA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 23S rRNA methyltransferase A YP_005237776.1 1944112 R 588858 CDS YP_005237777.1 378450418 complement(1944987..1946732) 1 NC_016856.1 similar to Escherichia coli septum formation; penicillin-binding protein 3; peptidoglycan synthetase (AAC73195.1); putative penicillin-binding protein 3 1946732 588858002319 STM14_2218 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative penicillin-binding protein 3 YP_005237777.1 1944987 R 588858 CDS YP_005237778.1 378450419 complement(1946749..1946859) 1 NC_016856.1 hypothetical protein 1946859 588858002320 STM14_2219 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237778.1 1946749 R 588858 CDS YP_005237779.1 378450420 complement(1946952..1947161) 1 NC_016856.1 cold shock-like protein CspC (SW:CSPC_SALTY); multicopy suppresses mukB mutants; putative regulator; cold shock-like protein CspC 1947161 cspC 588858002321 cspC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cold shock-like protein CspC YP_005237779.1 1946952 R 588858 CDS YP_005237780.1 378450421 complement(1947174..1947317) 1 NC_016856.1 putative cytoplasmic protein 1947317 yobF 588858002322 yobF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237780.1 1947174 R 588858 CDS YP_005237781.1 378450422 1947434..1947541 1 NC_016856.1 hypothetical protein 1947541 588858002323 STM14_2222 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237781.1 1947434 D 588858 CDS YP_005237782.1 378450423 1947556..1947696 1 NC_016856.1 hypothetical protein 1947696 588858002324 STM14_2223 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237782.1 1947556 D 588858 CDS YP_005237783.1 378450424 complement(1947624..1947740) 1 NC_016856.1 hypothetical protein 1947740 588858002325 STM14_2224 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237783.1 1947624 R 588858 CDS YP_005237784.1 378450425 complement(1947966..1948253) 1 NC_016856.1 putative periplasmic protein; hypothetical protein 1948253 588858002326 STM14_2225 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237784.1 1947966 R 588858 CDS YP_005237785.1 378450426 complement(1948324..1948467) 1 NC_016856.1 hypothetical protein 1948467 yobG 588858002327 yobG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237785.1 1948324 R 588858 CDS YP_005237786.1 378450427 1948625..1948864 1 NC_016856.1 hypothetical protein 1948864 588858002328 STM14_2227 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237786.1 1948625 D 588858 CDS YP_005237787.1 378450428 complement(1949076..1949867) 1 NC_016856.1 similar to Escherichia coli putative regulator (AAC74897.1); IclR family; putative transcriptional repressor 1949867 kdgR 588858002329 kdgR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional repressor YP_005237787.1 1949076 R 588858 CDS YP_005237788.1 378450429 complement(1949871..1949978) 1 NC_016856.1 hypothetical protein 1949978 588858002330 STM14_2229 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237788.1 1949871 R 588858 CDS YP_005237789.1 378450430 1950043..1951416 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC74898.1); putative transport protein 1951416 588858002331 STM14_2230 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005237789.1 1950043 D 588858 CDS YP_005237790.1 378450431 complement(1951464..1952345) 1 NC_016856.1 putative metalloprotease; heat shock protein HtpX 1952345 htpX 588858002332 htpX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S heat shock protein HtpX YP_005237790.1 1951464 R 588858 CDS YP_005237791.1 378450432 complement(1952539..1954587) 1 NC_016856.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 1954587 prc 588858002333 prc Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S carboxy-terminal protease YP_005237791.1 1952539 R 588858 CDS YP_005237792.1 378450433 complement(1954607..1955293) 1 NC_016856.1 affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector 1955293 proQ 588858002334 proQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative solute/DNA competence effector YP_005237792.1 1954607 R 588858 CDS YP_005237793.1 378450434 complement(1955391..1955975) 1 NC_016856.1 contains putative GAF domain; putative nucleotide-binding protein 1955975 yebR 588858002335 yebR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative nucleotide-binding protein YP_005237793.1 1955391 R 588858 CDS YP_005237794.1 378450435 1956017..1957300 1 NC_016856.1 putative inner membrane protein 1957300 yebS 588858002336 yebS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237794.1 1956017 D 588858 CDS YP_005237795.1 378450436 1957263..1959902 1 NC_016856.1 putative inner membrane protein 1959902 588858002337 STM14_2236 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237795.1 1957263 D 588858 CDS YP_005237796.1 378450437 1959980..1961419 1 NC_016856.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 1961419 yebU 588858002338 yebU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S rRNA (cytosine-C(5)-)-methyltransferase RsmF YP_005237796.1 1959980 D 588858 CDS YP_005237797.1 378450438 1961391..1961522 1 NC_016856.1 hypothetical protein 1961522 588858002339 STM14_2238 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237797.1 1961391 D 588858 CDS YP_005237798.1 378450439 1961534..1961773 1 NC_016856.1 putative cytoplasmic protein 1961773 588858002340 STM14_2239 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237798.1 1961534 D 588858 CDS YP_005237799.1 378450440 1961884..1962075 1 NC_016856.1 putative inner membrane lipoprotein 1962075 yebW 588858002341 yebW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane lipoprotein YP_005237799.1 1961884 D 588858 CDS YP_005237800.1 378450441 complement(1962094..1962762) 1 NC_016856.1 Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins; serine/threonine protein phosphatase 1 1962762 pphA 588858002342 pphA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S serine/threonine protein phosphatase 1 YP_005237800.1 1962094 R 588858 CDS YP_005237801.1 378450442 complement(1962968..1963132) 1 NC_016856.1 putative inner membrane protein 1963132 588858002343 STM14_2242 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237801.1 1962968 R 588858 CDS YP_005237802.1 378450443 1963183..1963311 1 NC_016856.1 hypothetical protein 1963311 588858002344 STM14_2243 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237802.1 1963183 D 588858 CDS YP_005237803.1 378450444 complement(1963417..1964139) 1 NC_016856.1 SopE2 (gi|9651642); invasion-associated protein; secreted by SPI-1; interacts with chaperone InvB; guanine nucleotide exchange factor for Cdc42; activates Cdc42 which results in actin cytoskeleton rearrangements and internalization; type III-secreted effector protein 1964139 sopE2 588858002345 sopE2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S type III-secreted effector protein YP_005237803.1 1963417 R 588858 CDS YP_005237804.1 378450445 1964429..1964551 1 NC_016856.1 hypothetical protein 1964551 588858002346 STM14_2245 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237804.1 1964429 D 588858 CDS YP_005237805.1 378450446 complement(1964644..1964787) 1 NC_016856.1 hypothetical protein 1964787 588858002347 STM14_2246 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237805.1 1964644 R 588858 CDS YP_005237806.1 378450447 1964823..1965218 1 NC_016856.1 putative cytoplasmic protein 1965218 588858002348 STM14_2247 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237806.1 1964823 D 588858 CDS YP_005237807.1 378450448 1965548..1966024 1 NC_016856.1 hypothetical protein 1966024 588858002349 STM14_2248 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237807.1 1965548 D 588858 CDS YP_005237808.1 378450449 complement(1966412..1966831) 1 NC_016856.1 putative acetyltransferase 1966831 588858002350 STM14_2249 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative acetyltransferase YP_005237808.1 1966412 R 588858 CDS YP_005237809.1 378450450 complement(1966960..1967154) 1 NC_016856.1 hypothetical protein 1967154 588858002351 STM14_2250 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237809.1 1966960 R 588858 CDS YP_005237810.1 378450451 1967201..1967470 1 NC_016856.1 putative cytoplasmic protein 1967470 588858002352 STM14_2251 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237810.1 1967201 D 588858 CDS YP_005237811.1 378450452 1967603..1967776 1 NC_016856.1 putative cytoplasmic protein 1967776 588858002353 STM14_2252 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237811.1 1967603 D 588858 CDS YP_006894091.1 410023227 complement(1968259..1969116) 1 NC_016856.1 hypothetical protein 1969116 588858002354 STM14_06230 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_006894091.1 1968259 R 588858 CDS YP_006894092.1 410023228 1969279..1969608 1 NC_016856.1 hypothetical protein 1969608 588858002355 STM14_2254 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_006894092.1 1969279 D 588858 CDS YP_005237812.1 378450453 complement(1970094..1970294) 1 NC_016856.1 hypothetical protein 1970294 588858002356 STM14_2255 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237812.1 1970094 R 588858 CDS YP_005237813.1 378450454 1970912..1971826 1 NC_016856.1 PagO protein (SW:PAGO_SALTY); PhoPQ-activated gene; integral membrane protein 1971826 pagO 588858002357 pagO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S integral membrane protein YP_005237813.1 1970912 D 588858 CDS YP_005237814.1 378450455 1971959..1972117 1 NC_016856.1 putative inner membrane protein 1972117 588858002358 STM14_2257 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237814.1 1971959 D 588858 CDS YP_005237815.1 378450456 1972127..1972741 1 NC_016856.1 putative inner membrane protein 1972741 588858002359 STM14_2258 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237815.1 1972127 D 588858 CDS YP_005237816.1 378450457 complement(1973190..1973366) 1 NC_016856.1 hypothetical protein 1973366 588858002361 STM14_2260 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237816.1 1973190 R 588858 CDS YP_005237817.1 378450458 1973229..1973375 1 NC_016856.1 hypothetical protein 1973375 588858002362 STM14_2261 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237817.1 1973229 D 588858 CDS YP_005237818.1 378450459 complement(1973981..1974151) 1 NC_016856.1 hypothetical protein 1974151 588858002364 STM14_2263 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237818.1 1973981 R 588858 CDS YP_005237819.1 378450460 1974277..1974393 1 NC_016856.1 tail fiber assembly protein 1974393 588858002365 STM14_2264 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tail fiber assembly protein YP_005237819.1 1974277 D 588858 CDS YP_005237820.1 378450461 1974584..1974784 1 NC_016856.1 PhoPQ-activated gene (gi|2582047); PagK 1974784 pagK 588858002366 pagK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S PagK YP_005237820.1 1974584 D 588858 CDS YP_005237821.1 378450462 complement(1974881..1975939) 1 NC_016856.1 phage side tail fiber assembly protein 1975939 mig-3 588858002367 mig-3 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage side tail fiber assembly protein YP_005237821.1 1974881 R 588858 CDS YP_005237822.1 378450463 complement(1975917..1976180) 1 NC_016856.1 hypothetical protein 1976180 588858002368 STM14_2267 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237822.1 1975917 R 588858 CDS YP_005237823.1 378450464 1976235..1976423 1 NC_016856.1 hypothetical protein 1976423 588858002369 STM14_2268 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237823.1 1976235 D 588858 CDS YP_005237824.1 378450465 1976488..1976655 1 NC_016856.1 lytic enzyme 1976655 588858002370 STM14_2269 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lytic enzyme YP_005237824.1 1976488 D 588858 CDS YP_005237825.1 378450466 1976705..1976878 1 NC_016856.1 hypothetical protein 1976878 588858002371 STM14_2270 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237825.1 1976705 D 588858 CDS YP_005237826.1 378450467 1976808..1976927 1 NC_016856.1 hypothetical protein 1976927 588858002372 STM14_2271 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237826.1 1976808 D 588858 CDS YP_005237827.1 378450468 complement(1976912..1977445) 1 NC_016856.1 phage-tail assembly-like protein 1977445 588858002373 STM14_2272 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage-tail assembly-like protein YP_005237827.1 1976912 R 588858 CDS YP_005237828.1 378450469 complement(1977499..1977786) 1 NC_016856.1 hypothetical protein 1977786 588858002374 STM14_2273 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237828.1 1977499 R 588858 CDS YP_005237829.1 378450470 1977760..1978413 1 NC_016856.1 exoVIII; similar to Escherichia coli exonuclease VIII; ds DNA exonuclease; 5'-3' specific (AAC74432.1); RecE-like protein 1978413 588858002375 STM14_2274 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S RecE-like protein YP_005237829.1 1977760 D 588858 CDS YP_006894093.1 410023229 1978431..1979327 1 NC_016856.1 integrase 1979327 588858002376 STM14_2275 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S integrase YP_006894093.1 1978431 D 588858 CDS YP_005237830.1 378450471 complement(1979312..1979440) 1 NC_016856.1 hypothetical protein 1979440 588858002377 STM14_2276 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237830.1 1979312 R 588858 CDS YP_005237831.1 378450472 complement(1979524..1979643) 1 NC_016856.1 putative cytoplasmic protein 1979643 588858002378 STM14_2277 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237831.1 1979524 R 588858 CDS YP_005237832.1 378450473 complement(1979701..1980054) 1 NC_016856.1 putative periplasmic protein; hypothetical protein 1980054 588858002379 STM14_2278 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237832.1 1979701 R 588858 CDS YP_005237833.1 378450474 complement(1980071..1980946) 1 NC_016856.1 similar to Escherichia coli putative resistance protein (AAC74910.1); putative inner membrane protein 1980946 588858002380 STM14_2279 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237833.1 1980071 R 588858 CDS YP_005237834.1 378450475 complement(1980947..1981321) 1 NC_016856.1 similar to CopC; hypothetical protein 1981321 yobA 588858002381 yobA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237834.1 1980947 R 588858 CDS YP_005237835.1 378450476 1981459..1981689 1 NC_016856.1 similar to Escherichia coli DNA polymerase III theta subunit (AAC74912.1); DNA polymerase III subunit theta 1981689 holE 588858002382 holE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA polymerase III subunit theta YP_005237835.1 1981459 D 588858 CDS YP_005237836.1 378450477 1981797..1982453 1 NC_016856.1 putative amidohydrolase 1982453 588858002383 STM14_2282 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative amidohydrolase YP_005237836.1 1981797 D 588858 CDS YP_005237837.1 378450478 1982477..1983175 1 NC_016856.1 3'-5' exonuclease activity on single or double-strand DNA; exodeoxyribonuclease X 1983175 exoX 588858002384 exoX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S exodeoxyribonuclease X YP_005237837.1 1982477 D 588858 CDS YP_005237838.1 378450479 complement(1983210..1985261) 1 NC_016856.1 PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; protease 2 1985261 ptrB 588858002385 ptrB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S protease 2 YP_005237838.1 1983210 R 588858 CDS YP_005237839.1 378450480 complement(1985474..1986133) 1 NC_016856.1 putative inner membrane protein 1986133 yebE 588858002386 yebE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237839.1 1985474 R 588858 CDS YP_005237840.1 378450481 complement(1986227..1986580) 1 NC_016856.1 secreted protein; unknown function; hypothetical protein 1986580 yebF 588858002387 yebF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237840.1 1986227 R 588858 CDS YP_005237841.1 378450482 complement(1986648..1986938) 1 NC_016856.1 in SOS regulon; dependent on cyclic AMP and H-NS; DNA damage-inducible protein YebG 1986938 yebG 588858002388 yebG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA damage-inducible protein YebG YP_005237841.1 1986648 R 588858 CDS YP_005237842.1 378450483 1987069..1988247 1 NC_016856.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1988247 purT 588858002389 purT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoribosylglycinamide formyltransferase 2 YP_005237842.1 1987069 D 588858 CDS YP_005237843.1 378450484 complement(1988347..1988988) 1 NC_016856.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1988988 eda 588858002390 eda Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_005237843.1 1988347 R 588858 CDS YP_005237844.1 378450485 complement(1989026..1990837) 1 NC_016856.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1990837 edd 588858002391 edd Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphogluconate dehydratase YP_005237844.1 1989026 R 588858 CDS YP_005237845.1 378450486 complement(1990827..1990985) 1 NC_016856.1 hypothetical protein 1990985 588858002392 STM14_2291 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237845.1 1990827 R 588858 CDS YP_005237846.1 378450487 complement(1991072..1992547) 1 NC_016856.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1992547 zwf 588858002393 zwf Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucose-6-phosphate 1-dehydrogenase YP_005237846.1 1991072 R 588858 CDS YP_005237847.1 378450488 1992662..1992787 1 NC_016856.1 hypothetical protein 1992787 588858002394 STM14_2293 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237847.1 1992662 D 588858 CDS YP_005237848.1 378450489 complement(1992755..1992874) 1 NC_016856.1 hypothetical protein 1992874 588858002395 STM14_2294 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237848.1 1992755 R 588858 CDS YP_005237849.1 378450490 1992889..1993758 1 NC_016856.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 1993758 yebK 588858002396 yebK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator HexR YP_005237849.1 1992889 D 588858 CDS YP_005237850.1 378450491 1993882..1995324 1 NC_016856.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1995324 pykA 588858002397 pykA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyruvate kinase YP_005237850.1 1993882 D 588858 CDS YP_005237851.1 378450492 complement(1995397..1996368) 1 NC_016856.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 1996368 msbB 588858002398 msbB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_005237851.1 1995397 R 588858 CDS YP_005237852.1 378450493 1996367..1996594 1 NC_016856.1 hypothetical protein 1996594 588858002399 STM14_2298 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237852.1 1996367 D 588858 CDS YP_005237853.1 378450494 complement(1996485..1997804) 1 NC_016856.1 hypothetical protein 1997804 yebA 588858002400 yebA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237853.1 1996485 R 588858 CDS YP_005237854.1 378450495 complement(1997820..1998764) 1 NC_016856.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic protein 1998764 znuA 588858002401 znuA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S high-affinity zinc transporter periplasmic protein YP_005237854.1 1997820 R 588858 CDS YP_005237855.1 378450496 1998843..1999598 1 NC_016856.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter ATPase 1999598 znuC 588858002402 znuC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S high-affinity zinc transporter ATPase YP_005237855.1 1998843 D 588858 CDS YP_005237856.1 378450497 1999595..2000380 1 NC_016856.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter membrane protein 2000380 znuB 588858002403 znuB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S high-affinity zinc transporter membrane protein YP_005237856.1 1999595 D 588858 CDS YP_005237857.1 378450498 complement(2000459..2001469) 1 NC_016856.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA duringbranch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase B 2001469 ruvB 588858002404 ruvB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Holliday junction DNA helicase B YP_005237857.1 2000459 R 588858 CDS YP_005237858.1 378450499 complement(2001478..2002089) 1 NC_016856.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase motor protein 2002089 ruvA 588858002405 ruvA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Holliday junction DNA helicase motor protein YP_005237858.1 2001478 R 588858 CDS YP_005237859.1 378450500 2002147..2002269 1 NC_016856.1 hypothetical protein 2002269 588858002406 STM14_2305 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237859.1 2002147 D 588858 CDS YP_005237860.1 378450501 complement(2002264..2002389) 1 NC_016856.1 hypothetical protein 2002389 588858002407 STM14_2306 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237860.1 2002264 R 588858 CDS YP_005237861.1 378450502 2004031..2004630 1 NC_016856.1 hypothetical protein 2004630 yebB 588858002409 yebB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237861.1 2004031 D 588858 CDS YP_005237862.1 378450503 complement(2004632..2005153) 1 NC_016856.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2005153 ruvC 588858002410 ruvC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Holliday junction resolvase YP_005237862.1 2004632 R 588858 CDS YP_005237863.1 378450504 complement(2005190..2005930) 1 NC_016856.1 hypothetical protein 2005930 yebC 588858002411 yebC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237863.1 2005190 R 588858 CDS YP_005237864.1 378450505 complement(2005960..2006412) 1 NC_016856.1 converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase 2006412 ntpA 588858002412 ntpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dATP pyrophosphohydrolase YP_005237864.1 2005960 R 588858 CDS YP_005237865.1 378450506 complement(2006515..2008287) 1 NC_016856.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2008287 aspS 588858002413 aspS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aspartyl-tRNA synthetase YP_005237865.1 2006515 R 588858 CDS YP_005237866.1 378450507 2008446..2008562 1 NC_016856.1 hypothetical protein 2008562 588858002414 STM14_2313 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237866.1 2008446 D 588858 CDS YP_005237867.1 378450508 2008612..2009178 1 NC_016856.1 hypothetical protein 2009178 yecD 588858002415 yecD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237867.1 2008612 D 588858 CDS YP_005237868.1 378450509 2009175..2009993 1 NC_016856.1 hypothetical protein 2009993 yecE 588858002416 yecE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237868.1 2009175 D 588858 CDS YP_005237869.1 378450510 2010046..2010441 1 NC_016856.1 putative inner membrane protein 2010441 yecN 588858002417 yecN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237869.1 2010046 D 588858 CDS YP_005237870.1 378450511 2010482..2011225 1 NC_016856.1 putative SAM-dependent methyltransferase 2011225 yecO 588858002418 yecO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative SAM-dependent methyltransferase YP_005237870.1 2010482 D 588858 CDS YP_005237871.1 378450512 2011222..2012193 1 NC_016856.1 similar to Escherichia coli putative enzyme (AAC74941.1); hypothetical protein 2012193 yecP 588858002419 yecP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237871.1 2011222 D 588858 CDS YP_005237872.1 378450513 complement(2012429..2013175) 1 NC_016856.1 similar to Escherichia coli copper homeostasis protein (AAC74944.1); copper homeostasis protein CutC 2013175 cutC 588858002420 cutC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S copper homeostasis protein CutC YP_005237872.1 2012429 R 588858 CDS YP_005237873.1 378450514 complement(2013195..2013764) 1 NC_016856.1 hypothetical protein 2013764 yecM 588858002421 yecM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237873.1 2013195 R 588858 CDS YP_005237874.1 378450515 2013869..2013985 1 NC_016856.1 hypothetical protein 2013985 588858002422 STM14_2321 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237874.1 2013869 D 588858 CDS YP_005237875.1 378450516 2014001..2015734 1 NC_016856.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2015734 argS 588858002423 argS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S arginyl-tRNA synthetase YP_005237875.1 2014001 D 588858 CDS YP_005237876.1 378450517 2015793..2015897 1 NC_016856.1 hypothetical protein 2015897 588858002424 STM14_2323 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237876.1 2015793 D 588858 CDS YP_005237877.1 378450518 2015923..2017794 1 NC_016856.1 penicillin-binding protein 2; PBP-2 (SW:PBP2_SALTY); putative penicillin-binding protein 2017794 588858002425 STM14_2324 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative penicillin-binding protein YP_005237877.1 2015923 D 588858 CDS YP_005237878.1 378450519 complement(2017848..2018987) 1 NC_016856.1 putative cytoplasmic protein 2018987 588858002426 STM14_2325 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237878.1 2017848 R 588858 CDS YP_005237879.1 378450520 complement(2019224..2019616) 1 NC_016856.1 flagellar protein FlhE precursor (SW:FLHE_SALTY); flagellar protein 2019616 flhE 588858002427 flhE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar protein YP_005237879.1 2019224 R 588858 CDS YP_005237880.1 378450521 complement(2019616..2021694) 1 NC_016856.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 2021694 flhA 588858002428 flhA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar biosynthesis protein FlhA YP_005237880.1 2019616 R 588858 CDS YP_005237881.1 378450522 complement(2021687..2022838) 1 NC_016856.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 2022838 flhB 588858002429 flhB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar biosynthesis protein FlhB YP_005237881.1 2021687 R 588858 CDS YP_005237882.1 378450523 2022930..2023187 1 NC_016856.1 hypothetical protein 2023187 588858002430 STM14_2329 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237882.1 2022930 D 588858 CDS YP_005237883.1 378450524 complement(2023032..2023676) 1 NC_016856.1 cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ 2023676 cheZ 588858002431 cheZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chemotaxis regulator CheZ YP_005237883.1 2023032 R 588858 CDS YP_005237884.1 378450525 complement(2023687..2024076) 1 NC_016856.1 chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; chemotaxis regulatory protein CheY 2024076 cheY 588858002432 cheY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chemotaxis regulatory protein CheY YP_005237884.1 2023687 R 588858 CDS YP_005237885.1 378450526 complement(2024094..2025143) 1 NC_016856.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 2025143 cheB 588858002433 cheB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chemotaxis-specific methylesterase YP_005237885.1 2024094 R 588858 CDS YP_005237886.1 378450527 complement(2025140..2026006) 1 NC_016856.1 methylates the MCP; chemotaxis methyltransferase CheR 2026006 cheR 588858002434 cheR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chemotaxis methyltransferase CheR YP_005237886.1 2025140 R 588858 CDS YP_005237887.2 410023190 complement(2026160..2027821) 1 NC_016856.1 methyl-accepting chemotaxis protein II; MCP-II (SW:MCP2_SALTY); aspartate sensor-receptor; methyl accepting chemotaxis protein II 2027821 cheM 588858002435 cheM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S methyl accepting chemotaxis protein II YP_005237887.2 2026160 R 588858 CDS YP_005237888.1 378450529 complement(2028058..2028561) 1 NC_016856.1 chemotaxis protein CheW (SW:CHEW_SALTY); regulation; couples CheA histidine kinase to transducers; purine-binding chemotaxis protein 2028561 cheW 588858002436 cheW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S purine-binding chemotaxis protein YP_005237888.1 2028058 R 588858 CDS YP_005237889.1 378450530 complement(2028582..2030597) 1 NC_016856.1 chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component; chemotaxis protein CheA 2030597 cheA 588858002437 cheA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chemotaxis protein CheA YP_005237889.1 2028582 R 588858 CDS YP_005237890.1 378450531 complement(2030602..2031531) 1 NC_016856.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 2031531 motB 588858002438 motB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar motor protein MotB YP_005237890.1 2030602 R 588858 CDS YP_005237891.1 378450532 complement(2031528..2032415) 1 NC_016856.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 2032415 motA 588858002439 motA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar motor protein MotA YP_005237891.1 2031528 R 588858 CDS YP_005237892.1 378450533 complement(2032400..2032531) 1 NC_016856.1 hypothetical protein 2032531 588858002440 STM14_2339 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237892.1 2032400 R 588858 CDS YP_005237893.1 378450534 complement(2032540..2033118) 1 NC_016856.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 2033118 flhC 588858002441 flhC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional activator FlhC YP_005237893.1 2032540 R 588858 CDS YP_005237894.1 378450535 complement(2033121..2033471) 1 NC_016856.1 with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD 2033471 flhD 588858002442 flhD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional activator FlhD YP_005237894.1 2033121 R 588858 CDS YP_005237895.1 378450536 complement(2033684..2033827) 1 NC_016856.1 hypothetical protein 2033827 588858002443 STM14_2342 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237895.1 2033684 R 588858 CDS YP_005237896.1 378450537 2034145..2034261 1 NC_016856.1 hypothetical protein 2034261 588858002444 STM14_2343 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237896.1 2034145 D 588858 CDS YP_005237897.1 378450538 2034258..2034686 1 NC_016856.1 ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspC 2034686 yecG 588858002445 yecG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S universal stress protein UspC YP_005237897.1 2034258 D 588858 CDS YP_005237898.1 378450539 complement(2034704..2036125) 1 NC_016856.1 similar to Escherichia coli trehalose-6-phosphate synthase (AAC74966.1); trehalose-6-phosphate synthase 2036125 otsA 588858002446 otsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S trehalose-6-phosphate synthase YP_005237898.1 2034704 R 588858 CDS YP_005237899.2 410023191 complement(2036100..2036903) 1 NC_016856.1 biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature; trehalose-6-phosphate phosphatase 2036903 otsB 588858002447 otsB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S trehalose-6-phosphate phosphatase YP_005237899.2 2036100 R 588858 CDS YP_005237900.1 378450541 complement(2037537..2038094) 1 NC_016856.1 similar to Escherichia coli 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis (AAC73527.1); putative intracellular protease/amidase 2038094 araH 588858002449 araH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative intracellular protease/amidase YP_005237900.1 2037537 R 588858 CDS YP_005237901.1 378450542 2038156..2038305 1 NC_016856.1 hypothetical protein 2038305 588858002450 STM14_2349 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237901.1 2038156 D 588858 CDS YP_005237902.1 378450543 2038645..2039148 1 NC_016856.1 similar to Escherichia coli ferritin-like protein (AAC74972.1); ferritin-like protein 2039148 ftnB 588858002451 ftnB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ferritin-like protein YP_005237902.1 2038645 D 588858 CDS YP_005237903.1 378450544 complement(2039327..2039965) 1 NC_016856.1 hypothetical protein 2039965 588858002452 STM14_2351 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237903.1 2039327 R 588858 CDS YP_005237904.1 378450545 2040221..2040556 1 NC_016856.1 putative outer membrane lipoprotein 2040556 588858002453 STM14_2352 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005237904.1 2040221 D 588858 CDS YP_005237905.1 378450546 2040796..2041293 1 NC_016856.1 cytoplasmic iron storage protein; ferritin 2041293 ftn 588858002454 ftn Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ferritin YP_005237905.1 2040796 D 588858 CDS YP_005237906.1 378450547 complement(2041339..2041578) 1 NC_016856.1 putative cytoplasmic protein 2041578 yecH 588858002455 yecH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237906.1 2041339 R 588858 CDS YP_005237907.1 378450548 2041805..2043016 1 NC_016856.1 similar to Escherichia coli tyrosine-specific transport system (AAC74977.1); HAAAP family; tyrosine-specific transport protein 2043016 tyrP 588858002456 tyrP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tyrosine-specific transport protein YP_005237907.1 2041805 D 588858 CDS YP_005237908.1 378450549 complement(2043091..2043756) 1 NC_016856.1 similar to the C-terminal domain of SecA; hypothetical protein 2043756 yecA 588858002457 yecA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237908.1 2043091 R 588858 CDS YP_005237909.1 378450550 complement(2043994..2044320) 1 NC_016856.1 putative glucose-6-phosphate dehydrogenase 2044320 588858002458 STM14_2357 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glucose-6-phosphate dehydrogenase YP_005237909.1 2043994 R 588858 CDS YP_005237910.1 378450551 complement(2044533..2045972) 1 NC_016856.1 putative cell wall-associated hydrolase 2045972 588858002459 STM14_2358 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cell wall-associated hydrolase YP_005237910.1 2044533 R 588858 CDS YP_005237911.1 378450552 complement(2046185..2046517) 1 NC_016856.1 putative inner membrane protein 2046517 588858002460 STM14_2359 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237911.1 2046185 R 588858 CDS YP_005237912.1 378450553 complement(2047218..2047766) 1 NC_016856.1 similar to Escherichia coli phosphatidylglycerophosphate synthetase/CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase (AAC74979.1); phosphatidylglycerophosphate synthetase 2047766 pgsA 588858002464 pgsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphatidylglycerophosphate synthetase YP_005237912.1 2047218 R 588858 CDS YP_005237913.1 378450554 complement(2047823..2049655) 1 NC_016856.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2049655 uvrC 588858002465 uvrC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S excinuclease ABC subunit C YP_005237913.1 2047823 R 588858 CDS YP_005237914.1 378450555 complement(2049652..2050308) 1 NC_016856.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 2050308 uvrY 588858002466 uvrY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S response regulator YP_005237914.1 2049652 R 588858 CDS YP_005237915.1 378450556 2050620..2050775 1 NC_016856.1 putative inner membrane protein 2050775 588858002467 STM14_2366 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237915.1 2050620 D 588858 CDS YP_005237916.1 378450557 2050772..2050996 1 NC_016856.1 hypothetical protein 2050996 yecF 588858002468 yecF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237916.1 2050772 D 588858 CDS YP_005237917.1 378450558 complement(2051063..2051785) 1 NC_016856.1 regulates genes involved in cell division; DNA-binding transcriptional activator SdiA 2051785 sdiA 588858002469 sdiA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional activator SdiA YP_005237917.1 2051063 R 588858 CDS YP_005237918.1 378450559 complement(2052017..2052769) 1 NC_016856.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC74984.1); putative amino-acid ABC transporter ATP-binding protein YecC 2052769 yecC 588858002470 yecC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative amino-acid ABC transporter ATP-binding protein YecC YP_005237918.1 2052017 R 588858 CDS YP_005237919.1 378450560 complement(2052766..2053434) 1 NC_016856.1 similar to Escherichia coli putative transport system permease protein; formerly yecC (AAC74985.1); putative ABC-type amino acid transporter permease component 2053434 yecS 588858002471 yecS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type amino acid transporter permease component YP_005237919.1 2052766 R 588858 CDS YP_005237920.1 378450561 complement(2053455..2054441) 1 NC_016856.1 catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 2054441 yedO 588858002472 yedO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-cysteine desulfhydrase YP_005237920.1 2053455 R 588858 CDS YP_005237921.1 378450562 complement(2054595..2055395) 1 NC_016856.1 similar to Escherichia coli putative periplasmic binding transport protein (AAC74987.1); cystine transporter subunit 2055395 fliY 588858002473 fliY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cystine transporter subunit YP_005237921.1 2054595 R 588858 CDS YP_005237922.1 378450563 complement(2055542..2056093) 1 NC_016856.1 expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasion genes necessary to achieve full virulence; protein FliZ 2056093 fliZ 588858002474 fliZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S protein FliZ YP_005237922.1 2055542 R 588858 CDS YP_005237923.1 378450564 complement(2056152..2056871) 1 NC_016856.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 2056871 fliA 588858002475 fliA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar biosynthesis sigma factor YP_005237923.1 2056152 R 588858 CDS YP_005237924.1 378450565 complement(2057140..2057649) 1 NC_016856.1 transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 2057649 tnpA_7 588858002476 tnpA_7 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transposase for IS200 YP_005237924.1 2057140 R 588858 CDS YP_005237925.1 378450566 complement(2057555..2057743) 1 NC_016856.1 hypothetical protein 2057743 588858002477 STM14_2376 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237925.1 2057555 R 588858 CDS YP_005237926.1 378450567 complement(2057779..2058984) 1 NC_016856.1 N-methylation of lysine residues in flagellin (SW:FLIB_SALTY); lysine-N-methylase 2058984 fliB 588858002478 fliB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lysine-N-methylase YP_005237926.1 2057779 R 588858 CDS YP_005237927.1 378450568 complement(2059063..2060550) 1 NC_016856.1 structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; flagellin 2060550 fliC 588858002479 fliC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellin YP_005237927.1 2059063 R 588858 CDS YP_005237928.1 378450569 complement(2060568..2060705) 1 NC_016856.1 hypothetical protein 2060705 588858002480 STM14_2379 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237928.1 2060568 R 588858 CDS YP_005237929.1 378450570 2060807..2062210 1 NC_016856.1 involved in flagellin assembly; flagellar capping protein 2062210 fliD 588858002481 fliD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar capping protein YP_005237929.1 2060807 D 588858 CDS YP_005237930.1 378450571 2062225..2062632 1 NC_016856.1 flagellin specific chaperone; flagellar protein FliS 2062632 fliS 588858002482 fliS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar protein FliS YP_005237930.1 2062225 D 588858 CDS YP_005237931.1 378450572 2062632..2063000 1 NC_016856.1 binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family; flagellar biosynthesis protein FliT 2063000 fliT 588858002483 fliT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar biosynthesis protein FliT YP_005237931.1 2062632 D 588858 CDS YP_005237932.1 378450573 2063072..2064556 1 NC_016856.1 converts 1,4-alpha-D-glucans to maltodextrin; alpha-amylase 2064556 amyA 588858002484 amyA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S alpha-amylase YP_005237932.1 2063072 D 588858 CDS YP_005237933.1 378450574 complement(2064596..2065021) 1 NC_016856.1 hypothetical 15.5 kDa protein in amyA-fliE intergenic region (SW:YEDD_SALTY); hypothetical protein 2065021 yedD 588858002485 yedD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237933.1 2064596 R 588858 CDS YP_005237934.1 378450575 2065147..2066412 1 NC_016856.1 hypothetical 44.2 kDa protein in amyA-fliE intergenic region (SW:YEDE_SALTY); component of transport system; putative inner membrane protein 2066412 yedE 588858002486 yedE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237934.1 2065147 D 588858 CDS YP_005237935.1 378450576 2066409..2066642 1 NC_016856.1 hypothetical 8.6 kDa protein in amyA-fliE intergenic region; ORF 9 (SW:YEDF_ECOLI); hypothetical protein 2066642 yedF 588858002487 yedF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237935.1 2066409 D 588858 CDS YP_005237936.1 378450577 2066907..2067293 1 NC_016856.1 putative 50S ribosomal protein 2067293 588858002488 STM14_2387 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative 50S ribosomal protein YP_005237936.1 2066907 D 588858 CDS YP_005237937.1 378450578 complement(2067413..2067727) 1 NC_016856.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 2067727 fliE 588858002489 fliE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar hook-basal body protein FliE YP_005237937.1 2067413 R 588858 CDS YP_005237938.1 378450579 complement(2067774..2067902) 1 NC_016856.1 hypothetical protein 2067902 588858002490 STM14_2389 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237938.1 2067774 R 588858 CDS YP_005237939.1 378450580 2067944..2069626 1 NC_016856.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 2069626 fliF 588858002491 fliF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar MS-ring protein YP_005237939.1 2067944 D 588858 CDS YP_005237940.1 378450581 2069619..2070614 1 NC_016856.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 2070614 fliG 588858002492 fliG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar motor switch protein G YP_005237940.1 2069619 D 588858 CDS YP_005237941.1 378450582 2070607..2071314 1 NC_016856.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 2071314 fliH 588858002493 fliH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar assembly protein H YP_005237941.1 2070607 D 588858 CDS YP_005237942.1 378450583 2071314..2072684 1 NC_016856.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 2072684 fliI 588858002494 fliI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellum-specific ATP synthase YP_005237942.1 2071314 D 588858 CDS YP_005237943.1 378450584 2072706..2073149 1 NC_016856.1 rod/hook and filament chaperone; flagellar biosynthesis chaperone 2073149 fliJ 588858002495 fliJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar biosynthesis chaperone YP_005237943.1 2072706 D 588858 CDS YP_005237944.1 378450585 2073146..2074363 1 NC_016856.1 flagellar hook-length control protein (SW:FLIK_SALTY); flagellar hook-length control protein 2074363 fliK 588858002496 fliK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar hook-length control protein YP_005237944.1 2073146 D 588858 CDS YP_005237945.1 378450586 2074468..2074935 1 NC_016856.1 interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 2074935 fliL 588858002497 fliL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar basal body-associated protein FliL YP_005237945.1 2074468 D 588858 CDS YP_005237946.1 378450587 2074940..2075944 1 NC_016856.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 2075944 fliM 588858002498 fliM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar motor switch protein FliM YP_005237946.1 2074940 D 588858 CDS YP_005237947.1 378450588 2075941..2076354 1 NC_016856.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliN 2076354 fliN 588858002499 fliN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar motor switch protein FliN YP_005237947.1 2075941 D 588858 CDS YP_005237948.1 378450589 2076354..2076731 1 NC_016856.1 with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus; flagellar biosynthesis protein FliO 2076731 fliO 588858002500 fliO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar biosynthesis protein FliO YP_005237948.1 2076354 D 588858 CDS YP_005237949.1 378450590 2076731..2077468 1 NC_016856.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 2077468 fliP 588858002501 fliP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar biosynthesis protein FliP YP_005237949.1 2076731 D 588858 CDS YP_005237950.1 378450591 2077478..2077747 1 NC_016856.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 2077747 fliQ 588858002502 fliQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar biosynthesis protein FliQ YP_005237950.1 2077478 D 588858 CDS YP_005237951.1 378450592 2077756..2078550 1 NC_016856.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 2078550 fliR 588858002503 fliR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellar biosynthesis protein FliR YP_005237951.1 2077756 D 588858 CDS YP_005237952.1 378450593 2078832..2079455 1 NC_016856.1 positive transcriptional regulator of capsular/exo-polysaccharide synthesis; LuxR/UhpA family (SW:RCSA_SALTY); colanic acid capsular biosynthesis activation protein A 2079455 rcsA 588858002504 rcsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S colanic acid capsular biosynthesis activation protein A YP_005237952.1 2078832 D 588858 CDS YP_005237953.1 378450594 complement(2079494..2079688) 1 NC_016856.1 downstream region B; regulated by DsrA and HNS, under control of RpoS; hypothetical protein 2079688 dsrB 588858002505 dsrB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237953.1 2079494 R 588858 CDS YP_005237954.1 378450595 2079817..2080044 1 NC_016856.1 putative cytoplasmic protein 2080044 yodD 588858002506 yodD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237954.1 2079817 D 588858 CDS YP_005237955.1 378450596 2080354..2081169 1 NC_016856.1 catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 2081169 yedP 588858002508 yedP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S mannosyl-3-phosphoglycerate phosphatase YP_005237955.1 2080354 D 588858 CDS YP_005237956.1 378450597 complement(2081148..2082860) 1 NC_016856.1 putative inner membrane protein 2082860 588858002509 STM14_2408 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237956.1 2081148 R 588858 CDS YP_005237957.2 410023192 complement(2083025..2083210) 1 NC_016856.1 putative cytoplasmic protein 2083210 588858002510 STM14_2409 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237957.2 2083025 R 588858 CDS YP_005237958.1 378450599 complement(2083287..2084198) 1 NC_016856.1 hypothetical protein 2084198 yedI 588858002511 yedI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237958.1 2083287 R 588858 CDS YP_005237959.1 378450600 2084253..2084468 1 NC_016856.1 hypothetical protein 2084468 588858002512 STM14_2411 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237959.1 2084253 D 588858 CDS YP_005237960.1 378450601 2084374..2085294 1 NC_016856.1 similar to Escherichia coli putative transmembrane subunit (AAC75025.1); hypothetical protein 2085294 yedA 588858002513 yedA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237960.1 2084374 D 588858 CDS YP_005237961.1 378450602 complement(2085283..2085753) 1 NC_016856.1 similar to Escherichia coli DNA mismatch endonuclease patch repair protein (AAC75026.1); patch repair protein; DNA mismatch endonuclease 2085753 vsr 588858002514 vsr Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA mismatch endonuclease YP_005237961.1 2085283 R 588858 CDS YP_005237962.1 378450603 complement(2085734..2087164) 1 NC_016856.1 similar to Escherichia coli DNA cytosine methylase (AAC75027.1); DNA cytosine methylase 2087164 dcm 588858002515 dcm Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA cytosine methylase YP_005237962.1 2085734 R 588858 CDS YP_005237963.1 378450604 complement(2087238..2087933) 1 NC_016856.1 hypothetical protein 2087933 yedJ 588858002516 yedJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237963.1 2087238 R 588858 CDS YP_005237964.1 378450605 complement(2088025..2088324) 1 NC_016856.1 putative inner membrane protein 2088324 588858002517 STM14_2416 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005237964.1 2088025 R 588858 CDS YP_005237965.1 378450606 2088843..2088962 1 NC_016856.1 hypothetical protein 2088962 588858002518 STM14_2417 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237965.1 2088843 D 588858 CDS YP_005237966.1 378450607 2088974..2090170 1 NC_016856.1 similar to Escherichia coli putative outer membrane protein (AAC74459.1); putative porin 2090170 ompS 588858002519 ompS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative porin YP_005237966.1 2088974 D 588858 CDS YP_005237967.1 378450608 complement(2090431..2090643) 1 NC_016856.1 putative cold-shock protein 2090643 588858002520 STM14_2419 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cold-shock protein YP_005237967.1 2090431 R 588858 CDS YP_005237968.1 378450609 complement(2090630..2090842) 1 NC_016856.1 similar to Escherichia coli cold shock-like protein (AAC74625.1); putative cold-shock protein 2090842 cspB 588858002521 cspB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cold-shock protein YP_005237968.1 2090630 R 588858 CDS YP_005237969.1 378450610 complement(2091089..2091208) 1 NC_016856.1 hypothetical protein 2091208 588858002522 STM14_2421 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237969.1 2091089 R 588858 CDS YP_005237970.1 378450611 complement(2091297..2092565) 1 NC_016856.1 binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC 2092565 umuC 588858002523 umuC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA polymerase V subunit UmuC YP_005237970.1 2091297 R 588858 CDS YP_005237971.1 378450612 complement(2092568..2092987) 1 NC_016856.1 binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuD 2092987 umuD 588858002524 umuD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA polymerase V subunit UmuD YP_005237971.1 2092568 R 588858 CDS YP_005237972.1 378450613 complement(2093114..2093275) 1 NC_016856.1 putative cytoplasmic protein 2093275 588858002525 STM14_2424 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005237972.1 2093114 R 588858 CDS YP_005237973.1 378450614 complement(2093253..2093495) 1 NC_016856.1 hypothetical protein 2093495 588858002526 STM14_2425 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237973.1 2093253 R 588858 CDS YP_005237974.1 378450615 complement(2093906..2094127) 1 NC_016856.1 DNA invertase pin protein; similar to CP-933H; AAG54580 and E14 pin: AAA24391 and Mu gin;AAF01129; hypothetical protein 2094127 588858002528 STM14_2427 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237974.1 2093906 R 588858 CDS YP_005237975.1 378450616 2094340..2095347 1 NC_016856.1 similar to S. typhimurium LT2; AAF33527; hypothetical protein 2095347 588858002529 STM14_2428 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237975.1 2094340 D 588858 CDS YP_005237976.1 378450617 complement(2095348..2095497) 1 NC_016856.1 hypothetical protein 2095497 588858002530 STM14_2429 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237976.1 2095348 R 588858 CDS YP_005237977.1 378450618 complement(2095632..2096201) 1 NC_016856.1 similar to Mu gpU; AAF01128 and P2 gpG; AAD03287; putative tail fiber assembly protein 2096201 588858002531 STM14_2430 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative tail fiber assembly protein YP_005237977.1 2095632 R 588858 CDS YP_005237978.1 378450619 complement(2096201..2097763) 1 NC_016856.1 Phage tail protein; similar to Fels-2 phage tail protein NP_461634 and lambda related protein in pMT1 NP_047853; hypothetical protein 2097763 588858002532 STM14_2431 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237978.1 2096201 R 588858 CDS YP_005237979.1 378450620 complement(2097750..2098337) 1 NC_016856.1 hypothetical protein 2098337 588858002533 STM14_2432 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237979.1 2097750 R 588858 CDS YP_005237980.1 378450621 complement(2099413..2099826) 1 NC_016856.1 hypothetical protein 2099826 588858002535 STM14_2434 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237980.1 2099413 R 588858 CDS YP_005237981.1 378450622 complement(2099831..2100364) 1 NC_016856.1 similar to Mu gp45; AAF01123; putative base plate assembly protein 2100364 588858002536 STM14_2435 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative base plate assembly protein YP_005237981.1 2099831 R 588858 CDS YP_005237982.1 378450623 complement(2100364..2101422) 1 NC_016856.1 similar to Mu P; NP_050648; tail protein 2101422 588858002537 STM14_2436 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tail protein YP_005237982.1 2100364 R 588858 CDS YP_005237983.1 378450624 complement(2101419..2102759) 1 NC_016856.1 similar to Mu N; AAC23161; hypothetical protein 2102759 588858002538 STM14_2437 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237983.1 2101419 R 588858 CDS YP_005237984.1 378450625 complement(2102793..2104721) 1 NC_016856.1 similar to Xylella fastidiosa ; F82769; phage related tail protein 2104721 588858002539 STM14_2438 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage related tail protein YP_005237984.1 2102793 R 588858 CDS YP_005237985.1 378450626 complement(2104733..2105140) 1 NC_016856.1 hypothetical protein 2105140 588858002540 STM14_2439 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237985.1 2104733 R 588858 CDS YP_005237986.1 378450627 complement(2105128..2105484) 1 NC_016856.1 similar to Mu gpM; BAA19196; tail tube protein 2105484 588858002541 STM14_2440 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tail tube protein YP_005237986.1 2105128 R 588858 CDS YP_005237987.1 378450628 complement(2105484..2106980) 1 NC_016856.1 similar to Mu gpL; P44233; tail sheat protein 2106980 588858002542 STM14_2441 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tail sheat protein YP_005237987.1 2105484 R 588858 CDS YP_005237988.1 378450629 complement(2106970..2107134) 1 NC_016856.1 hypothetical protein 2107134 588858002543 STM14_2442 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237988.1 2106970 R 588858 CDS YP_005237989.1 378450630 complement(2107138..2107698) 1 NC_016856.1 hypothetical protein 2107698 588858002544 STM14_2443 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237989.1 2107138 R 588858 CDS YP_005237990.1 378450631 complement(2107695..2108207) 1 NC_016856.1 hypothetical protein 2108207 588858002545 STM14_2444 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237990.1 2107695 R 588858 CDS YP_005237991.1 378450632 complement(2108179..2108583) 1 NC_016856.1 hypothetical protein 2108583 588858002546 STM14_2445 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237991.1 2108179 R 588858 CDS YP_005237992.1 378450633 complement(2108580..2108903) 1 NC_016856.1 similar to CP-933C; AAG55948; hypothetical protein 2108903 588858002547 STM14_2446 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237992.1 2108580 R 588858 CDS YP_005237993.1 378450634 complement(2108906..2109106) 1 NC_016856.1 hypothetical protein 2109106 588858002548 STM14_2447 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237993.1 2108906 R 588858 CDS YP_005237994.1 378450635 complement(2109157..2110362) 1 NC_016856.1 similar to Agrobacterium tumefaciens; AAK86763; major capsid protein 2110362 588858002549 STM14_2448 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S major capsid protein YP_005237994.1 2109157 R 588858 CDS YP_005237995.1 378450636 complement(2110377..2111063) 1 NC_016856.1 similar to Rhodobacter capsulatus; AAF13181; pro-head protease 2111063 588858002550 STM14_2449 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pro-head protease YP_005237995.1 2110377 R 588858 CDS YP_005237996.1 378450637 complement(2111005..2112249) 1 NC_016856.1 similar to Hk97 gp3; AAA80202 and HK022; AAF30355; portal protein 2112249 588858002551 STM14_2450 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S portal protein YP_005237996.1 2111005 R 588858 CDS YP_005237997.1 378450638 complement(2112246..2112428) 1 NC_016856.1 hypothetical protein 2112428 588858002552 STM14_2451 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237997.1 2112246 R 588858 CDS YP_005237998.1 378450639 complement(2112440..2114173) 1 NC_016856.1 similar to E. coli YMFN; P75978. D3; AAD38954; terminase large subunit 2114173 588858002553 STM14_2452 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S terminase large subunit YP_005237998.1 2112440 R 588858 CDS YP_005237999.1 378450640 complement(2114170..2114664) 1 NC_016856.1 hypothetical protein 2114664 588858002554 STM14_2453 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005237999.1 2114170 R 588858 CDS YP_005238000.1 378450641 complement(2114790..2115140) 1 NC_016856.1 similar to Xenorhabdus nematophila; CAB58450; hypothetical protein 2115140 588858002555 STM14_2454 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238000.1 2114790 R 588858 CDS YP_005238001.1 378450642 complement(2115201..2115503) 1 NC_016856.1 hypothetical protein 2115503 588858002556 STM14_2455 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238001.1 2115201 R 588858 CDS YP_005238002.1 378450643 complement(2115612..2115710) 1 NC_016856.1 hypothetical protein 2115710 588858002557 STM14_2456 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238002.1 2115612 R 588858 CDS YP_005238003.1 378450644 complement(2115723..2116142) 1 NC_016856.1 hypothetical protein 2116142 588858002558 STM14_2457 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238003.1 2115723 R 588858 CDS YP_005238004.1 378450645 complement(2116355..2116840) 1 NC_016856.1 similar to ES18 gp15; CAA47618; lysis protein 2116840 588858002559 STM14_2458 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lysis protein YP_005238004.1 2116355 R 588858 CDS YP_005238005.1 378450646 complement(2116837..2117451) 1 NC_016856.1 similar to Pseudomonas aeruginosa; BAA83137; lytic enzyme (putative glycohydrolase) 2117451 588858002560 STM14_2459 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lytic enzyme (putative glycohydrolase) YP_005238005.1 2116837 R 588858 CDS YP_005238006.1 378450647 complement(2117454..2117798) 1 NC_016856.1 similar to Xenorhabdus nematophila ; CAB58444 and P22 gp13; AAF75039; lysis protein (holin) 2117798 588858002561 STM14_2460 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lysis protein (holin) YP_005238006.1 2117454 R 588858 CDS YP_005238007.1 378450648 2117839..2117967 1 NC_016856.1 hypothetical protein 2117967 588858002562 STM14_2461 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238007.1 2117839 D 588858 CDS YP_005238008.1 378450649 complement(2118324..2118683) 1 NC_016856.1 hypothetical protein 2118683 588858002563 STM14_2462 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238008.1 2118324 R 588858 CDS YP_005238009.1 378450650 complement(2118714..2119337) 1 NC_016856.1 hypothetical protein 2119337 588858002564 STM14_2463 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238009.1 2118714 R 588858 CDS YP_005238010.1 378450651 complement(2119348..2120301) 1 NC_016856.1 similar to E.coli O157:H7; BAB35618 and CP-933O; AAG56170; hypothetical protein 2120301 588858002565 STM14_2464 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238010.1 2119348 R 588858 CDS YP_005238011.1 378450652 complement(2120345..2121205) 1 NC_016856.1 similar to Xylella fastidiosa; XF2294; hypothetical protein 2121205 588858002566 STM14_2465 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238011.1 2120345 R 588858 CDS YP_005238012.1 378450653 complement(2121222..2121611) 1 NC_016856.1 similar to CP-9333U; AAG57024 and CP-933O; AAG56131; crossover junction protein 2121611 588858002567 STM14_2466 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S crossover junction protein YP_005238012.1 2121222 R 588858 CDS YP_005238013.1 378450654 complement(2121608..2122501) 1 NC_016856.1 similar to E. coli b2356; A65009 and E. coli 10.3KDa; P76509 and CP-933V; AAG57233; putative DNA methyl transferase 2122501 588858002568 STM14_2467 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA methyl transferase YP_005238013.1 2121608 R 588858 CDS YP_005238014.1 378450655 complement(2122501..2123025) 1 NC_016856.1 similar to E. coli 18.8KDa b2357; P76510 and E. coli O157:H7; BAB34011; putative transcriptional activator 2123025 588858002569 STM14_2468 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional activator YP_005238014.1 2122501 R 588858 CDS YP_005238015.1 378450656 complement(2122985..2123803) 1 NC_016856.1 similar to CP-933M; AAG55470 and E. coli; BAB16223; putative replication protein 2123803 588858002570 STM14_2469 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative replication protein YP_005238015.1 2122985 R 588858 CDS YP_005238016.1 378450657 complement(2123800..2124024) 1 NC_016856.1 hypothetical protein 2124024 588858002571 STM14_2470 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238016.1 2123800 R 588858 CDS YP_005238017.1 378450658 complement(2124021..2125178) 1 NC_016856.1 similar to S. flexneri 179; S34345 and P4 ORF199; CAA80647; hypothetical protein 2125178 588858002572 STM14_2471 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238017.1 2124021 R 588858 CDS YP_005238018.1 378450659 complement(2125175..2125729) 1 NC_016856.1 similar to E14 ymfl; P75976; putative phage-encoded DNA-binding protein 2125729 588858002573 STM14_2472 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phage-encoded DNA-binding protein YP_005238018.1 2125175 R 588858 CDS YP_005238019.1 378450660 complement(2125758..2125982) 1 NC_016856.1 similar to Streptomyces coelicolor; CAB39703; DNA binding protein 2125982 588858002574 STM14_2473 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA binding protein YP_005238019.1 2125758 R 588858 CDS YP_005238020.1 378450661 2126080..2126775 1 NC_016856.1 similar to HK022 cI; CAA3422 and Xylella fastidiosa ; F82772; regulatory protein 2126775 588858002575 STM14_2474 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S regulatory protein YP_005238020.1 2126080 D 588858 CDS YP_005238021.2 410023193 2127590..2127961 1 NC_016856.1 similar to E. coli 16.5Kda INTC-DSDC and Xylella fastidiosa; XF1650; hypothetical protein 2127961 588858002576 STM14_2475 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238021.2 2127590 D 588858 CDS YP_005238022.1 378450663 2128019..2128846 1 NC_016856.1 similar to E. coli INTC-DSDC region and Xylella fastidiosa;E82655; hypothetical protein 2128846 588858002577 STM14_2476 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238022.1 2128019 D 588858 CDS YP_005238023.1 378450664 2128983..2129522 1 NC_016856.1 hypothetical protein 2129522 588858002578 STM14_2477 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238023.1 2128983 D 588858 CDS YP_005238024.1 378450665 2129593..2129823 1 NC_016856.1 hypothetical protein 2129823 588858002579 STM14_2478 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238024.1 2129593 D 588858 CDS YP_005238025.1 378450666 2129820..2130335 1 NC_016856.1 hypothetical protein 2130335 588858002580 STM14_2479 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238025.1 2129820 D 588858 CDS YP_005238026.1 378450667 2130332..2130949 1 NC_016856.1 similar to N15 gp45;AAC19083 and CP-933R; AAG56431; hypothetical protein 2130949 588858002581 STM14_2480 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238026.1 2130332 D 588858 CDS YP_005238027.1 378450668 2130946..2131779 1 NC_016856.1 similar to H19J; CAB38712 and 933W; AAD25483; hypothetical protein 2131779 588858002582 STM14_2481 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238027.1 2130946 D 588858 CDS YP_005238028.1 378450669 2131783..2132352 1 NC_016856.1 similar to CP-933O; AAG56113 and CP-933P; AAK16992 and CP-933M; AAG55458; endodeoxyribonuclease 2132352 588858002583 STM14_2482 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S endodeoxyribonuclease YP_005238028.1 2131783 D 588858 CDS YP_005238029.1 378450670 2132377..2132619 1 NC_016856.1 hypothetical protein 2132619 588858002584 STM14_2483 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238029.1 2132377 D 588858 CDS YP_005238030.1 378450671 2132621..2133610 1 NC_016856.1 similar to CP-933U; AAG57039 and CP-933M; AAG55457; integrase protein 2133610 588858002585 STM14_2484 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S integrase protein YP_005238030.1 2132621 D 588858 CDS YP_005238031.1 378450672 2133902..2134699 1 NC_016856.1 putative inner membrane protein 2134699 yeeI 588858002586 yeeI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238031.1 2133902 D 588858 CDS YP_005238032.1 378450673 2136009..2136482 1 NC_016856.1 putative endoprotease 2136482 588858002590 STM14_2489 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative endoprotease YP_005238032.1 2136009 D 588858 CDS YP_005238033.1 378450674 2136957..2137655 1 NC_016856.1 putative DNA-binding protein 2137655 588858002591 STM14_2490 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA-binding protein YP_005238033.1 2136957 D 588858 CDS YP_005238034.1 378450675 2137998..2140166 1 NC_016856.1 contains TPR repeats; hypothetical protein 2140166 588858002592 STM14_2491 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238034.1 2137998 D 588858 CDS YP_005238035.1 378450676 2140223..2141953 1 NC_016856.1 hypothetical protein 2141953 588858002593 STM14_2492 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238035.1 2140223 D 588858 CDS YP_005238036.1 378450677 2142163..2142336 1 NC_016856.1 hypothetical protein 2142336 588858002594 STM14_2493 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238036.1 2142163 D 588858 CDS YP_005238037.1 378450678 complement(2142487..2142741) 1 NC_016856.1 hypothetical protein 2142741 588858002595 STM14_2494 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238037.1 2142487 R 588858 CDS YP_005238038.1 378450679 complement(2142858..2144312) 1 NC_016856.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 2144312 amn 588858002596 amn Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S AMP nucleosidase YP_005238038.1 2142858 R 588858 CDS YP_005238039.1 378450680 complement(2144508..2144834) 1 NC_016856.1 similar to STM2508 and STM2902; putative cytoplasmic protein 2144834 588858002597 STM14_2496 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238039.1 2144508 R 588858 CDS YP_005238040.1 378450681 complement(2144828..2145214) 1 NC_016856.1 hypothetical protein 2145214 588858002598 STM14_2497 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238040.1 2144828 R 588858 CDS YP_005238041.1 378450682 2145540..2145707 1 NC_016856.1 similar to STM2508 and STM2901; hypothetical protein 2145707 588858002599 STM14_2498 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238041.1 2145540 D 588858 CDS YP_005238042.1 378450683 complement(2145928..2147385) 1 NC_016856.1 MATE family; hypothetical protein 2147385 yeeO 588858002601 yeeO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238042.1 2145928 R 588858 CDS YP_005238043.1 378450684 complement(2147387..2147539) 1 NC_016856.1 hypothetical protein 2147539 588858002602 STM14_2501 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238043.1 2147387 R 588858 CDS YP_005238044.1 378450685 complement(2147847..2148776) 1 NC_016856.1 protein ErkF/SrfK precursor (SW:ERFK_SALTY); hypothetical protein 2148776 erfK 588858002604 erfK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238044.1 2147847 R 588858 CDS YP_005238045.1 378450686 complement(2148854..2149924) 1 NC_016856.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2149924 cobT 588858002605 cobT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_005238045.1 2148854 R 588858 CDS YP_005238046.1 378450687 complement(2149951..2150694) 1 NC_016856.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 2150694 cobS 588858002606 cobS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cobalamin synthase YP_005238046.1 2149951 R 588858 CDS YP_005238047.1 378450688 complement(2150691..2151236) 1 NC_016856.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 2151236 cobU 588858002607 cobU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase YP_005238047.1 2150691 R 588858 CDS YP_005238048.1 378450689 complement(2151233..2152753) 1 NC_016856.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 2152753 cbiP 588858002608 cbiP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cobyric acid synthase YP_005238048.1 2151233 R 588858 CDS YP_005238049.1 378450690 complement(2152750..2153565) 1 NC_016856.1 with CbiNQ forms the ABC transporter for cobalt import; cobalt transporter ATP-binding subunit 2153565 cbiO 588858002609 cbiO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cobalt transporter ATP-binding subunit YP_005238049.1 2152750 R 588858 CDS YP_005238050.1 378450691 complement(2153574..2154251) 1 NC_016856.1 cobalt transport protein CbiQ (SW:CBIQ_SALTY); vitamin B12 biosynthetic protein 2154251 cbiQ 588858002610 cbiQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S vitamin B12 biosynthetic protein YP_005238050.1 2153574 R 588858 CDS YP_005238051.1 378450692 complement(2154238..2154519) 1 NC_016856.1 periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN 2154519 cbiN 588858002611 cbiN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cobalt transport protein CbiN YP_005238051.1 2154238 R 588858 CDS YP_005238052.1 378450693 complement(2154521..2155168) 1 NC_016856.1 catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 2155168 cbiM 588858002612 cbiM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cobalt transport protein CbiM YP_005238052.1 2154521 R 588858 CDS YP_005238053.1 378450694 complement(2155255..2155968) 1 NC_016856.1 catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase 2155968 cbiL 588858002613 cbiL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cobalt-precorrin-2 C(20)-methyltransferase YP_005238053.1 2155255 R 588858 CDS YP_005238054.1 378450695 complement(2155965..2156759) 1 NC_016856.1 cobalt chelatase (SW:CBIK_SALTY); vitamin B12 biosynthetic protein 2156759 cbiK 588858002614 cbiK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S vitamin B12 biosynthetic protein YP_005238054.1 2155965 R 588858 CDS YP_005238055.1 378450696 complement(2156762..2157553) 1 NC_016856.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 2157553 cbiJ 588858002615 cbiJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cobalt-precorrin-6x reductase YP_005238055.1 2156762 R 588858 CDS YP_005238056.1 378450697 complement(2157550..2158275) 1 NC_016856.1 catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine; precorrin-3B C(17)-methyltransferase 2158275 cbiH 588858002616 cbiH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S precorrin-3B C(17)-methyltransferase YP_005238056.1 2157550 R 588858 CDS YP_005238057.1 378450698 complement(2158275..2159330) 1 NC_016856.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG 2159330 cbiG 588858002617 cbiG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cobalamin biosynthesis protein CbiG YP_005238057.1 2158275 R 588858 CDS YP_005238058.1 378450699 complement(2159311..2160084) 1 NC_016856.1 precorrin-4 C11-methyltransferase (SW:CBIF_SALTY); vitamin B12 biosynthetic protein 2160084 cbiF 588858002618 cbiF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S vitamin B12 biosynthetic protein YP_005238058.1 2159311 R 588858 CDS YP_005238059.1 378450700 complement(2160068..2160646) 1 NC_016856.1 catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; cobalt-precorrin-6Y C(15)-methyltransferase 2160646 cbiT 588858002619 cbiT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cobalt-precorrin-6Y C(15)-methyltransferase YP_005238059.1 2160068 R 588858 CDS YP_005238060.1 378450701 complement(2160636..2161241) 1 NC_016856.1 catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; cobalt-precorrin-6Y C(5)-methyltransferase 2161241 cbiE 588858002620 cbiE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cobalt-precorrin-6Y C(5)-methyltransferase YP_005238060.1 2160636 R 588858 CDS YP_005238061.1 378450702 complement(2161235..2162374) 1 NC_016856.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 2162374 cbiD 588858002621 cbiD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cobalt-precorrin-6A synthase YP_005238061.1 2161235 R 588858 CDS YP_005238062.1 378450703 complement(2162374..2163006) 1 NC_016856.1 catalyzes the interconversion of precorrin-8X and cobyrinic acid; precorrin-8X methylmutase 2163006 cbiC 588858002622 cbiC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S precorrin-8X methylmutase YP_005238062.1 2162374 R 588858 CDS YP_005238063.1 378450704 complement(2163017..2163976) 1 NC_016856.1 converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; protein CbiB 2163976 cbiB 588858002623 cbiB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S protein CbiB YP_005238063.1 2163017 R 588858 CDS YP_005238064.1 378450705 complement(2163973..2165352) 1 NC_016856.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 2165352 cbiA 588858002624 cbiA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cobyrinic acid a,c-diamide synthase YP_005238064.1 2163973 R 588858 CDS YP_005238065.1 378450706 complement(2165668..2165799) 1 NC_016856.1 hypothetical protein 2165799 588858002625 STM14_2524 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238065.1 2165668 R 588858 CDS YP_005238066.1 378450707 complement(2165950..2166861) 1 NC_016856.1 regulatory protein PocR (SW:POCR_SALTY); propanediol utilization protein; AraC family; transcriptional regulator 2166861 pocR 588858002626 pocR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator YP_005238066.1 2165950 R 588858 CDS YP_005238067.2 410023194 complement(2167078..2167872) 1 NC_016856.1 propanediol diffusion facilitator (SW:PDUF_SALTY); propanediol utilization protein; propanediol diffusion facilitator 2167872 pduF 588858002627 pduF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S propanediol diffusion facilitator YP_005238067.2 2167078 R 588858 CDS YP_005238068.1 378450709 2168398..2168682 1 NC_016856.1 propanediol utilization protein PduA (SW:PDUA_SALTY); propanediol utilization protein; polyhedral body protein 2168682 pduA 588858002628 pduA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S polyhedral body protein YP_005238068.1 2168398 D 588858 CDS YP_005238069.1 378450710 2168679..2169491 1 NC_016856.1 propanediol utilization protein PduB (SW:PDUB_SALTY); propanediol utilization protein; polyhedral body protein 2169491 pudB 588858002629 pudB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S polyhedral body protein YP_005238069.1 2168679 D 588858 CDS YP_005238070.1 378450711 2169510..2171174 1 NC_016856.1 glycerol dehydratase large subunit (SW:DHAB_SALTY); propanediol utilization protein; propanediol dehydratase large subunit 2171174 pduC 588858002630 pduC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S propanediol dehydratase large subunit YP_005238070.1 2169510 D 588858 CDS YP_005238071.1 378450712 2171185..2171859 1 NC_016856.1 propanediol utilization protein; propanediol dehydratase medium subunit 2171859 pduD 588858002631 pduD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S propanediol dehydratase medium subunit YP_005238071.1 2171185 D 588858 CDS YP_005238072.1 378450713 2171874..2172395 1 NC_016856.1 propanediol utilization protein; propanediol dehydratase small subunit 2172395 pduE 588858002632 pduE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S propanediol dehydratase small subunit YP_005238072.1 2171874 D 588858 CDS YP_005238073.1 378450714 2172405..2174237 1 NC_016856.1 propanediol utilization protein; propanediol dehydratase reactivation protein 2174237 pduG 588858002633 pduG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S propanediol dehydratase reactivation protein YP_005238073.1 2172405 D 588858 CDS YP_005238074.1 378450715 2174227..2174577 1 NC_016856.1 propanediol utilization protein; propanediol dehydratase reactivation protein 2174577 pduH 588858002634 pduH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S propanediol dehydratase reactivation protein YP_005238074.1 2174227 D 588858 CDS YP_005238075.1 378450716 2174596..2174871 1 NC_016856.1 similar to Escherichia coli detox protein (AAC75510.1); propanediol utilization protein; polyhedral body protein 2174871 pduJ 588858002635 pduJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S polyhedral body protein YP_005238075.1 2174596 D 588858 CDS YP_005238076.1 378450717 2174875..2175357 1 NC_016856.1 similar to Escherichia coli detox protein (AAC75510.1); propanediol utilization protein; polyhedral body protein 2175357 pduK 588858002636 pduK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S polyhedral body protein YP_005238076.1 2174875 D 588858 CDS YP_005238077.1 378450718 2175357..2175989 1 NC_016856.1 propanediol utilization protein 2175989 pduL 588858002637 pduL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S propanediol utilization protein YP_005238077.1 2175357 D 588858 CDS YP_005238078.1 378450719 2175986..2176477 1 NC_016856.1 propanediol utilization protein 2176477 pduM 588858002638 pduM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S propanediol utilization protein YP_005238078.1 2175986 D 588858 CDS YP_005238079.1 378450720 2176481..2176756 1 NC_016856.1 similar to Escherichia coli detox protein (AAC75509.1); propanediol utilization protein; polyhedral body protein 2176756 pduN 588858002639 pduN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S polyhedral body protein YP_005238079.1 2176481 D 588858 CDS YP_005238080.1 378450721 2176766..2177776 1 NC_016856.1 related to B12-dependent glycerol dehydratase; propanediol utilization protein 2177776 pduO 588858002640 pduO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S propanediol utilization protein YP_005238080.1 2176766 D 588858 CDS YP_005238081.1 378450722 2177773..2179167 1 NC_016856.1 similar to Escherichia coli ethanolamine utilization; similar to acetaldehyde dehydrogenase (AAC75508.1); propanediol utilization protein; CoA-dependent propionaldehyde dehydrogenase 2179167 pduP 588858002641 pduP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S CoA-dependent propionaldehyde dehydrogenase YP_005238081.1 2177773 D 588858 CDS YP_005238082.1 378450723 2179179..2180291 1 NC_016856.1 similar to Escherichia coli CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase (AAC74323.1); propanediol utilization protein; propanol dehydrogenase 2180291 pduQ 588858002642 pduQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S propanol dehydrogenase YP_005238082.1 2179179 D 588858 CDS YP_005238083.1 378450724 2180288..2181643 1 NC_016856.1 similar to Escherichia coli putative membrane protein (AAC74701.1); propanediol utilization protein; polyhedral body protein 2181643 pduS 588858002643 pduS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S polyhedral body protein YP_005238083.1 2180288 D 588858 CDS YP_005238084.1 378450725 2181646..2182200 1 NC_016856.1 similar to Escherichia coli detox protein (AAC75510.1); propanediol utilization protein; polyhedral body protein 2182200 pduT 588858002644 pduT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S polyhedral body protein YP_005238084.1 2181646 D 588858 CDS YP_005238085.1 378450726 2182200..2182550 1 NC_016856.1 propanediol utilization protein PduU (SW:PDUU_SALTY); propanediol utilization protein; polyhedral body protein 2182550 pduU 588858002645 pduU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S polyhedral body protein YP_005238085.1 2182200 D 588858 CDS YP_005238086.1 378450727 2182555..2183007 1 NC_016856.1 propanediol utilization protein PduV (SW:PDUV_SALTY); propanediol utilization protein 2183007 pduV 588858002646 pduV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S propanediol utilization protein YP_005238086.1 2182555 D 588858 CDS YP_005238087.1 378450728 2182992..2184206 1 NC_016856.1 involved in coenzyme B(12)-dependent 1, 2-propanediol degradation; important for the synthesis of propionyl coenzyme A during growth on 1,2-propanediol; propionate kinase 2184206 pduW 588858002647 pduW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S propionate kinase YP_005238087.1 2182992 D 588858 CDS YP_005238088.1 378450729 2184264..2185166 1 NC_016856.1 propanediol utilization protein 2185166 pduX 588858002648 pduX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S propanediol utilization protein YP_005238088.1 2184264 D 588858 CDS YP_005238089.1 378450730 complement(2185200..2185535) 1 NC_016856.1 similar to Escherichia coli putative alpha helix protein (AAC75068.1); hypothetical protein 2185535 yeeX 588858002649 yeeX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238089.1 2185200 R 588858 CDS YP_005238090.1 378450731 complement(2185570..2185701) 1 NC_016856.1 hypothetical protein 2185701 588858002650 STM14_2549 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238090.1 2185570 R 588858 CDS YP_005238091.1 378450732 complement(2185780..2186838) 1 NC_016856.1 putative inner membrane protein 2186838 yeeA 588858002651 yeeA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238091.1 2185780 R 588858 CDS YP_005238092.1 378450733 complement(2186957..2187424) 1 NC_016856.1 similar to DNA gyrase inhibitory protein (SW:GYRI_SALTY); DNA gyrase inhibitor 2187424 sbmC 588858002652 sbmC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA gyrase inhibitor YP_005238092.1 2186957 R 588858 CDS YP_005238093.1 378450734 complement(2187577..2188749) 1 NC_016856.1 removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 2188749 dacD 588858002653 dacD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-alanyl-D-alanine carboxypeptidase YP_005238093.1 2187577 R 588858 CDS YP_005238094.1 378450735 complement(2188873..2189637) 1 NC_016856.1 membrane-anchoring protein (SW:PHSC_SALTY); hydrogen sulfide production; thiosulfate reductase cytochrome B subunit 2189637 phsC 588858002654 phsC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiosulfate reductase cytochrome B subunit YP_005238094.1 2188873 R 588858 CDS YP_005238095.1 378450736 complement(2189634..2190212) 1 NC_016856.1 PhsB (SW:PHSB_SALTY); hydrogen sulfide production; iron-sulfur subunit; electron transfer; thiosulfate reductase electron transport protein 2190212 phsB 588858002655 phsB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiosulfate reductase electron transport protein YP_005238095.1 2189634 R 588858 CDS YP_005238096.1 378450737 complement(2190227..2192503) 1 NC_016856.1 membrane-anchoring protein (SW:PHSA_SALTY); hydrogen sulfide production; thiosulfate reductase 2192503 phsA 588858002656 phsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiosulfate reductase YP_005238096.1 2190227 R 588858 CDS YP_005238097.1 378450738 complement(2192950..2193219) 1 NC_016856.1 hypothetical protein 2193219 588858002657 STM14_2556 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238097.1 2192950 R 588858 CDS YP_005238098.1 378450739 2193122..2195470 1 NC_016856.1 similar to protein from Salmonella dublin; translocated by SPI-1; type III secretion; secreted effector protein 2195470 sopA 588858002658 sopA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secreted effector protein YP_005238098.1 2193122 D 588858 CDS YP_005238099.1 378450740 complement(2195674..2195796) 1 NC_016856.1 hypothetical protein 2195796 588858002659 STM14_2558 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238099.1 2195674 R 588858 CDS YP_005238100.1 378450741 2195813..2197243 1 NC_016856.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2197243 sbcB 588858002660 sbcB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S exonuclease I YP_005238100.1 2195813 D 588858 CDS YP_005238101.1 378450742 complement(2197379..2198743) 1 NC_016856.1 similar to Escherichia coli putative amino acid/amine transport protein (AAC75075.1); APC family; putative amino acid transport protein 2198743 yeeF 588858002661 yeeF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative amino acid transport protein YP_005238101.1 2197379 R 588858 CDS YP_005238102.1 378450743 2198729..2198896 1 NC_016856.1 hypothetical protein 2198896 588858002662 STM14_2561 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238102.1 2198729 D 588858 CDS YP_005238103.1 378450744 complement(2198740..2198937) 1 NC_016856.1 hypothetical protein 2198937 588858002663 STM14_2562 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238103.1 2198740 R 588858 CDS YP_005238104.1 378450745 complement(2199023..2199937) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75076.1); LysR family; putative transcriptional regulator 2199937 yeeY 588858002664 yeeY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005238104.1 2199023 R 588858 CDS YP_005238105.1 378450746 complement(2199983..2200807) 1 NC_016856.1 similar to Escherichia coli putative enzyme of sugar metabolism (AAC75077.1); putative dehydratase 2200807 yeeZ 588858002665 yeeZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dehydratase YP_005238105.1 2199983 R 588858 CDS YP_005238106.2 410023195 2201167..2202066 1 NC_016856.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2202066 hisG 588858002666 hisG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP phosphoribosyltransferase YP_005238106.2 2201167 D 588858 CDS YP_005238107.1 378450748 2202169..2203473 1 NC_016856.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2203473 hisD 588858002667 hisD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S histidinol dehydrogenase YP_005238107.1 2202169 D 588858 CDS YP_005238108.1 378450749 2203470..2204549 1 NC_016856.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2204549 hisC 588858002668 hisC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S histidinol-phosphate aminotransferase YP_005238108.1 2203470 D 588858 CDS YP_005238109.1 378450750 2204546..2205613 1 NC_016856.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2205613 hisB 588858002669 hisB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_005238109.1 2204546 D 588858 CDS YP_005238110.2 410023196 2205613..2206203 1 NC_016856.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2206203 hisH 588858002670 hisH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S imidazole glycerol phosphate synthase subunit HisH YP_005238110.2 2205613 D 588858 CDS YP_005238111.1 378450752 2206203..2206940 1 NC_016856.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2206940 hisA 588858002671 hisA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_005238111.1 2206203 D 588858 CDS YP_005238112.1 378450753 2206922..2207698 1 NC_016856.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerolphosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2207698 hisF 588858002672 hisF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S imidazole glycerol phosphate synthase subunit HisF YP_005238112.1 2206922 D 588858 CDS YP_005238113.1 378450754 2207692..2208303 1 NC_016856.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2208303 hisI 588858002673 hisI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase YP_005238113.1 2207692 D 588858 CDS YP_005238114.1 378450755 complement(2208384..2209367) 1 NC_016856.1 chain length determinant protein; polysaccharide antigen chainregulator (SW:WZZB_SALTY); regulator of length of O-antigen component of lipopolysaccharide chains; lipopolysaccharide O-antigen chain length regulator 2209367 wzzB 588858002674 wzzB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipopolysaccharide O-antigen chain length regulator YP_005238114.1 2208384 R 588858 CDS YP_005238115.1 378450756 complement(2209510..2210676) 1 NC_016856.1 UDP-glucose 6-dehydrogenase (SW:UDG_SALTY); UDP-glucose/GDP-mannose dehydrogenase 2210676 udg 588858002675 udg Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UDP-glucose/GDP-mannose dehydrogenase YP_005238115.1 2209510 R 588858 CDS YP_005238116.1 378450757 complement(2210913..2212319) 1 NC_016856.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 2212319 gnd 588858002676 gnd Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 6-phosphogluconate dehydrogenase YP_005238116.1 2210913 R 588858 CDS YP_005238117.1 378450758 complement(2212483..2213913) 1 NC_016856.1 undecaprenyl-phosphate galactosephosphotransferase (SW:RFBP_SALTY); mutation results in LPS side chain defect; undecaprenol-phosphate galactosephosphotransferase/O-antigen transferase 2213913 rfbP 588858002677 rfbP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S undecaprenol-phosphate galactosephosphotransferase/O-antigen transferase YP_005238117.1 2212483 R 588858 CDS YP_005238118.1 378450759 complement(2213985..2215418) 1 NC_016856.1 phosphomannomutase (SW:RFBK_SALTY); LPS side chain defect; phosphomannomutase 2215418 rfbK 588858002678 rfbK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphomannomutase YP_005238118.1 2213985 R 588858 CDS YP_005238119.1 378450760 complement(2215405..2216844) 1 NC_016856.1 mannose-1-phosphate guanylyltransferase GDP (SW:RFBM_SALTY); LPS side chain defect; mannose-1-phosphate guanylyltransferase 2216844 rfbM 588858002679 rfbM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S mannose-1-phosphate guanylyltransferase YP_005238119.1 2215405 R 588858 CDS YP_005238120.1 378450761 complement(2216845..2217789) 1 NC_016856.1 putative rhamnosyltransferase RfbN (SW:RFBN_SALTY); LPS side chain defect; rhamnosyl transferase 2217789 rfbN 588858002680 rfbN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S rhamnosyl transferase YP_005238120.1 2216845 R 588858 CDS YP_005238121.1 378450762 complement(2217790..2218851) 1 NC_016856.1 RFBU protein (SW:RFBU_SALTY); LPS side chain defect; mannosyl transferase 2218851 rfbU 588858002681 rfbU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S mannosyl transferase YP_005238121.1 2217790 R 588858 CDS YP_005238122.1 378450763 complement(2219171..2220172) 1 NC_016856.1 RFBV protein (SW:RFBV_SALTY); LPS side chain defect; abequosyltransferase 2220172 rfbV 588858002682 rfbV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S abequosyltransferase YP_005238122.1 2219171 R 588858 CDS YP_005238123.1 378450764 complement(2220177..2221469) 1 NC_016856.1 putative O-antigen transporter (SW:RFBX_SALTY); LPS side chain defect; putative O-antigen transferase 2221469 rfbX 588858002683 rfbX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative O-antigen transferase YP_005238123.1 2220177 R 588858 CDS YP_005238124.1 378450765 complement(2221551..2222450) 1 NC_016856.1 CDP-abequose synthase (SW:RFBJ_SALTY); LPS side chain defect; CDP-abequose synthase 2222450 rfbJ 588858002684 rfbJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S CDP-abequose synthase YP_005238124.1 2221551 R 588858 CDS YP_005238125.1 378450766 complement(2222478..2223791) 1 NC_016856.1 lipopolysaccharide biosynthesis protein RfbH (SW:RFBH_SALTY); LPS side chain defect; CDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase 2223791 rfbH 588858002685 rfbH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S CDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase YP_005238125.1 2222478 R 588858 CDS YP_005238126.1 378450767 complement(2223818..2224897) 1 NC_016856.1 CDP-glucose 4,6-dehydratase (SW:RFBG_SALTY); LPS side chain defect; CDP glucose 4,6-dehydratase 2224897 rfbG 588858002686 rfbG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S CDP glucose 4,6-dehydratase YP_005238126.1 2223818 R 588858 CDS YP_005238127.1 378450768 complement(2224902..2225675) 1 NC_016856.1 glucose-1-phosphate cytidylyltransferase (SW:RFBF_SALTY); LPS side chain defect; glucose-1-phosphate cytidylyltransferase 2225675 rfbF 588858002687 rfbF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucose-1-phosphate cytidylyltransferase YP_005238127.1 2224902 R 588858 CDS YP_005238128.1 378450769 complement(2225672..2226664) 1 NC_016856.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 2226664 rfbI 588858002688 rfbI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S CDP-6-deoxy-delta-3,4-glucoseen reductase YP_005238128.1 2225672 R 588858 CDS YP_005238129.1 378450770 complement(2226670..2227221) 1 NC_016856.1 DTDP-4-dehydrorhamnose 3,5-epimerase (SW:RFBC_SALTY); dTDP-4-deoxyrhamnose 3,5 epimerase 2227221 rfbC 588858002689 rfbC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dTDP-4-deoxyrhamnose 3,5 epimerase YP_005238129.1 2226670 R 588858 CDS YP_005238130.1 378450771 complement(2227222..2228100) 1 NC_016856.1 glucose-1-phosphate thymidylyltransferase (SW:RFBA_SALTY); dTDP-glucose pyrophosphorylase 2228100 rfbA 588858002690 rfbA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dTDP-glucose pyrophosphorylase YP_005238130.1 2227222 R 588858 CDS YP_005238131.1 378450772 complement(2228148..2229047) 1 NC_016856.1 with dTDP-4-dehydrorhamnose 3,5-epimerase forms a complex known as dTDP-L-rhamnose synthetase; catalyzes the reduction of dTDP-4-dehydro-6-deoxy-L-mannose to dTDP-L-rhamnose; dTDP-4-dehydrorhamnose reductase 2229047 rfbD 588858002691 rfbD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dTDP-4-dehydrorhamnose reductase YP_005238131.1 2228148 R 588858 CDS YP_005238132.1 378450773 complement(2229047..2230132) 1 NC_016856.1 NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose-4,6-dehydratase 2230132 rfbB 588858002692 rfbB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dTDP-glucose-4,6-dehydratase YP_005238132.1 2229047 R 588858 CDS YP_005238133.2 410023197 complement(2230509..2231402) 1 NC_016856.1 together with GalU subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP--glucose-1-phosphate uridylyltransferase subunit GalF 2231402 galF 588858002693 galF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UTP--glucose-1-phosphate uridylyltransferase subunit GalF YP_005238133.2 2230509 R 588858 CDS YP_005238134.1 378450775 complement(2231580..2232983) 1 NC_016856.1 WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; putative colanic acid biosynthesis protein 2232983 wcaM 588858002694 wcaM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative colanic acid biosynthesis protein YP_005238134.1 2231580 R 588858 CDS YP_005238135.1 378450776 complement(2232994..2234214) 1 NC_016856.1 putative colanic acid biosynthesis glycosyl transferase WcaL (SW:WCAL_SALTY); in colanic acid gene cluster; putative glycosyl transferase 2234214 wcaL 588858002695 wcaL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycosyl transferase YP_005238135.1 2232994 R 588858 CDS YP_005238136.1 378450777 complement(2234211..2235491) 1 NC_016856.1 similar to Escherichia coli putative galactokinase (AAC75106.1); in colanic acid gene cluster; putative pyruvyl transferase 2235491 wcaK 588858002696 wcaK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative pyruvyl transferase YP_005238136.1 2234211 R 588858 CDS YP_005238137.1 378450778 complement(2235513..2236991) 1 NC_016856.1 similar to Escherichia coli probable export protein (AAC75107.1); in colanic acid gene cluster; colanic acid exporter 2236991 wzxC 588858002697 wzxC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S colanic acid exporter YP_005238137.1 2235513 R 588858 CDS YP_005238138.1 378450779 complement(2237124..2238518) 1 NC_016856.1 WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid; putative UDP-glucose lipid carrier transferase 2238518 wcaJ 588858002698 wcaJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative UDP-glucose lipid carrier transferase YP_005238138.1 2237124 R 588858 CDS YP_005238139.1 378450780 complement(2238572..2239942) 1 NC_016856.1 phosphomannomutase in colanic acid gene cluster (SW:MANB_SALTY); phosphomannomutase 2239942 cpsG 588858002699 cpsG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphomannomutase YP_005238139.1 2238572 R 588858 CDS YP_005238140.1 378450781 2239941..2240216 1 NC_016856.1 hypothetical protein 2240216 588858002700 STM14_2599 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238140.1 2239941 D 588858 CDS YP_005238141.1 378450782 complement(2240053..2241489) 1 NC_016856.1 mannose-1-phosphate guanylyltransferase; GDP (SW:MANC_SALTY); in colanic acid gene cluster; mannose-1-phosphate guanylyltransferase 2241489 manC 588858002701 manC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S mannose-1-phosphate guanylyltransferase YP_005238141.1 2240053 R 588858 CDS YP_005238142.1 378450783 complement(2241492..2242715) 1 NC_016856.1 similar to Escherichia coli putative colanic biosynthesis glycosyl transferase (AAC75111.1); involved in in colanic acid biosynthesis; glycosyl transferase family protein 2242715 wcaI 588858002702 wcaI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycosyl transferase family protein YP_005238142.1 2241492 R 588858 CDS YP_005238143.1 378450784 complement(2242712..2243185) 1 NC_016856.1 similar to Escherichia coli GDP-mannose mannosyl hydrolase (AAC75112.1); in colanic acid biosynthesis; GDP-mannose mannosyl hydrolase 2243185 wcaH 588858002703 wcaH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S GDP-mannose mannosyl hydrolase YP_005238143.1 2242712 R 588858 CDS YP_005238144.1 378450785 complement(2243188..2244153) 1 NC_016856.1 similar to Escherichia coli putative nucleotide di-P-sugar epimerase/dehydratase (AAC75113.1); GDP fucose synthetase in colanic acid biosyntheis; GDP-fucose synthetase 2244153 wcaG 588858002704 wcaG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S GDP-fucose synthetase YP_005238144.1 2243188 R 588858 CDS YP_005238145.1 378450786 complement(2244156..2245277) 1 NC_016856.1 similar to Escherichia coli GDP-D-mannose dehydratase (AAC75114.1); colanic acid gene cluster; GDP-D-mannose dehydratase 2245277 gmd 588858002705 gmd Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S GDP-D-mannose dehydratase YP_005238145.1 2244156 R 588858 CDS YP_005238146.1 378450787 complement(2245301..2245855) 1 NC_016856.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); putative colanic acid biosynthesis acetyltransferase WcaF 2245855 wcaF 588858002706 wcaF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative colanic acid biosynthesis acetyltransferase WcaF YP_005238146.1 2245301 R 588858 CDS YP_005238147.1 378450788 complement(2245871..2246617) 1 NC_016856.1 similar to Escherichia coli putative colanic acid biosynthesis glycosyl transferase (AAC75116.1); involved in colanic acid biosynthesis; glycosyl transferase family protein 2246617 wcaE 588858002707 wcaE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycosyl transferase family protein YP_005238147.1 2245871 R 588858 CDS YP_005238148.1 378450789 complement(2246630..2247844) 1 NC_016856.1 essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; putative colanic acid biosynthesis protein 2247844 wcaD 588858002708 wcaD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative colanic acid biosynthesis protein YP_005238148.1 2246630 R 588858 CDS YP_005238149.1 378450790 complement(2247819..2249036) 1 NC_016856.1 similar to Escherichia coli putative glycosyl transferase (AAC75118.1); involved in colanic acid biosynthesis; glycosyl transferase family protein 2249036 wcaC 588858002709 wcaC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycosyl transferase family protein YP_005238149.1 2247819 R 588858 CDS YP_005238150.1 378450791 complement(2249033..2249521) 1 NC_016856.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium; putative colanic acid biosynthesis acetyltransferase WcaB 2249521 wcaB 588858002710 wcaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative colanic acid biosynthesis acetyltransferase WcaB YP_005238150.1 2249033 R 588858 CDS YP_005238151.1 378450792 complement(2249524..2250366) 1 NC_016856.1 similar to Escherichia coli putative regulator (AAC75120.1); involved in colanic acid biosynthesis; glycosyl transferase family protein 2250366 wcaA 588858002711 wcaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycosyl transferase family protein YP_005238151.1 2249524 R 588858 CDS YP_005238152.1 378450793 complement(2250453..2252612) 1 NC_016856.1 Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); tyrosine kinase 2252612 wzc 588858002712 wzc Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tyrosine kinase YP_005238152.1 2250453 R 588858 CDS YP_005238153.1 378450794 complement(2252609..2253058) 1 NC_016856.1 Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis; tyrosine phosphatase 2253058 wzb 588858002713 wzb Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tyrosine phosphatase YP_005238153.1 2252609 R 588858 CDS YP_005238154.1 378450795 complement(2253064..2254203) 1 NC_016856.1 similar to Escherichia coli putative polysaccharide export protein (AAC75123.1); putative outer membrane polysaccharide export protein 2254203 wza 588858002714 wza Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane polysaccharide export protein YP_005238154.1 2253064 R 588858 CDS YP_005238155.1 378450796 2254277..2254522 1 NC_016856.1 hypothetical protein 2254522 588858002715 STM14_2614 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238155.1 2254277 D 588858 CDS YP_005238156.1 378450797 2254878..2256458 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC75124.1); putative inner membrane protein 2256458 yegH 588858002716 yegH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238156.1 2254878 D 588858 CDS YP_005238157.1 378450798 complement(2256544..2258400) 1 NC_016856.1 YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs; putative assembly protein 2258400 asmA 588858002717 asmA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative assembly protein YP_005238157.1 2256544 R 588858 CDS YP_005238158.1 378450799 complement(2258439..2259020) 1 NC_016856.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 2259020 dcd 588858002718 dcd Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S deoxycytidine triphosphate deaminase YP_005238158.1 2258439 R 588858 CDS YP_005238159.1 378450800 complement(2259111..2259752) 1 NC_016856.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2259752 udk 588858002719 udk Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S uridine kinase YP_005238159.1 2259111 R 588858 CDS YP_005238160.1 378450801 complement(2259828..2259998) 1 NC_016856.1 hypothetical protein 2259998 588858002720 STM14_2619 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238160.1 2259828 R 588858 CDS YP_005238161.1 378450802 2260083..2263073 1 NC_016856.1 similar to Escherichia coli putative sensor-type protein (AAC75128.1); contains PAS/PAC domain; domain 1/2; diguanylate cyclase 2263073 yegE 588858002721 yegE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S diguanylate cyclase YP_005238161.1 2260083 D 588858 CDS YP_005238162.2 410023198 complement(2263041..2263910) 1 NC_016856.1 inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine; 3-methyladenine DNA glycosylase 2263910 alkA 588858002722 alkA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-methyladenine DNA glycosylase YP_005238162.2 2263041 R 588858 CDS YP_005238163.1 378450804 2264044..2265396 1 NC_016856.1 similar to Escherichia coli putative heat shock protein (AAC75130.1); Hsp70/DnaK; putative chaperone 2265396 yegD 588858002723 yegD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative chaperone YP_005238163.1 2264044 D 588858 CDS YP_005238164.1 378450805 complement(2265633..2265749) 1 NC_016856.1 hypothetical protein 2265749 588858002724 STM14_2623 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238164.1 2265633 R 588858 CDS YP_005238165.1 378450806 2265837..2267078 1 NC_016856.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtA 2267078 588858002725 STM14_2624 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multidrug efflux system subunit MdtA YP_005238165.1 2265837 D 588858 CDS YP_005238166.1 378450807 2267078..2270200 1 NC_016856.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtB 2270200 yegN 588858002726 yegN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multidrug efflux system subunit MdtB YP_005238166.1 2267078 D 588858 CDS YP_005238167.1 378450808 2270201..2273281 1 NC_016856.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtC 2273281 yegO 588858002727 yegO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multidrug efflux system subunit MdtC YP_005238167.1 2270201 D 588858 CDS YP_005238168.1 378450809 2273278..2274690 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC75138.1); MFS family; multidrug efflux system protein MdtE 2274690 yegB 588858002728 yegB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multidrug efflux system protein MdtE YP_005238168.1 2273278 D 588858 CDS YP_005238169.1 378450810 2274690..2276093 1 NC_016856.1 similar to Escherichia coli sensor protein for BaeR (AAC75139.1); in two-component regulatory system; signal transduction histidine-protein kinase BaeS 2276093 baeS 588858002729 baeS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S signal transduction histidine-protein kinase BaeS YP_005238169.1 2274690 D 588858 CDS YP_005238170.1 378450811 2276090..2276812 1 NC_016856.1 response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport; DNA-binding transcriptional regulator BaeR 2276812 baeR 588858002730 baeR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator BaeR YP_005238170.1 2276090 D 588858 CDS YP_005238171.1 378450812 2277399..2278283 1 NC_016856.1 putative cytoplasmic protein 2278283 588858002732 STM14_2631 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238171.1 2277399 D 588858 CDS YP_005238172.1 378450813 2278283..2278999 1 NC_016856.1 putative inner membrane protein 2278999 588858002733 STM14_2632 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238172.1 2278283 D 588858 CDS YP_005238173.1 378450814 2279010..2281121 1 NC_016856.1 putative inner membrane protein 2281121 588858002734 STM14_2633 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238173.1 2279010 D 588858 CDS YP_005238174.1 378450815 2281237..2282598 1 NC_016856.1 putative protease 2282598 yegQ 588858002735 yegQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative protease YP_005238174.1 2281237 D 588858 CDS YP_005238175.1 378450816 complement(2282708..2282821) 1 NC_016856.1 hypothetical protein 2282821 588858002736 STM14_2635 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238175.1 2282708 R 588858 CDS YP_005238176.1 378450817 complement(2284131..2284547) 1 NC_016856.1 putative cytoplasmic protein 2284547 588858002738 STM14_2637 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238176.1 2284131 R 588858 CDS YP_005238177.1 378450818 complement(2284669..2285004) 1 NC_016856.1 putative inner membrane protein 2285004 588858002739 STM14_2638 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238177.1 2284669 R 588858 CDS YP_005238178.1 378450819 2285114..2285233 1 NC_016856.1 hypothetical protein 2285233 588858002740 STM14_2639 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238178.1 2285114 D 588858 CDS YP_005238179.1 378450820 complement(2285366..2285482) 1 NC_016856.1 similar to hypothetical proteins from Salmonella spp.; hypothetical protein 2285482 588858002741 STM14_2640 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238179.1 2285366 R 588858 CDS YP_005238180.1 378450821 2285566..2286465 1 NC_016856.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 2286465 yegS 588858002742 yegS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipid kinase YP_005238180.1 2285566 D 588858 CDS YP_005238181.1 378450822 complement(2286518..2287570) 1 NC_016856.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase 2287570 fbaB 588858002743 fbaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fructose-bisphosphate aldolase YP_005238181.1 2286518 R 588858 CDS YP_005238182.1 378450823 2287824..2289095 1 NC_016856.1 similar to Escherichia coli putative nucleoside permease protein (AAC75159.1); MFS family; putative transport protein 2289095 yegT 588858002744 yegT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005238182.1 2287824 D 588858 CDS YP_005238183.1 378450824 2289092..2290096 1 NC_016856.1 putative glycohydrolase 2290096 yegU 588858002745 yegU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycohydrolase YP_005238183.1 2289092 D 588858 CDS YP_005238184.1 378450825 2290093..2291058 1 NC_016856.1 similar to Escherichia coli putative kinase (AAC75161.1); putative sugar kinase 2291058 yegV 588858002746 yegV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sugar kinase YP_005238184.1 2290093 D 588858 CDS YP_005238185.1 378450826 complement(2291032..2291778) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator (AAC75162.1); GntR family; putative regulatory protein 2291778 yegW 588858002747 yegW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005238185.1 2291032 R 588858 CDS YP_005238186.1 378450827 complement(2291814..2292614) 1 NC_016856.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 2292614 thiD 588858002748 thiD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphomethylpyrimidine kinase YP_005238186.1 2291814 R 588858 CDS YP_005238187.1 378450828 complement(2292601..2293398) 1 NC_016856.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 2293398 thiM 588858002749 thiM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydroxyethylthiazole kinase YP_005238187.1 2292601 R 588858 CDS YP_005238188.1 378450829 complement(2293497..2293682) 1 NC_016856.1 hypothetical protein 2293682 588858002750 STM14_2649 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238188.1 2293497 R 588858 CDS YP_005238189.1 378450830 2293808..2294122 1 NC_016856.1 hypothetical protein 2294122 588858002751 STM14_2650 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238189.1 2293808 D 588858 CDS YP_005238190.1 378450831 complement(2294185..2294343) 1 NC_016856.1 hypothetical protein 2294343 588858002752 STM14_2651 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238190.1 2294185 R 588858 CDS YP_005238191.1 378450832 complement(2294385..2295392) 1 NC_016856.1 similar to Escherichia coli putative type-1 fimbrial protein (AAC75169.1); putative outer membrane lipoprotein 2295392 stcD 588858002753 stcD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005238191.1 2294385 R 588858 CDS YP_005238192.1 378450833 complement(2295408..2297897) 1 NC_016856.1 similar to Escherichia coli putative outer membrane protein (AAC75170.1); putative outer membrane protein 2297897 stcC 588858002754 stcC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005238192.1 2295408 R 588858 CDS YP_005238193.1 378450834 complement(2297911..2298594) 1 NC_016856.1 similar to Escherichia coli putative chaperone (AAC75171.1); putative periplasmic chaperone protein 2298594 stcB 588858002755 stcB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative periplasmic chaperone protein YP_005238193.1 2297911 R 588858 CDS YP_005238194.1 378450835 complement(2298650..2299180) 1 NC_016856.1 similar to Escherichia coli putative fimbrial-like protein (AAC75172.1); putative fimbrial-like protein 2299180 stcA 588858002756 stcA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial-like protein YP_005238194.1 2298650 R 588858 CDS YP_005238195.1 378450836 complement(2299459..2299740) 1 NC_016856.1 putative outer membrane protein 2299740 yehE 588858002757 yehE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005238195.1 2299459 R 588858 CDS YP_005238196.1 378450837 complement(2300018..2301127) 1 NC_016856.1 similar to Escherichia coli putative ATPase (AAC75174.1); putative ATPase 2301127 mrp 588858002758 mrp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ATPase YP_005238196.1 2300018 R 588858 CDS YP_005238197.1 378450838 2301292..2303325 1 NC_016856.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2303325 metG 588858002759 metG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S methionyl-tRNA synthetase YP_005238197.1 2301292 D 588858 CDS YP_005238198.1 378450839 2303566..2304024 1 NC_016856.1 putative lipoprotein 2304024 yehR 588858002760 yehR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative lipoprotein YP_005238198.1 2303566 D 588858 CDS YP_005238199.1 378450840 2304196..2304726 1 NC_016856.1 hypothetical 16.9 kDa lipoprotein precursor; hypothetical protein 2304726 588858002761 STM14_2660 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238199.1 2304196 D 588858 CDS YP_005238200.1 378450841 complement(2304783..2305250) 1 NC_016856.1 putative cytoplasmic protein 2305250 yehS 588858002762 yehS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238200.1 2304783 R 588858 CDS YP_005238201.1 378450842 complement(2305297..2306016) 1 NC_016856.1 unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT 2306016 yehT 588858002763 yehT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative two-component response-regulatory protein YehT YP_005238201.1 2305297 R 588858 CDS YP_005238202.1 378450843 complement(2306013..2307800) 1 NC_016856.1 similar to Escherichia coli putative 2-component sensor protein (AAC75187.1); putative sensor kinase 2307800 yehU 588858002764 yehU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sensor kinase YP_005238202.1 2306013 R 588858 CDS YP_005238203.1 378450844 2307921..2308652 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator (AAC75188.1); MerR family; putative transcriptional repressor 2308652 yehV 588858002765 yehV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional repressor YP_005238203.1 2307921 D 588858 CDS YP_005238204.1 378450845 2308712..2308819 1 NC_016856.1 hypothetical protein 2308819 588858002766 STM14_2665 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238204.1 2308712 D 588858 CDS YP_005238205.1 378450846 complement(2308800..2309531) 1 NC_016856.1 similar to Escherichia coli putative transport system permease protein (AAC75189.1); putative ABC-type proline/glycine betaine transport system permease component 2309531 yehW 588858002767 yehW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type proline/glycine betaine transport system permease component YP_005238205.1 2308800 R 588858 CDS YP_005238206.1 378450847 complement(2309515..2310462) 1 NC_016856.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC75190.1); putative ABC-type proline/glycine betaine transport system ATPase component 2310462 yehX 588858002768 yehX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type proline/glycine betaine transport system ATPase component YP_005238206.1 2309515 R 588858 CDS YP_005238207.1 378450848 complement(2310455..2311624) 1 NC_016856.1 similar to Escherichia coli putative transport system permease protein (AAC75191.1); putative ABC-type proline/glycine betaine transport system permease component 2311624 yehY 588858002769 yehY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type proline/glycine betaine transport system permease component YP_005238207.1 2310455 R 588858 CDS YP_005238208.1 378450849 complement(2311628..2312545) 1 NC_016856.1 similar to Escherichia coli putative transport system permease protein (AAC75192.1); putative ABC superfamily binding protein; possibly glycine betaine choline transport for osmoprotection; putative transport protein 2312545 yehZ 588858002770 yehZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005238208.1 2311628 R 588858 CDS YP_005238209.1 378450850 complement(2312726..2315023) 1 NC_016856.1 periplasmic beta-glucosidase precursor (SW:BGLX_SALTY); periplasmic beta-D-glucoside glucohydrolase 2315023 bglX 588858002771 bglX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S periplasmic beta-D-glucoside glucohydrolase YP_005238209.1 2312726 R 588858 CDS YP_005238210.1 378450851 complement(2315124..2315237) 1 NC_016856.1 hypothetical protein 2315237 588858002772 STM14_2671 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238210.1 2315124 R 588858 CDS YP_005238211.1 378450852 2315290..2317020 1 NC_016856.1 component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 2317020 dld 588858002773 dld Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-lactate dehydrogenase YP_005238211.1 2315290 D 588858 CDS YP_005238212.1 378450853 complement(2317078..2318025) 1 NC_016856.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 2318025 pbpG 588858002774 pbpG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-alanyl-D-alanine endopeptidase YP_005238212.1 2317078 R 588858 CDS YP_005238213.1 378450854 complement(2317916..2318191) 1 NC_016856.1 hypothetical protein 2318191 588858002775 STM14_2674 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238213.1 2317916 R 588858 CDS YP_005238214.1 378450855 complement(2318191..2318778) 1 NC_016856.1 putative transport protein 2318778 yohC 588858002776 yohC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005238214.1 2318191 R 588858 CDS YP_005238215.1 378450856 2318810..2318917 1 NC_016856.1 hypothetical protein 2318917 588858002777 STM14_2676 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238215.1 2318810 D 588858 CDS YP_005238216.1 378450857 2318910..2319506 1 NC_016856.1 DedA family; hypothetical protein 2319506 yohD 588858002778 yohD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238216.1 2318910 D 588858 CDS YP_005238217.1 378450858 complement(2319555..2320316) 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC75198.1); acetoin dehydrogenase 2320316 yohF 588858002779 yohF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acetoin dehydrogenase YP_005238217.1 2319555 R 588858 CDS YP_005238218.1 378450859 complement(2320382..2321818) 1 NC_016856.1 may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; multidrug resistance outer membrane protein MdtQ 2321818 yohG 588858002780 yohG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multidrug resistance outer membrane protein MdtQ YP_005238218.1 2320382 R 588858 CDS YP_005238219.1 378450860 2322009..2322206 1 NC_016856.1 hypothetical protein 2322206 588858002781 STM14_2680 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238219.1 2322009 D 588858 CDS YP_005238220.1 378450861 complement(2322277..2323215) 1 NC_016856.1 similar to Escherichia coli putative nitrogen regulatory protein (AAC75201.1); tRNA-dihydrouridine synthase C 2323215 yohI 588858002782 yohI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tRNA-dihydrouridine synthase C YP_005238220.1 2322277 R 588858 CDS YP_005238221.1 378450862 complement(2323324..2324517) 1 NC_016856.1 catalyzes the formation of catechol from salicylate; salicylate hydroxylase 2324517 588858002783 STM14_2682 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S salicylate hydroxylase YP_005238221.1 2323324 R 588858 CDS YP_005238222.1 378450863 complement(2324532..2325176) 1 NC_016856.1 similar to Escherichia coli regulator of transcription; stringent starvation protein A (AAC76261.1); putative glutathione S-transferase 2325176 588858002784 STM14_2683 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glutathione S-transferase YP_005238222.1 2324532 R 588858 CDS YP_005238223.1 378450864 complement(2325185..2325886) 1 NC_016856.1 similar to Escherichia coli putative isomerase (AAC74264.1); putative flutathione S-transferase 2325886 588858002785 STM14_2684 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative flutathione S-transferase YP_005238223.1 2325185 R 588858 CDS YP_005238224.1 378450865 complement(2325902..2326939) 1 NC_016856.1 putative 1,2-dioxygenase 2326939 588858002786 STM14_2685 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative 1,2-dioxygenase YP_005238224.1 2325902 R 588858 CDS YP_005238225.1 378450866 complement(2326951..2328309) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC73456.1); putative sugar transporter 2328309 588858002787 STM14_2686 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sugar transporter YP_005238225.1 2326951 R 588858 CDS YP_005238226.1 378450867 2328435..2329343 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC74504.1); LysR family; putative transcriptional regulator 2329343 588858002788 STM14_2687 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005238226.1 2328435 D 588858 CDS YP_005238227.1 378450868 2329475..2329873 1 NC_016856.1 hypothetical protein 2329873 yohJ 588858002789 yohJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238227.1 2329475 D 588858 CDS YP_005238228.1 378450869 2329870..2330565 1 NC_016856.1 similar to Escherichia coli putative seritonin transporter (AAC75203.1); hypothetical protein 2330565 yohK 588858002790 yohK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238228.1 2329870 D 588858 CDS YP_005238229.1 378450870 2330719..2331603 1 NC_016856.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2331603 cdd 588858002791 cdd Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytidine deaminase YP_005238229.1 2330719 D 588858 CDS YP_005238230.1 378450871 2331780..2332499 1 NC_016856.1 similar to Escherichia coli vancomycin sensitivity (AAC75205.1); hypothetical protein 2332499 sanA 588858002792 sanA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238230.1 2331780 D 588858 CDS YP_005238231.1 378450872 2332496..2332741 1 NC_016856.1 putative inner membrane protein 2332741 588858002793 STM14_2692 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238231.1 2332496 D 588858 CDS YP_005238232.1 378450873 2332946..2334187 1 NC_016856.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 2334187 588858002794 STM14_2693 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative oxidoreductase YP_005238232.1 2332946 D 588858 CDS YP_005238233.1 378450874 2334181..2335416 1 NC_016856.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 2335416 yeiA 588858002795 yeiA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dihydropyrimidine dehydrogenase YP_005238233.1 2334181 D 588858 CDS YP_005238234.1 378450875 complement(2335491..2336501) 1 NC_016856.1 ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane protein 2336501 mglC 588858002796 mglC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S beta-methylgalactoside transporter inner membrane protein YP_005238234.1 2335491 R 588858 CDS YP_005238235.1 378450876 complement(2336517..2338037) 1 NC_016856.1 with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein 2338037 mglA 588858002797 mglA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S galactose/methyl galaxtoside transporter ATP-binding protein YP_005238235.1 2336517 R 588858 CDS YP_005238236.1 378450877 2338065..2338184 1 NC_016856.1 hypothetical protein 2338184 588858002798 STM14_2697 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238236.1 2338065 D 588858 CDS YP_005238237.1 378450878 complement(2338171..2339169) 1 NC_016856.1 D-galactose-binding periplasmic protein precursor; GDP; D-galactose/D-glucose binding protein; GGBP (SW:DGAL_SALTY); ABC superfamily periplasmic protein; galactose transport protein 2339169 mglB 588858002799 mglB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S galactose transport protein YP_005238237.1 2338171 R 588858 CDS YP_005238238.1 378450879 2339344..2339451 1 NC_016856.1 hypothetical protein 2339451 588858002800 STM14_2699 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238238.1 2339344 D 588858 CDS YP_005238239.1 378450880 complement(2339668..2340690) 1 NC_016856.1 negative regulator of the mglBAC operon for galactose utilization; DNA-binding transcriptional regulator GalS 2340690 galS 588858002801 galS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator GalS YP_005238239.1 2339668 R 588858 CDS YP_005238240.1 378450881 2340683..2340847 1 NC_016856.1 hypothetical protein 2340847 588858002802 STM14_2701 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238240.1 2340683 D 588858 CDS YP_005238241.1 378450882 complement(2340840..2341982) 1 NC_016856.1 hypothetical protein 2341982 yeiB 588858002803 yeiB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238241.1 2340840 R 588858 CDS YP_005238242.1 378450883 complement(2341997..2342665) 1 NC_016856.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2342665 folE 588858002804 folE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S GTP cyclohydrolase I YP_005238242.1 2341997 R 588858 CDS YP_005238243.1 378450884 complement(2342649..2342762) 1 NC_016856.1 hypothetical protein 2342762 588858002805 STM14_2704 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238243.1 2342649 R 588858 CDS YP_005238244.1 378450885 complement(2342720..2342848) 1 NC_016856.1 hypothetical protein 2342848 588858002806 STM14_2705 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238244.1 2342720 R 588858 CDS YP_005238245.1 378450886 2342834..2343067 1 NC_016856.1 hypothetical protein 2343067 588858002807 STM14_2706 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238245.1 2342834 D 588858 CDS YP_005238246.1 378450887 2342995..2343852 1 NC_016856.1 similar to Escherichia coli putative esterase (AAC75215.1); S-formylglutathione hydrolase 2343852 fghA 588858002808 fghA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S S-formylglutathione hydrolase YP_005238246.1 2342995 D 588858 CDS YP_005238247.1 378450888 complement(2343841..2344230) 1 NC_016856.1 putative transcriptional regulator 2344230 588858002809 STM14_2708 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005238247.1 2343841 R 588858 CDS YP_005238248.1 378450889 complement(2344235..2345602) 1 NC_016856.1 similar to Escherichia coli L-serine deaminase (AAC74884.1); putative L-serine dehydratase 2345602 588858002810 STM14_2709 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative L-serine dehydratase YP_005238248.1 2344235 R 588858 CDS YP_005238249.1 378450890 complement(2345635..2345787) 1 NC_016856.1 hypothetical protein 2345787 588858002811 STM14_2710 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238249.1 2345635 R 588858 CDS YP_005238250.1 378450891 2345819..2346706 1 NC_016856.1 similar to Escherichia coli 3-phosphoserine phosphatase (AAC77341.1); putative phosphoserine phosphatase 2346706 588858002812 STM14_2711 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phosphoserine phosphatase YP_005238250.1 2345819 D 588858 CDS YP_005238251.1 378450892 2346739..2348061 1 NC_016856.1 similar to Escherichia coli regulator of uhpT (AAC76690.1); putative regulatory protein 2348061 588858002813 STM14_2712 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005238251.1 2346739 D 588858 CDS YP_005238252.1 378450893 complement(2348105..2350096) 1 NC_016856.1 Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein; colicin I receptor 2350096 cirA 588858002814 cirA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S colicin I receptor YP_005238252.1 2348105 R 588858 CDS YP_005238253.1 378450894 2349999..2350304 1 NC_016856.1 hypothetical protein 2350304 588858002815 STM14_2714 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238253.1 2349999 D 588858 CDS YP_005238254.1 378450895 complement(2350441..2351910) 1 NC_016856.1 similar to Escherichia coli lysine-specific permease (AAC75217.1); APC family; lysine transporter 2351910 lysP 588858002816 lysP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lysine transporter YP_005238254.1 2350441 R 588858 CDS YP_005238255.1 378450896 complement(2351963..2352097) 1 NC_016856.1 hypothetical protein 2352097 588858002817 STM14_2716 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238255.1 2351963 R 588858 CDS YP_005238256.1 378450897 complement(2352100..2352963) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75218.1); LysR family; putative DNA-binding transcriptional regulator 2352963 yeiE 588858002818 yeiE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA-binding transcriptional regulator YP_005238256.1 2352100 R 588858 CDS YP_005238257.1 378450898 complement(2352991..2353110) 1 NC_016856.1 hypothetical protein 2353110 588858002819 STM14_2718 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238257.1 2352991 R 588858 CDS YP_005238258.1 378450899 2353084..2354133 1 NC_016856.1 putative inner membrane protein 2354133 yeiH 588858002820 yeiH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238258.1 2353084 D 588858 CDS YP_005238259.1 378450900 2354212..2355069 1 NC_016856.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2355069 nfo 588858002821 nfo Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S endonuclease IV YP_005238259.1 2354212 D 588858 CDS YP_005238260.1 378450901 complement(2355134..2356822) 1 NC_016856.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system fructose-specific transporter subunit IIBC 2356822 fruA 588858002822 fruA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S PTS system fructose-specific transporter subunit IIBC YP_005238260.1 2355134 R 588858 CDS YP_005238261.1 378450902 complement(2356839..2357777) 1 NC_016856.1 converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; 1-phosphofructokinase 2357777 fruK 588858002823 fruK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 1-phosphofructokinase YP_005238261.1 2356839 R 588858 CDS YP_005238262.1 378450903 complement(2357777..2358907) 1 NC_016856.1 phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr; bifunctional fructose-specific PTS IIA/HPr protein 2358907 fruF 588858002824 fruF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional fructose-specific PTS IIA/HPr protein YP_005238262.1 2357777 R 588858 CDS YP_005238263.1 378450904 2358928..2359059 1 NC_016856.1 hypothetical protein 2359059 588858002825 STM14_2724 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238263.1 2358928 D 588858 CDS YP_005238264.1 378450905 2359144..2359266 1 NC_016856.1 hypothetical protein 2359266 588858002826 STM14_2725 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238264.1 2359144 D 588858 CDS YP_005238265.1 378450906 complement(2359149..2359277) 1 NC_016856.1 hypothetical protein 2359277 588858002827 STM14_2726 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238265.1 2359149 R 588858 CDS YP_005238266.1 378450907 2359276..2360457 1 NC_016856.1 sugar efflux transporter B (SW:SETB_SALTY); proton efflux pump 2360457 setB 588858002828 setB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S proton efflux pump YP_005238266.1 2359276 D 588858 CDS YP_005238267.1 378450908 complement(2360522..2361187) 1 NC_016856.1 putative inner membrane protein 2361187 588858002829 STM14_2728 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238267.1 2360522 R 588858 CDS YP_005238268.1 378450909 complement(2361189..2361311) 1 NC_016856.1 putative inner membrane protein 2361311 588858002830 STM14_2729 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238268.1 2361189 R 588858 CDS YP_005238269.1 378450910 complement(2361472..2361576) 1 NC_016856.1 hypothetical protein 2361576 588858002831 STM14_2730 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238269.1 2361472 R 588858 CDS YP_005238270.1 378450911 complement(2361699..2361953) 1 NC_016856.1 hypothetical protein 2361953 588858002832 STM14_2731 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238270.1 2361699 R 588858 CDS YP_005238271.2 410023199 2362277..2362849 1 NC_016856.1 Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P 2362849 yeiP 588858002834 yeiP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S elongation factor P YP_005238271.2 2362277 D 588858 CDS YP_005238272.1 378450913 2363062..2364048 1 NC_016856.1 putative cobalamin biosynthetic protein 2364048 yeiR 588858002835 yeiR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cobalamin biosynthetic protein YP_005238272.1 2363062 D 588858 CDS YP_005238273.1 378450914 2364078..2364797 1 NC_016856.1 putative permease 2364797 yeiU 588858002836 yeiU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005238273.1 2364078 D 588858 CDS YP_005238274.1 378450915 complement(2364975..2365205) 1 NC_016856.1 hypothetical protein 2365205 588858002837 STM14_2736 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238274.1 2364975 R 588858 CDS YP_005238275.1 378450916 2365211..2365783 1 NC_016856.1 by similarity, Spr seems to have peptidase activity; involved in thermoresistance; putative outer membrane lipoprotein 2365783 spr 588858002838 spr Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005238275.1 2365211 D 588858 CDS YP_005238276.1 378450917 2365897..2366040 1 NC_016856.1 hypothetical protein 2366040 588858002839 STM14_2738 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238276.1 2365897 D 588858 CDS YP_005238277.1 378450918 2366109..2367665 1 NC_016856.1 involved in resistance to lambda and N4 phages; hypothetical protein 2367665 rtn 588858002840 rtn Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238277.1 2366109 D 588858 CDS YP_005238278.1 378450919 2367772..2369577 1 NC_016856.1 putative ABC transporter periplasmic binding protein 2369577 yejA 588858002841 yejA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter periplasmic binding protein YP_005238278.1 2367772 D 588858 CDS YP_005238279.1 378450920 2369587..2370681 1 NC_016856.1 similar to Escherichia coli putative transport system permease protein (AAC75239.1); putative ABC-type dipeptide/oligopeptide/nickel transport system permease 2370681 yejB 588858002842 yejB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type dipeptide/oligopeptide/nickel transport system permease YP_005238279.1 2369587 D 588858 CDS YP_005238280.1 378450921 2370681..2371706 1 NC_016856.1 similar to Escherichia coli putative transport system permease protein (AAC75240.1); putative ABC-type dipeptide/oligopeptide/nickel transport system permease component 2371706 yejE 588858002843 yejE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type dipeptide/oligopeptide/nickel transport system permease component YP_005238280.1 2370681 D 588858 CDS YP_005238281.1 378450922 2371708..2373297 1 NC_016856.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC75241.1); contains duplicated ATPase domain; ABC transporter ATP-binding protein 2373297 yejF 588858002844 yejF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ABC transporter ATP-binding protein YP_005238281.1 2371708 D 588858 CDS YP_005238282.1 378450923 complement(2373301..2373645) 1 NC_016856.1 hypothetical protein 2373645 yejG 588858002845 yejG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238282.1 2373301 R 588858 CDS YP_005238283.1 378450924 complement(2373810..2374100) 1 NC_016856.1 bicyclomycin/multidrug efflux system protein 2374100 588858002846 STM14_2745 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bicyclomycin/multidrug efflux system protein YP_005238283.1 2373810 R 588858 CDS YP_005238284.1 378450925 complement(2374036..2375226) 1 NC_016856.1 Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system protein 2375226 bcr 588858002847 bcr Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bicyclomycin/multidrug efflux system protein YP_005238284.1 2374036 R 588858 CDS YP_005238285.1 378450926 complement(2375254..2375949) 1 NC_016856.1 catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; 16S rRNA pseudouridylate synthase A 2375949 rsuA 588858002848 rsuA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 16S rRNA pseudouridylate synthase A YP_005238285.1 2375254 R 588858 CDS YP_005238286.1 378450927 2376101..2377861 1 NC_016856.1 similar to Escherichia coli putative ATP-dependent helicase (AAC75245.1); putative ATP-dependent helicase 2377861 yejH 588858002849 yejH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ATP-dependent helicase YP_005238286.1 2376101 D 588858 CDS YP_005238287.1 378450928 2377986..2378270 1 NC_016856.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2378270 rplY 588858002850 rplY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L25 YP_005238287.1 2377986 D 588858 CDS YP_005238288.1 378450929 complement(2378246..2378392) 1 NC_016856.1 hypothetical protein 2378392 588858002851 STM14_2750 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238288.1 2378246 R 588858 CDS YP_005238289.1 378450930 complement(2378379..2378999) 1 NC_016856.1 putative inner membrane protein 2378999 588858002852 STM14_2751 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238289.1 2378379 R 588858 CDS YP_005238290.1 378450931 complement(2379027..2380034) 1 NC_016856.1 present in spermidine nucleoids; nucleoid-associated protein NdpA 2380034 yejK 588858002853 yejK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nucleoid-associated protein NdpA YP_005238290.1 2379027 R 588858 CDS YP_005238291.1 378450932 2380214..2380441 1 NC_016856.1 hypothetical protein 2380441 yejL 588858002854 yejL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238291.1 2380214 D 588858 CDS YP_005238292.1 378450933 2380473..2382233 1 NC_016856.1 hypothetical protein in rplY-proL intergenic region (SW:YEJM_SALTY); alkaline phosphatase superfamily; putative hydrolase 2382233 yejM 588858002855 yejM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrolase YP_005238292.1 2380473 D 588858 CDS YP_005238293.1 378450934 complement(2382514..2382984) 1 NC_016856.1 putative peptidase UmuD; similar to Escherichia coli SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC (AAC74267.1); DNA polymerase V subunit 2382984 588858002857 STM14_2756 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA polymerase V subunit YP_005238293.1 2382514 R 588858 CDS YP_005238294.1 378450935 2383045..2383335 1 NC_016856.1 similar to virulence protein MsgA (SW:MSGA_SALTY); similar to STM1241; ssrB-regulated factor; virulence protein 2383335 588858002858 STM14_2757 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S virulence protein YP_005238294.1 2383045 D 588858 CDS YP_005238295.1 378450936 2383683..2385512 1 NC_016856.1 O-antigen five; acetylation of the O-antigen (LPS); O-antigen acetylase 2385512 oafA 588858002859 oafA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S O-antigen acetylase YP_005238295.1 2383683 D 588858 CDS YP_005238296.1 378450937 complement(2385566..2386009) 1 NC_016856.1 putative cytoplasmic protein 2386009 588858002860 STM14_2759 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238296.1 2385566 R 588858 CDS YP_005238297.1 378450938 complement(2386387..2386914) 1 NC_016856.1 putative phage tail fiber assembly protein 2386914 588858002861 STM14_2760 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phage tail fiber assembly protein YP_005238297.1 2386387 R 588858 CDS YP_005238298.1 378450939 complement(2386917..2388158) 1 NC_016856.1 hypothetical protein 2388158 588858002862 STM14_2761 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238298.1 2386917 R 588858 CDS YP_005238299.1 378450940 complement(2388219..2388737) 1 NC_016856.1 hypothetical protein 2388737 588858002863 STM14_2762 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238299.1 2388219 R 588858 CDS YP_005238300.1 378450941 complement(2388751..2389080) 1 NC_016856.1 putative inner membrane protein 2389080 588858002864 STM14_2763 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238300.1 2388751 R 588858 CDS YP_005238301.1 378450942 complement(2389094..2389207) 1 NC_016856.1 hypothetical protein 2389207 588858002865 STM14_2764 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238301.1 2389094 R 588858 CDS YP_005238302.1 378450943 2389377..2390708 1 NC_016856.1 hypothetical protein 2390708 588858002866 STM14_2765 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238302.1 2389377 D 588858 CDS YP_005238303.2 410023200 complement(2390737..2391102) 1 NC_016856.1 similar to antiterminator protein Q of phage P5; putative phage antiterminator 2391102 588858002867 STM14_2766 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phage antiterminator YP_005238303.2 2390737 R 588858 CDS YP_005238304.1 378450945 complement(2391120..2392109) 1 NC_016856.1 putative cytoplasmic protein 2392109 588858002868 STM14_2767 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238304.1 2391120 R 588858 CDS YP_005238305.1 378450946 complement(2392117..2392347) 1 NC_016856.1 KilA-N domain protein 2392347 588858002869 STM14_2768 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S KilA-N domain protein YP_005238305.1 2392117 R 588858 CDS YP_005238306.1 378450947 complement(2392438..2394804) 1 NC_016856.1 induced by the SPI-2 regulator ssrA/B; secreted by SPI-2; hypothetical protein 2394804 sspH2 588858002870 sspH2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238306.1 2392438 R 588858 CDS YP_005238307.1 378450948 complement(2394973..2395176) 1 NC_016856.1 putative phage tail fiber protein 2395176 588858002871 STM14_2770 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phage tail fiber protein YP_005238307.1 2394973 R 588858 CDS YP_005238308.1 378450949 complement(2395473..2396264) 1 NC_016856.1 similar to Escherichia coli putative membrane protein (AAC74454.1); putative tail fiber protein of phage 2396264 588858002872 STM14_2771 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative tail fiber protein of phage YP_005238308.1 2395473 R 588858 CDS YP_005238309.1 378450950 2396453..2396770 1 NC_016856.1 similar to virulence protein MsgA (SW:MSGA_SALTY); similar to STM1241; virulence protein 2396770 588858002873 STM14_2772 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S virulence protein YP_005238309.1 2396453 D 588858 CDS YP_005238310.1 378450951 complement(2396962..2397525) 1 NC_016856.1 putative outer membrane protein 2397525 588858002874 STM14_2773 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005238310.1 2396962 R 588858 CDS YP_005238311.1 378450952 2397715..2397861 1 NC_016856.1 hypothetical protein 2397861 588858002875 STM14_2774 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238311.1 2397715 D 588858 CDS YP_005238312.1 378450953 2398255..2398902 1 NC_016856.1 nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; transcriptional regulator NarP 2398902 narP 588858002876 narP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator NarP YP_005238312.1 2398255 D 588858 CDS YP_005238313.1 378450954 complement(2398946..2399989) 1 NC_016856.1 similar to Escherichia coli possible subunit of heme lyase (AAC75254.1); involved in cytochrome c-type biogenesis; putative heme lyase subunit 2399989 ccmH_1 588858002877 ccmH_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative heme lyase subunit YP_005238313.1 2398946 R 588858 CDS YP_005238314.1 378450955 complement(2399986..2400543) 1 NC_016856.1 similar to Escherichia coli disulfide oxidoreductase; biogenesis of cytochrome c (AAC75255.1); heme lyase/disulfide oxidoreductase 2400543 ccmG_1 588858002878 ccmG_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S heme lyase/disulfide oxidoreductase YP_005238314.1 2399986 R 588858 CDS YP_005238315.1 378450956 complement(2400540..2402471) 1 NC_016856.1 similar to Escherichia coli cytochrome c-type biogenesis protein (AAC75256.1); cytochrome c-type biogenesis protein 2402471 ccmF_1 588858002879 ccmF_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome c-type biogenesis protein YP_005238315.1 2400540 R 588858 CDS YP_005238316.1 378450957 complement(2402468..2402947) 1 NC_016856.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 2402947 ccmE_1 588858002880 ccmE_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome c-type biogenesis protein CcmE YP_005238316.1 2402468 R 588858 CDS YP_005238317.1 378450958 complement(2402944..2403156) 1 NC_016856.1 similar to Escherichia coli heme exporter protein C (AAC75258.1); cytochrome c-type biogenesis protein; heme exporter protein C 2403156 ccmD_1 588858002881 ccmD_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S heme exporter protein C YP_005238317.1 2402944 R 588858 CDS YP_005238318.1 378450959 complement(2403153..2403890) 1 NC_016856.1 similar to Escherichia coli heme exporter protein C (AAC75259.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein; heme exporter protein 2403890 ccmC_1 588858002882 ccmC_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S heme exporter protein YP_005238318.1 2403153 R 588858 CDS YP_005238319.1 378450960 complement(2403942..2404601) 1 NC_016856.1 similar to Escherichia coli heme exporter protein B; cytochrome c-type biogenesis protein (AAC75260.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein; heme exporter protein 2404601 ccmB_1 588858002883 ccmB_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S heme exporter protein YP_005238319.1 2403942 R 588858 CDS YP_005238320.1 378450961 complement(2404598..2405215) 1 NC_016856.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 2405215 ccmA_1 588858002884 ccmA_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome c biogenesis protein CcmA YP_005238320.1 2404598 R 588858 CDS YP_005238321.1 378450962 complement(2405236..2405838) 1 NC_016856.1 with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; cytochrome c-type protein NapC 2405838 napC 588858002885 napC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome c-type protein NapC YP_005238321.1 2405236 R 588858 CDS YP_005238322.1 378450963 complement(2405848..2406297) 1 NC_016856.1 small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; diheme cytochrome c550 2406297 napB 588858002886 napB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S diheme cytochrome c550 YP_005238322.1 2405848 R 588858 CDS YP_005238323.1 378450964 complement(2406413..2407282) 1 NC_016856.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 2407282 napH 588858002887 napH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S quinol dehydrogenase membrane component YP_005238323.1 2406413 R 588858 CDS YP_005238324.1 378450965 complement(2407269..2407964) 1 NC_016856.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 2407964 napG 588858002888 napG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S quinol dehydrogenase periplasmic component YP_005238324.1 2407269 R 588858 CDS YP_005238325.1 378450966 complement(2407971..2410457) 1 NC_016856.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase 2410457 napA 588858002889 napA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrate reductase YP_005238325.1 2407971 R 588858 CDS YP_005238326.1 378450967 complement(2410454..2410717) 1 NC_016856.1 assembly protein for periplasmic nitrate reductase 2410717 napD 588858002890 napD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S assembly protein for periplasmic nitrate reductase YP_005238326.1 2410454 R 588858 CDS YP_005238327.1 378450968 complement(2410707..2411198) 1 NC_016856.1 Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA.; ferredoxin-type protein 2411198 napF 588858002891 napF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ferredoxin-type protein YP_005238327.1 2410707 R 588858 CDS YP_005238328.1 378450969 2411310..2411441 1 NC_016856.1 hypothetical protein 2411441 588858002892 STM14_2791 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238328.1 2411310 D 588858 CDS YP_005238329.1 378450970 2411612..2412106 1 NC_016856.1 similar to Escherichia coli ecotin; serine protease inhibitor (AAC75269.1); ecotin 2412106 eco 588858002893 eco Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ecotin YP_005238329.1 2411612 D 588858 CDS YP_005238330.1 378450971 complement(2412315..2413958) 1 NC_016856.1 efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane protein/ATP-binding component 2413958 yojI 588858002894 yojI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multidrug transporter membrane protein/ATP-binding component YP_005238330.1 2412315 R 588858 CDS YP_005238331.1 378450972 complement(2414034..2414684) 1 NC_016856.1 alkylated DNA repair protein ALKB (SW:ALKB_SALTY); specific for alkylated DNA; DNA repair system protein 2414684 alkB 588858002895 alkB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA repair system protein YP_005238331.1 2414034 R 588858 CDS YP_005238332.1 378450973 complement(2414687..2415748) 1 NC_016856.1 ADA regulatory protein; regulatory protein of adaptative response; (SW:ADA_SALTY); AraC/Xyl family; O6-methylguanine-DNA methyltransferase/transcription activator/repressor 2415748 ada 588858002896 ada Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S O6-methylguanine-DNA methyltransferase/transcription activator/repressor YP_005238332.1 2414687 R 588858 CDS YP_005238333.1 378450974 complement(2415829..2416881) 1 NC_016856.1 catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; thiamine biosynthesis lipoprotein ApbE 2416881 apbE 588858002897 apbE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiamine biosynthesis lipoprotein ApbE YP_005238333.1 2415829 R 588858 CDS YP_005238334.1 378450975 complement(2416996..2418132) 1 NC_016856.1 allows for ions and hydrophilic solutes to cross the outer membrane; outer membrane porin protein C 2418132 ompC 588858002898 ompC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane porin protein C YP_005238334.1 2416996 R 588858 CDS YP_005238335.1 378450976 2418131..2418256 1 NC_016856.1 hypothetical protein 2418256 588858002899 STM14_2798 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238335.1 2418131 D 588858 CDS YP_005238336.1 378450977 2418861..2421530 1 NC_016856.1 similar to Escherichia coli putative 2-component sensor protein (AAC75276.1); regulatory protein; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 2421530 yojN 588858002901 yojN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphotransfer intermediate protein in two-component regulatory system with RcsBC YP_005238336.1 2418861 D 588858 CDS YP_005238337.1 378450978 2421547..2422197 1 NC_016856.1 two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB 2422197 rcsB 588858002902 rcsB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator RcsB YP_005238337.1 2421547 D 588858 CDS YP_005238338.1 378450979 complement(2422300..2425146) 1 NC_016856.1 similar to Escherichia coli sensor for ctr capsule biosynthesis; probable histidine kinase acting on RcsB (AAC75278.1); in two-component regulatory system; regulates colanic capsule biosynthesis; hybrid sensory kinase in two-component regulatory system with RcsB and YojN 2425146 rcsC 588858002903 rcsC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hybrid sensory kinase in two-component regulatory system with RcsB and YojN YP_005238338.1 2422300 R 588858 CDS YP_005238339.1 378450980 complement(2425164..2425280) 1 NC_016856.1 hypothetical protein 2425280 588858002904 STM14_2803 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238339.1 2425164 R 588858 CDS YP_005238340.1 378450981 complement(2425264..2427900) 1 NC_016856.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 2427900 gyrA 588858002905 gyrA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA gyrase subunit A YP_005238340.1 2425264 R 588858 CDS YP_005238341.1 378450982 2427980..2428210 1 NC_016856.1 hypothetical protein 2428210 588858002906 STM14_2805 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238341.1 2427980 D 588858 CDS YP_005238342.1 378450983 2428153..2428293 1 NC_016856.1 hypothetical protein 2428293 588858002907 STM14_2806 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238342.1 2428153 D 588858 CDS YP_005238343.1 378450984 complement(2428310..2429512) 1 NC_016856.1 similar to Escherichia coli starvation-sensing protein (AAC74653.1); putative dehydratase 2429512 588858002908 STM14_2807 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dehydratase YP_005238343.1 2428310 R 588858 CDS YP_005238344.1 378450985 complement(2429527..2430852) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC75306.1); putative permease 2430852 588858002909 STM14_2808 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005238344.1 2429527 R 588858 CDS YP_005238345.1 378450986 2430902..2431786 1 NC_016856.1 GntR family; putative regulatory protein 2431786 588858002910 STM14_2809 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005238345.1 2430902 D 588858 CDS YP_005238346.1 378450987 2431869..2432597 1 NC_016856.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2432597 ubiG 588858002911 ubiG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-demethylubiquinone-9 3-methyltransferase YP_005238346.1 2431869 D 588858 CDS YP_005238347.1 378450988 2432657..2432773 1 NC_016856.1 hypothetical protein 2432773 588858002912 STM14_2811 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238347.1 2432657 D 588858 CDS YP_005238348.1 378450989 2432953..2435238 1 NC_016856.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2435238 nrdA 588858002913 nrdA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonucleotide-diphosphate reductase subunit alpha YP_005238348.1 2432953 D 588858 CDS YP_005238349.1 378450990 2435351..2436481 1 NC_016856.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2436481 nrdB 588858002914 nrdB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonucleotide-diphosphate reductase subunit beta YP_005238349.1 2435351 D 588858 CDS YP_005238350.1 378450991 2436481..2436735 1 NC_016856.1 plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases; 2Fe-2S ferredoxin 2436735 yfaE 588858002915 yfaE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2Fe-2S ferredoxin YP_005238350.1 2436481 D 588858 CDS YP_005238351.2 410023201 complement(2436737..2437927) 1 NC_016856.1 similar to Escherichia coli putative transport (AAC76498.1); putative permease 2437927 588858002916 STM14_2815 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005238351.2 2436737 R 588858 CDS YP_005238352.1 378450993 2438089..2438967 1 NC_016856.1 LysR family; putative transcriptional regulator 2438967 588858002917 STM14_2816 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005238352.1 2438089 D 588858 CDS YP_005238353.1 378450994 complement(2439083..2440153) 1 NC_016856.1 hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase 2440153 glpQ 588858002918 glpQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycerophosphodiester phosphodiesterase YP_005238353.1 2439083 R 588858 CDS YP_005238354.1 378450995 complement(2440158..2441516) 1 NC_016856.1 catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter 2441516 glpT 588858002919 glpT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sn-glycerol-3-phosphate transporter YP_005238354.1 2440158 R 588858 CDS YP_005238355.1 378450996 2441789..2443417 1 NC_016856.1 anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase subunit A 2443417 glpA 588858002920 glpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sn-glycerol-3-phosphate dehydrogenase subunit A YP_005238355.1 2441789 D 588858 CDS YP_005238356.1 378450997 2443407..2444666 1 NC_016856.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 2444666 glpB 588858002921 glpB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S anaerobic glycerol-3-phosphate dehydrogenase subunit B YP_005238356.1 2443407 D 588858 CDS YP_005238357.1 378450998 2444663..2445853 1 NC_016856.1 anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 2445853 glpC 588858002922 glpC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sn-glycerol-3-phosphate dehydrogenase subunit C YP_005238357.1 2444663 D 588858 CDS YP_005238358.1 378450999 2445948..2446052 1 NC_016856.1 hypothetical protein 2446052 588858002923 STM14_2822 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238358.1 2445948 D 588858 CDS YP_005238359.1 378451000 2446155..2446358 1 NC_016856.1 hypothetical protein 2446358 588858002924 STM14_2823 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238359.1 2446155 D 588858 CDS YP_005238360.1 378451001 2446348..2447301 1 NC_016856.1 ElaD; specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity island 2 type III secretion system; deubiquitinase 2447301 sseL 588858002925 sseL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S deubiquitinase YP_005238360.1 2446348 D 588858 CDS YP_005238361.1 378451002 complement(2447411..2447587) 1 NC_016856.1 putative cytoplasmic protein 2447587 588858002926 STM14_2825 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238361.1 2447411 R 588858 CDS YP_005238362.1 378451003 complement(2447593..2448396) 1 NC_016856.1 putative aldolase 2448396 588858002927 STM14_2826 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative aldolase YP_005238362.1 2447593 R 588858 CDS YP_005238363.1 378451004 complement(2448422..2449711) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC75306.1); MFS family; putative transport protein 2449711 yfaV 588858002928 yfaV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005238363.1 2448422 R 588858 CDS YP_005238364.1 378451005 complement(2449767..2450984) 1 NC_016856.1 similar to Escherichia coli putative racemase (AAC75307.1); putative galactonate dehydratase 2450984 yfaW 588858002929 yfaW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative galactonate dehydratase YP_005238364.1 2449767 R 588858 CDS YP_005238365.1 378451006 complement(2450986..2451768) 1 NC_016856.1 similar to Escherichia coli putative regulator (AAC75308.1); putative transcriptional regulator 2451768 yfaX 588858002930 yfaX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005238365.1 2450986 R 588858 CDS YP_005238366.1 378451007 complement(2452018..2453214) 1 NC_016856.1 similar to molybdopterin-biosynthesis; competence damage-inducible protein A 2453214 588858002931 STM14_2830 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S competence damage-inducible protein A YP_005238366.1 2452018 R 588858 CDS YP_005238367.1 378451008 complement(2453329..2453976) 1 NC_016856.1 putative inner membrane protein 2453976 yfaZ 588858002932 yfaZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238367.1 2453329 R 588858 CDS YP_005238368.1 378451009 2454150..2454575 1 NC_016856.1 similar to oxidative damage repair enzymes; putative NTP pyrophosphohydrolase 2454575 yfaO 588858002933 yfaO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative NTP pyrophosphohydrolase YP_005238368.1 2454150 D 588858 CDS YP_005238369.1 378451010 complement(2454620..2455225) 1 NC_016856.1 similar to Escherichia coli protein induced by aluminum (AAC75312.1); aluminum-inducible protein 2455225 ais 588858002934 ais Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aluminum-inducible protein YP_005238369.1 2454620 R 588858 CDS YP_005238370.1 378451011 2455277..2455405 1 NC_016856.1 hypothetical protein 2455405 588858002935 STM14_2834 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238370.1 2455277 D 588858 CDS YP_005238371.1 378451012 2455524..2456663 1 NC_016856.1 catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 2456663 yfbE 588858002936 yfbE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase YP_005238371.1 2455524 D 588858 CDS YP_005238372.1 378451013 2456666..2457649 1 NC_016856.1 catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 2457649 pmrF 588858002937 pmrF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase YP_005238372.1 2456666 D 588858 CDS YP_005238373.1 378451014 2457646..2459628 1 NC_016856.1 Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 2459628 yfbG 588858002938 yfbG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase YP_005238373.1 2457646 D 588858 CDS YP_005238374.1 378451015 2459625..2460524 1 NC_016856.1 putative cytoplasmic protein 2460524 588858002939 STM14_2838 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238374.1 2459625 D 588858 CDS YP_005238375.1 378451016 2460521..2462167 1 NC_016856.1 catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase 2462167 arnT 588858002940 arnT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-amino-4-deoxy-L-arabinose transferase YP_005238375.1 2460521 D 588858 CDS YP_005238376.1 378451017 2462164..2462499 1 NC_016856.1 putative inner membrane protein 2462499 588858002941 STM14_2840 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238376.1 2462164 D 588858 CDS YP_005238377.1 378451018 2462499..2462876 1 NC_016856.1 similar to Escherichia coli putative transport/receptor protein (AAC75318.1); hypothetical protein 2462876 588858002942 STM14_2841 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238377.1 2462499 D 588858 CDS YP_005238378.1 378451019 complement(2462871..2463128) 1 NC_016856.1 polymyxin b resistance protein PmrD (SW:PMRD_SALTY); polymyxin resistance protein B 2463128 pmrD 588858002943 pmrD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S polymyxin resistance protein B YP_005238378.1 2462871 R 588858 CDS YP_005238379.1 378451020 complement(2463226..2464593) 1 NC_016856.1 O-succinylbenzoic acid-CoA ligase (SW:MENE_SALTY); O-succinylbenzoic acid--CoA ligase 2464593 menE 588858002944 menE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S O-succinylbenzoic acid--CoA ligase YP_005238379.1 2463226 R 588858 CDS YP_005238380.1 378451021 complement(2464590..2465552) 1 NC_016856.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 2465552 menC 588858002945 menC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S O-succinylbenzoate synthase YP_005238380.1 2464590 R 588858 CDS YP_005238381.1 378451022 complement(2465552..2466409) 1 NC_016856.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 2466409 menB 588858002946 menB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S naphthoate synthase YP_005238381.1 2465552 R 588858 CDS YP_005238382.1 378451023 complement(2466424..2467182) 1 NC_016856.1 catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase YfbB 2467182 yfbB 588858002947 yfbB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acyl-CoA thioester hydrolase YfbB YP_005238382.1 2466424 R 588858 CDS YP_005238383.1 378451024 complement(2467179..2468849) 1 NC_016856.1 catalyzes the formation of succinate semialdehyde from 2-oxoglutarate and the synthesis of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate from succinate semialdehyde and isochorismate; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase 2468849 menD 588858002948 menD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase YP_005238383.1 2467179 R 588858 CDS YP_005238384.1 378451025 complement(2468935..2470230) 1 NC_016856.1 synthesizes isochorismate acid from chorismate; menaquinone-specific isochorismate synthase 2470230 menF 588858002949 menF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S menaquinone-specific isochorismate synthase YP_005238384.1 2468935 R 588858 CDS YP_005238385.1 378451026 complement(2470331..2470642) 1 NC_016856.1 hypothetical protein 2470642 elaB 588858002950 elaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238385.1 2470331 R 588858 CDS YP_005238386.1 378451027 complement(2470691..2471152) 1 NC_016856.1 hypothetical protein 2471152 elaA 588858002951 elaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238386.1 2470691 R 588858 CDS YP_005238387.1 378451028 2472195..2473196 1 NC_016856.1 similar to Escherichia coli positive regulator of CheA protein activity (AAC74957.1); putative chemotaxis signal transduction protein 2473196 588858002953 STM14_2852 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative chemotaxis signal transduction protein YP_005238387.1 2472195 D 588858 CDS YP_005238388.1 378451029 complement(2473237..2475018) 1 NC_016856.1 putative von Willebrand factor; contains vWF type A domain; hypothetical protein 2475018 yfbK 588858002954 yfbK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238388.1 2473237 R 588858 CDS YP_005238389.1 378451030 complement(2475407..2475529) 1 NC_016856.1 hypothetical protein 2475529 588858002955 STM14_2854 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238389.1 2475407 R 588858 CDS YP_005238390.1 378451031 2475538..2475645 1 NC_016856.1 hypothetical protein 2475645 588858002956 STM14_2855 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238390.1 2475538 D 588858 CDS YP_005238391.1 378451032 2475654..2475836 1 NC_016856.1 hypothetical protein 2475836 588858002957 STM14_2856 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238391.1 2475654 D 588858 CDS YP_005238392.1 378451033 complement(2475906..2477363) 1 NC_016856.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit N 2477363 nuoN 588858002958 nuoN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NADH dehydrogenase subunit N YP_005238392.1 2475906 R 588858 CDS YP_005238393.1 378451034 complement(2477370..2478899) 1 NC_016856.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit M 2478899 nuoM 588858002959 nuoM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NADH dehydrogenase subunit M YP_005238393.1 2477370 R 588858 CDS YP_005238394.1 378451035 complement(2479213..2481054) 1 NC_016856.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 2481054 nuoL 588858002960 nuoL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NADH dehydrogenase subunit L YP_005238394.1 2479213 R 588858 CDS YP_005238395.1 378451036 complement(2481051..2481353) 1 NC_016856.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit K 2481353 nuoK 588858002961 nuoK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NADH dehydrogenase subunit K YP_005238395.1 2481051 R 588858 CDS YP_005238396.1 378451037 complement(2481350..2481904) 1 NC_016856.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit J 2481904 nuoJ 588858002962 nuoJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NADH dehydrogenase subunit J YP_005238396.1 2481350 R 588858 CDS YP_005238397.1 378451038 complement(2481915..2482457) 1 NC_016856.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit I 2482457 nuoI 588858002963 nuoI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NADH dehydrogenase subunit I YP_005238397.1 2481915 R 588858 CDS YP_005238398.1 378451039 complement(2482472..2483449) 1 NC_016856.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit H 2483449 nuoH 588858002964 nuoH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NADH dehydrogenase subunit H YP_005238398.1 2482472 R 588858 CDS YP_005238399.1 378451040 complement(2483446..2486172) 1 NC_016856.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G 2486172 nuoG 588858002965 nuoG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NADH dehydrogenase subunit G YP_005238399.1 2483446 R 588858 CDS YP_005238400.1 378451041 complement(2486203..2487540) 1 NC_016856.1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 2487540 nuoF 588858002966 nuoF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NADH dehydrogenase I subunit F YP_005238400.1 2486203 R 588858 CDS YP_005238401.1 378451042 complement(2487537..2488037) 1 NC_016856.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit E 2488037 nuoE 588858002967 nuoE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NADH dehydrogenase subunit E YP_005238401.1 2487537 R 588858 CDS YP_005238402.1 378451043 complement(2488040..2489842) 1 NC_016856.1 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 2489842 nuoC 588858002968 nuoC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional NADH:ubiquinone oxidoreductase subunit C/D YP_005238402.1 2488040 R 588858 CDS YP_005238403.1 378451044 complement(2489929..2490591) 1 NC_016856.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 2490591 nuoB 588858002969 nuoB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NADH dehydrogenase subunit B YP_005238403.1 2489929 R 588858 CDS YP_005238404.1 378451045 complement(2490607..2491050) 1 NC_016856.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit A 2491050 nuoA 588858002970 nuoA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NADH dehydrogenase subunit A YP_005238404.1 2490607 R 588858 CDS YP_005238405.1 378451046 2491031..2491153 1 NC_016856.1 hypothetical protein 2491153 588858002971 STM14_2870 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238405.1 2491031 D 588858 CDS YP_005238406.1 378451047 complement(2491241..2491357) 1 NC_016856.1 hypothetical protein 2491357 588858002972 STM14_2871 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238406.1 2491241 R 588858 CDS YP_005238407.1 378451048 complement(2491445..2491597) 1 NC_016856.1 putative cytoplasmic protein 2491597 588858002973 STM14_2872 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238407.1 2491445 R 588858 CDS YP_005238408.1 378451049 complement(2491677..2492615) 1 NC_016856.1 similar to Escherichia coli NADH dehydrogenase transcriptional regulator; LysR family (AAC75349.1); NADH dehydrogenase transcriptional repressor 2492615 lrhA 588858002974 lrhA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NADH dehydrogenase transcriptional repressor YP_005238408.1 2491677 R 588858 CDS YP_005238409.1 378451050 2493547..2494761 1 NC_016856.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2494761 yfbQ 588858002975 yfbQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aminotransferase AlaT YP_005238409.1 2493547 D 588858 CDS YP_005238410.1 378451051 2494855..2495454 1 NC_016856.1 similar to Escherichia coli putative alpha helix protein (AAC75351.1); HD superfamily; hypothetical protein 2495454 588858002976 STM14_2875 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238410.1 2494855 D 588858 CDS YP_005238411.1 378451052 complement(2495546..2497372) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC75352.1); putative response regulator 2497372 yfbS 588858002977 yfbS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative response regulator YP_005238411.1 2495546 R 588858 CDS YP_005238412.1 378451053 complement(2497449..2498108) 1 NC_016856.1 similar to Escherichia coli putative phosphatase (AAC75353.1); putative phosphatase 2498108 yfbT 588858002978 yfbT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phosphatase YP_005238412.1 2497449 R 588858 CDS YP_005238413.1 378451054 complement(2498119..2498613) 1 NC_016856.1 hypothetical protein 2498613 yfbU 588858002979 yfbU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238413.1 2498119 R 588858 CDS YP_005238414.1 378451055 complement(2498696..2499151) 1 NC_016856.1 hypothetical protein 2499151 588858002980 STM14_2879 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238414.1 2498696 R 588858 CDS YP_005238415.1 378451056 complement(2499179..2499430) 1 NC_016856.1 hypothetical protein 2499430 588858002981 STM14_2880 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238415.1 2499179 R 588858 CDS YP_005238416.1 378451057 2499320..2499454 1 NC_016856.1 hypothetical protein 2499454 588858002982 STM14_2881 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238416.1 2499320 D 588858 CDS YP_005238417.1 378451058 2499491..2500693 1 NC_016856.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2500693 ackA 588858002983 ackA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acetate kinase YP_005238417.1 2499491 D 588858 CDS YP_005238418.1 378451059 2500770..2502914 1 NC_016856.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2502914 pta 588858002984 pta Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphate acetyltransferase YP_005238418.1 2500770 D 588858 CDS YP_005238419.1 378451060 2503132..2504652 1 NC_016856.1 similar to Escherichia coli putative S-transferase (AAC75358.1); hypothetical protein 2504652 yfcC 588858002985 yfcC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238419.1 2503132 D 588858 CDS YP_005238420.1 378451061 complement(2504701..2505654) 1 NC_016856.1 similar to Escherichia coli 1-deoxyxylulose-5-phosphate synthase; flavoprotein (AAC73523.1); putative transketolase 2505654 588858002986 STM14_2885 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transketolase YP_005238420.1 2504701 R 588858 CDS YP_005238421.1 378451062 complement(2505647..2506477) 1 NC_016856.1 similar to Escherichia coli transketolase 1 isozyme (AAC75972.1); putative transketolase 2506477 588858002987 STM14_2886 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transketolase YP_005238421.1 2505647 R 588858 CDS YP_005238422.1 378451063 complement(2506474..2507871) 1 NC_016856.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 2507871 ulaA_2 588858002988 ulaA_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S PTS system ascorbate-specific transporter subunit IIC YP_005238422.1 2506474 R 588858 CDS YP_005238423.1 378451064 complement(2507886..2508158) 1 NC_016856.1 putative cytoplasmic protein 2508158 588858002989 STM14_2888 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238423.1 2507886 R 588858 CDS YP_005238424.1 378451065 complement(2508239..2508682) 1 NC_016856.1 similar to Escherichia coli putative PTS system enzyme II A component (AAC77152.1); putative PTS system transporter subunit A component 2508682 588858002990 STM14_2889 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative PTS system transporter subunit A component YP_005238424.1 2508239 R 588858 CDS YP_005238425.1 378451066 2508681..2508854 1 NC_016856.1 hypothetical protein 2508854 588858002991 STM14_2890 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238425.1 2508681 D 588858 CDS YP_005238426.1 378451067 2508935..2509954 1 NC_016856.1 similar to Escherichia coli regulator of gluconate (gnt) operon (AAC76463.1); putative transcriptional regulator 2509954 588858002992 STM14_2891 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005238426.1 2508935 D 588858 CDS YP_005238427.1 378451068 complement(2509960..2510514) 1 NC_016856.1 similar to Escherichia coli putative regulator (AAC75359.1); putative NTP pyrophosphohydrolase 2510514 588858002993 STM14_2892 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative NTP pyrophosphohydrolase YP_005238427.1 2509960 R 588858 CDS YP_005238428.1 378451069 complement(2510571..2511122) 1 NC_016856.1 phosphodiesterase 2511122 yfcE 588858002994 yfcE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphodiesterase YP_005238428.1 2510571 R 588858 CDS YP_005238429.1 378451070 complement(2511178..2511822) 1 NC_016856.1 putative glutathione S-transferase 2511822 yfcF 588858002995 yfcF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glutathione S-transferase YP_005238429.1 2511178 R 588858 CDS YP_005238430.1 378451071 2511965..2512612 1 NC_016856.1 similar to Escherichia coli putative S-transferase (AAC75362.1); putative glutathione S-transferase 2512612 yfcG 588858002996 yfcG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glutathione S-transferase YP_005238430.1 2511965 D 588858 CDS YP_005238431.1 378451072 2512738..2513631 1 NC_016856.1 similar to Escherichia coli putative sugar nucleotide epimerase (AAC75364.1); putative sugar nucleotide epimerase 2513631 yfcH 588858002997 yfcH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sugar nucleotide epimerase YP_005238431.1 2512738 D 588858 CDS YP_005238432.1 378451073 complement(2513683..2514459) 1 NC_016856.1 histidine transport ATP-binding protein HisP (SW:HISP_SALTY); ABC superfamily ATP-binding protein; histidine/lysine/arginine/ornithine transporter subunit 2514459 hisP 588858002998 hisP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S histidine/lysine/arginine/ornithine transporter subunit YP_005238432.1 2513683 R 588858 CDS YP_005238433.1 378451074 complement(2514470..2515177) 1 NC_016856.1 histidine transport system permease protein HisM (SW:HISM_SALTY); ABC superfamily membrane protein; histidine/lysine/arginine/ornithine transport protein 2515177 hisM 588858002999 hisM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S histidine/lysine/arginine/ornithine transport protein YP_005238433.1 2514470 R 588858 CDS YP_005238434.1 378451075 complement(2515174..2515860) 1 NC_016856.1 histidine transport system permease protein HisQ (SW:HISQ_SALTY); ABC superfamily membrane protein; histidine/lysine/arginine/ornithine transport protein 2515860 hisQ 588858003000 hisQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S histidine/lysine/arginine/ornithine transport protein YP_005238434.1 2515174 R 588858 CDS YP_005238435.1 378451076 complement(2516043..2516825) 1 NC_016856.1 histidine-binding periplasmic protein precursor; HBP (SW:HISJ_SALTY); ABC superfamily binding protein; histidine transport protein 2516825 hisJ 588858003001 hisJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S histidine transport protein YP_005238435.1 2516043 R 588858 CDS YP_005238436.1 378451077 complement(2517063..2517845) 1 NC_016856.1 lysine-arginine-ornithine-binding periplasmic protein precursor; LAO-binding protein (SW:ARGT_SALTY); ABC superfamily binding protein; lysine/arginine/ornithine transport protein 2517845 argT 588858003002 argT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lysine/arginine/ornithine transport protein YP_005238436.1 2517063 R 588858 CDS YP_005238437.1 378451078 2517875..2518045 1 NC_016856.1 hypothetical protein 2518045 588858003003 STM14_2902 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238437.1 2517875 D 588858 CDS YP_005238438.1 378451079 complement(2518134..2518703) 1 NC_016856.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2518703 ubiX 588858003004 ubiX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_005238438.1 2518134 R 588858 CDS YP_005238439.1 378451080 complement(2518730..2520136) 1 NC_016856.1 similar to Escherichia coli putative amino acid/amine transport protein (AAC73363.1); putative amino acid transporter 2520136 588858003005 STM14_2904 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative amino acid transporter YP_005238439.1 2518730 R 588858 CDS YP_005238440.1 378451081 complement(2520200..2521303) 1 NC_016856.1 putative cytoplasmic protein 2521303 588858003006 STM14_2905 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238440.1 2520200 R 588858 CDS YP_005238441.1 378451082 complement(2521305..2522726) 1 NC_016856.1 similar to Escherichia coli acid sensitivity protein, putative transporter (AAC74565.1); putative amino acid transporter 2522726 588858003007 STM14_2906 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative amino acid transporter YP_005238441.1 2521305 R 588858 CDS YP_005238442.1 378451083 complement(2522817..2524214) 1 NC_016856.1 similar to Escherichia coli diaminopimelate decarboxylase (AAC75877.1); putative diaminopimelate decarboxylase 2524214 588858003008 STM14_2907 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative diaminopimelate decarboxylase YP_005238442.1 2522817 R 588858 CDS YP_005238443.1 378451084 2524425..2525852 1 NC_016856.1 similar to Escherichia coli response regulator of ato, ornithine decarboxylase antizyme (sensor ATOS) (AAC75280.1); putative regulatory protein 2525852 588858003009 STM14_2908 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005238443.1 2524425 D 588858 CDS YP_005238444.1 378451085 complement(2525888..2527405) 1 NC_016856.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2527405 purF 588858003010 purF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S amidophosphoribosyltransferase YP_005238444.1 2525888 R 588858 CDS YP_005238445.1 378451086 complement(2527443..2527931) 1 NC_016856.1 membrane protein required for colicin V production; colicin V production protein 2527931 cvpA 588858003011 cvpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S colicin V production protein YP_005238445.1 2527443 R 588858 CDS YP_005238446.1 378451087 complement(2527947..2528102) 1 NC_016856.1 hypothetical protein 2528102 588858003012 STM14_2911 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238446.1 2527947 R 588858 CDS YP_005238447.1 378451088 complement(2528242..2528916) 1 NC_016856.1 similar to Escherichia coli putative lipoprotein (AAC75374.1); hypothetical protein 2528916 dedD 588858003013 dedD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238447.1 2528242 R 588858 CDS YP_005238448.1 378451089 complement(2528906..2530174) 1 NC_016856.1 similar to Escherichia coli dihydrofolate:folylpolyglutamate synthetase; dihydrofolate synthetase (AAC75375.1); formylTHF polyglutamate synthase activity; bifunctional folylpolyglutamate synthase/dihydrofolate synthase 2530174 folC 588858003014 folC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional folylpolyglutamate synthase/dihydrofolate synthase YP_005238448.1 2528906 R 588858 CDS YP_005238449.1 378451090 complement(2530242..2531156) 1 NC_016856.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 2531156 accD 588858003015 accD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acetyl-CoA carboxylase subunit beta YP_005238449.1 2530242 R 588858 CDS YP_005238450.1 378451091 complement(2531306..2531965) 1 NC_016856.1 putative DedA family; hypothetical protein 2531965 dedA 588858003016 dedA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238450.1 2531306 R 588858 CDS YP_005238451.1 378451092 complement(2532014..2532826) 1 NC_016856.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 2532826 truA 588858003017 truA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tRNA pseudouridine synthase A YP_005238451.1 2532014 R 588858 CDS YP_005238452.1 378451093 complement(2532826..2533839) 1 NC_016856.1 similar to Escherichia coli putative PTS system enzyme II A component (AAC75379.1); putative semialdehyde dehydrogenase 2533839 usg 588858003018 usg Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative semialdehyde dehydrogenase YP_005238452.1 2532826 R 588858 CDS YP_005238453.2 410023202 complement(2533907..2535043) 1 NC_016856.1 catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase 2535043 pdxB 588858003019 pdxB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S erythronate-4-phosphate dehydrogenase YP_005238453.2 2533907 R 588858 CDS YP_005238454.1 378451095 2535147..2536148 1 NC_016856.1 in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; flagella biosynthesis regulator 2536148 flk 588858003020 flk Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagella biosynthesis regulator YP_005238454.1 2535147 D 588858 CDS YP_005238455.1 378451096 complement(2536145..2537323) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC75382.1); hypothetical protein 2537323 588858003021 STM14_2920 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238455.1 2536145 R 588858 CDS YP_005238456.1 378451097 2537322..2537438 1 NC_016856.1 hypothetical protein 2537438 588858003022 STM14_2921 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238456.1 2537322 D 588858 CDS YP_005238457.1 378451098 complement(2537503..2537877) 1 NC_016856.1 putative cytoplasmic protein 2537877 588858003023 STM14_2922 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238457.1 2537503 R 588858 CDS YP_005238458.1 378451099 2538050..2538298 1 NC_016856.1 similar to Escherichia coli regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu (AAC76220.1); helix-turn-helix; putative regulatory protein 2538298 588858003024 STM14_2923 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005238458.1 2538050 D 588858 CDS YP_005238459.1 378451100 2538467..2538835 1 NC_016856.1 putative cytoplasmic protein 2538835 588858003025 STM14_2924 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238459.1 2538467 D 588858 CDS YP_005238460.1 378451101 2538835..2539353 1 NC_016856.1 hypothetical protein 2539353 588858003026 STM14_2925 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238460.1 2538835 D 588858 CDS YP_005238461.1 378451102 complement(2539420..2540076) 1 NC_016856.1 putative inner membrane protein 2540076 588858003027 STM14_2926 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238461.1 2539420 R 588858 CDS YP_005238462.1 378451103 complement(2540174..2541388) 1 NC_016856.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 2541388 fabB 588858003028 fabB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-oxoacyl-ACP synthase YP_005238462.1 2540174 R 588858 CDS YP_005238463.1 378451104 2541548..2543548 1 NC_016856.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 2543548 mnmC 588858003029 mnmC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 5-methylaminomethyl-2-thiouridine methyltransferase YP_005238463.1 2541548 D 588858 CDS YP_005238464.1 378451105 complement(2543600..2543875) 1 NC_016856.1 putative cytoplasmic protein 2543875 yfcL 588858003030 yfcL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238464.1 2543600 R 588858 CDS YP_005238465.1 378451106 complement(2543908..2544456) 1 NC_016856.1 similar to Escherichia coli putative transporting ATPase (AAC75386.1); putative cytoplasmic protein 2544456 yfcM 588858003031 yfcM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238465.1 2543908 R 588858 CDS YP_005238466.1 378451107 complement(2544456..2545265) 1 NC_016856.1 similar to Escherichia coli putative structural protein (AAC75387.1); hypothetical protein 2545265 yfcA 588858003032 yfcA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238466.1 2544456 R 588858 CDS YP_005238467.1 378451108 complement(2545265..2546089) 1 NC_016856.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 2546089 mepA 588858003033 mepA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S penicillin-insensitive murein endopeptidase YP_005238467.1 2545265 R 588858 CDS YP_005238468.1 378451109 complement(2546093..2547178) 1 NC_016856.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2547178 aroC 588858003034 aroC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chorismate synthase YP_005238468.1 2546093 R 588858 CDS YP_005238469.1 378451110 complement(2547214..2548146) 1 NC_016856.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2548146 yfcB 588858003035 yfcB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_005238469.1 2547214 R 588858 CDS YP_005238470.1 378451111 2548312..2548863 1 NC_016856.1 contains putative Smr domain; hypothetical protein 2548863 yfcN 588858003036 yfcN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238470.1 2548312 D 588858 CDS YP_005238471.1 378451112 complement(2548963..2549448) 1 NC_016856.1 phosphohistidine phosphatase 2549448 sixA 588858003037 sixA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphohistidine phosphatase YP_005238471.1 2548963 R 588858 CDS YP_005238472.1 378451113 complement(2549657..2551804) 1 NC_016856.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 2551804 fadJ 588858003038 fadJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multifunctional fatty acid oxidation complex subunit alpha YP_005238472.1 2549657 R 588858 CDS YP_005238473.1 378451114 complement(2551804..2553114) 1 NC_016856.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 2553114 fadI 588858003039 fadI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-ketoacyl-CoA thiolase YP_005238473.1 2551804 R 588858 CDS YP_005238474.1 378451115 complement(2553292..2553576) 1 NC_016856.1 putative cytoplasmic protein 2553576 yfcZ 588858003040 yfcZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238474.1 2553292 R 588858 CDS YP_005238475.1 378451116 2553683..2553823 1 NC_016856.1 hypothetical protein 2553823 588858003041 STM14_2940 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238475.1 2553683 D 588858 CDS YP_005238476.1 378451117 complement(2553820..2553948) 1 NC_016856.1 hypothetical protein 2553948 588858003042 STM14_2941 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238476.1 2553820 R 588858 CDS YP_005238477.1 378451118 2553941..2555254 1 NC_016856.1 similar to Escherichia coli transport of long-chain fatty acids; sensitivity to phage T2 (AAC75404.1); long-chain fatty acid outer membrane transporter 2555254 fadL 588858003043 fadL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S long-chain fatty acid outer membrane transporter YP_005238477.1 2553941 D 588858 CDS YP_005238478.1 378451119 complement(2555315..2556166) 1 NC_016856.1 hypothetical protein 2556166 588858003044 STM14_2943 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238478.1 2555315 R 588858 CDS YP_005238479.1 378451120 2556359..2557300 1 NC_016856.1 similar to Escherichia coli putative transport (AAC75407.1); hypothetical protein 2557300 yfdC 588858003045 yfdC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238479.1 2556359 D 588858 CDS YP_005238480.1 378451121 complement(2557607..2558545) 1 NC_016856.1 outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA; outer membrane protease 2558545 pgtE 588858003047 pgtE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane protease YP_005238480.1 2557607 R 588858 CDS YP_005238481.1 378451122 complement(2558813..2560060) 1 NC_016856.1 phosphoglycerate transport system transcriptional regulatory protein PgtA (SW:PGTA_SALTY); phosphoglycerate transport; activator 2560060 pgtA 588858003048 pgtA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S activator YP_005238481.1 2558813 R 588858 CDS YP_005238482.1 378451123 complement(2560050..2562056) 1 NC_016856.1 protein for signal transmission; PgtB (SW:PGTB_SALTY); phosphoglycerate transport; phosphoglycerate transport system sensor protein 2562056 pgtB 588858003049 pgtB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoglycerate transport system sensor protein YP_005238482.1 2560050 R 588858 CDS YP_005238483.1 378451124 complement(2562053..2563363) 1 NC_016856.1 protein for signal transmission; PgtC precursor (SW:PGTC_SALTY); phosphoglycerate transport; phosphoglycerate transport regulatory protein precursor 2563363 pgtC 588858003050 pgtC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoglycerate transport regulatory protein precursor YP_005238483.1 2562053 R 588858 CDS YP_005238484.1 378451125 2563682..2565073 1 NC_016856.1 phosphoglycerate transporter protein (SW:PGTP_SALTY); phosphoglycerate transport; transporter 2565073 pgtP 588858003051 pgtP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transporter YP_005238484.1 2563682 D 588858 CDS YP_005238485.1 378451126 complement(2565349..2565591) 1 NC_016856.1 putative inner membrane protein 2565591 588858003052 STM14_2951 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238485.1 2565349 R 588858 CDS YP_005238486.1 378451127 complement(2565752..2565865) 1 NC_016856.1 hypothetical protein 2565865 588858003053 STM14_2952 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238486.1 2565752 R 588858 CDS YP_005238487.1 378451128 2566113..2567033 1 NC_016856.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock; lipid A biosynthesis palmitoleoyl acyltransferase 2567033 ddg 588858003054 ddg Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipid A biosynthesis palmitoleoyl acyltransferase YP_005238487.1 2566113 D 588858 CDS YP_005238488.1 378451129 complement(2567557..2568795) 1 NC_016856.1 similar to Escherichia coli putative aminotransferase (AAC75438.1); aminotransferase 2568795 yfdZ 588858003055 yfdZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aminotransferase YP_005238488.1 2567557 R 588858 CDS YP_005238489.1 378451130 complement(2569137..2569283) 1 NC_016856.1 hypothetical protein 2569283 588858003056 STM14_2955 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238489.1 2569137 R 588858 CDS YP_005238490.1 378451131 complement(2569516..2570481) 1 NC_016856.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 2570481 glk 588858003057 glk Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucokinase YP_005238490.1 2569516 R 588858 CDS YP_005238491.1 378451132 2570685..2571920 1 NC_016856.1 hypothetical protein 2571920 588858003058 STM14_2957 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238491.1 2570685 D 588858 CDS YP_005238492.1 378451133 complement(2571940..2573592) 1 NC_016856.1 similar to Escherichia coli acetolactate synthase III; valine sensitive; large subunit (AAC73188.1); putative thiamine pyrophosphate enzymes; indolepyruvate decarboxylase 2573592 588858003059 STM14_2958 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S indolepyruvate decarboxylase YP_005238492.1 2571940 R 588858 CDS YP_005238493.1 378451134 2573587..2573775 1 NC_016856.1 hypothetical protein 2573775 588858003060 STM14_2959 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238493.1 2573587 D 588858 CDS YP_005238494.1 378451135 2573772..2574770 1 NC_016856.1 similar to Escherichia coli putative reductase (AAC76037.1); putative oxidoreductase 2574770 588858003061 STM14_2960 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative oxidoreductase YP_005238494.1 2573772 D 588858 CDS YP_005238495.1 378451136 2574884..2575210 1 NC_016856.1 hypothetical protein 2575210 ypeC 588858003062 ypeC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238495.1 2574884 D 588858 CDS YP_005238496.1 378451137 complement(2575271..2576512) 1 NC_016856.1 manganese transport protein MntH (SW:MNTH_SALTY); Nramp family; manganese transport protein MntH 2576512 mntH 588858003063 mntH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S manganese transport protein MntH YP_005238496.1 2575271 R 588858 CDS YP_005238497.1 378451138 2576855..2578057 1 NC_016856.1 similar to Escherichia coli permease of transport system for 3 nucleosides (AAC75452.1); NUP family; nucleoside transport 2578057 nupC 588858003064 nupC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nucleoside transport YP_005238497.1 2576855 D 588858 CDS YP_005238498.1 378451139 complement(2578110..2580299) 1 NC_016856.1 putative diguanylate cyclase/phosphodiesterase domain 1; diguanylate cyclase/phosphodiesterase domain 2; hypothetical protein 2580299 yfeA 588858003065 yfeA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238498.1 2578110 R 588858 CDS YP_005238499.1 378451140 2580905..2581267 1 NC_016856.1 putative negative regulator 2581267 yfeC 588858003068 yfeC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative negative regulator YP_005238499.1 2580905 D 588858 CDS YP_005238500.1 378451141 2581269..2581661 1 NC_016856.1 putative negative regulator 2581661 yfeD 588858003069 yfeD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative negative regulator YP_005238500.1 2581269 D 588858 CDS YP_005238501.1 378451142 complement(2581715..2583130) 1 NC_016856.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2583130 gltX 588858003070 gltX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamyl-tRNA synthetase YP_005238501.1 2581715 R 588858 CDS YP_005238502.1 378451143 complement(2583946..2584830) 1 NC_016856.1 similar to Escherichia coli regulator for xapA (AAC75458.1); LysR family; DNA-binding transcriptional activator XapR 2584830 xapR 588858003075 xapR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional activator XapR YP_005238502.1 2583946 R 588858 CDS YP_005238503.1 378451144 complement(2584882..2585040) 1 NC_016856.1 hypothetical protein 2585040 588858003076 STM14_2975 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238503.1 2584882 R 588858 CDS YP_005238504.1 378451145 complement(2585099..2586355) 1 NC_016856.1 similar to Escherichia coli xanthosine permease (AAC75459.1); MFS superfamily; xanthosine permease 2586355 xapB 588858003077 xapB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S xanthosine permease YP_005238504.1 2585099 R 588858 CDS YP_005238505.1 378451146 complement(2586410..2587333) 1 NC_016856.1 xanthosine phosphorylase 2587333 588858003078 STM14_2977 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S xanthosine phosphorylase YP_005238505.1 2586410 R 588858 CDS YP_005238506.1 378451147 2587499..2588260 1 NC_016856.1 similar to Escherichia coli putative sugar hydrolase (AAC75461.1); hypothetical protein 2588260 yfeN 588858003079 yfeN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238506.1 2587499 D 588858 CDS YP_005238507.1 378451148 complement(2588322..2589248) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75462.1); LysR family; putative transcriptional regulator 2589248 yfeR 588858003080 yfeR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005238507.1 2588322 R 588858 CDS YP_005238508.1 378451149 2589338..2590336 1 NC_016856.1 similar to Escherichia coli putative cytochrome oxidase (AAC75463.1); putative Na+-dependent transporter 2590336 yfeH 588858003081 yfeH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative Na+-dependent transporter YP_005238508.1 2589338 D 588858 CDS YP_005238509.1 378451150 complement(2590333..2590560) 1 NC_016856.1 putative cytoplasmic protein 2590560 588858003082 STM14_2981 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238509.1 2590333 R 588858 CDS YP_005238510.1 378451151 complement(2590553..2592568) 1 NC_016856.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 2592568 ligA 588858003083 ligA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NAD-dependent DNA ligase LigA YP_005238510.1 2590553 R 588858 CDS YP_005238511.1 378451152 complement(2592640..2593626) 1 NC_016856.1 interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA 2593626 zipA 588858003084 zipA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell division protein ZipA YP_005238511.1 2592640 R 588858 CDS YP_005238512.1 378451153 2593747..2594619 1 NC_016856.1 putative role in sulfur assimilation; putative sulfate transport protein CysZ 2594619 cysZ 588858003085 cysZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sulfate transport protein CysZ YP_005238512.1 2593747 D 588858 CDS YP_005238513.1 378451154 2594783..2595754 1 NC_016856.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 2595754 cysK 588858003086 cysK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cysteine synthase A YP_005238513.1 2594783 D 588858 CDS YP_005238514.1 378451155 2595762..2595923 1 NC_016856.1 hypothetical protein 2595923 588858003087 STM14_2986 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238514.1 2595762 D 588858 CDS YP_005238515.2 410023203 complement(2595873..2595998) 1 NC_016856.1 hypothetical protein 2595998 588858003088 STM14_2987 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238515.2 2595873 R 588858 CDS YP_005238516.1 378451157 2595966..2596094 1 NC_016856.1 hypothetical protein 2596094 588858003089 STM14_2988 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238516.1 2595966 D 588858 CDS YP_005238517.1 378451158 2596138..2596395 1 NC_016856.1 phosphocarrier protein HPR; histidine-containing protein (SW:PTHP_ECOLI); PTS family, Hpr protein; phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) 2596395 ptsH 588858003090 ptsH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) YP_005238517.1 2596138 D 588858 CDS YP_005238518.1 378451159 2596444..2598171 1 NC_016856.1 Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase 2598171 ptsI 588858003091 ptsI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoenolpyruvate-protein phosphotransferase YP_005238518.1 2596444 D 588858 CDS YP_005238519.1 378451160 2598212..2598721 1 NC_016856.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; glucose-specific PTS system component 2598721 crr 588858003092 crr Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucose-specific PTS system component YP_005238519.1 2598212 D 588858 CDS YP_005238520.1 378451161 complement(2598870..2599109) 1 NC_016856.1 putative cytoplasmic protein 2599109 588858003093 STM14_2992 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238520.1 2598870 R 588858 CDS YP_005238521.1 378451162 complement(2599106..2599972) 1 NC_016856.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase 2599972 pdxK 588858003094 pdxK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyridoxal kinase YP_005238521.1 2599106 R 588858 CDS YP_005238522.1 378451163 2600055..2601347 1 NC_016856.1 putative transcriptional regulator PtsJ (SW:PTSJ_SALTY); GntR family; putative regulatory protein 2601347 ptsJ 588858003095 ptsJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005238522.1 2600055 D 588858 CDS YP_005238523.1 378451164 2601362..2602081 1 NC_016856.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 2602081 yfeJ 588858003096 yfeJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamine amidotransferase YP_005238523.1 2601362 D 588858 CDS YP_005238524.1 378451165 2602140..2602520 1 NC_016856.1 hypothetical 13.3 kDa protein in pdxK-cysM intergenic region (SW:YFEK_SALTY); hypothetical protein 2602520 yfeK 588858003097 yfeK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238524.1 2602140 D 588858 CDS YP_005238525.1 378451166 2602533..2603072 1 NC_016856.1 hypothetical 20.5 kDa protein in pdxK-cysM intergenic region (SW:YFEL_SALTY); penicillin-binding protein; putative membrane carboxypeptidase 2603072 yfeL 588858003098 yfeL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative membrane carboxypeptidase YP_005238525.1 2602533 D 588858 CDS YP_005238526.1 378451167 complement(2603203..2604114) 1 NC_016856.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 2604114 cysM 588858003099 cysM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cysteine synthase B YP_005238526.1 2603203 R 588858 CDS YP_005238527.1 378451168 complement(2604182..2605279) 1 NC_016856.1 sulfate transport atp-binding protein CYSA (SW:CYSA_SALTY); ABC superfamily ATP-binding protein; chromate resistance; sulfate/thiosulfate transporter subunit 2605279 cysA 588858003100 cysA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sulfate/thiosulfate transporter subunit YP_005238527.1 2604182 R 588858 CDS YP_005238528.1 378451169 complement(2605269..2606144) 1 NC_016856.1 Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; sulfate/thiosulfate transporter permease subunit 2606144 cysW 588858003101 cysW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sulfate/thiosulfate transporter permease subunit YP_005238528.1 2605269 R 588858 CDS YP_005238529.1 378451170 complement(2606144..2606977) 1 NC_016856.1 similar to Escherichia coli sulfate, thiosulfate transport system permease T protein (AAC75477.1); ABC superfamily membrane protein; sulfate/thiosulfate transporter subunit 2606977 cysU 588858003102 cysU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sulfate/thiosulfate transporter subunit YP_005238529.1 2606144 R 588858 CDS YP_005238530.1 378451171 complement(2606977..2607993) 1 NC_016856.1 thiosulfate-binding protein precursor (SW:CYSP_SALTY); ABC superfamily binding protein; thiosulfate transporter subunit 2607993 cysP 588858003103 cysP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiosulfate transporter subunit YP_005238530.1 2606977 R 588858 CDS YP_005238531.1 378451172 complement(2608151..2608942) 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC75479.1); short chain dehydrogenase 2608942 ucpA 588858003104 ucpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S short chain dehydrogenase YP_005238531.1 2608151 R 588858 CDS YP_005238532.1 378451173 complement(2609180..2610079) 1 NC_016856.1 putative iron-dependent peroxidase 2610079 588858003105 STM14_3004 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative iron-dependent peroxidase YP_005238532.1 2609180 R 588858 CDS YP_005238533.1 378451174 complement(2610174..2610749) 1 NC_016856.1 hypothetical protein 2610749 588858003106 STM14_3005 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238533.1 2610174 R 588858 CDS YP_005238534.1 378451175 complement(2610811..2611260) 1 NC_016856.1 putative inner membrane protein 2611260 yfeZ 588858003107 yfeZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238534.1 2610811 R 588858 CDS YP_005238535.2 410023204 complement(2611247..2611672) 1 NC_016856.1 putative acetyltransferase 2611672 588858003108 STM14_3007 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative acetyltransferase YP_005238535.2 2611247 R 588858 CDS YP_005238536.1 378451177 2611885..2612754 1 NC_016856.1 probable N-acetylmuramoyl-L-alanine amidase AMIA precursor (SW:AMIA_SALTY); N-acetylmuramoyl-l-alanine amidase I 2612754 amiA 588858003109 amiA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N-acetylmuramoyl-l-alanine amidase I YP_005238536.1 2611885 D 588858 CDS YP_005238537.1 378451178 2612757..2613656 1 NC_016856.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2613656 hemF 588858003110 hemF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S coproporphyrinogen III oxidase YP_005238537.1 2612757 D 588858 CDS YP_005238538.1 378451179 2613677..2614006 1 NC_016856.1 hypothetical protein in eutR-hemF intergenic region; ORF33 (SW:YPFK_SALTY); putative inner membrane protein 2614006 588858003111 STM14_3010 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238538.1 2613677 D 588858 CDS YP_005238539.1 378451180 2614135..2615412 1 NC_016856.1 hypothetical 30.0 kDa protein in eutR-hemF intergenic region (ORF79) (SW:YPFL_SALTY); putative cytoplasmic protein 2615412 588858003112 STM14_3011 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238539.1 2614135 D 588858 CDS YP_005238540.1 378451181 complement(2615612..2616664) 1 NC_016856.1 activates the transcription of the ethanolamine utilization operon; transcriptional regulator EutR 2616664 eutR 588858003113 eutR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator EutR YP_005238540.1 2615612 R 588858 CDS YP_005238541.1 378451182 complement(2616712..2617206) 1 NC_016856.1 ethanolamine utilization protein EutK precursor (SW:EUTK_SALTY); putative carboxysome structural protein 2617206 eutK 588858003114 eutK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative carboxysome structural protein YP_005238541.1 2616712 R 588858 CDS YP_005238542.1 378451183 complement(2617219..2617878) 1 NC_016856.1 ethanolamine utilization protein EutL (SW:EUTL_SALTY); putative carboxysome structural protein 2617878 eutL 588858003115 eutL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative carboxysome structural protein YP_005238542.1 2617219 R 588858 CDS YP_005238543.1 378451184 complement(2617888..2618784) 1 NC_016856.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 2618784 eutC 588858003116 eutC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ethanolamine ammonia-lyase small subunit YP_005238543.1 2617888 R 588858 CDS YP_005238544.1 378451185 complement(2618803..2620164) 1 NC_016856.1 ethanolamine ammonia-lyase heavy chain (SW:EUTB_SALTY); ethanolamine ammonia-lyase heavy chain 2620164 eutB 588858003117 eutB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ethanolamine ammonia-lyase heavy chain YP_005238544.1 2618803 R 588858 CDS YP_005238545.1 378451186 complement(2620176..2621579) 1 NC_016856.1 ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase 2621579 eutA 588858003118 eutA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S reactivating factor for ethanolamine ammonia lyase YP_005238545.1 2620176 R 588858 CDS YP_005238546.1 378451187 complement(2621576..2622802) 1 NC_016856.1 ethanolamine utilization protein EutH (SW:EUTH_SALTY); putative transport protein 2622802 eutH 588858003119 eutH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005238546.1 2621576 R 588858 CDS YP_005238547.1 378451188 complement(2622922..2624109) 1 NC_016856.1 ethanolamine utilization protein EutG (SW:EUTG_SALTY); putative transport protein 2624109 eutG 588858003120 eutG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005238547.1 2622922 R 588858 CDS YP_005238548.1 378451189 complement(2624099..2624938) 1 NC_016856.1 EutJ (SW:EUTJ_SALTY); putative heatshock protein 70; ethanolamine utilization protein 2624938 eutJ 588858003121 eutJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ethanolamine utilization protein YP_005238548.1 2624099 R 588858 CDS YP_005238549.1 378451190 complement(2624949..2626352) 1 NC_016856.1 invovled in ethanolamine utilization protein EutE (SW:EUTE_SALTY); putative aldehyde oxidoreductase 2626352 eutE 588858003122 eutE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative aldehyde oxidoreductase YP_005238549.1 2624949 R 588858 CDS YP_005238550.2 410023205 complement(2626364..2626651) 1 NC_016856.1 involved in ethanolamine utilization protein EutN (SW:EUTN_SALTY); putative detox protein 2626651 eutN 588858003123 eutN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative detox protein YP_005238550.2 2626364 R 588858 CDS YP_005238551.1 378451192 complement(2626764..2627054) 1 NC_016856.1 involved in ethanolamine utilization protein EutM precursor (SW:EUTM_SALTY); putative detox protein 2627054 eutM 588858003124 eutM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative detox protein YP_005238551.1 2626764 R 588858 CDS YP_005238552.1 378451193 complement(2627095..2628111) 1 NC_016856.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 2628111 eutD 588858003125 eutD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphotransacetylase YP_005238552.1 2627095 R 588858 CDS YP_005238553.1 378451194 complement(2628108..2628911) 1 NC_016856.1 ethanolamine utilization cobalamin adenosyltransferase (SW:EUTT_SALTY); putative cobalamin adenosyltransferase 2628911 eutT 588858003126 eutT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cobalamin adenosyltransferase YP_005238553.1 2628108 R 588858 CDS YP_005238554.1 378451195 complement(2628908..2629597) 1 NC_016856.1 ethanolamine utilization protein EutQ (SW:EUTQ_SALTY); putative ethanolamine utilization protein 2629597 eutQ 588858003127 eutQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ethanolamine utilization protein YP_005238554.1 2628908 R 588858 CDS YP_005238555.1 378451196 complement(2629575..2630054) 1 NC_016856.1 ethanolamine utilization protein EutP (SW:EUTP_SALTY); putative ethanolamine utilization protein 2630054 eutP 588858003128 eutP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ethanolamine utilization protein YP_005238555.1 2629575 R 588858 CDS YP_005238556.1 378451197 complement(2630067..2630402) 1 NC_016856.1 ethanolamine utilization protein EutS (SW:EUTS_SALTY); putative carboxysome structural protein 2630402 eutS 588858003129 eutS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative carboxysome structural protein YP_005238556.1 2630067 R 588858 CDS YP_005238557.1 378451198 complement(2630883..2631341) 1 NC_016856.1 transposase for insertion sequence element IS200 (SW:T200_SALTY); transposase 2631341 tnpA_8 588858003130 tnpA_8 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transposase YP_005238557.1 2630883 R 588858 CDS YP_005238558.1 378451199 complement(2631298..2631486) 1 NC_016856.1 hypothetical protein 2631486 588858003131 STM14_3030 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238558.1 2631298 R 588858 CDS YP_005238559.1 378451200 complement(2631531..2633810) 1 NC_016856.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 2633810 maeB 588858003132 maeB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S malic enzyme YP_005238559.1 2631531 R 588858 CDS YP_005238560.1 378451201 2633812..2634012 1 NC_016856.1 hypothetical protein 2634012 588858003133 STM14_3032 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238560.1 2633812 D 588858 CDS YP_005238561.1 378451202 2634082..2635032 1 NC_016856.1 Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase A 2635032 talA 588858003134 talA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transaldolase A YP_005238561.1 2634082 D 588858 CDS YP_005238562.1 378451203 2635052..2637052 1 NC_016856.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 2637052 tktB 588858003135 tktB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transketolase YP_005238562.1 2635052 D 588858 CDS YP_005238563.1 378451204 complement(2637115..2637345) 1 NC_016856.1 putative cytoplasmic protein 2637345 588858003136 STM14_3035 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238563.1 2637115 R 588858 CDS YP_005238564.1 378451205 complement(2637342..2637476) 1 NC_016856.1 hypothetical protein 2637476 588858003137 STM14_3036 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238564.1 2637342 R 588858 CDS YP_005238565.1 378451206 complement(2637473..2638516) 1 NC_016856.1 hypothetical protein 2638516 ypfG 588858003138 ypfG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238565.1 2637473 R 588858 CDS YP_005238566.1 378451207 complement(2638641..2639216) 1 NC_016856.1 putative pyrophosphohydrolase 2639216 yffH 588858003139 yffH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative pyrophosphohydrolase YP_005238566.1 2638641 R 588858 CDS YP_005238567.1 378451208 2639420..2640718 1 NC_016856.1 similar to Escherichia coli putative beta-lactamase (AAC75483.1); hypothetical protein 2640718 588858003140 STM14_3039 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238567.1 2639420 D 588858 CDS YP_005238568.1 378451209 2640806..2640913 1 NC_016856.1 hypothetical protein 2640913 588858003141 STM14_3040 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238568.1 2640806 D 588858 CDS YP_005238569.1 378451210 complement(2641167..2643128) 1 NC_016856.1 unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic); putative oxidoreductase Fe-S binding subunit 2643128 aegA 588858003142 aegA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative oxidoreductase Fe-S binding subunit YP_005238569.1 2641167 R 588858 CDS YP_005238570.2 410023206 2643314..2645014 1 NC_016856.1 similar to Escherichia coli sensor for nitrate reductase system; protein histidine kinase; acts on NarP and narL (AAC75522.1); in two-component regulatory system; nitrate/nitrite sensor protein NarQ 2645014 narQ 588858003143 narQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrate/nitrite sensor protein NarQ YP_005238570.2 2643314 D 588858 CDS YP_005238571.1 378451212 complement(2645096..2645227) 1 NC_016856.1 hypothetical protein 2645227 588858003144 STM14_3043 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238571.1 2645096 R 588858 CDS YP_005238572.1 378451213 2645199..2648312 1 NC_016856.1 similar to Escherichia coli protein that results in sensitivity to acriflavine; integral membrane protein; possible efflux pump (AAC75523.1); RND family; aminoglycoside/multidrug efflux system 2648312 acrD 588858003145 acrD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aminoglycoside/multidrug efflux system YP_005238572.1 2645199 D 588858 CDS YP_005238573.1 378451214 2648886..2649242 1 NC_016856.1 hypothetical protein 2649242 yffB 588858003146 yffB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238573.1 2648886 D 588858 CDS YP_005238574.1 378451215 2649246..2650373 1 NC_016856.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2650373 dapE 588858003147 dapE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S succinyl-diaminopimelate desuccinylase YP_005238574.1 2649246 D 588858 CDS YP_005238575.1 378451216 2650401..2650601 1 NC_016856.1 hypothetical protein 2650601 588858003148 STM14_3047 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238575.1 2650401 D 588858 CDS YP_005238576.1 378451217 complement(2650628..2652646) 1 NC_016856.1 putative acetyltransferase 2652646 ypfI 588858003149 ypfI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative acetyltransferase YP_005238576.1 2650628 R 588858 CDS YP_005238577.1 378451218 complement(2652662..2653525) 1 NC_016856.1 putative inner membrane protein 2653525 588858003150 STM14_3049 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238577.1 2652662 R 588858 CDS YP_005238578.1 378451219 complement(2653656..2654369) 1 NC_016856.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 2654369 purC 588858003151 purC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_005238578.1 2653656 R 588858 CDS YP_005238579.1 378451220 complement(2654544..2655578) 1 NC_016856.1 similar to Escherichia coli lipoprotein-34 (AAC75530.1); lipoprotein 2655578 nlpB 588858003152 nlpB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipoprotein YP_005238579.1 2654544 R 588858 CDS YP_005238580.1 378451221 complement(2655595..2656473) 1 NC_016856.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2656473 dapA 588858003153 dapA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dihydrodipicolinate synthase YP_005238580.1 2655595 R 588858 CDS YP_005238581.1 378451222 2656619..2657191 1 NC_016856.1 negative transcriptional regulator of the gcvTHP operon; glycine cleavage system transcriptional repressor 2657191 gcvR 588858003154 gcvR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycine cleavage system transcriptional repressor YP_005238581.1 2656619 D 588858 CDS YP_005238582.1 378451223 2657191..2657661 1 NC_016856.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2657661 bcp 588858003155 bcp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thioredoxin-dependent thiol peroxidase YP_005238582.1 2657191 D 588858 CDS YP_005238583.1 378451224 complement(2657708..2658061) 1 NC_016856.1 putative glycerate kinase 2658061 588858003156 STM14_3055 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycerate kinase YP_005238583.1 2657708 R 588858 CDS YP_005238584.1 378451225 complement(2657883..2658191) 1 NC_016856.1 hypothetical protein 2658191 588858003157 STM14_3056 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238584.1 2657883 R 588858 CDS YP_005238585.1 378451226 complement(2658248..2659315) 1 NC_016856.1 similar to Escherichia coli putative permease (AAC75546.1); PerM family; putative permease 2659315 perM 588858003158 perM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005238585.1 2658248 R 588858 CDS YP_005238586.1 378451227 2659523..2660986 1 NC_016856.1 putative inner membrane or exported protein; hypothetical protein 2660986 588858003159 STM14_3058 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238586.1 2659523 D 588858 CDS YP_005238587.1 378451228 2661026..2661385 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC75548.1); putative arsenate reductase 2661385 yfgD 588858003160 yfgD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative arsenate reductase YP_005238587.1 2661026 D 588858 CDS YP_005238588.1 378451229 complement(2661412..2662137) 1 NC_016856.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 2662137 yfgE 588858003161 yfgE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA replication initiation factor YP_005238588.1 2661412 R 588858 CDS YP_005238589.1 378451230 complement(2662208..2663497) 1 NC_016856.1 similar to Escherichia coli uracil transport (AAC75550.1); NCS2 family; uracil transporter 2663497 uraA 588858003162 uraA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S uracil transporter YP_005238589.1 2662208 R 588858 CDS YP_005238590.1 378451231 complement(2663585..2664211) 1 NC_016856.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2664211 upp 588858003163 upp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S uracil phosphoribosyltransferase YP_005238590.1 2663585 R 588858 CDS YP_005238591.1 378451232 complement(2664349..2664552) 1 NC_016856.1 hypothetical protein 2664552 588858003164 STM14_3063 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238591.1 2664349 R 588858 CDS YP_005238592.1 378451233 2664610..2665662 1 NC_016856.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2665662 purM 588858003165 purM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoribosylaminoimidazole synthetase YP_005238592.1 2664610 D 588858 CDS YP_005238593.1 378451234 2665662..2666300 1 NC_016856.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2666300 purN 588858003166 purN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoribosylglycinamide formyltransferase YP_005238593.1 2665662 D 588858 CDS YP_005238594.1 378451235 2666489..2668555 1 NC_016856.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2668555 ppk 588858003167 ppk Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S polyphosphate kinase YP_005238594.1 2666489 D 588858 CDS YP_005238595.1 378451236 2668560..2670101 1 NC_016856.1 similar to Escherichia coli exopolyphosphatase (AAC75555.1); exopolyphosphatase 2670101 ppx 588858003168 ppx Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S exopolyphosphatase YP_005238595.1 2668560 D 588858 CDS YP_005238596.1 378451237 complement(2670137..2672350) 1 NC_016856.1 similar to Escherichia coli putative cytochrome C-type biogenesis protein (AAC75556.1); putative diguanylate cyclase 2672350 588858003169 STM14_3068 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative diguanylate cyclase YP_005238596.1 2670137 R 588858 CDS YP_005238597.1 378451238 complement(2672447..2672584) 1 NC_016856.1 putative cytoplasmic protein 2672584 588858003170 STM14_3069 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238597.1 2672447 R 588858 CDS YP_005238598.1 378451239 complement(2672655..2672915) 1 NC_016856.1 putative inner membrane protein 2672915 588858003171 STM14_3070 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238598.1 2672655 R 588858 CDS YP_005238599.1 378451240 2672763..2672954 1 NC_016856.1 putative inner membrane protein 2672954 588858003172 STM14_3071 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238599.1 2672763 D 588858 CDS YP_005238600.1 378451241 complement(2673033..2673269) 1 NC_016856.1 putative inner membrane protein 2673269 588858003173 STM14_3072 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238600.1 2673033 R 588858 CDS YP_005238601.2 410023207 2673510..2673824 1 NC_016856.1 similar to STM2011 and STM2902; putative cytoplasmic protein 2673824 588858003174 STM14_3073 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238601.2 2673510 D 588858 CDS YP_005238602.1 378451243 complement(2673844..2674200) 1 NC_016856.1 similar to Escherichia coli IS3 putative transposase (AAC75150.1); putative transposase 2674200 588858003175 STM14_3074 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transposase YP_005238602.1 2673844 R 588858 CDS YP_005238603.1 378451244 complement(2674357..2675934) 1 NC_016856.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; bifunctional GMP synthase/glutamine amidotransferase protein 2675934 guaA 588858003176 guaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional GMP synthase/glutamine amidotransferase protein YP_005238603.1 2674357 R 588858 CDS YP_005238604.1 378451245 complement(2676004..2677554) 1 NC_016856.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inositol-5-monophosphate dehydrogenase 2677554 guaB 588858003177 guaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S inositol-5-monophosphate dehydrogenase YP_005238604.1 2676004 R 588858 CDS YP_005238605.1 378451246 2677631..2678980 1 NC_016856.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2678980 xseA 588858003178 xseA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S exodeoxyribonuclease VII large subunit YP_005238605.1 2677631 D 588858 CDS YP_005238606.1 378451247 complement(2679142..2685111) 1 NC_016856.1 ShdA (gi|5107805); similar to the C-terminal region of AIDA; IcsA; subspecies I-specific; Peyer's patch colonization and shedding factor; AIDA autotransporter-like protein 2685111 shdA 588858003179 shdA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S AIDA autotransporter-like protein YP_005238606.1 2679142 R 588858 CDS YP_005238607.1 378451248 2685671..2685784 1 NC_016856.1 hypothetical protein 2685784 588858003180 STM14_3079 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238607.1 2685671 D 588858 CDS YP_005238608.1 378451249 2685675..2685857 1 NC_016856.1 hypothetical protein 2685857 588858003181 STM14_3080 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238608.1 2685675 D 588858 CDS YP_005238609.1 378451250 complement(2685854..2685967) 1 NC_016856.1 hypothetical protein 2685967 588858003182 STM14_3081 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238609.1 2685854 R 588858 CDS YP_005238610.1 378451251 complement(2693427..2699024) 1 NC_016856.1 RatA (gi|4583529); putative outer membrane protein 2699024 ratA 588858003184 ratA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005238610.1 2693427 R 588858 CDS YP_005238611.1 378451252 complement(2699144..2700103) 1 NC_016856.1 SinI (gi|4583530); putative outer membrane protein 2700103 sinI 588858003185 sinI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005238611.1 2699144 R 588858 CDS YP_005238612.1 378451253 complement(2700161..2702353) 1 NC_016856.1 SinH (gi|4583531); similar to Escherichia coli intimin and Yersinia pestis invasin proteins; intimin-like protein 2702353 sinH 588858003186 sinH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S intimin-like protein YP_005238612.1 2700161 R 588858 CDS YP_005238613.1 378451254 2702354..2702470 1 NC_016856.1 hypothetical protein 2702470 588858003187 STM14_3086 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238613.1 2702354 D 588858 CDS YP_005238614.1 378451255 complement(2702529..2702684) 1 NC_016856.1 hypothetical protein 2702684 588858003188 STM14_3087 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238614.1 2702529 R 588858 CDS YP_005238615.1 378451256 complement(2702699..2702920) 1 NC_016856.1 putative cytoplasmic protein 2702920 yfgJ 588858003189 yfgJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238615.1 2702699 R 588858 CDS YP_005238616.1 378451257 complement(2703009..2704481) 1 NC_016856.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2704481 engA 588858003190 engA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S GTP-binding protein EngA YP_005238616.1 2703009 R 588858 CDS YP_005238617.1 378451258 2704480..2704581 1 NC_016856.1 hypothetical protein 2704581 588858003191 STM14_3090 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238617.1 2704480 D 588858 CDS YP_005238618.1 378451259 complement(2704600..2705778) 1 NC_016856.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 2705778 yfgL 588858003192 yfgL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane protein assembly complex subunit YfgL YP_005238618.1 2704600 R 588858 CDS YP_005238619.1 378451260 complement(2705789..2706409) 1 NC_016856.1 putative inner membrane protein 2706409 yfgM 588858003193 yfgM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238619.1 2705789 R 588858 CDS YP_005238620.1 378451261 complement(2706423..2707697) 1 NC_016856.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2707697 hisS 588858003194 hisS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S histidyl-tRNA synthetase YP_005238620.1 2706423 R 588858 CDS YP_005238621.1 378451262 complement(2707808..2708926) 1 NC_016856.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2708926 ispG 588858003195 ispG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_005238621.1 2707808 R 588858 CDS YP_005238622.1 378451263 complement(2708953..2709957) 1 NC_016856.1 similar to Escherichia coli putative membrane protein (AAC75569.1); hypothetical protein 2709957 yfgA 588858003196 yfgA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238622.1 2708953 R 588858 CDS YP_005238623.1 378451264 complement(2710094..2710216) 1 NC_016856.1 type IV pilus biogenesis/stability protein PilW 2710216 588858003197 STM14_3096 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S type IV pilus biogenesis/stability protein PilW YP_005238623.1 2710094 R 588858 CDS YP_005238624.1 378451265 complement(2710249..2711415) 1 NC_016856.1 hypothetical protein 2711415 yfgB 588858003198 yfgB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238624.1 2710249 R 588858 CDS YP_005238625.1 378451266 complement(2711622..2712053) 1 NC_016856.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 2712053 ndk 588858003199 ndk Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nucleoside diphosphate kinase YP_005238625.1 2711622 R 588858 CDS YP_005238626.1 378451267 2712052..2712147 1 NC_016856.1 hypothetical protein 2712147 588858003200 STM14_3099 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238626.1 2712052 D 588858 CDS YP_005238627.1 378451268 complement(2712174..2713037) 1 NC_016856.1 similar to Escherichia coli hydrogenase 4 Fe-S subunit (AAC75541.1); putative polyferredoxin 2713037 588858003201 STM14_3100 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative polyferredoxin YP_005238627.1 2712174 R 588858 CDS YP_005238628.1 378451269 complement(2713037..2713846) 1 NC_016856.1 similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit C (AAC73982.1); putative dimethylsulfoxide reductase 2713846 588858003202 STM14_3101 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dimethylsulfoxide reductase YP_005238628.1 2713037 R 588858 CDS YP_005238629.1 378451270 complement(2713839..2714468) 1 NC_016856.1 similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); putative anaerobic dimethylsulfoxide reductase 2714468 588858003203 STM14_3102 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative anaerobic dimethylsulfoxide reductase YP_005238629.1 2713839 R 588858 CDS YP_005238630.1 378451271 complement(2714465..2716870) 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase, major subunit (AAC74660.1); putative anaerobic dimethylsulfoxide reductase 2716870 588858003204 STM14_3103 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative anaerobic dimethylsulfoxide reductase YP_005238630.1 2714465 R 588858 CDS YP_005238631.1 378451272 complement(2716999..2719314) 1 NC_016856.1 penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C 2719314 pbpC 588858003205 pbpC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S penicillin-binding protein 1C YP_005238631.1 2716999 R 588858 CDS YP_005238632.1 378451273 complement(2719315..2724249) 1 NC_016856.1 putative inner membrane lipoprotein 2724249 588858003206 STM14_3105 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane lipoprotein YP_005238632.1 2719315 R 588858 CDS YP_005238633.1 378451274 2724458..2725300 1 NC_016856.1 catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase 2725300 sseA 588858003207 sseA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-mercaptopyruvate sulfurtransferase YP_005238633.1 2724458 D 588858 CDS YP_005238634.1 378451275 complement(2725280..2725504) 1 NC_016856.1 hypothetical protein 2725504 588858003208 STM14_3107 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238634.1 2725280 R 588858 CDS YP_005238635.1 378451276 2725547..2726215 1 NC_016856.1 putative cytoplasmic protein 2726215 588858003209 STM14_3108 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238635.1 2725547 D 588858 CDS YP_005238636.1 378451277 complement(2726253..2726387) 1 NC_016856.1 hypothetical protein 2726387 588858003210 STM14_3109 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238636.1 2726253 R 588858 CDS YP_005238637.1 378451278 complement(2726784..2727569) 1 NC_016856.1 enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB 2727569 sseB 588858003211 sseB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S enhanced serine sensitivity protein SseB YP_005238637.1 2726784 R 588858 CDS YP_005238638.1 378451279 complement(2727670..2728953) 1 NC_016856.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 2728953 pepB 588858003212 pepB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aminopeptidase B YP_005238638.1 2727670 R 588858 CDS YP_005238639.1 378451280 complement(2729200..2729400) 1 NC_016856.1 believed to be involved in assembly of Fe-S clusters; hypothetical protein 2729400 yfhJ 588858003213 yfhJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238639.1 2729200 R 588858 CDS YP_005238640.1 378451281 complement(2729412..2729747) 1 NC_016856.1 similar to Escherichia coli 2FE-2S ferredoxin, electron carrer protein (AAC75578.1); believed to be involved in assembly of Fe-S clusters; electron carrer protein 2729747 fdx 588858003214 fdx Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S electron carrer protein YP_005238640.1 2729412 R 588858 CDS YP_005238641.1 378451282 complement(2729749..2731599) 1 NC_016856.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 2731599 hscA 588858003215 hscA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chaperone protein HscA YP_005238641.1 2729749 R 588858 CDS YP_005238642.1 378451283 complement(2731612..2732127) 1 NC_016856.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 2732127 hscB 588858003216 hscB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S co-chaperone HscB YP_005238642.1 2731612 R 588858 CDS YP_005238643.1 378451284 complement(2732323..2732646) 1 NC_016856.1 forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; iron-sulfur cluster assembly protein 2732646 iscA 588858003217 iscA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S iron-sulfur cluster assembly protein YP_005238643.1 2732323 R 588858 CDS YP_005238644.1 378451285 complement(2732675..2733061) 1 NC_016856.1 similar to NifU; involved in Fe-S cluster formation; scaffold protein 2733061 nifU 588858003218 nifU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S scaffold protein YP_005238644.1 2732675 R 588858 CDS YP_005238645.1 378451286 complement(2733089..2734303) 1 NC_016856.1 catalyzes the removal of sulfur from cysteine to form alanine; cysteine desulfurase 2734303 nifS 588858003219 nifS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cysteine desulfurase YP_005238645.1 2733089 R 588858 CDS YP_005238646.1 378451287 2734356..2734475 1 NC_016856.1 hypothetical protein 2734475 588858003220 STM14_3119 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238646.1 2734356 D 588858 CDS YP_005238647.1 378451288 complement(2734484..2734978) 1 NC_016856.1 regulates the expression of the iscRSUA operon; DNA-binding transcriptional regulator IscR 2734978 yfhP 588858003221 yfhP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator IscR YP_005238647.1 2734484 R 588858 CDS YP_005238648.1 378451289 complement(2735138..2735869) 1 NC_016856.1 similar to Escherichia coli putative ATP synthase beta subunit (AAC75585.1); putative rRNA methylase 2735869 588858003222 STM14_3121 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative rRNA methylase YP_005238648.1 2735138 R 588858 CDS YP_005238649.1 378451290 2735856..2735978 1 NC_016856.1 hypothetical protein 2735978 588858003223 STM14_3122 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238649.1 2735856 D 588858 CDS YP_005238650.1 378451291 complement(2735883..2735993) 1 NC_016856.1 hypothetical protein 2735993 588858003224 STM14_3123 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238650.1 2735883 R 588858 CDS YP_005238651.1 378451292 2735988..2736791 1 NC_016856.1 similar to Escherichia coli enhances synthesis of sigma32 in mutant; extragenic suppressor, may modulate RNAse III lethal action (AAC75586.1); inositol monophosphatase 2736791 suhB 588858003225 suhB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S inositol monophosphatase YP_005238651.1 2735988 D 588858 CDS YP_005238652.1 378451293 2736936..2737814 1 NC_016856.1 similar to Escherichia coli putative enzyme (AAC75587.1); putative hydrolase 2737814 588858003226 STM14_3125 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrolase YP_005238652.1 2736936 D 588858 CDS YP_005238653.1 378451294 2737996..2739039 1 NC_016856.1 anaerobic sulfite reductase subunit A (anaerobic sulfite reductaseiron-sulfur subunit) (SW:ASRA_SALTY); anaerobic sulfide reductase 2739039 asrA 588858003227 asrA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S anaerobic sulfide reductase YP_005238653.1 2737996 D 588858 CDS YP_005238654.1 378451295 2739043..2739861 1 NC_016856.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 2739861 asrB 588858003228 asrB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S anaerobic sulfite reductase subunit B YP_005238654.1 2739043 D 588858 CDS YP_005238655.1 378451296 2739872..2740885 1 NC_016856.1 anaerobic sulfite reductase subunit C (SW:ASRC_SALTY); anaerobic sulfide reductase 2740885 asrC 588858003229 asrC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S anaerobic sulfide reductase YP_005238655.1 2739872 D 588858 CDS YP_005238656.1 378451297 complement(2740886..2741872) 1 NC_016856.1 putative inner membrane protein 2741872 588858003230 STM14_3129 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238656.1 2740886 R 588858 CDS YP_005238657.1 378451298 complement(2741863..2742501) 1 NC_016856.1 putative periplasmic protein; hypothetical protein 2742501 588858003231 STM14_3130 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238657.1 2741863 R 588858 CDS YP_005238658.1 378451299 2742627..2743904 1 NC_016856.1 stationary phase inducible protein CsiE 2743904 csiE 588858003232 csiE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S stationary phase inducible protein CsiE YP_005238658.1 2742627 D 588858 CDS YP_005238659.1 378451300 complement(2743899..2745038) 1 NC_016856.1 putative transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; putative 3-phenylpropionic acid transporter 2745038 hcaT 588858003233 hcaT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative 3-phenylpropionic acid transporter YP_005238659.1 2743899 R 588858 CDS YP_005238660.1 378451301 complement(2745234..2746487) 1 NC_016856.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 2746487 glyA 588858003234 glyA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S serine hydroxymethyltransferase YP_005238660.1 2745234 R 588858 CDS YP_005238661.1 378451302 complement(2746625..2746771) 1 NC_016856.1 hypothetical protein 2746771 588858003235 STM14_3134 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238661.1 2746625 R 588858 CDS YP_005238662.1 378451303 2746812..2748002 1 NC_016856.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 2748002 hmpA 588858003236 hmpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitric oxide dioxygenase YP_005238662.1 2746812 D 588858 CDS YP_005238663.1 378451304 2748184..2749728 1 NC_016856.1 regulates the cadBA operon; DNA-binding transcriptional activator CadC 2749728 cadC 588858003237 cadC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional activator CadC YP_005238663.1 2748184 D 588858 CDS YP_005238664.1 378451305 2750089..2751420 1 NC_016856.1 antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; lysine/cadaverine antiporter 2751420 cadB 588858003238 cadB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lysine/cadaverine antiporter YP_005238664.1 2750089 D 588858 CDS YP_005238665.1 378451306 2751503..2753647 1 NC_016856.1 lysine decarboxylase; inducible (SW:DCLY_SALTY); lysine decarboxylase 1 2753647 cadA 588858003239 cadA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lysine decarboxylase 1 YP_005238665.1 2751503 D 588858 CDS YP_005238666.1 378451307 2753703..2755163 1 NC_016856.1 similar to Escherichia coli putative peptide transporter (AAC77091.1); POT family; putative di-/tripeptide transport protein 2755163 yjdL 588858003240 yjdL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative di-/tripeptide transport protein YP_005238666.1 2753703 D 588858 CDS YP_005238667.1 378451308 complement(2755212..2755550) 1 NC_016856.1 indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; nitrogen regulatory protein P-II 1 2755550 glnB 588858003241 glnB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrogen regulatory protein P-II 1 YP_005238667.1 2755212 R 588858 CDS YP_005238668.1 378451309 complement(2755627..2756964) 1 NC_016856.1 similar to Escherichia coli putative 2-component transcriptional regulator (AAC75607.1); regulator of two-component regulator protein; EBP family; putative transcriptional regulator 2756964 yfhA 588858003242 yfhA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005238668.1 2755627 R 588858 CDS YP_005238669.1 378451310 complement(2756961..2757725) 1 NC_016856.1 similar to Escherichia coli putative alpha helix protein (AAC75608.1); regulator of two-component regulator protein; EBP familiiy; hypothetical protein 2757725 yfhG 588858003243 yfhG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238669.1 2756961 R 588858 CDS YP_005238670.1 378451311 complement(2757727..2759169) 1 NC_016856.1 similar to Escherichia coli putative 2-component sensor protein (AAC75609.1); regulatory protein; putative sensor kinase 2759169 yfhK 588858003244 yfhK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sensor kinase YP_005238670.1 2757727 R 588858 CDS YP_005238671.1 378451312 2759420..2759548 1 NC_016856.1 hypothetical protein 2759548 588858003245 STM14_3144 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238671.1 2759420 D 588858 CDS YP_005238672.1 378451313 complement(2759807..2763694) 1 NC_016856.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 2763694 purG 588858003246 purG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoribosylformylglycinamidine synthase YP_005238672.1 2759807 R 588858 CDS YP_005238673.1 378451314 2763716..2763949 1 NC_016856.1 hypothetical protein 2763949 588858003247 STM14_3146 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238673.1 2763716 D 588858 CDS YP_005238674.1 378451315 2763950..2765494 1 NC_016856.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 2765494 yfhD 588858003248 yfhD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transglycosylase YP_005238674.1 2763950 D 588858 CDS YP_005238675.1 378451316 complement(2765545..2766096) 1 NC_016856.1 similar to Escherichia coli putative deaminase (AAC75612.1); tRNA-specific adenosine deaminase 2766096 yfhC 588858003249 yfhC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tRNA-specific adenosine deaminase YP_005238675.1 2765545 R 588858 CDS YP_005238676.1 378451317 complement(2766121..2766756) 1 NC_016856.1 hypothetical protein 2766756 yfhB 588858003250 yfhB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238676.1 2766121 R 588858 CDS YP_005238677.1 378451318 complement(2766760..2768121) 1 NC_016856.1 similar to Escherichia coli putative PTS enzyme II (AAC75482.1); putative phosphotransferase system IIB component 2768121 588858003251 STM14_3150 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phosphotransferase system IIB component YP_005238677.1 2766760 R 588858 CDS YP_005238678.1 378451319 complement(2768132..2769025) 1 NC_016856.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase 2769025 murQ 588858003252 murQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N-acetylmuramic acid 6-phosphate etherase YP_005238678.1 2768132 R 588858 CDS YP_005238679.1 378451320 2769141..2769989 1 NC_016856.1 putative ABC superfamily membrane protein; putative DNA-binding transcriptional regulator 2769989 yfhH 588858003253 yfhH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA-binding transcriptional regulator YP_005238679.1 2769141 D 588858 CDS YP_005238680.1 378451321 complement(2770028..2770945) 1 NC_016856.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 2770945 588858003254 STM14_3153 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-dehydropantoate 2-reductase YP_005238680.1 2770028 R 588858 CDS YP_005238681.1 378451322 complement(2770967..2772163) 1 NC_016856.1 similar to Escherichia coli putative resistance protein (AAC76571.1); putative permease 2772163 588858003255 STM14_3154 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005238681.1 2770967 R 588858 CDS YP_005238682.1 378451323 2772279..2773205 1 NC_016856.1 similar to Escherichia coli cyn operon positive regulator (AAC73441.1); LysR family; putative transcriptional regulator 2773205 588858003256 STM14_3155 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005238682.1 2772279 D 588858 CDS YP_005238683.1 378451324 2773243..2773503 1 NC_016856.1 putative ferredoxin 2773503 yfhL 588858003257 yfhL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ferredoxin YP_005238683.1 2773243 D 588858 CDS YP_005238684.1 378451325 complement(2773615..2773995) 1 NC_016856.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 2773995 acpS 588858003258 acpS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4'-phosphopantetheinyl transferase YP_005238684.1 2773615 R 588858 CDS YP_005238685.1 378451326 complement(2773995..2774726) 1 NC_016856.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxal phosphate biosynthetic protein PdxJ 2774726 pdxJ 588858003259 pdxJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyridoxal phosphate biosynthetic protein PdxJ YP_005238685.1 2773995 R 588858 CDS YP_005238686.1 378451327 complement(2774738..2775466) 1 NC_016856.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 2775466 recO 588858003260 recO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA repair protein RecO YP_005238686.1 2774738 R 588858 CDS YP_005238687.1 378451328 complement(2775478..2776383) 1 NC_016856.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 2776383 era 588858003261 era Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S GTP-binding protein Era YP_005238687.1 2775478 R 588858 CDS YP_005238688.1 378451329 complement(2776380..2777060) 1 NC_016856.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 2777060 rnc 588858003262 rnc Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonuclease III YP_005238688.1 2776380 R 588858 CDS YP_005238689.1 378451330 complement(2777334..2778308) 1 NC_016856.1 catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I 2778308 lepB 588858003263 lepB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S signal peptidase I YP_005238689.1 2777334 R 588858 CDS YP_005238690.1 378451331 complement(2778325..2780124) 1 NC_016856.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 2780124 lepA 588858003264 lepA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S GTP-binding protein LepA YP_005238690.1 2778325 R 588858 CDS YP_005238691.1 378451332 2780529..2782022 1 NC_016856.1 leucine-rich repeat protein; hypothetical protein 2782022 gogB 588858003265 gogB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238691.1 2780529 D 588858 CDS YP_005238692.1 378451333 complement(2782226..2782354) 1 NC_016856.1 hypothetical protein 2782354 588858003266 STM14_3165 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238692.1 2782226 R 588858 CDS YP_005238693.1 378451334 2782885..2783430 1 NC_016856.1 similar to transposase; transposase-like protein 2783430 588858003267 STM14_3166 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transposase-like protein YP_005238693.1 2782885 D 588858 CDS YP_005238694.1 378451335 2784542..2784769 1 NC_016856.1 similar to pagK; PagK-like protein 2784769 588858003268 STM14_3167 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S PagK-like protein YP_005238694.1 2784542 D 588858 CDS YP_005238695.1 378451336 complement(2784866..2785444) 1 NC_016856.1 phage tail assembly protein (gi|2460256); phage tail assembly-like protein 2785444 588858003269 STM14_3168 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage tail assembly-like protein YP_005238695.1 2784866 R 588858 CDS YP_005238696.1 378451337 complement(2785434..2786258) 1 NC_016856.1 phage tail assembly protein (gi|2460256); phage tail assembly-like protein 2786258 588858003270 STM14_3169 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage tail assembly-like protein YP_005238696.1 2785434 R 588858 CDS YP_005238697.1 378451338 complement(2786255..2788627) 1 NC_016856.1 similar to Escherichia coli putative membrane protein (AAC74454.1); tail fiber-like protein 2788627 588858003271 STM14_3170 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tail fiber-like protein YP_005238697.1 2786255 R 588858 CDS YP_005238698.2 410023208 complement(2788681..2788923) 1 NC_016856.1 hypothetical protein 2788923 588858003272 STM14_3171 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238698.2 2788681 R 588858 CDS YP_005238699.1 378451340 complement(2788962..2792324) 1 NC_016856.1 similar to host specificity protein-J in phage lambda; host specificity protein-J-like protein 2792324 588858003273 STM14_3172 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S host specificity protein-J-like protein YP_005238699.1 2788962 R 588858 CDS YP_005238700.1 378451341 complement(2792386..2793033) 1 NC_016856.1 similar to tail assembly protein I in phage lambda; tail assembly protein I-like protein 2793033 588858003274 STM14_3173 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tail assembly protein I-like protein YP_005238700.1 2792386 R 588858 CDS YP_005238701.1 378451342 complement(2792931..2793668) 1 NC_016856.1 similar to tail assembly protein K in phage lambda; tail assembly protein K-like protein 2793668 588858003275 STM14_3174 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tail assembly protein K-like protein YP_005238701.1 2792931 R 588858 CDS YP_005238702.1 378451343 complement(2793675..2794373) 1 NC_016856.1 similar to phage tail component L; phage tail component L-like protein 2794373 588858003276 STM14_3175 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage tail component L-like protein YP_005238702.1 2793675 R 588858 CDS YP_005238703.1 378451344 complement(2794383..2794712) 1 NC_016856.1 similar to lambda phage M tail component (gi|2232363); phage tail component M-like protein 2794712 588858003277 STM14_3176 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage tail component M-like protein YP_005238703.1 2794383 R 588858 CDS YP_005238704.1 378451345 complement(2794715..2797810) 1 NC_016856.1 similar to lambda phage tail component H (gi|2232364); phage tail component H-like protein 2797810 588858003278 STM14_3177 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage tail component H-like protein YP_005238704.1 2794715 R 588858 CDS YP_005238705.1 378451346 complement(2797782..2798120) 1 NC_016856.1 similar to minor tail protein; minor tail-like protein 2798120 588858003279 STM14_3178 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S minor tail-like protein YP_005238705.1 2797782 R 588858 CDS YP_005238706.1 378451347 complement(2798117..2798512) 1 NC_016856.1 similar to minor tail protein; minor tail-like protein 2798512 588858003280 STM14_3179 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S minor tail-like protein YP_005238706.1 2798117 R 588858 CDS YP_005238707.2 410023209 complement(2798563..2799306) 1 NC_016856.1 similar to major tail protein; major tail-like protein 2799306 588858003281 STM14_3180 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S major tail-like protein YP_005238707.2 2798563 R 588858 CDS YP_005238708.1 378451349 complement(2799317..2799718) 1 NC_016856.1 hypothetical protein 2799718 588858003282 STM14_3181 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238708.1 2799317 R 588858 CDS YP_005238709.2 410023210 2799827..2800957 1 NC_016856.1 similar to Escherichia coli putative virulence protein (AAC74514.1); putative virulence protein 2800957 588858003283 STM14_3182 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative virulence protein YP_005238709.2 2799827 D 588858 CDS YP_005238710.1 378451351 complement(2801006..2801584) 1 NC_016856.1 similar to minor tail protein Z; minor tail protein Z-like protein 2801584 588858003284 STM14_3183 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S minor tail protein Z-like protein YP_005238710.1 2801006 R 588858 CDS YP_005238711.1 378451352 complement(2801612..2801995) 1 NC_016856.1 similar to minor capsid protein FII of phage N15; minor capsid protein FII 2801995 588858003285 STM14_3184 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S minor capsid protein FII YP_005238711.1 2801612 R 588858 CDS YP_005238712.1 378451353 complement(2802428..2803456) 1 NC_016856.1 similar to head protein gp7 of phage 21; phage head-like protein 2803456 588858003287 STM14_3186 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage head-like protein YP_005238712.1 2802428 R 588858 CDS YP_005238713.1 378451354 complement(2803511..2803858) 1 NC_016856.1 similar to head protein gpshp of phage 21; phage head-like protein 2803858 588858003288 STM14_3187 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage head-like protein YP_005238713.1 2803511 R 588858 CDS YP_005238714.1 378451355 complement(2803871..2805367) 1 NC_016856.1 similar to head-tail preconnector gp5 of phage 21; similar to Escherichia coli putative protease (AAC74354.1); head-tail preconnector-like protein 2805367 588858003289 STM14_3188 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S head-tail preconnector-like protein YP_005238714.1 2803871 R 588858 CDS YP_005238715.1 378451356 complement(2805357..2806937) 1 NC_016856.1 similar to head-tail preconnector gp4 of phage 21; head-tail preconnector-like protein 2806937 588858003290 STM14_3189 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S head-tail preconnector-like protein YP_005238715.1 2805357 R 588858 CDS YP_005238716.1 378451357 complement(2806934..2807137) 1 NC_016856.1 similar to head to tail joining protein; head-to-tail joining-like protein 2807137 588858003291 STM14_3190 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S head-to-tail joining-like protein YP_005238716.1 2806934 R 588858 CDS YP_005238717.1 378451358 complement(2807121..2809052) 1 NC_016856.1 similar to terminase large chain gp2 of N15; terminase-like large protein 2809052 588858003292 STM14_3191 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S terminase-like large protein YP_005238717.1 2807121 R 588858 CDS YP_005238718.1 378451359 complement(2809024..2809569) 1 NC_016856.1 similar to DNA packaging protein Nu1 of phage 21; similar to Qin prophage packaging protein NU1 (AAC74621.1); DNA packaging-like protein 2809569 588858003293 STM14_3192 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA packaging-like protein YP_005238718.1 2809024 R 588858 CDS YP_005238719.1 378451360 2809856..2810257 1 NC_016856.1 hypothetical protein 2810257 588858003294 STM14_3193 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238719.1 2809856 D 588858 CDS YP_005238720.1 378451361 complement(2810493..2810966) 1 NC_016856.1 similar to Escherichia coli bacteriophage lambda endopeptidase (AAC73657.1); endopeptidase-like protein 2810966 588858003295 STM14_3194 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S endopeptidase-like protein YP_005238720.1 2810493 R 588858 CDS YP_005238721.1 378451362 complement(2810963..2811415) 1 NC_016856.1 similar to morphogenesis protein of phage B103; similar to Escherichia coli bacteriophage lambda lysozyme (AAC73656.1); morphogenesis-like protein 2811415 588858003296 STM14_3195 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S morphogenesis-like protein YP_005238721.1 2810963 R 588858 CDS YP_005238722.1 378451363 complement(2811399..2811728) 1 NC_016856.1 hypothetical protein 2811728 588858003297 STM14_3196 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238722.1 2811399 R 588858 CDS YP_005238723.1 378451364 2811771..2811908 1 NC_016856.1 hypothetical protein 2811908 588858003298 STM14_3197 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238723.1 2811771 D 588858 CDS YP_005238724.1 378451365 2812004..2812690 1 NC_016856.1 hypothetical protein 2812690 588858003299 STM14_3198 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238724.1 2812004 D 588858 CDS YP_005238725.1 378451366 complement(2812905..2813093) 1 NC_016856.1 hypothetical protein 2813093 588858003300 STM14_3199 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238725.1 2812905 R 588858 CDS YP_005238726.1 378451367 complement(2813600..2814163) 1 NC_016856.1 similar to antirepressor protein of phage P22; antirepressor-like protein 2814163 588858003302 STM14_3201 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S antirepressor-like protein YP_005238726.1 2813600 R 588858 CDS YP_005238727.1 378451368 complement(2814160..2814285) 1 NC_016856.1 hypothetical protein 2814285 588858003303 STM14_3202 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238727.1 2814160 R 588858 CDS YP_005238728.1 378451369 complement(2814436..2815113) 1 NC_016856.1 similar to antiterminator Q; antiterminator-like protein 2815113 588858003304 STM14_3203 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S antiterminator-like protein YP_005238728.1 2814436 R 588858 CDS YP_005238729.1 378451370 complement(2815110..2815250) 1 NC_016856.1 hypothetical protein 2815250 588858003305 STM14_3204 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238729.1 2815110 R 588858 CDS YP_005238730.1 378451371 complement(2815247..2815858) 1 NC_016856.1 hypothetical protein 2815858 588858003306 STM14_3205 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238730.1 2815247 R 588858 CDS YP_005238731.1 378451372 complement(2815861..2816061) 1 NC_016856.1 hypothetical protein 2816061 588858003307 STM14_3206 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238731.1 2815861 R 588858 CDS YP_005238732.1 378451373 complement(2816067..2816669) 1 NC_016856.1 hypothetical protein 2816669 588858003308 STM14_3207 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238732.1 2816067 R 588858 CDS YP_005238733.1 378451374 complement(2816704..2816883) 1 NC_016856.1 putative bacteriophage protein 2816883 588858003309 STM14_3208 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative bacteriophage protein YP_005238733.1 2816704 R 588858 CDS YP_005238734.1 378451375 2816906..2817040 1 NC_016856.1 prophage DinI 2817040 588858003310 STM14_3209 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S prophage DinI YP_005238734.1 2816906 D 588858 CDS YP_005238735.1 378451376 complement(2817069..2817302) 1 NC_016856.1 hypothetical protein 2817302 588858003311 STM14_3210 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238735.1 2817069 R 588858 CDS YP_005238736.1 378451377 complement(2817545..2818177) 1 NC_016856.1 similar to hypothetical protein Senterienterica_19312 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486]; hypothetical protein 2818177 588858003312 STM14_3211 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238736.1 2817545 R 588858 CDS YP_005238737.1 378451378 complement(2818285..2818983) 1 NC_016856.1 Eaa1 2818983 588858003313 STM14_3212 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Eaa1 YP_005238737.1 2818285 R 588858 CDS YP_005238738.1 378451379 complement(2818997..2819692) 1 NC_016856.1 phage replication protein P 2819692 588858003314 STM14_3213 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage replication protein P YP_005238738.1 2818997 R 588858 CDS YP_005238739.1 378451380 complement(2819689..2820573) 1 NC_016856.1 phage replication protein O 2820573 588858003315 STM14_3214 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage replication protein O YP_005238739.1 2819689 R 588858 CDS YP_005238740.1 378451381 complement(2820665..2821039) 1 NC_016856.1 prophage cI protein 2821039 588858003316 STM14_3215 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S prophage cI protein YP_005238740.1 2820665 R 588858 CDS YP_005238741.1 378451382 complement(2820999..2821259) 1 NC_016856.1 similar to hypothetical protein Salentericaenterica_18455 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537]; hypothetical protein 2821259 588858003317 STM14_3216 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238741.1 2820999 R 588858 CDS YP_005238742.2 410023211 2821341..2821736 1 NC_016856.1 putative regulator 2821736 588858003318 STM14_3217 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulator YP_005238742.2 2821341 D 588858 CDS YP_005238743.1 378451384 2821795..2822634 1 NC_016856.1 chromosome partitioning ATPase 2822634 588858003319 STM14_3218 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chromosome partitioning ATPase YP_005238743.1 2821795 D 588858 CDS YP_005238744.2 410023212 2822627..2823013 1 NC_016856.1 similar to hypothetical protein Salentericaenterica_18440 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537]; hypothetical protein 2823013 588858003320 STM14_3219 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238744.2 2822627 D 588858 CDS YP_005238745.1 378451386 2823013..2823675 1 NC_016856.1 similar to hypothetical protein Salentericaenterica_18435 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537]; hypothetical protein 2823675 588858003321 STM14_3220 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238745.1 2823013 D 588858 CDS YP_005238746.1 378451387 2824017..2824139 1 NC_016856.1 Gifsy-1 prophage protein 2824139 588858003322 STM14_3221 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Gifsy-1 prophage protein YP_005238746.1 2824017 D 588858 CDS YP_005238747.1 378451388 2824132..2824290 1 NC_016856.1 hypothetical protein 2824290 588858003323 STM14_3222 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238747.1 2824132 D 588858 CDS YP_005238748.1 378451389 2824312..2824662 1 NC_016856.1 hypothetical protein 2824662 588858003324 STM14_3223 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238748.1 2824312 D 588858 CDS YP_005238749.1 378451390 2824789..2827716 1 NC_016856.1 similar to exodeoxyribonuclease VIII (gi|7467238); exodeoxyribonuclease VIII-like protein 2827716 588858003325 STM14_3224 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S exodeoxyribonuclease VIII-like protein YP_005238749.1 2824789 D 588858 CDS YP_005238750.1 378451391 2827727..2828836 1 NC_016856.1 similar to enterohemolysin 1 in Escherichia coli; hypothetical protein AAC26069.1 (gi|7467267); enterohemolysin 1-like protein 2828836 588858003326 STM14_3225 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S enterohemolysin 1-like protein YP_005238750.1 2827727 D 588858 CDS YP_005238751.1 378451392 2828879..2829118 1 NC_016856.1 putative cytoplasmic protein 2829118 588858003327 STM14_3226 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238751.1 2828879 D 588858 CDS YP_005238752.1 378451393 2829159..2829443 1 NC_016856.1 similar to excisionase in phage phi-80; probable excisionase (gi|7467278); excisionase-like protein 2829443 588858003328 STM14_3227 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S excisionase-like protein YP_005238752.1 2829159 D 588858 CDS YP_005238753.1 378451394 complement(2829421..2830650) 1 NC_016856.1 similar to integrase in phage (gi|7467280); integrase-like protein 2830650 588858003329 STM14_3228 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S integrase-like protein YP_005238753.1 2829421 R 588858 CDS YP_005238754.1 378451395 2830868..2831005 1 NC_016856.1 hypothetical protein 2831005 588858003330 STM14_3229 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238754.1 2830868 D 588858 CDS YP_005238755.1 378451396 complement(2831002..2831118) 1 NC_016856.1 hypothetical protein 2831118 588858003331 STM14_3230 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238755.1 2831002 R 588858 CDS YP_005238756.1 378451397 complement(2831148..2831627) 1 NC_016856.1 involved in the reduction of the SoxR iron-sulfur cluster; SoxR reducing system protein RseC 2831627 rseC 588858003332 rseC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S SoxR reducing system protein RseC YP_005238756.1 2831148 R 588858 CDS YP_005238757.1 378451398 complement(2831624..2832580) 1 NC_016856.1 periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE 2832580 rseB 588858003333 rseB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S periplasmic negative regulator of sigmaE YP_005238757.1 2831624 R 588858 CDS YP_005238758.1 378451399 complement(2832580..2833230) 1 NC_016856.1 similar to Escherichia coli anti sigma-E/sigma 24 factor; negative regulatory protein (AAC75625.1); anti-RNA polymerase sigma factor SigE 2833230 rseA 588858003334 rseA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S anti-RNA polymerase sigma factor SigE YP_005238758.1 2832580 R 588858 CDS YP_005238759.1 378451400 complement(2833262..2833837) 1 NC_016856.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 2833837 rpoE 588858003335 rpoE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S RNA polymerase sigma factor RpoE YP_005238759.1 2833262 R 588858 CDS YP_005238760.1 378451401 complement(2833834..2833998) 1 NC_016856.1 hypothetical protein 2833998 588858003336 STM14_3235 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238760.1 2833834 R 588858 CDS YP_005238761.1 378451402 complement(2833998..2834177) 1 NC_016856.1 hypothetical protein 2834177 588858003337 STM14_3236 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238761.1 2833998 R 588858 CDS YP_005238762.1 378451403 2834262..2835884 1 NC_016856.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2835884 nadB 588858003338 nadB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-aspartate oxidase YP_005238762.1 2834262 D 588858 CDS YP_005238763.1 378451404 complement(2835869..2836606) 1 NC_016856.1 similar to Escherichia coli putative enzyme (AAC75628.1); putative transferase 2836606 yfiC 588858003339 yfiC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transferase YP_005238763.1 2835869 R 588858 CDS YP_005238764.1 378451405 complement(2836525..2836725) 1 NC_016856.1 putative methyltransferase 2836725 588858003340 STM14_3239 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative methyltransferase YP_005238764.1 2836525 R 588858 CDS YP_005238765.1 378451406 2836737..2838071 1 NC_016856.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 2838071 srmB 588858003341 srmB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-dependent RNA helicase SrmB YP_005238765.1 2836737 D 588858 CDS YP_005238766.1 378451407 complement(2838089..2838988) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC75630.1); LysR family; putative transcriptional regulator 2838988 yfiE 588858003342 yfiE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005238766.1 2838089 R 588858 CDS YP_005238767.1 378451408 2839091..2839678 1 NC_016856.1 neutral amino-acid efflux protein 2839678 yfiK 588858003343 yfiK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S neutral amino-acid efflux protein YP_005238767.1 2839091 D 588858 CDS YP_005238768.1 378451409 complement(2839740..2840123) 1 NC_016856.1 stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA 2840123 yfiD 588858003344 yfiD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S autonomous glycyl radical cofactor GrcA YP_005238768.1 2839740 R 588858 CDS YP_005238769.1 378451410 2840442..2841131 1 NC_016856.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 2841131 ung 588858003345 ung Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S uracil-DNA glycosylase YP_005238769.1 2840442 D 588858 CDS YP_005238770.1 378451411 complement(2841247..2842284) 1 NC_016856.1 putative methyltransferase 2842284 yfiF 588858003346 yfiF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative methyltransferase YP_005238770.1 2841247 R 588858 CDS YP_005238771.1 378451412 2842488..2842907 1 NC_016856.1 similar to Escherichia coli putative thioredoxin-like protein (AAC75635.1); redox factor; thioredoxin 2 2842907 trxC 588858003347 trxC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thioredoxin 2 YP_005238771.1 2842488 D 588858 CDS YP_005238772.1 378451413 2842980..2843660 1 NC_016856.1 putative cytoplasmic protein 2843660 yfiP 588858003348 yfiP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238772.1 2842980 D 588858 CDS YP_005238773.1 378451414 2843714..2846374 1 NC_016856.1 putative acetyl-CoA synthetase 2846374 yfiQ 588858003349 yfiQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative acetyl-CoA synthetase YP_005238773.1 2843714 D 588858 CDS YP_005238774.1 378451415 2846371..2846505 1 NC_016856.1 hypothetical protein 2846505 588858003350 STM14_3249 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238774.1 2846371 D 588858 CDS YP_005238775.1 378451416 2846489..2847844 1 NC_016856.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2847844 pssA 588858003351 pssA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphatidylserine synthase YP_005238775.1 2846489 D 588858 CDS YP_005238776.1 378451417 2847889..2848212 1 NC_016856.1 hypothetical protein 2848212 yfiM 588858003352 yfiM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238776.1 2847889 D 588858 CDS YP_005238777.1 378451418 complement(2848209..2849510) 1 NC_016856.1 similar to Escherichia coli alpha-ketoglutarate permease (AAC75640.1); MFS family; alpha-ketoglutarate transporter 2849510 kgtP 588858003353 kgtP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S alpha-ketoglutarate transporter YP_005238777.1 2848209 R 588858 CDS YP_005238778.1 378451419 complement(2849614..2850069) 1 NC_016856.1 putative cytoplasmic protein 2850069 588858003354 STM14_3253 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238778.1 2849614 R 588858 CDS YP_005238780.1 378451420 2855709..2855837 1 NC_016856.1 hypothetical protein 2855837 588858003359 STM14_3259 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238780.1 2855709 D 588858 CDS YP_005238781.1 378451421 2855915..2856031 1 NC_016856.1 hypothetical protein 2856031 588858003360 STM14_3260 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238781.1 2855915 D 588858 CDS YP_005238782.1 378451422 complement(2856033..2858606) 1 NC_016856.1 similar to Escherichia coli heat shock protein (AAC75641.1); Hsp 100; part of novel multi-chaperone system with DnaK, DnaJ, and GrpE; protein disaggregation chaperone 2858606 clpB 588858003361 clpB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S protein disaggregation chaperone YP_005238782.1 2856033 R 588858 CDS YP_005238783.1 378451423 complement(2858736..2859467) 1 NC_016856.1 hypothetical protein 2859467 yfiH 588858003362 yfiH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238783.1 2858736 R 588858 CDS YP_005238784.1 378451424 complement(2859464..2860444) 1 NC_016856.1 responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D 2860444 rluD 588858003363 rluD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 23S rRNA pseudouridine synthase D YP_005238784.1 2859464 R 588858 CDS YP_005238785.1 378451425 2860576..2861313 1 NC_016856.1 with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline; outer membrane protein assembly complex subunit YfiO 2861313 yfiO 588858003364 yfiO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane protein assembly complex subunit YfiO YP_005238785.1 2860576 D 588858 CDS YP_005238786.1 378451426 2861585..2861923 1 NC_016856.1 associated with 30S ribosomal subunit; interferes with translation elongation; translation inhibitor protein RaiA 2861923 yfiA 588858003366 yfiA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S translation inhibitor protein RaiA YP_005238786.1 2861585 D 588858 CDS YP_005238787.1 378451427 2861933..2862097 1 NC_016856.1 hypothetical protein 2862097 588858003367 STM14_3267 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238787.1 2861933 D 588858 CDS YP_005238788.1 378451428 2862174..2863334 1 NC_016856.1 catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; bifunctional chorismate mutase/prephenate dehydratase 2863334 pheA 588858003368 pheA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional chorismate mutase/prephenate dehydratase YP_005238788.1 2862174 D 588858 CDS YP_005238789.1 378451429 complement(2863295..2864203) 1 NC_016856.1 putative cytoplasmic protein 2864203 588858003369 STM14_3269 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238789.1 2863295 R 588858 CDS YP_005238790.1 378451430 complement(2864261..2865382) 1 NC_016856.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 2865382 tyrA 588858003370 tyrA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional chorismate mutase/prephenate dehydrogenase YP_005238790.1 2864261 R 588858 CDS YP_005238791.1 378451431 complement(2865392..2866462) 1 NC_016856.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 2866462 aroF 588858003371 aroF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phospho-2-dehydro-3-deoxyheptonate aldolase YP_005238791.1 2865392 R 588858 CDS YP_005238792.1 378451432 2866577..2866735 1 NC_016856.1 hypothetical protein 2866735 588858003372 STM14_3272 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238792.1 2866577 D 588858 CDS YP_005238793.1 378451433 complement(2866637..2866750) 1 NC_016856.1 hypothetical protein 2866750 588858003373 STM14_3273 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238793.1 2866637 R 588858 CDS YP_005238794.1 378451434 2866902..2867420 1 NC_016856.1 hypothetical protein 2867420 yfiR 588858003374 yfiR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238794.1 2866902 D 588858 CDS YP_005238795.1 378451435 2867413..2868633 1 NC_016856.1 hypothetical protein 2868633 yfiN 588858003375 yfiN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238795.1 2867413 D 588858 CDS YP_005238796.1 378451436 complement(2868790..2869137) 1 NC_016856.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 2869137 rplS 588858003376 rplS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L19 YP_005238796.1 2868790 R 588858 CDS YP_005238797.1 378451437 complement(2869178..2869945) 1 NC_016856.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 2869945 trmD 588858003377 trmD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tRNA (guanine-N(1)-)-methyltransferase YP_005238797.1 2869178 R 588858 CDS YP_005238798.1 378451438 complement(2869990..2870538) 1 NC_016856.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein 2870538 rimM 588858003378 rimM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 16S rRNA-processing protein YP_005238798.1 2869990 R 588858 CDS YP_005238799.1 378451439 complement(2870557..2870805) 1 NC_016856.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 2870805 rpsP 588858003379 rpsP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S16 YP_005238799.1 2870557 R 588858 CDS YP_005238800.1 378451440 complement(2870862..2871008) 1 NC_016856.1 hypothetical protein 2871008 588858003380 STM14_3280 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238800.1 2870862 R 588858 CDS YP_005238801.1 378451441 complement(2871119..2872480) 1 NC_016856.1 with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 2872480 ffh 588858003381 ffh Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S signal recognition particle protein YP_005238801.1 2871119 R 588858 CDS YP_005238802.1 378451442 2872506..2872700 1 NC_016856.1 putative cytochrome c-type biogenesis protein (heme exporter) 2872700 588858003382 STM14_3282 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytochrome c-type biogenesis protein (heme exporter) YP_005238802.1 2872506 D 588858 CDS YP_005238803.1 378451443 2872646..2873437 1 NC_016856.1 CorE (gi|4877800); putative cytochrome c-type biogenesis protein; heme exporter protein C; hypothetical protein 2873437 corE 588858003383 corE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238803.1 2872646 D 588858 CDS YP_005238804.1 378451444 2873547..2874743 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC75662.1); hypothetical protein 2874743 yfjD 588858003384 yfjD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238804.1 2873547 D 588858 CDS YP_005238805.1 378451445 2874864..2875469 1 NC_016856.1 putative cytoplasmic protein 2875469 588858003385 STM14_3285 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238805.1 2874864 D 588858 CDS YP_005238806.1 378451446 complement(2875504..2876094) 1 NC_016856.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 2876094 grpE 588858003386 grpE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S heat shock protein GrpE YP_005238806.1 2875504 R 588858 CDS YP_005238807.1 378451447 2876217..2877095 1 NC_016856.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2877095 ppnK 588858003388 ppnK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S inorganic polyphosphate/ATP-NAD kinase YP_005238807.1 2876217 D 588858 CDS YP_005238808.1 378451448 2877181..2878842 1 NC_016856.1 similar to Escherichia coli protein used in recombination and DNA repair (AAC75665.1); recombination and repair protein 2878842 recN 588858003389 recN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S recombination and repair protein YP_005238808.1 2877181 D 588858 CDS YP_005238809.1 378451449 2878991..2879329 1 NC_016856.1 similar to Escherichia coli small membrane protein A (AAC75666.1); hypothetical protein 2879329 smpA 588858003390 smpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238809.1 2878991 D 588858 CDS YP_005238810.1 378451450 complement(2879362..2879469) 1 NC_016856.1 hypothetical protein 2879469 588858003391 STM14_3291 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238810.1 2879362 R 588858 CDS YP_005238811.1 378451451 complement(2879495..2879785) 1 NC_016856.1 hypothetical protein 2879785 yfjF 588858003392 yfjF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238811.1 2879495 R 588858 CDS YP_005238812.1 378451452 complement(2879775..2880251) 1 NC_016856.1 lipid transport protein; hypothetical protein 2880251 yfjG 588858003393 yfjG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238812.1 2879775 R 588858 CDS YP_005238813.1 378451453 2880401..2880883 1 NC_016856.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2880883 smpB 588858003394 smpB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S SsrA-binding protein YP_005238813.1 2880401 D 588858 CDS YP_005238814.1 378451454 2881056..2881160 1 NC_016856.1 hypothetical protein 2881160 588858003395 STM14_3295 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238814.1 2881056 D 588858 CDS YP_005238815.1 378451455 complement(2881388..2881540) 1 NC_016856.1 hypothetical protein 2881540 588858003396 STM14_3296 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238815.1 2881388 R 588858 CDS YP_005238816.1 378451456 2893036..2894445 1 NC_016856.1 similar to Escherichia coli putative resistance protein (AAC73673.1); putative outer membrane efflux protein 2894445 588858003398 STM14_3298 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane efflux protein YP_005238816.1 2893036 D 588858 CDS YP_005238817.1 378451457 2894442..2896622 1 NC_016856.1 similar to Escherichia coli ATP-binding transport protein; multicopy suppressor of htrB (AAC74000.1); putative ABC transporter transmembrane region 2896622 588858003399 STM14_3299 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter transmembrane region YP_005238817.1 2894442 D 588858 CDS YP_005238818.1 378451458 2896630..2897793 1 NC_016856.1 HlyD family secretion protein 2897793 588858003400 STM14_3300 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S HlyD family secretion protein YP_005238818.1 2896630 D 588858 CDS YP_005238819.1 378451459 complement(2898012..2898236) 1 NC_016856.1 hypothetical protein 2898236 588858003401 STM14_3301 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238819.1 2898012 R 588858 CDS YP_005238822.1 378451462 2899686..2900279 1 NC_016856.1 hypothetical protein 2900279 588858003403 STM14_3304 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238822.1 2899686 D 588858 CDS YP_005238823.1 378451463 2900669..2901862 1 NC_016856.1 putative cytoplasmic protein 2901862 588858003404 STM14_3305 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238823.1 2900669 D 588858 CDS YP_005238824.1 378451464 complement(2902197..2903024) 1 NC_016856.1 putative cytoplasmic protein 2903024 588858003405 STM14_3306 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238824.1 2902197 R 588858 CDS YP_005238825.1 378451465 2903475..2903690 1 NC_016856.1 putative cytoplasmic protein 2903690 588858003406 STM14_3307 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238825.1 2903475 D 588858 CDS YP_005238826.1 378451466 2903726..2905795 1 NC_016856.1 putative inner membrane protein 2905795 588858003407 STM14_3308 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238826.1 2903726 D 588858 CDS YP_005238827.1 378451467 2905915..2906040 1 NC_016856.1 hypothetical protein 2906040 588858003408 STM14_3309 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238827.1 2905915 D 588858 CDS YP_005238828.1 378451468 2906298..2907581 1 NC_016856.1 excinuclease; putative ATPase 2907581 588858003409 STM14_3310 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ATPase YP_005238828.1 2906298 D 588858 CDS YP_005238829.1 378451469 2907626..2908444 1 NC_016856.1 putative cytoplasmic protein 2908444 588858003410 STM14_3311 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238829.1 2907626 D 588858 CDS YP_005238830.1 378451470 complement(2908421..2908582) 1 NC_016856.1 hypothetical protein 2908582 588858003411 STM14_3312 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238830.1 2908421 R 588858 CDS YP_005238831.1 378451471 complement(2908598..2908954) 1 NC_016856.1 putative transcriptional regulator 2908954 588858003412 STM14_3313 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005238831.1 2908598 R 588858 CDS YP_005238832.1 378451472 2909049..2909333 1 NC_016856.1 similar to Escherichia coli regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu (AAC76220.1); putative cytoplasmic protein 2909333 588858003413 STM14_3314 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238832.1 2909049 D 588858 CDS YP_005238833.1 378451473 2909446..2909967 1 NC_016856.1 similar to Escherichia coli PTS system glucitol/sorbitol-specific IIC component; one of two (AAC75744.1); putative PTS system glucitol/sorbitol-specific enzyme II 2909967 588858003414 STM14_3315 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative PTS system glucitol/sorbitol-specific enzyme II YP_005238833.1 2909446 D 588858 CDS YP_005238834.1 378451474 2909964..2910338 1 NC_016856.1 similar to Escherichia coli PTS system glucitol/sorbitol-specific enzyme IIA component (AAC75746.1); putative glucitol-specific PTS enzyme III 2910338 588858003415 STM14_3316 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glucitol-specific PTS enzyme III YP_005238834.1 2909964 D 588858 CDS YP_005238835.1 378451475 2910335..2911315 1 NC_016856.1 similar to Escherichia coli PTS system glucitol/sorbitol-specific IIB component and second of two IIC components (AAC75745.1); putative glucitol-specific PTS enzyme III 2911315 588858003416 STM14_3317 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glucitol-specific PTS enzyme III YP_005238835.1 2910335 D 588858 CDS YP_005238836.1 378451476 2911326..2912339 1 NC_016856.1 similar to Escherichia coli putative dehydrogenase (AAC74397.1); putative dehydrogenase 2912339 588858003417 STM14_3318 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dehydrogenase YP_005238836.1 2911326 D 588858 CDS YP_005238837.1 378451477 2912634..2913836 1 NC_016856.1 putative hexulose 6 phosphate synthase 2913836 588858003418 STM14_3319 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hexulose 6 phosphate synthase YP_005238837.1 2912634 D 588858 CDS YP_005238838.1 378451478 complement(2913910..2914545) 1 NC_016856.1 similar to Escherichia coli probable hexulose-6-phosphate synthase (AAC77153.1); putative hexulose 6 phosphate synthase 2914545 588858003419 STM14_3320 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hexulose 6 phosphate synthase YP_005238838.1 2913910 R 588858 CDS YP_005238839.1 378451479 complement(2914569..2915132) 1 NC_016856.1 putative sugar phosphate aminotransferase 2915132 588858003420 STM14_3321 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sugar phosphate aminotransferase YP_005238839.1 2914569 R 588858 CDS YP_005238840.1 378451480 complement(2915132..2915974) 1 NC_016856.1 putative cytoplasmic protein 2915974 588858003421 STM14_3322 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238840.1 2915132 R 588858 CDS YP_005238841.1 378451481 complement(2917712..2917867) 1 NC_016856.1 hypothetical protein 2917867 588858003423 STM14_3324 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238841.1 2917712 R 588858 CDS YP_005238842.1 378451482 2917868..2919547 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC73180.1); putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component 2919547 588858003424 STM14_3325 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component YP_005238842.1 2917868 D 588858 CDS YP_005238843.1 378451483 complement(2919626..2919739) 1 NC_016856.1 hypothetical protein 2919739 588858003425 STM14_3326 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238843.1 2919626 R 588858 CDS YP_005238844.1 378451484 2920664..2921539 1 NC_016856.1 putative integrase 2921539 588858003426 STM14_3327 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative integrase YP_005238844.1 2920664 D 588858 CDS YP_005238845.1 378451485 2921705..2923579 1 NC_016856.1 putative inner membrane protein 2923579 588858003427 STM14_3328 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238845.1 2921705 D 588858 CDS YP_005238846.1 378451486 complement(2923839..2925122) 1 NC_016856.1 putative inner membrane protein 2925122 588858003428 STM14_3329 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238846.1 2923839 R 588858 CDS YP_006894094.1 410023230 2925700..2926296 1 NC_016856.1 P4-type integrase 2926296 588858003429 STM14_06470 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S P4-type integrase YP_006894094.1 2925700 D 588858 CDS YP_005238847.1 378451487 complement(2926750..2927154) 1 NC_016856.1 putative transposase 2927154 588858003430 STM14_3331 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transposase YP_005238847.1 2926750 R 588858 CDS YP_005238848.1 378451488 complement(2927301..2927567) 1 NC_016856.1 putative transposase 2927567 588858003431 STM14_3332 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transposase YP_005238848.1 2927301 R 588858 CDS YP_005238849.1 378451489 complement(2928020..2928658) 1 NC_016856.1 putative cytoplasmic protein 2928658 588858003432 STM14_3333 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238849.1 2928020 R 588858 CDS YP_005238850.1 378451490 complement(2928655..2930637) 1 NC_016856.1 superfamily I; putative DNA/RNA helicase 2930637 588858003433 STM14_3334 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA/RNA helicase YP_005238850.1 2928655 R 588858 CDS YP_005238851.1 378451491 2930916..2931215 1 NC_016856.1 putative transposase 2931215 588858003434 STM14_3335 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transposase YP_005238851.1 2930916 D 588858 CDS YP_005238852.1 378451492 2931212..2932078 1 NC_016856.1 similar to Escherichia coli IS3 putative transposase (AAC75150.1); putative transposase 2932078 588858003435 STM14_3336 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transposase YP_005238852.1 2931212 D 588858 CDS YP_005238853.1 378451493 complement(2932858..2933397) 1 NC_016856.1 repressor of fliC (SW:FLJA_SALTY); flagellar synthesis; phase-1 flagellin repressor 2933397 fljA 588858003436 fljA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phase-1 flagellin repressor YP_005238853.1 2932858 R 588858 CDS YP_005238854.1 378451494 complement(2933465..2934985) 1 NC_016856.1 structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; flagellin 2934985 fljB 588858003437 fljB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flagellin YP_005238854.1 2933465 R 588858 CDS YP_005238855.1 378451495 2935077..2935649 1 NC_016856.1 DNA-invertase hin (SW:HIN_SALTY); regulation of flagellar gene expression by site-specific H inversion of DNA; DNA-invertase Hin 2935649 hin 588858003438 hin Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-invertase Hin YP_005238855.1 2935077 D 588858 CDS YP_005238856.1 378451496 2935806..2935976 1 NC_016856.1 hypothetical protein 2935976 588858003439 STM14_3340 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238856.1 2935806 D 588858 CDS YP_005238857.1 378451497 complement(2936002..2936229) 1 NC_016856.1 hypothetical protein 2936229 588858003440 STM14_3341 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238857.1 2936002 R 588858 CDS YP_005238858.1 378451498 complement(2936297..2936449) 1 NC_016856.1 hypothetical protein 2936449 588858003441 STM14_3342 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238858.1 2936297 R 588858 CDS YP_005238859.1 378451499 2936325..2936507 1 NC_016856.1 hypothetical protein 2936507 588858003442 STM14_3343 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238859.1 2936325 D 588858 CDS YP_005238860.1 378451500 2936612..2937727 1 NC_016856.1 related to UDP-glucuronosyltransferase; putative glycosyl transferase 2937727 iroB 588858003443 iroB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycosyl transferase YP_005238860.1 2936612 D 588858 CDS YP_005238861.1 378451501 2937808..2941461 1 NC_016856.1 similar to Escherichia coli ATP-binding transport protein; multicopy suppressor of htrB (AAC74000.1); putative ABC transporter protein 2941461 iroC 588858003444 iroC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter protein YP_005238861.1 2937808 D 588858 CDS YP_005238862.1 378451502 2941571..2942815 1 NC_016856.1 similar to Escherichia coli enterochelin esterase (AAC73686.1); Fes; enterochelin esterase=-like protein 2942815 iroD 588858003445 iroD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S enterochelin esterase=-like protein YP_005238862.1 2941571 D 588858 CDS YP_005238863.1 378451503 2942847..2943782 1 NC_016856.1 alpha/beta superfamily; putative hydrolase 2943782 iroE 588858003446 iroE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrolase YP_005238863.1 2942847 D 588858 CDS YP_005238864.1 378451504 complement(2943824..2946004) 1 NC_016856.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 2946004 iroN 588858003447 iroN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane receptor FepA YP_005238864.1 2943824 R 588858 CDS YP_005238865.1 378451505 complement(2947037..2948089) 1 NC_016856.1 PipB2; similar to STM1088; contains pentapeptide repeats; secreted by SPI-2 type III secretion; localizes to Salmonella-containing vacuole and host cell membranes; secreted effector protein 2948089 pipB2 588858003449 pipB2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secreted effector protein YP_005238865.1 2947037 R 588858 CDS YP_005238866.1 378451506 2948161..2948499 1 NC_016856.1 hypothetical protein 2948499 588858003450 STM14_3351 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238866.1 2948161 D 588858 CDS YP_005238867.1 378451507 2948608..2949537 1 NC_016856.1 similar to Escherichia coli putative enzyme (AAC73964.1); similar to virK in Shigella; virulence protein 2949537 virK 588858003451 virK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S virulence protein YP_005238867.1 2948608 D 588858 CDS YP_005238868.1 378451508 2949636..2949833 1 NC_016856.1 hypothetical protein 2949833 588858003452 STM14_3353 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238868.1 2949636 D 588858 CDS YP_005238869.1 378451509 2949830..2950726 1 NC_016856.1 putative transcriptional activator 2950726 mig-14 588858003453 mig-14 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional activator YP_005238869.1 2949830 D 588858 CDS YP_005238870.1 378451510 complement(2950805..2950957) 1 NC_016856.1 hypothetical protein 2950957 588858003454 STM14_3355 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238870.1 2950805 R 588858 CDS YP_005238871.1 378451511 2951059..2951226 1 NC_016856.1 hypothetical protein 2951226 588858003455 STM14_3356 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238871.1 2951059 D 588858 CDS YP_005238872.1 378451512 2951242..2951355 1 NC_016856.1 hypothetical protein 2951355 588858003456 STM14_3357 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238872.1 2951242 D 588858 CDS YP_005238873.1 378451513 complement(2951448..2952461) 1 NC_016856.1 putative nickel transporter 2952461 nixA 588858003457 nixA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative nickel transporter YP_005238873.1 2951448 R 588858 CDS YP_005238874.1 378451514 complement(2952594..2954009) 1 NC_016856.1 similar to Escherichia coli putative 2-component sensor protein (AAC76062.1); tricarboxylic transport; regulatory protein 2954009 tctE 588858003458 tctE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S regulatory protein YP_005238874.1 2952594 R 588858 CDS YP_005238875.1 378451515 complement(2953996..2954670) 1 NC_016856.1 transcriptional regulatory protein TctD (SW:TCTD_SALTY); tricarboxylic transport; regulatory protein 2954670 tctD 588858003459 tctD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S regulatory protein YP_005238875.1 2953996 R 588858 CDS YP_005238876.1 378451516 2954825..2955802 1 NC_016856.1 tricarboxylic transport 2955802 588858003460 STM14_3361 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tricarboxylic transport YP_005238876.1 2954825 D 588858 CDS YP_005238877.1 378451517 2955814..2956248 1 NC_016856.1 tricarboxylic transport 2956248 588858003461 STM14_3362 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tricarboxylic transport YP_005238877.1 2955814 D 588858 CDS YP_005238878.1 378451518 2956259..2957773 1 NC_016856.1 tricarboxylic transport 2957773 588858003462 STM14_3363 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tricarboxylic transport YP_005238878.1 2956259 D 588858 CDS YP_005238879.1 378451519 2957937..2958050 1 NC_016856.1 hypothetical protein 2958050 588858003463 STM14_3364 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238879.1 2957937 D 588858 CDS YP_005238880.1 378451520 2958076..2959053 1 NC_016856.1 in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; hypothetical protein 2959053 588858003464 STM14_3365 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238880.1 2958076 D 588858 CDS YP_005238881.1 378451521 2959079..2960347 1 NC_016856.1 hypothetical protein 2960347 ygaF 588858003465 ygaF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238881.1 2959079 D 588858 CDS YP_005238882.1 378451522 2960369..2961817 1 NC_016856.1 catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 2961817 gabD 588858003466 gabD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S succinate-semialdehyde dehydrogenase I YP_005238882.1 2960369 D 588858 CDS YP_005238883.1 378451523 2961832..2963115 1 NC_016856.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 2963115 gabT 588858003467 gabT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-aminobutyrate aminotransferase YP_005238883.1 2961832 D 588858 CDS YP_005238884.1 378451524 2963245..2964645 1 NC_016856.1 similar to Escherichia coli transport permease protein of gamma-aminobutyrate (AAC75710.1); APC family; RpoS dependent; gamma-aminobutyrate transporter 2964645 gabP 588858003468 gabP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S gamma-aminobutyrate transporter YP_005238884.1 2963245 D 588858 CDS YP_005238885.1 378451525 2964687..2965364 1 NC_016856.1 regulator of gab gene expression; DNA-binding transcriptional regulator CsiR 2965364 ygaE 588858003469 ygaE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator CsiR YP_005238885.1 2964687 D 588858 CDS YP_005238886.1 378451526 complement(2965386..2965835) 1 NC_016856.1 putative LysM domain; hypothetical protein 2965835 ygaU 588858003470 ygaU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238886.1 2965386 R 588858 CDS YP_005238887.1 378451527 2965822..2965938 1 NC_016856.1 hypothetical protein 2965938 588858003471 STM14_3372 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238887.1 2965822 D 588858 CDS YP_005238888.1 378451528 complement(2965935..2966093) 1 NC_016856.1 YqaE family; putative transport protein 2966093 yqaE 588858003472 yqaE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005238888.1 2965935 R 588858 CDS YP_005238889.1 378451529 2966276..2966575 1 NC_016856.1 ArsR family; putative regulatory protein 2966575 588858003473 STM14_3374 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005238889.1 2966276 D 588858 CDS YP_005238890.1 378451530 2966585..2967112 1 NC_016856.1 putative rhodanese-like sulfurtransferase 2967112 ygaP 588858003474 ygaP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative rhodanese-like sulfurtransferase YP_005238890.1 2966585 D 588858 CDS YP_005238891.1 378451531 2967191..2967370 1 NC_016856.1 hypothetical protein 2967370 588858003475 STM14_3376 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238891.1 2967191 D 588858 CDS YP_005238892.1 378451532 complement(2967460..2967861) 1 NC_016856.1 DNA-binding protein STPA (SW:STPA_SALTY); has chaperone activity; DNA binding protein 2967861 stpA 588858003476 stpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA binding protein YP_005238892.1 2967460 R 588858 CDS YP_005238893.1 378451533 2968220..2968345 1 NC_016856.1 hypothetical protein 2968345 588858003477 STM14_3378 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238893.1 2968220 D 588858 CDS YP_005238894.1 378451534 2968355..2968534 1 NC_016856.1 hypothetical protein 2968534 588858003478 STM14_3379 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238894.1 2968355 D 588858 CDS YP_005238895.1 378451535 2968560..2969009 1 NC_016856.1 putative inner membrane protein 2969009 588858003479 STM14_3380 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238895.1 2968560 D 588858 CDS YP_005238896.1 378451536 complement(2969044..2969394) 1 NC_016856.1 hypothetical protein 2969394 ygaC 588858003480 ygaC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238896.1 2969044 R 588858 CDS YP_005238897.1 378451537 complement(2969378..2969494) 1 NC_016856.1 hypothetical protein 2969494 588858003481 STM14_3382 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238897.1 2969378 R 588858 CDS YP_005238898.1 378451538 2969544..2969882 1 NC_016856.1 hypothetical protein 2969882 ygaM 588858003482 ygaM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238898.1 2969544 D 588858 CDS YP_005238899.1 378451539 complement(2969966..2971300) 1 NC_016856.1 similar to Escherichia coli putative regulator (AAC77296.1); GntR family; putative regulatory protein 2971300 588858003483 STM14_3384 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005238899.1 2969966 R 588858 CDS YP_005238900.1 378451540 2971389..2971820 1 NC_016856.1 putative cytoplasmic protein 2971820 588858003484 STM14_3385 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238900.1 2971389 D 588858 CDS YP_005238901.1 378451541 2971817..2971993 1 NC_016856.1 hypothetical protein 2971993 588858003485 STM14_3386 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238901.1 2971817 D 588858 CDS YP_005238902.1 378451542 2972092..2972337 1 NC_016856.1 glutaredoxin-like protein NrdH (SW:NRDH_SALTY); hydrogen donor; glutaredoxin-like protein 2972337 nrdH 588858003486 nrdH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutaredoxin-like protein YP_005238902.1 2972092 D 588858 CDS YP_005238903.1 378451543 2972334..2972744 1 NC_016856.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 2972744 nrdI 588858003487 nrdI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonucleotide reductase stimulatory protein YP_005238903.1 2972334 D 588858 CDS YP_005238904.1 378451544 2972717..2974861 1 NC_016856.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2974861 nrdE 588858003488 nrdE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonucleotide-diphosphate reductase subunit alpha YP_005238904.1 2972717 D 588858 CDS YP_005238905.1 378451545 2974872..2975831 1 NC_016856.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 2975831 nrdF 588858003489 nrdF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonucleotide-diphosphate reductase subunit beta YP_005238905.1 2974872 D 588858 CDS YP_005238906.1 378451546 2976186..2977388 1 NC_016856.1 with ProWX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter ATP-binding subunit 2977388 proV 588858003490 proV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycine betaine transporter ATP-binding subunit YP_005238906.1 2976186 D 588858 CDS YP_005238907.1 378451547 2977381..2978445 1 NC_016856.1 with ProVX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter membrane protein 2978445 proW 588858003491 proW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycine betaine transporter membrane protein YP_005238907.1 2977381 D 588858 CDS YP_005238908.1 378451548 2978515..2979510 1 NC_016856.1 with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit 2979510 proX 588858003492 proX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycine betaine transporter periplasmic subunit YP_005238908.1 2978515 D 588858 CDS YP_005238909.1 378451549 2979522..2979632 1 NC_016856.1 hypothetical protein 2979632 588858003493 STM14_3394 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238909.1 2979522 D 588858 CDS YP_005238910.1 378451550 2979675..2980859 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC75728.1); putative inner membrane protein 2980859 588858003494 STM14_3395 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238910.1 2979675 D 588858 CDS YP_005238911.1 378451551 complement(2981060..2981167) 1 NC_016856.1 hypothetical protein 2981167 588858003495 STM14_3396 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238911.1 2981060 R 588858 CDS YP_005238912.1 378451552 2981356..2981886 1 NC_016856.1 DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; transcriptional repressor MprA 2981886 emrR 588858003496 emrR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional repressor MprA YP_005238912.1 2981356 D 588858 CDS YP_005238913.1 378451553 complement(2981900..2982022) 1 NC_016856.1 hypothetical protein 2982022 588858003497 STM14_3398 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238913.1 2981900 R 588858 CDS YP_005238914.1 378451554 2982013..2983185 1 NC_016856.1 similar to Escherichia coli multidrug resistance secretion protein (AAC75732.1); multidrug resistance secretion protein 2983185 emrA 588858003498 emrA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multidrug resistance secretion protein YP_005238914.1 2982013 D 588858 CDS YP_005238915.1 378451555 2983202..2984740 1 NC_016856.1 similar to Escherichia coli multidrug resistance; probably membrane translocase (AAC75733.1); MFS family; putative multidrug transport protein 2984740 emrB 588858003499 emrB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative multidrug transport protein YP_005238915.1 2983202 D 588858 CDS YP_005238916.1 378451556 complement(2984789..2986159) 1 NC_016856.1 putative glycoporin 2986159 588858003500 STM14_3401 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycoporin YP_005238916.1 2984789 R 588858 CDS YP_005238917.1 378451557 complement(2986505..2987020) 1 NC_016856.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 2987020 luxS 588858003501 luxS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S S-ribosylhomocysteinase YP_005238917.1 2986505 R 588858 CDS YP_005238918.1 378451558 complement(2987170..2988726) 1 NC_016856.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 2988726 gshA 588858003502 gshA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamate--cysteine ligase YP_005238918.1 2987170 R 588858 CDS YP_005238919.1 378451559 complement(2988803..2989228) 1 NC_016856.1 putative inner membrane protein 2989228 yqaA 588858003503 yqaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005238919.1 2988803 R 588858 CDS YP_005238920.1 378451560 complement(2989225..2989791) 1 NC_016856.1 YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent; fructose-1-phosphatase 2989791 yqaB 588858003504 yqaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fructose-1-phosphatase YP_005238920.1 2989225 R 588858 CDS YP_005238921.1 378451561 2991063..2991173 1 NC_016856.1 hypothetical protein 2991173 588858003510 STM14_3411 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238921.1 2991063 D 588858 CDS YP_005238922.1 378451562 complement(2991186..2991371) 1 NC_016856.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 2991371 csrA 588858003511 csrA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S carbon storage regulator YP_005238922.1 2991186 R 588858 CDS YP_005238923.1 378451563 complement(2991606..2994236) 1 NC_016856.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 2994236 alaS 588858003512 alaS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S alanyl-tRNA synthetase YP_005238923.1 2991606 R 588858 CDS YP_005238924.1 378451564 2994186..2994350 1 NC_016856.1 hypothetical protein 2994350 588858003513 STM14_3414 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238924.1 2994186 D 588858 CDS YP_005238925.1 378451565 complement(2994269..2994475) 1 NC_016856.1 hypothetical protein 2994475 588858003514 STM14_3415 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238925.1 2994269 R 588858 CDS YP_005238926.1 378451566 complement(2994472..2994972) 1 NC_016856.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 2994972 recX 588858003515 recX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S recombination regulator RecX YP_005238926.1 2994472 R 588858 CDS YP_005238927.1 378451567 complement(2995089..2996150) 1 NC_016856.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 2996150 recA 588858003516 recA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S recombinase A YP_005238927.1 2995089 R 588858 CDS YP_005238928.1 378451568 complement(2996235..2996732) 1 NC_016856.1 competence damage-inducible protein A 2996732 ygaD 588858003517 ygaD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S competence damage-inducible protein A YP_005238928.1 2996235 R 588858 CDS YP_005238929.1 378451569 2996927..2997172 1 NC_016856.1 hypothetical protein 2997172 588858003518 STM14_3419 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238929.1 2996927 D 588858 CDS YP_005238930.1 378451570 complement(2997210..2998289) 1 NC_016856.1 membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B 2998289 mltB 588858003519 mltB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S murein hydrolase B YP_005238930.1 2997210 R 588858 CDS YP_005238931.1 378451571 2998326..2998466 1 NC_016856.1 hypothetical protein 2998466 588858003520 STM14_3421 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238931.1 2998326 D 588858 CDS YP_005238932.1 378451572 2998543..2999106 1 NC_016856.1 similar to Escherichia coli PTS system; one of two glucitol/sorbitol-specific components (AAC75744.1); PTS family; glucitol/sorbitol-specific enzyme IIC component 2999106 srlA 588858003521 srlA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucitol/sorbitol-specific enzyme IIC component YP_005238932.1 2998543 D 588858 CDS YP_005238933.1 378451573 2999103..3000074 1 NC_016856.1 similar to Escherichia coli PTS system; one of two glucitol/sorbitol-specific components (AAC75745.1); PTS family; PTS system glucitol/sorbitol-specific transporter subunit IIB 3000074 srlE 588858003522 srlE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S PTS system glucitol/sorbitol-specific transporter subunit IIB YP_005238933.1 2999103 D 588858 CDS YP_005238934.1 378451574 3000086..3000448 1 NC_016856.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; glucitol/sorbitol-specific PTS system component IIA 3000448 slrB 588858003523 slrB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucitol/sorbitol-specific PTS system component IIA YP_005238934.1 3000086 D 588858 CDS YP_005238935.1 378451575 3000460..3001239 1 NC_016856.1 catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; sorbitol-6-phosphate dehydrogenase 3001239 srlD 588858003524 srlD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sorbitol-6-phosphate dehydrogenase YP_005238935.1 3000460 D 588858 CDS YP_005238936.1 378451576 3001315..3001674 1 NC_016856.1 regulator for glucitol utilization; DNA-binding transcriptional activator GutM 3001674 gutM 588858003525 gutM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional activator GutM YP_005238936.1 3001315 D 588858 CDS YP_005238937.1 378451577 complement(3001727..3001867) 1 NC_016856.1 hypothetical protein 3001867 588858003526 STM14_3427 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238937.1 3001727 R 588858 CDS YP_005238938.1 378451578 3001872..3002645 1 NC_016856.1 regulates genes involved in glucitol utilization; DNA-binding transcriptional repressor SrlR 3002645 srlR 588858003527 srlR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional repressor SrlR YP_005238938.1 3001872 D 588858 CDS YP_005238939.1 378451579 3002638..3003603 1 NC_016856.1 catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate; D-arabinose 5-phosphate isomerase 3003603 gutQ 588858003528 gutQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-arabinose 5-phosphate isomerase YP_005238939.1 3002638 D 588858 CDS YP_005238940.1 378451580 complement(3003600..3005120) 1 NC_016856.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 3005120 ygaA 588858003529 ygaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S anaerobic nitric oxide reductase transcriptional regulator YP_005238940.1 3003600 R 588858 CDS YP_005238941.1 378451581 3005306..3006745 1 NC_016856.1 detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 3006745 588858003530 STM14_3431 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S anaerobic nitric oxide reductase flavorubredoxin YP_005238941.1 3005306 D 588858 CDS YP_005238942.1 378451582 3006742..3007875 1 NC_016856.1 catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 3007875 ygbD 588858003531 ygbD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitric oxide reductase YP_005238942.1 3006742 D 588858 CDS YP_005238943.1 378451583 complement(3007751..3007963) 1 NC_016856.1 hydrogenase maturation protein 3007963 588858003532 STM14_3433 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase maturation protein YP_005238943.1 3007751 R 588858 CDS YP_005238944.1 378451584 complement(3007972..3010212) 1 NC_016856.1 similar to Escherichia coli transcriptional regulatory protein (AAC75754.1); hydrogenase maturation protein 3010212 hypF 588858003533 hypF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase maturation protein YP_005238944.1 3007972 R 588858 CDS YP_005238945.1 378451585 complement(3010214..3010348) 1 NC_016856.1 hypothetical protein 3010348 588858003534 STM14_3435 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238945.1 3010214 R 588858 CDS YP_005238946.1 378451586 complement(3010358..3010903) 1 NC_016856.1 involved in electron transport from formate to hydrogen; electron transport protein HydN 3010903 hydN 588858003535 hydN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S electron transport protein HydN YP_005238946.1 3010358 R 588858 CDS YP_005238947.1 378451587 complement(3010872..3011006) 1 NC_016856.1 hypothetical protein 3011006 588858003536 STM14_3437 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238947.1 3010872 R 588858 CDS YP_005238948.1 378451588 complement(3011104..3011913) 1 NC_016856.1 putative periplasmic protein; hypothetical protein 3011913 588858003537 STM14_3438 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238948.1 3011104 R 588858 CDS YP_005238949.1 378451589 complement(3011940..3012410) 1 NC_016856.1 involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease 3012410 hycI 588858003538 hycI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase 3 maturation protease YP_005238949.1 3011940 R 588858 CDS YP_005238950.1 378451590 complement(3012403..3012813) 1 NC_016856.1 similar to Escherichia coli processing of large subunit HycE of hydrogenase 3; part of the FHL complex (AAC75760.1); hydrogenase 3 large subunit processing protein 3012813 hycH 588858003539 hycH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase 3 large subunit processing protein YP_005238950.1 3012403 R 588858 CDS YP_005238951.1 378451591 complement(3012810..3013577) 1 NC_016856.1 similar to Escherichia coli hydrogenase (AAC75761.1); hydrogenase 3013577 hycG 588858003540 hycG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase YP_005238951.1 3012810 R 588858 CDS YP_005238952.1 378451592 complement(3013577..3014119) 1 NC_016856.1 electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate; formate hydrogenlyase complex iron-sulfur subunit 3014119 hycF 588858003541 hycF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S formate hydrogenlyase complex iron-sulfur subunit YP_005238952.1 3013577 R 588858 CDS YP_005238953.1 378451593 complement(3014129..3015838) 1 NC_016856.1 similar to Escherichia coli large subunit of hydrogenase 3; part of FHL complex (AAC75763.1); hydrogenase 3 large subunit 3015838 hycE 588858003542 hycE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase 3 large subunit YP_005238953.1 3014129 R 588858 CDS YP_005238954.1 378451594 complement(3015856..3016779) 1 NC_016856.1 similar to Escherichia coli membrane-spanning protein of hydrogenase 3; part of FHL complex (AAC75764.1); hydrogenase 3 membrane subunit 3016779 hycD 588858003543 hycD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase 3 membrane subunit YP_005238954.1 3015856 R 588858 CDS YP_005238955.1 378451595 complement(3016782..3018608) 1 NC_016856.1 catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3); formate hydrogenlyase subunit 3 3018608 hycC 588858003544 hycC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S formate hydrogenlyase subunit 3 YP_005238955.1 3016782 R 588858 CDS YP_005238956.1 378451596 complement(3018608..3019216) 1 NC_016856.1 similar to Escherichia coli probable small subunit of hydrogenase-3; iron-sulfur protein; part of FHL complex (AAC75766.1); hydrogenase-3 iron-sulfur subunit 3019216 hycB 588858003545 hycB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase-3 iron-sulfur subunit YP_005238956.1 3018608 R 588858 CDS YP_005238957.1 378451597 complement(3019238..3019342) 1 NC_016856.1 hypothetical protein 3019342 588858003546 STM14_3447 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238957.1 3019238 R 588858 CDS YP_005238958.1 378451598 complement(3019362..3019823) 1 NC_016856.1 regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; formate hydrogenlyase regulatory protein HycA 3019823 hycA 588858003547 hycA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S formate hydrogenlyase regulatory protein HycA YP_005238958.1 3019362 R 588858 CDS YP_005238959.1 378451599 3019869..3020072 1 NC_016856.1 hypothetical protein 3020072 588858003548 STM14_3449 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238959.1 3019869 D 588858 CDS YP_005238960.1 378451600 3020033..3020389 1 NC_016856.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein 3020389 hypA_1 588858003549 hypA_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase nickel incorporation protein YP_005238960.1 3020033 D 588858 CDS YP_005238961.1 378451601 3020458..3021330 1 NC_016856.1 GTP hydrolase involved in nickel liganding into hydrogenases; hydrogenase nickel incorporation protein HypB 3021330 hypB 588858003550 hypB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase nickel incorporation protein HypB YP_005238961.1 3020458 D 588858 CDS YP_005238962.1 378451602 3021321..3021593 1 NC_016856.1 HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase; hydrogenase isoenzymes formation protein 3021593 hypC 588858003551 hypC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase isoenzymes formation protein YP_005238962.1 3021321 D 588858 CDS YP_005238963.1 378451603 3021593..3022714 1 NC_016856.1 similar to Escherichia coli pleiotrophic effects on 3 hydrogenase isozymes (AAC75771.1); putative hydrogenase formation protein 3022714 hypD 588858003552 hypD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrogenase formation protein YP_005238963.1 3021593 D 588858 CDS YP_005238964.1 378451604 3022711..3023721 1 NC_016856.1 similar to Escherichia coli protein which plays a structural role in maturation of all 3 hydrogenases (AAC75772.1); putative hydrogenase formation protein 3023721 hypE 588858003553 hypE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrogenase formation protein YP_005238964.1 3022711 D 588858 CDS YP_005238965.2 410023213 3023955..3026018 1 NC_016856.1 formate hydrogenlyase transcriptional activator for fdhF, hyc and hyp operons EBP family (SW:FHLA_SALTY); formate hydrogen-lyase transcriptional activator 3026018 fhlA 588858003554 fhlA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S formate hydrogen-lyase transcriptional activator YP_005238965.2 3023955 D 588858 CDS YP_005238966.1 378451606 complement(3026080..3026424) 1 NC_016856.1 hypothetical protein 3026424 ygbA 588858003555 ygbA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238966.1 3026080 R 588858 CDS YP_005238967.1 378451607 3026426..3026551 1 NC_016856.1 hypothetical protein 3026551 588858003556 STM14_3457 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238967.1 3026426 D 588858 CDS YP_005238968.1 378451608 3026606..3027523 1 NC_016856.1 SitA (gi|5231094); Salmonella iron transporter; Fur-regulated; putative periplasmic binding protein 3027523 sitA 588858003557 sitA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative periplasmic binding protein YP_005238968.1 3026606 D 588858 CDS YP_005238969.1 378451609 3027520..3028341 1 NC_016856.1 SitB (gi|5231095); Salmonella iron transporter; Fur-regulated; putative ATP-binding protein 3028341 sitB 588858003558 sitB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ATP-binding protein YP_005238969.1 3027520 D 588858 CDS YP_005238970.1 378451610 3028338..3029198 1 NC_016856.1 SitC (gi|5231096); Salmonella iron transporter; Fur-regulated; putative permease 3029198 sitC 588858003559 sitC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005238970.1 3028338 D 588858 CDS YP_005238971.1 378451611 3029189..3030037 1 NC_016856.1 SitD (gi|5231097); Salmonella iron transporter; Fur-regulated; putative permease 3030037 sitD 588858003560 sitD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005238971.1 3029189 D 588858 CDS YP_005238973.1 378451613 complement(3031204..3031959) 1 NC_016856.1 transcriptional regulator SprB (gi|5007028); transcriptional regulator 3031959 sprB 588858003562 sprB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator YP_005238973.1 3031204 R 588858 CDS YP_005238974.1 378451614 3032212..3032319 1 NC_016856.1 hypothetical protein 3032319 588858003563 STM14_3464 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238974.1 3032212 D 588858 CDS YP_005238975.1 378451615 complement(3032344..3033231) 1 NC_016856.1 SprA; HilC (gi|4455106); helix-turn-helix protein; AraC family; activator for invasion genes; derepresses hilA expression; invasion regulatory protein 3033231 hilC 588858003564 hilC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S invasion regulatory protein YP_005238975.1 3032344 R 588858 CDS YP_005238976.1 378451616 complement(3033296..3033403) 1 NC_016856.1 hypothetical protein 3033403 588858003565 STM14_3466 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005238976.1 3033296 R 588858 CDS YP_005238977.1 378451617 complement(3033576..3034028) 1 NC_016856.1 putative cytoplasmic protein 3034028 orgC 588858003566 orgC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238977.1 3033576 R 588858 CDS YP_005238978.1 378451618 complement(3034025..3034705) 1 NC_016856.1 oxygen-regulated invasion protein OrgB (SW:ORGB_SALTY); putative flagellar biosynthesis/type III secretion apparatus; needle complex export protein 3034705 orgB 588858003567 orgB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S needle complex export protein YP_005238978.1 3034025 R 588858 CDS YP_005238979.1 378451619 complement(3034662..3035261) 1 NC_016856.1 oxygen-regulated invasion protein OrgA (SW:ORGA_SALTY); putative flagellar biosynthesis/type III secretion apparatus; needle complex assembly protein 3035261 orgA 588858003568 orgA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S needle complex assembly protein YP_005238979.1 3034662 R 588858 CDS YP_005238980.1 378451620 complement(3035233..3035991) 1 NC_016856.1 PrgK protein precursor (SW:PRGK_SALTY); cell invasion protein; interacts with PrgH and forms oligomeric rings; type III secretion apparatus; needle complex inner membrane lipoprotein 3035991 prgK 588858003569 prgK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S needle complex inner membrane lipoprotein YP_005238980.1 3035233 R 588858 CDS YP_005238981.1 378451621 complement(3035988..3036293) 1 NC_016856.1 PrgJ protein (SW:PRGJ_SALTY); invasion protein; may cap needle complex; type III secretion apparatus; needle complex minor subunit 3036293 prgJ 588858003570 prgJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S needle complex minor subunit YP_005238981.1 3035988 R 588858 CDS YP_005238982.1 378451622 complement(3036312..3036554) 1 NC_016856.1 PrgI protein (SW:PRGI_SALTY); invasion protein; type III secretion apparatus; needle complex major subunit 3036554 prgI 588858003571 prgI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S needle complex major subunit YP_005238982.1 3036312 R 588858 CDS YP_005238983.1 378451623 complement(3036579..3037757) 1 NC_016856.1 PrgH protein (SW:PRGH_SALTY); invasion protein; interacts with PrgK; tetarmerizes; with PrgK forms multimeric ring-shaped structures; type III secretion apparatus; needle complex inner membrane protein 3037757 prgH 588858003572 prgH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S needle complex inner membrane protein YP_005238983.1 3036579 R 588858 CDS YP_005238984.1 378451624 3038073..3039002 1 NC_016856.1 HilD (gi|4455108); helix-turn-helix proteins; AraC family; activator for invasion genes; derepresses hilA expression; invasion protein regulatory protein 3039002 hilD 588858003573 hilD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S invasion protein regulatory protein YP_005238984.1 3038073 D 588858 CDS YP_005238985.1 378451625 3040093..3041754 1 NC_016856.1 Activates the expression of invasion genes and activates the expression of prgHIJK which is part of the pathogenicity island 1 type III secretion system; invasion protein regulator 3041754 hilA 588858003574 hilA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S invasion protein regulator YP_005238985.1 3040093 D 588858 CDS YP_005238986.1 378451626 3041772..3042254 1 NC_016856.1 invasion associated gene protein IagB precursor (SW:IAGB_SALTY); invasion protein precursor 3042254 iagB 588858003575 iagB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S invasion protein precursor YP_005238986.1 3041772 D 588858 CDS YP_005238987.1 378451627 complement(3042308..3043939) 1 NC_016856.1 protein tyrosine phosphatase SptP (gi|1519054); translocated protein; type III secretion; antagonizes bacterial-encoded exchange factors SopE and SopE2 by interfering with stimulation of Cdc42 and Rac1; binds Rac1; protein tyrosine phosphatase/GTPase activating protein 3043939 sptP 588858003576 sptP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S protein tyrosine phosphatase/GTPase activating protein YP_005238987.1 3042308 R 588858 CDS YP_005238988.1 378451628 complement(3043926..3044318) 1 NC_016856.1 SicP (gi|3283218); virulence protein; chaperone for SptP; type III secretion; secretion chaperone 3044318 sicP 588858003577 sicP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secretion chaperone YP_005238988.1 3043926 R 588858 CDS YP_005238989.1 378451629 complement(3044345..3044605) 1 NC_016856.1 putative cytoplasmic protein 3044605 588858003578 STM14_3479 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005238989.1 3044345 R 588858 CDS YP_005238990.1 378451630 complement(3044649..3044897) 1 NC_016856.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 3044897 iacP 588858003579 iacP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acyl carrier protein YP_005238990.1 3044649 R 588858 CDS YP_005238991.1 378451631 complement(3044916..3046973) 1 NC_016856.1 Salmonella invasion protein SipA (gi|1172128); binds actin and promotes polymerization; results in membrane ruffling and internalization due to cytoskeleton rearrangements; secreted effector protein 3046973 sipA 588858003580 sipA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secreted effector protein YP_005238991.1 3044916 R 588858 CDS YP_005238992.1 378451632 complement(3046992..3048023) 1 NC_016856.1 cell invasion protein SspD protein (gi|7443300); involved in translocating secreted proteins to host cells; translocon; type III secretion; translocation machinery component 3048023 sipD 588858003581 sipD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S translocation machinery component YP_005238992.1 3046992 R 588858 CDS YP_005238993.1 378451633 complement(3048094..3049323) 1 NC_016856.1 cell invasion protein SspC (gi|7443298); involved in translocating secreted proteins to host cell; translocon; type III secretion; inserted into host cell plasma membrane; interacts with SipC; translocation machinery component 3049323 sipC 588858003582 sipC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S translocation machinery component YP_005238993.1 3048094 R 588858 CDS YP_005238994.1 378451634 complement(3049351..3051132) 1 NC_016856.1 cell invasion protein SspB (gi|975295); involved in translocating secreted proteins to host cell; translocon; type III secretion; inserted into host cell plasma membrane; interacts with SipB; translocation machinery component 3051132 sipB 588858003583 sipB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S translocation machinery component YP_005238994.1 3049351 R 588858 CDS YP_005238995.1 378451635 complement(3051135..3051632) 1 NC_016856.1 surface presentation of antigens protein SpaT (SW:SPAT_SALTY); surface presentation of antigens; secretory proteins; partitioning factor for SipB/C; prevents premature association of SipB/C; regulates several promoters with InvF; secretion chaperone 3051632 sicA 588858003584 sicA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secretion chaperone YP_005238995.1 3051135 R 588858 CDS YP_005238996.1 378451636 complement(3051770..3052840) 1 NC_016856.1 Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins; surface presentation of antigens protein SpaS 3052840 spaS 588858003585 spaS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S surface presentation of antigens protein SpaS YP_005238996.1 3051770 R 588858 CDS YP_005238997.1 378451637 complement(3052827..3053618) 1 NC_016856.1 surface presentation of antigens protein SpaR (SW:SPAR_SALTY); inner membrane secretory protein; type III secretion apparatus; needle complex export protein 3053618 spaR 588858003586 spaR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S needle complex export protein YP_005238997.1 3052827 R 588858 CDS YP_005238998.1 378451638 complement(3053622..3053882) 1 NC_016856.1 surface presentation of antigens protein SpaQ (SW:SPAQ_SALTY); inner membrane secretory protein; type III secretion apparatus; needle complex export protein 3053882 spaQ 588858003587 spaQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S needle complex export protein YP_005238998.1 3053622 R 588858 CDS YP_005238999.1 378451639 complement(3053908..3054582) 1 NC_016856.1 part of a type III secretory system probably involved in invasion into eukaryotic cells; surface presentation of antigens protein SpaP 3054582 spaP 588858003588 spaP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S surface presentation of antigens protein SpaP YP_005238999.1 3053908 R 588858 CDS YP_005239000.1 378451640 complement(3054572..3055483) 1 NC_016856.1 involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; surface presentation of antigens protein SpaO 3055483 spaO 588858003589 spaO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S surface presentation of antigens protein SpaO YP_005239000.1 3054572 R 588858 CDS YP_005239001.1 378451641 complement(3055483..3056493) 1 NC_016856.1 surface presentation of antigens protein SpaN (SW:SPAN_SALTY); surface presentation of antigens; secretory proteins; needle length control protein 3056493 invJ 588858003590 invJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S needle length control protein YP_005239001.1 3055483 R 588858 CDS YP_005239002.1 378451642 complement(3056493..3056936) 1 NC_016856.1 surface presentation of antigens protein SpaM (SW:SPAM_SALTY); secretory proteins; type III secretion apparatus; needle complex assembly protein 3056936 invI 588858003591 invI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S needle complex assembly protein YP_005239002.1 3056493 R 588858 CDS YP_005239003.1 378451643 complement(3056914..3058209) 1 NC_016856.1 Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase; ATP synthase SpaL 3058209 invC 588858003592 invC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP synthase SpaL YP_005239003.1 3056914 R 588858 CDS YP_005239004.1 378451644 complement(3058206..3058613) 1 NC_016856.1 surface presentation of antigens protein SpaK (SW:SPAK_SALTY); secretory protein; chaperone for SopE/SopE2; type III secretion; secretion chaperone 3058613 invB 588858003593 invB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secretion chaperone YP_005239004.1 3058206 R 588858 CDS YP_005239005.1 378451645 complement(3058637..3060694) 1 NC_016856.1 invasion protein InvA (SW:INVA_SALTY); inner membrane protein; type III secretion apparatus; needle complex export protein 3060694 invA 588858003594 invA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S needle complex export protein YP_005239005.1 3058637 R 588858 CDS YP_005239006.1 378451646 complement(3060719..3061837) 1 NC_016856.1 invasion protein InvE (SW:INVE_SALTY); interacts with SecA-SipB/C complex; essential for translocation into host cells; invasion protein 3061837 invE 588858003595 invE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S invasion protein YP_005239006.1 3060719 R 588858 CDS YP_005239007.1 378451647 complement(3061834..3063522) 1 NC_016856.1 InvG protein precursor (SW:INVG_SALTY); forms ring-shaped structure in outer membrane; requires InvH for stability; type III secretion apparatus; outer membrane secretin precursor 3063522 invG 588858003596 invG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane secretin precursor YP_005239007.1 3061834 R 588858 CDS YP_005239008.1 378451648 complement(3063519..3064268) 1 NC_016856.1 invasion protein InvF (SW:INVF_SALTY); SPI-1 transcription factor; activated by HilA; requires SicA as a co-factor; controls sigD/sopB, sopE and sicAsipBCDA genes; invasion regulatory protein 3064268 invF 588858003597 invF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S invasion regulatory protein YP_005239008.1 3063519 R 588858 CDS YP_005239009.1 378451649 3064626..3065069 1 NC_016856.1 invasion protein InvH precursor (SW:INVH_SALTY); stabilizes InvG secretin; type III secretion apparatus; needle complex outer membrane lipoprotein precursor 3065069 invH 588858003598 invH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S needle complex outer membrane lipoprotein precursor YP_005239009.1 3064626 D 588858 CDS YP_005239010.1 378451650 3065500..3065949 1 NC_016856.1 putative cytoplasmic protein 3065949 588858003599 STM14_3500 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239010.1 3065500 D 588858 CDS YP_005239011.1 378451651 3065934..3066281 1 NC_016856.1 similar to STM2011 and STM2508; putative cytoplasmic protein 3066281 588858003600 STM14_3501 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239011.1 3065934 D 588858 CDS YP_005239012.1 378451652 complement(3066393..3066497) 1 NC_016856.1 hypothetical protein 3066497 588858003601 STM14_3502 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239012.1 3066393 R 588858 CDS YP_005239013.1 378451653 complement(3066554..3066880) 1 NC_016856.1 putative cytoplasmic protein 3066880 588858003602 STM14_3503 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239013.1 3066554 R 588858 CDS YP_005239014.1 378451654 complement(3067340..3067483) 1 NC_016856.1 hypothetical protein 3067483 588858003603 STM14_3504 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239014.1 3067340 R 588858 CDS YP_005239015.1 378451655 3067569..3067859 1 NC_016856.1 putative ABC-type transporter 3067859 588858003604 STM14_3505 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type transporter YP_005239015.1 3067569 D 588858 CDS YP_005239016.1 378451656 3067856..3068383 1 NC_016856.1 putative acetyltransferase 3068383 588858003605 STM14_3506 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative acetyltransferase YP_005239016.1 3067856 D 588858 CDS YP_006894095.1 410023231 complement(3068456..3068632) 1 NC_016856.1 hypothetical protein 3068632 588858003606 STM14_3507 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_006894095.1 3068456 R 588858 CDS YP_005239017.1 378451657 3068687..3068806 1 NC_016856.1 hypothetical protein 3068806 588858003607 STM14_3508 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239017.1 3068687 D 588858 CDS YP_005239018.1 378451658 3069008..3069664 1 NC_016856.1 similar to Escherichia coli protein phosphatase 2 (AAC75776.1); serine/threonine-specific protein phosphatase 2 3069664 pphB 588858003608 pphB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S serine/threonine-specific protein phosphatase 2 YP_005239018.1 3069008 D 588858 CDS YP_005239019.1 378451659 complement(3069836..3070357) 1 NC_016856.1 putative cytoplasmic protein 3070357 588858003609 STM14_3510 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239019.1 3069836 R 588858 CDS YP_005239020.1 378451660 3070516..3073083 1 NC_016856.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein 3073083 mutS 588858003610 mutS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA mismatch repair protein YP_005239020.1 3070516 D 588858 CDS YP_005239021.1 378451661 complement(3073139..3073519) 1 NC_016856.1 putative cytoplasmic protein 3073519 588858003611 STM14_3512 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239021.1 3073139 R 588858 CDS YP_005239022.1 378451662 complement(3073516..3074724) 1 NC_016856.1 similar to Escherichia coli multidrug resistance; probably membrane translocase (AAC75733.1); putative permease 3074724 588858003612 STM14_3513 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005239022.1 3073516 R 588858 CDS YP_005239023.1 378451663 3074812..3075744 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73313.1); LysR family; putative transcriptional regulator 3075744 588858003613 STM14_3514 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239023.1 3074812 D 588858 CDS YP_005239024.1 378451664 complement(3075786..3077282) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC75782.1); putative permease 3077282 588858003614 STM14_3515 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005239024.1 3075786 R 588858 CDS YP_005239025.1 378451665 complement(3077279..3078229) 1 NC_016856.1 similar to Escherichia coli UDP-galactose-4-epimerase (AAC73846.1); putative nucleoside-diphosphate-sugar epimerase 3078229 588858003615 STM14_3516 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative nucleoside-diphosphate-sugar epimerase YP_005239025.1 3077279 R 588858 CDS YP_005239026.1 378451666 complement(3078269..3079045) 1 NC_016856.1 hypothetical protein 3079045 ygbM 588858003616 ygbM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239026.1 3078269 R 588858 CDS YP_005239027.1 378451667 complement(3079050..3079688) 1 NC_016856.1 similar to Escherichia coli putative epimerase/aldolase (AAC75780.1); putative aldolase 3079688 ygbL 588858003617 ygbL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative aldolase YP_005239027.1 3079050 R 588858 CDS YP_005239028.1 378451668 complement(3079685..3080947) 1 NC_016856.1 putative tRNA synthase 3080947 ygbK 588858003618 ygbK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative tRNA synthase YP_005239028.1 3079685 R 588858 CDS YP_005239029.1 378451669 complement(3080941..3081864) 1 NC_016856.1 similar to Escherichia coli putative dehydrogenase (AAC75778.1); 3-hydroxyisobutyrate dehydrogenase 3081864 ygbJ 588858003619 ygbJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-hydroxyisobutyrate dehydrogenase YP_005239029.1 3080941 R 588858 CDS YP_005239030.1 378451670 3082061..3082825 1 NC_016856.1 similar to Escherichia coli putative DeoR-type transcriptional regulator (AAC75777.1); DeoR family; putative regulatory protein 3082825 ygbI 588858003620 ygbI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005239030.1 3082061 D 588858 CDS YP_005239031.1 378451671 complement(3082844..3083248) 1 NC_016856.1 similar to Escherichia coli transcriptional regulator for cryptic hemolysin (AAC74714.1); putative transcriptional regulator 3083248 588858003621 STM14_3522 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239031.1 3082844 R 588858 CDS YP_005239032.1 378451672 3083419..3084012 1 NC_016856.1 similar to Escherichia coli 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (AAC75371.1); putative flavoprotein 3084012 588858003622 STM14_3523 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative flavoprotein YP_005239032.1 3083419 D 588858 CDS YP_005239033.1 378451673 3084012..3085439 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC76846.1); putative 3-polyprenyl-4-hydroxybenzoate decarboxylase 3085439 588858003623 STM14_3524 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative 3-polyprenyl-4-hydroxybenzoate decarboxylase YP_005239033.1 3084012 D 588858 CDS YP_005239034.1 378451674 3085450..3085686 1 NC_016856.1 putative cytoplasmic protein 3085686 588858003624 STM14_3525 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239034.1 3085450 D 588858 CDS YP_005239035.1 378451675 complement(3085731..3086723) 1 NC_016856.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS 3086723 rpoS 588858003625 rpoS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S RNA polymerase sigma factor RpoS YP_005239035.1 3085731 R 588858 CDS YP_005239036.1 378451676 complement(3086786..3087919) 1 NC_016856.1 outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus; lipoprotein NlpD 3087919 nlpD 588858003626 nlpD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipoprotein NlpD YP_005239036.1 3086786 R 588858 CDS YP_005239037.1 378451677 3087981..3088118 1 NC_016856.1 hypothetical protein 3088118 588858003627 STM14_3528 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239037.1 3087981 D 588858 CDS YP_005239038.1 378451678 complement(3088095..3088721) 1 NC_016856.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 3088721 pcm 588858003628 pcm Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S protein-L-isoaspartate O-methyltransferase YP_005239038.1 3088095 R 588858 CDS YP_005239039.1 378451679 complement(3088715..3089476) 1 NC_016856.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 3089476 surE 588858003629 surE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S stationary phase survival protein SurE YP_005239039.1 3088715 R 588858 CDS YP_005239040.1 378451680 complement(3089457..3090506) 1 NC_016856.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 3090506 truD 588858003630 truD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tRNA pseudouridine synthase D YP_005239040.1 3089457 R 588858 CDS YP_005239041.1 378451681 complement(3090503..3090982) 1 NC_016856.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 3090982 ispF 588858003631 ispF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase YP_005239041.1 3090503 R 588858 CDS YP_005239042.1 378451682 complement(3090982..3091692) 1 NC_016856.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 3091692 ispD 588858003632 ispD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_005239042.1 3090982 R 588858 CDS YP_005239043.1 378451683 complement(3091711..3092022) 1 NC_016856.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB 3092022 ftsB 588858003633 ftsB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell division protein FtsB YP_005239043.1 3091711 R 588858 CDS YP_005239044.1 378451684 complement(3092010..3092120) 1 NC_016856.1 hypothetical protein 3092120 588858003634 STM14_3535 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239044.1 3092010 R 588858 CDS YP_005239045.1 378451685 complement(3092213..3092569) 1 NC_016856.1 similar to Escherichia coli putative cytochrome oxidase subunit (AAC75791.1); hypothetical protein 3092569 ygbE 588858003635 ygbE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239045.1 3092213 R 588858 CDS YP_005239046.1 378451686 complement(3092587..3093192) 1 NC_016856.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 3093192 cysC 588858003636 cysC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S adenylylsulfate kinase YP_005239046.1 3092587 R 588858 CDS YP_005239047.1 378451687 complement(3093179..3094618) 1 NC_016856.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 3094618 cysN 588858003637 cysN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sulfate adenylyltransferase subunit 1 YP_005239047.1 3093179 R 588858 CDS YP_005239048.1 378451688 complement(3094628..3095536) 1 NC_016856.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 3095536 cysD 588858003638 cysD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sulfate adenylyltransferase subunit 2 YP_005239048.1 3094628 R 588858 CDS YP_005239049.1 378451689 3095787..3096833 1 NC_016856.1 catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; alkaline phosphatase isozyme conversion aminopeptidase 3096833 iap 588858003639 iap Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S alkaline phosphatase isozyme conversion aminopeptidase YP_005239049.1 3095787 D 588858 CDS YP_005239050.1 378451690 complement(3098420..3098716) 1 NC_016856.1 hypothetical protein 3098716 ygbF 588858003640 ygbF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239050.1 3098420 R 588858 CDS YP_005239051.1 378451691 complement(3098713..3099633) 1 NC_016856.1 putative cytoplasmic protein 3099633 588858003641 STM14_3542 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239051.1 3098713 R 588858 CDS YP_005239052.1 378451692 complement(3099630..3100280) 1 NC_016856.1 putative cytoplasmic protein 3100280 ygcH 588858003642 ygcH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239052.1 3099630 R 588858 CDS YP_005239053.1 378451693 complement(3100262..3101008) 1 NC_016856.1 putative cytoplasmic protein 3101008 588858003643 STM14_3544 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239053.1 3100262 R 588858 CDS YP_005239054.1 378451694 complement(3101019..3102077) 1 NC_016856.1 putative cytoplasmic protein 3102077 yghJ 588858003644 yghJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239054.1 3101019 R 588858 CDS YP_005239055.1 378451695 complement(3102091..3102651) 1 NC_016856.1 putative transposase 3102651 588858003645 STM14_3546 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transposase YP_005239055.1 3102091 R 588858 CDS YP_005239056.1 378451696 complement(3102648..3104204) 1 NC_016856.1 putative cytoplasmic protein 3104204 588858003646 STM14_3547 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239056.1 3102648 R 588858 CDS YP_005239057.1 378451697 complement(3104216..3106879) 1 NC_016856.1 putative helicase 3106879 ygcB 588858003647 ygcB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative helicase YP_005239057.1 3104216 R 588858 CDS YP_005239058.1 378451698 complement(3106978..3107112) 1 NC_016856.1 hypothetical protein 3107112 588858003648 STM14_3549 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239058.1 3106978 R 588858 CDS YP_005239059.1 378451699 3107324..3108277 1 NC_016856.1 hypothetical 36.1 kDa protein in cysH 3'region (ORF4) (SW:YGCC_SALTY); secreted by SPI-1; type III secretion; secreted effector protein 3108277 sopD 588858003649 sopD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S secreted effector protein YP_005239059.1 3107324 D 588858 CDS YP_005239060.1 378451700 complement(3108365..3109099) 1 NC_016856.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 3109099 cysH 588858003650 cysH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoadenosine phosphosulfate reductase YP_005239060.1 3108365 R 588858 CDS YP_005239061.1 378451701 complement(3109175..3110887) 1 NC_016856.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 3110887 cysI 588858003651 cysI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sulfite reductase subunit beta YP_005239061.1 3109175 R 588858 CDS YP_005239062.1 378451702 complement(3110887..3112686) 1 NC_016856.1 catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; sulfite reductase subunit alpha 3112686 cysJ 588858003652 cysJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sulfite reductase subunit alpha YP_005239062.1 3110887 R 588858 CDS YP_005239063.1 378451703 3113110..3113472 1 NC_016856.1 similar to Escherichia coli putative 6-pyruvoyl tetrahydrobiopterin synthase (AAC75807.1); putative 6-pyruvoyl tetrahydrobiopterin synthase 3113472 ptpS 588858003653 ptpS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative 6-pyruvoyl tetrahydrobiopterin synthase YP_005239063.1 3113110 D 588858 CDS YP_005239064.1 378451704 complement(3113560..3114357) 1 NC_016856.1 beta-lactamase superfamily II; putative metal-dependent hydrolase 3114357 588858003654 STM14_3555 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative metal-dependent hydrolase YP_005239064.1 3113560 R 588858 CDS YP_005239065.1 378451705 complement(3116367..3117038) 1 NC_016856.1 putative organic radical activating enzymes; hypothetical protein 3117038 ygcF 588858003655 ygcF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239065.1 3116367 R 588858 CDS YP_005239066.1 378451706 complement(3117174..3118472) 1 NC_016856.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 3118472 eno 588858003656 eno Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphopyruvate hydratase YP_005239066.1 3117174 R 588858 CDS YP_005239067.1 378451707 complement(3118555..3120192) 1 NC_016856.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 3120192 pyrG 588858003657 pyrG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S CTP synthetase YP_005239067.1 3118555 R 588858 CDS YP_005239068.1 378451708 complement(3120420..3121220) 1 NC_016856.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 3121220 mazG 588858003658 mazG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nucleoside triphosphate pyrophosphohydrolase YP_005239068.1 3120420 R 588858 CDS YP_005239069.1 378451709 3121321..3121458 1 NC_016856.1 hypothetical protein 3121458 588858003659 STM14_3560 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239069.1 3121321 D 588858 CDS YP_005239070.1 378451710 3121826..3121978 1 NC_016856.1 putative fimbrial subunit 3121978 588858003660 STM14_3561 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial subunit YP_005239070.1 3121826 D 588858 CDS YP_005239071.1 378451711 complement(3121988..3122278) 1 NC_016856.1 hypothetical protein 3122278 588858003661 STM14_3562 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239071.1 3121988 R 588858 CDS YP_005239072.1 378451712 complement(3122250..3122525) 1 NC_016856.1 contains CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; putative transcriptional regulator 3122525 588858003662 STM14_3563 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239072.1 3122250 R 588858 CDS YP_005239073.1 378451713 complement(3122690..3124924) 1 NC_016856.1 (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; GDP/GTP pyrophosphokinase 3124924 relA 588858003663 relA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S GDP/GTP pyrophosphokinase YP_005239073.1 3122690 R 588858 CDS YP_005239074.1 378451714 complement(3124976..3126271) 1 NC_016856.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 3126271 rumA 588858003664 rumA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 23S rRNA 5-methyluridine methyltransferase YP_005239074.1 3124976 R 588858 CDS YP_005239075.1 378451715 3126329..3129085 1 NC_016856.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 3129085 barA 588858003665 barA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hybrid sensory histidine kinase BarA YP_005239075.1 3126329 D 588858 CDS YP_005239076.1 378451716 complement(3129129..3130271) 1 NC_016856.1 putative glycerate kinase 2 3130271 588858003666 STM14_3567 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycerate kinase 2 YP_005239076.1 3129129 R 588858 CDS YP_005239077.1 378451717 complement(3130349..3131689) 1 NC_016856.1 similar to Escherichia coli putative glucarate dehydratase (AAC75829.1); d-glucarate dehydratase 3131689 gudD 588858003667 gudD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S d-glucarate dehydratase YP_005239077.1 3130349 R 588858 CDS YP_005239078.1 378451718 complement(3131710..3133050) 1 NC_016856.1 similar to Escherichia coli putative glucarate dehydratase (AAC75830.1); putative D-glucarate dehydratase 3133050 ygcY 588858003668 ygcY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative D-glucarate dehydratase YP_005239078.1 3131710 R 588858 CDS YP_005239079.1 378451719 complement(3133047..3134405) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC75831.1); MFS family; putative D-glucarate permease 3134405 gudT 588858003669 gudT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative D-glucarate permease YP_005239079.1 3133047 R 588858 CDS YP_005239080.1 378451720 3134509..3134736 1 NC_016856.1 hypothetical protein 3134736 588858003670 STM14_3571 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239080.1 3134509 D 588858 CDS YP_005239081.1 378451721 complement(3134886..3135335) 1 NC_016856.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 3135335 588858003671 STM14_3572 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flavodoxin YP_005239081.1 3134886 R 588858 CDS YP_005239082.1 378451722 complement(3135354..3136136) 1 NC_016856.1 catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C 3136136 yqcB 588858003672 yqcB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tRNA pseudouridine synthase C YP_005239082.1 3135354 R 588858 CDS YP_005239083.1 378451723 complement(3136136..3136465) 1 NC_016856.1 putative cytoplasmic protein 3136465 yqcC 588858003673 yqcC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239083.1 3136136 R 588858 CDS YP_005239084.1 378451724 complement(3137077..3137622) 1 NC_016856.1 putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 3137622 syd 588858003675 syd Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S SecY interacting protein Syd YP_005239084.1 3137077 R 588858 CDS YP_005239085.1 378451725 3137691..3138539 1 NC_016856.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3138539 queF 588858003676 queF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 7-cyano-7-deazaguanine reductase YP_005239085.1 3137691 D 588858 CDS YP_005239086.1 378451726 3138652..3140016 1 NC_016856.1 putative nucleotide binding protein 3140016 ygdH 588858003677 ygdH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative nucleotide binding protein YP_005239086.1 3138652 D 588858 CDS YP_005239087.1 378451727 3140022..3140165 1 NC_016856.1 hypothetical protein 3140165 588858003678 STM14_3579 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239087.1 3140022 D 588858 CDS YP_005239088.1 378451728 3140255..3140359 1 NC_016856.1 hypothetical protein 3140359 588858003679 STM14_3580 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239088.1 3140255 D 588858 CDS YP_005239089.1 378451729 3140581..3141870 1 NC_016856.1 similar to Escherichia coli probable serine transporter (AAC75838.1); HAAAP family; putative serine transport protein 3141870 sdaC 588858003680 sdaC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative serine transport protein YP_005239089.1 3140581 D 588858 CDS YP_005239090.1 378451730 3141929..3143296 1 NC_016856.1 similar to Escherichia coli L-serine dehydratase; deaminase; L-SD2 (AAC75839.1); L-serine dehydratase/L-threonine deaminase 2 3143296 sdaB 588858003681 sdaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-serine dehydratase/L-threonine deaminase 2 YP_005239090.1 3141929 D 588858 CDS YP_005239091.1 378451731 complement(3143293..3143478) 1 NC_016856.1 hypothetical protein 3143478 588858003682 STM14_3583 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239091.1 3143293 R 588858 CDS YP_005239092.1 378451732 3143407..3144222 1 NC_016856.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3144222 xni 588858003683 xni Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S exonuclease IX YP_005239092.1 3143407 D 588858 CDS YP_005239093.1 378451733 complement(3144205..3144342) 1 NC_016856.1 L-1,2-propanediol oxidoreductase 3144342 588858003684 STM14_3585 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-1,2-propanediol oxidoreductase YP_005239093.1 3144205 R 588858 CDS YP_005239094.1 378451734 complement(3144314..3145462) 1 NC_016856.1 similar to Escherichia coli L-1,2-propanediol oxidoreductase (AAC75841.1); L-1,2-propanediol oxidoreductase 3145462 fucO 588858003685 fucO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-1,2-propanediol oxidoreductase YP_005239094.1 3144314 R 588858 CDS YP_005239095.1 378451735 complement(3145479..3146126) 1 NC_016856.1 catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase 3146126 fucA 588858003686 fucA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-fuculose phosphate aldolase YP_005239095.1 3145479 R 588858 CDS YP_005239096.1 378451736 complement(3146280..3146447) 1 NC_016856.1 hypothetical protein 3146447 588858003687 STM14_3588 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239096.1 3146280 R 588858 CDS YP_005239097.1 378451737 3148029..3149804 1 NC_016856.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 3149804 fucI 588858003689 fucI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-fucose isomerase YP_005239097.1 3148029 D 588858 CDS YP_005239098.1 378451738 3149905..3151323 1 NC_016856.1 similar to Escherichia coli L-fuculokinase (AAC75845.1); L-fuculokinase 3151323 fucK 588858003690 fucK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-fuculokinase YP_005239098.1 3149905 D 588858 CDS YP_005239099.1 378451739 3151325..3151747 1 NC_016856.1 similar to Escherichia coli protein of fucose operon (AAC75846.1); putative L-fucose-binding protein 3151747 fucU 588858003691 fucU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative L-fucose-binding protein YP_005239099.1 3151325 D 588858 CDS YP_005239100.1 378451740 3151805..3152515 1 NC_016856.1 regulates expression of genes involved in L-fucose utilization; DNA-binding transcriptional activator FucR 3152515 fucR 588858003692 fucR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional activator FucR YP_005239100.1 3151805 D 588858 CDS YP_005239101.1 378451741 complement(3152574..3153674) 1 NC_016856.1 putative RNA 2'-O-ribose methyltransferase 3153674 ygdE 588858003693 ygdE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative RNA 2'-O-ribose methyltransferase YP_005239101.1 3152574 R 588858 CDS YP_005239102.1 378451742 complement(3153667..3154062) 1 NC_016856.1 hypothetical protein 3154062 ygdD 588858003694 ygdD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239102.1 3153667 R 588858 CDS YP_005239103.1 378451743 complement(3154081..3154998) 1 NC_016856.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 3154998 gcvA 588858003695 gcvA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional activator GcvA YP_005239103.1 3154081 R 588858 CDS YP_005239104.1 378451744 complement(3155345..3155572) 1 NC_016856.1 putative lipoprotein 3155572 ygdI 588858003696 ygdI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative lipoprotein YP_005239104.1 3155345 R 588858 CDS YP_005239105.1 378451745 3155765..3156970 1 NC_016856.1 cysteine sulfinate desulfinase 3156970 csdA 588858003697 csdA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cysteine sulfinate desulfinase YP_005239105.1 3155765 D 588858 CDS YP_005239106.1 378451746 3156970..3157413 1 NC_016856.1 similar to SufE; putative FeS center assembly protein 3157413 ygdK 588858003698 ygdK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative FeS center assembly protein YP_005239106.1 3156970 D 588858 CDS YP_005239107.1 378451747 3157563..3157685 1 NC_016856.1 hypothetical protein 3157685 588858003699 STM14_3600 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239107.1 3157563 D 588858 CDS YP_005239108.1 378451748 3157686..3158600 1 NC_016856.1 putative integral membrane protein 3158600 588858003700 STM14_3601 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative integral membrane protein YP_005239108.1 3157686 D 588858 CDS YP_005239109.1 378451749 complement(3158652..3159458) 1 NC_016856.1 similar to Escherichia coli putative enzyme (AAC75854.1); hypothetical protein 3159458 ygdL 588858003701 ygdL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239109.1 3158652 R 588858 CDS YP_005239110.1 378451750 complement(3159568..3160665) 1 NC_016856.1 membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A 3160665 mltA 588858003702 mltA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S murein transglycosylase A YP_005239110.1 3159568 R 588858 CDS YP_005239111.1 378451751 complement(3161165..3162418) 1 NC_016856.1 similar to Escherichia coli putative amidase (AAC75856.1); N-acetylmuramoyl-L-alanine amidase 3162418 amiC 588858003705 amiC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N-acetylmuramoyl-L-alanine amidase YP_005239111.1 3161165 R 588858 CDS YP_005239112.1 378451752 3162651..3163982 1 NC_016856.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 3163982 argA 588858003706 argA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N-acetylglutamate synthase YP_005239112.1 3162651 D 588858 CDS YP_005239113.1 378451753 complement(3164085..3165920) 1 NC_016856.1 helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha 3165920 recD 588858003707 recD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S exonuclease V subunit alpha YP_005239113.1 3164085 R 588858 CDS YP_005239114.1 378451754 complement(3165917..3169462) 1 NC_016856.1 helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta 3169462 recB 588858003708 recB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S exonuclease V subunit beta YP_005239114.1 3165917 R 588858 CDS YP_005239115.1 378451755 complement(3169455..3172343) 1 NC_016856.1 similar to Escherichia coli protease III (AAC75860.1); protease III 3172343 ptr 588858003709 ptr Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S protease III YP_005239115.1 3169455 R 588858 CDS YP_005239116.1 378451756 complement(3172521..3175892) 1 NC_016856.1 catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma 3175892 recC 588858003710 recC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S exonuclease V subunit gamma YP_005239116.1 3172521 R 588858 CDS YP_005239117.1 378451757 complement(3175908..3176228) 1 NC_016856.1 similar to Escherichia coli prepilin peptidase dependent protein C (AAC75862.1); putative component involved type IV pilin biogenesis; hypothetical protein 3176228 ppdC 588858003711 ppdC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239117.1 3175908 R 588858 CDS YP_005239118.1 378451758 complement(3176213..3176620) 1 NC_016856.1 hypothetical protein 3176620 ygdB 588858003712 ygdB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239118.1 3176213 R 588858 CDS YP_005239119.1 378451759 complement(3176617..3177180) 1 NC_016856.1 similar to Escherichia coli prepilin peptidase dependent protein B (AAC75864.1); putative component involved in type IV pilin biogenesis; hypothetical protein 3177180 ppdB 588858003713 ppdB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239119.1 3176617 R 588858 CDS YP_005239120.1 378451760 complement(3177171..3177641) 1 NC_016856.1 similar to Escherichia coli prepilin peptidase dependent protein A (AAC75865.1); putative component innvolved in type IV pilin biogenesis; hypothetical protein 3177641 ppdA 588858003714 ppdA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239120.1 3177171 R 588858 CDS YP_005239121.1 378451761 3177651..3177833 1 NC_016856.1 hypothetical protein 3177833 588858003715 STM14_3616 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239121.1 3177651 D 588858 CDS YP_005239122.1 378451762 complement(3177826..3178620) 1 NC_016856.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 3178620 thyA 588858003716 thyA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thymidylate synthase YP_005239122.1 3177826 R 588858 CDS YP_005239123.1 378451763 complement(3178627..3179502) 1 NC_016856.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3179502 lgt 588858003717 lgt Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S prolipoprotein diacylglyceryl transferase YP_005239123.1 3178627 R 588858 CDS YP_005239124.1 378451764 complement(3179499..3179657) 1 NC_016856.1 hypothetical protein 3179657 588858003718 STM14_3619 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239124.1 3179499 R 588858 CDS YP_005239125.1 378451765 complement(3179718..3181964) 1 NC_016856.1 member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein 3181964 ptsP 588858003719 ptsP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein YP_005239125.1 3179718 R 588858 CDS YP_005239126.1 378451766 complement(3181977..3182507) 1 NC_016856.1 Hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 3182507 ygdP 588858003720 ygdP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dinucleoside polyphosphate hydrolase YP_005239126.1 3181977 R 588858 CDS YP_005239127.1 378451767 complement(3182548..3182661) 1 NC_016856.1 hypothetical protein 3182661 588858003721 STM14_3622 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239127.1 3182548 R 588858 CDS YP_005239128.1 378451768 3182641..3182757 1 NC_016856.1 hypothetical protein 3182757 588858003722 STM14_3623 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239128.1 3182641 D 588858 CDS YP_005239129.1 378451769 complement(3182858..3183004) 1 NC_016856.1 hypothetical protein 3183004 588858003723 STM14_3624 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239129.1 3182858 R 588858 CDS YP_005239130.1 378451770 3183029..3183154 1 NC_016856.1 hypothetical protein 3183154 588858003724 STM14_3625 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239130.1 3183029 D 588858 CDS YP_005239131.1 378451771 complement(3183053..3183160) 1 NC_016856.1 hypothetical protein 3183160 588858003725 STM14_3626 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239131.1 3183053 R 588858 CDS YP_005239132.1 378451772 3183190..3183885 1 NC_016856.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3183885 mutH 588858003726 mutH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA mismatch repair protein YP_005239132.1 3183190 D 588858 CDS YP_005239133.1 378451773 3183985..3184095 1 NC_016856.1 hypothetical protein 3184095 588858003727 STM14_3628 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239133.1 3183985 D 588858 CDS YP_005239134.1 378451774 3184067..3184780 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC75871.1); integral membrane protein; putative transport protein 3184780 ygdQ 588858003728 ygdQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005239134.1 3184067 D 588858 CDS YP_005239135.1 378451775 3184950..3185168 1 NC_016856.1 POT family; putative peptide transport protein 3185168 ygdR 588858003729 ygdR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative peptide transport protein YP_005239135.1 3184950 D 588858 CDS YP_005239136.1 378451776 3185172..3185342 1 NC_016856.1 hypothetical protein 3185342 588858003730 STM14_3631 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239136.1 3185172 D 588858 CDS YP_005239137.1 378451777 3185359..3186399 1 NC_016856.1 complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; putative aldo-keto reductase 3186399 tas 588858003731 tas Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative aldo-keto reductase YP_005239137.1 3185359 D 588858 CDS YP_005239138.1 378451778 complement(3186486..3187688) 1 NC_016856.1 similar to Escherichia coli putative resistance protein (AAC75874.1); hypothetical protein 3187688 ygeD 588858003732 ygeD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239138.1 3186486 R 588858 CDS YP_005239139.1 378451779 complement(3187681..3189840) 1 NC_016856.1 Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase 3189840 aas 588858003733 aas Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase YP_005239139.1 3187681 R 588858 CDS YP_005239140.1 378451780 complement(3190309..3190434) 1 NC_016856.1 hypothetical protein 3190434 588858003734 STM14_3635 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239140.1 3190309 R 588858 CDS YP_005239141.1 378451781 3190433..3191461 1 NC_016856.1 controls transcription of galETKM; DNA-binding transcriptional regulator GalR 3191461 galR 588858003735 galR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator GalR YP_005239141.1 3190433 D 588858 CDS YP_005239142.1 378451782 3191472..3192494 1 NC_016856.1 similar to Escherichia coli ascBF operon repressor (AAC75756.1); putative transcriptional regulator 3192494 588858003736 STM14_3637 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239142.1 3191472 D 588858 CDS YP_005239143.1 378451783 complement(3192504..3193766) 1 NC_016856.1 catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase 3193766 lysA 588858003737 lysA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S diaminopimelate decarboxylase YP_005239143.1 3192504 R 588858 CDS YP_005239144.1 378451784 3193884..3194819 1 NC_016856.1 activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; DNA-binding transcriptional regulator LysR 3194819 lysR 588858003738 lysR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator LysR YP_005239144.1 3193884 D 588858 CDS YP_005239145.1 378451785 complement(3194791..3195498) 1 NC_016856.1 similar to Escherichia coli putative resistance proteins (AAC75879.1); putative racemase 3195498 ygeA 588858003739 ygeA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative racemase YP_005239145.1 3194791 R 588858 CDS YP_005239146.1 378451786 complement(3195611..3197029) 1 NC_016856.1 similar to Escherichia coli low-affinity L-arabinose transport system proton symport protein (AAC75880.1); MFS family; L-arabinose/proton symport protein 3197029 araE 588858003740 araE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-arabinose/proton symport protein YP_005239146.1 3195611 R 588858 CDS YP_005239147.1 378451787 complement(3197131..3197247) 1 NC_016856.1 hypothetical protein 3197247 588858003741 STM14_3642 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239147.1 3197131 R 588858 CDS YP_005239148.1 378451788 complement(3197383..3198144) 1 NC_016856.1 catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase 3198144 kduD 588858003742 kduD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-deoxy-D-gluconate 3-dehydrogenase YP_005239148.1 3197383 R 588858 CDS YP_005239149.1 378451789 complement(3198201..3199037) 1 NC_016856.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 3199037 kduI 588858003743 kduI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 5-keto-4-deoxyuronate isomerase YP_005239149.1 3198201 R 588858 CDS YP_005239150.1 378451790 complement(3199028..3199198) 1 NC_016856.1 hypothetical protein 3199198 588858003744 STM14_3645 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239150.1 3199028 R 588858 CDS YP_005239151.1 378451791 complement(3199467..3200645) 1 NC_016856.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 3200645 yqeF 588858003745 yqeF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acetyl-CoA acetyltransferase YP_005239151.1 3199467 R 588858 CDS YP_005239152.1 378451792 complement(3200768..3201631) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73606.1); LysR family; putative transcriptional regulator 3201631 588858003746 STM14_3647 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239152.1 3200768 R 588858 CDS YP_005239153.1 378451793 3201708..3202190 1 NC_016856.1 putative inner membrane protein 3202190 588858003747 STM14_3648 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239153.1 3201708 D 588858 CDS YP_005239154.1 378451794 3202193..3202315 1 NC_016856.1 hypothetical protein 3202315 588858003748 STM14_3649 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239154.1 3202193 D 588858 CDS YP_005239155.1 378451795 3202332..3203561 1 NC_016856.1 similar to Escherichia coli putative transporter protein (AAC75884.1); putative transport protein 3203561 588858003749 STM14_3650 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005239155.1 3202332 D 588858 CDS YP_005239156.1 378451796 complement(3203592..3203864) 1 NC_016856.1 putative cytoplasmic protein 3203864 yohL 588858003750 yohL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239156.1 3203592 R 588858 CDS YP_005239157.1 378451797 3203986..3204894 1 NC_016856.1 membrane protein conferring nickel and cobalt resistance; nickel/cobalt efflux protein RcnA 3204894 yohM 588858003751 yohM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nickel/cobalt efflux protein RcnA YP_005239157.1 3203986 D 588858 CDS YP_005239158.1 378451798 complement(3205104..3205862) 1 NC_016856.1 similar to transcriptional regulator SprB (gi|5007028); putative cytoplasmic protein 3205862 588858003752 STM14_3653 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239158.1 3205104 R 588858 CDS YP_005239159.1 378451799 complement(3205849..3206361) 1 NC_016856.1 hypothetical protein 3206361 588858003753 STM14_3654 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239159.1 3205849 R 588858 CDS YP_005239160.1 378451800 complement(3206505..3207581) 1 NC_016856.1 putative outer membrane protein 3207581 588858003754 STM14_3655 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005239160.1 3206505 R 588858 CDS YP_005239161.1 378451801 complement(3207578..3208321) 1 NC_016856.1 similar to Escherichia coli putative chaperone (AAC73811.1); putative fimbrial chaperone 3208321 stdC 588858003755 stdC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial chaperone YP_005239161.1 3207578 R 588858 CDS YP_005239162.1 378451802 complement(3208362..3210851) 1 NC_016856.1 similar to Escherichia coli putative membrane protein (AAC76082.1); putative outer membrane usher protein 3210851 stdB 588858003756 stdB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane usher protein YP_005239162.1 3208362 R 588858 CDS YP_005239163.1 378451803 3210549..3210968 1 NC_016856.1 hypothetical protein 3210968 588858003757 STM14_3658 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239163.1 3210549 D 588858 CDS YP_005239164.2 410023214 complement(3210971..3211555) 1 NC_016856.1 similar to Escherichia coli putative fimbrial-like protein (AAC73813.1); putative fimbrial-like protein 3211555 stdA 588858003758 stdA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial-like protein YP_005239164.2 3210971 R 588858 CDS YP_005239165.1 378451805 complement(3212274..3212906) 1 NC_016856.1 hypothetical protein 3212906 588858003759 STM14_3660 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239165.1 3212274 R 588858 CDS YP_005239166.1 378451806 complement(3212953..3213489) 1 NC_016856.1 similar to Escherichia coli outer membrane protein X (AAC73901.1); Ail/OmpX-like protein 3213489 588858003760 STM14_3661 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Ail/OmpX-like protein YP_005239166.1 3212953 R 588858 CDS YP_005239167.1 378451807 complement(3213534..3213719) 1 NC_016856.1 hypothetical protein 3213719 588858003761 STM14_3662 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239167.1 3213534 R 588858 CDS YP_005239168.1 378451808 complement(3214295..3214693) 1 NC_016856.1 stability determinant protein; plasmid maintenance protein 3214693 588858003762 STM14_3663 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S plasmid maintenance protein YP_005239168.1 3214295 R 588858 CDS YP_005239169.1 378451809 complement(3214693..3215070) 1 NC_016856.1 putative virulence-associated protein 3215070 588858003763 STM14_3664 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative virulence-associated protein YP_005239169.1 3214693 R 588858 CDS YP_006894096.1 410023232 3215088..3215348 1 NC_016856.1 endonuclease 3215348 588858003764 STM14_3665 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S endonuclease YP_006894096.1 3215088 D 588858 CDS YP_005239170.1 378451810 complement(3215425..3215670) 1 NC_016856.1 hypothetical protein 3215670 588858003765 STM14_3666 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239170.1 3215425 R 588858 CDS YP_005239171.1 378451811 3215623..3216429 1 NC_016856.1 putative inner membrane protein 3216429 588858003766 STM14_3667 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239171.1 3215623 D 588858 CDS YP_005239172.1 378451812 complement(3216714..3217472) 1 NC_016856.1 similar to Escherichia coli putative lipoprotein (AAC75903.1); putative metalloendopeptidase 3217472 588858003768 STM14_3669 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative metalloendopeptidase YP_005239172.1 3216714 R 588858 CDS YP_005239173.1 378451813 3217519..3217686 1 NC_016856.1 hypothetical protein 3217686 588858003769 STM14_3670 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239173.1 3217519 D 588858 CDS YP_005239174.1 378451814 3217737..3218282 1 NC_016856.1 catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; isopentenyl-diphosphate delta-isomerase 3218282 idi 588858003770 idi Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S isopentenyl-diphosphate delta-isomerase YP_005239174.1 3217737 D 588858 CDS YP_005239175.1 378451815 complement(3218358..3219875) 1 NC_016856.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 3219875 lysS 588858003771 lysS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lysyl-tRNA synthetase YP_005239175.1 3218358 R 588858 CDS YP_005239176.1 378451816 complement(3219885..3220961) 1 NC_016856.1 peptide chain release factor 2; RF-2 (SW:RF2_SALTY); peptide chain release factor 2 3220961 prfB 588858003772 prfB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptide chain release factor 2 YP_005239176.1 3219885 R 588858 CDS YP_005239177.1 378451817 complement(3221088..3222821) 1 NC_016856.1 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ 3222821 recJ 588858003773 recJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ssDNA exonuclease RecJ YP_005239177.1 3221088 R 588858 CDS YP_005239178.1 378451818 complement(3222827..3223540) 1 NC_016856.1 DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; thiol:disulfide interchange protein DsbC 3223540 dsbC 588858003774 dsbC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiol:disulfide interchange protein DsbC YP_005239178.1 3222827 R 588858 CDS YP_005239179.1 378451819 complement(3223564..3224460) 1 NC_016856.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 3224460 xerD 588858003775 xerD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S site-specific tyrosine recombinase XerD YP_005239179.1 3223564 R 588858 CDS YP_005239180.1 378451820 3224573..3225094 1 NC_016856.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin FldB 3225094 fldB 588858003776 fldB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flavodoxin FldB YP_005239180.1 3224573 D 588858 CDS YP_005239181.1 378451821 complement(3225147..3225560) 1 NC_016856.1 putative inner membrane protein 3225560 ygfX 588858003777 ygfX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239181.1 3225147 R 588858 CDS YP_005239182.1 378451822 complement(3225541..3225807) 1 NC_016856.1 hypothetical protein 3225807 ygfY 588858003778 ygfY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239182.1 3225541 R 588858 CDS YP_005239183.1 378451823 3225806..3226042 1 NC_016856.1 hypothetical protein 3226042 588858003779 STM14_3680 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239183.1 3225806 D 588858 CDS YP_005239184.1 378451824 3226057..3227037 1 NC_016856.1 physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator; putative global regulator 3227037 ygfZ 588858003780 ygfZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative global regulator YP_005239184.1 3226057 D 588858 CDS YP_005239185.1 378451825 complement(3227153..3227812) 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC75937.1); putative hemolysin 3227812 yqfA 588858003781 yqfA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hemolysin YP_005239185.1 3227153 R 588858 CDS YP_005239186.1 378451826 complement(3227976..3228287) 1 NC_016856.1 hypothetical protein 3228287 yqfB 588858003782 yqfB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239186.1 3227976 R 588858 CDS YP_005239187.1 378451827 3228446..3229879 1 NC_016856.1 similar to Escherichia coli 6-phospho-beta-glucosidase A; cryptic (AAC75939.1); 6-phospho-beta-glucosidase 3229879 bglA 588858003783 bglA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 6-phospho-beta-glucosidase YP_005239187.1 3228446 D 588858 CDS YP_005239188.1 378451828 complement(3229927..3230820) 1 NC_016856.1 putative outer membrane protein 3230820 588858003784 STM14_3685 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005239188.1 3229927 R 588858 CDS YP_005239189.1 378451829 complement(3230904..3231050) 1 NC_016856.1 immunoglobulin VH domain protein 3231050 588858003785 STM14_3686 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S immunoglobulin VH domain protein YP_005239189.1 3230904 R 588858 CDS YP_005239190.1 378451830 complement(3231276..3234149) 1 NC_016856.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 3234149 gcvP 588858003786 gcvP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycine dehydrogenase YP_005239190.1 3231276 R 588858 CDS YP_005239191.1 378451831 complement(3234312..3234701) 1 NC_016856.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 3234701 gcvH 588858003787 gcvH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycine cleavage system protein H YP_005239191.1 3234312 R 588858 CDS YP_005239192.1 378451832 complement(3234727..3235821) 1 NC_016856.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 3235821 gcvT 588858003788 gcvT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycine cleavage system aminomethyltransferase T YP_005239192.1 3234727 R 588858 CDS YP_005239193.1 378451833 3235813..3235968 1 NC_016856.1 hypothetical protein 3235968 588858003789 STM14_3690 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239193.1 3235813 D 588858 CDS YP_005239194.1 378451834 3236175..3236279 1 NC_016856.1 hypothetical protein 3236279 588858003790 STM14_3691 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239194.1 3236175 D 588858 CDS YP_005239195.1 378451835 complement(3236276..3237478) 1 NC_016856.1 hypothetical protein 3237478 visC 588858003791 visC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239195.1 3236276 R 588858 CDS YP_005239196.1 378451836 3237457..3237624 1 NC_016856.1 hypothetical protein 3237624 588858003792 STM14_3693 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239196.1 3237457 D 588858 CDS YP_005239197.1 378451837 complement(3237604..3238782) 1 NC_016856.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 3238782 ubiH 588858003793 ubiH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-octaprenyl-6-methoxyphenyl hydroxylase YP_005239197.1 3237604 R 588858 CDS YP_005239198.1 378451838 complement(3238779..3240095) 1 NC_016856.1 exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; proline aminopeptidase P II 3240095 pepP 588858003794 pepP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S proline aminopeptidase P II YP_005239198.1 3238779 R 588858 CDS YP_005239199.1 378451839 complement(3240121..3240699) 1 NC_016856.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 3240699 ygfB 588858003795 ygfB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239199.1 3240121 R 588858 CDS YP_005239200.1 378451840 3240866..3241195 1 NC_016856.1 Z-ring-associated protein 3241195 ygfE 588858003796 ygfE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Z-ring-associated protein YP_005239200.1 3240866 D 588858 CDS YP_005239201.1 378451841 3241489..3242037 1 NC_016856.1 ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; putative ligase 3242037 ygfA 588858003797 ygfA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ligase YP_005239201.1 3241489 D 588858 CDS YP_005239202.1 378451842 complement(3242418..3243650) 1 NC_016856.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 3243650 serA 588858003798 serA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-3-phosphoglycerate dehydrogenase YP_005239202.1 3242418 R 588858 CDS YP_005239203.1 378451843 3243685..3243795 1 NC_016856.1 hypothetical protein 3243795 588858003799 STM14_3700 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239203.1 3243685 D 588858 CDS YP_005239204.1 378451844 complement(3243916..3244575) 1 NC_016856.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 3244575 rpiA 588858003800 rpiA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribose-5-phosphate isomerase A YP_005239204.1 3243916 R 588858 CDS YP_005239205.1 378451845 3244595..3244732 1 NC_016856.1 hypothetical protein 3244732 588858003801 STM14_3702 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239205.1 3244595 D 588858 CDS YP_005239206.1 378451846 3244729..3245622 1 NC_016856.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3245622 iciA 588858003802 iciA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chromosome replication initiation inhibitor protein YP_005239206.1 3244729 D 588858 CDS YP_005239207.1 378451847 3245634..3245885 1 NC_016856.1 hypothetical protein 3245885 588858003803 STM14_3704 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239207.1 3245634 D 588858 CDS YP_005239208.1 378451848 complement(3245888..3246634) 1 NC_016856.1 putative periplasmic immunogenic protein; hypothetical protein 3246634 yggE 588858003804 yggE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239208.1 3245888 R 588858 CDS YP_005239209.1 378451849 complement(3246728..3247363) 1 NC_016856.1 Involved in the export of arginine; arginine exporter protein 3247363 yggA 588858003805 yggA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S arginine exporter protein YP_005239209.1 3246728 R 588858 CDS YP_005239210.1 378451850 complement(3247563..3248423) 1 NC_016856.1 participates in the regulation of osmotic pressure changes within the cel; mechanosensitive channel MscS 3248423 yggB 588858003806 yggB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S mechanosensitive channel MscS YP_005239210.1 3247563 R 588858 CDS YP_005239211.1 378451851 complement(3248650..3249729) 1 NC_016856.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 3249729 fba 588858003807 fba Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fructose-bisphosphate aldolase YP_005239211.1 3248650 R 588858 CDS YP_005239212.1 378451852 complement(3249831..3250994) 1 NC_016856.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3250994 pgk 588858003808 pgk Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoglycerate kinase YP_005239212.1 3249831 R 588858 CDS YP_005239213.1 378451853 complement(3251016..3252062) 1 NC_016856.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 3252062 epd 588858003809 epd Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S erythrose 4-phosphate dehydrogenase YP_005239213.1 3251016 R 588858 CDS YP_005239214.1 378451854 3252233..3252433 1 NC_016856.1 hypothetical protein 3252433 588858003810 STM14_3711 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239214.1 3252233 D 588858 CDS YP_005239215.1 378451855 3252436..3252861 1 NC_016856.1 putative DNA-binding protein 3252861 588858003811 STM14_3712 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA-binding protein YP_005239215.1 3252436 D 588858 CDS YP_005239216.1 378451856 3252887..3253465 1 NC_016856.1 putative inner membrane protein 3253465 588858003812 STM14_3713 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239216.1 3252887 D 588858 CDS YP_005239217.1 378451857 3253466..3254173 1 NC_016856.1 CbiQ and related transporter; putative ABC-type cobalt transport system permease component 3254173 588858003813 STM14_3714 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type cobalt transport system permease component YP_005239217.1 3253466 D 588858 CDS YP_005239218.1 378451858 3254161..3254838 1 NC_016856.1 similar to Escherichia coli ATP-binding component of putrescine transport system (AAC73942.1); putative ABC-type cobalt transport system ATP-binding component 3254838 588858003814 STM14_3715 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type cobalt transport system ATP-binding component YP_005239218.1 3254161 D 588858 CDS YP_005239219.1 378451859 3254832..3255488 1 NC_016856.1 similar to Escherichia coli ATP-binding component of sulfate permease A protein; chromate resistance (AAC75475.1); putative ABC-type cobalt transport system ATP-binding component 3255488 588858003815 STM14_3716 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type cobalt transport system ATP-binding component YP_005239219.1 3254832 D 588858 CDS YP_005239220.1 378451860 complement(3255532..3257523) 1 NC_016856.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 3257523 tktA 588858003816 tktA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transketolase YP_005239220.1 3255532 R 588858 CDS YP_005239221.1 378451861 3257540..3257698 1 NC_016856.1 hypothetical protein 3257698 588858003817 STM14_3718 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239221.1 3257540 D 588858 CDS YP_005239222.1 378451862 3257799..3258557 1 NC_016856.1 contains putative chaperone function; putative Zn-dependent protease 3258557 yggG 588858003818 yggG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative Zn-dependent protease YP_005239222.1 3257799 D 588858 CDS YP_005239223.1 378451863 complement(3258658..3259578) 1 NC_016856.1 catalyzes the formation of putrescine from agmatine; agmatinase 3259578 speB 588858003819 speB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S agmatinase YP_005239223.1 3258658 R 588858 CDS YP_005239224.1 378451864 complement(3259783..3260598) 1 NC_016856.1 putative hydrolase/acyltransferase 3260598 588858003820 STM14_3721 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrolase/acyltransferase YP_005239224.1 3259783 R 588858 CDS YP_005239225.1 378451865 3260720..3260824 1 NC_016856.1 hypothetical protein 3260824 588858003821 STM14_3722 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239225.1 3260720 D 588858 CDS YP_005239226.1 378451866 complement(3260953..3261426) 1 NC_016856.1 putative mannitol dehydrogenase 3261426 588858003822 STM14_3723 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative mannitol dehydrogenase YP_005239226.1 3260953 R 588858 CDS YP_005239227.1 378451867 complement(3261465..3262472) 1 NC_016856.1 similar to Escherichia coli putative malate dehydrogenase (AAC73619.1); putative malate/L-lactate dehydrogenase 3262472 588858003823 STM14_3724 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative malate/L-lactate dehydrogenase YP_005239227.1 3261465 R 588858 CDS YP_005239228.1 378451868 complement(3262486..3263502) 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC77314.1); putative zinc-binding dehydrogenase 3263502 588858003824 STM14_3725 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative zinc-binding dehydrogenase YP_005239228.1 3262486 R 588858 CDS YP_005239229.1 378451869 complement(3263505..3264977) 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC75233.1); putative mannitol dehydrogenase 3264977 588858003825 STM14_3726 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative mannitol dehydrogenase YP_005239229.1 3263505 R 588858 CDS YP_005239230.1 378451870 complement(3266219..3266968) 1 NC_016856.1 similar to Escherichia coli regulator for uxu operon (AAC77280.1); GntR family; putative regulatory protein 3266968 588858003826 STM14_3727 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005239230.1 3266219 R 588858 CDS YP_005239231.1 378451871 complement(3267173..3267904) 1 NC_016856.1 putative outer membrane lipoprotein 3267904 588858003827 STM14_3728 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005239231.1 3267173 R 588858 CDS YP_005239232.1 378451872 complement(3268048..3270024) 1 NC_016856.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 3270024 speA 588858003828 speA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S arginine decarboxylase YP_005239232.1 3268048 R 588858 CDS YP_005239233.1 378451873 complement(3270033..3270164) 1 NC_016856.1 putative inner membrane protein 3270164 yqgB 588858003829 yqgB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239233.1 3270033 R 588858 CDS YP_005239234.1 378451874 complement(3270459..3270758) 1 NC_016856.1 putative inner membrane protein 3270758 yqgD 588858003831 yqgD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239234.1 3270459 R 588858 CDS YP_005239235.1 378451875 3270814..3271968 1 NC_016856.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3271968 metK 588858003832 metK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S S-adenosylmethionine synthetase YP_005239235.1 3270814 D 588858 CDS YP_005239236.1 378451876 complement(3271996..3272121) 1 NC_016856.1 hypothetical protein 3272121 588858003833 STM14_3734 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239236.1 3271996 R 588858 CDS YP_005239237.1 378451877 3272461..3273855 1 NC_016856.1 similar to Escherichia coli galactose-proton symport of transport system (AAC75980.1); MFS family; galactose/proton symporter 3273855 galP 588858003834 galP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S galactose/proton symporter YP_005239237.1 3272461 D 588858 CDS YP_005239238.1 378451878 3273934..3274431 1 NC_016856.1 hypothetical protein 3274431 sprT 588858003835 sprT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239238.1 3273934 D 588858 CDS YP_005239239.1 378451879 3274526..3275233 1 NC_016856.1 similar to Escherichia coli DNA-specific endonuclease I (AAC75982.1); DNA-specific endonuclease I 3275233 endA 588858003836 endA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-specific endonuclease I YP_005239239.1 3274526 D 588858 CDS YP_005239240.1 378451880 3275310..3276041 1 NC_016856.1 hypothetical protein 3276041 yggJ 588858003837 yggJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239240.1 3275310 D 588858 CDS YP_005239241.1 378451881 3276061..3277008 1 NC_016856.1 The second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3277008 gshB 588858003838 gshB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutathione synthetase YP_005239241.1 3276061 D 588858 CDS YP_005239242.1 378451882 3277224..3277787 1 NC_016856.1 hypothetical protein 3277787 yqgE 588858003839 yqgE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239242.1 3277224 D 588858 CDS YP_005239243.1 378451883 3277787..3278203 1 NC_016856.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3278203 yqgF 588858003840 yqgF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Holliday junction resolvase-like protein YP_005239243.1 3277787 D 588858 CDS YP_005239244.1 378451884 complement(3278250..3278936) 1 NC_016856.1 putative transcriptional regulator 3278936 588858003841 STM14_3742 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239244.1 3278250 R 588858 CDS YP_005239245.1 378451885 complement(3279068..3280048) 1 NC_016856.1 similar to Escherichia coli putative protein transport (AAC75987.1); may be involved in type II secretion; twitching motility protein 3280048 yggR 588858003842 yggR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S twitching motility protein YP_005239245.1 3279068 R 588858 CDS YP_005239246.1 378451886 3280066..3280770 1 NC_016856.1 putative enzyme with a TIM-barrel fold; hypothetical protein 3280770 yggS 588858003843 yggS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239246.1 3280066 D 588858 CDS YP_005239247.1 378451887 3280789..3281355 1 NC_016856.1 similar to Escherichia coli putative resistance protein (AAC75989.1); putative integral membrane protein 3281355 yggT 588858003844 yggT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative integral membrane protein YP_005239247.1 3280789 D 588858 CDS YP_005239248.1 378451888 3281352..3281642 1 NC_016856.1 hypothetical protein 3281642 yggU 588858003845 yggU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239248.1 3281352 D 588858 CDS YP_005239249.1 378451889 3281650..3282243 1 NC_016856.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 3282243 yggV 588858003846 yggV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative deoxyribonucleotide triphosphate pyrophosphatase YP_005239249.1 3281650 D 588858 CDS YP_005239250.1 378451890 3282236..3283372 1 NC_016856.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3283372 yggW 588858003847 yggW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S coproporphyrinogen III oxidase YP_005239250.1 3282236 D 588858 CDS YP_005239251.1 378451891 complement(3283463..3284470) 1 NC_016856.1 similar to Escherichia coli putative alpha helix chain (AAC75993.1); hypothetical protein 3284470 yggM 588858003848 yggM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239251.1 3283463 R 588858 CDS YP_005239252.1 378451892 complement(3284603..3285649) 1 NC_016856.1 catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; L-asparaginase II 3285649 ansB 588858003849 ansB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-asparaginase II YP_005239252.1 3284603 R 588858 CDS YP_005239253.1 378451893 complement(3285668..3285820) 1 NC_016856.1 hypothetical protein 3285820 588858003850 STM14_3751 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239253.1 3285668 R 588858 CDS YP_005239254.1 378451894 complement(3285838..3286557) 1 NC_016856.1 hypothetical protein 3286557 yggN 588858003851 yggN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239254.1 3285838 R 588858 CDS YP_005239255.1 378451895 complement(3286607..3286933) 1 NC_016856.1 hypothetical protein 3286933 yggL 588858003852 yggL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239255.1 3286607 R 588858 CDS YP_005239256.1 378451896 complement(3286933..3287652) 1 NC_016856.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7))-methyltransferase 3287652 trmB 588858003853 trmB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tRNA (guanine-N(7))-methyltransferase YP_005239256.1 3286933 R 588858 CDS YP_005239257.1 378451897 3287807..3288859 1 NC_016856.1 A/G-specific adenine glycosylase (SW:MUTY_SALTY); adenine DNA glycosylase 3288859 mutY 588858003854 mutY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S adenine DNA glycosylase YP_005239257.1 3287807 D 588858 CDS YP_005239258.1 378451898 3288887..3289162 1 NC_016856.1 hypothetical protein 3289162 yggX 588858003855 yggX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239258.1 3288887 D 588858 CDS YP_005239259.1 378451899 complement(3289138..3289263) 1 NC_016856.1 hypothetical protein 3289263 588858003856 STM14_3757 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239259.1 3289138 R 588858 CDS YP_005239260.1 378451900 3289275..3290360 1 NC_016856.1 Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase C 3290360 mltC 588858003857 mltC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S murein transglycosylase C YP_005239260.1 3289275 D 588858 CDS YP_005239261.1 378451901 complement(3290425..3290550) 1 NC_016856.1 hypothetical protein 3290550 588858003858 STM14_3759 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239261.1 3290425 R 588858 CDS YP_005239262.1 378451902 complement(3291026..3293161) 1 NC_016856.1 similar to Escherichia coli ornithine decarboxylase isozyme (AAC76002.1); ornithine decarboxylase 3293161 speC 588858003860 speC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ornithine decarboxylase YP_005239262.1 3291026 R 588858 CDS YP_005239263.1 378451903 complement(3293235..3293459) 1 NC_016856.1 hypothetical protein 3293459 588858003861 STM14_3762 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239263.1 3293235 R 588858 CDS YP_005239264.1 378451904 3293413..3293547 1 NC_016856.1 hypothetical protein 3293547 588858003862 STM14_3763 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239264.1 3293413 D 588858 CDS YP_005239265.1 378451905 3293586..3294293 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC76003.1); putative inner membrane protein 3294293 yqgA 588858003863 yqgA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239265.1 3293586 D 588858 CDS YP_005239266.1 378451906 complement(3294633..3295067) 1 NC_016856.1 putative lactoylglutathione lyase 3295067 588858003865 STM14_3766 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative lactoylglutathione lyase YP_005239266.1 3294633 R 588858 CDS YP_005239267.1 378451907 complement(3295078..3296403) 1 NC_016856.1 similar to Escherichia coli putative coenzyme A transferase (AAC75957.1); putative acetyl-CoA hydrolase 3296403 588858003866 STM14_3767 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative acetyl-CoA hydrolase YP_005239267.1 3295078 R 588858 CDS YP_005239268.1 378451908 complement(3296428..3296955) 1 NC_016856.1 similar to Escherichia coli putative aldehyde dehydrogenase (AAC74469.1); putative monoamine oxidase 3296955 588858003867 STM14_3768 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative monoamine oxidase YP_005239268.1 3296428 R 588858 CDS YP_005239269.1 378451909 complement(3296979..3297821) 1 NC_016856.1 similar to Escherichia coli citrate lyase beta chain; acyl lyase subunit (AAC73717.1); LysR family; putative transcriptional regulator 3297821 588858003868 STM14_3769 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239269.1 3296979 R 588858 CDS YP_005239270.1 378451910 3297913..3298791 1 NC_016856.1 putative transcriptional regulator (gi|5852589); LysR family; putative transcriptional regulator 3298791 588858003869 STM14_3770 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239270.1 3297913 D 588858 CDS YP_005239271.1 378451911 complement(3298839..3300578) 1 NC_016856.1 similar to Escherichia coli putative sulfatase (AAC74571.1); putative arylsulfatase 3300578 588858003870 STM14_3771 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative arylsulfatase YP_005239271.1 3298839 R 588858 CDS YP_005239272.1 378451912 complement(3300647..3301831) 1 NC_016856.1 similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1); putative arylsulfatase regulator 3301831 588858003871 STM14_3772 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative arylsulfatase regulator YP_005239272.1 3300647 R 588858 CDS YP_005239273.1 378451913 complement(3301831..3301965) 1 NC_016856.1 hypothetical protein 3301965 588858003872 STM14_3773 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239273.1 3301831 R 588858 CDS YP_005239274.1 378451914 3302110..3302214 1 NC_016856.1 hypothetical protein 3302214 588858003873 STM14_3774 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239274.1 3302110 D 588858 CDS YP_005239275.1 378451915 3302343..3303026 1 NC_016856.1 similar to Escherichia coli putative regulator (AAC76545.1); contains CheY-like receiver domain and HTH DNA-binding domain; putative response regulator 3303026 588858003874 STM14_3775 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative response regulator YP_005239275.1 3302343 D 588858 CDS YP_005239276.1 378451916 complement(3303130..3303687) 1 NC_016856.1 putative cytoplasmic protein 3303687 588858003875 STM14_3776 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239276.1 3303130 R 588858 CDS YP_005239277.1 378451917 complement(3303665..3305164) 1 NC_016856.1 similar to Escherichia coli proline permease transport protein (AAC73505.1); putative amino acid transporter 3305164 588858003876 STM14_3777 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative amino acid transporter YP_005239277.1 3303665 R 588858 CDS YP_005239278.1 378451918 complement(3305157..3305300) 1 NC_016856.1 hypothetical protein 3305300 588858003877 STM14_3778 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239278.1 3305157 R 588858 CDS YP_005239279.1 378451919 complement(3305240..3305395) 1 NC_016856.1 putative cytoplasmic protein 3305395 588858003878 STM14_3779 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239279.1 3305240 R 588858 CDS YP_005239280.1 378451920 complement(3305373..3305747) 1 NC_016856.1 putative cytoplasmic protein 3305747 588858003879 STM14_3780 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239280.1 3305373 R 588858 CDS YP_005239281.1 378451921 complement(3305762..3307063) 1 NC_016856.1 similar to Escherichia coli probable oxidoreductase (AAC74383.1); putative oxidoreductase 3307063 588858003880 STM14_3781 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative oxidoreductase YP_005239281.1 3305762 R 588858 CDS YP_005239282.1 378451922 3307225..3308709 1 NC_016856.1 similar to Escherichia coli phenylacetaldehyde dehydrogenase (AAC74467.1); putative NAD-dependent aldehyde dehydrogenase 3308709 588858003881 STM14_3782 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative NAD-dependent aldehyde dehydrogenase YP_005239282.1 3307225 D 588858 CDS YP_005239283.1 378451923 3308724..3308864 1 NC_016856.1 hypothetical protein 3308864 588858003882 STM14_3783 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239283.1 3308724 D 588858 CDS YP_005239284.1 378451924 complement(3308845..3309225) 1 NC_016856.1 putative cytoplasmic protein 3309225 588858003883 STM14_3784 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239284.1 3308845 R 588858 CDS YP_005239285.1 378451925 complement(3309225..3309710) 1 NC_016856.1 putative cytoplasmic protein 3309710 588858003884 STM14_3785 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239285.1 3309225 R 588858 CDS YP_005239286.1 378451926 3310018..3310173 1 NC_016856.1 hypothetical protein 3310173 588858003885 STM14_3786 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239286.1 3310018 D 588858 CDS YP_005239287.1 378451927 complement(3310436..3311359) 1 NC_016856.1 putative xylanase/chitin deacetylase 3311359 588858003886 STM14_3787 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative xylanase/chitin deacetylase YP_005239287.1 3310436 R 588858 CDS YP_005239288.1 378451928 3312290..3312427 1 NC_016856.1 hypothetical protein 3312427 588858003888 STM14_3789 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239288.1 3312290 D 588858 CDS YP_005239289.1 378451929 complement(3312496..3312606) 1 NC_016856.1 hypothetical protein 3312606 588858003889 STM14_3790 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239289.1 3312496 R 588858 CDS YP_005239290.1 378451930 complement(3312670..3313974) 1 NC_016856.1 similar to Escherichia coli transport of hexuronates (AAC76128.1); putative permease 3313974 588858003890 STM14_3791 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005239290.1 3312670 R 588858 CDS YP_005239291.1 378451931 3314050..3314181 1 NC_016856.1 hypothetical protein 3314181 588858003891 STM14_3792 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239291.1 3314050 D 588858 CDS YP_005239292.1 378451932 complement(3314188..3314334) 1 NC_016856.1 hypothetical protein 3314334 588858003892 STM14_3793 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239292.1 3314188 R 588858 CDS YP_005239293.1 378451933 3314216..3314410 1 NC_016856.1 hypothetical protein 3314410 588858003893 STM14_3794 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239293.1 3314216 D 588858 CDS YP_005239294.1 378451934 3314379..3315563 1 NC_016856.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 3315563 588858003894 STM14_3795 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S mannonate dehydratase YP_005239294.1 3314379 D 588858 CDS YP_005239295.1 378451935 3315674..3317146 1 NC_016856.1 similar to Escherichia coli D-mannonate oxidoreductase (AAC77279.1); putative D-mannonate oxidoreductase 3317146 588858003895 STM14_3796 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative D-mannonate oxidoreductase YP_005239295.1 3315674 D 588858 CDS YP_005239296.1 378451936 3317158..3318570 1 NC_016856.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 3318570 588858003896 STM14_3797 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucuronate isomerase YP_005239296.1 3317158 D 588858 CDS YP_005239297.1 378451937 3318584..3318703 1 NC_016856.1 hypothetical protein 3318703 588858003897 STM14_3798 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239297.1 3318584 D 588858 CDS YP_005239298.1 378451938 complement(3318870..3319928) 1 NC_016856.1 similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1); putative methyl-accepting chemotaxis protein 3319928 588858003898 STM14_3799 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative methyl-accepting chemotaxis protein YP_005239298.1 3318870 R 588858 CDS YP_005239299.1 378451939 complement(3319990..3320106) 1 NC_016856.1 hypothetical protein 3320106 588858003899 STM14_3800 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239299.1 3319990 R 588858 CDS YP_005239300.1 378451940 3320290..3320487 1 NC_016856.1 hypothetical protein 3320487 588858003900 STM14_3801 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239300.1 3320290 D 588858 CDS YP_005239301.1 378451941 complement(3320598..3322454) 1 NC_016856.1 catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase 3322454 gsp 588858003901 gsp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase YP_005239301.1 3320598 R 588858 CDS YP_005239302.1 378451942 complement(3322464..3322571) 1 NC_016856.1 hypothetical protein 3322571 588858003902 STM14_3803 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239302.1 3322464 R 588858 CDS YP_005239303.1 378451943 3322681..3323547 1 NC_016856.1 YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; putative glutathione S-transferase YghU 3323547 yghU 588858003903 yghU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glutathione S-transferase YghU YP_005239303.1 3322681 D 588858 CDS YP_005239304.1 378451944 complement(3323615..3324325) 1 NC_016856.1 hypothetical protein 3324325 588858003904 STM14_3805 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239304.1 3323615 R 588858 CDS YP_005239305.1 378451945 complement(3324325..3325377) 1 NC_016856.1 putative periplasmic ferrichrome-binding protein 3325377 588858003905 STM14_3806 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative periplasmic ferrichrome-binding protein YP_005239305.1 3324325 R 588858 CDS YP_005239306.1 378451946 complement(3325453..3325701) 1 NC_016856.1 similar to Escherichia coli hydrogenase-2 chaperone-like protein; may effect maturation of large subunit of hydrogenase-2 (AAC76026.1); hydrogenase 2 accessory protein HypG 3325701 hybG 588858003906 hybG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase 2 accessory protein HypG YP_005239306.1 3325453 R 588858 CDS YP_005239307.1 378451947 complement(3325729..3326070) 1 NC_016856.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein HybF 3326070 hypA_2 588858003907 hypA_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase nickel incorporation protein HybF YP_005239307.1 3325729 R 588858 CDS YP_005239308.1 378451948 complement(3326063..3326551) 1 NC_016856.1 similar to Escherichia coli member of hyb operon (AAC76028.1); hydrogenase 2-specific chaperone 3326551 hybE 588858003908 hybE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase 2-specific chaperone YP_005239308.1 3326063 R 588858 CDS YP_005239309.1 378451949 complement(3326544..3327038) 1 NC_016856.1 protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); hydrogenase 2 maturation endopeptidase 3327038 hybD 588858003909 hybD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase 2 maturation endopeptidase YP_005239309.1 3326544 R 588858 CDS YP_005239310.1 378451950 complement(3327038..3328741) 1 NC_016856.1 involved in hydrogen uptake; hydrogenase 2 large subunit 3328741 hybC 588858003910 hybC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase 2 large subunit YP_005239310.1 3327038 R 588858 CDS YP_005239311.1 378451951 complement(3328738..3329916) 1 NC_016856.1 HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits; putative hydrogenase 2 b cytochrome subunit 3329916 hybB 588858003911 hybB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrogenase 2 b cytochrome subunit YP_005239311.1 3328738 R 588858 CDS YP_005239312.1 378451952 complement(3329906..3330892) 1 NC_016856.1 Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 protein HybA 3330892 hybA 588858003912 hybA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase 2 protein HybA YP_005239312.1 3329906 R 588858 CDS YP_005239313.1 378451953 complement(3330895..3332013) 1 NC_016856.1 involved in hydrogen uptake; hydrogenase 2 small subunit 3332013 hypO 588858003913 hypO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydrogenase 2 small subunit YP_005239313.1 3330895 R 588858 CDS YP_005239314.1 378451954 3332051..3332179 1 NC_016856.1 hypothetical protein 3332179 588858003914 STM14_3815 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239314.1 3332051 D 588858 CDS YP_005239315.1 378451955 complement(3332203..3332490) 1 NC_016856.1 putative cytoplasmic protein 3332490 yghW 588858003915 yghW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239315.1 3332203 R 588858 CDS YP_005239316.1 378451956 complement(3332575..3334218) 1 NC_016856.1 similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1); putative methyl-accepting chemotaxis protein 3334218 588858003916 STM14_3817 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative methyl-accepting chemotaxis protein YP_005239316.1 3332575 R 588858 CDS YP_005239317.1 378451957 complement(3334525..3335019) 1 NC_016856.1 hypothetical protein 3335019 yqhA 588858003917 yqhA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239317.1 3334525 R 588858 CDS YP_005239318.1 378451958 3335174..3335281 1 NC_016856.1 hypothetical protein 3335281 588858003918 STM14_3819 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239318.1 3335174 D 588858 CDS YP_005239319.1 378451959 complement(3335299..3335814) 1 NC_016856.1 putative ATP-dependent RNA helicase-like protein 3335814 588858003919 STM14_3820 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ATP-dependent RNA helicase-like protein YP_005239319.1 3335299 R 588858 CDS YP_005239320.1 378451960 3335906..3336316 1 NC_016856.1 putative cytoplasmic protein 3336316 588858003920 STM14_3821 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239320.1 3335906 D 588858 CDS YP_005239321.1 378451961 3336303..3336707 1 NC_016856.1 putative cytoplasmic protein 3336707 588858003921 STM14_3822 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239321.1 3336303 D 588858 CDS YP_005239322.1 378451962 3336831..3337715 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC76039.1); oxidoreductase 3337715 yghA 588858003922 yghA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S oxidoreductase YP_005239322.1 3336831 D 588858 CDS YP_005239323.1 378451963 complement(3337828..3338253) 1 NC_016856.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD 3338253 exbD 588858003923 exbD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S biopolymer transport protein ExbD YP_005239323.1 3337828 R 588858 CDS YP_005239324.1 378451964 complement(3338260..3338994) 1 NC_016856.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbB 3338994 exbB 588858003924 exbB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S biopolymer transport protein ExbB YP_005239324.1 3338260 R 588858 CDS YP_005239325.1 378451965 complement(3338987..3339136) 1 NC_016856.1 putative inner membrane protein 3339136 588858003925 STM14_3826 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239325.1 3338987 R 588858 CDS YP_005239326.1 378451966 3339111..3340433 1 NC_016856.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 3340433 metC 588858003926 metC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cystathionine beta-lyase YP_005239326.1 3339111 D 588858 CDS YP_005239327.1 378451967 3340573..3341232 1 NC_016856.1 hypothetical protein in metC 3'region (SW:YGHB_SALTY); DedA family; hypothetical protein 3341232 yghB 588858003927 yghB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239327.1 3340573 D 588858 CDS YP_005239328.1 378451968 complement(3341296..3342213) 1 NC_016856.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC76046.1); AraC/XylS family; putative transcriptional regulator 3342213 yqhC 588858003928 yqhC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239328.1 3341296 R 588858 CDS YP_005239329.1 378451969 3342234..3342434 1 NC_016856.1 hypothetical protein 3342434 588858003929 STM14_3830 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239329.1 3342234 D 588858 CDS YP_005239330.1 378451970 3342388..3343551 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC76047.1); putative alcohol dehydrogenase 3343551 yqhD 588858003930 yqhD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative alcohol dehydrogenase YP_005239330.1 3342388 D 588858 CDS YP_005239331.1 378451971 3343657..3344484 1 NC_016856.1 methylglyoxal reductase/?-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; 2,5-diketo-D-gluconate reductase A 3344484 dkgA 588858003931 dkgA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2,5-diketo-D-gluconate reductase A YP_005239331.1 3343657 D 588858 CDS YP_005239332.1 378451972 complement(3344492..3344629) 1 NC_016856.1 hypothetical protein 3344629 588858003932 STM14_3833 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239332.1 3344492 R 588858 CDS YP_005239333.1 378451973 3344530..3344640 1 NC_016856.1 hypothetical protein 3344640 588858003933 STM14_3834 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239333.1 3344530 D 588858 CDS YP_005239334.1 378451974 3344681..3346135 1 NC_016856.1 similar to Escherichia coli putative membrane pump protein (AAC73857.1); putative cation transporter 3346135 588858003934 STM14_3835 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cation transporter YP_005239334.1 3344681 D 588858 CDS YP_005239335.1 378451975 3346180..3346635 1 NC_016856.1 Ap4A; putative diadenosine tetraphosphatehydrolase 3346635 588858003935 STM14_3836 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative diadenosine tetraphosphatehydrolase YP_005239335.1 3346180 D 588858 CDS YP_005239336.1 378451976 3346625..3346789 1 NC_016856.1 hypothetical protein 3346789 588858003936 STM14_3837 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239336.1 3346625 D 588858 CDS YP_005239337.1 378451977 complement(3346793..3346924) 1 NC_016856.1 hypothetical protein 3346924 588858003937 STM14_3838 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239337.1 3346793 R 588858 CDS YP_005239338.1 378451978 complement(3347190..3349361) 1 NC_016856.1 putative FeS oxidoreductase family 2; hypothetical protein 3349361 ygiR 588858003938 ygiR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239338.1 3347190 R 588858 CDS YP_005239339.1 378451979 complement(3349441..3349545) 1 NC_016856.1 hypothetical protein 3349545 588858003939 STM14_3840 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239339.1 3349441 R 588858 CDS YP_005239340.1 378451980 3349849..3350832 1 NC_016856.1 similar to Escherichia coli putative solute-binding transport protein (AAC76603.1); putative periplasmic dicarboxylate-binding protein 3350832 588858003940 STM14_3841 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative periplasmic dicarboxylate-binding protein YP_005239340.1 3349849 D 588858 CDS YP_005239341.1 378451981 3350874..3351356 1 NC_016856.1 putative inner membrane protein 3351356 588858003941 STM14_3842 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239341.1 3350874 D 588858 CDS YP_005239342.1 378451982 3351367..3352674 1 NC_016856.1 hypothetical 46.1 kDa protein in plsC 3'region (SW:YGIK_SALTY); integral membrane protein; putative transporter 3352674 ygiK 588858003942 ygiK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transporter YP_005239342.1 3351367 D 588858 CDS YP_005239343.1 378451983 complement(3352719..3354131) 1 NC_016856.1 SufI protein precursor (SW:SUFI_SALTY); putative periplasmic protein; repressor protein for FtsI 3354131 sufI 588858003943 sufI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S repressor protein for FtsI YP_005239343.1 3352719 R 588858 CDS YP_005239344.1 378451984 complement(3354205..3354942) 1 NC_016856.1 1-acyl-SN-glycerol-3-phosphate acyltransferase (SW:PLSC_SALTY); 1-acyl-sn-glycerol-3-phosphate acyltransferase 3354942 plsC 588858003944 plsC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_005239344.1 3354205 R 588858 CDS YP_005239345.1 378451985 complement(3355199..3357457) 1 NC_016856.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 3357457 parC 588858003945 parC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA topoisomerase IV subunit A YP_005239345.1 3355199 R 588858 CDS YP_005239346.1 378451986 complement(3357568..3358434) 1 NC_016856.1 AraC family; helix-turn-helix; putative regulatory protein 3358434 588858003946 STM14_3847 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005239346.1 3357568 R 588858 CDS YP_005239347.1 378451987 complement(3358506..3358898) 1 NC_016856.1 putative outer membrane protein 3358898 ygiW 588858003947 ygiW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005239347.1 3358506 R 588858 CDS YP_005239348.2 410023215 3359050..3359709 1 NC_016856.1 response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; DNA-binding transcriptional regulator QseB 3359709 ygiX 588858003948 ygiX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator QseB YP_005239348.2 3359050 D 588858 CDS YP_005239349.1 378451989 3359706..3361055 1 NC_016856.1 similar to Escherichia coli putative 2-component sensor protein (AAC76062.1); regulatory protein; sensor protein QseC 3361055 ygiY 588858003949 ygiY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sensor protein QseC YP_005239349.1 3359706 D 588858 CDS YP_005239350.1 378451990 3361049..3361165 1 NC_016856.1 hypothetical protein 3361165 588858003950 STM14_3851 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239350.1 3361049 D 588858 CDS YP_005239351.1 378451991 3361162..3361743 1 NC_016856.1 similar to Escherichia coli modulator of drug activity B (AAC76064.1); drug modulator; NADPH-specific quinone oxidoreductase 3361743 mdaB 588858003951 mdaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NADPH-specific quinone oxidoreductase YP_005239351.1 3361162 D 588858 CDS YP_005239352.1 378451992 3361775..3362089 1 NC_016856.1 putative cytoplasmic protein 3362089 ygiN 588858003952 ygiN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239352.1 3361775 D 588858 CDS YP_005239353.1 378451993 complement(3362214..3364106) 1 NC_016856.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 3364106 parE 588858003953 parE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA topoisomerase IV subunit B YP_005239353.1 3362214 R 588858 CDS YP_005239354.1 378451994 complement(3364134..3364715) 1 NC_016856.1 Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YqiA 3364715 yqiA 588858003954 yqiA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S esterase YqiA YP_005239354.1 3364134 R 588858 CDS YP_005239355.1 378451995 complement(3364715..3365542) 1 NC_016856.1 similar to Escherichia coli regulator of lacZ (AAC76068.1); cyclic 3',5'-adenosine monophosphate phosphodiesterase 3365542 icc 588858003955 icc Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cyclic 3',5'-adenosine monophosphate phosphodiesterase YP_005239355.1 3364715 R 588858 CDS YP_005239356.1 378451996 complement(3365567..3365989) 1 NC_016856.1 similar to Escherichia coli putative enzyme (AAC76069.1); hypothetical protein 3365989 yqiB 588858003956 yqiB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239356.1 3365567 R 588858 CDS YP_005239357.1 378451997 complement(3365986..3366618) 1 NC_016856.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose pyrophosphatase NudF 3366618 nudF 588858003957 nudF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ADP-ribose pyrophosphatase NudF YP_005239357.1 3365986 R 588858 CDS YP_005239358.1 378451998 3366825..3368294 1 NC_016856.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3368294 tolC 588858003958 tolC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane channel protein YP_005239358.1 3366825 D 588858 CDS YP_005239359.1 378451999 3368291..3368398 1 NC_016856.1 hypothetical protein 3368398 588858003959 STM14_3860 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239359.1 3368291 D 588858 CDS YP_005239360.1 378452000 3368507..3369178 1 NC_016856.1 hypothetical protein 3369178 ygiB 588858003960 ygiB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239360.1 3368507 D 588858 CDS YP_005239361.1 378452001 3369184..3370347 1 NC_016856.1 similar to Escherichia coli putative synthetase/amidase (AAC76074.1); putative glutathionylspermidine synthase 3370347 ygiC 588858003961 ygiC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glutathionylspermidine synthase YP_005239361.1 3369184 D 588858 CDS YP_005239362.1 378452002 complement(3370409..3371239) 1 NC_016856.1 seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; hypothetical protein 3371239 ygiD 588858003962 ygiD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239362.1 3370409 R 588858 CDS YP_005239363.1 378452003 3371338..3372111 1 NC_016856.1 zinc transporter ZupT 3372111 ygiE 588858003963 ygiE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S zinc transporter ZupT YP_005239363.1 3371338 D 588858 CDS YP_005239364.1 378452004 complement(3372178..3372354) 1 NC_016856.1 hypothetical protein 3372354 588858003964 STM14_3865 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239364.1 3372178 R 588858 CDS YP_005239365.1 378452005 3372754..3374550 1 NC_016856.1 putative arylsulfate sulfotransferase 3374550 588858003965 STM14_3866 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative arylsulfate sulfotransferase YP_005239365.1 3372754 D 588858 CDS YP_005239366.1 378452006 3374570..3375241 1 NC_016856.1 thiol-disulfide isomerase and thioredoxin; putative disulfide bond formation protein 3375241 588858003966 STM14_3867 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative disulfide bond formation protein YP_005239366.1 3374570 D 588858 CDS YP_005239367.1 378452007 3375256..3375933 1 NC_016856.1 putative disulfide oxidoreductase 3375933 588858003967 STM14_3868 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative disulfide oxidoreductase YP_005239367.1 3375256 D 588858 CDS YP_005239368.1 378452008 complement(3376104..3376757) 1 NC_016856.1 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3376757 ribB 588858003968 ribB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_005239368.1 3376104 R 588858 CDS YP_005239369.1 378452009 3377080..3377493 1 NC_016856.1 putative cytoplasmic protein 3377493 yqiC 588858003969 yqiC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239369.1 3377080 D 588858 CDS YP_005239370.1 378452010 complement(3377567..3377776) 1 NC_016856.1 Involved in glycogen synthesis. May be involved in glycogen priming; glycogen synthesis protein GlgS 3377776 glgS 588858003970 glgS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycogen synthesis protein GlgS YP_005239370.1 3377567 R 588858 CDS YP_005239371.1 378452011 complement(3377873..3378022) 1 NC_016856.1 hypothetical protein 3378022 588858003971 STM14_3872 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239371.1 3377873 R 588858 CDS YP_005239372.1 378452012 3378034..3378654 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC76086.1); putative inner membrane protein 3378654 588858003972 STM14_3873 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239372.1 3378034 D 588858 CDS YP_005239373.1 378452013 3378673..3380352 1 NC_016856.1 similar to Escherichia coli putative membrane protein (AAC76087.1); hypothetical protein 3380352 yqiK 588858003973 yqiK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239373.1 3378673 D 588858 CDS YP_005239374.1 378452014 3380454..3380651 1 NC_016856.1 hypothetical protein 3380651 588858003974 STM14_3875 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239374.1 3380454 D 588858 CDS YP_005239375.1 378452015 complement(3380812..3382245) 1 NC_016856.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 3382245 rfaE 588858003975 rfaE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_005239375.1 3380812 R 588858 CDS YP_005239376.1 378452016 complement(3382293..3385136) 1 NC_016856.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 3385136 glnE 588858003976 glnE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_005239376.1 3382293 R 588858 CDS YP_005239377.1 378452017 complement(3385254..3386555) 1 NC_016856.1 putative cytoplasmic protein 3386555 ygiF 588858003977 ygiF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239377.1 3385254 R 588858 CDS YP_005239378.1 378452018 3386797..3387411 1 NC_016856.1 contains putative SH3 domain protein; putative signal transduction protein 3387411 ygiM 588858003978 ygiM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative signal transduction protein YP_005239378.1 3386797 D 588858 CDS YP_005239379.1 378452019 3387474..3388715 1 NC_016856.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3388715 cca 588858003979 cca Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase YP_005239379.1 3387474 D 588858 CDS YP_005239380.1 378452020 complement(3388820..3389644) 1 NC_016856.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 3389644 uppP 588858003980 uppP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S undecaprenyl pyrophosphate phosphatase YP_005239380.1 3388820 R 588858 CDS YP_005239381.1 378452021 complement(3389739..3390101) 1 NC_016856.1 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase 3390101 folB 588858003981 folB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase YP_005239381.1 3389739 R 588858 CDS YP_005239382.1 378452022 3390205..3390816 1 NC_016856.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 3390816 ygiH 588858003982 ygiH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycerol-3-phosphate acyltransferase PlsY YP_005239382.1 3390205 D 588858 CDS YP_005239383.1 378452023 3390891..3391163 1 NC_016856.1 hypothetical protein 3391163 588858003983 STM14_3884 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239383.1 3390891 D 588858 CDS YP_005239384.1 378452024 complement(3391067..3392080) 1 NC_016856.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotese from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; O-sialoglycoprotein endopeptidase 3392080 gcp 588858003984 gcp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S O-sialoglycoprotein endopeptidase YP_005239384.1 3391067 R 588858 CDS YP_005239385.1 378452025 3392308..3392523 1 NC_016856.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3392523 rpsU 588858003985 rpsU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S21 YP_005239385.1 3392308 D 588858 CDS YP_005239386.1 378452026 3392759..3394504 1 NC_016856.1 synthesizes RNA primers at the replication forks; DNA primase 3394504 dnaG 588858003986 dnaG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA primase YP_005239386.1 3392759 D 588858 CDS YP_005239387.1 378452027 3394519..3396501 1 NC_016856.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 3396501 rpoD 588858003987 rpoD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S RNA polymerase sigma factor RpoD YP_005239387.1 3394519 D 588858 CDS YP_005239388.1 378452028 complement(3396625..3397131) 1 NC_016856.1 G/U mismatch-specific DNA glycosylase 3397131 mug 588858003988 mug Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S G/U mismatch-specific DNA glycosylase YP_005239388.1 3396625 R 588858 CDS YP_005239389.1 378452029 complement(3397412..3398179) 1 NC_016856.1 putative transporter 3398179 yqjH 588858003990 yqjH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transporter YP_005239389.1 3397412 R 588858 CDS YP_005239390.1 378452030 3398411..3399058 1 NC_016856.1 putative transcriptional regulator 3399058 yqjI 588858003991 yqjI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239390.1 3398411 D 588858 CDS YP_005239391.1 378452031 complement(3399055..3400620) 1 NC_016856.1 similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1); putative methyl-accepting chemotaxis protein 3400620 588858003992 STM14_3893 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative methyl-accepting chemotaxis protein YP_005239391.1 3399055 R 588858 CDS YP_005239392.1 378452032 complement(3401008..3402528) 1 NC_016856.1 similar to Escherichia coli aerotaxis sensor receptor; flavoprotein (AAC76107.1); senses cellular redox state or proton motive force; aerotaxis sensor receptor 3402528 aer 588858003993 aer Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aerotaxis sensor receptor YP_005239392.1 3401008 R 588858 CDS YP_005239393.1 378452033 3402540..3402695 1 NC_016856.1 hypothetical protein 3402695 588858003994 STM14_3895 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239393.1 3402540 D 588858 CDS YP_005239394.1 378452034 3402931..3404337 1 NC_016856.1 catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; putrescine--2-oxoglutarate aminotransferase 3404337 oat 588858003995 oat Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putrescine--2-oxoglutarate aminotransferase YP_005239394.1 3402931 D 588858 CDS YP_005239395.1 378452035 3404350..3404460 1 NC_016856.1 hypothetical protein 3404460 588858003996 STM14_3897 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239395.1 3404350 D 588858 CDS YP_005239396.1 378452036 3404508..3406526 1 NC_016856.1 similar to Escherichia coli putative NADPH dehydrogenase (AAC76116.1); 2,4-dienoyl-CoA reductase 3406526 fadH 588858003997 fadH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2,4-dienoyl-CoA reductase YP_005239396.1 3404508 D 588858 CDS YP_005239397.1 378452037 complement(3406607..3407743) 1 NC_016856.1 similar to Escherichia coli putative enzyme (AAC76119.1); putative methyltransferase 3407743 ygjO 588858003998 ygjO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative methyltransferase YP_005239397.1 3406607 R 588858 CDS YP_005239398.1 378452038 3407829..3408326 1 NC_016856.1 putative metal-dependent hydrolase 3408326 ygjP 588858003999 ygjP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative metal-dependent hydrolase YP_005239398.1 3407829 D 588858 CDS YP_005239399.1 378452039 complement(3408358..3408459) 1 NC_016856.1 hypothetical protein 3408459 588858004000 STM14_3901 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239399.1 3408358 R 588858 CDS YP_005239400.1 378452040 3408478..3409170 1 NC_016856.1 putative integral membrane protein 3409170 ygjQ 588858004001 ygjQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative integral membrane protein YP_005239400.1 3408478 D 588858 CDS YP_005239401.1 378452041 3409259..3410257 1 NC_016856.1 putative dehydrogenase 3410257 ygjR 588858004002 ygjR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dehydrogenase YP_005239401.1 3409259 D 588858 CDS YP_005239402.1 378452042 3410298..3410435 1 NC_016856.1 hypothetical protein 3410435 588858004003 STM14_3904 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239402.1 3410298 D 588858 CDS YP_005239403.1 378452043 3410530..3411498 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC76123.1); putative tellurite resistance protein 3411498 ygjT 588858004004 ygjT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative tellurite resistance protein YP_005239403.1 3410530 D 588858 CDS YP_005239404.1 378452044 3411753..3412997 1 NC_016856.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3412997 ygjU 588858004005 ygjU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S serine/threonine transporter SstT YP_005239404.1 3411753 D 588858 CDS YP_005239405.1 378452045 complement(3412994..3413194) 1 NC_016856.1 hypothetical protein 3413194 588858004006 STM14_3907 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239405.1 3412994 R 588858 CDS YP_005239406.1 378452046 3413447..3414109 1 NC_016856.1 DedA family; hypothetical protein 3414109 yqjA 588858004007 yqjA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239406.1 3413447 D 588858 CDS YP_005239407.1 378452047 3414113..3414496 1 NC_016856.1 hypothetical protein 3414496 yqjB 588858004008 yqjB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239407.1 3414113 D 588858 CDS YP_005239408.1 378452048 3414641..3415009 1 NC_016856.1 hypothetical protein 3415009 yqjC 588858004009 yqjC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239408.1 3414641 D 588858 CDS YP_005239409.1 378452049 3415051..3415356 1 NC_016856.1 putative inner membrane protein 3415356 yqjD 588858004010 yqjD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239409.1 3415051 D 588858 CDS YP_005239410.1 378452050 3415359..3415757 1 NC_016856.1 putative inner membrane protein 3415757 yqjE 588858004011 yqjE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239410.1 3415359 D 588858 CDS YP_005239411.1 378452051 3415754..3416053 1 NC_016856.1 putative inner membrane protein 3416053 yqjK 588858004012 yqjK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239411.1 3415754 D 588858 CDS YP_005239412.1 378452052 3416198..3416683 1 NC_016856.1 hypothetical protein 3416683 yqjF 588858004013 yqjF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239412.1 3416198 D 588858 CDS YP_005239413.1 378452053 3416751..3417737 1 NC_016856.1 similar to Escherichia coli putative transferase (AAC76137.1); putative glutathione S-transferase 3417737 yqjG 588858004014 yqjG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glutathione S-transferase YP_005239413.1 3416751 D 588858 CDS YP_005239414.1 378452054 3417861..3418226 1 NC_016856.1 similar to Escherichia coli putative cytochrome (AAC76138.1); putative inner membrane protein 3418226 yhaH 588858004015 yhaH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239414.1 3417861 D 588858 CDS YP_005239415.1 378452055 complement(3418265..3419161) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76140.1); LysR family; putative transcriptional regulator 3419161 yhaJ 588858004016 yhaJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239415.1 3418265 R 588858 CDS YP_005239416.1 378452056 3419266..3419967 1 NC_016856.1 putative cytoplasmic protein 3419967 yhaK 588858004017 yhaK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239416.1 3419266 D 588858 CDS YP_005239417.1 378452057 3419991..3420155 1 NC_016856.1 putative cytoplasmic protein 3420155 yhaL 588858004018 yhaL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239417.1 3419991 D 588858 CDS YP_005239418.1 378452058 complement(3420268..3421578) 1 NC_016856.1 putative inner membrane protein 3421578 yhaN 588858004019 yhaN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239418.1 3420268 R 588858 CDS YP_005239419.1 378452059 complement(3421604..3423043) 1 NC_016856.1 similar to Escherichia coli putative transport system permease protein (AAC76145.1); HAAAP family; putative transport protein 3423043 yhaO 588858004020 yhaO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005239419.1 3421604 R 588858 CDS YP_005239420.1 378452060 complement(3423251..3424615) 1 NC_016856.1 similar to Escherichia coli L-serine dehydratase; deaminase L-SD2 (AAC75839.1); L-serine deaminase 3424615 tdcG 588858004021 tdcG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-serine deaminase YP_005239420.1 3423251 R 588858 CDS YP_005239421.1 378452061 complement(3424685..3426979) 1 NC_016856.1 similar to Escherichia coli probable formate acetyltransferase 3 (AAC76149.1); pyruvate formate-lyase 4/2-ketobutyrate formate-lyase 3426979 tdcE 588858004022 tdcE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyruvate formate-lyase 4/2-ketobutyrate formate-lyase YP_005239421.1 3424685 R 588858 CDS YP_005239422.1 378452062 complement(3427013..3428221) 1 NC_016856.1 catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; propionate/acetate kinase 3428221 tdcD 588858004023 tdcD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S propionate/acetate kinase YP_005239422.1 3427013 R 588858 CDS YP_005239423.1 378452063 complement(3428287..3429618) 1 NC_016856.1 involved in the import of threonine and serine in combination with the import of a proton; threonine/serine transporter TdcC 3429618 tdcC 588858004024 tdcC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S threonine/serine transporter TdcC YP_005239423.1 3428287 R 588858 CDS YP_005239424.1 378452064 complement(3429639..3430628) 1 NC_016856.1 catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase 3430628 tdcB 588858004025 tdcB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S threonine dehydratase YP_005239424.1 3429639 R 588858 CDS YP_005239425.1 378452065 complement(3430726..3431664) 1 NC_016856.1 regulates the tdcABCDEFG operon which is involved in amino acid degradation; DNA-binding transcriptional activator TdcA 3431664 tdcA 588858004026 tdcA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional activator TdcA YP_005239425.1 3430726 R 588858 CDS YP_005239426.1 378452066 complement(3433463..3434608) 1 NC_016856.1 glycerate kinase 3434608 garK 588858004028 garK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycerate kinase YP_005239426.1 3433463 R 588858 CDS YP_005239427.1 378452067 complement(3434706..3435596) 1 NC_016856.1 catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase 3435596 garR 588858004029 garR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tartronate semialdehyde reductase YP_005239427.1 3434706 R 588858 CDS YP_005239428.1 378452068 complement(3435622..3436392) 1 NC_016856.1 alpha-dehydro-beta-deoxy-D-glucarate aldolase 3436392 garL 588858004030 garL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S alpha-dehydro-beta-deoxy-D-glucarate aldolase YP_005239428.1 3435622 R 588858 CDS YP_005239429.1 378452069 complement(3436508..3436648) 1 NC_016856.1 hypothetical protein 3436648 588858004031 STM14_3932 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239429.1 3436508 R 588858 CDS YP_005239430.1 378452070 3436575..3436694 1 NC_016856.1 hypothetical protein 3436694 588858004032 STM14_3933 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239430.1 3436575 D 588858 CDS YP_005239431.1 378452071 3436648..3436776 1 NC_016856.1 hypothetical protein 3436776 588858004033 STM14_3934 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239431.1 3436648 D 588858 CDS YP_005239432.1 378452072 3436922..3438493 1 NC_016856.1 similar to Escherichia coli putative hydrolase (AAC76162.1); galactarate dehydratase 3438493 garD 588858004034 garD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S galactarate dehydratase YP_005239432.1 3436922 D 588858 CDS YP_005239433.1 378452073 complement(3438733..3439680) 1 NC_016856.1 similar to Escherichia coli ribokinase (AAC76775.1); ribokinase family; putative sugar kinase 3439680 588858004035 STM14_3936 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sugar kinase YP_005239433.1 3438733 R 588858 CDS YP_005239434.1 378452074 complement(3439691..3440524) 1 NC_016856.1 similar to Escherichia coli putative DeoR-type transcriptional regulator of Aga operon (AAC76165.1); DeoR family; AGA operon transcriptional repressor 3440524 agaR 588858004036 agaR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S AGA operon transcriptional repressor YP_005239434.1 3439691 R 588858 CDS YP_005239435.1 378452075 3440518..3440661 1 NC_016856.1 hypothetical protein 3440661 588858004037 STM14_3938 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239435.1 3440518 D 588858 CDS YP_005239436.1 378452076 3440858..3441712 1 NC_016856.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase 3441712 gatY_1 588858004038 gatY_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tagatose-bisphosphate aldolase YP_005239436.1 3440858 D 588858 CDS YP_005239437.1 378452077 3441723..3442637 1 NC_016856.1 similar to Escherichia coli 6-phosphofructokinase II; suppressor of pfkA (AAC74793.1); putative fructose-1-phosphate kinase 3442637 588858004039 STM14_3940 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fructose-1-phosphate kinase YP_005239437.1 3441723 D 588858 CDS YP_005239438.1 378452078 3443499..3444542 1 NC_016856.1 Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; galactitol-1-phosphate dehydrogenase 3444542 588858004042 STM14_3943 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S galactitol-1-phosphate dehydrogenase YP_005239438.1 3443499 D 588858 CDS YP_005239439.1 378452079 3444653..3445426 1 NC_016856.1 similar to Escherichia coli split galactitol utilization operon repressor (AAC75148.1); galactitol utilization operon transcriptional repressor 3445426 588858004043 STM14_3944 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S galactitol utilization operon transcriptional repressor YP_005239439.1 3444653 D 588858 CDS YP_005239440.1 378452080 complement(3445584..3446447) 1 NC_016856.1 putative methyltransferase 3446447 yraL 588858004044 yraL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative methyltransferase YP_005239440.1 3445584 R 588858 CDS YP_005239441.1 378452081 3446511..3448553 1 NC_016856.1 similar to Escherichia coli putative glycosylase (AAC76181.1); putative transglycosylase 3448553 yraM 588858004045 yraM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transglycosylase YP_005239441.1 3446511 D 588858 CDS YP_005239442.1 378452082 3448511..3448906 1 NC_016856.1 hypothetical protein 3448906 yraN 588858004046 yraN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239442.1 3448511 D 588858 CDS YP_005239443.1 378452083 3448928..3449518 1 NC_016856.1 Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; DnaA initiator-associating protein DiaA 3449518 yraO 588858004047 yraO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DnaA initiator-associating protein DiaA YP_005239443.1 3448928 D 588858 CDS YP_005239444.1 378452084 3449528..3450103 1 NC_016856.1 similar to Escherichia coli putative periplasmic protein (AAC76184.1); hypothetical protein 3450103 yraP 588858004048 yraP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239444.1 3449528 D 588858 CDS YP_005239445.1 378452085 complement(3450170..3450838) 1 NC_016856.1 putative nucleoside-diphosphate-sugar epimerase 3450838 yraR 588858004049 yraR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative nucleoside-diphosphate-sugar epimerase YP_005239445.1 3450170 R 588858 CDS YP_005239446.1 378452086 3450936..3451454 1 NC_016856.1 putative intracellular proteinase 3451454 yhbO 588858004050 yhbO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative intracellular proteinase YP_005239446.1 3450936 D 588858 CDS YP_005239447.1 378452087 complement(3451434..3451877) 1 NC_016856.1 hypothetical protein 3451877 yhbP 588858004051 yhbP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239447.1 3451434 R 588858 CDS YP_005239448.1 378452088 3451915..3452232 1 NC_016856.1 GIY-YIG nuclease superfamily protein 3452232 yhbQ 588858004052 yhbQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S GIY-YIG nuclease superfamily protein YP_005239448.1 3451915 D 588858 CDS YP_005239449.1 378452089 complement(3452219..3452722) 1 NC_016856.1 putative ABC superfamily membrane protein; putative transport protein 3452722 yhbS 588858004053 yhbS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005239449.1 3452219 R 588858 CDS YP_005239450.1 378452090 complement(3452716..3453240) 1 NC_016856.1 putative lipid carrier protein 3453240 yhbT 588858004054 yhbT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative lipid carrier protein YP_005239450.1 3452716 R 588858 CDS YP_005239451.1 378452091 3453457..3454452 1 NC_016856.1 similar to Escherichia coli putative collagenase (AAC76192.1); putative protease 3454452 yhbU 588858004055 yhbU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative protease YP_005239451.1 3453457 D 588858 CDS YP_005239452.1 378452092 3454461..3455339 1 NC_016856.1 putative protease 3455339 yhbV 588858004056 yhbV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative protease YP_005239452.1 3454461 D 588858 CDS YP_005239453.1 378452093 3455517..3456524 1 NC_016856.1 similar to Escherichia coli putative enzyme (AAC76194.1); hypothetical protein 3456524 yhbW 588858004057 yhbW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239453.1 3455517 D 588858 CDS YP_005239454.1 378452094 complement(3456502..3457221) 1 NC_016856.1 putative inner membrane protein 3457221 588858004058 STM14_3959 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239454.1 3456502 R 588858 CDS YP_005239455.1 378452095 3457380..3457910 1 NC_016856.1 putative cytoplasmic protein 3457910 588858004059 STM14_3960 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239455.1 3457380 D 588858 CDS YP_005239456.1 378452096 complement(3457971..3459215) 1 NC_016856.1 tryptophan transporter of high affinity; tryptophan permease 3459215 mtr 588858004060 mtr Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tryptophan permease YP_005239456.1 3457971 R 588858 CDS YP_005239457.1 378452097 complement(3459369..3461258) 1 NC_016856.1 participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; ATP-dependent RNA helicase DeaD 3461258 deaD 588858004061 deaD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-dependent RNA helicase DeaD YP_005239457.1 3459369 R 588858 CDS YP_005239458.1 378452098 complement(3461437..3462321) 1 NC_016856.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 3462321 nlpI 588858004062 nlpI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipoprotein NlpI YP_005239458.1 3461437 R 588858 CDS YP_005239459.1 378452099 complement(3462431..3464566) 1 NC_016856.1 similar to Escherichia coli polynucleotide phosphorylase; cytidylate kinase activity (AAC76198.1); member of mRNA degradosome; polynucleotide phosphorylase/polyadenylase 3464566 pnp 588858004063 pnp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S polynucleotide phosphorylase/polyadenylase YP_005239459.1 3462431 R 588858 CDS YP_005239460.1 378452100 complement(3464611..3464718) 1 NC_016856.1 hypothetical protein 3464718 588858004064 STM14_3965 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239460.1 3464611 R 588858 CDS YP_005239461.1 378452101 complement(3464808..3465077) 1 NC_016856.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 3465077 rpsO 588858004065 rpsO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S15 YP_005239461.1 3464808 R 588858 CDS YP_005239462.1 378452102 complement(3465228..3466172) 1 NC_016856.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 3466172 truB 588858004066 truB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tRNA pseudouridine synthase B YP_005239462.1 3465228 R 588858 CDS YP_005239463.1 378452103 complement(3466172..3466573) 1 NC_016856.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 3466573 rbfA 588858004067 rbfA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribosome-binding factor A YP_005239463.1 3466172 R 588858 CDS YP_005239464.1 378452104 complement(3466794..3469472) 1 NC_016856.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 3469472 infB 588858004068 infB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S translation initiation factor IF-2 YP_005239464.1 3466794 R 588858 CDS YP_005239465.1 378452105 complement(3469497..3470999) 1 NC_016856.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 3470999 nusA 588858004069 nusA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcription elongation factor NusA YP_005239465.1 3469497 R 588858 CDS YP_005239466.1 378452106 complement(3471027..3471479) 1 NC_016856.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 3471479 yhbC 588858004070 yhbC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239466.1 3471027 R 588858 CDS YP_005239467.1 378452107 3472107..3473450 1 NC_016856.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 3473450 argG 588858004072 argG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S argininosuccinate synthase YP_005239467.1 3472107 D 588858 CDS YP_005239468.1 378452108 complement(3473536..3474600) 1 NC_016856.1 putative cytoplasmic protein 3474600 588858004073 STM14_3974 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239468.1 3473536 R 588858 CDS YP_005239469.2 410023216 complement(3475036..3475368) 1 NC_016856.1 similar to Escherichia coli protein export; membrane protein (AAC76207.1); IISP family; auxillary membrane component; preprotein translocase subunit SecG 3475368 secG 588858004075 secG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S preprotein translocase subunit SecG YP_005239469.2 3475036 R 588858 CDS YP_005239470.1 378452110 complement(3475591..3476928) 1 NC_016856.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 3476928 glmM 588858004076 glmM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoglucosamine mutase YP_005239470.1 3475591 R 588858 CDS YP_005239471.1 378452111 complement(3476921..3477769) 1 NC_016856.1 catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate; dihydropteroate synthase 3477769 folP 588858004077 folP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dihydropteroate synthase YP_005239471.1 3476921 R 588858 CDS YP_005239472.1 378452112 complement(3477916..3478374) 1 NC_016856.1 transposase for insertion sequence element IS200 (SW:T200_SALTY); transposase 3478374 tnpA_9 588858004078 tnpA_9 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transposase YP_005239472.1 3477916 R 588858 CDS YP_005239473.1 378452113 complement(3478331..3478519) 1 NC_016856.1 hypothetical protein 3478519 588858004079 STM14_3980 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239473.1 3478331 R 588858 CDS YP_005239474.1 378452114 complement(3478585..3480519) 1 NC_016856.1 inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; ATP-dependent metalloprotease 3480519 hflB 588858004080 hflB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-dependent metalloprotease YP_005239474.1 3478585 R 588858 CDS YP_005239475.1 378452115 complement(3480623..3481249) 1 NC_016856.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 3481249 rrmJ 588858004081 rrmJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 23S rRNA methyltransferase J YP_005239475.1 3480623 R 588858 CDS YP_005239476.1 378452116 3481376..3481669 1 NC_016856.1 RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; RNA-binding protein YhbY 3481669 yhbY 588858004082 yhbY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S RNA-binding protein YhbY YP_005239476.1 3481376 D 588858 CDS YP_005239477.1 378452117 complement(3481825..3482301) 1 NC_016856.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 3482301 greA 588858004083 greA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcription elongation factor GreA YP_005239477.1 3481825 R 588858 CDS YP_005239478.1 378452118 complement(3482355..3482456) 1 NC_016856.1 hypothetical protein 3482456 588858004084 STM14_3985 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239478.1 3482355 R 588858 CDS YP_005239479.1 378452119 3482549..3483982 1 NC_016856.1 penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 3483982 dacB 588858004085 dacB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-alanyl-D-alanine carboxypeptidase YP_005239479.1 3482549 D 588858 CDS YP_005239480.1 378452120 3483983..3484117 1 NC_016856.1 hypothetical protein 3484117 588858004086 STM14_3987 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239480.1 3483983 D 588858 CDS YP_005239481.1 378452121 complement(3484114..3485286) 1 NC_016856.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 3485286 obgE 588858004087 obgE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S GTPase ObgE YP_005239481.1 3484114 R 588858 CDS YP_005239482.1 378452122 complement(3486397..3486654) 1 NC_016856.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 3486654 rpmA 588858004089 rpmA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L27 YP_005239482.1 3486397 R 588858 CDS YP_005239483.1 378452123 complement(3486674..3486985) 1 NC_016856.1 similar to Escherichia coli 50S ribosomal subunit protein L21 (AAC76218.1); 50S ribosomal protein L21 3486985 rplU 588858004090 rplU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L21 YP_005239483.1 3486674 R 588858 CDS YP_005239484.1 378452124 3487069..3488214 1 NC_016856.1 similar to Escherichia coli octaprenyl diphosphate synthase (AAC76219.1); octaprenyl diphosphate synthase 3488214 ispB 588858004091 ispB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S octaprenyl diphosphate synthase YP_005239484.1 3487069 D 588858 CDS YP_005239485.1 378452125 3488446..3488733 1 NC_016856.1 activator of maltose metabolism genes; DNA-binding transcriptional regulator Nlp 3488733 nlp 588858004092 nlp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator Nlp YP_005239485.1 3488446 D 588858 CDS YP_005239486.1 378452126 complement(3488791..3490050) 1 NC_016856.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3490050 murA 588858004093 murA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_005239486.1 3488791 R 588858 CDS YP_005239487.1 378452127 complement(3490104..3490397) 1 NC_016856.1 BolA family; putative transcriptional regulator 3490397 yrbA 588858004094 yrbA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239487.1 3490104 R 588858 CDS YP_005239488.1 378452128 complement(3490436..3490546) 1 NC_016856.1 hypothetical protein 3490546 588858004095 STM14_3996 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239488.1 3490436 R 588858 CDS YP_005239489.1 378452129 complement(3490546..3490842) 1 NC_016856.1 putative STAS domain; hypothetical protein 3490842 yrbB 588858004096 yrbB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239489.1 3490546 R 588858 CDS YP_005239490.1 378452130 complement(3490842..3491477) 1 NC_016856.1 putative ABC superfamily; putative transport protein 3491477 yrbC 588858004097 yrbC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005239490.1 3490842 R 588858 CDS YP_005239491.1 378452131 complement(3491496..3492047) 1 NC_016856.1 putative ABC superfamily binding protein; putative transport protein 3492047 yrbD 588858004098 yrbD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005239491.1 3491496 R 588858 CDS YP_005239492.1 378452132 complement(3492052..3492834) 1 NC_016856.1 putative ABC superfamily membrane protein; putative transport protein 3492834 yrbE 588858004099 yrbE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005239492.1 3492052 R 588858 CDS YP_005239493.1 378452133 complement(3492842..3493654) 1 NC_016856.1 ATP-binding subunit of a putative ABC toluene efflux transporter; putative ABC transporter ATP-binding protein YrbF 3493654 yrbF 588858004100 yrbF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter ATP-binding protein YrbF YP_005239493.1 3492842 R 588858 CDS YP_005239494.1 378452134 3493867..3494844 1 NC_016856.1 YrbG; inner membrane protein involved in cell envelope integrity; putative sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; putative calcium/sodium:proton antiporter 3494844 yrbG 588858004101 yrbG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative calcium/sodium:proton antiporter YP_005239494.1 3493867 D 588858 CDS YP_005239495.1 378452135 3494858..3495844 1 NC_016856.1 similar to Escherichia coli putative isomerase (AAC76229.1); polysialic acid capsule expression protein; D-arabinose 5-phosphate isomerase 3495844 yrbH 588858004102 yrbH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-arabinose 5-phosphate isomerase YP_005239495.1 3494858 D 588858 CDS YP_005239496.1 378452136 3495865..3496431 1 NC_016856.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3496431 yrbI 588858004103 yrbI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_005239496.1 3495865 D 588858 CDS YP_005239497.1 378452137 3496428..3497003 1 NC_016856.1 hypothetical protein 3497003 yrbK 588858004104 yrbK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239497.1 3496428 D 588858 CDS YP_005239498.1 378452138 3496972..3497526 1 NC_016856.1 LptA; periplasmic binding protein part of a putative ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system; hypothetical protein 3497526 yhbN 588858004105 yhbN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239498.1 3496972 D 588858 CDS YP_005239499.1 378452139 3497533..3498258 1 NC_016856.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC76233.1); putative ABC superfamily ATP-binding protein; putative ABC transporter ATP-binding protein YhbG 3498258 yhbG 588858004106 yhbG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter ATP-binding protein YhbG YP_005239499.1 3497533 D 588858 CDS YP_005239500.1 378452140 3498306..3499739 1 NC_016856.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 3499739 rpoN 588858004107 rpoN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S RNA polymerase factor sigma-54 YP_005239500.1 3498306 D 588858 CDS YP_005239501.1 378452141 3499762..3500049 1 NC_016856.1 YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; putative sigma(54) modulation protein 3500049 yhbH 588858004108 yhbH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sigma(54) modulation protein YP_005239501.1 3499762 D 588858 CDS YP_005239502.1 378452142 3500167..3500658 1 NC_016856.1 similar to Escherichia coli phosphotransferase system enzyme IIA; regulates N metabolism (AAC76236.1); sugar-specific enzyme IIA component of PTS 3500658 ptsN 588858004109 ptsN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sugar-specific enzyme IIA component of PTS YP_005239502.1 3500167 D 588858 CDS YP_005239503.1 378452143 3500704..3501558 1 NC_016856.1 putative kinase; contains putative P-loop; hypothetical protein 3501558 yhbJ 588858004110 yhbJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239503.1 3500704 D 588858 CDS YP_005239504.1 378452144 3501555..3501827 1 NC_016856.1 similar to Escherichia coli phosphocarrier protein HPr-like NPr; nitrogen-related; exchanges phosphate with Enzyme I Hpr (AAC76238.1); phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 3501827 ptsO 588858004111 ptsO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) YP_005239504.1 3501555 D 588858 CDS YP_005239505.1 378452145 3502076..3502708 1 NC_016856.1 hypothetical protein 3502708 yrbL 588858004112 yrbL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239505.1 3502076 D 588858 CDS YP_005239506.1 378452146 complement(3502783..3503511) 1 NC_016856.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 3503511 mtgA 588858004113 mtgA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S monofunctional biosynthetic peptidoglycan transglycosylase YP_005239506.1 3502783 R 588858 CDS YP_005239507.1 378452147 complement(3503508..3504161) 1 NC_016856.1 similar to Escherichia coli sigma cross-reacting protein 27A (AAC76241.1); SCRP-27A; isoprenoid biosynthesis protein 3504161 yhbL 588858004114 yhbL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S isoprenoid biosynthesis protein YP_005239507.1 3503508 R 588858 CDS YP_005239508.1 378452148 complement(3504388..3506724) 1 NC_016856.1 sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB 3506724 arcB 588858004115 arcB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aerobic respiration control sensor protein ArcB YP_005239508.1 3504388 R 588858 CDS YP_005239509.1 378452149 complement(3506818..3507747) 1 NC_016856.1 putative FeS oxidoreductase 3507747 yhcC 588858004116 yhcC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative FeS oxidoreductase YP_005239509.1 3506818 R 588858 CDS YP_005239510.1 378452150 complement(3508092..3508241) 1 NC_016856.1 hypothetical protein 3508241 588858004117 STM14_4018 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239510.1 3508092 R 588858 CDS YP_005239511.1 378452151 complement(3508281..3508475) 1 NC_016856.1 hypothetical protein 3508475 588858004118 STM14_4019 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239511.1 3508281 R 588858 CDS YP_005239512.1 378452152 3508419..3512879 1 NC_016856.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 3512879 gltB 588858004119 gltB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamate synthase subunit alpha YP_005239512.1 3508419 D 588858 CDS YP_005239513.1 378452153 3512889..3514307 1 NC_016856.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3514307 gltD 588858004120 gltD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamate synthase subunit beta YP_005239513.1 3512889 D 588858 CDS YP_005239514.1 378452154 3514514..3515617 1 NC_016856.1 putative cytoplasmic protein 3515617 yhcG 588858004121 yhcG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239514.1 3514514 D 588858 CDS YP_005239515.1 378452155 3515633..3515794 1 NC_016856.1 hypothetical protein 3515794 588858004122 STM14_4023 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239515.1 3515633 D 588858 CDS YP_005239516.1 378452156 3515734..3516987 1 NC_016856.1 similar to Escherichia coli cytosine permease/transport (AAC73439.1); cytosine permease 3516987 codB 588858004123 codB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytosine permease YP_005239516.1 3515734 D 588858 CDS YP_005239517.1 378452157 3516974..3518254 1 NC_016856.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3518254 588858004124 STM14_4025 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytosine deaminase YP_005239517.1 3516974 D 588858 CDS YP_005239518.1 378452158 complement(3518337..3518804) 1 NC_016856.1 putative cytoplasmic protein 3518804 yhcH 588858004125 yhcH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239518.1 3518337 R 588858 CDS YP_005239519.1 378452159 complement(3518801..3519676) 1 NC_016856.1 catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase 3519676 nanK 588858004126 nanK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N-acetylmannosamine kinase YP_005239519.1 3518801 R 588858 CDS YP_005239520.1 378452160 complement(3519673..3520362) 1 NC_016856.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 3520362 nanE 588858004127 nanE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N-acetylmannosamine-6-phosphate 2-epimerase YP_005239520.1 3519673 R 588858 CDS YP_005239521.1 378452161 complement(3520409..3521899) 1 NC_016856.1 similar to Escherichia coli sialic acid transporter (AAC76256.1); MFS family; putative sialic acid transporter 3521899 nanT 588858004128 nanT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sialic acid transporter YP_005239521.1 3520409 R 588858 CDS YP_005239522.1 378452162 complement(3522015..3522908) 1 NC_016856.1 catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase 3522908 nanA 588858004129 nanA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N-acetylneuraminate lyase YP_005239522.1 3522015 R 588858 CDS YP_005239523.1 378452163 complement(3523043..3523834) 1 NC_016856.1 Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; transcriptional regulator NanR 3523834 yhcK 588858004130 yhcK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator NanR YP_005239523.1 3523043 R 588858 CDS YP_005239524.1 378452164 complement(3523943..3524443) 1 NC_016856.1 similar to Escherichia coli stringent starvation protein B (AAC76260.1); ClpXP protease specificity-enhancing factor 3524443 sspB 588858004131 sspB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ClpXP protease specificity-enhancing factor YP_005239524.1 3523943 R 588858 CDS YP_005239525.1 378452165 complement(3524449..3525087) 1 NC_016856.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 3525087 sspA 588858004132 sspA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S stringent starvation protein A YP_005239525.1 3524449 R 588858 CDS YP_005239526.1 378452166 3525086..3525205 1 NC_016856.1 hypothetical protein 3525205 588858004133 STM14_4034 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239526.1 3525086 D 588858 CDS YP_005239527.1 378452167 complement(3525350..3526102) 1 NC_016856.1 putative cytoplasmic protein 3526102 588858004134 STM14_4035 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239527.1 3525350 R 588858 CDS YP_005239528.1 378452168 complement(3526302..3526694) 1 NC_016856.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 3526694 rpsI 588858004135 rpsI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S9 YP_005239528.1 3526302 R 588858 CDS YP_005239529.1 378452169 complement(3526710..3527138) 1 NC_016856.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3527138 rplM 588858004136 rplM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L13 YP_005239529.1 3526710 R 588858 CDS YP_005239530.1 378452170 complement(3527441..3528565) 1 NC_016856.1 putative ATPase 3528565 yhcM 588858004137 yhcM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ATPase YP_005239530.1 3527441 R 588858 CDS YP_005239531.1 378452171 3528752..3529156 1 NC_016856.1 cytochrome d ubiquinol oxidase subunit III 3529156 yhcB 588858004138 yhcB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome d ubiquinol oxidase subunit III YP_005239531.1 3528752 D 588858 CDS YP_005239532.1 378452172 3529313..3530680 1 NC_016856.1 similar to Escherichia coli serine endoprotease (AAC76266.1); serine endoprotease 3530680 degQ 588858004139 degQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S serine endoprotease YP_005239532.1 3529313 D 588858 CDS YP_005239533.1 378452173 3530773..3531843 1 NC_016856.1 similar to Escherichia coli protease (AAC76267.1); serine endoprotease 3531843 degS 588858004140 degS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S serine endoprotease YP_005239533.1 3530773 D 588858 CDS YP_005239534.1 378452174 complement(3531877..3532608) 1 NC_016856.1 similar to STM0063; putative inner membrane protein 3532608 588858004141 STM14_4042 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239534.1 3531877 R 588858 CDS YP_005239535.1 378452175 complement(3532628..3533929) 1 NC_016856.1 oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY); putative sodium ion pump oxaloacetate decarboxylase beta chain 3533929 oadB 588858004142 oadB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sodium ion pump oxaloacetate decarboxylase beta chain YP_005239535.1 3532628 R 588858 CDS YP_005239536.1 378452176 complement(3533945..3535720) 1 NC_016856.1 catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B 3535720 oadA 588858004143 oadA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyruvate carboxylase subunit B YP_005239536.1 3533945 R 588858 CDS YP_005239537.1 378452177 complement(3535736..3535990) 1 NC_016856.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 3535990 oadG 588858004144 oadG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S oxaloacetate decarboxylase subunit gamma YP_005239537.1 3535736 R 588858 CDS YP_005239538.1 378452178 complement(3536146..3536763) 1 NC_016856.1 Involved in the tartrate degradation pathway; L(+)-tartrate dehydratase subunit beta 3536763 588858004145 STM14_4046 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L(+)-tartrate dehydratase subunit beta YP_005239538.1 3536146 R 588858 CDS YP_005239539.1 378452179 complement(3536763..3537662) 1 NC_016856.1 Involved in the tartrate degradation pathway; tartrate dehydratase subunit alpha 3537662 588858004146 STM14_4047 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tartrate dehydratase subunit alpha YP_005239539.1 3536763 R 588858 CDS YP_005239540.1 378452180 complement(3537695..3538963) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC75352.1); putative cation transporter 3538963 588858004147 STM14_4048 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cation transporter YP_005239540.1 3537695 R 588858 CDS YP_005239541.1 378452181 complement(3539174..3539839) 1 NC_016856.1 GntR family; putative regulatory protein 3539839 588858004148 STM14_4049 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005239541.1 3539174 R 588858 CDS YP_005239542.1 378452182 complement(3539826..3540455) 1 NC_016856.1 GntR family; putative regulatory protein 3540455 588858004149 STM14_4050 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005239542.1 3539826 R 588858 CDS YP_005239543.1 378452183 complement(3540466..3540597) 1 NC_016856.1 malate dehydrogenase 3540597 588858004150 STM14_4051 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S malate dehydrogenase YP_005239543.1 3540466 R 588858 CDS YP_005239544.1 378452184 complement(3540575..3541513) 1 NC_016856.1 oxidizes malate to oxaloacetate; malate dehydrogenase 3541513 mdh 588858004151 mdh Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S malate dehydrogenase YP_005239544.1 3540575 R 588858 CDS YP_005239545.1 378452185 3541795..3541923 1 NC_016856.1 hypothetical protein 3541923 588858004152 STM14_4053 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239545.1 3541795 D 588858 CDS YP_005239546.1 378452186 3541927..3542397 1 NC_016856.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 3542397 argR 588858004153 argR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S arginine repressor YP_005239546.1 3541927 D 588858 CDS YP_005239547.1 378452187 3542762..3543025 1 NC_016856.1 putative outer membrane protein 3543025 yhcN 588858004154 yhcN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005239547.1 3542762 D 588858 CDS YP_005239548.1 378452188 3543129..3543395 1 NC_016856.1 hypothetical protein 3543395 588858004155 STM14_4056 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239548.1 3543129 D 588858 CDS YP_005239549.1 378452189 complement(3543455..3543727) 1 NC_016856.1 putative cytoplasmic protein 3543727 yhcO 588858004156 yhcO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239549.1 3543455 R 588858 CDS YP_005239550.1 378452190 complement(3543899..3545866) 1 NC_016856.1 with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeB 3545866 yhcP 588858004157 yhcP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S p-hydroxybenzoic acid efflux subunit AaeB YP_005239550.1 3543899 R 588858 CDS YP_005239551.1 378452191 complement(3545872..3546804) 1 NC_016856.1 with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeA 3546804 yhcQ 588858004158 yhcQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S p-hydroxybenzoic acid efflux subunit AaeA YP_005239551.1 3545872 R 588858 CDS YP_005239552.1 378452192 complement(3546812..3547015) 1 NC_016856.1 membrane protein AaeX; the gene is a member of the aaeXAB operon; hypothetical protein 3547015 yhcR 588858004159 yhcR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239552.1 3546812 R 588858 CDS YP_005239553.1 378452193 3547197..3548126 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76275.1); LysR family; putative DNA-binding transcriptional regulator 3548126 yhcS 588858004160 yhcS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA-binding transcriptional regulator YP_005239553.1 3547197 D 588858 CDS YP_005239554.1 378452194 complement(3548249..3549694) 1 NC_016856.1 responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; protease TldD 3549694 tldD 588858004161 tldD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S protease TldD YP_005239554.1 3548249 R 588858 CDS YP_005239555.1 378452195 complement(3549839..3553639) 1 NC_016856.1 hypothetical protein 3553639 yhdP 588858004162 yhdP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239555.1 3549839 R 588858 CDS YP_005239556.1 378452196 complement(3553746..3555215) 1 NC_016856.1 involved in the processing of the 5'end of 16S rRNA; ribonuclease G 3555215 cafA 588858004163 cafA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonuclease G YP_005239556.1 3553746 R 588858 CDS YP_005239557.1 378452197 complement(3555205..3555798) 1 NC_016856.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 3555798 maf_2 588858004164 maf_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Maf-like protein YP_005239557.1 3555205 R 588858 CDS YP_005239558.1 378452198 complement(3555807..3556298) 1 NC_016856.1 part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD 3556298 mreD 588858004165 mreD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S rod shape-determining protein MreD YP_005239558.1 3555807 R 588858 CDS YP_005239559.1 378452199 complement(3556298..3557350) 1 NC_016856.1 similar to Escherichia coli rod shape-determining protein (AAC76282.1); cell wall structural complex MreBCD transmembrane component MreC 3557350 mreC 588858004166 mreC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell wall structural complex MreBCD transmembrane component MreC YP_005239559.1 3556298 R 588858 CDS YP_005239560.1 378452200 complement(3557415..3558458) 1 NC_016856.1 similar to Escherichia coli regulator of ftsI; penicillin binding protein 3; septation function (AAC76283.1); HSP70 class molecular chaperones involved in cell morphogenesis; rod shape-determining protein 3558458 mreB 588858004167 mreB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S rod shape-determining protein YP_005239560.1 3557415 R 588858 CDS YP_005239561.1 378452201 3558566..3558757 1 NC_016856.1 hypothetical protein 3558757 588858004168 STM14_4069 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239561.1 3558566 D 588858 CDS YP_005239562.1 378452202 complement(3558766..3560706) 1 NC_016856.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 3560706 yhdA 588858004169 yhdA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S regulatory protein CsrD YP_005239562.1 3558766 R 588858 CDS YP_005239563.1 378452203 3560910..3561884 1 NC_016856.1 similar to Escherichia coli putative dehydrogenase (AAC76285.1); putative oxidoreductase 3561884 yhdH 588858004170 yhdH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative oxidoreductase YP_005239563.1 3560910 D 588858 CDS YP_005239564.1 378452204 3561997..3563001 1 NC_016856.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 3563001 588858004171 STM14_4072 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sulfite oxidase subunit YedY YP_005239564.1 3561997 D 588858 CDS YP_005239565.1 378452205 3563002..3563601 1 NC_016856.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 3563601 588858004172 STM14_4073 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sulfite oxidase subunit YedZ YP_005239565.1 3563002 D 588858 CDS YP_005239566.1 378452206 complement(3563669..3563851) 1 NC_016856.1 hypothetical protein 3563851 588858004173 STM14_4074 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239566.1 3563669 R 588858 CDS YP_005239567.1 378452207 3563867..3563971 1 NC_016856.1 hypothetical protein 3563971 588858004174 STM14_4075 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239567.1 3563867 D 588858 CDS YP_005239568.1 378452208 3563994..3564464 1 NC_016856.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3564464 accB 588858004175 accB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_005239568.1 3563994 D 588858 CDS YP_005239569.1 378452209 3564475..3565824 1 NC_016856.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 3565824 accC 588858004176 accC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acetyl-CoA carboxylase biotin carboxylase subunit YP_005239569.1 3564475 D 588858 CDS YP_005239570.1 378452210 3565933..3566175 1 NC_016856.1 hypothetical protein 3566175 yhdT 588858004177 yhdT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239570.1 3565933 D 588858 CDS YP_005239571.1 378452211 3566165..3567616 1 NC_016856.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 3567616 panF 588858004178 panF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sodium/panthothenate symporter YP_005239571.1 3566165 D 588858 CDS YP_005239572.1 378452212 3567628..3568509 1 NC_016856.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3568509 prmA 588858004179 prmA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L11 methyltransferase YP_005239572.1 3567628 D 588858 CDS YP_005239573.1 378452213 complement(3568595..3568738) 1 NC_016856.1 hypothetical protein 3568738 588858004180 STM14_4081 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239573.1 3568595 R 588858 CDS YP_005239574.1 378452214 3569170..3570135 1 NC_016856.1 putative TIM-barrel enzyme; hypothetical 35.9 kDa protein in pmrA-fis intergenic region (SW:YHDG_SALTY); tRNA-dihydrouridine synthase B 3570135 yhdG 588858004181 yhdG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tRNA-dihydrouridine synthase B YP_005239574.1 3569170 D 588858 CDS YP_005239575.1 378452215 3570161..3570457 1 NC_016856.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 3570457 fis 588858004182 fis Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding protein Fis YP_005239575.1 3570161 D 588858 CDS YP_005239576.1 378452216 3570543..3571427 1 NC_016856.1 similar to Escherichia coli putative methyltransferase (AAC76294.1); putative methyltransferase 3571427 yhdJ 588858004183 yhdJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative methyltransferase YP_005239576.1 3570543 D 588858 CDS YP_005239577.1 378452217 3571510..3571674 1 NC_016856.1 hypothetical protein 3571674 yhdU 588858004184 yhdU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239577.1 3571510 D 588858 CDS YP_005239578.1 378452218 3571825..3573924 1 NC_016856.1 membrane domain involved in; diguanylate cyclase/phosphodiesterase domain 1; diguanylate cyclase/phosphodiesterase domain 2; putative signal transduction protein 3573924 588858004185 STM14_4086 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative signal transduction protein YP_005239578.1 3571825 D 588858 CDS YP_005239579.1 378452219 complement(3573927..3574589) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator (AAC76296.1); regulator for envCD; acrEF; TetR/AcrR family; DNA-binding transcriptional regulator EnvR 3574589 envR 588858004186 envR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator EnvR YP_005239579.1 3573927 R 588858 CDS YP_005239580.1 378452220 complement(3574592..3574753) 1 NC_016856.1 hypothetical protein 3574753 588858004187 STM14_4088 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239580.1 3574592 R 588858 CDS YP_005239581.1 378452221 3574662..3574820 1 NC_016856.1 hypothetical protein 3574820 588858004188 STM14_4089 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239581.1 3574662 D 588858 CDS YP_005239582.1 378452222 3575003..3576160 1 NC_016856.1 similar to Escherichia coli transmembrane protein affects septum formation and cell membrane permeability (AAC76297.1); acriflavine resistance protein E 3576160 acrE 588858004189 acrE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acriflavine resistance protein E YP_005239582.1 3575003 D 588858 CDS YP_005239583.1 378452223 3576172..3579285 1 NC_016856.1 similar to Escherichia coli integral transmembrane protein; acridine resistance protein F (AAC76298.1); RND family; multidrug transport protein 3579285 acrF 588858004190 acrF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multidrug transport protein YP_005239583.1 3576172 D 588858 CDS YP_005239584.1 378452224 3579521..3579742 1 NC_016856.1 putative outer membrane lipoprotein 3579742 yhdV 588858004191 yhdV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005239584.1 3579521 D 588858 CDS YP_005239585.1 378452225 3579746..3579922 1 NC_016856.1 hypothetical protein 3579922 588858004192 STM14_4093 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239585.1 3579746 D 588858 CDS YP_005239586.1 378452226 complement(3580182..3580316) 1 NC_016856.1 hypothetical protein 3580316 588858004193 STM14_4094 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239586.1 3580182 R 588858 CDS YP_005239587.1 378452227 3580370..3580480 1 NC_016856.1 hypothetical protein 3580480 588858004194 STM14_4095 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239587.1 3580370 D 588858 CDS YP_005239588.1 378452228 3586043..3586165 1 NC_016856.1 hypothetical protein 3586165 588858004201 STM14_4101 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239588.1 3586043 D 588858 CDS YP_005239589.1 378452229 3586340..3586894 1 NC_016856.1 similar to Escherichia coli putative transferase (AAC76304.1); putative ferripyochelin-binding protein 3586894 yrdA 588858004202 yrdA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ferripyochelin-binding protein YP_005239589.1 3586340 D 588858 CDS YP_005239590.1 378452230 complement(3586870..3587127) 1 NC_016856.1 hypothetical protein 3587127 yrdB 588858004203 yrdB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239590.1 3586870 R 588858 CDS YP_005239591.1 378452231 complement(3587124..3587942) 1 NC_016856.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 3587942 aroE_2 588858004204 aroE_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S shikimate 5-dehydrogenase YP_005239591.1 3587124 R 588858 CDS YP_005239592.1 378452232 complement(3587947..3588519) 1 NC_016856.1 RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA; putative ribosome maturation factor 3588519 yrdC 588858004205 yrdC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ribosome maturation factor YP_005239592.1 3587947 R 588858 CDS YP_005239593.1 378452233 complement(3588524..3589066) 1 NC_016856.1 similar to Escherichia coli putative DNA topoisomerase (AAC76308.1); putative DNA topoisomerase 3589066 yrdD 588858004206 yrdD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA topoisomerase YP_005239593.1 3588524 R 588858 CDS YP_005239594.1 378452234 complement(3589093..3589566) 1 NC_016856.1 hypothetical protein 3589566 smg 588858004207 smg Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239594.1 3589093 R 588858 CDS YP_005239595.1 378452235 complement(3589538..3590662) 1 NC_016856.1 similar to Escherichia coli orf; fragment 1 (AAC76311.1); putative protein involved in DNA uptake; hypothetical protein 3590662 smf 588858004208 smf Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239595.1 3589538 R 588858 CDS YP_005239596.1 378452236 3590794..3591303 1 NC_016856.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 3591303 def 588858004209 def Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptide deformylase YP_005239596.1 3590794 D 588858 CDS YP_005239597.1 378452237 3591319..3592266 1 NC_016856.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 3592266 fmt 588858004210 fmt Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S methionyl-tRNA formyltransferase YP_005239597.1 3591319 D 588858 CDS YP_005239598.1 378452238 3592318..3593607 1 NC_016856.1 catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; 16S rRNA methyltransferase B 3593607 sun 588858004211 sun Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 16S rRNA methyltransferase B YP_005239598.1 3592318 D 588858 CDS YP_005239599.1 378452239 3593629..3595005 1 NC_016856.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 3595005 trkA 588858004212 trkA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S potassium transporter peripheral membrane protein YP_005239599.1 3593629 D 588858 CDS YP_005239600.1 378452240 3595147..3595560 1 NC_016856.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 3595560 mscL 588858004213 mscL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S large-conductance mechanosensitive channel YP_005239600.1 3595147 D 588858 CDS YP_005239601.1 378452241 complement(3595496..3595765) 1 NC_016856.1 putative cytoplasmic protein 3595765 588858004214 STM14_4114 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239601.1 3595496 R 588858 CDS YP_005239602.1 378452242 complement(3595823..3596248) 1 NC_016856.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 3596248 zntR 588858004215 zntR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S zinc-responsive transcriptional regulator YP_005239602.1 3595823 R 588858 CDS YP_005239603.1 378452243 complement(3596259..3596627) 1 NC_016856.1 hypothetical protein 3596627 yhdN 588858004216 yhdN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239603.1 3596259 R 588858 CDS YP_005239604.1 378452244 complement(3596735..3597118) 1 NC_016856.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 3597118 rplQ 588858004217 rplQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L17 YP_005239604.1 3596735 R 588858 CDS YP_005239605.1 378452245 complement(3597159..3598148) 1 NC_016856.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 3598148 rpoA 588858004218 rpoA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-directed RNA polymerase subunit alpha YP_005239605.1 3597159 R 588858 CDS YP_005239606.1 378452246 complement(3598174..3598794) 1 NC_016856.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 3598794 rpsD 588858004219 rpsD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S4 YP_005239606.1 3598174 R 588858 CDS YP_005239607.1 378452247 complement(3598828..3599217) 1 NC_016856.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 3599217 rpsK 588858004220 rpsK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S11 YP_005239607.1 3598828 R 588858 CDS YP_005239608.1 378452248 complement(3599234..3599590) 1 NC_016856.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 3599590 rpsM 588858004221 rpsM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S13 YP_005239608.1 3599234 R 588858 CDS YP_005239609.1 378452249 complement(3599737..3599853) 1 NC_016856.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 3599853 rpmJ_2 588858004222 rpmJ_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L36 YP_005239609.1 3599737 R 588858 CDS YP_005239610.1 378452250 complement(3599885..3601216) 1 NC_016856.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 3601216 secY 588858004223 secY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S preprotein translocase subunit SecY YP_005239610.1 3599885 R 588858 CDS YP_005239611.1 378452251 complement(3601224..3601658) 1 NC_016856.1 late assembly protein; 50S ribosomal protein L15 3601658 rplO 588858004224 rplO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L15 YP_005239611.1 3601224 R 588858 CDS YP_005239612.1 378452252 complement(3601662..3601841) 1 NC_016856.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 3601841 rpmD 588858004225 rpmD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L30 YP_005239612.1 3601662 R 588858 CDS YP_005239613.1 378452253 complement(3601845..3602348) 1 NC_016856.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 3602348 rpsE 588858004226 rpsE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S5 YP_005239613.1 3601845 R 588858 CDS YP_005239614.1 378452254 complement(3602363..3602716) 1 NC_016856.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 3602716 rplR 588858004227 rplR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L18 YP_005239614.1 3602363 R 588858 CDS YP_005239615.1 378452255 complement(3602726..3603259) 1 NC_016856.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 3603259 rplF 588858004228 rplF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L6 YP_005239615.1 3602726 R 588858 CDS YP_005239616.1 378452256 complement(3603272..3603664) 1 NC_016856.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 3603664 rpsH 588858004229 rpsH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S8 YP_005239616.1 3603272 R 588858 CDS YP_005239617.1 378452257 complement(3603698..3603988) 1 NC_016856.1 similar to Escherichia coli 30S ribosomal subunit protein S14 (AAC76332.1); 30S ribosomal protein S14 3603988 rpsN 588858004230 rpsN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S14 YP_005239617.1 3603698 R 588858 CDS YP_005239618.1 378452258 complement(3604018..3604557) 1 NC_016856.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 3604557 rplE 588858004231 rplE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L5 YP_005239618.1 3604018 R 588858 CDS YP_005239619.1 378452259 complement(3604572..3604886) 1 NC_016856.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 3604886 rplX 588858004232 rplX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L24 YP_005239619.1 3604572 R 588858 CDS YP_005239620.1 378452260 complement(3604897..3605268) 1 NC_016856.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 3605268 rplN 588858004233 rplN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L14 YP_005239620.1 3604897 R 588858 CDS YP_005239621.1 378452261 complement(3605432..3605686) 1 NC_016856.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 3605686 rpsQ 588858004234 rpsQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S17 YP_005239621.1 3605432 R 588858 CDS YP_005239622.1 378452262 complement(3605686..3605877) 1 NC_016856.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 3605877 rpmC 588858004235 rpmC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L29 YP_005239622.1 3605686 R 588858 CDS YP_005239623.1 378452263 complement(3605877..3606287) 1 NC_016856.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 3606287 rplP 588858004236 rplP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L16 YP_005239623.1 3605877 R 588858 CDS YP_005239624.1 378452264 complement(3606300..3607001) 1 NC_016856.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 3607001 rpsC 588858004237 rpsC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S3 YP_005239624.1 3606300 R 588858 CDS YP_005239625.1 378452265 complement(3607019..3607351) 1 NC_016856.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 3607351 rplV 588858004238 rplV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L22 YP_005239625.1 3607019 R 588858 CDS YP_005239626.1 378452266 complement(3607366..3607644) 1 NC_016856.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 3607644 rpsS 588858004239 rpsS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S19 YP_005239626.1 3607366 R 588858 CDS YP_005239627.1 378452267 complement(3607661..3608482) 1 NC_016856.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 3608482 rplB 588858004240 rplB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L2 YP_005239627.1 3607661 R 588858 CDS YP_005239628.1 378452268 complement(3608500..3608802) 1 NC_016856.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 3608802 rplW 588858004241 rplW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L23 YP_005239628.1 3608500 R 588858 CDS YP_005239629.1 378452269 complement(3608799..3609404) 1 NC_016856.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 3609404 rplD 588858004242 rplD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L4 YP_005239629.1 3608799 R 588858 CDS YP_005239630.1 378452270 complement(3609415..3610044) 1 NC_016856.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 3610044 rplC 588858004243 rplC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L3 YP_005239630.1 3609415 R 588858 CDS YP_005239631.1 378452271 complement(3610077..3610388) 1 NC_016856.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 3610388 rpsJ 588858004244 rpsJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S10 YP_005239631.1 3610077 R 588858 CDS YP_005239632.1 378452272 3610642..3611235 1 NC_016856.1 similar to Escherichia coli leader peptidase; integral membrane protein (AAC76360.1); leader peptidase HopD 3611235 hopD 588858004245 hopD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S leader peptidase HopD YP_005239632.1 3610642 D 588858 CDS YP_005239633.1 378452273 complement(3611232..3611708) 1 NC_016856.1 bacterioferritin; BFR; cytochrome B-1; cytochrome B-557 (SW:BFR_SALTY); iron storage homoprotein; bacterioferritin, iron storage and detoxification protein 3611708 bfr 588858004246 bfr Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bacterioferritin, iron storage and detoxification protein YP_005239633.1 3611232 R 588858 CDS YP_005239634.1 378452274 complement(3611781..3611975) 1 NC_016856.1 regulatory or redox component complexing with Bfr in iron storage and mobility (SW:BFD_SALTY); bacterioferritin-associated ferredoxin 3611975 bfd 588858004247 bfd Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bacterioferritin-associated ferredoxin YP_005239634.1 3611781 R 588858 CDS YP_005239635.1 378452275 complement(3611988..3612179) 1 NC_016856.1 elongation factor Tu 3612179 588858004248 STM14_4148 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S elongation factor Tu YP_005239635.1 3611988 R 588858 CDS YP_005239636.1 378452276 complement(3612160..3613344) 1 NC_016856.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 3613344 tuf_1 588858004249 tuf_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S elongation factor Tu YP_005239636.1 3612160 R 588858 CDS YP_005239637.1 378452277 complement(3613416..3615530) 1 NC_016856.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3615530 fusA 588858004250 fusA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S elongation factor G YP_005239637.1 3613416 R 588858 CDS YP_005239638.1 378452278 complement(3615627..3616097) 1 NC_016856.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 3616097 rpsG 588858004251 rpsG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S7 YP_005239638.1 3615627 R 588858 CDS YP_005239639.1 378452279 complement(3616193..3616567) 1 NC_016856.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 3616567 rpsL 588858004252 rpsL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S12 YP_005239639.1 3616193 R 588858 CDS YP_005239640.1 378452280 complement(3616693..3616980) 1 NC_016856.1 with TusACD and E is part of a sulfur transfer system which is required for synthesis of 2-thiouridine 5-methylaminomethyl-2-thiouridine at tRNA wobble positions; TusBCD acts as a sulfur mediator; tRNA 2-thiouridine synthesizing protein B 3616980 yheL 588858004253 yheL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tRNA 2-thiouridine synthesizing protein B YP_005239640.1 3616693 R 588858 CDS YP_005239641.1 378452281 complement(3616988..3617344) 1 NC_016856.1 hypothetical protein 3617344 yheM 588858004254 yheM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239641.1 3616988 R 588858 CDS YP_005239642.1 378452282 complement(3617344..3617730) 1 NC_016856.1 putative ACR involved in intracellular sulfur reduction; hypothetical protein 3617730 yheN 588858004255 yheN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239642.1 3617344 R 588858 CDS YP_005239643.1 378452283 complement(3617730..3618452) 1 NC_016856.1 putative regulatory protein 3618452 yheO 588858004256 yheO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005239643.1 3617730 R 588858 CDS YP_005239644.1 378452284 complement(3618729..3619547) 1 NC_016856.1 rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase 3619547 fkpA 588858004257 fkpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S FKBP-type peptidyl-prolyl cis-trans isomerase YP_005239644.1 3618729 R 588858 CDS YP_005239645.1 378452285 3619767..3619985 1 NC_016856.1 similar to Escherichia coli host factor for lysis of phiX174 infection (AAC76373.1); hypothetical protein 3619985 slyX 588858004258 slyX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239645.1 3619767 D 588858 CDS YP_005239646.1 378452286 complement(3620173..3620763) 1 NC_016856.1 rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase 3620763 slyD 588858004259 slyD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S FKBP-type peptidyl-prolyl cis-trans isomerase YP_005239646.1 3620173 R 588858 CDS YP_005239647.1 378452287 complement(3620858..3621058) 1 NC_016856.1 putative cytoplasmic protein 3621058 yheV 588858004260 yheV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239647.1 3620858 R 588858 CDS YP_005239648.1 378452288 complement(3621069..3622874) 1 NC_016856.1 involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB 3622874 kefB 588858004261 kefB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutathione-regulated potassium-efflux system protein KefB YP_005239648.1 3621069 R 588858 CDS YP_005239649.1 378452289 complement(3622874..3623425) 1 NC_016856.1 required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG 3623425 yheR 588858004262 yheR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutathione-regulated potassium-efflux system ancillary protein KefG YP_005239649.1 3622874 R 588858 CDS YP_005239650.1 378452290 3623551..3623655 1 NC_016856.1 hypothetical protein 3623655 588858004263 STM14_4163 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239650.1 3623551 D 588858 CDS YP_005239651.1 378452291 3623691..3625598 1 NC_016856.1 similar to Escherichia coli putative ATP-binding component (AAC76377.1); contains duplicated ATPase domain; putative ABC transporter ATP-binding protein 3625598 yheS 588858004264 yheS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter ATP-binding protein YP_005239651.1 3623691 D 588858 CDS YP_005239652.1 378452292 complement(3625984..3626295) 1 NC_016856.1 hypothetical protein 3626295 588858004266 STM14_4166 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239652.1 3625984 R 588858 CDS YP_005239653.1 378452293 3626355..3626480 1 NC_016856.1 hypothetical protein 3626480 588858004267 STM14_4167 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239653.1 3626355 D 588858 CDS YP_005239654.1 378452294 3626493..3627560 1 NC_016856.1 alpha/beta-hydrolase fold; putative hydrolase 3627560 yheT 588858004268 yheT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrolase YP_005239654.1 3626493 D 588858 CDS YP_005239655.1 378452295 3627557..3627775 1 NC_016856.1 hypothetical protein 3627775 yheU 588858004269 yheU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239655.1 3627557 D 588858 CDS YP_005239656.1 378452296 3627827..3628696 1 NC_016856.1 similar to Escherichia coli probable phosphoribulokinase (AAC76380.1); putative phosphoribulokinase 3628696 prkB 588858004270 prkB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phosphoribulokinase YP_005239656.1 3627827 D 588858 CDS YP_005239657.1 378452297 complement(3628792..3629196) 1 NC_016856.1 hypothetical protein 3629196 yhfA 588858004271 yhfA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239657.1 3628792 R 588858 CDS YP_005239658.1 378452298 3629162..3629344 1 NC_016856.1 hypothetical protein 3629344 588858004272 STM14_4172 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239658.1 3629162 D 588858 CDS YP_005239659.1 378452299 3629504..3630136 1 NC_016856.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 3630136 crp 588858004273 crp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cAMP-regulatory protein YP_005239659.1 3629504 D 588858 CDS YP_005239660.1 378452300 3630185..3632272 1 NC_016856.1 putative inner membrane protein 3632272 yhfK 588858004274 yhfK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239660.1 3630185 D 588858 CDS YP_005239661.1 378452301 complement(3632315..3633532) 1 NC_016856.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 3633532 argD_2 588858004275 argD_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_005239661.1 3632315 R 588858 CDS YP_005239662.1 378452302 complement(3633618..3634181) 1 NC_016856.1 aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II 3634181 pabA 588858004276 pabA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S para-aminobenzoate synthase component II YP_005239662.1 3633618 R 588858 CDS YP_005239663.1 378452303 complement(3634213..3634815) 1 NC_016856.1 cell filamentation protein Fic (SW:FIC_SALTY); stationary phase induced gene; affects cell division; cell filamentation protein Fic 3634815 fic 588858004277 fic Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell filamentation protein Fic YP_005239663.1 3634213 R 588858 CDS YP_005239664.1 378452304 complement(3634805..3634972) 1 NC_016856.1 hypothetical 6.8 kDa protein in fic-ppiA intergenic region (SW:YHFG_SALTY); hypothetical protein 3634972 yhfG 588858004278 yhfG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239664.1 3634805 R 588858 CDS YP_005239665.1 378452305 complement(3635081..3635653) 1 NC_016856.1 peptidyl-prolyl cis-trans isomerase A (SW:PPIA_SALTY); rotamase A; peptidyl-prolyl cis-trans isomerase A 3635653 ppiA 588858004279 ppiA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptidyl-prolyl cis-trans isomerase A YP_005239665.1 3635081 R 588858 CDS YP_005239666.1 378452306 3635785..3635937 1 NC_016856.1 hypothetical protein 3635937 588858004280 STM14_4180 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239666.1 3635785 D 588858 CDS YP_005239667.1 378452307 3635930..3637111 1 NC_016856.1 similar to Escherichia coli putative transport (AAC76389.1); MFS family; hypothetical protein 3637111 yhfC 588858004281 yhfC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239667.1 3635930 D 588858 CDS YP_005239668.1 378452308 complement(3637245..3637421) 1 NC_016856.1 hypothetical protein 3637421 588858004282 STM14_4182 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239668.1 3637245 R 588858 CDS YP_005239669.1 378452309 3637374..3639917 1 NC_016856.1 similar to Escherichia coli nitrite reductase-NAD(P)H subunit (AAC76390.1); nitrite reductase large subunit 3639917 nirB 588858004283 nirB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrite reductase large subunit YP_005239669.1 3637374 D 588858 CDS YP_005239670.1 378452310 3639914..3640240 1 NC_016856.1 involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; nitrite reductase small subunit 3640240 nirD 588858004284 nirD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrite reductase small subunit YP_005239670.1 3639914 D 588858 CDS YP_005239671.1 378452311 complement(3640241..3640396) 1 NC_016856.1 hypothetical protein 3640396 588858004285 STM14_4185 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239671.1 3640241 R 588858 CDS YP_005239672.1 378452312 3640506..3641315 1 NC_016856.1 member of the FNT family of formate and nitrite transporters; nitrite transporter NirC 3641315 nirC 588858004286 nirC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrite transporter NirC YP_005239672.1 3640506 D 588858 CDS YP_005239673.1 378452313 3641327..3642700 1 NC_016856.1 multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin; siroheme synthase 3642700 cysG 588858004287 cysG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S siroheme synthase YP_005239673.1 3641327 D 588858 CDS YP_005239674.1 378452314 3643029..3648923 1 NC_016856.1 putative surface-exposed virulence protein BigA (gi|5081595); putative surface-exposed virulence protein 3648923 bigA 588858004288 bigA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative surface-exposed virulence protein YP_005239674.1 3643029 D 588858 CDS YP_005239675.1 378452315 complement(3649055..3649513) 1 NC_016856.1 transposase for insertion sequence element is200 (SW:T200_SALTY); transposase for IS200 3649513 tnpA_10 588858004289 tnpA_10 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transposase for IS200 YP_005239675.1 3649055 R 588858 CDS YP_005239676.1 378452316 complement(3649470..3649658) 1 NC_016856.1 hypothetical protein 3649658 588858004290 STM14_4190 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239676.1 3649470 R 588858 CDS YP_005239677.1 378452317 3649827..3649997 1 NC_016856.1 putative outer membrane lipoprotein 3649997 yhfL 588858004291 yhfL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005239677.1 3649827 D 588858 CDS YP_005239678.1 378452318 complement(3649991..3650131) 1 NC_016856.1 hypothetical protein 3650131 588858004292 STM14_4192 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239678.1 3649991 R 588858 CDS YP_005239679.1 378452319 complement(3650142..3651146) 1 NC_016856.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 3651146 trpS 588858004293 trpS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tryptophanyl-tRNA synthetase YP_005239679.1 3650142 R 588858 CDS YP_005239680.1 378452320 complement(3651139..3651897) 1 NC_016856.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 3651897 gph 588858004294 gph Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoglycolate phosphatase YP_005239680.1 3651139 R 588858 CDS YP_005239681.1 378452321 complement(3651890..3652567) 1 NC_016856.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 3652567 rpe 588858004295 rpe Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribulose-phosphate 3-epimerase YP_005239681.1 3651890 R 588858 CDS YP_005239682.1 378452322 complement(3652585..3653421) 1 NC_016856.1 DNA adenine methylase (SW:DMA_SALTY); DNA adenine methylase 3653421 dam 588858004296 dam Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA adenine methylase YP_005239682.1 3652585 R 588858 CDS YP_005239683.1 378452323 complement(3653602..3654879) 1 NC_016856.1 similar to Escherichia coli putative membrane protein; overproduction may interfere with cell division (AAC76413.1); hypothetical protein 3654879 damX 588858004297 damX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239683.1 3653602 R 588858 CDS YP_005239684.1 378452324 complement(3654977..3656065) 1 NC_016856.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 3656065 aroB 588858004298 aroB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-dehydroquinate synthase YP_005239684.1 3654977 R 588858 CDS YP_005239685.1 378452325 complement(3656122..3656643) 1 NC_016856.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 3656643 aroK 588858004299 aroK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S shikimate kinase I YP_005239685.1 3656122 R 588858 CDS YP_005239686.1 378452326 complement(3657108..3658346) 1 NC_016856.1 outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; outer membrane porin HofQ 3658346 hofQ 588858004300 hofQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane porin HofQ YP_005239686.1 3657108 R 588858 CDS YP_005239687.1 378452327 complement(3658261..3658662) 1 NC_016856.1 putative inner membrane protein 3658662 yrfA 588858004301 yrfA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239687.1 3658261 R 588858 CDS YP_005239688.1 378452328 complement(3658652..3659125) 1 NC_016856.1 putative inner membrane protein 3659125 yrfB 588858004302 yrfB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239688.1 3658652 R 588858 CDS YP_005239689.1 378452329 complement(3659109..3659648) 1 NC_016856.1 putative inner membrane protein 3659648 yrfC 588858004303 yrfC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239689.1 3659109 R 588858 CDS YP_005239690.1 378452330 complement(3659648..3660427) 1 NC_016856.1 hypothetical protein 3660427 yrfD 588858004304 yrfD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239690.1 3659648 R 588858 CDS YP_005239691.1 378452331 3660524..3663100 1 NC_016856.1 bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; peptidoglycan synthetase 3663100 mrcA 588858004305 mrcA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptidoglycan synthetase YP_005239691.1 3660524 D 588858 CDS YP_005239692.1 378452332 complement(3663196..3663759) 1 NC_016856.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 3663759 nudE 588858004306 nudE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ADP-ribose diphosphatase NudE YP_005239692.1 3663196 R 588858 CDS YP_005239693.1 378452333 complement(3663870..3663983) 1 NC_016856.1 hypothetical protein 3663983 588858004307 STM14_4207 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239693.1 3663870 R 588858 CDS YP_005239694.1 378452334 3664082..3666214 1 NC_016856.1 similar to Escherichia coli putative dehydrogenase (AAC76423.1); putative inner membrane protein 3666214 yrfF 588858004308 yrfF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239694.1 3664082 D 588858 CDS YP_005239695.1 378452335 3666279..3666947 1 NC_016856.1 similar to Escherichia coli putative phosphatase (AAC76424.1); putative hydrolase 3666947 yrfG 588858004309 yrfG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrolase YP_005239695.1 3666279 D 588858 CDS YP_005239696.1 378452336 3666958..3667359 1 NC_016856.1 predicted small RNA-binding protein; ribosome-associated heat shock protein Hsp15 3667359 yrfH 588858004310 yrfH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribosome-associated heat shock protein Hsp15 YP_005239696.1 3666958 D 588858 CDS YP_005239697.1 378452337 3667384..3668262 1 NC_016856.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 3668262 hslO 588858004311 hslO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Hsp33-like chaperonin YP_005239697.1 3667384 D 588858 CDS YP_005239698.1 378452338 complement(3668372..3670081) 1 NC_016856.1 similar to Escherichia coli putative transport (AAC76427.1); putative inner membrane protein 3670081 yhgE 588858004312 yhgE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239698.1 3668372 R 588858 CDS YP_005239699.1 378452339 complement(3670273..3670407) 1 NC_016856.1 hypothetical protein 3670407 588858004313 STM14_4213 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239699.1 3670273 R 588858 CDS YP_005239700.1 378452340 3670342..3670449 1 NC_016856.1 hypothetical protein 3670449 588858004314 STM14_4214 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239700.1 3670342 D 588858 CDS YP_005239701.1 378452341 3670461..3672080 1 NC_016856.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 3672080 pckA 588858004315 pckA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoenolpyruvate carboxykinase YP_005239701.1 3670461 D 588858 CDS YP_005239702.1 378452342 complement(3672155..3673507) 1 NC_016856.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 3673507 envZ 588858004316 envZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S osmolarity sensor protein YP_005239702.1 3672155 R 588858 CDS YP_005239703.1 378452343 complement(3673504..3674223) 1 NC_016856.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 3674223 ompR 588858004317 ompR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S osmolarity response regulator YP_005239703.1 3673504 R 588858 CDS YP_005239704.1 378452344 3674449..3674922 1 NC_016856.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 3674922 greB 588858004318 greB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcription elongation factor GreB YP_005239704.1 3674449 D 588858 CDS YP_005239705.1 378452345 3675024..3677351 1 NC_016856.1 putative RNase R 3677351 yhgF 588858004319 yhgF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative RNase R YP_005239705.1 3675024 D 588858 CDS YP_005239706.1 378452346 3677538..3677768 1 NC_016856.1 hypothetical protein 3677768 588858004320 STM14_4220 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239706.1 3677538 D 588858 CDS YP_005239707.1 378452347 3677788..3678015 1 NC_016856.1 similar to Escherichia coli ferrous iron transport protein A (AAC76433.1); ferrous iron transport protein A 3678015 feoA 588858004321 feoA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ferrous iron transport protein A YP_005239707.1 3677788 D 588858 CDS YP_005239708.1 378452348 3678034..3680352 1 NC_016856.1 cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; ferrous iron transport protein B 3680352 feoB 588858004322 feoB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ferrous iron transport protein B YP_005239708.1 3678034 D 588858 CDS YP_005239709.1 378452349 3680365..3680601 1 NC_016856.1 putative cytoplasmic protein 3680601 yhgG 588858004323 yhgG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239709.1 3680365 D 588858 CDS YP_005239710.1 378452350 3680653..3680766 1 NC_016856.1 hypothetical protein 3680766 588858004324 STM14_4224 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239710.1 3680653 D 588858 CDS YP_005239711.1 378452351 3680836..3681750 1 NC_016856.1 putative cytoplasmic protein 3681750 588858004325 STM14_4225 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239711.1 3680836 D 588858 CDS YP_005239712.1 378452352 complement(3681786..3682556) 1 NC_016856.1 Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; carboxylesterase BioH 3682556 bioH 588858004326 bioH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S carboxylesterase BioH YP_005239712.1 3681786 R 588858 CDS YP_005239713.1 378452353 3682594..3683277 1 NC_016856.1 involved in high-affinity gluconate transport; gluconate periplasmic binding protein 3683277 yhgH 588858004327 yhgH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S gluconate periplasmic binding protein YP_005239713.1 3682594 D 588858 CDS YP_005239714.1 378452354 3683336..3683911 1 NC_016856.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein 3683911 yhgI 588858004328 yhgI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA uptake protein YP_005239714.1 3683336 D 588858 CDS YP_005239715.1 378452355 complement(3684140..3684289) 1 NC_016856.1 hypothetical protein 3684289 588858004329 STM14_4229 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239715.1 3684140 R 588858 CDS YP_005239716.1 378452356 3684288..3685604 1 NC_016856.1 similar to Escherichia coli high-affinity transport of gluconate/gluconate permease (AAC76440.1); GntP family; GNT I system; high-affinity gluconate permease 3685604 gntT 588858004330 gntT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S high-affinity gluconate permease YP_005239716.1 3684288 D 588858 CDS YP_005239717.1 378452357 complement(3685723..3687801) 1 NC_016856.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 3687801 malQ 588858004331 malQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-alpha-glucanotransferase YP_005239717.1 3685723 R 588858 CDS YP_005239718.1 378452358 complement(3687811..3690204) 1 NC_016856.1 similar to Escherichia coli maltodextrin phosphorylase (AAC76442.1); maltodextrin phosphorylase 3690204 malP 588858004332 malP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S maltodextrin phosphorylase YP_005239718.1 3687811 R 588858 CDS YP_005239719.1 378452359 complement(3690393..3690500) 1 NC_016856.1 hypothetical protein 3690500 588858004333 STM14_4233 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239719.1 3690393 R 588858 CDS YP_005239720.1 378452360 3690798..3693503 1 NC_016856.1 Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT 3693503 malT 588858004334 malT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator MalT YP_005239720.1 3690798 D 588858 CDS YP_005239721.1 378452361 complement(3693591..3693866) 1 NC_016856.1 putative cytoplasmic protein 3693866 588858004335 STM14_4235 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239721.1 3693591 R 588858 CDS YP_005239722.1 378452362 complement(3693869..3694129) 1 NC_016856.1 similar to Escherichia coli damage-inducible protein J (AAC73330.1); putative DNA-damage-inducibile protein 3694129 588858004336 STM14_4236 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA-damage-inducibile protein YP_005239722.1 3693869 R 588858 CDS YP_005239723.1 378452363 complement(3694238..3695257) 1 NC_016856.1 catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester; RNA 3'-terminal-phosphate cyclase 3695257 rtcA 588858004337 rtcA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S RNA 3'-terminal-phosphate cyclase YP_005239723.1 3694238 R 588858 CDS YP_005239724.1 378452364 complement(3695261..3696478) 1 NC_016856.1 putative cytoplasmic protein 3696478 rtcB 588858004338 rtcB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239724.1 3695261 R 588858 CDS YP_005239725.1 378452365 complement(3696823..3698376) 1 NC_016856.1 putative ribonucleoprotein related-protein 3698376 588858004339 STM14_4239 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ribonucleoprotein related-protein YP_005239725.1 3696823 R 588858 CDS YP_005239726.1 378452366 complement(3698369..3698491) 1 NC_016856.1 hypothetical protein 3698491 588858004340 STM14_4240 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239726.1 3698369 R 588858 CDS YP_005239727.1 378452367 3698566..3700149 1 NC_016856.1 similar to Escherichia coli putative 2-component regulator (AAC76447.1); sigma N; sigma 54-dependent regulator of rtcBA expression; EBP family; sigma N 3700149 rtcR 588858004341 rtcR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sigma N YP_005239727.1 3698566 D 588858 CDS YP_005239728.1 378452368 complement(3700146..3700904) 1 NC_016856.1 represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism; DNA-binding transcriptional repressor GlpR 3700904 glpR 588858004342 glpR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional repressor GlpR YP_005239728.1 3700146 R 588858 CDS YP_005239729.1 378452369 complement(3700901..3701017) 1 NC_016856.1 hypothetical protein 3701017 588858004343 STM14_4243 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239729.1 3700901 R 588858 CDS YP_005239730.1 378452370 complement(3700998..3701828) 1 NC_016856.1 protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; intramembrane serine protease GlpG 3701828 glpG 588858004344 glpG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S intramembrane serine protease GlpG YP_005239730.1 3700998 R 588858 CDS YP_005239731.1 378452371 complement(3701904..3702230) 1 NC_016856.1 belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase 3702230 glpE 588858004345 glpE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiosulfate sulfurtransferase YP_005239731.1 3701904 R 588858 CDS YP_005239732.1 378452372 3702429..3703937 1 NC_016856.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 3703937 glpD 588858004346 glpD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycerol-3-phosphate dehydrogenase YP_005239732.1 3702429 D 588858 CDS YP_005239733.1 378452373 complement(3703984..3704529) 1 NC_016856.1 hypothetical protein 3704529 588858004347 STM14_4247 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239733.1 3703984 R 588858 CDS YP_005239734.1 378452374 complement(3704539..3706098) 1 NC_016856.1 putative periplasmic phosphate-binding protein 3706098 588858004348 STM14_4248 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative periplasmic phosphate-binding protein YP_005239734.1 3704539 R 588858 CDS YP_005239735.1 378452375 complement(3706192..3707301) 1 NC_016856.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 3707301 gldA_1 588858004349 gldA_1 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycerol dehydrogenase YP_005239735.1 3706192 R 588858 CDS YP_005239736.1 378452376 3708970..3710685 1 NC_016856.1 similar to Escherichia coli putative dehydratase (AAC73372.1); putative dihydroxyacid dehydratase 3710685 588858004351 STM14_4251 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dihydroxyacid dehydratase YP_005239736.1 3708970 D 588858 CDS YP_005239737.1 378452377 3710729..3711634 1 NC_016856.1 similar to Escherichia coli putative lyase/synthase (AAC73371.1); dihydrodipicolinate synthase 3711634 588858004352 STM14_4252 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dihydrodipicolinate synthase YP_005239737.1 3710729 D 588858 CDS YP_005239738.1 378452378 complement(3711678..3712433) 1 NC_016856.1 similar to Escherichia coli putative regulator (AAC75308.1); putative transcriptional regulator 3712433 588858004353 STM14_4253 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239738.1 3711678 R 588858 CDS YP_005239739.1 378452379 complement(3712611..3715058) 1 NC_016856.1 similar to Escherichia coli glycogen phosphorylase (AAC76453.1); glycogen phosphorylase 3715058 glgP 588858004354 glgP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycogen phosphorylase YP_005239739.1 3712611 R 588858 CDS YP_005239740.1 378452380 complement(3715078..3716511) 1 NC_016856.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 3716511 glgA 588858004355 glgA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycogen synthase YP_005239740.1 3715078 R 588858 CDS YP_005239741.1 378452381 complement(3716511..3717806) 1 NC_016856.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 3717806 glgC 588858004356 glgC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucose-1-phosphate adenylyltransferase YP_005239741.1 3716511 R 588858 CDS YP_005239742.1 378452382 complement(3717821..3719797) 1 NC_016856.1 catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen; glycogen debranching protein 3719797 glgX 588858004357 glgX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycogen debranching protein YP_005239742.1 3717821 R 588858 CDS YP_005239743.1 378452383 complement(3719794..3721980) 1 NC_016856.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 3721980 glgB 588858004358 glgB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycogen branching protein YP_005239743.1 3719794 R 588858 CDS YP_005239744.1 378452384 complement(3722125..3722298) 1 NC_016856.1 hypothetical protein 3722298 588858004359 STM14_4259 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239744.1 3722125 R 588858 CDS YP_005239745.1 378452385 complement(3722327..3723433) 1 NC_016856.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 3723433 asd 588858004360 asd Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aspartate-semialdehyde dehydrogenase YP_005239745.1 3722327 R 588858 CDS YP_005239746.1 378452386 3723463..3723627 1 NC_016856.1 hypothetical protein 3723627 588858004361 STM14_4261 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239746.1 3723463 D 588858 CDS YP_005239747.1 378452387 3723698..3723940 1 NC_016856.1 putative inner membrane protein 3723940 588858004363 STM14_4263 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239747.1 3723698 D 588858 CDS YP_005239748.1 378452388 complement(3723857..3725197) 1 NC_016856.1 similar to Escherichia coli low-affinity gluconate transport permease protein, interrupted (AAC76461.1); low affinity gluconate transporter 3725197 gntU 588858004364 gntU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S low affinity gluconate transporter YP_005239748.1 3723857 R 588858 CDS YP_005239749.1 378452389 complement(3725194..3725727) 1 NC_016856.1 thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; gluconate kinase 3725727 gntK 588858004365 gntK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S gluconate kinase YP_005239749.1 3725194 R 588858 CDS YP_005239750.1 378452390 complement(3725866..3726861) 1 NC_016856.1 similar to Escherichia coli regulator of gluconate operon (AAC76463.1); gntUKR (GalR/LacI familiy; gluconate operon transcriptional repressor 3726861 gntR 588858004366 gntR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S gluconate operon transcriptional repressor YP_005239750.1 3725866 R 588858 CDS YP_005239751.1 378452391 complement(3726991..3727686) 1 NC_016856.1 putative cytoplasmic protein 3727686 yhhW 588858004367 yhhW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239751.1 3726991 R 588858 CDS YP_005239752.1 378452392 complement(3727810..3728847) 1 NC_016856.1 similar to Escherichia coli putative regulator (AAC76465.1); putative dehydrogenase 3728847 yhhX 588858004368 yhhX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dehydrogenase YP_005239752.1 3727810 R 588858 CDS YP_005239753.1 378452393 3728906..3729031 1 NC_016856.1 hypothetical protein 3729031 588858004369 STM14_4269 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239753.1 3728906 D 588858 CDS YP_005239754.1 378452394 3729191..3729319 1 NC_016856.1 hypothetical protein 3729319 588858004370 STM14_4270 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239754.1 3729191 D 588858 CDS YP_005239755.1 378452395 3729316..3729804 1 NC_016856.1 YhhY; regulated by the fur regulator; unknown function; putative acetyltransferase YhhY 3729804 yhhY 588858004371 yhhY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative acetyltransferase YhhY YP_005239755.1 3729316 D 588858 CDS YP_005239756.1 378452396 3730068..3731282 1 NC_016856.1 ORF408 (gi|4456874); regulator of sugar metabolism; putative transcriptional regulator 3731282 588858004372 STM14_4272 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239756.1 3730068 D 588858 CDS YP_005239757.1 378452397 3731298..3732059 1 NC_016856.1 ORF 245 (gi|4456875); similar to STM1381; putative cytoplasmic protein 3732059 588858004373 STM14_4273 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239757.1 3731298 D 588858 CDS YP_005239758.1 378452398 3732113..3733084 1 NC_016856.1 putative inner membrane protein 3733084 588858004374 STM14_4274 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239758.1 3732113 D 588858 CDS YP_005239759.1 378452399 3733081..3734115 1 NC_016856.1 similar to Escherichia coli putative hydrolase (AAC76404.1); putative phosphotriesterase 3734115 588858004375 STM14_4275 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phosphotriesterase YP_005239759.1 3733081 D 588858 CDS YP_005239760.1 378452400 complement(3734160..3735902) 1 NC_016856.1 periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides; gamma-glutamyltranspeptidase periplasmic precursor 3735902 ggt 588858004376 ggt Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S gamma-glutamyltranspeptidase periplasmic precursor YP_005239760.1 3734160 R 588858 CDS YP_005239761.1 378452401 3735927..3736031 1 NC_016856.1 hypothetical protein 3736031 588858004377 STM14_4277 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239761.1 3735927 D 588858 CDS YP_005239762.1 378452402 3736028..3736444 1 NC_016856.1 hypothetical protein 3736444 yhhA 588858004378 yhhA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239762.1 3736028 D 588858 CDS YP_005239763.1 378452403 complement(3736457..3737197) 1 NC_016856.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; glycerophosphodiester phosphodiesterase 3737197 ugpQ 588858004379 ugpQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycerophosphodiester phosphodiesterase YP_005239763.1 3736457 R 588858 CDS YP_005239764.1 378452404 complement(3737194..3738264) 1 NC_016856.1 part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit 3738264 ugpC 588858004380 ugpC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycerol-3-phosphate transporter ATP-binding subunit YP_005239764.1 3737194 R 588858 CDS YP_005239765.1 378452405 complement(3738266..3739111) 1 NC_016856.1 with UgpABC is involved in uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter membrane protein 3739111 ugpE 588858004381 ugpE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycerol-3-phosphate transporter membrane protein YP_005239765.1 3738266 R 588858 CDS YP_005239766.1 378452406 complement(3739108..3739995) 1 NC_016856.1 with UgpEC is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter permease 3739995 ugpA 588858004382 ugpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycerol-3-phosphate transporter permease YP_005239766.1 3739108 R 588858 CDS YP_005239767.1 378452407 complement(3740059..3741375) 1 NC_016856.1 with UgpACE is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter periplasmic binding protein 3741375 ugpB 588858004383 ugpB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycerol-3-phosphate transporter periplasmic binding protein YP_005239767.1 3740059 R 588858 CDS YP_005239768.1 378452408 complement(3741634..3742002) 1 NC_016856.1 similar to death-on-curing protein of phage P1; death-on-curing protein 3742002 588858004384 STM14_4284 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S death-on-curing protein YP_005239768.1 3741634 R 588858 CDS YP_005239769.1 378452409 complement(3741999..3742226) 1 NC_016856.1 hypothetical protein in livF 5'region (SW:YHHV_SALTY); putative cytoplasmic protein 3742226 yhhV 588858004385 yhhV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239769.1 3741999 R 588858 CDS YP_005239770.1 378452410 complement(3742352..3743065) 1 NC_016856.1 with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 3743065 livF 588858004386 livF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S leucine/isoleucine/valine transporter ATP-binding subunit YP_005239770.1 3742352 R 588858 CDS YP_005239771.1 378452411 complement(3743067..3743834) 1 NC_016856.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 3743834 livG 588858004387 livG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S leucine/isoleucine/valine transporter ATP-binding subunit YP_005239771.1 3743067 R 588858 CDS YP_005239772.1 378452412 complement(3743831..3745108) 1 NC_016856.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit 3745108 livM 588858004388 livM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S leucine/isoleucine/valine transporter permease subunit YP_005239772.1 3743831 R 588858 CDS YP_005239773.1 378452413 complement(3745105..3746031) 1 NC_016856.1 LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; branched-chain amino acid transporter permease subunit LivH 3746031 livH 588858004389 livH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S branched-chain amino acid transporter permease subunit LivH YP_005239773.1 3745105 R 588858 CDS YP_005239774.1 378452414 complement(3746091..3747200) 1 NC_016856.1 leucine-specific binding protein precursor; LS-BP (SW:LIVK_SALTY); ABC superfamily binding protein; high-affinity branched-chain amino acid transporter 3747200 livK 588858004390 livK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S high-affinity branched-chain amino acid transporter YP_005239774.1 3746091 R 588858 CDS YP_005239775.1 378452415 complement(3747318..3747434) 1 NC_016856.1 hypothetical protein 3747434 588858004391 STM14_4291 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239775.1 3747318 R 588858 CDS YP_005239776.1 378452416 3747622..3748005 1 NC_016856.1 putative acetyltransferase 3748005 yhhK 588858004392 yhhK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative acetyltransferase YP_005239776.1 3747622 D 588858 CDS YP_005239777.1 378452417 3747983..3748117 1 NC_016856.1 putative cytoplasmic protein 3748117 588858004393 STM14_4293 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239777.1 3747983 D 588858 CDS YP_005239778.1 378452418 complement(3748200..3749297) 1 NC_016856.1 leu/ile/val/thr-binding protein precursor; LIVT-BP (SW:LIVJ_SALTY); ABC superfamily binding protein; high-affinity branched-chain amino acid transporter 3749297 livJ 588858004394 livJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S high-affinity branched-chain amino acid transporter YP_005239778.1 3748200 R 588858 CDS YP_005239779.1 378452419 complement(3749625..3750479) 1 NC_016856.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 3750479 rpoH 588858004395 rpoH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S RNA polymerase factor sigma-32 YP_005239779.1 3749625 R 588858 CDS YP_005239780.1 378452420 3750462..3750605 1 NC_016856.1 hypothetical protein 3750605 588858004396 STM14_4296 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239780.1 3750462 D 588858 CDS YP_005239781.1 378452421 complement(3750725..3751780) 1 NC_016856.1 putative ABC transporter, membrane protein; cell division protein FtsX 3751780 ftsX 588858004397 ftsX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell division protein FtsX YP_005239781.1 3750725 R 588858 CDS YP_005239782.1 378452422 complement(3751773..3752441) 1 NC_016856.1 putative ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; cell division protein FtsE 3752441 ftsE 588858004398 ftsE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell division protein FtsE YP_005239782.1 3751773 R 588858 CDS YP_005239783.1 378452423 complement(3752444..3753919) 1 NC_016856.1 signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; cell division protein FtsY 3753919 ftsY 588858004399 ftsY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell division protein FtsY YP_005239783.1 3752444 R 588858 CDS YP_005239784.1 378452424 3754045..3754641 1 NC_016856.1 catalyzes the methylation of 16S rRNA at position G966; 16S rRNA m(2)G966-methyltransferase 3754641 yhhF 588858004400 yhhF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 16S rRNA m(2)G966-methyltransferase YP_005239784.1 3754045 D 588858 CDS YP_005239785.1 378452425 3754628..3754900 1 NC_016856.1 hypothetical protein 3754900 yhhL 588858004401 yhhL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239785.1 3754628 D 588858 CDS YP_005239786.1 378452426 complement(3754922..3755293) 1 NC_016856.1 similar to Escherichia coli putative receptor (AAC76492.1); putative inner membrane protein 3755293 yhhM 588858004402 yhhM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239786.1 3754922 R 588858 CDS YP_005239787.1 378452427 3755435..3756061 1 NC_016856.1 similar to Escherichia coli putative enzyme (AAC76493.1); putative inner membrane protein 3756061 yhhN 588858004403 yhhN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239787.1 3755435 D 588858 CDS YP_005239788.1 378452428 3756142..3758340 1 NC_016856.1 P-type ATPase involved in the export of lead, cadmium, zinc and mercury; zinc/cadmium/mercury/lead-transporting ATPase 3758340 zntA 588858004404 zntA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S zinc/cadmium/mercury/lead-transporting ATPase YP_005239788.1 3756142 D 588858 CDS YP_005239789.1 378452429 3758540..3760183 1 NC_016856.1 methyl-accepting chemotaxis citrate transducer (citrate chemoreceptorprotein) (SW:MCPC_SALTY); methyl-accepting transmembrane citrate/phenol chemoreceptor 3760183 tcp 588858004405 tcp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S methyl-accepting transmembrane citrate/phenol chemoreceptor YP_005239789.1 3758540 D 588858 CDS YP_005239790.1 378452430 complement(3760207..3760452) 1 NC_016856.1 Deletion of this protein in E. coli causes cell filamentation, may be a modulator of cell division; cell developmental protein SirA 3760452 yhhP 588858004406 yhhP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell developmental protein SirA YP_005239790.1 3760207 R 588858 CDS YP_005239791.1 378452431 3760622..3761287 1 NC_016856.1 hypothetical protein 3761287 yhhQ 588858004407 yhhQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239791.1 3760622 D 588858 CDS YP_005239792.1 378452432 3761360..3761917 1 NC_016856.1 hypothetical protein 3761917 588858004408 STM14_4308 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239792.1 3761360 D 588858 CDS YP_005239793.1 378452433 complement(3761921..3763138) 1 NC_016856.1 similar to Escherichia coli putative transport (AAC76498.1); MFS family; hypothetical protein 3763138 yhhS 588858004409 yhhS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239793.1 3761921 R 588858 CDS YP_005239794.1 378452434 3763270..3764319 1 NC_016856.1 PerM family; putative permease 3764319 yhhT 588858004410 yhhT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005239794.1 3763270 D 588858 CDS YP_005239795.1 378452435 3764371..3764949 1 NC_016856.1 holo-(acyl carrier protein) synthase 2 3764949 acpT 588858004411 acpT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S holo-(acyl carrier protein) synthase 2 YP_005239795.1 3764371 D 588858 CDS YP_005239796.1 378452436 3765041..3765442 1 NC_016856.1 Inhibits transcription at high concentrations of nickel; nickel responsive regulator 3765442 nikR 588858004412 nikR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nickel responsive regulator YP_005239796.1 3765041 D 588858 CDS YP_005239797.1 378452437 complement(3765532..3766656) 1 NC_016856.1 similar to Escherichia coli putative transporter (AAC76510.1); putative ABC superfamily; ATP-binding/membrane transport protein; putative ABC transport protein 3766656 yhhJ 588858004413 yhhJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transport protein YP_005239797.1 3765532 R 588858 CDS YP_005239798.1 378452438 complement(3766656..3769397) 1 NC_016856.1 similar to Escherichia coli putative ATP-binding component of a transport system; fragment 1 (AAC76511.1); permease component; putative ABC-type multidrug transport system ATPase component 3769397 yhiH 588858004414 yhiH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type multidrug transport system ATPase component YP_005239798.1 3766656 R 588858 CDS YP_005239799.1 378452439 complement(3769394..3770461) 1 NC_016856.1 similar to Escherichia coli putative membrane protein (AAC76512.1); hypothetical protein 3770461 yhiI 588858004415 yhiI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239799.1 3769394 R 588858 CDS YP_005239800.1 378452440 3770553..3770684 1 NC_016856.1 hypothetical protein 3770684 588858004416 STM14_4316 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239800.1 3770553 D 588858 CDS YP_005239801.1 378452441 complement(3770767..3771963) 1 NC_016856.1 hypothetical protein 3771963 yhiN 588858004417 yhiN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239801.1 3770767 R 588858 CDS YP_005239802.1 378452442 3772194..3773690 1 NC_016856.1 similar to Escherichia coli low-affinity phosphate transport (AAC76518.1); PiT family; low-affinity phosphate transporter 3773690 pitA 588858004418 pitA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S low-affinity phosphate transporter YP_005239802.1 3772194 D 588858 CDS YP_005239803.1 378452443 complement(3773830..3774165) 1 NC_016856.1 ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspB 3774165 uspB 588858004419 uspB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S universal stress protein UspB YP_005239803.1 3773830 R 588858 CDS YP_005239804.1 378452444 3774553..3774987 1 NC_016856.1 similar to Escherichia coli universal stress protein; broad regulatory function (AAC76520.1); universal stress protein A 3774987 uspA 588858004420 uspA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S universal stress protein A YP_005239804.1 3774553 D 588858 CDS YP_005239805.1 378452445 3775312..3776784 1 NC_016856.1 member of the POT family of peptide transporters; probable proton-dependent peptide transporter function; inner membrane transporter YhiP 3776784 yhiP 588858004421 yhiP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S inner membrane transporter YhiP YP_005239805.1 3775312 D 588858 CDS YP_005239806.1 378452446 complement(3776876..3777634) 1 NC_016856.1 predicted SAM-dependent methyltransferase; putative methyltransferase 3777634 yhiQ 588858004422 yhiQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative methyltransferase YP_005239806.1 3776876 R 588858 CDS YP_005239807.1 378452447 complement(3777641..3779683) 1 NC_016856.1 oligopeptidase A (SW:OPDA_SALTY); oligopeptidase A 3779683 prlC 588858004423 prlC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S oligopeptidase A YP_005239807.1 3777641 R 588858 CDS YP_005239808.1 378452448 complement(3779865..3781136) 1 NC_016856.1 putative phosphatase 3781136 588858004424 STM14_4324 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phosphatase YP_005239808.1 3779865 R 588858 CDS YP_005239809.1 378452449 3781138..3781305 1 NC_016856.1 hypothetical protein 3781305 588858004425 STM14_4325 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239809.1 3781138 D 588858 CDS YP_005239810.1 378452450 3781347..3782189 1 NC_016856.1 putative cytoplasmic protein 3782189 yhiR 588858004426 yhiR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239810.1 3781347 D 588858 CDS YP_005239811.1 378452451 3782294..3783646 1 NC_016856.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 3783646 gor 588858004427 gor Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutathione reductase YP_005239811.1 3782294 D 588858 CDS YP_005239812.1 378452452 complement(3783693..3784736) 1 NC_016856.1 similar to Escherichia coli periplasmic L-asparaginase II (AAC75994.1); putative L-asparaginase 3784736 588858004428 STM14_4328 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative L-asparaginase YP_005239812.1 3783693 R 588858 CDS YP_005239813.1 378452453 complement(3784795..3786114) 1 NC_016856.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 3786114 588858004429 STM14_4329 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S anaerobic C4-dicarboxylate transporter YP_005239813.1 3784795 R 588858 CDS YP_005239814.1 378452454 complement(3786168..3787013) 1 NC_016856.1 similar to Escherichia coli putative kinase (AAC76399.1); ribokinase family; putative sugar kinase 3787013 588858004430 STM14_4330 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sugar kinase YP_005239814.1 3786168 R 588858 CDS YP_005239815.1 378452455 complement(3787077..3788054) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC76396.1); putative phosphosugar isomerase 3788054 588858004431 STM14_4331 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phosphosugar isomerase YP_005239815.1 3787077 R 588858 CDS YP_005239816.1 378452456 complement(3788230..3788949) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator (AAC76400.1); GntR family; putative regulatory protein 3788949 588858004432 STM14_4332 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005239816.1 3788230 R 588858 CDS YP_005239817.1 378452457 3789092..3789217 1 NC_016856.1 hypothetical protein 3789217 588858004433 STM14_4333 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239817.1 3789092 D 588858 CDS YP_005239818.1 378452458 3789275..3790924 1 NC_016856.1 cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; trehalase 3790924 treF 588858004434 treF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S trehalase YP_005239818.1 3789275 D 588858 CDS YP_005239819.1 378452459 complement(3790937..3792526) 1 NC_016856.1 putative inner membrane protein 3792526 588858004435 STM14_4335 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239819.1 3790937 R 588858 CDS YP_005239820.1 378452460 complement(3792675..3792815) 1 NC_016856.1 hypothetical protein 3792815 588858004436 STM14_4336 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239820.1 3792675 R 588858 CDS YP_005239821.1 378452461 3792807..3793163 1 NC_016856.1 putative phage endolysin 3793163 588858004437 STM14_4337 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phage endolysin YP_005239821.1 3792807 D 588858 CDS YP_005239822.1 378452462 complement(3793169..3793771) 1 NC_016856.1 similar to Escherichia coli putative regulator (AAC76545.1); LuxR/UhpA family; putative transcriptional regulator 3793771 yhjB 588858004438 yhjB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239822.1 3793169 R 588858 CDS YP_005239823.1 378452463 complement(3794036..3794179) 1 NC_016856.1 hypothetical protein 3794179 588858004439 STM14_4339 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239823.1 3794036 R 588858 CDS YP_005239824.1 378452464 3794140..3794265 1 NC_016856.1 hypothetical protein 3794265 588858004440 STM14_4340 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239824.1 3794140 D 588858 CDS YP_005239825.1 378452465 3794402..3795301 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC76546.1); LysR family; putative transcriptional regulator 3795301 yhjC 588858004441 yhjC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239825.1 3794402 D 588858 CDS YP_005239826.1 378452466 3795374..3796402 1 NC_016856.1 putative tRNA-processing ribonuclease 3796402 yhjD 588858004442 yhjD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative tRNA-processing ribonuclease YP_005239826.1 3795374 D 588858 CDS YP_005239827.1 378452467 3796527..3796667 1 NC_016856.1 hypothetical protein 3796667 588858004443 STM14_4343 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239827.1 3796527 D 588858 CDS YP_005239828.1 378452468 3796753..3798075 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC76548.1); MFS family; putative transport protein 3798075 yhjE 588858004444 yhjE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005239828.1 3796753 D 588858 CDS YP_005239829.1 378452469 complement(3798115..3800175) 1 NC_016856.1 putative inner membrane protein 3800175 yhjG 588858004445 yhjG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239829.1 3798115 R 588858 CDS YP_005239830.1 378452470 complement(3800285..3801052) 1 NC_016856.1 in Escherichia coli this protein is involved in flagellar function; EAL domain-containing protein 3801052 yhjH 588858004446 yhjH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S EAL domain-containing protein YP_005239830.1 3800285 R 588858 CDS YP_005239831.1 378452471 complement(3801111..3801227) 1 NC_016856.1 hypothetical protein 3801227 588858004447 STM14_4347 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239831.1 3801111 R 588858 CDS YP_005239832.1 378452472 3801281..3802210 1 NC_016856.1 similar to Escherichia coli ketodeoxygluconokinase (AAC76551.1); ketodeoxygluconokinase 3802210 kdgK 588858004448 kdgK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ketodeoxygluconokinase YP_005239832.1 3801281 D 588858 CDS YP_005239833.1 378452473 complement(3802264..3803751) 1 NC_016856.1 protein YhjJ precursor (SW:YHJJ_SALTY); putative Zn-dependent peptidase 3803751 yhjJ 588858004449 yhjJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative Zn-dependent peptidase YP_005239833.1 3802264 R 588858 CDS YP_005239834.1 378452474 3803739..3803876 1 NC_016856.1 hypothetical protein 3803876 588858004450 STM14_4350 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239834.1 3803739 D 588858 CDS YP_005239835.1 378452475 complement(3803971..3805257) 1 NC_016856.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 3805257 dctA 588858004451 dctA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S C4-dicarboxylate transporter DctA YP_005239835.1 3803971 R 588858 CDS YP_005239836.1 378452476 complement(3805315..3805461) 1 NC_016856.1 hypothetical protein 3805461 588858004452 STM14_4352 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239836.1 3805315 R 588858 CDS YP_005239837.1 378452477 complement(3805415..3807388) 1 NC_016856.1 HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; similar to a putative phosphodiesterase protein from E. coli; putative phosphodiesterase 3807388 yhjK 588858004453 yhjK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phosphodiesterase YP_005239837.1 3805415 R 588858 CDS YP_005239838.1 378452478 complement(3807400..3807591) 1 NC_016856.1 hypothetical protein 3807591 588858004454 STM14_4354 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239838.1 3807400 R 588858 CDS YP_005239839.1 378452479 complement(3807595..3811137) 1 NC_016856.1 cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; cellulose synthase subunit BcsC 3811137 yhjL 588858004455 yhjL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cellulose synthase subunit BcsC YP_005239839.1 3807595 R 588858 CDS YP_005239840.1 378452480 complement(3811119..3812228) 1 NC_016856.1 catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase 3812228 588858004456 STM14_4356 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S endo-1,4-D-glucanase YP_005239840.1 3811119 R 588858 CDS YP_005239841.1 378452481 complement(3812232..3814532) 1 NC_016856.1 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein 3814532 yhjN 588858004457 yhjN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cellulose synthase regulator protein YP_005239841.1 3812232 R 588858 CDS YP_005239842.1 378452482 complement(3814543..3817167) 1 NC_016856.1 polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; cellulose synthase catalytic subunit 3817167 bcsA 588858004458 bcsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cellulose synthase catalytic subunit YP_005239842.1 3814543 R 588858 CDS YP_005239843.1 378452483 complement(3817164..3817916) 1 NC_016856.1 cell division protein 3817916 yhjQ 588858004459 yhjQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell division protein YP_005239843.1 3817164 R 588858 CDS YP_005239844.1 378452484 complement(3817917..3818120) 1 NC_016856.1 putative cytoplasmic protein 3818120 yhjR 588858004460 yhjR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239844.1 3817917 R 588858 CDS YP_005239845.1 378452485 3818231..3818344 1 NC_016856.1 hypothetical protein 3818344 588858004461 STM14_4361 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239845.1 3818231 D 588858 CDS YP_005239846.1 378452486 3818365..3819936 1 NC_016856.1 similar to Escherichia coli putative protease (AAC76561.1); putative cytoplasmic protein 3819936 yhjS 588858004462 yhjS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239846.1 3818365 D 588858 CDS YP_005239847.1 378452487 3819933..3820124 1 NC_016856.1 putative inner membrane protein 3820124 yhjT 588858004463 yhjT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239847.1 3819933 D 588858 CDS YP_005239848.1 378452488 3820121..3821800 1 NC_016856.1 putative inner membrane protein 3821800 yhjU 588858004464 yhjU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239848.1 3820121 D 588858 CDS YP_005239852.1 378452492 3822632..3823930 1 NC_016856.1 similar to Escherichia coli putative transporter protein (AAC76564.1); HAAAP family; putative transport protein 3823930 yhjV 588858004467 yhjV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005239852.1 3822632 D 588858 CDS YP_005239853.1 378452493 complement(3824031..3825044) 1 NC_016856.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit 3825044 dppF 588858004468 dppF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dipeptide transporter ATP-binding subunit YP_005239853.1 3824031 R 588858 CDS YP_005239854.1 378452494 complement(3825041..3826024) 1 NC_016856.1 DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; dipeptide transporter ATP-binding subunit 3826024 dppD 588858004469 dppD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dipeptide transporter ATP-binding subunit YP_005239854.1 3825041 R 588858 CDS YP_005239855.1 378452495 complement(3826035..3826937) 1 NC_016856.1 similar to Escherichia coli dipeptide transport system permease protein 2 (AAC76567.1); ABC superfamily membrane protein; dipeptide transporter 3826937 dppC 588858004470 dppC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dipeptide transporter YP_005239855.1 3826035 R 588858 CDS YP_005239856.1 378452496 complement(3826947..3827966) 1 NC_016856.1 transports peptides consisting of two or three amino acids; dipeptide transporter permease DppB 3827966 dppB 588858004471 dppB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dipeptide transporter permease DppB YP_005239856.1 3826947 R 588858 CDS YP_005239857.1 378452497 complement(3827982..3828101) 1 NC_016856.1 hypothetical protein 3828101 588858004472 STM14_4374 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239857.1 3827982 R 588858 CDS YP_005239858.1 378452498 complement(3828123..3829730) 1 NC_016856.1 similar to Escherichia coli dipeptide transport protein (AAC76569.1); ABC superfamily periplasmic protein; dipeptide transport protein 3829730 dppA 588858004473 dppA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dipeptide transport protein YP_005239858.1 3828123 R 588858 CDS YP_005239859.1 378452499 complement(3830286..3831611) 1 NC_016856.1 similar to Escherichia coli putative permease (AAC75926.1); putative xanthine permease 3831611 588858004474 STM14_4376 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative xanthine permease YP_005239859.1 3830286 R 588858 CDS YP_005239860.1 378452500 complement(3831669..3832793) 1 NC_016856.1 contains putative PQQ enzyme repeat; hypothetical protein 3832793 588858004475 STM14_4377 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239860.1 3831669 R 588858 CDS YP_005239861.1 378452501 complement(3832781..3832954) 1 NC_016856.1 hypothetical protein 3832954 588858004476 STM14_4378 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239861.1 3832781 R 588858 CDS YP_005239862.1 378452502 3832815..3832976 1 NC_016856.1 hypothetical protein 3832976 588858004477 STM14_4379 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239862.1 3832815 D 588858 CDS YP_005239863.1 378452503 3832943..3833950 1 NC_016856.1 similar to Escherichia coli regulator for rbs operon (AAC76776.1); LacI family; putative regulatory protein 3833950 588858004478 STM14_4380 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005239863.1 3832943 D 588858 CDS YP_005239864.1 378452504 complement(3834277..3835968) 1 NC_016856.1 catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; phosphoethanolamine transferase 3835968 yhjW 588858004480 yhjW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoethanolamine transferase YP_005239864.1 3834277 R 588858 CDS YP_005239865.1 378452505 complement(3836186..3836713) 1 NC_016856.1 PFE protein precursor (SW:LPFE_SALTY); long polar fimbrial minor protein 3836713 lpfE 588858004481 lpfE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S long polar fimbrial minor protein YP_005239865.1 3836186 R 588858 CDS YP_005239866.1 378452506 complement(3837806..3840334) 1 NC_016856.1 outer membrane usher protein LpfC precursor (SW:LPFC_SALTY); long polar fimbrial outer membrane usher protein 3840334 lpfC 588858004483 lpfC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S long polar fimbrial outer membrane usher protein YP_005239866.1 3837806 R 588858 CDS YP_005239867.1 378452507 complement(3840357..3841055) 1 NC_016856.1 chaperone protein LpfB precursor (SW:LPFB_SALTY); long polar fimbrial chaperone precursor 3841055 lpfB 588858004484 lpfB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S long polar fimbrial chaperone precursor YP_005239867.1 3840357 R 588858 CDS YP_005239868.1 378452508 complement(3841140..3841676) 1 NC_016856.1 long polar fimbrial protein A precursor (SW:LPFA_SALTY); long polar fimbrial protein A precursor 3841676 lpfA 588858004485 lpfA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S long polar fimbrial protein A precursor YP_005239868.1 3841140 R 588858 CDS YP_005239869.1 378452509 3842019..3842180 1 NC_016856.1 hypothetical protein 3842180 588858004486 STM14_4388 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239869.1 3842019 D 588858 CDS YP_005239870.1 378452510 complement(3842182..3842886) 1 NC_016856.1 similar to Escherichia coli putative lipase (AAC76572.1); putative lipase 3842886 yhjY 588858004487 yhjY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative lipase YP_005239870.1 3842182 R 588858 CDS YP_005239871.1 378452511 3843043..3843624 1 NC_016856.1 constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine; 3-methyladenine DNA glycosylase 3843624 tag 588858004488 tag Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-methyladenine DNA glycosylase YP_005239871.1 3843043 D 588858 CDS YP_005239872.1 378452512 3843602..3844042 1 NC_016856.1 hypothetical protein 3844042 yiaC 588858004489 yiaC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239872.1 3843602 D 588858 CDS YP_005239873.1 378452513 complement(3844011..3846344) 1 NC_016856.1 similar to Escherichia coli biotin sulfoxide reductase (AAC76575.1); biotin sulfoxide reductase 3846344 bisC 588858004490 bisC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S biotin sulfoxide reductase YP_005239873.1 3844011 R 588858 CDS YP_005239874.1 378452514 3846344..3846445 1 NC_016856.1 hypothetical protein 3846445 588858004491 STM14_4393 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239874.1 3846344 D 588858 CDS YP_005239875.1 378452515 3846497..3847159 1 NC_016856.1 similar to Escherichia coli putative outer membrane protein (AAC76576.1); putative outer membrane lipoprotein 3847159 yiaD 588858004492 yiaD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005239875.1 3846497 D 588858 CDS YP_005239876.1 378452516 complement(3847245..3847379) 1 NC_016856.1 hypothetical protein 3847379 588858004493 STM14_4395 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239876.1 3847245 R 588858 CDS YP_005239877.1 378452517 3847378..3848352 1 NC_016856.1 Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 3848352 yiaE 588858004494 yiaE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-hydroxyacid dehydrogenase YP_005239877.1 3847378 D 588858 CDS YP_005239878.1 378452518 complement(3848402..3849112) 1 NC_016856.1 putative outer membrane lipoprotein 3849112 yiaF 588858004495 yiaF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005239878.1 3848402 R 588858 CDS YP_005239879.1 378452519 3849551..3849841 1 NC_016856.1 putative transcriptional regulator 3849841 yiaG 588858004496 yiaG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239879.1 3849551 D 588858 CDS YP_005239880.1 378452520 3850130..3850342 1 NC_016856.1 cold shock protein CspA (SW:CSPA_SALTY); 7.4 kDa; transcriptional activator of hns; major cold shock protein 3850342 cspA 588858004497 cspA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S major cold shock protein YP_005239880.1 3850130 D 588858 CDS YP_005239881.1 378452521 3850516..3851055 1 NC_016856.1 hypothetical protein 3851055 588858004498 STM14_4400 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239881.1 3850516 D 588858 CDS YP_005239882.1 378452522 complement(3851427..3851912) 1 NC_016856.1 putative acetyltransferase 3851912 588858004499 STM14_4401 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative acetyltransferase YP_005239882.1 3851427 R 588858 CDS YP_005239883.1 378452523 complement(3851900..3852187) 1 NC_016856.1 putative cytoplasmic protein 3852187 588858004500 STM14_4402 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239883.1 3851900 R 588858 CDS YP_005239884.1 378452524 complement(3852193..3852324) 1 NC_016856.1 hypothetical protein 3852324 588858004501 STM14_4403 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239884.1 3852193 R 588858 CDS YP_005239885.1 378452525 complement(3852365..3852832) 1 NC_016856.1 putative acetyltransferase 3852832 588858004502 STM14_4404 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative acetyltransferase YP_005239885.1 3852365 R 588858 CDS YP_005239886.1 378452526 complement(3853461..3855530) 1 NC_016856.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 3855530 glyS 588858004504 glyS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycyl-tRNA synthetase subunit beta YP_005239886.1 3853461 R 588858 CDS YP_005239887.1 378452527 complement(3855540..3856451) 1 NC_016856.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 3856451 glyQ 588858004505 glyQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycyl-tRNA synthetase subunit alpha YP_005239887.1 3855540 R 588858 CDS YP_005239888.1 378452528 3856473..3856610 1 NC_016856.1 hypothetical protein 3856610 588858004506 STM14_4408 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239888.1 3856473 D 588858 CDS YP_005239889.1 378452529 complement(3856590..3856892) 1 NC_016856.1 putative outer membrane lipoprotein 3856892 588858004507 STM14_4409 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005239889.1 3856590 R 588858 CDS YP_005239890.1 378452530 complement(3856798..3857019) 1 NC_016856.1 hypothetical protein 3857019 588858004508 STM14_4410 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239890.1 3856798 R 588858 CDS YP_005239891.1 378452531 3857058..3858053 1 NC_016856.1 putative inner membrane protein 3858053 yiaH 588858004509 yiaH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239891.1 3857058 D 588858 CDS YP_005239892.1 378452532 complement(3858076..3858429) 1 NC_016856.1 putative inner membrane protein 3858429 yiaB 588858004510 yiaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239892.1 3858076 R 588858 CDS YP_005239893.1 378452533 complement(3858604..3860058) 1 NC_016856.1 similar to Escherichia coli xylulokinase (AAC76588.1); xylulokinase 3860058 xylB 588858004511 xylB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S xylulokinase YP_005239893.1 3858604 R 588858 CDS YP_005239894.1 378452534 complement(3860158..3861480) 1 NC_016856.1 catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 3861480 xylA 588858004512 xylA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S xylose isomerase YP_005239894.1 3860158 R 588858 CDS YP_005239895.1 378452535 3861460..3861693 1 NC_016856.1 hypothetical protein 3861693 588858004513 STM14_4415 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239895.1 3861460 D 588858 CDS YP_005239896.1 378452536 complement(3861562..3861738) 1 NC_016856.1 hypothetical protein 3861738 588858004514 STM14_4416 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239896.1 3861562 R 588858 CDS YP_005239897.1 378452537 3861843..3863021 1 NC_016856.1 similar to Escherichia coli putative regulator of xyl operon (AAC76593.1); AraC/XylS family; xylose operon regulatory protein 3863021 xylR 588858004515 xylR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S xylose operon regulatory protein YP_005239897.1 3861843 D 588858 CDS YP_005239898.1 378452538 complement(3863082..3863906) 1 NC_016856.1 similar to Escherichia coli putative ATP-binding protein (AAC76594.1); hypothetical protein 3863906 bax 588858004516 bax Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239898.1 3863082 R 588858 CDS YP_005239899.1 378452539 3863890..3864222 1 NC_016856.1 hypothetical protein 3864222 588858004517 STM14_4419 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239899.1 3863890 D 588858 CDS YP_005239900.1 378452540 3864222..3866249 1 NC_016856.1 periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds; periplasmic alpha-amylase 3866249 malS 588858004518 malS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S periplasmic alpha-amylase YP_005239900.1 3864222 D 588858 CDS YP_005239901.1 378452541 3866423..3867673 1 NC_016856.1 transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase 3867673 avtA 588858004519 avtA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S valine--pyruvate transaminase YP_005239901.1 3866423 D 588858 CDS YP_005239902.1 378452542 complement(3867710..3868183) 1 NC_016856.1 putative oxidoreductase 3868183 ysaA 588858004520 ysaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative oxidoreductase YP_005239902.1 3867710 R 588858 CDS YP_005239903.1 378452543 complement(3868300..3869100) 1 NC_016856.1 similar to Escherichia coli putative regulator (AAC76598.1); IclR family; transcriptional repressor 3869100 yiaJ 588858004521 yiaJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional repressor YP_005239903.1 3868300 R 588858 CDS YP_005239904.1 378452544 complement(3869165..3869311) 1 NC_016856.1 hypothetical protein 3869311 588858004522 STM14_4424 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239904.1 3869165 R 588858 CDS YP_005239905.1 378452545 3869330..3870328 1 NC_016856.1 NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; 2,3-diketo-L-gulonate reductase 3870328 yiaK 588858004523 yiaK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2,3-diketo-L-gulonate reductase YP_005239905.1 3869330 D 588858 CDS YP_005239906.1 378452546 3870340..3870804 1 NC_016856.1 similar to Escherichia coli putative lipase (AAC76600.1); putative cytoplasmic protein 3870804 yiaL 588858004524 yiaL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239906.1 3870340 D 588858 CDS YP_005239907.1 378452547 3870828..3871760 1 NC_016856.1 similar to CheA; putative chemotaxis protein 3871760 588858004525 STM14_4427 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative chemotaxis protein YP_005239907.1 3870828 D 588858 CDS YP_005239908.1 378452548 3871899..3872372 1 NC_016856.1 membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO; 2,3-diketo-L-gulonate TRAP transporter small permease 3872372 yiaM 588858004526 yiaM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2,3-diketo-L-gulonate TRAP transporter small permease YP_005239908.1 3871899 D 588858 CDS YP_005239909.1 378452549 3872375..3873652 1 NC_016856.1 similar to Escherichia coli putative membrane protein (AAC76602.1); DedA family; hypothetical protein 3873652 yiaN 588858004527 yiaN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239909.1 3872375 D 588858 CDS YP_005239910.1 378452550 3873664..3874650 1 NC_016856.1 similar to Escherichia coli putative solute-binding transport protein (AAC76603.1); putative periplasmic dicarboxylate-binding protein 3874650 yiaO 588858004528 yiaO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative periplasmic dicarboxylate-binding protein YP_005239910.1 3873664 D 588858 CDS YP_005239911.1 378452551 3874654..3876150 1 NC_016856.1 similar to Escherichia coli L-xylulose kinase (AAC76604.1); cryptic; L-xylulose kinase 3876150 lyxK 588858004529 lyxK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-xylulose kinase YP_005239911.1 3874654 D 588858 CDS YP_005239912.1 378452552 3876147..3876809 1 NC_016856.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate; 3-keto-L-gulonate-6-phosphate decarboxylase 3876809 sgbH 588858004530 sgbH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-keto-L-gulonate-6-phosphate decarboxylase YP_005239912.1 3876147 D 588858 CDS YP_005239913.1 378452553 3876802..3877662 1 NC_016856.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; putative L-xylulose 5-phosphate 3-epimerase 3877662 sgbU 588858004531 sgbU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative L-xylulose 5-phosphate 3-epimerase YP_005239913.1 3876802 D 588858 CDS YP_005239914.1 378452554 3877656..3878351 1 NC_016856.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 3878351 sgbE 588858004532 sgbE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-ribulose-5-phosphate 4-epimerase YP_005239914.1 3877656 D 588858 CDS YP_005239915.1 378452555 complement(3878512..3879327) 1 NC_016856.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC76936.1); AraC family; helix-turn-helix; putative regulatory protein 3879327 588858004533 STM14_4435 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005239915.1 3878512 R 588858 CDS YP_005239916.1 378452556 3879591..3881546 1 NC_016856.1 putative cytoplasmic protein 3881546 588858004534 STM14_4436 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239916.1 3879591 D 588858 CDS YP_005239917.1 378452557 3881551..3881694 1 NC_016856.1 hypothetical protein 3881694 588858004535 STM14_4437 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239917.1 3881551 D 588858 CDS YP_005239918.1 378452558 complement(3881664..3883202) 1 NC_016856.1 similar to Escherichia coli aldehyde dehydrogenase B; lactaldehyde dehydrogenase (AAC76612.1); aldehyde dehydrogenase B 3883202 aldB 588858004536 aldB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aldehyde dehydrogenase B YP_005239918.1 3881664 R 588858 CDS YP_005239919.1 378452559 3883371..3884252 1 NC_016856.1 similar to Escherichia coli possible NagC-like transcriptional regulator (AAC73497.1); putative transcriptional regulator 3884252 588858004537 STM14_4439 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239919.1 3883371 D 588858 CDS YP_005239920.1 378452560 complement(3884537..3886387) 1 NC_016856.1 similar to Escherichia coli selenocysteinyl-tRNA-specific translation factor (AAC76614.1); selenocysteinyl-tRNA-specific translation factor 3886387 selB 588858004538 selB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S selenocysteinyl-tRNA-specific translation factor YP_005239920.1 3884537 R 588858 CDS YP_005239921.1 378452561 complement(3886384..3887775) 1 NC_016856.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 3887775 selA 588858004539 selA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S selenocysteine synthase YP_005239921.1 3886384 R 588858 CDS YP_005239922.1 378452562 complement(3887874..3888482) 1 NC_016856.1 similar to Escherichia coli putative S-transferase (AAC76616.1); glutathione S-transferase 3888482 yibF 588858004540 yibF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutathione S-transferase YP_005239922.1 3887874 R 588858 CDS YP_005239923.1 378452563 3888958..3890874 1 NC_016856.1 similar to Escherichia coli PTS system; mannitol-specific enzyme IIABC components (AAC76623.1); PTS family; mannitol-specific enzyme IIABC component 3890874 mtlA 588858004541 mtlA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S mannitol-specific enzyme IIABC component YP_005239923.1 3888958 D 588858 CDS YP_005239924.1 378452564 3891080..3892243 1 NC_016856.1 similar to Escherichia coli mannitol-1-phosphate dehydrogenase (AAC76624.1); mannitol-1-phosphate 5-dehydrogenase 3892243 mtlD 588858004542 mtlD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S mannitol-1-phosphate 5-dehydrogenase YP_005239924.1 3891080 D 588858 CDS YP_005239925.1 378452565 3892240..3892830 1 NC_016856.1 Acts as a repressor of the mtlAD operon; mannitol repressor protein 3892830 mtlR 588858004543 mtlR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S mannitol repressor protein YP_005239925.1 3892240 D 588858 CDS YP_005239926.1 378452566 complement(3892840..3893049) 1 NC_016856.1 putative cytoplasmic protein 3893049 588858004544 STM14_4446 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239926.1 3892840 R 588858 CDS YP_005239927.1 378452567 3893340..3893702 1 NC_016856.1 hypothetical protein 3893702 yibL 588858004545 yibL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239927.1 3893340 D 588858 CDS YP_005239928.1 378452568 3893735..3893932 1 NC_016856.1 hypothetical protein 3893932 588858004546 STM14_4448 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239928.1 3893735 D 588858 CDS YP_005239929.1 378452569 3894193..3894876 1 NC_016856.1 putative inner membrane lipoprotein 3894876 588858004547 STM14_4449 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane lipoprotein YP_005239929.1 3894193 D 588858 CDS YP_005239930.1 378452570 3894920..3899305 1 NC_016856.1 similar to Escherichia coli putative membrane protein (AAC74454.1); putative inner membrane protein 3899305 588858004548 STM14_4450 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239930.1 3894920 D 588858 CDS YP_005239931.1 378452571 3899604..3901259 1 NC_016856.1 similar to Escherichia coli L-lactate permease (AAC76627.1); L-lactate permease 3901259 lldP 588858004549 lldP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-lactate permease YP_005239931.1 3899604 D 588858 CDS YP_005239932.1 378452572 3901256..3902032 1 NC_016856.1 represses the lctPRD operon; DNA-binding transcriptional repressor LldR 3902032 lldR 588858004550 lldR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional repressor LldR YP_005239932.1 3901256 D 588858 CDS YP_005239933.1 378452573 3902029..3903219 1 NC_016856.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 3903219 lldD 588858004551 lldD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-lactate dehydrogenase YP_005239933.1 3902029 D 588858 CDS YP_005239934.1 378452574 3903283..3903756 1 NC_016856.1 member of the SPOUT superfamily of RNA methyltransferases; no methyltransferase activity observed with certain tRNA substrates; putative tRNA/rRNA methyltransferase YibK 3903756 yibK 588858004552 yibK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative tRNA/rRNA methyltransferase YibK YP_005239934.1 3903283 D 588858 CDS YP_005239935.1 378452575 complement(3903824..3904828) 1 NC_016856.1 similar to Escherichia coli L-idonate transcriptional regulator (AAC77221.1); putative transcriptional regulator 3904828 588858004553 STM14_4455 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239935.1 3903824 R 588858 CDS YP_005239936.1 378452576 3904878..3905129 1 NC_016856.1 hypothetical protein 3905129 588858004554 STM14_4456 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239936.1 3904878 D 588858 CDS YP_005239937.1 378452577 3905147..3906343 1 NC_016856.1 similar to Escherichia coli starvation-sensing protein (AAC74653.1); muconate lactonizing enzyme family; putative mandelate racemase 3906343 588858004555 STM14_4457 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative mandelate racemase YP_005239937.1 3905147 D 588858 CDS YP_005239938.1 378452578 3906417..3907727 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC75831.1); putative permease 3907727 588858004556 STM14_4458 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005239938.1 3906417 D 588858 CDS YP_005239939.1 378452579 complement(3907810..3908631) 1 NC_016856.1 catalyzes the O-acetylation of serine; serine acetyltransferase 3908631 cysE 588858004557 cysE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S serine acetyltransferase YP_005239939.1 3907810 R 588858 CDS YP_005239940.1 378452580 complement(3908709..3909728) 1 NC_016856.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 3909728 gpsA 588858004558 gpsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_005239940.1 3908709 R 588858 CDS YP_005239941.1 378452581 complement(3909728..3910195) 1 NC_016856.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 3910195 secB 588858004559 secB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S preprotein translocase subunit SecB YP_005239941.1 3909728 R 588858 CDS YP_005239942.1 378452582 complement(3910239..3910490) 1 NC_016856.1 similar to Escherichia coli glutaredoxin 3 (AAC76634.1); glutaredoxin 3 3910490 grxC 588858004560 grxC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutaredoxin 3 YP_005239942.1 3910239 R 588858 CDS YP_005239943.1 378452583 complement(3910577..3911008) 1 NC_016856.1 putative rhodanese-like sulfurtransferase 3911008 yibN 588858004561 yibN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative rhodanese-like sulfurtransferase YP_005239943.1 3910577 R 588858 CDS YP_005239944.1 378452584 3911256..3912800 1 NC_016856.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 3912800 pmgI 588858004562 pmgI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoglyceromutase YP_005239944.1 3911256 D 588858 CDS YP_005239945.1 378452585 3912810..3914093 1 NC_016856.1 similar to Escherichia coli putative membrane protein (AAC76637.1); hypothetical protein 3914093 yibP 588858004563 yibP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239945.1 3912810 D 588858 CDS YP_005239946.1 378452586 3914097..3915059 1 NC_016856.1 hypothetical protein 3915059 yigQ 588858004564 yigQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239946.1 3914097 D 588858 CDS YP_005239947.1 378452587 complement(3915046..3916080) 1 NC_016856.1 similar to Escherichia coli putative regulator (AAC76639.1); glycosyl transferase family protein 3916080 yibD 588858004565 yibD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycosyl transferase family protein YP_005239947.1 3915046 R 588858 CDS YP_005239948.1 378452588 complement(3916321..3916461) 1 NC_016856.1 putative inner membrane protein 3916461 588858004566 STM14_4468 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239948.1 3916321 R 588858 CDS YP_005239949.1 378452589 complement(3916574..3917599) 1 NC_016856.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 3917599 tdh 588858004567 tdh Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-threonine 3-dehydrogenase YP_005239949.1 3916574 R 588858 CDS YP_005239950.1 378452590 complement(3917609..3918805) 1 NC_016856.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 3918805 kbl 588858004568 kbl Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-amino-3-ketobutyrate coenzyme A ligase YP_005239950.1 3917609 R 588858 CDS YP_005239951.1 378452591 3919008..3919940 1 NC_016856.1 catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase 3919940 rfaD 588858004569 rfaD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ADP-L-glycero-D-manno-heptose-6-epimerase YP_005239951.1 3919008 D 588858 CDS YP_005239952.1 378452592 3919943..3920989 1 NC_016856.1 catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose--LPS heptosyltransferase 3920989 rfaF 588858004570 rfaF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ADP-heptose--LPS heptosyltransferase YP_005239952.1 3919943 D 588858 CDS YP_005239953.1 378452593 3920989..3921942 1 NC_016856.1 lipopolysaccharide heptosyltransferase-1 (SW:RFAC_SALTY); ADP-heptose--LPS heptosyltransferase 3921942 rfaC 588858004571 rfaC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ADP-heptose--LPS heptosyltransferase YP_005239953.1 3920989 D 588858 CDS YP_005239954.1 378452594 3921982..3923196 1 NC_016856.1 O-antigen ligase (SW:RFAL_SALTY); O-antigen ligase 3923196 rfaL 588858004572 rfaL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S O-antigen ligase YP_005239954.1 3921982 D 588858 CDS YP_005239955.1 378452595 complement(3923253..3924398) 1 NC_016856.1 lipopolysaccharide 1,2-N-acetylglucosaminetransferase (SW:RFAK_SALTY); lipopolysaccharide core biosynthetic protein; putative hexose transferase 3924398 rfaK 588858004573 rfaK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hexose transferase YP_005239955.1 3923253 R 588858 CDS YP_005239956.1 378452596 complement(3924499..3925308) 1 NC_016856.1 lipopolysaccharide core biosynthetic protein RfaZ (SW:RFAZ_SALTY); lipopolysaccharide core biosynthesis protein 3925308 rfaZ 588858004574 rfaZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipopolysaccharide core biosynthesis protein YP_005239956.1 3924499 R 588858 CDS YP_005239957.1 378452597 complement(3925458..3926156) 1 NC_016856.1 lipopolysaccharide core biosynthesis protein RfaY (SW:RFAY_SALTY); modification of heptose region of the core; lipopolysaccharide core biosynthesis protein 3926156 rfaY 588858004575 rfaY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipopolysaccharide core biosynthesis protein YP_005239957.1 3925458 R 588858 CDS YP_005239958.1 378452598 complement(3926179..3927189) 1 NC_016856.1 UDP-D-glucose/galactosyl; lipopolysaccharide 1,2-glucosyltransferase (SW:RFAJ_SALTY); lipopolysaccharide glucosyltransferase 3927189 rfaJ 588858004576 rfaJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipopolysaccharide glucosyltransferase YP_005239958.1 3926179 R 588858 CDS YP_005239959.1 378452599 complement(3927207..3928220) 1 NC_016856.1 UDP-D-galactose/glucosyl; lipopolysaccharide 1,3-galactosyltransferase (SW:RFAI_SALTY); lipopolysaccharide-alpha-1, 3-D-galactosyltransferase 3928220 rfaI 588858004577 rfaI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipopolysaccharide-alpha-1, 3-D-galactosyltransferase YP_005239959.1 3927207 R 588858 CDS YP_005239960.1 378452600 complement(3928226..3929305) 1 NC_016856.1 UDP-D-galactose/(glucosyl; lipopolysaccharide 1,6-galactosyltransferase (SW:RFAB_SALTY); UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase 3929305 rfaB 588858004578 rfaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase YP_005239960.1 3928226 R 588858 CDS YP_005239961.1 378452601 complement(3929375..3929608) 1 NC_016856.1 hypothetical 9.0 kDa protein in rfaB-rfaP intergenic region (SW:YIBR_SALTY); putative inner membrane protein 3929608 yibR 588858004579 yibR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239961.1 3929375 R 588858 CDS YP_005239962.1 378452602 complement(3929640..3930437) 1 NC_016856.1 lipopolysaccharide core biosynthetic protein RfaP (SW:RFAP_SALTY); phosphorylation of core heptose; lipopolysaccharide core biosynthetic protein 3930437 rfaP 588858004580 rfaP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipopolysaccharide core biosynthetic protein YP_005239962.1 3929640 R 588858 CDS YP_005239963.1 378452603 complement(3930430..3931554) 1 NC_016856.1 similar to Escherichia coli glucosyltransferase I; lipopolysaccharide core biosynthesis (AAC76655.1); glucosyltransferase I 3931554 rfaG 588858004581 rfaG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucosyltransferase I YP_005239963.1 3930430 R 588858 CDS YP_005239964.1 378452604 complement(3931551..3932585) 1 NC_016856.1 similar to Escherichia coli lipopolysaccharide core biosynthetic protein (AAC76656.1); modification of heptose region of core; lipopolysaccharide core biosynthesis protein 3932585 rfaQ 588858004582 rfaQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipopolysaccharide core biosynthesis protein YP_005239964.1 3931551 R 588858 CDS YP_005239965.1 378452605 complement(3932731..3932850) 1 NC_016856.1 hypothetical protein 3932850 588858004583 STM14_4485 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239965.1 3932731 R 588858 CDS YP_005239966.1 378452606 3933030..3934307 1 NC_016856.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 3934307 kdtA 588858004584 kdtA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-deoxy-D-manno-octulosonic-acid transferase YP_005239966.1 3933030 D 588858 CDS YP_005239967.1 378452607 3934316..3934795 1 NC_016856.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 3934795 coaD 588858004585 coaD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphopantetheine adenylyltransferase YP_005239967.1 3934316 D 588858 CDS YP_005239968.1 378452608 complement(3934823..3935632) 1 NC_016856.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 3935632 mutM 588858004586 mutM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S formamidopyrimidine-DNA glycosylase YP_005239968.1 3934823 R 588858 CDS YP_005239969.1 378452609 complement(3935730..3935897) 1 NC_016856.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 3935897 rpmG 588858004587 rpmG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L33 YP_005239969.1 3935730 R 588858 CDS YP_005239970.1 378452610 complement(3935918..3936154) 1 NC_016856.1 required for 70S ribosome assembly; 50S ribosomal protein L28 3936154 rpmB 588858004588 rpmB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L28 YP_005239970.1 3935918 R 588858 CDS YP_005239971.1 378452611 complement(3936372..3937211) 1 NC_016856.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 3937211 radC 588858004589 radC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA repair protein RadC YP_005239971.1 3936372 R 588858 CDS YP_005239972.1 378452612 3937213..3938433 1 NC_016856.1 Catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine.; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 3938433 dfp 588858004590 dfp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_005239972.1 3937213 D 588858 CDS YP_005239973.1 378452613 3938414..3938869 1 NC_016856.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 3938869 dut 588858004591 dut Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S deoxyuridine 5'-triphosphate nucleotidohydrolase YP_005239973.1 3938414 D 588858 CDS YP_005239974.1 378452614 3938977..3939573 1 NC_016856.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 3939573 slmA 588858004592 slmA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nucleoid occlusion protein YP_005239974.1 3938977 D 588858 CDS YP_005239975.1 378452615 complement(3939651..3940292) 1 NC_016856.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 3940292 pyrE 588858004593 pyrE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S orotate phosphoribosyltransferase YP_005239975.1 3939651 R 588858 CDS YP_005239976.1 378452616 complement(3940371..3941087) 1 NC_016856.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 3941087 rph 588858004594 rph Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonuclease PH YP_005239976.1 3940371 R 588858 CDS YP_005239977.1 378452617 3941019..3941198 1 NC_016856.1 hypothetical protein 3941198 588858004595 STM14_4497 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239977.1 3941019 D 588858 CDS YP_005239978.1 378452618 3941213..3942076 1 NC_016856.1 similar to Escherichia coli putative alpha helix protein (AAC76668.1); hypothetical protein 3942076 yicC 588858004596 yicC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239978.1 3941213 D 588858 CDS YP_005239979.1 378452619 complement(3942126..3943028) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73730.1); LysR family; putative transcriptional regulator 3943028 588858004597 STM14_4499 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005239979.1 3942126 R 588858 CDS YP_005239980.1 378452620 3943102..3943983 1 NC_016856.1 similar to glyoxylases; putative Zn-dependent hydrolase 3943983 588858004598 STM14_4500 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative Zn-dependent hydrolase YP_005239980.1 3943102 D 588858 CDS YP_005239981.1 378452621 3943928..3944110 1 NC_016856.1 hypothetical protein 3944110 588858004599 STM14_4501 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239981.1 3943928 D 588858 CDS YP_005239982.1 378452622 3944234..3944851 1 NC_016856.1 putative inner membrane protein 3944851 588858004600 STM14_4502 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239982.1 3944234 D 588858 CDS YP_005239983.1 378452623 complement(3944848..3946533) 1 NC_016856.1 this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB 3946533 ligB 588858004601 ligB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NAD-dependent DNA ligase LigB YP_005239983.1 3944848 R 588858 CDS YP_005239984.1 378452624 3946552..3946725 1 NC_016856.1 hypothetical protein 3946725 588858004602 STM14_4504 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239984.1 3946552 D 588858 CDS YP_005239985.1 378452625 3946790..3947413 1 NC_016856.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 3947413 gmk 588858004603 gmk Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S guanylate kinase YP_005239985.1 3946790 D 588858 CDS YP_005239986.1 378452626 3947468..3947743 1 NC_016856.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3947743 rpoZ 588858004604 rpoZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-directed RNA polymerase subunit omega YP_005239986.1 3947468 D 588858 CDS YP_005239987.1 378452627 3947762..3949873 1 NC_016856.1 similar to Escherichia coli (p)ppGpp synthetase II; also guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (AAC76674.1); bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3949873 spoT 588858004605 spoT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_005239987.1 3947762 D 588858 CDS YP_005239988.1 378452628 3949878..3950567 1 NC_016856.1 specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 3950567 spoU 588858004606 spoU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tRNA guanosine-2'-O-methyltransferase YP_005239988.1 3949878 D 588858 CDS YP_005239989.1 378452629 3950573..3952654 1 NC_016856.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 3952654 recG 588858004607 recG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-dependent DNA helicase RecG YP_005239989.1 3950573 D 588858 CDS YP_005239990.1 378452630 complement(3952657..3953508) 1 NC_016856.1 putative cytoplasmic protein 3953508 588858004608 STM14_4510 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239990.1 3952657 R 588858 CDS YP_005239991.1 378452631 complement(3953511..3954716) 1 NC_016856.1 similar to Escherichia coli glutamate transport (AAC76677.1); GltS family; glutamate transport protein 3954716 gltS 588858004609 gltS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamate transport protein YP_005239991.1 3953511 R 588858 CDS YP_005239992.1 378452632 complement(3954806..3954916) 1 NC_016856.1 hypothetical protein 3954916 588858004610 STM14_4512 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239992.1 3954806 R 588858 CDS YP_005239993.1 378452633 3954944..3956335 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC76678.1); NCS2 family; putative purine/xanthine transport protein 3956335 yicE 588858004611 yicE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative purine/xanthine transport protein YP_005239993.1 3954944 D 588858 CDS YP_005239994.1 378452634 3956456..3958165 1 NC_016856.1 putative inner membrane protein 3958165 yicH 588858004612 yicH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005239994.1 3956456 D 588858 CDS YP_005239995.1 378452635 complement(3958268..3960586) 1 NC_016856.1 catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides; alpha-xylosidase 3960586 yicI 588858004613 yicI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S alpha-xylosidase YP_005239995.1 3958268 R 588858 CDS YP_005239996.1 378452636 complement(3960598..3961980) 1 NC_016856.1 may be involved in the transport of galactosides-pentoses-hexuronides; putative transporter 3961980 yicJ 588858004614 yicJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transporter YP_005239996.1 3960598 R 588858 CDS YP_005239997.1 378452637 3962472..3962597 1 NC_016856.1 hypothetical protein 3962597 588858004616 STM14_4518 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239997.1 3962472 D 588858 CDS YP_005239998.1 378452638 complement(3962679..3963023) 1 NC_016856.1 putative cytoplasmic protein 3963023 588858004617 STM14_4519 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005239998.1 3962679 R 588858 CDS YP_005239999.1 378452639 3963213..3963356 1 NC_016856.1 hypothetical protein 3963356 588858004618 STM14_4520 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005239999.1 3963213 D 588858 CDS YP_005240000.1 378452640 complement(3963387..3963497) 1 NC_016856.1 hypothetical protein 3963497 588858004619 STM14_4521 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240000.1 3963387 R 588858 CDS YP_005240001.1 378452641 3963701..3964891 1 NC_016856.1 similar to putative ATP binding protein SugR (gi|4324607); ATP-binding protein 3964891 sugR 588858004620 sugR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-binding protein YP_005240001.1 3963701 D 588858 CDS YP_005240002.1 378452642 3964888..3965238 1 NC_016856.1 similar to putative ATP binding protein SugR (gi|4324607); putative cytoplasmic protein 3965238 588858004621 STM14_4523 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240002.1 3964888 D 588858 CDS YP_005240003.1 378452643 3965425..3966462 1 NC_016856.1 RhuM (gi|4324608); putative cytoplasmic protein 3966462 rhuM 588858004622 rhuM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240003.1 3965425 D 588858 CDS YP_005240004.1 378452644 3967761..3968378 1 NC_016856.1 RmbA (gi|4324609); putative cytoplasmic protein 3968378 rmbA 588858004624 rmbA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240004.1 3967761 D 588858 CDS YP_005240005.1 378452645 3968453..3971320 1 NC_016856.1 MisL (gi|4324610); similar to AIDA-I autotransporter; member of IgA1 family of proteases; outer membrane protein; putative autotransporter 3971320 misL 588858004625 misL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative autotransporter YP_005240005.1 3968453 D 588858 CDS YP_005240006.1 378452646 complement(3971415..3971879) 1 NC_016856.1 FidL (gi|4324611); putative inner membrane protein 3971879 fidL 588858004626 fidL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240006.1 3971415 R 588858 CDS YP_005240007.1 378452647 complement(3971890..3972678) 1 NC_016856.1 putative transcriptional regulator MarT (gi|4324612); similar to Vibrio cholerae ToxR; putative transcriptional regulator 3972678 marT 588858004627 marT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005240007.1 3971890 R 588858 CDS YP_005240008.1 378452648 3973351..3973476 1 NC_016856.1 hypothetical protein 3973476 588858004629 STM14_4531 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240008.1 3973351 D 588858 CDS YP_005240009.1 378452649 3973531..3974211 1 NC_016856.1 SlsA (gi|4324613); similar to STM0950; putative inner membrane protein 3974211 slsA 588858004630 slsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240009.1 3973531 D 588858 CDS YP_005240010.1 378452650 complement(3974252..3974359) 1 NC_016856.1 hypothetical protein 3974359 588858004631 STM14_4533 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240010.1 3974252 R 588858 CDS YP_005240011.1 378452651 complement(3974440..3974919) 1 NC_016856.1 CigR (gi|4324614); putative inner membrane protein 3974919 cigR 588858004632 cigR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240011.1 3974440 R 588858 CDS YP_005240012.1 378452652 3974935..3975075 1 NC_016856.1 hypothetical protein 3975075 588858004633 STM14_4535 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240012.1 3974935 D 588858 CDS YP_005240013.1 378452653 complement(3975234..3977960) 1 NC_016856.1 Mg(2+) transport ATPase, P-type 2 (SW:ATMB_SALTY); cotranscribed with mgtC; Mg2+ transporter 3977960 mgtB 588858004634 mgtB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Mg2+ transporter YP_005240013.1 3975234 R 588858 CDS YP_005240014.1 378452654 3978059..3978172 1 NC_016856.1 hypothetical protein 3978172 588858004635 STM14_4537 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240014.1 3978059 D 588858 CDS YP_005240015.1 378452655 complement(3978180..3978875) 1 NC_016856.1 Mg(2+) transport ATPase protein C (SW:ATMC_SALTY); reqired for intracmacrophage survival and growth in low calcium; cotranscribed with mgtB and transcriptionally controlled by PhoP/PhoQ system; Mg2+ transport protein 3978875 mgtC 588858004636 mgtC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Mg2+ transport protein YP_005240015.1 3978180 R 588858 CDS YP_005240016.1 378452656 3979055..3979171 1 NC_016856.1 hypothetical protein 3979171 588858004637 STM14_4539 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240016.1 3979055 D 588858 CDS YP_005240017.1 378452657 complement(3979172..3979297) 1 NC_016856.1 hypothetical protein 3979297 588858004638 STM14_4540 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240017.1 3979172 R 588858 CDS YP_005240018.1 378452658 3979384..3980286 1 NC_016856.1 hypothetical protein in selC 3'region (SW:YICL_SALTY); integral membrane protein; putative permease 3980286 yicL 588858004639 yicL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005240018.1 3979384 D 588858 CDS YP_005240019.1 378452659 complement(3980329..3981270) 1 NC_016856.1 putative cytoplasmic protein 3981270 588858004640 STM14_4542 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240019.1 3980329 R 588858 CDS YP_005240020.1 378452660 complement(3981506..3982249) 1 NC_016856.1 putative cytoplasmic protein 3982249 588858004641 STM14_4543 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240020.1 3981506 R 588858 CDS YP_005240021.1 378452661 complement(3982236..3983345) 1 NC_016856.1 L-seryl-tRNA selenium transferase; putative selenocysteine synthase 3983345 588858004642 STM14_4544 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative selenocysteine synthase YP_005240021.1 3982236 R 588858 CDS YP_005240022.1 378452662 complement(3983349..3984206) 1 NC_016856.1 similar to Escherichia coli PTS enzyme IID; mannose-specific (AAC74889.1); putative PTS system transporter subunit 3984206 588858004643 STM14_4545 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative PTS system transporter subunit YP_005240022.1 3983349 R 588858 CDS YP_005240023.1 378452663 complement(3984206..3984955) 1 NC_016856.1 similar to Escherichia coli PTS system N-acetylgalactosamine-specific IIC component 1 (AAC76173.1); putative PTS system transporter subunitC 3984955 588858004644 STM14_4546 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative PTS system transporter subunitC YP_005240023.1 3984206 R 588858 CDS YP_005240024.1 378452664 complement(3985101..3985586) 1 NC_016856.1 similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1); putative PTS system transporter subunitB 3985586 588858004645 STM14_4547 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative PTS system transporter subunitB YP_005240024.1 3985101 R 588858 CDS YP_005240025.1 378452665 complement(3985597..3986022) 1 NC_016856.1 putative PTS system transporter subunitA 3986022 588858004646 STM14_4548 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative PTS system transporter subunitA YP_005240025.1 3985597 R 588858 CDS YP_005240026.1 378452666 3986024..3986146 1 NC_016856.1 hypothetical protein 3986146 588858004647 STM14_4549 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240026.1 3986024 D 588858 CDS YP_005240027.1 378452667 complement(3986241..3989039) 1 NC_016856.1 similar to Escherichia coli psp operon transcriptional activator (AAC74385.1); NtrC family; contains ATPase domain; putative transcriptional regulator 3989039 588858004648 STM14_4550 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005240027.1 3986241 R 588858 CDS YP_005240028.1 378452668 complement(3989051..3989164) 1 NC_016856.1 hypothetical protein 3989164 588858004649 STM14_4551 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240028.1 3989051 R 588858 CDS YP_005240029.1 378452669 3989236..3989529 1 NC_016856.1 putative inner membrane protein 3989529 588858004650 STM14_4552 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240029.1 3989236 D 588858 CDS YP_005240030.1 378452670 3989514..3989657 1 NC_016856.1 hypothetical protein 3989657 588858004651 STM14_4553 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240030.1 3989514 D 588858 CDS YP_005240031.1 378452671 3989635..3991017 1 NC_016856.1 similar to Escherichia coli 6-phospho-beta-glucosidase; cryptic (AAC75758.1); putative glycosyl hydrolase 3991017 588858004652 STM14_4554 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycosyl hydrolase YP_005240031.1 3989635 D 588858 CDS YP_005240032.1 378452672 complement(3991077..3992270) 1 NC_016856.1 experimental results in Escherichia coli suggest that this gene encodes an inosine export protein; member of major facilitator superfamily; MFS; ribonucleoside transporter 3992270 nepI 588858004653 nepI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonucleoside transporter YP_005240032.1 3991077 R 588858 CDS YP_005240033.1 378452673 3992486..3992845 1 NC_016856.1 putative cytoplasmic protein 3992845 588858004654 STM14_4556 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240033.1 3992486 D 588858 CDS YP_005240034.1 378452674 3992829..3993152 1 NC_016856.1 helix-turn-helix; putative DNA-binding protein 3993152 588858004655 STM14_4557 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA-binding protein YP_005240034.1 3992829 D 588858 CDS YP_005240035.1 378452675 complement(3993243..3993512) 1 NC_016856.1 similar to Escherichia coli PTS system protein HPr (AAC75468.1); putative phosphotransferase system HPr protein 3993512 588858004656 STM14_4558 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phosphotransferase system HPr protein YP_005240035.1 3993243 R 588858 CDS YP_005240036.1 378452676 complement(3993522..3994382) 1 NC_016856.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; putative fructose-1,6-bisphosphate aldolase 3994382 gatY_2 588858004657 gatY_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fructose-1,6-bisphosphate aldolase YP_005240036.1 3993522 R 588858 CDS YP_005240037.1 378452677 complement(3994445..3995929) 1 NC_016856.1 similar to Escherichia coli L-fuculokinase (AAC75845.1); pentulose and hexulose; putative sugar kinase 3995929 588858004658 STM14_4560 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sugar kinase YP_005240037.1 3994445 R 588858 CDS YP_005240038.1 378452678 complement(3995922..3997280) 1 NC_016856.1 similar to Escherichia coli PTS system galactitol-specific enzyme IIC (AAC75153.1); putative PTS system galactitol-specific enzyme IIC component 3997280 588858004659 STM14_4561 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative PTS system galactitol-specific enzyme IIC component YP_005240038.1 3995922 R 588858 CDS YP_005240039.1 378452679 complement(3997356..3997643) 1 NC_016856.1 similar to Escherichia coli galactitol-specific enzyme IIB of phosphotransferase system (AAC75154.1); hypothetical protein 3997643 588858004660 STM14_4562 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240039.1 3997356 R 588858 CDS YP_005240040.1 378452680 complement(3997640..3998113) 1 NC_016856.1 similar to Escherichia coli galactitol-specific enzyme IIA of phosphotransferase system (AAC75155.1); phosphotransferase system mannitol/fructose-specific IIA component 3998113 588858004661 STM14_4563 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphotransferase system mannitol/fructose-specific IIA component YP_005240040.1 3997640 R 588858 CDS YP_005240041.1 378452681 complement(3998131..3998874) 1 NC_016856.1 similar to Escherichia coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1); GntR family; putative regulatory protein 3998874 588858004662 STM14_4564 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005240041.1 3998131 R 588858 CDS YP_005240042.1 378452682 complement(3999123..3999230) 1 NC_016856.1 hypothetical protein 3999230 588858004663 STM14_4565 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240042.1 3999123 R 588858 CDS YP_005240043.1 378452683 complement(3999227..3999679) 1 NC_016856.1 putative inner membrane protein 3999679 yicN 588858004664 yicN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240043.1 3999227 R 588858 CDS YP_005240044.1 378452684 complement(3999764..3999871) 1 NC_016856.1 hypothetical protein 3999871 588858004665 STM14_4567 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240044.1 3999764 R 588858 CDS YP_005240045.1 378452685 complement(3999872..4001263) 1 NC_016856.1 cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter 4001263 uhpT 588858004666 uhpT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sugar phosphate antiporter YP_005240045.1 3999872 R 588858 CDS YP_005240046.1 378452686 complement(4001406..4002734) 1 NC_016856.1 membrane protein regulates uhpT expression; regulatory protein UhpC 4002734 uhpC 588858004667 uhpC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S regulatory protein UhpC YP_005240046.1 4001406 R 588858 CDS YP_005240047.1 378452687 complement(4002744..4004246) 1 NC_016856.1 Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; sensory histidine kinase UhpB 4004246 uhpB 588858004668 uhpB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sensory histidine kinase UhpB YP_005240047.1 4002744 R 588858 CDS YP_005240048.1 378452688 complement(4004246..4004836) 1 NC_016856.1 response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; DNA-binding transcriptional activator UhpA 4004836 uhpA 588858004669 uhpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional activator UhpA YP_005240048.1 4004246 R 588858 CDS YP_005240049.1 378452689 complement(4004911..4005924) 1 NC_016856.1 putative cytoplasmic protein 4005924 588858004670 STM14_4572 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240049.1 4004911 R 588858 CDS YP_005240050.1 378452690 complement(4005936..4007252) 1 NC_016856.1 similar to Escherichia coli fucose permease (AAC75843.1); putative L-fucose permease 4007252 588858004671 STM14_4573 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative L-fucose permease YP_005240050.1 4005936 R 588858 CDS YP_005240051.1 378452691 complement(4007283..4008203) 1 NC_016856.1 similar to Escherichia coli ribokinase (AAC76775.1); ribokinase family; putative sugar kinase 4008203 588858004672 STM14_4574 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sugar kinase YP_005240051.1 4007283 R 588858 CDS YP_005240052.1 378452692 4008528..4009313 1 NC_016856.1 similar to Escherichia coli transcriptional repressor for deo operon, tsx, nupG (AAC73927.1); DeoR family; putative regulatory protein 4009313 588858004673 STM14_4575 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005240052.1 4008528 D 588858 CDS YP_005240053.1 378452693 complement(4009315..4009605) 1 NC_016856.1 with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; acetolactate synthase 1 regulatory subunit 4009605 ilvN 588858004674 ilvN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acetolactate synthase 1 regulatory subunit YP_005240053.1 4009315 R 588858 CDS YP_005240054.1 378452694 complement(4009609..4011297) 1 NC_016856.1 catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase catalytic subunit 4011297 ilvB 588858004675 ilvB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acetolactate synthase catalytic subunit YP_005240054.1 4009609 R 588858 CDS YP_005240055.1 378452695 4011296..4011472 1 NC_016856.1 hypothetical protein 4011472 588858004676 STM14_4578 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240055.1 4011296 D 588858 CDS YP_005240056.1 378452696 complement(4011404..4011502) 1 NC_016856.1 similar to Escherichia coli ilvB operon leader peptide (AAC76695.1); ilvB operon leader peptide 4011502 ivbL 588858004677 ivbL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ilvB operon leader peptide YP_005240056.1 4011404 R 588858 CDS YP_005240057.1 378452697 4011519..4011680 1 NC_016856.1 hypothetical protein 4011680 588858004678 STM14_4580 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240057.1 4011519 D 588858 CDS YP_005240058.1 378452698 complement(4011613..4011768) 1 NC_016856.1 hypothetical protein 4011768 588858004679 STM14_4581 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240058.1 4011613 R 588858 CDS YP_005240059.1 378452699 4011777..4011950 1 NC_016856.1 hypothetical protein 4011950 588858004680 STM14_4582 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240059.1 4011777 D 588858 CDS YP_005240060.1 378452700 4012345..4013178 1 NC_016856.1 integral membrane protein 4013178 588858004683 STM14_4585 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S integral membrane protein YP_005240060.1 4012345 D 588858 CDS YP_005240061.1 378452701 4013381..4014565 1 NC_016856.1 multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 4014565 emrD 588858004684 emrD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multidrug resistance protein D YP_005240061.1 4013381 D 588858 CDS YP_005240062.1 378452702 complement(4014492..4015577) 1 NC_016856.1 hypothetical protein 4015577 588858004685 STM14_4587 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240062.1 4014492 R 588858 CDS YP_005240063.1 378452703 complement(4015641..4016564) 1 NC_016856.1 regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC 4016564 dsdC 588858004686 dsdC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator DsdC YP_005240063.1 4015641 R 588858 CDS YP_005240064.1 378452704 complement(4016572..4016697) 1 NC_016856.1 hypothetical protein 4016697 588858004687 STM14_4589 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240064.1 4016572 R 588858 CDS YP_005240065.1 378452705 4016790..4018127 1 NC_016856.1 member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX 4018127 dsdX 588858004688 dsdX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S permease DsdX YP_005240065.1 4016790 D 588858 CDS YP_005240066.1 378452706 4018145..4019467 1 NC_016856.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 4019467 dsdA 588858004689 dsdA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-serine dehydratase YP_005240066.1 4018145 D 588858 CDS YP_005240067.1 378452707 complement(4019549..4020079) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator (AAC76697.1); putative cytoplasmic protein 4020079 yidF 588858004690 yidF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240067.1 4019549 R 588858 CDS YP_005240068.1 378452708 complement(4020076..4020438) 1 NC_016856.1 putative inner membrane protein 4020438 yidG 588858004691 yidG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240068.1 4020076 R 588858 CDS YP_005240069.1 378452709 complement(4020428..4020775) 1 NC_016856.1 putative inner membrane protein 4020775 yidH 588858004692 yidH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240069.1 4020428 R 588858 CDS YP_005240070.1 378452710 4020774..4020887 1 NC_016856.1 hypothetical protein 4020887 588858004693 STM14_4595 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240070.1 4020774 D 588858 CDS YP_005240071.1 378452711 complement(4021219..4022880) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC76708.1); hypothetical protein 4022880 yidE 588858004695 yidE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240071.1 4021219 R 588858 CDS YP_005240072.1 378452712 4022921..4023073 1 NC_016856.1 hypothetical protein 4023073 588858004696 STM14_4598 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240072.1 4022921 D 588858 CDS YP_005240073.1 378452713 complement(4023070..4023498) 1 NC_016856.1 16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent; heat shock chaperone IbpB 4023498 ibpB 588858004697 ibpB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S heat shock chaperone IbpB YP_005240073.1 4023070 R 588858 CDS YP_005240074.1 378452714 complement(4023608..4024027) 1 NC_016856.1 with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; heat shock protein IbpA 4024027 ibpA 588858004698 ibpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S heat shock protein IbpA YP_005240074.1 4023608 R 588858 CDS YP_005240075.1 378452715 4024130..4024306 1 NC_016856.1 hypothetical protein 4024306 588858004699 STM14_4601 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240075.1 4024130 D 588858 CDS YP_005240076.1 378452716 4024328..4024663 1 NC_016856.1 hypothetical protein 4024663 yidQ 588858004700 yidQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240076.1 4024328 D 588858 CDS YP_005240077.1 378452717 complement(4024665..4025891) 1 NC_016856.1 putative cytoplasmic protein 4025891 yidR 588858004701 yidR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240077.1 4024665 R 588858 CDS YP_005240078.1 378452718 complement(4026013..4027056) 1 NC_016856.1 similar to Escherichia coli possible subunit of heme lyase (AAC75254.1); involved in cytochrome c-type biogenesis; putative heme lyase subunit 4027056 ccmH_2 588858004702 ccmH_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative heme lyase subunit YP_005240078.1 4026013 R 588858 CDS YP_005240079.1 378452719 complement(4027053..4027610) 1 NC_016856.1 similar to Escherichia coli disulfide oxidoreductase; biogenesis of cytochrome c (AAC75255.1); heme lyase disulfide oxidoreductase 4027610 ccmG_2 588858004703 ccmG_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S heme lyase disulfide oxidoreductase YP_005240079.1 4027053 R 588858 CDS YP_005240080.1 378452720 complement(4027607..4029538) 1 NC_016856.1 similar to Escherichia coli cytochrome c-type biogenesis protein (AAC75256.1); cytochrome c-type biogenesis protein 4029538 ccmF_2 588858004704 ccmF_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome c-type biogenesis protein YP_005240080.1 4027607 R 588858 CDS YP_005240081.1 378452721 complement(4029535..4030014) 1 NC_016856.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 4030014 ccmE_2 588858004705 ccmE_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome c-type biogenesis protein CcmE YP_005240081.1 4029535 R 588858 CDS YP_005240082.1 378452722 complement(4030011..4030223) 1 NC_016856.1 similar to Escherichia coli heme exporter protein C (AAC75258.1); cytochrome c-type biogenesis protein; heme exporter protein C 4030223 ccmD_2 588858004706 ccmD_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S heme exporter protein C YP_005240082.1 4030011 R 588858 CDS YP_005240083.1 378452723 complement(4030220..4030957) 1 NC_016856.1 similar to Escherichia coli heme exporter protein C (AAC75259.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein; heme exporter protein 4030957 ccmC_2 588858004707 ccmC_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S heme exporter protein YP_005240083.1 4030220 R 588858 CDS YP_005240084.1 378452724 complement(4031009..4031668) 1 NC_016856.1 similar to Escherichia coli heme exporter protein B cytochrome c-type biogenesis protein (AAC75260.1); ABC superfamily membrane protein; cytochrome c-type biogenesis protein; heme exporter protein 4031668 ccmB_2 588858004708 ccmB_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S heme exporter protein YP_005240084.1 4031009 R 588858 CDS YP_005240085.1 378452725 complement(4031665..4032282) 1 NC_016856.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 4032282 ccmA_2 588858004709 ccmA_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome c biogenesis protein CcmA YP_005240085.1 4031665 R 588858 CDS YP_005240086.1 378452726 complement(4032288..4033688) 1 NC_016856.1 similar to Escherichia coli putative cytochrome C peroxidase (AAC76543.1); putative cytochrome c peroxidase 4033688 588858004710 STM14_4612 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytochrome c peroxidase YP_005240086.1 4032288 R 588858 CDS YP_005240087.1 378452727 complement(4033878..4034510) 1 NC_016856.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD 4034510 torD 588858004711 torD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chaperone protein TorD YP_005240087.1 4033878 R 588858 CDS YP_005240088.1 378452728 complement(4034503..4037055) 1 NC_016856.1 similar to Escherichia coli trimethylamine N-oxide reductase subunit (AAC74082.1); trimethylamine N-oxide reductase subunit 4037055 torA 588858004712 torA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S trimethylamine N-oxide reductase subunit YP_005240088.1 4034503 R 588858 CDS YP_005240089.1 378452729 complement(4037045..4038229) 1 NC_016856.1 similar to Escherichia coli trimethylamine N-oxide reductase; cytochrome c-type subunit (AAC74081.1); also has activity as negativer regulator of tor operon; trimethylamine N-oxide reductase cytochrome c-like subunit 4038229 torC 588858004713 torC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S trimethylamine N-oxide reductase cytochrome c-like subunit YP_005240089.1 4037045 R 588858 CDS YP_005240090.1 378452730 4038359..4039051 1 NC_016856.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 4039051 torR 588858004714 torR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator TorR YP_005240090.1 4038359 D 588858 CDS YP_005240091.1 378452731 complement(4039024..4040064) 1 NC_016856.1 similar to Escherichia coli sensor protein involved in regulation of tor operon; periplasmic (AAC74079.1); protein in multi-component regulatory system with sensory kinase TorS and regulator TorR; periplasmic sensory protein associated with the TorRS two-component regulatory system 4040064 torT 588858004715 torT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S periplasmic sensory protein associated with the TorRS two-component regulatory system YP_005240091.1 4039024 R 588858 CDS YP_005240092.1 378452732 4040144..4042879 1 NC_016856.1 Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; hybrid sensory histidine kinase TorS 4042879 torS 588858004716 torS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hybrid sensory histidine kinase TorS YP_005240092.1 4040144 D 588858 CDS YP_005240093.1 378452733 complement(4042905..4044242) 1 NC_016856.1 similar to Escherichia coli D-galactonate transport (AAC76714.1); MFS family; D-galactonate transport protein 4044242 dgoT 588858004717 dgoT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-galactonate transport protein YP_005240093.1 4042905 R 588858 CDS YP_005240094.1 378452734 complement(4044327..4045475) 1 NC_016856.1 similar to Escherichia coli 2-oxo-3-deoxygalactonate 6-phosphate aldolase/galactonate dehydratase (AAC76715.1); 2-oxo-3-deoxygalactonate 6-phosphate aldolase/galactonate dehydratase 4045475 dgoA 588858004718 dgoA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-oxo-3-deoxygalactonate 6-phosphate aldolase/galactonate dehydratase YP_005240094.1 4044327 R 588858 CDS YP_005240095.1 378452735 complement(4046073..4046951) 1 NC_016856.1 similar to Escherichia coli 2-oxo-3-deoxygalactonate kinase (AAC76716.1); 2-oxo-3-deoxygalactonate kinase 4046951 dgoK 588858004720 dgoK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 2-oxo-3-deoxygalactonate kinase YP_005240095.1 4046073 R 588858 CDS YP_005240096.1 378452736 complement(4046948..4047637) 1 NC_016856.1 similar to Escherichia coli regulator protein for dgo operon (AAC76718.1); GntR family; galactonate operon transcriptional repressor 4047637 dgoR 588858004721 dgoR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S galactonate operon transcriptional repressor YP_005240096.1 4046948 R 588858 CDS YP_005240097.1 378452737 complement(4047898..4048743) 1 NC_016856.1 YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins; sugar phosphatase 4048743 yidA 588858004722 yidA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sugar phosphatase YP_005240097.1 4047898 R 588858 CDS YP_005240098.1 378452738 4049049..4050311 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC75831.1); putative permease 4050311 588858004723 STM14_4625 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005240098.1 4049049 D 588858 CDS YP_005240099.1 378452739 4050325..4051518 1 NC_016856.1 similar to Escherichia coli starvation-sensing protein (AAC74653.1); muconate lactonizing enzyme family; putative mandelate racemase 4051518 588858004724 STM14_4626 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative mandelate racemase YP_005240099.1 4050325 D 588858 CDS YP_005240100.1 378452740 4051633..4052529 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC73855.1); LysR family; putative transcriptional regulator 4052529 588858004725 STM14_4627 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005240100.1 4051633 D 588858 CDS YP_005240101.1 378452741 complement(4052548..4054962) 1 NC_016856.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 4054962 gyrB 588858004726 gyrB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA gyrase subunit B YP_005240101.1 4052548 R 588858 CDS YP_005240102.1 378452742 complement(4054991..4056064) 1 NC_016856.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4056064 recF 588858004727 recF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S recombination protein F YP_005240102.1 4054991 R 588858 CDS YP_005240103.1 378452743 4056093..4056239 1 NC_016856.1 hypothetical protein 4056239 588858004728 STM14_4630 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240103.1 4056093 D 588858 CDS YP_005240104.1 378452744 complement(4056212..4057312) 1 NC_016856.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 4057312 dnaN 588858004729 dnaN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA polymerase III subunit beta YP_005240104.1 4056212 R 588858 CDS YP_005240105.1 378452745 complement(4057317..4058717) 1 NC_016856.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 4058717 dnaA 588858004730 dnaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chromosomal replication initiation protein YP_005240105.1 4057317 R 588858 CDS YP_005240106.1 378452746 4059079..4059237 1 NC_016856.1 hypothetical protein 4059237 588858004731 STM14_4633 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240106.1 4059079 D 588858 CDS YP_005240107.1 378452747 4059378..4059518 1 NC_016856.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4059518 rpmH 588858004732 rpmH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L34 YP_005240107.1 4059378 D 588858 CDS YP_005240108.1 378452748 4059535..4059894 1 NC_016856.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4059894 rnpA 588858004733 rnpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonuclease P YP_005240108.1 4059535 D 588858 CDS YP_005240109.1 378452749 4059858..4060115 1 NC_016856.1 hypothetical protein 4060115 588858004734 STM14_4636 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240109.1 4059858 D 588858 CDS YP_005240110.1 378452750 4060118..4061764 1 NC_016856.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 4061764 yidC 588858004735 yidC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein translocase component YidC YP_005240110.1 4060118 D 588858 CDS YP_005240111.1 378452751 4061906..4063270 1 NC_016856.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 4063270 trmE 588858004736 trmE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tRNA modification GTPase TrmE YP_005240111.1 4061906 D 588858 CDS YP_005240112.1 378452752 4065071..4066033 1 NC_016856.1 putative inner membrane protein 4066033 588858004738 STM14_4640 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240112.1 4065071 D 588858 CDS YP_005240113.1 378452753 4066033..4066968 1 NC_016856.1 RNA-dependent DNA polymerase; putative reverse transcriptase 4066968 588858004739 STM14_4641 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative reverse transcriptase YP_005240113.1 4066033 D 588858 CDS YP_005240114.1 378452754 4067770..4068957 1 NC_016856.1 Confers resistance to chloramphenicol; multidrug efflux system protein MdtL 4068957 yidY 588858004740 yidY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multidrug efflux system protein MdtL YP_005240114.1 4067770 D 588858 CDS YP_005240115.1 378452755 4068926..4069885 1 NC_016856.1 Involved in anaerobic NO protection; DNA-binding transcriptional regulator YidZ 4069885 yidZ 588858004741 yidZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator YidZ YP_005240115.1 4068926 D 588858 CDS YP_005240116.1 378452756 4070043..4070798 1 NC_016856.1 putative cytoplasmic protein 4070798 yieE 588858004742 yieE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240116.1 4070043 D 588858 CDS YP_005240117.1 378452757 4070816..4071382 1 NC_016856.1 putative oxidoreductase 4071382 yieF 588858004743 yieF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative oxidoreductase YP_005240117.1 4070816 D 588858 CDS YP_005240118.2 410023217 complement(4071427..4072764) 1 NC_016856.1 similar to Escherichia coli putative membrane/transport protein (AAC76737.1); xanthine/uracil permeases family; putative xanthine/uracil permease family protein 4072764 yieG 588858004744 yieG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative xanthine/uracil permease family protein YP_005240118.2 4071427 R 588858 CDS YP_005240119.1 378452759 4072933..4073598 1 NC_016856.1 YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily; 6-phosphogluconate phosphatase 4073598 yieH 588858004745 yieH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 6-phosphogluconate phosphatase YP_005240119.1 4072933 D 588858 CDS YP_005240120.1 378452760 complement(4073693..4074418) 1 NC_016856.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 4074418 phoU 588858004746 phoU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator PhoU YP_005240120.1 4073693 R 588858 CDS YP_005240121.1 378452761 complement(4074433..4075206) 1 NC_016856.1 similar to Escherichia coli ATP-binding component of high-affinity phosphate-specific transport system (AAC76748.1); ABC superfamily ATP-binding protein; phosphate transporter subunit 4075206 pstB 588858004747 pstB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphate transporter subunit YP_005240121.1 4074433 R 588858 CDS YP_005240122.1 378452762 complement(4075293..4076183) 1 NC_016856.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit 4076183 pstA 588858004748 pstA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphate transporter permease subunit YP_005240122.1 4075293 R 588858 CDS YP_005240123.1 378452763 complement(4076183..4077142) 1 NC_016856.1 part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit 4077142 pstC 588858004749 pstC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphate transporter permease subunit YP_005240123.1 4076183 R 588858 CDS YP_005240124.1 378452764 complement(4077278..4078318) 1 NC_016856.1 similar to Escherichia coli high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein (AAC76751.1); ABC superfamily binding protein; phosphate transporter subunit 4078318 pstS 588858004750 pstS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphate transporter subunit YP_005240124.1 4077278 R 588858 CDS YP_005240125.1 378452765 complement(4078485..4079858) 1 NC_016856.1 similar to Escherichia coli PTS system; fructose-specific transport protein (AAC75228.1); putative phosphotransferase system fructose-specific component IIB 4079858 588858004751 STM14_4653 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phosphotransferase system fructose-specific component IIB YP_005240125.1 4078485 R 588858 CDS YP_005240126.1 378452766 complement(4079907..4080725) 1 NC_016856.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 4080725 aroE_3 588858004752 aroE_3 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S shikimate 5-dehydrogenase YP_005240126.1 4079907 R 588858 CDS YP_005240127.1 378452767 4080820..4082577 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC73180.1); putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component 4082577 588858004753 STM14_4655 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component YP_005240127.1 4080820 D 588858 CDS YP_005240128.1 378452768 complement(4082728..4084557) 1 NC_016856.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6Pusing glutamine as a nitrogen source; D-fructose-6-phosphate amidotransferase 4084557 glmS 588858004754 glmS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-fructose-6-phosphate amidotransferase YP_005240128.1 4082728 R 588858 CDS YP_005240129.1 378452769 complement(4084746..4086116) 1 NC_016856.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 4086116 glmU 588858004755 glmU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_005240129.1 4084746 R 588858 CDS YP_005240130.1 378452770 4086316..4086504 1 NC_016856.1 hypothetical protein 4086504 588858004756 STM14_4658 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240130.1 4086316 D 588858 CDS YP_005240131.1 378452771 complement(4086436..4087134) 1 NC_016856.1 putative permease 4087134 588858004757 STM14_4659 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005240131.1 4086436 R 588858 CDS YP_005240132.1 378452772 complement(4087364..4087783) 1 NC_016856.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 4087783 atpC 588858004758 atpC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S F0F1 ATP synthase subunit epsilon YP_005240132.1 4087364 R 588858 CDS YP_005240133.1 378452773 complement(4087804..4089186) 1 NC_016856.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 4089186 atpD 588858004759 atpD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S F0F1 ATP synthase subunit beta YP_005240133.1 4087804 R 588858 CDS YP_005240134.1 378452774 complement(4089213..4090076) 1 NC_016856.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 4090076 atpG 588858004760 atpG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S F0F1 ATP synthase subunit gamma YP_005240134.1 4089213 R 588858 CDS YP_005240135.1 378452775 complement(4090127..4091668) 1 NC_016856.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 4091668 atpA 588858004761 atpA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S F0F1 ATP synthase subunit alpha YP_005240135.1 4090127 R 588858 CDS YP_005240136.1 378452776 complement(4091681..4092214) 1 NC_016856.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 4092214 atpH 588858004762 atpH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S F0F1 ATP synthase subunit delta YP_005240136.1 4091681 R 588858 CDS YP_005240137.1 378452777 complement(4092229..4092699) 1 NC_016856.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 4092699 atpF 588858004763 atpF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S F0F1 ATP synthase subunit B YP_005240137.1 4092229 R 588858 CDS YP_005240138.1 378452778 complement(4092759..4092998) 1 NC_016856.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 4092998 atpE 588858004764 atpE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S F0F1 ATP synthase subunit C YP_005240138.1 4092759 R 588858 CDS YP_005240139.1 378452779 complement(4093045..4093860) 1 NC_016856.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 4093860 atpB 588858004765 atpB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S F0F1 ATP synthase subunit A YP_005240139.1 4093045 R 588858 CDS YP_005240140.1 378452780 complement(4093869..4094249) 1 NC_016856.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I 4094249 atpI 588858004766 atpI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S F0F1 ATP synthase subunit I YP_005240140.1 4093869 R 588858 CDS YP_005240141.1 378452781 complement(4094364..4094507) 1 NC_016856.1 hypothetical protein 4094507 588858004767 STM14_4669 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240141.1 4094364 R 588858 CDS YP_005240142.1 378452782 complement(4094865..4095494) 1 NC_016856.1 probable SAM-dependent methyltransferase; glucose-inhibited division protein B 4095494 gidB 588858004768 gidB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucose-inhibited division protein B YP_005240142.1 4094865 R 588858 CDS YP_005240143.1 378452783 complement(4095591..4097480) 1 NC_016856.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 4097480 gidA 588858004769 gidA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_005240143.1 4095591 R 588858 CDS YP_005240144.1 378452784 complement(4097859..4098302) 1 NC_016856.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 4098302 mioC 588858004770 mioC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flavodoxin YP_005240144.1 4097859 R 588858 CDS YP_005240145.1 378452785 complement(4098392..4098850) 1 NC_016856.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 4098850 asnC 588858004771 asnC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator AsnC YP_005240145.1 4098392 R 588858 CDS YP_005240146.1 378452786 4099001..4099993 1 NC_016856.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 4099993 asnA 588858004772 asnA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S asparagine synthetase AsnA YP_005240146.1 4099001 D 588858 CDS YP_005240147.1 378452787 complement(4099998..4101449) 1 NC_016856.1 contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; hypothetical protein 4101449 yieM 588858004773 yieM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240147.1 4099998 R 588858 CDS YP_005240148.1 378452788 complement(4101443..4103047) 1 NC_016856.1 interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase; regulatory ATPase RavA 4103047 yieN 588858004774 yieN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S regulatory ATPase RavA YP_005240148.1 4101443 R 588858 CDS YP_005240149.1 378452789 4103287..4105155 1 NC_016856.1 Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transport protein Kup 4105155 trkD 588858004775 trkD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S potassium transport protein Kup YP_005240149.1 4103287 D 588858 CDS YP_005240150.1 378452790 4105352..4105771 1 NC_016856.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 4105771 rbsD 588858004776 rbsD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-ribose pyranase YP_005240150.1 4105352 D 588858 CDS YP_005240151.1 378452791 4105779..4107284 1 NC_016856.1 with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP-binding protein 4107284 rbsA 588858004777 rbsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-ribose transporter ATP-binding protein YP_005240151.1 4105779 D 588858 CDS YP_005240152.1 378452792 4107290..4108255 1 NC_016856.1 functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease 4108255 rbsC 588858004778 rbsC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribose ABC transporter permease YP_005240152.1 4107290 D 588858 CDS YP_005240153.1 378452793 4108280..4109170 1 NC_016856.1 periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 4109170 rbsB 588858004779 rbsB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-ribose transporter subunit RbsB YP_005240153.1 4108280 D 588858 CDS YP_005240154.1 378452794 4109304..4110233 1 NC_016856.1 catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 4110233 rbsK 588858004780 rbsK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribokinase YP_005240154.1 4109304 D 588858 CDS YP_005240155.1 378452795 4110237..4111235 1 NC_016856.1 DNA-binding transcriptional repressor of ribose metabolism; transcriptional repressor RbsR 4111235 rbsR 588858004781 rbsR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional repressor RbsR YP_005240155.1 4110237 D 588858 CDS YP_005240156.1 378452796 complement(4111201..4112628) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC76777.1); MFS family; 1st module; putative tranport protein 4112628 yieO 588858004782 yieO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative tranport protein YP_005240156.1 4111201 R 588858 CDS YP_005240157.1 378452797 complement(4112640..4113344) 1 NC_016856.1 GntR family; putative regulatory protein 4113344 yieP 588858004783 yieP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005240157.1 4112640 R 588858 CDS YP_005240158.1 378452798 complement(4119236..4120084) 1 NC_016856.1 Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; transcriptional regulator HdfR 4120084 yifA 588858004791 yifA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator HdfR YP_005240158.1 4119236 R 588858 CDS YP_005240159.1 378452799 4120191..4120529 1 NC_016856.1 LysR type regulator; with pssR; hypothetical protein 4120529 yifE 588858004792 yifE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240159.1 4120191 D 588858 CDS YP_005240160.1 378452800 complement(4120554..4122074) 1 NC_016856.1 among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; putative ATP-dependent protease 4122074 yifB 588858004793 yifB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ATP-dependent protease YP_005240160.1 4120554 R 588858 CDS YP_005240161.1 378452801 4122161..4122346 1 NC_016856.1 hypothetical protein 4122346 588858004794 STM14_4696 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240161.1 4122161 D 588858 CDS YP_005240162.1 378452802 4122426..4122524 1 NC_016856.1 ilvGmedA operon leader peptide; attenuator peptide (SW:LPID_ECOLI); ilvG operon leader peptide 4122524 ilvL 588858004795 ilvL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ilvG operon leader peptide YP_005240162.1 4122426 D 588858 CDS YP_005240163.1 378452803 4122664..4124310 1 NC_016856.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 4124310 ilvG 588858004796 ilvG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acetolactate synthase 2 catalytic subunit YP_005240163.1 4122664 D 588858 CDS YP_005240164.1 378452804 4124310..4124570 1 NC_016856.1 similar to Escherichia coli acetolactate synthase II; valine insensitive (AAC77489.1); acetolactate synthase 2 regulatory subunit 4124570 ilvM 588858004797 ilvM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acetolactate synthase 2 regulatory subunit YP_005240164.1 4124310 D 588858 CDS YP_005240165.1 378452805 4124588..4125517 1 NC_016856.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4125517 ilvE 588858004798 ilvE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S branched-chain amino acid aminotransferase YP_005240165.1 4124588 D 588858 CDS YP_005240166.1 378452806 4125678..4127528 1 NC_016856.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4127528 ilvD 588858004799 ilvD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dihydroxy-acid dehydratase YP_005240166.1 4125678 D 588858 CDS YP_005240167.1 378452807 4127531..4129075 1 NC_016856.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 4129075 ilvA 588858004800 ilvA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S threonine dehydratase YP_005240167.1 4127531 D 588858 CDS YP_005240168.1 378452808 4129359..4129676 1 NC_016856.1 putative cytoplasmic protein 4129676 588858004801 STM14_4703 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240168.1 4129359 D 588858 CDS YP_005240169.1 378452809 4129673..4130014 1 NC_016856.1 putative cytoplasmic protein 4130014 588858004802 STM14_4704 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240169.1 4129673 D 588858 CDS YP_005240170.1 378452810 complement(4130017..4130904) 1 NC_016856.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 4130904 ilvY 588858004803 ilvY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator IlvY YP_005240170.1 4130017 R 588858 CDS YP_005240171.1 378452811 4131068..4132543 1 NC_016856.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 4132543 ilvC 588858004804 ilvC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ketol-acid reductoisomerase YP_005240171.1 4131068 D 588858 CDS YP_005240172.1 378452812 complement(4132635..4132916) 1 NC_016856.1 similar to Escherichia coli peptidyl-prolyl cis-trans isomerase C; rotamase C (AAC76780.1); peptidyl-prolyl cis-trans isomerase C 4132916 ppiC 588858004805 ppiC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptidyl-prolyl cis-trans isomerase C YP_005240172.1 4132635 R 588858 CDS YP_005240173.1 378452813 4132921..4133268 1 NC_016856.1 cyclic nucleotide-binding domain-containing protein 4133268 588858004806 STM14_4708 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cyclic nucleotide-binding domain-containing protein YP_005240173.1 4132921 D 588858 CDS YP_005240174.1 378452814 4133205..4133354 1 NC_016856.1 similar to Escherichia coli required for NMN transport (AAC73838.1); putative inner membrane protein 4133354 588858004807 STM14_4709 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240174.1 4133205 D 588858 CDS YP_005240175.1 378452815 4133355..4135478 1 NC_016856.1 single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; ATP-dependent DNA helicase Rep 4135478 rep 588858004808 rep Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-dependent DNA helicase Rep YP_005240175.1 4133355 D 588858 CDS YP_005240176.1 378452816 complement(4135518..4136999) 1 NC_016856.1 catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; guanosine pentaphosphate phosphohydrolase 4136999 gppA 588858004809 gppA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S guanosine pentaphosphate phosphohydrolase YP_005240176.1 4135518 R 588858 CDS YP_005240177.1 378452817 complement(4137118..4138383) 1 NC_016856.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 4138383 rhlB 588858004810 rhlB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-dependent RNA helicase RhlB YP_005240177.1 4137118 R 588858 CDS YP_005240178.1 378452818 4138527..4138856 1 NC_016856.1 thioredoxin 1; TRX1; TRX (SW:THIO_ECOLI); redox factor; thioredoxin 4138856 trxA 588858004811 trxA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thioredoxin YP_005240178.1 4138527 D 588858 CDS YP_005240179.1 378452819 4139275..4140534 1 NC_016856.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 4140534 rho 588858004813 rho Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcription termination factor Rho YP_005240179.1 4139275 D 588858 CDS YP_005240180.1 378452820 4140764..4141867 1 NC_016856.1 similar to Escherichia coli UDP-GlcNAc-undecaprenylphosphate GlcNAc-1-phosphate transferase; synthesis of enterobacterial common antigen; ECA (AAC76789.1); undecaprenyl-phosphate N-acetylglucosaminyltransferase 4141867 rfe 588858004814 rfe Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S undecaprenyl-phosphate N-acetylglucosaminyltransferase YP_005240180.1 4140764 D 588858 CDS YP_005240181.1 378452821 4141879..4142925 1 NC_016856.1 Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; lipopolysaccharide biosynthesis protein WzzE 4142925 wzzE 588858004815 wzzE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipopolysaccharide biosynthesis protein WzzE YP_005240181.1 4141879 D 588858 CDS YP_005240182.1 378452822 4142981..4144111 1 NC_016856.1 similar to Escherichia coli UDP-N-acetyl glucosamine-2-epimerase; synthesis of enterobacterial common antigen; ECA (AAC76791.1); UDP-N-acetyl glucosamine-2-epimerase 4144111 wecB 588858004816 wecB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UDP-N-acetyl glucosamine-2-epimerase YP_005240182.1 4142981 D 588858 CDS YP_005240183.1 378452823 4144108..4145370 1 NC_016856.1 catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase 4145370 wecC 588858004817 wecC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UDP-N-acetyl-D-mannosamine dehydrogenase YP_005240183.1 4144108 D 588858 CDS YP_005240184.1 378452824 4145370..4146437 1 NC_016856.1 similar to Escherichia coli dTDP-glucose 4,6-dehydratase (AAC76793.1); dTDP-glucose 4,6-dehydratase 4146437 rffG 588858004818 rffG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dTDP-glucose 4,6-dehydratase YP_005240184.1 4145370 D 588858 CDS YP_005240185.1 378452825 4146470..4146694 1 NC_016856.1 similar to Escherichia coli glucose-1-phosphate thymidylyltransferase (AAC76794.1); glucose-1-phosphate thymidylyltransferase 4146694 rffH 588858004819 rffH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucose-1-phosphate thymidylyltransferase YP_005240185.1 4146470 D 588858 CDS YP_005240186.1 378452826 4146672..4147349 1 NC_016856.1 TDP-fucosamine acetyltransferase 4147349 wecD 588858004820 wecD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S TDP-fucosamine acetyltransferase YP_005240186.1 4146672 D 588858 CDS YP_005240187.1 378452827 4147354..4148484 1 NC_016856.1 catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4148484 wecE 588858004821 wecE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S TDP-4-oxo-6-deoxy-D-glucose transaminase YP_005240187.1 4147354 D 588858 CDS YP_005240188.1 378452828 4148486..4149736 1 NC_016856.1 similar to Escherichia coli putative cytochrome (AAC76797.1); involved in LPS biosynthesis; O-antigen translocase 4149736 wzxE 588858004822 wzxE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S O-antigen translocase YP_005240188.1 4148486 D 588858 CDS YP_005240189.1 378452829 4149733..4150812 1 NC_016856.1 catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase 4150812 588858004823 STM14_4725 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-alpha-L-fucosyltransferase YP_005240189.1 4149733 D 588858 CDS YP_005240190.1 378452830 4150809..4152167 1 NC_016856.1 probable 4-alpha-L-fucosyltransferase (SW:WECF_SALTY); putative entero common antigen polymerase 4152167 wecF 588858004824 wecF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative entero common antigen polymerase YP_005240190.1 4150809 D 588858 CDS YP_005240191.1 378452831 4152164..4152904 1 NC_016856.1 probable UDP-N-acetyl-D-mannosaminuronic acid transferase (SW:WECG_SALTY); putative UDP-N-acetyl-D-mannosaminuronic acid transferase 4152904 wecG 588858004825 wecG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative UDP-N-acetyl-D-mannosaminuronic acid transferase YP_005240191.1 4152164 D 588858 CDS YP_005240192.1 378452832 4153111..4154496 1 NC_016856.1 uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function; putative transport protein YifK 4154496 yifK 588858004826 yifK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YifK YP_005240192.1 4153111 D 588858 CDS YP_005240193.1 378452833 4155257..4155382 1 NC_016856.1 hypothetical protein 4155382 588858004831 STM14_4733 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240193.1 4155257 D 588858 CDS YP_005240194.1 378452834 complement(4155613..4156812) 1 NC_016856.1 similar to Escherichia coli protein involved in a late step of protoheme IX synthesis (AAC76805.1); putative protoheme IX biogenesis protein 4156812 hemY 588858004832 hemY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative protoheme IX biogenesis protein YP_005240194.1 4155613 R 588858 CDS YP_005240195.1 378452835 complement(4156812..4157981) 1 NC_016856.1 similar to Escherichia coli uroporphyrinogen III methylase (AAC76806.1); putative uroporphyrinogen III C-methyltransferase 4157981 hemX 588858004833 hemX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative uroporphyrinogen III C-methyltransferase YP_005240195.1 4156812 R 588858 CDS YP_005240196.1 378452836 complement(4158003..4158743) 1 NC_016856.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 4158743 hemD 588858004834 hemD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S uroporphyrinogen-III synthase YP_005240196.1 4158003 R 588858 CDS YP_005240197.1 378452837 complement(4158740..4159696) 1 NC_016856.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 4159696 hemC 588858004835 hemC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S porphobilinogen deaminase YP_005240197.1 4158740 R 588858 CDS YP_005240198.1 378452838 complement(4159908..4160012) 1 NC_016856.1 hypothetical protein 4160012 588858004836 STM14_4738 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240198.1 4159908 R 588858 CDS YP_005240199.1 378452839 4160058..4162604 1 NC_016856.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 4162604 cyaA 588858004837 cyaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S adenylate cyclase YP_005240199.1 4160058 D 588858 CDS YP_005240200.1 378452840 4162570..4162710 1 NC_016856.1 hypothetical protein 4162710 588858004838 STM14_4740 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240200.1 4162570 D 588858 CDS YP_005240201.1 378452841 4162712..4163065 1 NC_016856.1 putative inner membrane protein 4163065 588858004839 STM14_4741 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240201.1 4162712 D 588858 CDS YP_005240202.1 378452842 4163251..4163793 1 NC_016856.1 putative inner membrane protein 4163793 588858004840 STM14_4742 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240202.1 4163251 D 588858 CDS YP_005240203.1 378452843 4163805..4164167 1 NC_016856.1 putative cytoplasmic protein 4164167 588858004841 STM14_4743 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240203.1 4163805 D 588858 CDS YP_005240204.1 378452844 complement(4164238..4164558) 1 NC_016856.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 4164558 cyaY 588858004842 cyaY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S frataxin-like protein YP_005240204.1 4164238 R 588858 CDS YP_005240205.1 378452845 complement(4164628..4165017) 1 NC_016856.1 putative inner membrane protein 4165017 588858004843 STM14_4745 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240205.1 4164628 R 588858 CDS YP_005240206.1 378452846 4165713..4165916 1 NC_016856.1 putative outer membrane lipoprotein 4165916 yifL 588858004845 yifL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005240206.1 4165713 D 588858 CDS YP_005240207.1 378452847 4165953..4166777 1 NC_016856.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4166777 dapF 588858004846 dapF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S diaminopimelate epimerase YP_005240207.1 4165953 D 588858 CDS YP_005240208.1 378452848 4166774..4167481 1 NC_016856.1 hypothetical protein in dapF-xerC intergenic region (SW:YIGA_SALTY); hypothetical protein 4167481 yigA 588858004847 yigA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240208.1 4166774 D 588858 CDS YP_005240209.1 378452849 4167478..4168380 1 NC_016856.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 4168380 xerC 588858004848 xerC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S site-specific tyrosine recombinase XerC YP_005240209.1 4167478 D 588858 CDS YP_005240210.1 378452850 4168380..4169096 1 NC_016856.1 YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; flavin mononucleotide phosphatase 4169096 yigB 588858004849 yigB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S flavin mononucleotide phosphatase YP_005240210.1 4168380 D 588858 CDS YP_005240211.1 378452851 4169232..4171394 1 NC_016856.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 4171394 uvrD 588858004850 uvrD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-dependent helicase II YP_005240211.1 4169232 D 588858 CDS YP_005240212.1 378452852 complement(4171444..4171629) 1 NC_016856.1 hypothetical protein 4171629 588858004851 STM14_4753 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240212.1 4171444 R 588858 CDS YP_005240213.1 378452853 4171866..4172816 1 NC_016856.1 responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA 4172816 corA 588858004852 corA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S magnesium/nickel/cobalt transporter CorA YP_005240213.1 4171866 D 588858 CDS YP_005240214.1 378452854 complement(4172865..4173245) 1 NC_016856.1 hypothetical 14.6 kDa protein in corA-rarD intergenic region (SW:YIGF_SALTY); putative inner membrane protein 4173245 yigF 588858004853 yigF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240214.1 4172865 R 588858 CDS YP_005240215.1 378452855 complement(4173261..4173719) 1 NC_016856.1 hypothetical protein 4173719 yigG 588858004854 yigG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240215.1 4173261 R 588858 CDS YP_005240216.1 378452856 complement(4173754..4174638) 1 NC_016856.1 chloramphenicol resistance 4174638 rarD 588858004855 rarD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chloramphenicol resistance YP_005240216.1 4173754 R 588858 CDS YP_005240217.1 378452857 complement(4174682..4175149) 1 NC_016856.1 hypothetical protein in rarD-pldA intergenic region (SW:YIGI_SALTY); possibly involved in aromatic compounds catabolism; PaaI; hypothetical protein 4175149 yigI 588858004856 yigI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240217.1 4174682 R 588858 CDS YP_005240218.1 378452858 complement(4175211..4175348) 1 NC_016856.1 hypothetical protein 4175348 588858004857 STM14_4759 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240218.1 4175211 R 588858 CDS YP_005240219.1 378452859 4175314..4176183 1 NC_016856.1 catalyzes the hydrolysis of phosphatidylcholine; phospholipase A 4176183 pldA 588858004858 pldA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phospholipase A YP_005240219.1 4175314 D 588858 CDS YP_005240220.1 378452860 4176249..4178096 1 NC_016856.1 functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; ATP-dependent DNA helicase RecQ 4178096 recQ 588858004859 recQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-dependent DNA helicase RecQ YP_005240220.1 4176249 D 588858 CDS YP_005240221.1 378452861 4178160..4178780 1 NC_016856.1 RhtB family; threonine efflux system 4178780 rhtC 588858004860 rhtC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S threonine efflux system YP_005240221.1 4178160 D 588858 CDS YP_005240222.1 378452862 complement(4178820..4179440) 1 NC_016856.1 homoserine/homoserine lactone efflux protein 4179440 rhtB 588858004861 rhtB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S homoserine/homoserine lactone efflux protein YP_005240222.1 4178820 R 588858 CDS YP_005240223.1 378452863 4179455..4180567 1 NC_016856.1 lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; lysophospholipase L2 4180567 pldB 588858004862 pldB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lysophospholipase L2 YP_005240223.1 4179455 D 588858 CDS YP_005240224.1 378452864 4180583..4181383 1 NC_016856.1 purine and pyrimidine nucleotides are secondary substrates; yigL expression is regulated by heat shock, osmotic shock and starvation of glucose, phosphate or ammonium; putative sugar phosphatase 4181383 yigL 588858004863 yigL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sugar phosphatase YP_005240224.1 4180583 D 588858 CDS YP_005240225.1 378452865 4181464..4182363 1 NC_016856.1 putative transport protein 4182363 yigM 588858004864 yigM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005240225.1 4181464 D 588858 CDS YP_005240226.1 378452866 complement(4182251..4183204) 1 NC_016856.1 transcriptional activator protein metR (SW:METR_SALTY); LysR family; metE/metH regulator 4183204 metR 588858004865 metR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S metE/metH regulator YP_005240226.1 4182251 R 588858 CDS YP_005240227.1 378452867 4183187..4183360 1 NC_016856.1 hypothetical protein 4183360 588858004866 STM14_4768 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240227.1 4183187 D 588858 CDS YP_005240228.1 378452868 4183453..4185717 1 NC_016856.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 4185717 metE 588858004867 metE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_005240228.1 4183453 D 588858 CDS YP_005240229.1 378452869 complement(4185870..4186004) 1 NC_016856.1 hypothetical protein 4186004 588858004868 STM14_4770 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240229.1 4185870 R 588858 CDS YP_005240230.1 378452870 4185906..4186052 1 NC_016856.1 hypothetical protein 4186052 588858004869 STM14_4771 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240230.1 4185906 D 588858 CDS YP_005240231.1 378452871 4186061..4187404 1 NC_016856.1 similar to Escherichia coli putative arylsulfatase regulator (AAC76803.1); putative arylsulfatase regulator 4187404 588858004870 STM14_4772 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative arylsulfatase regulator YP_005240231.1 4186061 D 588858 CDS YP_005240232.1 378452872 complement(4187484..4188296) 1 NC_016856.1 similar to Escherichia coli putative enzyme (AAC76833.1); putative dienelactone hydrolase 4188296 dlhH 588858004871 dlhH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dienelactone hydrolase YP_005240232.1 4187484 R 588858 CDS YP_005240233.1 378452873 4188555..4189316 1 NC_016856.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4189316 udp 588858004872 udp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S uridine phosphorylase YP_005240233.1 4188555 D 588858 CDS YP_005240234.1 378452874 4189456..4190886 1 NC_016856.1 YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner; DNA recombination protein RmuC 4190886 yigN 588858004873 yigN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA recombination protein RmuC YP_005240234.1 4189456 D 588858 CDS YP_005240235.1 378452875 4190982..4191737 1 NC_016856.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 4191737 ubiE 588858004874 ubiE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ubiquinone/menaquinone biosynthesis methyltransferase YP_005240235.1 4190982 D 588858 CDS YP_005240236.1 378452876 4191747..4192352 1 NC_016856.1 putative inner membrane protein 4192352 yigP 588858004875 yigP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240236.1 4191747 D 588858 CDS YP_005240237.1 378452877 4192349..4193989 1 NC_016856.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; putative ubiquinone biosynthesis protein UbiB 4193989 ubiB 588858004876 ubiB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ubiquinone biosynthesis protein UbiB YP_005240237.1 4192349 D 588858 CDS YP_005240238.1 378452878 4194195..4194449 1 NC_016856.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin argininte translocase protein A 4194449 tatA 588858004877 tatA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S twin argininte translocase protein A YP_005240238.1 4194195 D 588858 CDS YP_005240239.1 378452879 4194453..4195001 1 NC_016856.1 mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 4195001 tatB 588858004878 tatB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sec-independent translocase YP_005240239.1 4194453 D 588858 CDS YP_005240240.1 378452880 4195004..4195783 1 NC_016856.1 integral membrane protein; TatABCE protein translocation system subunit 4195783 tatC 588858004879 tatC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S TatABCE protein translocation system subunit YP_005240240.1 4195004 D 588858 CDS YP_005240241.1 378452881 4195813..4196607 1 NC_016856.1 magnesium dependent; not involved in the Sec-independent protein export system; DNase TatD 4196607 yigW 588858004880 yigW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNase TatD YP_005240241.1 4195813 D 588858 CDS YP_005240242.1 378452882 complement(4196615..4197103) 1 NC_016856.1 similar to Escherichia coli transcriptional activator that affects biosynthesis of lipopolysaccharide core, F pilin, and haemolysin (AAC76845.1); responsible for full expression of operons rfa, rfb, hly, tra, chu, cps, and kps; may suppress operon polarity; transcriptional activator RfaH 4197103 rfaH 588858004881 rfaH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional activator RfaH YP_005240242.1 4196615 R 588858 CDS YP_005240243.1 378452883 4197098..4197223 1 NC_016856.1 hypothetical protein 4197223 588858004882 STM14_4784 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240243.1 4197098 D 588858 CDS YP_005240244.1 378452884 4197289..4198767 1 NC_016856.1 catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 4198767 yigC 588858004883 yigC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_005240244.1 4197289 D 588858 CDS YP_005240245.1 378452885 4198853..4199554 1 NC_016856.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; FMN reductase 4199554 fre 588858004884 fre Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S FMN reductase YP_005240245.1 4198853 D 588858 CDS YP_005240246.1 378452886 4199808..4201631 1 NC_016856.1 arylsulfotransferase 4201631 assT 588858004885 assT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S arylsulfotransferase YP_005240246.1 4199808 D 588858 CDS YP_005240247.1 378452887 complement(4201828..4202991) 1 NC_016856.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 4202991 fadA 588858004886 fadA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-ketoacyl-CoA thiolase YP_005240247.1 4201828 R 588858 CDS YP_005240248.1 378452888 complement(4203001..4205316) 1 NC_016856.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 4205316 fadB 588858004887 fadB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S multifunctional fatty acid oxidation complex subunit alpha YP_005240248.1 4203001 R 588858 CDS YP_005240249.1 378452889 4205380..4206711 1 NC_016856.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 4206711 pepQ 588858004888 pepQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S proline dipeptidase YP_005240249.1 4205380 D 588858 CDS YP_005240250.1 378452890 4206711..4207325 1 NC_016856.1 hypothetical protein 4207325 yigZ 588858004889 yigZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240250.1 4206711 D 588858 CDS YP_005240251.1 378452891 4207364..4208815 1 NC_016856.1 similar to Escherichia coli potassium uptake, requires TrkE (AAC76852.1); Trk family; potassium transporter 4208815 trkH 588858004890 trkH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S potassium transporter YP_005240251.1 4207364 D 588858 CDS YP_005240252.1 378452892 4208827..4209372 1 NC_016856.1 catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 4209372 hemG 588858004891 hemG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S protoporphyrinogen oxidase YP_005240252.1 4208827 D 588858 CDS YP_005240253.1 378452893 4211633..4211749 1 NC_016856.1 hypothetical protein 4211749 588858004895 STM14_4797 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240253.1 4211633 D 588858 CDS YP_005240254.1 378452894 complement(4215049..4215231) 1 NC_016856.1 hypothetical protein 4215231 588858004898 STM14_4800 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240254.1 4215049 R 588858 CDS YP_005240255.1 378452895 4215077..4215433 1 NC_016856.1 hypothetical protein 4215433 588858004899 STM14_4801 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240255.1 4215077 D 588858 CDS YP_005240256.1 378452896 complement(4215268..4215783) 1 NC_016856.1 similar to Escherichia coli molybdopterin-guanine dinucleotide biosynthesis protein B (AAC76854.1); GTP-binding; molybdopterin-guanine dinucleotide biosynthesis protein MobB 4215783 mobB 588858004900 mobB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_005240256.1 4215268 R 588858 CDS YP_005240257.1 378452897 complement(4215780..4216364) 1 NC_016856.1 Links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4216364 mobA 588858004901 mobA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_005240257.1 4215780 R 588858 CDS YP_005240258.1 378452898 4216434..4216703 1 NC_016856.1 putative cytoplasmic protein 4216703 yihD 588858004902 yihD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240258.1 4216434 D 588858 CDS YP_005240259.1 378452899 4216780..4217766 1 NC_016856.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4217766 yihE 588858004903 yihE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S serine/threonine protein kinase YP_005240259.1 4216780 D 588858 CDS YP_005240260.1 378452900 4217783..4218406 1 NC_016856.1 thiol-disulfide interchange protein DabA precursor (SW:DSBA_SALTY); protein disulfide isomerase I 4218406 dsbA 588858004904 dsbA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S protein disulfide isomerase I YP_005240260.1 4217783 D 588858 CDS YP_005240261.1 378452901 complement(4218419..4219327) 1 NC_016856.1 similar to Escherichia coli putative endonuclease (AAC76860.1); putative endonuclease 4219327 yihG 588858004905 yihG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative endonuclease YP_005240261.1 4218419 R 588858 CDS YP_005240262.1 378452902 complement(4219525..4219656) 1 NC_016856.1 hypothetical protein 4219656 588858004906 STM14_4808 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240262.1 4219525 R 588858 CDS YP_005240263.1 378452903 4219715..4222501 1 NC_016856.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 4222501 polA 588858004907 polA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA polymerase I YP_005240263.1 4219715 D 588858 CDS YP_005240264.1 378452904 4222708..4222851 1 NC_016856.1 hypothetical protein 4222851 588858004909 STM14_4811 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240264.1 4222708 D 588858 CDS YP_005240265.1 378452905 complement(4222836..4223468) 1 NC_016856.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; GTPase EngB 4223468 yihA 588858004910 yihA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S GTPase EngB YP_005240265.1 4222836 R 588858 CDS YP_005240266.1 378452906 4223708..4223932 1 NC_016856.1 putative cytoplasmic protein 4223932 588858004911 STM14_4813 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240266.1 4223708 D 588858 CDS YP_005240267.1 378452907 4224051..4224566 1 NC_016856.1 hypothetical 19.2 kDa protein in polA-hemN intergenic region (SW:YIHI_SALTY); hypothetical protein 4224566 yihI 588858004912 yihI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240267.1 4224051 D 588858 CDS YP_005240268.1 378452908 4224755..4226128 1 NC_016856.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4226128 hemN 588858004913 hemN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S coproporphyrinogen III oxidase YP_005240268.1 4224755 D 588858 CDS YP_005240269.1 378452909 complement(4226121..4226246) 1 NC_016856.1 hypothetical protein 4226246 588858004914 STM14_4816 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240269.1 4226121 R 588858 CDS YP_005240270.1 378452910 complement(4226441..4227850) 1 NC_016856.1 response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; nitrogen regulation protein NR(I) 4227850 glnG 588858004915 glnG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrogen regulation protein NR(I) YP_005240270.1 4226441 R 588858 CDS YP_005240271.1 378452911 complement(4227859..4228908) 1 NC_016856.1 sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) 4228908 glnL 588858004916 glnL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nitrogen regulation protein NR(II) YP_005240271.1 4227859 R 588858 CDS YP_005240272.1 378452912 complement(4228860..4229039) 1 NC_016856.1 hypothetical protein 4229039 588858004917 STM14_4819 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240272.1 4228860 R 588858 CDS YP_005240273.1 378452913 complement(4229183..4230592) 1 NC_016856.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 4230592 glnA 588858004918 glnA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamine synthetase YP_005240273.1 4229183 R 588858 CDS YP_005240274.1 378452914 complement(4230571..4230990) 1 NC_016856.1 putative cytoplasmic protein 4230990 588858004919 STM14_4821 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240274.1 4230571 R 588858 CDS YP_005240275.1 378452915 4230968..4232791 1 NC_016856.1 similar to Escherichia coli putative GTP-binding factor (AAC76868.1); GTP-binding protein 4232791 typA 588858004920 typA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S GTP-binding protein YP_005240275.1 4230968 D 588858 CDS YP_005240276.1 378452916 complement(4232846..4233580) 1 NC_016856.1 similar to Escherichia coli putative phosphatase (AAC73853.1); putative hydrolase 4233580 588858004921 STM14_4823 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hydrolase YP_005240276.1 4232846 R 588858 CDS YP_005240277.1 378452917 complement(4233565..4234443) 1 NC_016856.1 putative inner membrane protein 4234443 588858004922 STM14_4824 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240277.1 4233565 R 588858 CDS YP_005240278.1 378452918 complement(4234440..4235681) 1 NC_016856.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4235681 588858004923 STM14_4825 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S coproporphyrinogen III oxidase YP_005240278.1 4234440 R 588858 CDS YP_005240279.1 378452919 complement(4235683..4236546) 1 NC_016856.1 putative membrane-associated metal-dependent hydrolase 4236546 588858004924 STM14_4826 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative membrane-associated metal-dependent hydrolase YP_005240279.1 4235683 R 588858 CDS YP_005240280.1 378452920 complement(4236551..4237576) 1 NC_016856.1 hypothetical protein 4237576 588858004925 STM14_4827 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240280.1 4236551 R 588858 CDS YP_005240281.1 378452921 complement(4237589..4238437) 1 NC_016856.1 putative cytoplasmic protein 4238437 588858004926 STM14_4828 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240281.1 4237589 R 588858 CDS YP_005240282.1 378452922 complement(4238594..4239286) 1 NC_016856.1 porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown; outer membrane porin L 4239286 yshA 588858004927 yshA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane porin L YP_005240282.1 4238594 R 588858 CDS YP_005240283.1 378452923 complement(4239354..4240775) 1 NC_016856.1 similar to Escherichia coli putative permease (AAC76873.1); GPH family transport protein 4240775 yihO 588858004928 yihO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S GPH family transport protein YP_005240283.1 4239354 R 588858 CDS YP_005240284.1 378452924 complement(4240821..4242203) 1 NC_016856.1 similar to Escherichia coli putative permease (AAC76874.1); GPH family transport protein 4242203 yihP 588858004929 yihP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S GPH family transport protein YP_005240284.1 4240821 R 588858 CDS YP_005240285.1 378452925 complement(4242249..4244285) 1 NC_016856.1 similar to Escherichia coli putative glycosidase (AAC76875.1); alpha-glucosidase 4244285 yihQ 588858004930 yihQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S alpha-glucosidase YP_005240285.1 4242249 R 588858 CDS YP_005240286.1 378452926 complement(4244329..4245180) 1 NC_016856.1 similar to Escherichia coli putative aldose-1-epimerase (AAC76876.1); putative aldose-1-epimerase 4245180 yihR 588858004931 yihR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative aldose-1-epimerase YP_005240286.1 4244329 R 588858 CDS YP_005240287.1 378452927 complement(4245190..4246431) 1 NC_016856.1 putative isomerase 4246431 yihS 588858004932 yihS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative isomerase YP_005240287.1 4245190 R 588858 CDS YP_005240288.1 378452928 complement(4246447..4247325) 1 NC_016856.1 similar to Escherichia coli putative aldolase (AAD13443.1); putative aldolase 4247325 yihT 588858004933 yihT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative aldolase YP_005240288.1 4246447 R 588858 CDS YP_005240289.1 378452929 complement(4247348..4248244) 1 NC_016856.1 similar to Escherichia coli putative dehydrogenase (AAD13444.1); putative oxidoreductase 4248244 yihU 588858004934 yihU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative oxidoreductase YP_005240289.1 4247348 R 588858 CDS YP_005240290.1 378452930 complement(4248232..4248351) 1 NC_016856.1 hypothetical protein 4248351 588858004935 STM14_4837 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240290.1 4248232 R 588858 CDS YP_005240291.1 378452931 4248403..4249305 1 NC_016856.1 similar to Escherichia coli putative kinase (AAD13445.1); putative sugar kinase 4249305 yihV 588858004936 yihV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sugar kinase YP_005240291.1 4248403 D 588858 CDS YP_005240292.1 378452932 4249339..4250142 1 NC_016856.1 similar to Escherichia coli putative DeoR-type transcriptional regulator (AAD13446.1); DeoR family; putative glycerol-3-phosphate regulon repressor 4250142 yihW 588858004937 yihW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glycerol-3-phosphate regulon repressor YP_005240292.1 4249339 D 588858 CDS YP_005240293.1 378452933 4250333..4250932 1 NC_016856.1 similar to Escherichia coli putative phosphatase (AAD13447.1); phosphatase 4250932 yihX 588858004938 yihX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphatase YP_005240293.1 4250333 D 588858 CDS YP_005240294.1 378452934 4250926..4251798 1 NC_016856.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 4251798 rbn 588858004939 rbn Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonuclease BN YP_005240294.1 4250926 D 588858 CDS YP_005240295.1 378452935 4251795..4252232 1 NC_016856.1 Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA deacylase 4252232 yihZ 588858004940 yihZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-tyrosyl-tRNA deacylase YP_005240295.1 4251795 D 588858 CDS YP_005240296.1 378452936 4252229..4253218 1 NC_016856.1 similar to Escherichia coli putative acetyltransferase (AAD13450.1); putative acetyltransferase 4253218 yiiD 588858004941 yiiD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative acetyltransferase YP_005240296.1 4252229 D 588858 CDS YP_005240297.1 378452937 complement(4253233..4253661) 1 NC_016856.1 putative cytoplasmic protein 4253661 588858004942 STM14_4844 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240297.1 4253233 R 588858 CDS YP_005240298.1 378452938 complement(4253676..4253987) 1 NC_016856.1 putative cytoplasmic protein 4253987 588858004943 STM14_4845 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240298.1 4253676 R 588858 CDS YP_005240299.1 378452939 complement(4254073..4255002) 1 NC_016856.1 similar to Escherichia coli putative lipase (AAC73578.1); putative acetyl esterase 4255002 588858004944 STM14_4846 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative acetyl esterase YP_005240299.1 4254073 R 588858 CDS YP_005240300.1 378452940 4255220..4255531 1 NC_016856.1 hypothetical protein 4255531 588858004945 STM14_4847 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240300.1 4255220 D 588858 CDS YP_005240301.1 378452941 4255532..4255822 1 NC_016856.1 merR family; putative regulatory protein 4255822 588858004946 STM14_4848 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005240301.1 4255532 D 588858 CDS YP_005240302.1 378452942 complement(4255869..4256798) 1 NC_016856.1 required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE 4256798 fdhE 588858004947 fdhE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S formate dehydrogenase accessory protein FdhE YP_005240302.1 4255869 R 588858 CDS YP_005240303.1 378452943 complement(4256795..4257430) 1 NC_016856.1 cytochrome b556(FDO) component; heme containing; formate dehydrogenase-O subunit gamma 4257430 fdoI 588858004948 fdoI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S formate dehydrogenase-O subunit gamma YP_005240303.1 4256795 R 588858 CDS YP_005240304.1 378452944 complement(4257427..4258329) 1 NC_016856.1 similar to Escherichia coli formate dehydrogenase-O iron-sulfur subunit (AAD13455.1); Fe-S subunit; formate dehydrogenase-O beta subunit 4258329 fdoH 588858004949 fdoH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S formate dehydrogenase-O beta subunit YP_005240304.1 4257427 R 588858 CDS YP_005240305.1 378452945 complement(4258342..4261392) 1 NC_016856.1 similar to Escherichia coli formate dehydrogenase-O major subunit (AAD13456.1); formate dehydrogenase alpha subunit 4261392 fdoG 588858004950 fdoG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S formate dehydrogenase alpha subunit YP_005240305.1 4258342 R 588858 CDS YP_005240306.1 378452946 4261587..4262423 1 NC_016856.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 4262423 fdhD 588858004951 fdhD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S formate dehydrogenase accessory protein YP_005240306.1 4261587 D 588858 CDS YP_005240307.1 378452947 complement(4262409..4262564) 1 NC_016856.1 hypothetical protein 4262564 588858004952 STM14_4854 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240307.1 4262409 R 588858 CDS YP_005240308.1 378452948 complement(4262691..4263722) 1 NC_016856.1 putative inner membrane lipoprotein 4263722 588858004953 STM14_4855 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane lipoprotein YP_005240308.1 4262691 R 588858 CDS YP_005240309.1 378452949 4263770..4263904 1 NC_016856.1 hypothetical protein 4263904 588858004954 STM14_4856 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240309.1 4263770 D 588858 CDS YP_005240310.1 378452950 4263947..4265005 1 NC_016856.1 putative cytoplasmic protein 4265005 yiiG 588858004955 yiiG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240310.1 4263947 D 588858 CDS YP_005240311.1 378452951 4265002..4265130 1 NC_016856.1 hypothetical protein 4265130 588858004956 STM14_4858 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240311.1 4265002 D 588858 CDS YP_005240312.1 378452952 complement(4265360..4265683) 1 NC_016856.1 putative inner membrane protein 4265683 588858004957 STM14_4859 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240312.1 4265360 R 588858 CDS YP_005240313.1 378452953 complement(4265683..4266342) 1 NC_016856.1 putative branched-chain amino acid permease 4266342 588858004958 STM14_4860 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative branched-chain amino acid permease YP_005240313.1 4265683 R 588858 CDS YP_005240314.1 378452954 4266425..4266991 1 NC_016856.1 hypothetical protein 4266991 588858004959 STM14_4861 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240314.1 4266425 D 588858 CDS YP_005240315.1 378452955 complement(4267080..4267394) 1 NC_016856.1 putative cytoplasmic protein 4267394 yiiL 588858004960 yiiL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240315.1 4267080 R 588858 CDS YP_005240316.2 410023218 complement(4267391..4268539) 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC76613.1); iron-containing; putative alcohol dehydrogenase 4268539 588858004961 STM14_4863 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative alcohol dehydrogenase YP_005240316.2 4267391 R 588858 CDS YP_005240317.1 378452957 complement(4268666..4269493) 1 NC_016856.1 similar to Escherichia coli rhamnulose-phosphate aldolase (AAC76884.1); rhamnulose-1-phosphate aldolase 4269493 rhaD 588858004962 rhaD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S rhamnulose-1-phosphate aldolase YP_005240317.1 4268666 R 588858 CDS YP_005240318.1 378452958 complement(4269636..4270895) 1 NC_016856.1 catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase 4270895 rhaA 588858004963 rhaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-rhamnose isomerase YP_005240318.1 4269636 R 588858 CDS YP_005240319.1 378452959 complement(4270892..4272361) 1 NC_016856.1 catalyzes the ATP-dependent phosphorylation of rhamnulose; rhamnulokinase 4272361 rhaB 588858004964 rhaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S rhamnulokinase YP_005240319.1 4270892 R 588858 CDS YP_005240320.1 378452960 4272347..4272496 1 NC_016856.1 hypothetical protein 4272496 588858004965 STM14_4867 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240320.1 4272347 D 588858 CDS YP_005240321.1 378452961 complement(4272426..4272560) 1 NC_016856.1 hypothetical protein 4272560 588858004966 STM14_4868 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240321.1 4272426 R 588858 CDS YP_005240322.1 378452962 4272649..4273485 1 NC_016856.1 activates the expression of the rhaBAD operon and rhaT gene; transcriptional activator RhaS 4273485 rhaS 588858004967 rhaS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional activator RhaS YP_005240322.1 4272649 D 588858 CDS YP_005240323.1 378452963 4273638..4274486 1 NC_016856.1 activates the expression of rhaRS in response to L-rhamnose; transcriptional activator RhaR 4274486 rhaR 588858004968 rhaR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional activator RhaR YP_005240323.1 4273638 D 588858 CDS YP_005240324.1 378452964 complement(4274483..4275517) 1 NC_016856.1 transports L-rhamnose and L-lyxose into the cell; rhamnose-proton symporter 4275517 rhaT 588858004969 rhaT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S rhamnose-proton symporter YP_005240324.1 4274483 R 588858 CDS YP_005240325.1 378452965 4275521..4275652 1 NC_016856.1 hypothetical protein 4275652 588858004970 STM14_4872 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240325.1 4275521 D 588858 CDS YP_005240326.1 378452966 4275986..4276111 1 NC_016856.1 hypothetical protein 4276111 588858004971 STM14_4873 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240326.1 4275986 D 588858 CDS YP_005240327.1 378452967 4276136..4276819 1 NC_016856.1 hypothetical 15.6 kDa protein in RhaT 5'region (SW:YIIY_SALTY); putative outer membrane protein 4276819 588858004972 STM14_4874 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005240327.1 4276136 D 588858 CDS YP_005240328.1 378452968 complement(4276977..4278284) 1 NC_016856.1 similar to Escherichia coli putative membrane protein (AAC76602.1); putative C4-dicarboxylate transport system 4278284 588858004973 STM14_4875 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative C4-dicarboxylate transport system YP_005240328.1 4276977 R 588858 CDS YP_005240329.1 378452969 complement(4278277..4278792) 1 NC_016856.1 putative C4-dicarboxylate transport system 4278792 588858004974 STM14_4876 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative C4-dicarboxylate transport system YP_005240329.1 4278277 R 588858 CDS YP_005240330.1 378452970 complement(4278811..4279794) 1 NC_016856.1 hypothetical protein in sodA 5'region (SW:YIIZ_SALTY); putative periplasmic dicarboxylate-binding protein 4279794 588858004975 STM14_4877 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative periplasmic dicarboxylate-binding protein YP_005240330.1 4278811 R 588858 CDS YP_005240331.1 378452971 4280123..4280743 1 NC_016856.1 SodA; manganese binding; only present under aerobic conditions; destroys free radicals; superoxide dismutase 4280743 sodA 588858004976 sodA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S superoxide dismutase YP_005240331.1 4280123 D 588858 CDS YP_005240332.1 378452972 4280813..4281502 1 NC_016856.1 hypothetical protein 4281502 yiiM 588858004977 yiiM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240332.1 4280813 D 588858 CDS YP_005240333.1 378452973 4281514..4281909 1 NC_016856.1 putative inner membrane protein 4281909 588858004978 STM14_4880 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240333.1 4281514 D 588858 CDS YP_005240334.1 378452974 complement(4281960..4283333) 1 NC_016856.1 part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein 4283333 cpxA 588858004979 cpxA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S two-component sensor protein YP_005240334.1 4281960 R 588858 CDS YP_005240335.1 378452975 complement(4283330..4284028) 1 NC_016856.1 response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; DNA-binding transcriptional regulator CpxR 4284028 cpxR 588858004980 cpxR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator CpxR YP_005240335.1 4283330 R 588858 CDS YP_005240336.1 378452976 4284179..4284679 1 NC_016856.1 repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; repressor CpxP 4284679 cpxP 588858004981 cpxP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S repressor CpxP YP_005240336.1 4284179 D 588858 CDS YP_005240337.1 378452977 4284827..4285729 1 NC_016856.1 member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; ferrous iron efflux protein F 4285729 fieF 588858004982 fieF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ferrous iron efflux protein F YP_005240337.1 4284827 D 588858 CDS YP_005240338.1 378452978 4285914..4286876 1 NC_016856.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 4286876 pfkA 588858004983 pfkA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 6-phosphofructokinase YP_005240338.1 4285914 D 588858 CDS YP_005240339.1 378452979 complement(4286951..4287055) 1 NC_016856.1 hypothetical protein 4287055 588858004984 STM14_4886 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240339.1 4286951 R 588858 CDS YP_005240340.1 378452980 4287080..4288069 1 NC_016856.1 sulfate-binding protein (SW:SUBI_SALTY); ABC superfamily binding protein; sulfate transporter subunit 4288069 sbp 588858004985 sbp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sulfate transporter subunit YP_005240340.1 4287080 D 588858 CDS YP_005240341.2 410023219 4288170..4288925 1 NC_016856.1 CDP-diacylglycerol pyrophosphatase (SW:CDH_SALTY); CDP-diacylglycerol pyrophosphatase 4288925 ushB 588858004986 ushB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S CDP-diacylglycerol pyrophosphatase YP_005240341.2 4288170 D 588858 CDS YP_005240342.1 378452982 4289188..4290522 1 NC_016856.1 putative Na+/galactoside symporter 4290522 588858004987 STM14_4889 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative Na+/galactoside symporter YP_005240342.1 4289188 D 588858 CDS YP_005240343.1 378452983 4290533..4291492 1 NC_016856.1 phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; aminoimidazole riboside kinase 4291492 588858004988 STM14_4890 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aminoimidazole riboside kinase YP_005240343.1 4290533 D 588858 CDS YP_005240344.1 378452984 4291502..4292542 1 NC_016856.1 putative ADP-ribosylglycohydrolase 4292542 588858004989 STM14_4891 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ADP-ribosylglycohydrolase YP_005240344.1 4291502 D 588858 CDS YP_005240345.1 378452985 4292605..4293327 1 NC_016856.1 similar to Escherichia coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1); GntR family; putative regulatory protein 4293327 588858004990 STM14_4892 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005240345.1 4292605 D 588858 CDS YP_005240346.1 378452986 4293425..4293589 1 NC_016856.1 hypothetical protein 4293589 588858004991 STM14_4893 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240346.1 4293425 D 588858 CDS YP_005240347.1 378452987 4293605..4293736 1 NC_016856.1 similar to Escherichia coli CDP-diacylglycerol phosphotidylhydrolase (AAC76900.1); putative cytoplasmic protein 4293736 588858004992 STM14_4894 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240347.1 4293605 D 588858 CDS YP_005240348.1 378452988 complement(4293826..4294176) 1 NC_016856.1 putative mannose-6-phosphate isomerase 4294176 588858004993 STM14_4895 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative mannose-6-phosphate isomerase YP_005240348.1 4293826 R 588858 CDS YP_005240349.1 378452989 complement(4294190..4295782) 1 NC_016856.1 similar to Escherichia coli putative kinase (AAC74584.1); autoinducer-2 (AI-2) kinase 4295782 ydeV 588858004994 ydeV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S autoinducer-2 (AI-2) kinase YP_005240349.1 4294190 R 588858 CDS YP_005240350.1 378452990 complement(4295871..4296830) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator, sorC family (AAC74585.1); putative transcriptional repressor 4296830 ydeW 588858004995 ydeW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional repressor YP_005240350.1 4295871 R 588858 CDS YP_005240351.1 378452991 complement(4296957..4297091) 1 NC_016856.1 hypothetical protein 4297091 588858004996 STM14_4898 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240351.1 4296957 R 588858 CDS YP_005240352.1 378452992 4297086..4298621 1 NC_016856.1 similar to Escherichia coli putative ATP-binding component of a transport system (AAC74586.1); putative ABC-type aldose transport system ATPase component 4298621 ego 588858004997 ego Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type aldose transport system ATPase component YP_005240352.1 4297086 D 588858 CDS YP_005240353.1 378452993 4298615..4299658 1 NC_016856.1 similar to Escherichia coli putative transport system permease protein (AAC74587.1); putative ABC superfamily membrane protein; putative sugar transport protein 4299658 ydeY 588858004998 ydeY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sugar transport protein YP_005240353.1 4298615 D 588858 CDS YP_005240354.1 378452994 4299655..4300656 1 NC_016856.1 similar to Escherichia coli putative transport system permease protein (AAC74588.1); putative ABC superfamily membrane protein; putative sugar transport protein 4300656 ydeZ 588858004999 ydeZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sugar transport protein YP_005240354.1 4299655 D 588858 CDS YP_005240355.1 378452995 4300685..4301707 1 NC_016856.1 similar to Escherichia coli putative LacI-type transcriptional regulator (AAC74589.1); putative ABC superfamily periplasmic protein; putative sugar transport protein 4301707 yneA 588858005000 yneA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sugar transport protein YP_005240355.1 4300685 D 588858 CDS YP_005240356.1 378452996 4301736..4302611 1 NC_016856.1 aldolase 4302611 yneB 588858005001 yneB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aldolase YP_005240356.1 4301736 D 588858 CDS YP_005240357.1 378452997 4302691..4302984 1 NC_016856.1 autoinducer-2 (AI-2) modifying protein LsrG 4302984 yneC 588858005002 yneC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S autoinducer-2 (AI-2) modifying protein LsrG YP_005240357.1 4302691 D 588858 CDS YP_005240358.1 378452998 4302994..4303758 1 NC_016856.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 4303758 588858005003 STM14_4905 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribulose-phosphate 3-epimerase YP_005240358.1 4302994 D 588858 CDS YP_005240359.1 378452999 complement(4303850..4304617) 1 NC_016856.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 4304617 tpiA 588858005004 tpiA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S triosephosphate isomerase YP_005240359.1 4303850 R 588858 CDS YP_005240360.1 378453000 complement(4304730..4305326) 1 NC_016856.1 hypothetical protein 4305326 yiiQ 588858005005 yiiQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240360.1 4304730 R 588858 CDS YP_005240361.1 378453001 4305427..4305855 1 NC_016856.1 putative inner membrane protein 4305855 yiiR 588858005006 yiiR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240361.1 4305427 D 588858 CDS YP_005240362.1 378453002 complement(4305795..4305962) 1 NC_016856.1 hypothetical protein 4305962 588858005007 STM14_4909 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240362.1 4305795 R 588858 CDS YP_005240363.1 378453003 complement(4305962..4306708) 1 NC_016856.1 similar to Escherichia coli ferredoxin-NADP reductase (AAC76906.1); ferredoxin-NADP reductase 4306708 fpr 588858005008 fpr Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ferredoxin-NADP reductase YP_005240363.1 4305962 R 588858 CDS YP_005240364.1 378453004 complement(4306805..4307905) 1 NC_016856.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 4307905 glpX 588858005009 glpX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fructose 1,6-bisphosphatase II YP_005240364.1 4306805 R 588858 CDS YP_005240365.1 378453005 complement(4307927..4309435) 1 NC_016856.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 4309435 glpK 588858005010 glpK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycerol kinase YP_005240365.1 4307927 R 588858 CDS YP_005240366.1 378453006 complement(4309456..4310301) 1 NC_016856.1 similar to Escherichia coli facilitated diffusion of glycerol (AAC76909.1); MIP channel; glycerol diffusion 4310301 glpF 588858005011 glpF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycerol diffusion YP_005240366.1 4309456 R 588858 CDS YP_005240367.1 378453007 4310547..4310666 1 NC_016856.1 hypothetical protein 4310666 588858005012 STM14_4914 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240367.1 4310547 D 588858 CDS YP_005240368.1 378453008 4310700..4310939 1 NC_016856.1 putative cytoplasmic protein 4310939 yiiU 588858005013 yiiU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240368.1 4310700 D 588858 CDS YP_005240369.1 378453009 complement(4311024..4311164) 1 NC_016856.1 hypothetical protein 4311164 588858005014 STM14_4916 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240369.1 4311024 R 588858 CDS YP_005240370.1 378453010 complement(4311161..4311646) 1 NC_016856.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4311646 menG 588858005015 menG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribonuclease activity regulator protein RraA YP_005240370.1 4311161 R 588858 CDS YP_005240371.1 378453011 complement(4311739..4312668) 1 NC_016856.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 4312668 menA 588858005016 menA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_005240371.1 4311739 R 588858 CDS YP_005240372.1 378453012 complement(4312735..4314066) 1 NC_016856.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit 4314066 hslU 588858005017 hslU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-dependent protease ATP-binding subunit YP_005240372.1 4312735 R 588858 CDS YP_005240373.1 378453013 complement(4314076..4314606) 1 NC_016856.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4314606 hslV 588858005018 hslV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ATP-dependent protease peptidase subunit YP_005240373.1 4314076 R 588858 CDS YP_005240374.1 378453014 complement(4314698..4315672) 1 NC_016856.1 similar to Escherichia coli essential cell division protein (AAC76915.1); essential cell division protein 4315672 ftsN 588858005019 ftsN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S essential cell division protein YP_005240374.1 4314698 R 588858 CDS YP_005240375.1 378453015 complement(4315766..4316956) 1 NC_016856.1 negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; DNA-binding transcriptional regulator CytR 4316956 cytR 588858005020 cytR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator CytR YP_005240375.1 4315766 R 588858 CDS YP_005240376.1 378453016 complement(4316946..4319144) 1 NC_016856.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 4319144 priA 588858005021 priA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S primosome assembly protein PriA YP_005240376.1 4316946 R 588858 CDS YP_005240377.1 378453017 4319348..4319560 1 NC_016856.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 4319560 rpmE 588858005022 rpmE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L31 YP_005240377.1 4319348 D 588858 CDS YP_005240378.1 378453018 complement(4319606..4320268) 1 NC_016856.1 putative outer membrane lipoprotein 4320268 588858005023 STM14_4925 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005240378.1 4319606 R 588858 CDS YP_005240379.1 378453019 complement(4320469..4322259) 1 NC_016856.1 putative arylsulfate sulfotransferase 4322259 588858005024 STM14_4926 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative arylsulfate sulfotransferase YP_005240379.1 4320469 R 588858 CDS YP_005240380.1 378453020 complement(4322716..4323033) 1 NC_016856.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 4323033 metJ 588858005025 metJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional repressor protein MetJ YP_005240380.1 4322716 R 588858 CDS YP_005240381.1 378453021 4323157..4324458 1 NC_016856.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 4324458 metB 588858005026 metB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cystathionine gamma-synthase YP_005240381.1 4323157 D 588858 CDS YP_005240382.1 378453022 4324461..4326893 1 NC_016856.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 4326893 metL 588858005027 metL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional aspartate kinase II/homoserine dehydrogenase II YP_005240382.1 4324461 D 588858 CDS YP_005240383.1 378453023 complement(4327009..4327866) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC75961.1); putative inner membrane protein 4327866 588858005028 STM14_4930 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240383.1 4327009 R 588858 CDS YP_005240384.1 378453024 complement(4327869..4328867) 1 NC_016856.1 hypothetical protein 4328867 588858005029 STM14_4931 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240384.1 4327869 R 588858 CDS YP_005240385.1 378453025 complement(4329102..4330226) 1 NC_016856.1 putative cytoplasmic protein 4330226 588858005030 STM14_4932 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240385.1 4329102 R 588858 CDS YP_005240386.1 378453026 4330362..4331918 1 NC_016856.1 similar to Escherichia coli UDP-sugar hydrolase (AAC73582.1); similar to esterase; putative 5'-nucleotidase/2',3'-cyclic phosphodiesterase 4331918 588858005031 STM14_4933 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative 5'-nucleotidase/2',3'-cyclic phosphodiesterase YP_005240386.1 4330362 D 588858 CDS YP_005240387.1 378453027 complement(4332008..4332127) 1 NC_016856.1 hypothetical protein 4332127 588858005032 STM14_4934 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240387.1 4332008 R 588858 CDS YP_005240388.1 378453028 4332113..4333003 1 NC_016856.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 4333003 metF 588858005033 metF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 5,10-methylenetetrahydrofolate reductase YP_005240388.1 4332113 D 588858 CDS YP_005240389.1 378453029 4333168..4335348 1 NC_016856.1 peroxidase/catalase HPI (SW:CATA_SALTY); hydroperoxidase 4335348 katG 588858005034 katG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydroperoxidase YP_005240389.1 4333168 D 588858 CDS YP_005240390.1 378453030 complement(4335406..4336029) 1 NC_016856.1 hypothetical protein 4336029 yijF 588858005035 yijF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240390.1 4335406 R 588858 CDS YP_005240391.1 378453031 4336017..4336178 1 NC_016856.1 hypothetical protein 4336178 588858005036 STM14_4938 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240391.1 4336017 D 588858 CDS YP_005240392.1 378453032 complement(4336288..4337391) 1 NC_016856.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 4337391 gldA_2 588858005037 gldA_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycerol dehydrogenase YP_005240392.1 4336288 R 588858 CDS YP_005240393.1 378453033 complement(4337403..4338065) 1 NC_016856.1 similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase 4338065 talC 588858005038 talC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fructose-6-phosphate aldolase YP_005240393.1 4337403 R 588858 CDS YP_005240394.1 378453034 complement(4338076..4340577) 1 NC_016856.1 similar to Escherichia coli PEP-protein phosphotransferase system enzyme I (AAC76929.1); general PTS family; enzyme I; PEP-protein phosphotransferase 4340577 ptsA 588858005039 ptsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S PEP-protein phosphotransferase YP_005240394.1 4338076 R 588858 CDS YP_005240395.1 378453035 complement(4340772..4340927) 1 NC_016856.1 hypothetical protein 4340927 588858005041 STM14_4943 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240395.1 4340772 R 588858 CDS YP_005240396.1 378453036 4340886..4341965 1 NC_016856.1 FrwC with FrwB, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; forms translocation channel and contains the specific substrate-binding site; putative fructose-like permease EIIC subunit 2 4341965 frwC 588858005042 frwC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fructose-like permease EIIC subunit 2 YP_005240396.1 4340886 D 588858 CDS YP_005240397.1 378453037 4341980..4342300 1 NC_016856.1 FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS; putative fructose-like phosphotransferase EIIB subunit 2 4342300 frwB 588858005043 frwB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fructose-like phosphotransferase EIIB subunit 2 YP_005240397.1 4341980 D 588858 CDS YP_005240398.1 378453038 4342399..4344696 1 NC_016856.1 involved in production of D-lactate from glucose under microaerobic conditions; cytoplasmic protein; putative formate acetyltransferase 2 4344696 pflD 588858005044 pflD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative formate acetyltransferase 2 YP_005240398.1 4342399 D 588858 CDS YP_005240399.1 378453039 4344662..4345540 1 NC_016856.1 similar to Escherichia coli probable pyruvate formate lyase activating enzyme 2 (AAC76934.1); pyruvate formate lyase II activase 4345540 pflC 588858005045 pflC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyruvate formate lyase II activase YP_005240399.1 4344662 D 588858 CDS YP_005240400.1 378453040 4345542..4345895 1 NC_016856.1 FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog; putative fructose-like phosphotransferase EIIB subunit 3 4345895 frwD 588858005046 frwD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fructose-like phosphotransferase EIIB subunit 3 YP_005240400.1 4345542 D 588858 CDS YP_005240401.1 378453041 complement(4345882..4346733) 1 NC_016856.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC76936.1); AraC/XylS family; putative regulatory protein 4346733 yijO 588858005047 yijO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005240401.1 4345882 R 588858 CDS YP_005240402.1 378453042 4346732..4346872 1 NC_016856.1 hypothetical protein 4346872 588858005048 STM14_4950 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240402.1 4346732 D 588858 CDS YP_005240403.1 378453043 4346784..4346900 1 NC_016856.1 hypothetical protein 4346900 588858005049 STM14_4951 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240403.1 4346784 D 588858 CDS YP_005240404.1 378453044 complement(4346894..4348627) 1 NC_016856.1 hypothetical protein 4348627 yijP 588858005050 yijP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240404.1 4346894 R 588858 CDS YP_005240405.1 378453045 4348703..4348810 1 NC_016856.1 hypothetical protein 4348810 588858005051 STM14_4953 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240405.1 4348703 D 588858 CDS YP_005240406.1 378453046 complement(4348838..4351489) 1 NC_016856.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4351489 ppc 588858005052 ppc Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoenolpyruvate carboxylase YP_005240406.1 4348838 R 588858 CDS YP_005240407.1 378453047 complement(4351858..4353009) 1 NC_016856.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 4353009 argE 588858005053 argE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acetylornithine deacetylase YP_005240407.1 4351858 R 588858 CDS YP_005240408.1 378453048 4353098..4354102 1 NC_016856.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 4354102 argC 588858005054 argC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N-acetyl-gamma-glutamyl-phosphate reductase YP_005240408.1 4353098 D 588858 CDS YP_005240409.1 378453049 4354113..4354886 1 NC_016856.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4354886 argB 588858005055 argB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acetylglutamate kinase YP_005240409.1 4354113 D 588858 CDS YP_005240410.1 378453050 4355004..4356380 1 NC_016856.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 4356380 argH 588858005056 argH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S argininosuccinate lyase YP_005240410.1 4355004 D 588858 CDS YP_005240411.1 378453051 4356665..4357582 1 NC_016856.1 Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR 4357582 oxyR 588858005057 oxyR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator OxyR YP_005240411.1 4356665 D 588858 CDS YP_005240412.1 378453052 complement(4357565..4358965) 1 NC_016856.1 catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 4358965 udhA 588858005058 udhA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S soluble pyridine nucleotide transhydrogenase YP_005240412.1 4357565 R 588858 CDS YP_005240413.1 378453053 complement(4358974..4359162) 1 NC_016856.1 hypothetical protein 4359162 588858005059 STM14_4961 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240413.1 4358974 R 588858 CDS YP_005240414.1 378453054 4359164..4359799 1 NC_016856.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 4359799 yijC 588858005060 yijC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional repressor FabR YP_005240414.1 4359164 D 588858 CDS YP_005240415.1 378453055 4359815..4360174 1 NC_016856.1 hypothetical protein 4360174 yijD 588858005061 yijD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240415.1 4359815 D 588858 CDS YP_005240416.1 378453056 complement(4360221..4361321) 1 NC_016856.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 4361321 trmA 588858005062 trmA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tRNA (uracil-5-)-methyltransferase YP_005240416.1 4360221 R 588858 CDS YP_005240417.1 378453057 4361695..4363539 1 NC_016856.1 involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; vitamin B12/cobalamin outer membrane transporter 4363539 btuB 588858005063 btuB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S vitamin B12/cobalamin outer membrane transporter YP_005240417.1 4361695 D 588858 CDS YP_005240418.1 378453058 4363484..4364335 1 NC_016856.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 4364335 murI 588858005064 murI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamate racemase YP_005240418.1 4363484 D 588858 CDS YP_005240419.1 378453059 4366598..4366714 1 NC_016856.1 hypothetical protein 4366714 588858005068 STM14_4970 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240419.1 4366598 D 588858 CDS YP_005240420.1 378453060 4370253..4371281 1 NC_016856.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4371281 murB 588858005071 murB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UDP-N-acetylenolpyruvoylglucosamine reductase YP_005240420.1 4370253 D 588858 CDS YP_005240421.1 378453061 4371278..4372240 1 NC_016856.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 4372240 birA 588858005072 birA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S biotin--protein ligase YP_005240421.1 4371278 D 588858 CDS YP_005240422.1 378453062 complement(4372275..4373225) 1 NC_016856.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 4373225 coaA 588858005073 coaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pantothenate kinase YP_005240422.1 4372275 R 588858 CDS YP_005240423.1 378453063 complement(4373434..4373607) 1 NC_016856.1 putative cytoplasmic protein 4373607 588858005075 STM14_4977 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240423.1 4373434 R 588858 CDS YP_005240424.1 378453064 4374184..4375368 1 NC_016856.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 4375368 tuf_2 588858005080 tuf_2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S elongation factor Tu YP_005240424.1 4374184 D 588858 CDS YP_005240425.1 378453065 4375382..4375510 1 NC_016856.1 hypothetical protein 4375510 588858005081 STM14_4983 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240425.1 4375382 D 588858 CDS YP_005240426.1 378453066 4375598..4375981 1 NC_016856.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 4375981 secE 588858005082 secE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S preprotein translocase subunit SecE YP_005240426.1 4375598 D 588858 CDS YP_005240427.1 378453067 4375983..4376528 1 NC_016856.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 4376528 nusG 588858005083 nusG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcription antitermination protein NusG YP_005240427.1 4375983 D 588858 CDS YP_005240428.1 378453068 4376686..4377114 1 NC_016856.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 4377114 rplK 588858005084 rplK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L11 YP_005240428.1 4376686 D 588858 CDS YP_005240429.1 378453069 4377118..4377822 1 NC_016856.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 4377822 rplA 588858005085 rplA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L1 YP_005240429.1 4377118 D 588858 CDS YP_005240430.1 378453070 4378242..4378739 1 NC_016856.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4378739 rplJ 588858005086 rplJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L10 YP_005240430.1 4378242 D 588858 CDS YP_005240431.1 378453071 4378806..4379171 1 NC_016856.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 4379171 rplL 588858005087 rplL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L7/L12 YP_005240431.1 4378806 D 588858 CDS YP_005240432.1 378453072 4379489..4383517 1 NC_016856.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4383517 rpoB 588858005088 rpoB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-directed RNA polymerase subunit beta YP_005240432.1 4379489 D 588858 CDS YP_005240433.1 378453073 4383594..4387817 1 NC_016856.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4387817 rpoC 588858005089 rpoC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-directed RNA polymerase subunit beta' YP_005240433.1 4383594 D 588858 CDS YP_005240434.1 378453074 4387859..4388182 1 NC_016856.1 putative inner membrane protein 4388182 588858005090 STM14_4992 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240434.1 4387859 D 588858 CDS YP_005240435.1 378453075 complement(4388188..4388532) 1 NC_016856.1 putative cytoplasmic protein 4388532 588858005091 STM14_4993 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240435.1 4388188 R 588858 CDS YP_005240436.1 378453076 complement(4388486..4388623) 1 NC_016856.1 hypothetical protein 4388623 588858005092 STM14_4994 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240436.1 4388486 R 588858 CDS YP_005240437.1 378453077 4388644..4388847 1 NC_016856.1 hypothetical protein 4388847 588858005093 STM14_4995 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240437.1 4388644 D 588858 CDS YP_005240438.1 378453078 4388931..4389941 1 NC_016856.1 putative cytoplasmic protein 4389941 588858005094 STM14_4996 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240438.1 4388931 D 588858 CDS YP_005240439.1 378453079 4389931..4390140 1 NC_016856.1 hypothetical protein 4390140 588858005095 STM14_4997 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240439.1 4389931 D 588858 CDS YP_005240440.1 378453080 4390264..4390452 1 NC_016856.1 putative cytoplasmic protein 4390452 588858005097 STM14_4999 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240440.1 4390264 D 588858 CDS YP_005240441.1 378453081 complement(4390603..4391736) 1 NC_016856.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 4391736 thiH 588858005098 thiH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiamine biosynthesis protein ThiH YP_005240441.1 4390603 R 588858 CDS YP_005240442.1 378453082 complement(4391733..4392503) 1 NC_016856.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 4392503 thiG 588858005099 thiG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiazole synthase YP_005240442.1 4391733 R 588858 CDS YP_005240443.1 378453083 complement(4392505..4392705) 1 NC_016856.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS 4392705 588858005100 STM14_5002 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sulfur carrier protein ThiS YP_005240443.1 4392505 R 588858 CDS YP_005240444.1 378453084 complement(4392686..4393444) 1 NC_016856.1 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF 4393444 thiF 588858005101 thiF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiamine biosynthesis protein ThiF YP_005240444.1 4392686 R 588858 CDS YP_005240445.1 378453085 complement(4393437..4394072) 1 NC_016856.1 catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase 4394072 thiE 588858005102 thiE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiamine-phosphate pyrophosphorylase YP_005240445.1 4393437 R 588858 CDS YP_005240446.1 378453086 complement(4394072..4395967) 1 NC_016856.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 4395967 thiC 588858005103 thiC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiamine biosynthesis protein ThiC YP_005240446.1 4394072 R 588858 CDS YP_005240447.1 378453087 complement(4396331..4396819) 1 NC_016856.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 4396819 rsd 588858005104 rsd Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S anti-RNA polymerase sigma 70 factor YP_005240447.1 4396331 R 588858 CDS YP_005240448.1 378453088 4396912..4397685 1 NC_016856.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 4397685 nudC 588858005105 nudC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NADH pyrophosphatase YP_005240448.1 4396912 D 588858 CDS YP_005240449.1 378453089 4397726..4398790 1 NC_016856.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 4398790 hemE 588858005106 hemE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S uroporphyrinogen decarboxylase YP_005240449.1 4397726 D 588858 CDS YP_005240450.1 378453090 4398800..4399471 1 NC_016856.1 Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures; endonuclease V 4399471 nfi 588858005107 nfi Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S endonuclease V YP_005240450.1 4398800 D 588858 CDS YP_005240451.1 378453091 4399513..4400103 1 NC_016856.1 putative cytoplasmic protein 4400103 yjaG 588858005108 yjaG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240451.1 4399513 D 588858 CDS YP_005240452.1 378453092 4400290..4400562 1 NC_016856.1 histone-like DNA-binding protein; transcriptional regulator HU subunit alpha 4400562 hupA 588858005109 hupA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator HU subunit alpha YP_005240452.1 4400290 D 588858 CDS YP_005240453.1 378453093 4400574..4401266 1 NC_016856.1 putative inner membrane protein 4401266 yjaH 588858005110 yjaH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240453.1 4400574 D 588858 CDS YP_005240454.1 378453094 complement(4401308..4401763) 1 NC_016856.1 zinc resistance protein 4401763 zraP 588858005111 zraP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S zinc resistance protein YP_005240454.1 4401308 R 588858 CDS YP_005240455.1 378453095 4401933..4403414 1 NC_016856.1 sensor protein HydA (SW:HYDH_SALTY); in two component regulatory system with HydG; sensor protein ZraS 4403414 hydH 588858005112 hydH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sensor protein ZraS YP_005240455.1 4401933 D 588858 CDS YP_005240456.1 378453096 4403420..4404745 1 NC_016856.1 DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; transcriptional regulatory protein ZraR 4404745 hydG 588858005113 hydG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulatory protein ZraR YP_005240456.1 4403420 D 588858 CDS YP_005240457.1 378453097 complement(4404742..4406031) 1 NC_016856.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 4406031 purD 588858005114 purD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoribosylamine--glycine ligase YP_005240457.1 4404742 R 588858 CDS YP_005240458.1 378453098 complement(4406043..4407632) 1 NC_016856.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4407632 purH 588858005115 purH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_005240458.1 4406043 R 588858 CDS YP_005240459.1 378453099 4407683..4407805 1 NC_016856.1 hypothetical protein 4407805 588858005116 STM14_5018 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240459.1 4407683 D 588858 CDS YP_005240460.1 378453100 complement(4407796..4407918) 1 NC_016856.1 hypothetical protein 4407918 588858005117 STM14_5019 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240460.1 4407796 R 588858 CDS YP_005240461.1 378453101 4407851..4407991 1 NC_016856.1 hypothetical protein 4407991 588858005118 STM14_5020 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240461.1 4407851 D 588858 CDS YP_005240462.1 378453102 complement(4413499..4413630) 1 NC_016856.1 hypothetical protein 4413630 588858005123 STM14_5025 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240462.1 4413499 R 588858 CDS YP_005240463.1 378453103 4413565..4413795 1 NC_016856.1 hypothetical protein 4413795 588858005124 STM14_5026 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240463.1 4413565 D 588858 CDS YP_005240464.1 378453104 complement(4413786..4414223) 1 NC_016856.1 hypothetical protein in rrfE-metA intergenic region (SW:YJAB_SALTY); hypothetical protein 4414223 yjaB 588858005125 yjaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240464.1 4413786 R 588858 CDS YP_005240465.1 378453105 4414380..4415309 1 NC_016856.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 4415309 metA 588858005126 metA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S homoserine O-succinyltransferase YP_005240465.1 4414380 D 588858 CDS YP_005240466.1 378453106 4415578..4417179 1 NC_016856.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4417179 aceB 588858005127 aceB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S malate synthase YP_005240466.1 4415578 D 588858 CDS YP_005240467.1 378453107 4417211..4418515 1 NC_016856.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 4418515 aceA 588858005128 aceA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S isocitrate lyase YP_005240467.1 4417211 D 588858 CDS YP_005240468.1 378453108 4418519..4418641 1 NC_016856.1 hypothetical protein 4418641 588858005129 STM14_5031 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240468.1 4418519 D 588858 CDS YP_005240469.1 378453109 4418617..4420368 1 NC_016856.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 4420368 aceK 588858005130 aceK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional isocitrate dehydrogenase kinase/phosphatase protein YP_005240469.1 4418617 D 588858 CDS YP_005240470.1 378453110 complement(4420332..4420739) 1 NC_016856.1 putative cytoplasmic protein 4420739 588858005131 STM14_5033 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240470.1 4420332 R 588858 CDS YP_005240471.1 378453111 complement(4420750..4421574) 1 NC_016856.1 regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; IclR family transcriptional regulator 4421574 iclR 588858005132 iclR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S IclR family transcriptional regulator YP_005240471.1 4420750 R 588858 CDS YP_005240472.1 378453112 4421773..4425561 1 NC_016856.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4425561 metH 588858005133 metH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S B12-dependent methionine synthase YP_005240472.1 4421773 D 588858 CDS YP_005240473.1 378453113 4425828..4427459 1 NC_016856.1 hypothetical protein in metH-pepE intergenic region (SW:YJBB_SALTY); PNaS family; putative transport protein 4427459 yjbB 588858005134 yjbB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005240473.1 4425828 D 588858 CDS YP_005240474.1 378453114 complement(4427535..4428224) 1 NC_016856.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 4428224 pepE 588858005135 pepE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptidase E YP_005240474.1 4427535 R 588858 CDS YP_005240475.1 378453115 4428296..4428397 1 NC_016856.1 putative cytoplasmic protein 4428397 588858005136 STM14_5038 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240475.1 4428296 D 588858 CDS YP_005240476.1 378453116 4428432..4428971 1 NC_016856.1 similar to Escherichia coli nucleoprotein/polynucleotide-associated enzyme (AAC73457.1); putative cytoplasmic protein 4428971 588858005137 STM14_5039 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240476.1 4428432 D 588858 CDS YP_005240477.1 378453117 4429018..4429887 1 NC_016856.1 catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; 23S rRNA pseudouridine synthase F 4429887 yjbC 588858005138 yjbC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 23S rRNA pseudouridine synthase F YP_005240477.1 4429018 D 588858 CDS YP_005240478.1 378453118 complement(4429884..4430156) 1 NC_016856.1 hypothetical protein 4430156 yjbD 588858005139 yjbD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240478.1 4429884 R 588858 CDS YP_005240479.1 378453119 complement(4430254..4430427) 1 NC_016856.1 putative Na+-dependent transporter 4430427 588858005140 STM14_5042 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative Na+-dependent transporter YP_005240479.1 4430254 R 588858 CDS YP_005240480.1 378453120 4431313..4431468 1 NC_016856.1 hypothetical protein 4431468 588858005142 STM14_5044 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240480.1 4431313 D 588858 CDS YP_005240481.1 378453121 complement(4431457..4432185) 1 NC_016856.1 putative cytoplasmic protein 4432185 588858005143 STM14_5045 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240481.1 4431457 R 588858 CDS YP_005240482.1 378453122 complement(4432382..4432672) 1 NC_016856.1 putative inner membrane protein 4432672 588858005144 STM14_5046 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240482.1 4432382 R 588858 CDS YP_005240483.1 378453123 complement(4432921..4433376) 1 NC_016856.1 putative cytoplasmic protein 4433376 588858005145 STM14_5047 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240483.1 4432921 R 588858 CDS YP_005240484.1 378453124 complement(4433373..4433978) 1 NC_016856.1 putative cytoplasmic protein 4433978 588858005146 STM14_5048 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240484.1 4433373 R 588858 CDS YP_005240485.1 378453125 complement(4433983..4435728) 1 NC_016856.1 similar to Escherichia coli putative membrane protein (AAC74454.1); putative phage tail fiber protein H 4435728 588858005147 STM14_5049 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phage tail fiber protein H YP_005240485.1 4433983 R 588858 CDS YP_005240486.1 378453126 complement(4435731..4436363) 1 NC_016856.1 putative phage tail protein 4436363 588858005148 STM14_5050 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phage tail protein YP_005240486.1 4435731 R 588858 CDS YP_005240487.1 378453127 complement(4436356..4437471) 1 NC_016856.1 putative phage baseplate protein 4437471 588858005149 STM14_5051 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phage baseplate protein YP_005240487.1 4436356 R 588858 CDS YP_005240488.1 378453128 complement(4437462..4437821) 1 NC_016856.1 putative phage baseplate protein 4437821 588858005150 STM14_5052 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phage baseplate protein YP_005240488.1 4437462 R 588858 CDS YP_005240489.1 378453129 4437882..4438004 1 NC_016856.1 hypothetical protein 4438004 588858005151 STM14_5053 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240489.1 4437882 D 588858 CDS YP_005240490.1 378453130 complement(4437985..4439532) 1 NC_016856.1 putative inner membrane protein 4439532 588858005152 STM14_5054 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240490.1 4437985 R 588858 CDS YP_005240491.1 378453131 complement(4439532..4440461) 1 NC_016856.1 similar to Escherichia coli putative glycan biosynthesis enzyme (AAC75410.1); putative phage glycosyltransferase 4440461 588858005153 STM14_5055 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phage glycosyltransferase YP_005240491.1 4439532 R 588858 CDS YP_005240492.1 378453132 complement(4440458..4440820) 1 NC_016856.1 putative phage glucose translocase 4440820 588858005154 STM14_5056 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phage glucose translocase YP_005240492.1 4440458 R 588858 CDS YP_005240493.1 378453133 complement(4441014..4441139) 1 NC_016856.1 hypothetical protein 4441139 588858005155 STM14_5057 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240493.1 4441014 R 588858 CDS YP_005240494.1 378453134 complement(4441148..4441870) 1 NC_016856.1 putative phage baseplate component 4441870 588858005156 STM14_5058 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phage baseplate component YP_005240494.1 4441148 R 588858 CDS YP_005240495.1 378453135 complement(4441880..4442923) 1 NC_016856.1 putative cytoplasmic protein 4442923 588858005157 STM14_5059 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240495.1 4441880 R 588858 CDS YP_005240496.1 378453136 complement(4442911..4443120) 1 NC_016856.1 putative inner membrane protein 4443120 588858005158 STM14_5060 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240496.1 4442911 R 588858 CDS YP_005240497.1 378453137 complement(4443120..4444073) 1 NC_016856.1 putative methyl-accepting chemotaxis protein 4444073 588858005159 STM14_5061 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative methyl-accepting chemotaxis protein YP_005240497.1 4443120 R 588858 CDS YP_005240498.1 378453138 complement(4444073..4446427) 1 NC_016856.1 putative phage tail protein 4446427 588858005160 STM14_5062 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phage tail protein YP_005240498.1 4444073 R 588858 CDS YP_005240499.1 378453139 complement(4446524..4446652) 1 NC_016856.1 hypothetical protein 4446652 588858005161 STM14_5063 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240499.1 4446524 R 588858 CDS YP_005240500.1 378453140 complement(4446981..4447505) 1 NC_016856.1 putative phage tail core protein 4447505 588858005163 STM14_5065 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phage tail core protein YP_005240500.1 4446981 R 588858 CDS YP_005240501.1 378453141 complement(4447505..4448932) 1 NC_016856.1 putative phage tail sheath protein 4448932 588858005164 STM14_5066 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phage tail sheath protein YP_005240501.1 4447505 R 588858 CDS YP_005240502.1 378453142 complement(4448922..4449119) 1 NC_016856.1 putative cytoplasmic protein 4449119 588858005165 STM14_5067 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240502.1 4448922 R 588858 CDS YP_005240503.1 378453143 complement(4449116..4449571) 1 NC_016856.1 putative cytoplasmic protein 4449571 588858005166 STM14_5068 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240503.1 4449116 R 588858 CDS YP_005240504.1 378453144 complement(4449731..4450045) 1 NC_016856.1 putative inner membrane protein 4450045 588858005167 STM14_5069 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240504.1 4449731 R 588858 CDS YP_005240505.1 378453145 complement(4450058..4450663) 1 NC_016856.1 putative soluble lytic murein transglycosylase 4450663 588858005168 STM14_5070 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative soluble lytic murein transglycosylase YP_005240505.1 4450058 R 588858 CDS YP_005240506.1 378453146 complement(4450666..4450953) 1 NC_016856.1 putative inner membrane protein 4450953 588858005169 STM14_5071 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240506.1 4450666 R 588858 CDS YP_005240507.1 378453147 4451435..4451575 1 NC_016856.1 hypothetical protein 4451575 588858005170 STM14_5072 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240507.1 4451435 D 588858 CDS YP_005240508.1 378453148 4451529..4451876 1 NC_016856.1 putative cytoplasmic protein 4451876 588858005171 STM14_5073 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240508.1 4451529 D 588858 CDS YP_005240509.1 378453149 complement(4452009..4453358) 1 NC_016856.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 4453358 lysC 588858005172 lysC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aspartate kinase III YP_005240509.1 4452009 R 588858 CDS YP_005240510.1 378453150 4453703..4455352 1 NC_016856.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 4455352 pgi 588858005173 pgi Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glucose-6-phosphate isomerase YP_005240510.1 4453703 D 588858 CDS YP_005240511.1 378453151 4455796..4456038 1 NC_016856.1 putative outer membrane protein 4456038 yjbE 588858005174 yjbE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005240511.1 4455796 D 588858 CDS YP_005240512.1 378453152 4456072..4456740 1 NC_016856.1 putative outer membrane lipoprotein 4456740 yjbF 588858005175 yjbF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005240512.1 4456072 D 588858 CDS YP_005240513.1 378453153 4456737..4457474 1 NC_016856.1 hypothetical protein 4457474 yjbG 588858005176 yjbG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240513.1 4456737 D 588858 CDS YP_005240514.1 378453154 4457474..4459570 1 NC_016856.1 putative outer membrane lipoprotein 4459570 yjbH 588858005177 yjbH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005240514.1 4457474 D 588858 CDS YP_005240515.1 378453155 4459713..4460123 1 NC_016856.1 phosphate-starvation-inducible protein PsiE 4460123 yjbA 588858005178 yjbA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphate-starvation-inducible protein PsiE YP_005240515.1 4459713 D 588858 CDS YP_005240516.1 378453156 complement(4460289..4461179) 1 NC_016856.1 with MalKFE is involved in the transport of maltose into the cell; maltose transporter permease 4461179 malG 588858005179 malG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S maltose transporter permease YP_005240516.1 4460289 R 588858 CDS YP_005240517.1 378453157 complement(4461194..4462738) 1 NC_016856.1 with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein 4462738 malF 588858005180 malF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S maltose transporter membrane protein YP_005240517.1 4461194 R 588858 CDS YP_005240518.1 378453158 complement(4462681..4462857) 1 NC_016856.1 hypothetical protein 4462857 588858005181 STM14_5083 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240518.1 4462681 R 588858 CDS YP_005240519.1 378453159 4462737..4462877 1 NC_016856.1 hypothetical protein 4462877 588858005182 STM14_5084 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240519.1 4462737 D 588858 CDS YP_005240520.1 378453160 complement(4462870..4464297) 1 NC_016856.1 functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter periplasmic protein 4464297 malE 588858005183 malE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S maltose ABC transporter periplasmic protein YP_005240520.1 4462870 R 588858 CDS YP_005240521.1 378453161 4464422..4465531 1 NC_016856.1 with malEFG is involved in import of maltose/maltodextrin; maltose/maltodextrin transporter ATP-binding protein 4465531 malK 588858005184 malK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S maltose/maltodextrin transporter ATP-binding protein YP_005240521.1 4464422 D 588858 CDS YP_005240522.1 378453162 4465620..4466978 1 NC_016856.1 porin involved in the transport of maltose and maltodextrins; maltoporin 4466978 lamB 588858005185 lamB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S maltoporin YP_005240522.1 4465620 D 588858 CDS YP_005240523.1 378453163 4466972..4467136 1 NC_016856.1 hypothetical protein 4467136 588858005186 STM14_5088 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240523.1 4466972 D 588858 CDS YP_005240524.1 378453164 4467142..4468059 1 NC_016856.1 maltose operon periplasmic protein precursor (SW:MALM_SALTY); protein of mal regulon; maltose regulon periplasmic protein 4468059 malM 588858005187 malM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S maltose regulon periplasmic protein YP_005240524.1 4467142 D 588858 CDS YP_005240525.1 378453165 4468240..4468737 1 NC_016856.1 catalyzes the formation of 4-hydroxybenzoate from chorismate; chorismate pyruvate lyase 4468737 ubiC 588858005188 ubiC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chorismate pyruvate lyase YP_005240525.1 4468240 D 588858 CDS YP_005240526.1 378453166 4468751..4469623 1 NC_016856.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 4469623 ubiA 588858005189 ubiA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-hydroxybenzoate octaprenyltransferase YP_005240526.1 4468751 D 588858 CDS YP_005240527.1 378453167 complement(4469722..4472142) 1 NC_016856.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 4472142 plsB 588858005190 plsB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glycerol-3-phosphate acyltransferase YP_005240527.1 4469722 R 588858 CDS YP_005240528.1 378453168 4472313..4472681 1 NC_016856.1 similar to Escherichia coli diacylglycerol kinase (AAC77012.1); diacylglycerol kinase 4472681 dgkA 588858005191 dgkA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S diacylglycerol kinase YP_005240528.1 4472313 D 588858 CDS YP_005240529.1 378453169 4472790..4473398 1 NC_016856.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 4473398 lexA 588858005192 lexA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S LexA repressor YP_005240529.1 4472790 D 588858 CDS YP_005240530.1 378453170 4473577..4474902 1 NC_016856.1 similar to Escherichia coli DNA-damage-inducible protein F (AAC77014.1); induced by UV and mitomycin C; SOS and lexA regulon; DNA-damage-inducible SOS response protein 4474902 dinF 588858005193 dinF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-damage-inducible SOS response protein YP_005240530.1 4473577 D 588858 CDS YP_005240531.1 378453171 4474899..4475012 1 NC_016856.1 putative cytoplasmic protein 4475012 588858005194 STM14_5096 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240531.1 4474899 D 588858 CDS YP_005240532.1 378453172 4475031..4475243 1 NC_016856.1 unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential; putative stress-response protein 4475243 yjbJ 588858005195 yjbJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative stress-response protein YP_005240532.1 4475031 D 588858 CDS YP_005240533.1 378453173 complement(4475342..4475857) 1 NC_016856.1 Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB; zinc uptake transcriptional repressor 4475857 zur 588858005196 zur Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S zinc uptake transcriptional repressor YP_005240533.1 4475342 R 588858 CDS YP_005240534.1 378453174 4476104..4477414 1 NC_016856.1 similar to plasmid R64 TraF; conjugative transfer protein 4477414 588858005197 STM14_5099 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S conjugative transfer protein YP_005240534.1 4476104 D 588858 CDS YP_005240535.1 378453175 4477502..4478500 1 NC_016856.1 putative TIM-barrel enzyme; possibly dehydrogenases; nifR3 family; tRNA-dihydrouridine synthase A 4478500 yjbN 588858005198 yjbN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tRNA-dihydrouridine synthase A YP_005240535.1 4477502 D 588858 CDS YP_005240536.1 378453176 4478537..4478704 1 NC_016856.1 hypothetical protein 4478704 588858005199 STM14_5101 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240536.1 4478537 D 588858 CDS YP_005240537.1 378453177 4478668..4478910 1 NC_016856.1 coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia; phage shock protein G 4478910 pspG 588858005200 pspG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phage shock protein G YP_005240537.1 4478668 D 588858 CDS YP_005240538.1 378453178 complement(4479085..4480068) 1 NC_016856.1 similar to Escherichia coli quinone oxidoreductase (AAC77021.1); NADPH-dependent; quinone oxidoreductase 4480068 qor 588858005201 qor Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S quinone oxidoreductase YP_005240538.1 4479085 R 588858 CDS YP_005240539.1 378453179 4480133..4481548 1 NC_016856.1 unwinds double stranded DNA; replicative DNA helicase 4481548 dnaB 588858005202 dnaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S replicative DNA helicase YP_005240539.1 4480133 D 588858 CDS YP_005240540.1 378453180 4481580..4482659 1 NC_016856.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 4482659 alr 588858005203 alr Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S alanine racemase YP_005240540.1 4481580 D 588858 CDS YP_005240541.2 410023220 4482845..4484038 1 NC_016856.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4484038 tyrB 588858005204 tyrB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aromatic amino acid aminotransferase YP_005240541.2 4482845 D 588858 CDS YP_005240542.1 378453182 4484225..4484938 1 NC_016856.1 Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; acid phosphatase/phosphotransferase 4484938 aphA 588858005205 aphA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acid phosphatase/phosphotransferase YP_005240542.1 4484225 D 588858 CDS YP_005240543.1 378453183 4485067..4485483 1 NC_016856.1 putative cytoplasmic protein 4485483 yjbQ 588858005206 yjbQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240543.1 4485067 D 588858 CDS YP_005240544.1 378453184 4485486..4485842 1 NC_016856.1 putative cytoplasmic protein 4485842 yjbR 588858005207 yjbR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240544.1 4485486 D 588858 CDS YP_005240545.1 378453185 complement(4485843..4486181) 1 NC_016856.1 putative inner membrane protein 4486181 588858005208 STM14_5110 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240545.1 4485843 R 588858 CDS YP_005240546.1 378453186 complement(4486168..4486623) 1 NC_016856.1 putative outer membrane lipoprotein 4486623 588858005209 STM14_5111 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005240546.1 4486168 R 588858 CDS YP_005240547.1 378453187 complement(4486755..4489580) 1 NC_016856.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 4489580 uvrA 588858005210 uvrA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S excinuclease ABC subunit A YP_005240547.1 4486755 R 588858 CDS YP_005240548.1 378453188 4489545..4489661 1 NC_016856.1 putative cytoplasmic protein 4489661 588858005211 STM14_5113 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240548.1 4489545 D 588858 CDS YP_005240549.2 410023221 4489828..4490358 1 NC_016856.1 binds to single stranded DNA and PriA helcase facilitate replication restart; single-strand DNA-binding protein 4490358 ssb 588858005212 ssb Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S single-strand DNA-binding protein YP_005240549.2 4489828 D 588858 CDS YP_005240550.1 378453190 complement(4490374..4490565) 1 NC_016856.1 hypothetical protein 4490565 588858005213 STM14_5115 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240550.1 4490374 R 588858 CDS YP_005240551.1 378453191 4490568..4490723 1 NC_016856.1 hypothetical protein 4490723 588858005214 STM14_5116 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240551.1 4490568 D 588858 CDS YP_005240552.1 378453192 4491399..4492031 1 NC_016856.1 putative inner membrane or exported protein spi4_A (gi|7467268); hypothetical protein 4492031 588858005215 STM14_5117 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240552.1 4491399 D 588858 CDS YP_005240553.1 378453193 4492028..4493416 1 NC_016856.1 hypothetical protein spi4_A (gi|7467268); putative methyl-accepting chemotaxis protein 4493416 588858005216 STM14_5118 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative methyl-accepting chemotaxis protein YP_005240553.1 4492028 D 588858 CDS YP_005240554.1 378453194 4493406..4494725 1 NC_016856.1 similar to ABC exporter outer membrane component (gi|7467234); putative ABC exporter outer membrane component 4494725 588858005217 STM14_5119 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC exporter outer membrane component YP_005240554.1 4493406 D 588858 CDS YP_005240555.1 378453195 4494722..4495999 1 NC_016856.1 membrane permease; HlyD secretion protein (gi|7467244); cation efflux pump 4495999 588858005218 STM14_5120 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cation efflux pump YP_005240555.1 4494722 D 588858 CDS YP_005240556.1 378453196 4496016..4512695 1 NC_016856.1 fusion of two Salmonella typhimurium hypothetical proteins (gi|7467255) and (gi|7467255); may contain rearrangements with respect to similar proteins; putative inner membrane protein 4512695 588858005219 STM14_5121 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240556.1 4496016 D 588858 CDS YP_005240557.1 378453197 4512735..4514801 1 NC_016856.1 similar to leukotoxin expression protein B (gi|7467272); contains an N-terminal double-glycine peptidase domain; putative ABC-type bacteriocin/lantibiotic exporter 4514801 588858005220 STM14_5122 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type bacteriocin/lantibiotic exporter YP_005240557.1 4512735 D 588858 CDS YP_005240558.1 378453198 complement(4515079..4515360) 1 NC_016856.1 putative inner membrane protein 4515360 yjcB 588858005221 yjcB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240558.1 4515079 R 588858 CDS YP_005240559.1 378453199 4515420..4515557 1 NC_016856.1 hypothetical protein 4515557 588858005222 STM14_5124 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240559.1 4515420 D 588858 CDS YP_005240560.1 378453200 complement(4515741..4515845) 1 NC_016856.1 hypothetical protein 4515845 588858005223 STM14_5125 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240560.1 4515741 R 588858 CDS YP_005240561.1 378453201 4515923..4517524 1 NC_016856.1 diguanylate cyclase 4517524 yjcC 588858005224 yjcC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S diguanylate cyclase YP_005240561.1 4515923 D 588858 CDS YP_005240562.1 378453202 complement(4517512..4517835) 1 NC_016856.1 regulates genes involved in response to oxidative stress; DNA-binding transcriptional regulator SoxS 4517835 soxS 588858005225 soxS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator SoxS YP_005240562.1 4517512 R 588858 CDS YP_005240563.1 378453203 4517922..4518380 1 NC_016856.1 redox-sensitive transcriptional activator SOXR (SW:SOXR_SALTY); MerR family; contains iron-sulfur center for redox-sensing; redox-sensing transcriptional activator 4518380 soxR 588858005226 soxR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S redox-sensing transcriptional activator YP_005240563.1 4517922 D 588858 CDS YP_005240564.1 378453204 complement(4518503..4518631) 1 NC_016856.1 hypothetical protein 4518631 588858005227 STM14_5129 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240564.1 4518503 R 588858 CDS YP_005240565.1 378453205 4518673..4519341 1 NC_016856.1 putative glutathione S-transferase 4519341 588858005228 STM14_5130 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glutathione S-transferase YP_005240565.1 4518673 D 588858 CDS YP_005240566.1 378453206 complement(4519322..4519456) 1 NC_016856.1 hypothetical protein 4519456 588858005229 STM14_5131 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240566.1 4519322 R 588858 CDS YP_005240567.1 378453207 complement(4519489..4519611) 1 NC_016856.1 hypothetical protein 4519611 588858005230 STM14_5132 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240567.1 4519489 R 588858 CDS YP_005240568.1 378453208 4519688..4521037 1 NC_016856.1 xanthine/uracil permease family; hypothetical protein 4521037 yjcD 588858005231 yjcD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240568.1 4519688 D 588858 CDS YP_005240569.1 378453209 complement(4521030..4521188) 1 NC_016856.1 hypothetical protein 4521188 588858005232 STM14_5134 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240569.1 4521030 R 588858 CDS YP_005240570.1 378453210 4521187..4522833 1 NC_016856.1 putative CPA1 family; Na/H transport protein 4522833 yjcE 588858005233 yjcE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Na/H transport protein YP_005240570.1 4521187 D 588858 CDS YP_005240571.1 378453211 complement(4522928..4523815) 1 NC_016856.1 similar to Escherichia coli activator; hydrogen peroxide-inducible genes (AAC76943.1); LysR family; putative transcriptional regulator 4523815 588858005234 STM14_5136 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005240571.1 4522928 R 588858 CDS YP_005240572.1 378453212 4523814..4524329 1 NC_016856.1 LrgA family protein 4524329 588858005235 STM14_5137 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S LrgA family protein YP_005240572.1 4523814 D 588858 CDS YP_005240573.1 378453213 4524322..4525011 1 NC_016856.1 similar to Escherichia coli putative seritonin transporter (AAC75203.1); putative inner membrane protein 4525011 588858005236 STM14_5138 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240573.1 4524322 D 588858 CDS YP_005240574.1 378453214 complement(4525050..4526699) 1 NC_016856.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 4526699 actP 588858005237 actP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acetate permease YP_005240574.1 4525050 R 588858 CDS YP_005240575.1 378453215 complement(4526696..4527085) 1 NC_016856.1 putative inner membrane protein 4527085 yjcH 588858005238 yjcH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240575.1 4526696 R 588858 CDS YP_005240576.1 378453216 complement(4527256..4529214) 1 NC_016856.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 4529214 acs 588858005239 acs Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S acetyl-CoA synthetase YP_005240576.1 4527256 R 588858 CDS YP_005240577.1 378453217 4529401..4529547 1 NC_016856.1 putative cytoplasmic protein 4529547 588858005240 STM14_5142 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240577.1 4529401 D 588858 CDS YP_005240578.1 378453218 4529646..4531082 1 NC_016856.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c nitrite reductase 4531082 nrfA 588858005241 nrfA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome c nitrite reductase YP_005240578.1 4529646 D 588858 CDS YP_005240579.1 378453219 4531194..4531760 1 NC_016856.1 part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; cytochrome c-type protein NrfB 4531760 nrfB 588858005242 nrfB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome c-type protein NrfB YP_005240579.1 4531194 D 588858 CDS YP_005240580.1 378453220 4531757..4532428 1 NC_016856.1 similar to Escherichia coli formate-dependent nitrite reductase; FeS centers (AAC77042.1); putative formate-dependent nitrite reductase 4532428 nrfC 588858005243 nrfC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative formate-dependent nitrite reductase YP_005240580.1 4531757 D 588858 CDS YP_005240581.1 378453221 4532425..4533381 1 NC_016856.1 similar to Escherichia coli formate-dependent nitrate reductase complex; transmembrane protein (AAC77043.1); putative formate-dependent nitrate reductase 4533381 nrfD 588858005244 nrfD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative formate-dependent nitrate reductase YP_005240581.1 4532425 D 588858 CDS YP_005240582.1 378453222 4533374..4535596 1 NC_016856.1 similar to Escherichia coli formate-dependent nitrite reductase; possible assembly function (AAD13457.1); involved in attachment of haem c to cytochrome c552; formate-dependent nitrite reductase 4535596 nrfE 588858005245 nrfE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S formate-dependent nitrite reductase YP_005240582.1 4533374 D 588858 CDS YP_005240583.1 378453223 4535593..4536213 1 NC_016856.1 similar to Escherichia coli protein of formate-dependent nitrite reductase complex (AAD13459.1); involved in attachment of haem c to cytochrome c552; formate-dependent nitrite reductase complex subunit NrfG 4536213 nrfG 588858005246 nrfG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S formate-dependent nitrite reductase complex subunit NrfG YP_005240583.1 4535593 D 588858 CDS YP_005240584.1 378453224 complement(4536353..4536481) 1 NC_016856.1 hypothetical protein 4536481 588858005247 STM14_5149 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240584.1 4536353 R 588858 CDS YP_005240585.1 378453225 4536377..4536649 1 NC_016856.1 hypothetical protein 4536649 588858005248 STM14_5150 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240585.1 4536377 D 588858 CDS YP_005240586.1 378453226 4536558..4537868 1 NC_016856.1 carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system; glutamate/aspartate:proton symporter 4537868 gltP 588858005249 gltP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S glutamate/aspartate:proton symporter YP_005240586.1 4536558 D 588858 CDS YP_005240587.1 378453227 4537849..4538022 1 NC_016856.1 hypothetical protein 4538022 588858005250 STM14_5152 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240587.1 4537849 D 588858 CDS YP_005240588.1 378453228 complement(4538026..4538715) 1 NC_016856.1 contains TPR repeats; hypothetical protein 4538715 yjcO 588858005251 yjcO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240588.1 4538026 R 588858 CDS YP_005240589.1 378453229 complement(4538728..4538883) 1 NC_016856.1 hypothetical protein 4538883 588858005252 STM14_5154 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240589.1 4538728 R 588858 CDS YP_005240590.1 378453230 complement(4538892..4541039) 1 NC_016856.1 similar to Escherichia coli selenopolypeptide subunit of formate dehydrogenase H (AAD13462.1); formate dehydrogenase 4541039 fdhF 588858005253 fdhF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S formate dehydrogenase YP_005240590.1 4538892 R 588858 CDS YP_005240591.1 378453231 complement(4541394..4542302) 1 NC_016856.1 putative dioxygenase for lipid synthesis; LpxO (gi|9454389); putative dioxygenase 4542302 lpxO 588858005254 lpxO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dioxygenase YP_005240591.1 4541394 R 588858 CDS YP_005240592.1 378453232 complement(4542560..4543102) 1 NC_016856.1 PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role; aminoalkylphosphonic acid N-acetyltransferase 4543102 phnO 588858005255 phnO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aminoalkylphosphonic acid N-acetyltransferase YP_005240592.1 4542560 R 588858 CDS YP_005240593.1 378453233 complement(4543146..4543589) 1 NC_016856.1 hypothetical protein 4543589 phnB 588858005256 phnB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240593.1 4543146 R 588858 CDS YP_005240594.1 378453234 complement(4543709..4544044) 1 NC_016856.1 involved in phosphonate metabolism; hypothetical protein 4544044 phnA 588858005257 phnA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240594.1 4543709 R 588858 CDS YP_005240595.1 378453235 4544189..4544284 1 NC_016856.1 hypothetical protein 4544284 588858005258 STM14_5160 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240595.1 4544189 D 588858 CDS YP_005240596.1 378453236 4544512..4546014 1 NC_016856.1 similar to Escherichia coli low-affinity transport system; proline permease II (AAC77072.1); MFS family; proline/glycine betaine transporter 4546014 proP 588858005259 proP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S proline/glycine betaine transporter YP_005240596.1 4544512 D 588858 CDS YP_005240597.1 378453237 4546069..4546173 1 NC_016856.1 hypothetical protein 4546173 588858005260 STM14_5162 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240597.1 4546069 D 588858 CDS YP_005240598.1 378453238 complement(4546181..4547251) 1 NC_016856.1 sensor protein BasS/PmrB (SW:BASS_SALTY); in two-component regulatory system with BasR; sensor protein BasS/PmrB 4547251 basS 588858005261 basS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sensor protein BasS/PmrB YP_005240598.1 4546181 R 588858 CDS YP_005240599.1 378453239 complement(4547261..4547929) 1 NC_016856.1 response regulator in two-component regulatory system with BasS; DNA-binding transcriptional regulator BasR 4547929 basR 588858005262 basR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator BasR YP_005240599.1 4547261 R 588858 CDS YP_005240600.1 378453240 complement(4547926..4549569) 1 NC_016856.1 with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division; putative cell division protein 4549569 yjdB 588858005263 yjdB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cell division protein YP_005240600.1 4547926 R 588858 CDS YP_005240601.1 378453241 complement(4549703..4551040) 1 NC_016856.1 similar to Escherichia coli putative amino acid/amine transport protein; cryptic (AAC77076.1); APC family; arginine:agmatin antiporter 4551040 yjdE 588858005264 yjdE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S arginine:agmatin antiporter YP_005240601.1 4549703 R 588858 CDS YP_005240602.1 378453242 complement(4551180..4551941) 1 NC_016856.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC77077.1); AraC/XylS family; activates aidA; transcriptional activator 4551941 adiY 588858005265 adiY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional activator YP_005240602.1 4551180 R 588858 CDS YP_005240603.1 378453243 4552110..4552238 1 NC_016856.1 hypothetical protein 4552238 588858005266 STM14_5168 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240603.1 4552110 D 588858 CDS YP_005240604.1 378453244 complement(4552239..4554509) 1 NC_016856.1 similar to Escherichia coli biodegradative arginine decarboxylase (AAC77078.1); inducible by acid; catabolic arginine decarboxylase 4554509 adi 588858005267 adi Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S catabolic arginine decarboxylase YP_005240604.1 4552239 R 588858 CDS YP_005240605.2 410023222 complement(4554739..4555671) 1 NC_016856.1 similar to Escherichia coli regulator of melibiose operon (AAC77079.1); AraC/XylS family; DNA-binding transcriptional regulator MelR 4555671 melR 588858005268 melR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional regulator MelR YP_005240605.2 4554739 R 588858 CDS YP_005240606.1 378453246 4555940..4557295 1 NC_016856.1 alpha-galactosidase (SW:AGAL_SALTY); alpha-galactosidase 4557295 melA 588858005269 melA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S alpha-galactosidase YP_005240606.1 4555940 D 588858 CDS YP_005240607.1 378453247 4557379..4558809 1 NC_016856.1 melibiose carrier protein; thiomethylgalactoside permease; melibiose permease; Na+/Li+ melibiose symporter; melibiosetransporter (SW:MELB_SALTY); GPH family; melibiose:sodium symporter 4558809 melB 588858005270 melB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S melibiose:sodium symporter YP_005240607.1 4557379 D 588858 CDS YP_005240608.1 378453248 complement(4558907..4560553) 1 NC_016856.1 similar to Escherichia coli fumarase B; fumarate hydratase class I anaerobic isozyme (AAC77083.1); fumarase B 4560553 fumB 588858005271 fumB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fumarase B YP_005240608.1 4558907 R 588858 CDS YP_005240609.1 378453249 complement(4560649..4561989) 1 NC_016856.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 4561989 dcuB 588858005272 dcuB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S anaerobic C4-dicarboxylate transporter YP_005240609.1 4560649 R 588858 CDS YP_005240610.1 378453250 complement(4562136..4562402) 1 NC_016856.1 putative cytoplasmic protein 4562402 588858005273 STM14_5175 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240610.1 4562136 R 588858 CDS YP_005240611.1 378453251 complement(4562719..4563438) 1 NC_016856.1 response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; DNA-binding transcriptional activator DcuR 4563438 dcuR 588858005274 dcuR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional activator DcuR YP_005240611.1 4562719 R 588858 CDS YP_005240612.1 378453252 complement(4563435..4565066) 1 NC_016856.1 C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; sensory histidine kinase DcuS 4565066 dcuS 588858005275 dcuS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sensory histidine kinase DcuS YP_005240612.1 4563435 R 588858 CDS YP_005240613.1 378453253 4565422..4567851 1 NC_016856.1 similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit A (AAC73980.1); putative anaerobic dimethylsulfoxide reductase subunit A 4567851 588858005276 STM14_5178 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative anaerobic dimethylsulfoxide reductase subunit A YP_005240613.1 4565422 D 588858 CDS YP_005240614.1 378453254 4567865..4568491 1 NC_016856.1 similar to Escherichia coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); putative anaerobic dimethylsulfoxide reductase subunit B 4568491 588858005277 STM14_5179 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative anaerobic dimethylsulfoxide reductase subunit B YP_005240614.1 4567865 D 588858 CDS YP_005240615.1 378453255 4568484..4569257 1 NC_016856.1 similar to Escherichia coli putative DMSO reductase anchor subunit (AAC74662.1); putative anaerobic dimethylsulfoxide reductase subunit C 4569257 588858005278 STM14_5180 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative anaerobic dimethylsulfoxide reductase subunit C YP_005240615.1 4568484 D 588858 CDS YP_005240616.1 378453256 4569273..4569926 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase component (AAC74663.1); putative anaerobic dehydrogenase component 4569926 588858005279 STM14_5181 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative anaerobic dehydrogenase component YP_005240616.1 4569273 D 588858 CDS YP_005240617.1 378453257 complement(4570010..4571410) 1 NC_016856.1 hypothetical protein 4571410 588858005280 STM14_5182 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240617.1 4570010 R 588858 CDS YP_005240618.1 378453258 4571436..4571549 1 NC_016856.1 hypothetical protein 4571549 588858005281 STM14_5183 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240618.1 4571436 D 588858 CDS YP_005240619.1 378453259 4571714..4572619 1 NC_016856.1 putative inner membrane protein 4572619 588858005282 STM14_5184 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240619.1 4571714 D 588858 CDS YP_005240620.1 378453260 complement(4572913..4573182) 1 NC_016856.1 hypothetical protein 4573182 588858005283 STM14_5185 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240620.1 4572913 R 588858 CDS YP_005240621.1 378453261 complement(4573190..4573405) 1 NC_016856.1 putative cytoplasmic protein 4573405 588858005284 STM14_5186 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240621.1 4573190 R 588858 CDS YP_005240622.1 378453262 complement(4573428..4573715) 1 NC_016856.1 LuxR family; putative regulatory protein 4573715 588858005285 STM14_5187 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005240622.1 4573428 R 588858 CDS YP_005240623.1 378453263 complement(4573712..4574587) 1 NC_016856.1 HilD (gi|4455108); AraC-type; contains putative DNA-binding domain; putative DNA-binding protein 4574587 588858005286 STM14_5188 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA-binding protein YP_005240623.1 4573712 R 588858 CDS YP_005240624.1 378453264 4574725..4574850 1 NC_016856.1 hypothetical protein 4574850 588858005287 STM14_5189 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240624.1 4574725 D 588858 CDS YP_005240625.1 378453265 complement(4574852..4575073) 1 NC_016856.1 putative cytoplasmic protein 4575073 588858005288 STM14_5190 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240625.1 4574852 R 588858 CDS YP_005240626.1 378453266 4575390..4575683 1 NC_016856.1 CopG family; putative helix-turn-helix protein; hypothetical protein 4575683 588858005289 STM14_5191 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240626.1 4575390 D 588858 CDS YP_005240627.1 378453267 4575680..4576171 1 NC_016856.1 putative acetyltransferase 4576171 588858005290 STM14_5192 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative acetyltransferase YP_005240627.1 4575680 D 588858 CDS YP_005240628.1 378453268 complement(4576419..4577171) 1 NC_016856.1 nonspecific acid phosphatase precursor (SW:PHON_SALTY); non-specific acid phosphatase 4577171 phoN 588858005291 phoN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S non-specific acid phosphatase YP_005240628.1 4576419 R 588858 CDS YP_005240629.1 378453269 complement(4578381..4578758) 1 NC_016856.1 ethyl tert-butyl ether degradation EthD 4578758 588858005292 STM14_5194 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ethyl tert-butyl ether degradation EthD YP_005240629.1 4578381 R 588858 CDS YP_005240630.1 378453270 4578830..4579162 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator (AAC73589.1); MerR family; putative regulatory protein 4579162 588858005293 STM14_5195 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005240630.1 4578830 D 588858 CDS YP_005240631.1 378453271 complement(4579152..4579388) 1 NC_016856.1 hypothetical protein 4579388 588858005294 STM14_5196 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240631.1 4579152 R 588858 CDS YP_005240632.1 378453272 complement(4579601..4580176) 1 NC_016856.1 putative transcriptional regulator 4580176 yjdC 588858005296 yjdC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005240632.1 4579601 R 588858 CDS YP_005240633.1 378453273 complement(4580213..4581916) 1 NC_016856.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 4581916 dipZ 588858005297 dipZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thiol:disulfide interchange protein YP_005240633.1 4580213 R 588858 CDS YP_005240634.1 378453274 complement(4581892..4582239) 1 NC_016856.1 copper binding protein required for copper tolerance; involved in resistance toward heavy metals; divalent-cation tolerance protein CutA 4582239 cutA 588858005298 cutA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S divalent-cation tolerance protein CutA YP_005240634.1 4581892 R 588858 CDS YP_005240635.1 378453275 complement(4582360..4583661) 1 NC_016856.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 4583661 dcuA 588858005299 dcuA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S anaerobic C4-dicarboxylate transporter YP_005240635.1 4582360 R 588858 CDS YP_005240636.1 378453276 complement(4583776..4585212) 1 NC_016856.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 4585212 aspA 588858005300 aspA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aspartate ammonia-lyase YP_005240636.1 4583776 R 588858 CDS YP_005240637.1 378453277 complement(4585245..4585367) 1 NC_016856.1 hypothetical protein 4585367 588858005301 STM14_5203 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240637.1 4585245 R 588858 CDS YP_005240638.1 378453278 4585553..4586029 1 NC_016856.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 4586029 fxsA 588858005302 fxsA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S FxsA protein YP_005240638.1 4585553 D 588858 CDS YP_005240639.1 378453279 complement(4586088..4587329) 1 NC_016856.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH 4587329 yjeH 588858005303 yjeH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S inner membrane protein YjeH YP_005240639.1 4586088 R 588858 CDS YP_005240640.1 378453280 4587425..4587898 1 NC_016856.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4587898 groES 588858005304 groES Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S co-chaperonin GroES YP_005240640.1 4587425 D 588858 CDS YP_005240641.1 378453281 4587942..4589588 1 NC_016856.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 4589588 groEL 588858005305 groEL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S chaperonin GroEL YP_005240641.1 4587942 D 588858 CDS YP_005240642.1 378453282 complement(4589666..4589833) 1 NC_016856.1 hypothetical protein 4589833 588858005306 STM14_5208 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240642.1 4589666 R 588858 CDS YP_005240643.1 378453283 4589814..4590185 1 NC_016856.1 putative outer membrane lipoprotein 4590185 yjeI 588858005307 yjeI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane lipoprotein YP_005240643.1 4589814 D 588858 CDS YP_005240644.1 378453284 complement(4590233..4591090) 1 NC_016856.1 putative inner membrane protein 4591090 yjeJ 588858005308 yjeJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240644.1 4590233 R 588858 CDS YP_005240645.1 378453285 4591089..4591223 1 NC_016856.1 hypothetical protein 4591223 588858005309 STM14_5211 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240645.1 4591089 D 588858 CDS YP_005240646.1 378453286 complement(4591232..4591378) 1 NC_016856.1 hypothetical protein 4591378 588858005310 STM14_5212 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240646.1 4591232 R 588858 CDS YP_005240647.1 378453287 complement(4591372..4592400) 1 NC_016856.1 putative aminomutase 4592400 yjeK 588858005311 yjeK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative aminomutase YP_005240647.1 4591372 R 588858 CDS YP_005240648.1 378453288 4592441..4593007 1 NC_016856.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 4593007 efp 588858005312 efp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S elongation factor P YP_005240648.1 4592441 D 588858 CDS YP_005240649.1 378453289 4593026..4593202 1 NC_016856.1 putative entericidin A precursor 4593202 ecnA 588858005313 ecnA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative entericidin A precursor YP_005240649.1 4593026 D 588858 CDS YP_005240650.1 378453290 4593310..4593456 1 NC_016856.1 entericidin B membrane lipoprotein 4593456 ecnB 588858005314 ecnB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S entericidin B membrane lipoprotein YP_005240650.1 4593310 D 588858 CDS YP_005240651.1 378453291 complement(4593487..4594074) 1 NC_016856.1 LuxR family; putative regulatory protein 4594074 ecnR 588858005315 ecnR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative regulatory protein YP_005240651.1 4593487 R 588858 CDS YP_005240652.1 378453292 4594331..4594648 1 NC_016856.1 member of the SMR family of proton-dependent drug efflux transporters; quaternary ammonium compound efflux pump; confers resistance to cetylpyridinium, cetyldimethylethyl ammonium and cetrimide cations; quaternary ammonium compound-resistance protein SugE 4594648 sugE 588858005316 sugE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S quaternary ammonium compound-resistance protein SugE YP_005240652.1 4594331 D 588858 CDS YP_005240653.1 378453293 complement(4594665..4595198) 1 NC_016856.1 lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc 4595198 blc 588858005317 blc Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S outer membrane lipoprotein Blc YP_005240653.1 4594665 R 588858 CDS YP_005240654.1 378453294 complement(4595310..4595669) 1 NC_016856.1 in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 4595669 frdD 588858005318 frdD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fumarate reductase subunit D YP_005240654.1 4595310 R 588858 CDS YP_005240655.1 378453295 complement(4595680..4596075) 1 NC_016856.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C 4596075 frdC 588858005319 frdC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fumarate reductase subunit C YP_005240655.1 4595680 R 588858 CDS YP_005240656.1 378453296 complement(4596086..4596820) 1 NC_016856.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 4596820 frdB 588858005320 frdB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fumarate reductase iron-sulfur subunit YP_005240656.1 4596086 R 588858 CDS YP_005240657.1 378453297 complement(4596813..4598603) 1 NC_016856.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 4598603 frdA 588858005321 frdA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fumarate reductase flavoprotein subunit YP_005240657.1 4596813 R 588858 CDS YP_005240658.1 378453298 4598926..4599903 1 NC_016856.1 lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 4599903 yjeA 588858005322 yjeA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lysyl-tRNA synthetase YP_005240658.1 4598926 D 588858 CDS YP_005240659.1 378453299 4599983..4600087 1 NC_016856.1 hypothetical protein 4600087 588858005323 STM14_5225 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240659.1 4599983 D 588858 CDS YP_005240660.1 378453300 4600129..4601631 1 NC_016856.1 hypothetical protein in poxA-psd intergenic region (SW:YJEM_SALTY); APC family; putative amino-acid transport protein 4601631 yjeM 588858005324 yjeM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative amino-acid transport protein YP_005240660.1 4600129 D 588858 CDS YP_005240661.1 378453301 4601683..4601997 1 NC_016856.1 putative inner membrane protein 4601997 yjeO 588858005325 yjeO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240661.1 4601683 D 588858 CDS YP_005240662.1 378453302 complement(4602064..4605390) 1 NC_016856.1 similar to Escherichia coli putative periplasmic binding protein (AAC77119.1); hypothetical protein 4605390 yjeP 588858005326 yjeP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240662.1 4602064 R 588858 CDS YP_005240663.1 378453303 complement(4605409..4606377) 1 NC_016856.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 4606377 psd 588858005327 psd Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphatidylserine decarboxylase YP_005240663.1 4605409 R 588858 CDS YP_005240664.1 378453304 complement(4606469..4607521) 1 NC_016856.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 4607521 yjeQ 588858005328 yjeQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribosome-associated GTPase YP_005240664.1 4606469 R 588858 CDS YP_005240665.1 378453305 4607628..4608173 1 NC_016856.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 4608173 orn 588858005329 orn Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S oligoribonuclease YP_005240665.1 4607628 D 588858 CDS YP_005240666.1 378453306 complement(4608235..4608975) 1 NC_016856.1 similar to Escherichia coli arginine 3rd transport system periplasmic binding protein (AAC73947.1); putative arginine-binding periplasmic protein 4608975 588858005330 STM14_5232 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative arginine-binding periplasmic protein YP_005240666.1 4608235 R 588858 CDS YP_005240667.1 378453307 complement(4610060..4611199) 1 NC_016856.1 putative FeS protein 4611199 yjeS 588858005334 yjeS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative FeS protein YP_005240667.1 4610060 R 588858 CDS YP_005240668.1 378453308 4611198..4612745 1 NC_016856.1 hypothetical protein 4612745 yjeF 588858005335 yjeF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240668.1 4611198 D 588858 CDS YP_005240669.1 378453309 4612717..4613178 1 NC_016856.1 possibly involved in cell wall synthesis; putative ATPase 4613178 yjeE 588858005336 yjeE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ATPase YP_005240669.1 4612717 D 588858 CDS YP_005240670.1 378453310 4613195..4614514 1 NC_016856.1 N-acetylmuramoyl-L-alanine amidase AMIB (SW:AMIB_SALTY); a murein hydrolase; N-acetylmuramoyl-l-alanine amidase II 4614514 amiB 588858005337 amiB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S N-acetylmuramoyl-l-alanine amidase II YP_005240670.1 4613195 D 588858 CDS YP_005240671.1 378453311 4614524..4616380 1 NC_016856.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 4616380 mutL 588858005338 mutL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA mismatch repair protein YP_005240671.1 4614524 D 588858 CDS YP_005240672.1 378453312 4616373..4617323 1 NC_016856.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 4617323 miaA 588858005339 miaA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tRNA delta(2)-isopentenylpyrophosphate transferase YP_005240672.1 4616373 D 588858 CDS YP_005240673.1 378453313 4617406..4617714 1 NC_016856.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 4617714 hfq 588858005340 hfq Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S RNA-binding protein Hfq YP_005240673.1 4617406 D 588858 CDS YP_005240674.1 378453314 4617786..4619066 1 NC_016856.1 involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; putative GTPase HflX 4619066 hflX 588858005341 hflX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative GTPase HflX YP_005240674.1 4617786 D 588858 CDS YP_005240675.1 378453315 4619281..4620540 1 NC_016856.1 with HflC inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflK 4620540 hflK 588858005342 hflK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S FtsH protease regulator HflK YP_005240675.1 4619281 D 588858 CDS YP_005240676.1 378453316 4620543..4621547 1 NC_016856.1 with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC 4621547 hflC 588858005343 hflC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S FtsH protease regulator HflC YP_005240676.1 4620543 D 588858 CDS YP_005240677.1 378453317 4621626..4621823 1 NC_016856.1 putative inner membrane protein 4621823 yjeT 588858005344 yjeT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240677.1 4621626 D 588858 CDS YP_005240678.1 378453318 4621703..4621933 1 NC_016856.1 hypothetical protein 4621933 588858005345 STM14_5247 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240678.1 4621703 D 588858 CDS YP_005240679.1 378453319 4621926..4623224 1 NC_016856.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 4623224 purA 588858005346 purA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S adenylosuccinate synthetase YP_005240679.1 4621926 D 588858 CDS YP_005240680.1 378453320 4623431..4623856 1 NC_016856.1 negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR 4623856 yjeB 588858005347 yjeB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional repressor NsrR YP_005240680.1 4623431 D 588858 CDS YP_005240681.1 378453321 4623894..4626332 1 NC_016856.1 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; exoribonuclease R 4626332 vacB 588858005348 vacB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S exoribonuclease R YP_005240681.1 4623894 D 588858 CDS YP_005240682.1 378453322 4626423..4627154 1 NC_016856.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 4627154 yjfH 588858005349 yjfH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 23S rRNA (guanosine-2'-O-)-methyltransferase YP_005240682.1 4626423 D 588858 CDS YP_005240683.1 378453323 4627286..4627690 1 NC_016856.1 putative cytoplasmic protein 4627690 yjfI 588858005350 yjfI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240683.1 4627286 D 588858 CDS YP_005240684.1 378453324 4627705..4628403 1 NC_016856.1 similar to Escherichia coli putative alpha helical protein (AAC77139.1); IM30; suppresses sigma54-dependent transcription; putative phage shock protein A 4628403 yjfJ 588858005351 yjfJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phage shock protein A YP_005240684.1 4627705 D 588858 CDS YP_005240685.1 378453325 4628403..4629473 1 NC_016856.1 similar to eukaryotic potassium channels; putative potassium channel 4629473 588858005352 STM14_5254 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative potassium channel YP_005240685.1 4628403 D 588858 CDS YP_005240686.1 378453326 4629446..4630129 1 NC_016856.1 putative cytoplasmic protein 4630129 yjfK 588858005353 yjfK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240686.1 4629446 D 588858 CDS YP_005240687.1 378453327 4630147..4630545 1 NC_016856.1 putative inner membrane protein 4630545 yjfL 588858005354 yjfL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240687.1 4630147 D 588858 CDS YP_005240688.1 378453328 4630555..4631193 1 NC_016856.1 putative inner membrane protein 4631193 yjfM 588858005355 yjfM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240688.1 4630555 D 588858 CDS YP_005240689.1 378453329 4631196..4632359 1 NC_016856.1 similar to Escherichia coli putative synthetase/amidase (AAC77143.1); putative glutathionylspermidine synthase 4632359 yjfC 588858005356 yjfC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glutathionylspermidine synthase YP_005240689.1 4631196 D 588858 CDS YP_005240690.1 378453330 4632426..4634066 1 NC_016856.1 catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA; isovaleryl CoA dehydrogenase 4634066 aidB 588858005357 aidB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S isovaleryl CoA dehydrogenase YP_005240690.1 4632426 D 588858 CDS YP_005240691.1 378453331 complement(4634111..4634431) 1 NC_016856.1 putative inner membrane protein 4634431 yjfN 588858005358 yjfN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240691.1 4634111 R 588858 CDS YP_005240692.1 378453332 complement(4634517..4634846) 1 NC_016856.1 putative lipoprotein 4634846 yjfO 588858005359 yjfO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative lipoprotein YP_005240692.1 4634517 R 588858 CDS YP_005240693.1 378453333 4635030..4635779 1 NC_016856.1 YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; esterase 4635779 yjfP 588858005360 yjfP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S esterase YP_005240693.1 4635030 D 588858 CDS YP_005240694.1 378453334 complement(4635776..4636531) 1 NC_016856.1 negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR 4636531 yjfQ 588858005361 yjfQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional repressor UlaR YP_005240694.1 4635776 R 588858 CDS YP_005240695.1 378453335 complement(4636636..4637700) 1 NC_016856.1 contains beta-lactamase fold; putative L-ascorbate 6-phosphate lactonase 4637700 yjfR 588858005362 yjfR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative L-ascorbate 6-phosphate lactonase YP_005240695.1 4636636 R 588858 CDS YP_005240696.1 378453336 4638063..4639460 1 NC_016856.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 4639460 ulaA_3 588858005363 ulaA_3 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S PTS system ascorbate-specific transporter subunit IIC YP_005240696.1 4638063 D 588858 CDS YP_005240697.1 378453337 4639476..4639781 1 NC_016856.1 sga subunit; L-ascorbate-specific enzyme IIB component of PTS 4639781 sgaB 588858005364 sgaB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-ascorbate-specific enzyme IIB component of PTS YP_005240697.1 4639476 D 588858 CDS YP_005240698.1 378453338 4639791..4640255 1 NC_016856.1 similar to Escherichia coli putative PTS system enzyme II A component (AAC77152.1); sga subunit; L-ascorbate-specific enzyme IIA component of PTS 4640255 ptxA 588858005365 ptxA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-ascorbate-specific enzyme IIA component of PTS YP_005240698.1 4639791 D 588858 CDS YP_005240699.1 378453339 4640269..4640919 1 NC_016856.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 4640919 ulaD 588858005366 ulaD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 3-keto-L-gulonate-6-phosphate decarboxylase YP_005240699.1 4640269 D 588858 CDS YP_005240700.1 378453340 4640929..4641783 1 NC_016856.1 UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway; L-xylulose 5-phosphate 3-epimerase 4641783 sgaU 588858005367 sgaU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-xylulose 5-phosphate 3-epimerase YP_005240700.1 4640929 D 588858 CDS YP_005240701.1 378453341 4641783..4642469 1 NC_016856.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 4642469 sgaE 588858005368 sgaE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-ribulose-5-phosphate 4-epimerase YP_005240701.1 4641783 D 588858 CDS YP_005240702.1 378453342 complement(4642598..4642873) 1 NC_016856.1 putative outer membrane protein 4642873 yjfY 588858005369 yjfY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005240702.1 4642598 R 588858 CDS YP_005240703.1 378453343 complement(4642797..4642994) 1 NC_016856.1 hypothetical protein 4642994 588858005370 STM14_5272 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240703.1 4642797 R 588858 CDS YP_005240704.1 378453344 4642921..4643028 1 NC_016856.1 hypothetical protein 4643028 588858005371 STM14_5273 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240704.1 4642921 D 588858 CDS YP_005240705.1 378453345 4643067..4643273 1 NC_016856.1 putative cytoplasmic protein 4643273 588858005372 STM14_5274 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240705.1 4643067 D 588858 CDS YP_005240706.1 378453346 4643344..4643739 1 NC_016856.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 4643739 rpsF 588858005373 rpsF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S6 YP_005240706.1 4643344 D 588858 CDS YP_005240707.1 378453347 4643746..4644060 1 NC_016856.1 binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 4644060 priB 588858005374 priB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S primosomal replication protein N YP_005240707.1 4643746 D 588858 CDS YP_005240708.1 378453348 4644065..4644292 1 NC_016856.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4644292 rpsR 588858005375 rpsR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 30S ribosomal protein S18 YP_005240708.1 4644065 D 588858 CDS YP_005240709.1 378453349 4644334..4644783 1 NC_016856.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4644783 rplI 588858005376 rplI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 50S ribosomal protein L9 YP_005240709.1 4644334 D 588858 CDS YP_005240710.1 378453350 4644931..4645857 1 NC_016856.1 putative permease 4645857 yifZ 588858005377 yifZ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005240710.1 4644931 D 588858 CDS YP_005240711.1 378453351 complement(4645907..4646542) 1 NC_016856.1 putative cell envelope opacity-associated protein A 4646542 ytfB 588858005378 ytfB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cell envelope opacity-associated protein A YP_005240711.1 4645907 R 588858 CDS YP_005240712.1 378453352 4646651..4647382 1 NC_016856.1 FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase 4647382 fklB 588858005379 fklB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptidyl-prolyl cis-trans isomerase YP_005240712.1 4646651 D 588858 CDS YP_005240713.1 378453353 4647678..4649087 1 NC_016856.1 involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 4649087 cycA 588858005380 cycA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-alanine/D-serine/glycine permease YP_005240713.1 4647678 D 588858 CDS YP_005240714.1 378453354 complement(4649199..4649861) 1 NC_016856.1 Involved in anaerobic NO protection and iron metabolism; cell morphogenesis/cell wall metabolism regulator 4649861 ytfE 588858005381 ytfE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cell morphogenesis/cell wall metabolism regulator YP_005240714.1 4649199 R 588858 CDS YP_005240715.1 378453355 complement(4649964..4650929) 1 NC_016856.1 similar to Escherichia coli putative transmembrane subunit (AAC77167.1); putative cationic amino acid transporter 4650929 ytfF 588858005382 ytfF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cationic amino acid transporter YP_005240715.1 4649964 R 588858 CDS YP_005240716.1 378453356 complement(4651010..4651858) 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC77168.1); putative reductase 4651858 ytfG 588858005383 ytfG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative reductase YP_005240716.1 4651010 R 588858 CDS YP_005240717.1 378453357 4651946..4652332 1 NC_016856.1 putative transcriptional regulator 4652332 ytfH 588858005384 ytfH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005240717.1 4651946 D 588858 CDS YP_005240718.1 378453358 complement(4652390..4654333) 1 NC_016856.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein 4654333 cpdB 588858005385 cpdB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein YP_005240718.1 4652390 R 588858 CDS YP_005240719.1 378453359 complement(4654346..4654567) 1 NC_016856.1 hypothetical protein 4654567 588858005386 STM14_5288 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240719.1 4654346 R 588858 CDS YP_005240720.1 378453360 4654601..4655341 1 NC_016856.1 CysQ protein (SW:CYSQ_SALTY); affects pool of 3'-phosphoadenosine-5'-phosphosulfate in pathway of sulfite synthesis; adenosine 3'-phosphate 5'-phosphosulfate 3'(2'),5'-bisphosphate nucleotidase 4655341 cysQ 588858005387 cysQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S adenosine 3'-phosphate 5'-phosphosulfate 3'(2'),5'-bisphosphate nucleotidase YP_005240720.1 4654601 D 588858 CDS YP_005240721.1 378453361 complement(4655331..4655888) 1 NC_016856.1 putative transcriptional regulator 4655888 ytfJ 588858005388 ytfJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005240721.1 4655331 R 588858 CDS YP_005240722.1 378453362 complement(4655902..4656081) 1 NC_016856.1 hypothetical protein 4656081 588858005389 STM14_5291 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240722.1 4655902 R 588858 CDS YP_005240723.1 378453363 4656215..4656421 1 NC_016856.1 putative cytoplasmic protein 4656421 ytfK 588858005390 ytfK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240723.1 4656215 D 588858 CDS YP_005240724.1 378453364 complement(4656506..4657849) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC77175.1); putative hemolysin-like protein 4657849 ytfL 588858005391 ytfL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hemolysin-like protein YP_005240724.1 4656506 R 588858 CDS YP_005240725.1 378453365 complement(4658032..4658670) 1 NC_016856.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 4658670 msrA 588858005392 msrA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S methionine sulfoxide reductase A YP_005240725.1 4658032 R 588858 CDS YP_005240726.1 378453366 4658725..4658841 1 NC_016856.1 hypothetical protein 4658841 588858005393 STM14_5295 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240726.1 4658725 D 588858 CDS YP_005240727.1 378453367 4658883..4660616 1 NC_016856.1 putative outer membrane protein 4660616 ytfM 588858005394 ytfM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005240727.1 4658883 D 588858 CDS YP_005240728.1 378453368 4660613..4664392 1 NC_016856.1 hypothetical protein 4664392 ytfN 588858005395 ytfN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240728.1 4660613 D 588858 CDS YP_005240729.1 378453369 4664395..4664739 1 NC_016856.1 putative cytoplasmic protein 4664739 ytfP 588858005396 ytfP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240729.1 4664395 D 588858 CDS YP_005240730.1 378453370 complement(4664793..4666001) 1 NC_016856.1 similar to Escherichia coli D-galactonate transport (AAC76714.1); putative permease 4666001 588858005397 STM14_5299 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005240730.1 4664793 R 588858 CDS YP_005240731.1 378453371 complement(4665998..4667161) 1 NC_016856.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; putative metallo-dependent hydrolase 4667161 588858005398 STM14_5300 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative metallo-dependent hydrolase YP_005240731.1 4665998 R 588858 CDS YP_005240732.1 378453372 complement(4667571..4668101) 1 NC_016856.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 4668101 ppa 588858005399 ppa Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S inorganic pyrophosphatase YP_005240732.1 4667571 R 588858 CDS YP_005240733.1 378453373 complement(4668328..4669326) 1 NC_016856.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 4669326 fbp 588858005400 fbp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S fructose-1,6-bisphosphatase YP_005240733.1 4668328 R 588858 CDS YP_005240734.1 378453374 complement(4669323..4669508) 1 NC_016856.1 hypothetical protein 4669508 588858005401 STM14_5303 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240734.1 4669323 R 588858 CDS YP_005240735.1 378453375 4669501..4670880 1 NC_016856.1 similar to Escherichia coli putative ligase (AAC77190.1); UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4670880 mpl 588858005402 mpl Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_005240735.1 4669501 D 588858 CDS YP_005240736.1 378453376 complement(4670877..4671137) 1 NC_016856.1 hypothetical protein 4671137 588858005403 STM14_5305 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240736.1 4670877 R 588858 CDS YP_005240737.1 378453377 4671075..4671302 1 NC_016856.1 hypothetical protein 4671302 588858005404 STM14_5306 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240737.1 4671075 D 588858 CDS YP_005240738.1 378453378 4671371..4672204 1 NC_016856.1 putative transcriptional regulator 4672204 588858005405 STM14_5307 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005240738.1 4671371 D 588858 CDS YP_005240739.1 378453379 complement(4672255..4673688) 1 NC_016856.1 similar to Escherichia coli xylose-proton symport (AAC77001.1); sugar transporter 4673688 588858005406 STM14_5308 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sugar transporter YP_005240739.1 4672255 R 588858 CDS YP_005240740.1 378453380 complement(4673931..4674110) 1 NC_016856.1 hypothetical protein 4674110 588858005407 STM14_5309 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240740.1 4673931 R 588858 CDS YP_005240741.1 378453381 4674147..4675583 1 NC_016856.1 similar to Escherichia coli xylose-proton symport (AAC77001.1); sugar transporter 4675583 588858005408 STM14_5310 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sugar transporter YP_005240741.1 4674147 D 588858 CDS YP_005240742.1 378453382 complement(4675936..4676745) 1 NC_016856.1 putative inner membrane protein 4676745 588858005409 STM14_5311 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240742.1 4675936 R 588858 CDS YP_005240743.1 378453383 complement(4676770..4678275) 1 NC_016856.1 similar to Escherichia coli phenylacetaldehyde dehydrogenase (AAC74467.1); putative NAD-dependent aldehyde dehydrogenase 4678275 588858005410 STM14_5312 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative NAD-dependent aldehyde dehydrogenase YP_005240743.1 4676770 R 588858 CDS YP_005240744.1 378453384 complement(4678291..4678593) 1 NC_016856.1 putative cytoplasmic protein 4678593 588858005411 STM14_5313 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240744.1 4678291 R 588858 CDS YP_005240745.1 378453385 4678716..4679540 1 NC_016856.1 similar to Escherichia coli putative AraC-type regulatory protein (AAC74766.1); contains putative DNA-binding domain; putative DNA-binding protein 4679540 588858005412 STM14_5314 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA-binding protein YP_005240745.1 4678716 D 588858 CDS YP_005240746.1 378453386 4679544..4679654 1 NC_016856.1 hypothetical protein 4679654 588858005413 STM14_5315 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240746.1 4679544 D 588858 CDS YP_005240747.1 378453387 4679815..4680720 1 NC_016856.1 putative endonuclease 4680720 588858005414 STM14_5316 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative endonuclease YP_005240747.1 4679815 D 588858 CDS YP_005240748.1 378453388 4680739..4681749 1 NC_016856.1 similar to Escherichia coli putative dehydrogenase (AAC77236.1); putative dehydrogenase 4681749 588858005415 STM14_5317 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dehydrogenase YP_005240748.1 4680739 D 588858 CDS YP_005240749.1 378453389 4681846..4683189 1 NC_016856.1 SrfJ (gi|8347262); activated by transcription factor SsrB; similar to Homo sapiens lysosomal glucosyl ceramidase; lysosomal glucosyl ceramidase-like protein 4683189 srfJ 588858005416 srfJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lysosomal glucosyl ceramidase-like protein YP_005240749.1 4681846 D 588858 CDS YP_005240750.1 378453390 4683190..4684023 1 NC_016856.1 putative endonuclease 4684023 588858005417 STM14_5319 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative endonuclease YP_005240750.1 4683190 D 588858 CDS YP_005240751.1 378453391 complement(4684020..4685186) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC75382.1); hypothetical protein 4685186 588858005418 STM14_5320 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240751.1 4684020 R 588858 CDS YP_005240752.1 378453392 complement(4685247..4687178) 1 NC_016856.1 putative carbohydrate kinase 4687178 588858005419 STM14_5321 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative carbohydrate kinase YP_005240752.1 4685247 R 588858 CDS YP_005240753.1 378453393 4689572..4689691 1 NC_016856.1 hypothetical protein 4689691 588858005421 STM14_5323 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240753.1 4689572 D 588858 CDS YP_005240754.1 378453394 4689722..4690744 1 NC_016856.1 similar to Escherichia coli putative virulence factor (AAC74152.1); oxidoreductase family; putative thiamine pyrophosphate-requiring enzyme; myo-inositol 2-dehydrogenase 4690744 588858005422 STM14_5324 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S myo-inositol 2-dehydrogenase YP_005240754.1 4689722 D 588858 CDS YP_005240755.1 378453395 4690817..4692043 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC77235.1); putative permease 4692043 588858005423 STM14_5325 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005240755.1 4690817 D 588858 CDS YP_005240756.1 378453396 4692204..4693019 1 NC_016856.1 putative cytoplasmic protein 4693019 588858005424 STM14_5326 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240756.1 4692204 D 588858 CDS YP_005240757.1 378453397 4693072..4693956 1 NC_016856.1 putative endonuclease 4693956 588858005425 STM14_5327 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative endonuclease YP_005240757.1 4693072 D 588858 CDS YP_005240758.1 378453398 complement(4694012..4694563) 1 NC_016856.1 similar to Escherichia coli putative alpha helix protein (AAC77191.1); hypothetical protein 4694563 yjgA 588858005426 yjgA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240758.1 4694012 R 588858 CDS YP_005240759.1 378453399 4694659..4696011 1 NC_016856.1 protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA 4696011 pmbA 588858005427 pmbA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptidase PmbA YP_005240759.1 4694659 D 588858 CDS YP_005240760.1 378453400 4696110..4696496 1 NC_016856.1 similar to Escherichia coli cytochrome b562 (AAC77193.1); cytochrome b562 4696496 cybC 588858005428 cybC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S cytochrome b562 YP_005240760.1 4696110 D 588858 CDS YP_005240761.1 378453401 4696774..4697112 1 NC_016856.1 nitrogen regulation protein NR(ii) (SW:NTRB_SALTY); putative cytoplasmic protein 4697112 588858005429 STM14_5331 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240761.1 4696774 D 588858 CDS YP_005240762.1 378453402 4697123..4697485 1 NC_016856.1 putative cytoplasmic protein 4697485 588858005430 STM14_5332 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240762.1 4697123 D 588858 CDS YP_005240763.1 378453403 4697485..4697787 1 NC_016856.1 putative cytoplasmic protein 4697787 588858005431 STM14_5333 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240763.1 4697485 D 588858 CDS YP_005240764.1 378453404 4697810..4698586 1 NC_016856.1 putative inner membrane protein 4698586 588858005432 STM14_5334 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240764.1 4697810 D 588858 CDS YP_005240765.1 378453405 4698598..4699242 1 NC_016856.1 putative inner membrane protein 4699242 588858005433 STM14_5335 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240765.1 4698598 D 588858 CDS YP_005240766.1 378453406 4699301..4700434 1 NC_016856.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 4700434 588858005434 STM14_5336 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S dihydroorotase YP_005240766.1 4699301 D 588858 CDS YP_005240767.1 378453407 4700418..4701536 1 NC_016856.1 L-seryl-tRNA selenium transferase; putative selenocysteine synthase 4701536 588858005435 STM14_5337 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative selenocysteine synthase YP_005240767.1 4700418 D 588858 CDS YP_005240768.1 378453408 4701533..4702273 1 NC_016856.1 4-hydroxy-2-oxoglutarate aldolase 4702273 588858005436 STM14_5338 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 4-hydroxy-2-oxoglutarate aldolase YP_005240768.1 4701533 D 588858 CDS YP_005240769.1 378453409 4702290..4704203 1 NC_016856.1 Ntr-type; phosphotransferase system mannitol/fructose-specific IIA component 4704203 588858005437 STM14_5339 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphotransferase system mannitol/fructose-specific IIA component YP_005240769.1 4702290 D 588858 CDS YP_005240770.1 378453410 4704281..4704523 1 NC_016856.1 Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 4704523 588858005438 STM14_5340 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S bifunctional antitoxin/transcriptional repressor RelB YP_005240770.1 4704281 D 588858 CDS YP_005240771.1 378453411 4704513..4704797 1 NC_016856.1 putative inner membrane protein 4704797 588858005439 STM14_5341 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240771.1 4704513 D 588858 CDS YP_005240772.1 378453412 complement(4704801..4705265) 1 NC_016856.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 4705265 nrdG 588858005440 nrdG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S anaerobic ribonucleotide reductase-activating protein YP_005240772.1 4704801 R 588858 CDS YP_005240773.1 378453413 complement(4705386..4707524) 1 NC_016856.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 4707524 nrdD 588858005441 nrdD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S anaerobic ribonucleoside triphosphate reductase YP_005240773.1 4705386 R 588858 CDS YP_005240774.1 378453414 4707729..4707899 1 NC_016856.1 hypothetical protein 4707899 588858005442 STM14_5344 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240774.1 4707729 D 588858 CDS YP_005240775.1 378453415 complement(4707933..4709585) 1 NC_016856.1 similar to Escherichia coli trehalase 6-P hydrolase (AAC77196.1); alternative inducer of maltose system; cytoplasmic; trehalose-6-phosphate hydrolase 4709585 treC 588858005443 treC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S trehalose-6-phosphate hydrolase YP_005240775.1 4707933 R 588858 CDS YP_005240776.1 378453416 4711078..4711185 1 NC_016856.1 hypothetical protein 4711185 588858005445 STM14_5347 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240776.1 4711078 D 588858 CDS YP_005240777.2 410023223 complement(4711190..4712137) 1 NC_016856.1 regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; trehalose repressor 4712137 treR 588858005446 treR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S trehalose repressor YP_005240777.2 4711190 R 588858 CDS YP_005240778.1 378453418 4712521..4715229 1 NC_016856.1 P-type ATPase involved in magnesium influx; magnesium-transporting ATPase MgtA 4715229 mgtA 588858005447 mgtA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S magnesium-transporting ATPase MgtA YP_005240778.1 4712521 D 588858 CDS YP_005240779.1 378453419 complement(4715345..4715791) 1 NC_016856.1 putative transposase 4715791 588858005448 STM14_5350 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transposase YP_005240779.1 4715345 R 588858 CDS YP_005240780.1 378453420 complement(4715866..4716252) 1 NC_016856.1 putative translation initiation inhibitor 4716252 yjgF 588858005449 yjgF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative translation initiation inhibitor YP_005240780.1 4715866 R 588858 CDS YP_005240781.1 378453421 complement(4716329..4716790) 1 NC_016856.1 involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit 4716790 pyrI 588858005450 pyrI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aspartate carbamoyltransferase regulatory subunit YP_005240781.1 4716329 R 588858 CDS YP_005240782.1 378453422 complement(4716803..4717738) 1 NC_016856.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 4717738 pyrB 588858005451 pyrB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S aspartate carbamoyltransferase catalytic subunit YP_005240782.1 4716803 R 588858 CDS YP_005240783.1 378453423 complement(4717774..4717875) 1 NC_016856.1 pyrBI operon leader peptide (attenuator) (SW:LPPY_SALTY); contains a frameshift and premature stop as compared to Escherichia coli pyrBI operon leader peptide; pyrBI operon leader peptide 4717875 pyrL 588858005452 pyrL Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyrBI operon leader peptide YP_005240783.1 4717774 R 588858 CDS YP_005240784.1 378453424 complement(4717965..4718453) 1 NC_016856.1 similar to Escherichia coli repressor of arg regulon; cer-mediated site specific recombination (AAC76269.1); putative arginine repressor 4718453 588858005453 STM14_5355 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative arginine repressor YP_005240784.1 4717965 R 588858 CDS YP_005240785.1 378453425 complement(4718450..4718566) 1 NC_016856.1 hypothetical protein 4718566 588858005454 STM14_5356 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240785.1 4718450 R 588858 CDS YP_005240786.1 378453426 complement(4718640..4720043) 1 NC_016856.1 similar to Escherichia coli putative S-transferase (AAC75358.1); putative arginine repressor 4720043 588858005455 STM14_5357 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative arginine repressor YP_005240786.1 4718640 R 588858 CDS YP_005240787.1 378453427 complement(4720099..4721103) 1 NC_016856.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 4721103 588858005456 STM14_5358 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ornithine carbamoyltransferase YP_005240787.1 4720099 R 588858 CDS YP_005240788.1 378453428 complement(4721103..4721225) 1 NC_016856.1 hypothetical protein 4721225 588858005457 STM14_5359 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240788.1 4721103 R 588858 CDS YP_005240789.1 378453429 complement(4721215..4722147) 1 NC_016856.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 4722147 588858005458 STM14_5360 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S carbamate kinase YP_005240789.1 4721215 R 588858 CDS YP_005240790.1 378453430 complement(4722158..4723378) 1 NC_016856.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 4723378 588858005459 STM14_5361 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S arginine deiminase YP_005240790.1 4722158 R 588858 CDS YP_005240791.1 378453431 4723479..4723670 1 NC_016856.1 hypothetical protein 4723670 588858005460 STM14_5362 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240791.1 4723479 D 588858 CDS YP_005240792.1 378453432 4724054..4724506 1 NC_016856.1 putative cytoplasmic protein 4724506 yjgK 588858005461 yjgK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240792.1 4724054 D 588858 CDS YP_005240793.1 378453433 complement(4724580..4725584) 1 NC_016856.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.; ornithine carbamoyltransferase subunit I 4725584 argI 588858005462 argI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ornithine carbamoyltransferase subunit I YP_005240793.1 4724580 R 588858 CDS YP_005240794.1 378453434 4725750..4726166 1 NC_016856.1 hypothetical 15.7 dda protein in argI-miaE intergenic region (ORF15.6) (SW:YJGD_SALTY); hypothetical protein 4726166 yjgD 588858005463 yjgD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240794.1 4725750 D 588858 CDS YP_005240795.1 378453435 4726178..4726990 1 NC_016856.1 tRNA-hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA (SW:MIAE_SALTY); hydroxylase 4726990 miaE 588858005464 miaE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hydroxylase YP_005240795.1 4726178 D 588858 CDS YP_005240796.1 378453436 complement(4727023..4727145) 1 NC_016856.1 hypothetical protein 4727145 588858005465 STM14_5367 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240796.1 4727023 R 588858 CDS YP_005240797.1 378453437 complement(4727224..4727712) 1 NC_016856.1 hypothetical 17.8 kKa protein in miaE 3'region (ORF 17.8) (SW:YTGA_SALTY); putative inner membrane protein 4727712 ytgA 588858005466 ytgA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240797.1 4727224 R 588858 CDS YP_005240798.1 378453438 complement(4727819..4728322) 1 NC_016856.1 hypothetical 18.3 kDa protein in miaE 3'region (ORF 18.3) (SW:YJGM_SALTY); putative acetyltransferase 4728322 yjgM 588858005467 yjgM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative acetyltransferase YP_005240798.1 4727819 R 588858 CDS YP_005240799.1 378453439 4728517..4729704 1 NC_016856.1 hypothetical protein in miaE 3'region (ORF x) (SW:YJGN_SALTY); putative inner membrane protein 4729704 yjgN 588858005468 yjgN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240799.1 4728517 D 588858 CDS YP_005240800.1 378453440 complement(4729846..4732701) 1 NC_016856.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 4732701 valS 588858005469 valS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S valyl-tRNA synthetase YP_005240800.1 4729846 R 588858 CDS YP_005240801.1 378453441 complement(4732701..4733144) 1 NC_016856.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 4733144 holC 588858005470 holC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA polymerase III subunit chi YP_005240801.1 4732701 R 588858 CDS YP_005240802.1 378453442 complement(4733281..4734792) 1 NC_016856.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 4734792 pepA 588858005471 pepA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S leucyl aminopeptidase YP_005240802.1 4733281 R 588858 CDS YP_005240803.1 378453443 complement(4734836..4734955) 1 NC_016856.1 putative cytoplasmic protein 4734955 588858005472 STM14_5374 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240803.1 4734836 R 588858 CDS YP_005240804.1 378453444 4735187..4736287 1 NC_016856.1 putative permease 4736287 yjgP 588858005473 yjgP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005240804.1 4735187 D 588858 CDS YP_005240805.1 378453445 4736287..4737369 1 NC_016856.1 putative permease 4737369 yjgQ 588858005474 yjgQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative permease YP_005240805.1 4736287 D 588858 CDS YP_005240806.1 378453446 complement(4737564..4738562) 1 NC_016856.1 similar to Escherichia coli L-idonate transcriptional regulator (AAC77221.1); GalR/LacI family; L-idonate regulator 4738562 idnR 588858005475 idnR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-idonate regulator YP_005240806.1 4737564 R 588858 CDS YP_005240807.1 378453447 complement(4738626..4739945) 1 NC_016856.1 similar to Escherichia coli L-idonate transporter (AAC77222.1); GntP family; L-idonate transport protein 4739945 idnT 588858005476 idnT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-idonate transport protein YP_005240807.1 4738626 R 588858 CDS YP_005240808.1 378453448 complement(4740007..4740771) 1 NC_016856.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 4740771 idnO 588858005477 idnO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S gluconate 5-dehydrogenase YP_005240808.1 4740007 R 588858 CDS YP_005240809.1 378453449 complement(4740796..4741827) 1 NC_016856.1 NAD-binding; L-idonate 5-dehydrogenase 4741827 idnD 588858005478 idnD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S L-idonate 5-dehydrogenase YP_005240809.1 4740796 R 588858 CDS YP_005240810.1 378453450 4741810..4741944 1 NC_016856.1 hypothetical protein 4741944 588858005479 STM14_5381 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240810.1 4741810 D 588858 CDS YP_005240811.1 378453451 4742044..4742574 1 NC_016856.1 similar to Escherichia coli gluconate kinase, thermosensitive glucokinase (AAC77225.1); D-gluconate kinase 4742574 idnK 588858005480 idnK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S D-gluconate kinase YP_005240811.1 4742044 D 588858 CDS YP_005240812.1 378453452 complement(4742602..4743621) 1 NC_016856.1 similar to Escherichia coli putative oxidoreductase (AAC77226.1); putative alcohol dehydrogenase 4743621 yjgB 588858005481 yjgB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative alcohol dehydrogenase YP_005240812.1 4742602 R 588858 CDS YP_005240813.1 378453453 4744147..4744434 1 NC_016856.1 similar to Escherichia coli putative prophage integrase (AAC75495.1); putative integrase 4744434 588858005483 STM14_5385 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative integrase YP_005240813.1 4744147 D 588858 CDS YP_005240814.1 378453454 4744796..4748311 1 NC_016856.1 similar to Escherichia coli putative frameshift suppressor (AAC77264.1); superfamily I; putative DNA helicase 4748311 588858005484 STM14_5386 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA helicase YP_005240814.1 4744796 D 588858 CDS YP_005240815.1 378453455 4748408..4749397 1 NC_016856.1 Mrr; putative restriction endonuclease 4749397 588858005485 STM14_5387 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative restriction endonuclease YP_005240815.1 4748408 D 588858 CDS YP_005240816.1 378453456 complement(4749510..4751594) 1 NC_016856.1 similar to Escherichia coli DNA-binding, ATP-dependent protease La; heat shock K-protein (AAC73542.1); putative ATP-dependent Lon protease 4751594 588858005486 STM14_5388 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ATP-dependent Lon protease YP_005240816.1 4749510 R 588858 CDS YP_005240817.1 378453457 complement(4751605..4754202) 1 NC_016856.1 putative cytoplasmic protein 4754202 588858005487 STM14_5389 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240817.1 4751605 R 588858 CDS YP_005240818.1 378453458 complement(4754205..4755026) 1 NC_016856.1 putative cytoplasmic protein 4755026 588858005488 STM14_5390 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240818.1 4754205 R 588858 CDS YP_005240819.1 378453459 complement(4755004..4756095) 1 NC_016856.1 putative ABC-type sugar/spermidine/putrescine transport system ATPase component 4756095 588858005489 STM14_5391 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC-type sugar/spermidine/putrescine transport system ATPase component YP_005240819.1 4755004 R 588858 CDS YP_005240820.1 378453460 complement(4756095..4759772) 1 NC_016856.1 putative type II restriction enzyme methylase subunit 4759772 588858005490 STM14_5392 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative type II restriction enzyme methylase subunit YP_005240820.1 4756095 R 588858 CDS YP_005240821.1 378453461 complement(4759818..4763459) 1 NC_016856.1 putative DNA repair ATPase 4763459 588858005491 STM14_5393 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA repair ATPase YP_005240821.1 4759818 R 588858 CDS YP_005240822.1 378453462 complement(4763471..4764073) 1 NC_016856.1 putative cytoplasmic protein 4764073 588858005492 STM14_5394 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240822.1 4763471 R 588858 CDS YP_005240823.1 378453463 complement(4764070..4764672) 1 NC_016856.1 putative inner membrane protein 4764672 588858005493 STM14_5395 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240823.1 4764070 R 588858 CDS YP_005240824.1 378453464 complement(4764865..4765110) 1 NC_016856.1 molybdopterin-guanine dinucleotide biosynthesis protein MobA 4765110 588858005494 STM14_5396 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_005240824.1 4764865 R 588858 CDS YP_005240825.1 378453465 complement(4765498..4766214) 1 NC_016856.1 hypothetical protein 4766214 yeeN 588858005496 yeeN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240825.1 4765498 R 588858 CDS YP_005240826.1 378453466 4766523..4766714 1 NC_016856.1 hypothetical protein 4766714 588858005497 STM14_5399 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240826.1 4766523 D 588858 CDS YP_005240827.1 378453467 complement(4766774..4768405) 1 NC_016856.1 similar to Escherichia coli putative methyltransferase (AAC77262.1); putative SAM-dependent methyltransferase 4768405 yjhP 588858005498 yjhP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative SAM-dependent methyltransferase YP_005240827.1 4766774 R 588858 CDS YP_005240828.1 378453468 complement(4768410..4768667) 1 NC_016856.1 hypothetical protein 4768667 588858005499 STM14_5401 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240828.1 4768410 R 588858 CDS YP_005240829.1 378453469 complement(4768806..4769102) 1 NC_016856.1 hypothetical protein 4769102 588858005500 STM14_5402 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240829.1 4768806 R 588858 CDS YP_005240830.1 378453470 4769156..4769764 1 NC_016856.1 putative cytoplasmic protein 4769764 588858005501 STM14_5403 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240830.1 4769156 D 588858 CDS YP_005240831.1 378453471 4770016..4771011 1 NC_016856.1 putative inner membrane protein 4771011 588858005502 STM14_5404 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240831.1 4770016 D 588858 CDS YP_005240832.1 378453472 4771287..4772198 1 NC_016856.1 IicA (gi|5616506); putative cytoplasmic protein 4772198 588858005503 STM14_5405 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240832.1 4771287 D 588858 CDS YP_005240833.1 378453473 4772201..4772314 1 NC_016856.1 hypothetical protein 4772314 588858005504 STM14_5406 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240833.1 4772201 D 588858 CDS YP_005240834.1 378453474 complement(4772241..4772357) 1 NC_016856.1 hypothetical protein 4772357 588858005505 STM14_5407 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240834.1 4772241 R 588858 CDS YP_005240835.1 378453475 4772403..4772864 1 NC_016856.1 putative inner membrane or exported; hypothetical protein 4772864 588858005506 STM14_5408 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240835.1 4772403 D 588858 CDS YP_005240836.1 378453476 complement(4772861..4773535) 1 NC_016856.1 putative dienelactone hydrolase 4773535 588858005507 STM14_5409 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative dienelactone hydrolase YP_005240836.1 4772861 R 588858 CDS YP_005240837.1 378453477 4773638..4773850 1 NC_016856.1 hypothetical protein 4773850 588858005508 STM14_5410 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240837.1 4773638 D 588858 CDS YP_005240838.1 378453478 4773885..4774658 1 NC_016856.1 regulates the expression of uxuBA; DNA-binding transcriptional repressor UxuR 4774658 uxuR 588858005509 uxuR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional repressor UxuR YP_005240838.1 4773885 D 588858 CDS YP_005240839.1 378453479 complement(4774659..4775672) 1 NC_016856.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II 4775672 trpS2 588858005510 trpS2 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S tryptophanyl-tRNA synthetase II YP_005240839.1 4774659 R 588858 CDS YP_005240840.1 378453480 4775969..4776121 1 NC_016856.1 hypothetical protein 4776121 588858005511 STM14_5413 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240840.1 4775969 D 588858 CDS YP_005240841.1 378453481 4776390..4776920 1 NC_016856.1 putative hyperinvasive locus E 4776920 588858005512 STM14_5414 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative hyperinvasive locus E YP_005240841.1 4776390 D 588858 CDS YP_005240842.1 378453482 4776954..4777076 1 NC_016856.1 hypothetical protein 4777076 588858005513 STM14_5415 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240842.1 4776954 D 588858 CDS YP_005240843.1 378453483 complement(4776976..4777107) 1 NC_016856.1 hypothetical protein 4777107 588858005514 STM14_5416 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240843.1 4776976 R 588858 CDS YP_005240844.1 378453484 4777159..4777893 1 NC_016856.1 similar to Escherichia coli putative resistance proteins (AAC75879.1); putative aspartate racemase 4777893 588858005515 STM14_5417 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative aspartate racemase YP_005240844.1 4777159 D 588858 CDS YP_005240845.1 378453485 complement(4777899..4778807) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator LysR-type (AAC77283.1); LysR family; putative DNA-binding transcriptional regulator 4778807 yjiE 588858005516 yjiE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative DNA-binding transcriptional regulator YP_005240845.1 4777899 R 588858 CDS YP_005240846.1 378453486 complement(4778926..4780098) 1 NC_016856.1 similar to Escherichia coli isoaspartyl dipeptidase (AAC77284.1); isoaspartyl dipeptidase 4780098 iadA 588858005517 iadA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S isoaspartyl dipeptidase YP_005240846.1 4778926 R 588858 CDS YP_005240847.1 378453487 complement(4780111..4780572) 1 NC_016856.1 hypothetical protein 4780572 yjiG 588858005518 yjiG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240847.1 4780111 R 588858 CDS YP_005240848.1 378453488 complement(4780569..4781453) 1 NC_016856.1 putative inner membrane protein 4781453 yjiH 588858005519 yjiH Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240848.1 4780569 R 588858 CDS YP_005240849.1 378453489 complement(4782113..4783297) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC77288.1); putative sugar transporter 4783297 yjiJ 588858005520 yjiJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative sugar transporter YP_005240849.1 4782113 R 588858 CDS YP_005240850.1 378453490 complement(4783149..4783325) 1 NC_016856.1 hypothetical protein 4783325 588858005521 STM14_5423 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240850.1 4783149 R 588858 CDS YP_005240851.1 378453491 complement(4783517..4784788) 1 NC_016856.1 putative inner membrane protein 4784788 yjiN 588858005522 yjiN Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240851.1 4783517 R 588858 CDS YP_005240852.1 378453492 complement(4784875..4786116) 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC77293.1); MFS family; putative transport protein 4786116 yjiO 588858005523 yjiO Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transport protein YP_005240852.1 4784875 R 588858 CDS YP_005240853.1 378453493 complement(4786173..4786316) 1 NC_016856.1 hypothetical protein 4786316 588858005524 STM14_5426 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240853.1 4786173 R 588858 CDS YP_005240854.1 378453494 4786386..4786523 1 NC_016856.1 hypothetical protein 4786523 588858005525 STM14_5427 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240854.1 4786386 D 588858 CDS YP_005240855.1 378453495 4786595..4787110 1 NC_016856.1 putative inner membrane protein 4787110 588858005526 STM14_5428 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240855.1 4786595 D 588858 CDS YP_005240856.1 378453496 complement(4787107..4787220) 1 NC_016856.1 hypothetical protein 4787220 588858005527 STM14_5429 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240856.1 4787107 R 588858 CDS YP_005240857.1 378453497 4787291..4788661 1 NC_016856.1 similar to Escherichia coli putative aldehyde dehydrogenase (AAC74598.1); putative NAD-dependent aldehyde dehydrogenase 4788661 588858005528 STM14_5430 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative NAD-dependent aldehyde dehydrogenase YP_005240857.1 4787291 D 588858 CDS YP_005240858.1 378453498 complement(4788756..4788899) 1 NC_016856.1 putative cytoplasmic protein 4788899 588858005529 STM14_5431 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240858.1 4788756 R 588858 CDS YP_005240859.1 378453499 4788866..4789030 1 NC_016856.1 putative cytoplasmic protein 4789030 yjiS 588858005530 yjiS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240859.1 4788866 D 588858 CDS YP_005240860.1 378453500 complement(4789105..4789806) 1 NC_016856.1 putative inner membrane protein 4789806 588858005531 STM14_5433 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240860.1 4789105 R 588858 CDS YP_005240861.1 378453501 complement(4789880..4790212) 1 NC_016856.1 involved in the degradation of RNA; may be involved in the recycling of RNA during the SOS response; endoribonuclease SymE 4790212 yjiW 588858005532 yjiW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S endoribonuclease SymE YP_005240861.1 4789880 R 588858 CDS YP_005240862.1 378453502 complement(4790281..4790412) 1 NC_016856.1 hypothetical protein 4790412 588858005533 STM14_5435 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240862.1 4790281 R 588858 CDS YP_005240863.1 378453503 complement(4790439..4791848) 1 NC_016856.1 S protein; STYSJI specificity protein (SW:T1S_SALTY); specificity determinant for hsdM and hsdR; type I restriction enzyme specificity protein 4791848 hsdS 588858005534 hsdS Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S type I restriction enzyme specificity protein YP_005240863.1 4790439 R 588858 CDS YP_005240864.1 378453504 complement(4791845..4793434) 1 NC_016856.1 type I restriction enzyme STYSJI Mm protein (SW:T1M_SALTY); host modification; DNA methylase M 4793434 hsdM 588858005535 hsdM Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA methylase M YP_005240864.1 4791845 R 588858 CDS YP_005240865.1 378453505 complement(4793592..4797101) 1 NC_016856.1 restriction endonuclease; the EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'; subunit R is required for both nuclease and ATPase activities; type I restriction enzyme EcoKI subunit R 4797101 hsdR 588858005536 hsdR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S type I restriction enzyme EcoKI subunit R YP_005240865.1 4793592 R 588858 CDS YP_005240866.1 378453506 4797299..4798213 1 NC_016856.1 similar to Escherichia coli restriction of methylated adenine (AAC77307.1); restriction of methylated adenine; restriction endonuclease 4798213 mrr 588858005537 mrr Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S restriction endonuclease YP_005240866.1 4797299 D 588858 CDS YP_005240867.1 378453507 4798305..4798442 1 NC_016856.1 hypothetical protein 4798442 588858005538 STM14_5440 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240867.1 4798305 D 588858 CDS YP_005240868.1 378453508 4798482..4798769 1 NC_016856.1 putative inner membrane protein 4798769 588858005539 STM14_5441 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240868.1 4798482 D 588858 CDS YP_005240869.1 378453509 4798756..4799058 1 NC_016856.1 putative cytoplasmic protein 4799058 588858005540 STM14_5442 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240869.1 4798756 D 588858 CDS YP_005240870.1 378453510 complement(4799133..4800089) 1 NC_016856.1 putative GTP-binding protein YjiA 4800089 yjiA 588858005541 yjiA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative GTP-binding protein YjiA YP_005240870.1 4799133 R 588858 CDS YP_005240871.1 378453511 complement(4800100..4800303) 1 NC_016856.1 putative cytoplasmic protein 4800303 yjiX 588858005542 yjiX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240871.1 4800100 R 588858 CDS YP_005240872.1 378453512 complement(4800398..4802548) 1 NC_016856.1 similar to Escherichia coli putative carbon starvation protein (AAC77310.1); putative carbon starvation protein 4802548 yjiY 588858005543 yjiY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative carbon starvation protein YP_005240872.1 4800398 R 588858 CDS YP_005240873.1 378453513 4802915..4804576 1 NC_016856.1 similar to Escherichia coli methyl-accepting chemotaxis protein I; serine sensor receptor (AAC77311.1); methyl-accepting chemotaxis protein I 4804576 tsr 588858005544 tsr Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S methyl-accepting chemotaxis protein I YP_005240873.1 4802915 D 588858 CDS YP_005240874.1 378453514 complement(4804689..4804838) 1 NC_016856.1 hypothetical protein 4804838 588858005545 STM14_5447 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240874.1 4804689 R 588858 CDS YP_005240875.1 378453515 4804900..4807665 1 NC_016856.1 similar to Escherichia coli psp operon transcriptional activator (AAC74385.1); NtrC family; contains ATPase domain; putative transcriptional regulator 4807665 588858005546 STM14_5448 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005240875.1 4804900 D 588858 CDS YP_005240876.1 378453516 4807767..4808189 1 NC_016856.1 similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1); putative PTS permease 4808189 588858005547 STM14_5449 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative PTS permease YP_005240876.1 4807767 D 588858 CDS YP_005240877.1 378453517 4808204..4808665 1 NC_016856.1 similar to Escherichia coli PTS enzyme IIAB, mannose-specific (AAC74887.1); putative PTS permease 4808665 588858005548 STM14_5450 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative PTS permease YP_005240877.1 4808204 D 588858 CDS YP_005240878.1 378453518 4808691..4809470 1 NC_016856.1 similar to Escherichia coli PTS system N-acetylgalactosamine-specific IIC component 1 (AAC76173.1); putative PTS permease 4809470 588858005549 STM14_5451 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative PTS permease YP_005240878.1 4808691 D 588858 CDS YP_005240879.1 378453519 4809460..4810296 1 NC_016856.1 similar to Escherichia coli PTS enzyme IID; mannose-specific (AAC74889.1); putative PTS permease 4810296 588858005550 STM14_5452 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative PTS permease YP_005240879.1 4809460 D 588858 CDS YP_005240880.1 378453520 4810309..4811370 1 NC_016856.1 similar to Escherichia coli L-glutamine:D-fructose-6-phosphate aminotransferase (AAC76752.1); putative glucosamine-fructose-6-phosphate aminotransferase 4811370 588858005551 STM14_5453 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glucosamine-fructose-6-phosphate aminotransferase YP_005240880.1 4810309 D 588858 CDS YP_005240881.1 378453521 4811388..4812398 1 NC_016856.1 similar to Escherichia coli putative transport protein (AAC76396.1); putative glucosamine-fructose-6-phosphate aminotransferase 4812398 588858005552 STM14_5454 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative glucosamine-fructose-6-phosphate aminotransferase YP_005240881.1 4811388 D 588858 CDS YP_005240882.1 378453522 4812431..4812535 1 NC_016856.1 hypothetical protein 4812535 588858005553 STM14_5455 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240882.1 4812431 D 588858 CDS YP_005240883.1 378453523 complement(4812532..4814823) 1 NC_016856.1 catalyzes the transfer of phosphoglycerol to the glucan backbone; phosphoglycerol transferase I 4814823 mdoB 588858005554 mdoB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoglycerol transferase I YP_005240883.1 4812532 R 588858 CDS YP_005240884.1 378453524 complement(4815106..4815567) 1 NC_016856.1 similar to Escherichia coli putative glycoprotein/receptor (AAC77316.1); hypothetical protein 4815567 yjjA 588858005555 yjjA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240884.1 4815106 R 588858 CDS YP_005240885.1 378453525 complement(4815625..4816362) 1 NC_016856.1 acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 4816362 dnaC 588858005556 dnaC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA replication protein DnaC YP_005240885.1 4815625 R 588858 CDS YP_005240886.1 378453526 complement(4816365..4816904) 1 NC_016856.1 This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'; primosomal protein I 4816904 dnaT 588858005557 dnaT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S primosomal protein I YP_005240886.1 4816365 R 588858 CDS YP_005240887.1 378453527 complement(4816997..4817470) 1 NC_016856.1 hypothetical protein 4817470 588858005558 STM14_5460 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240887.1 4816997 R 588858 CDS YP_005240888.1 378453528 complement(4817461..4818372) 1 NC_016856.1 similar to Escherichia coli putative structural protein (AAC77320.1); hypothetical protein 4818372 yjjP 588858005559 yjjP Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240888.1 4817461 R 588858 CDS YP_005240889.1 378453529 complement(4818419..4818574) 1 NC_016856.1 hypothetical protein 4818574 588858005560 STM14_5462 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240889.1 4818419 R 588858 CDS YP_005240890.1 378453530 4818950..4819675 1 NC_016856.1 similar to Escherichia coli putative regulator (AAC77321.1); LuxR/UhpA family; putative transcriptional regulator 4819675 yjjQ 588858005561 yjjQ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative transcriptional regulator YP_005240890.1 4818950 D 588858 CDS YP_005240891.1 378453531 4819687..4820310 1 NC_016856.1 regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin; DNA-binding transcriptional activator BglJ 4820310 bglJ 588858005562 bglJ Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding transcriptional activator BglJ YP_005240891.1 4819687 D 588858 CDS YP_005240892.1 378453532 complement(4820361..4820819) 1 NC_016856.1 putative cytoplasmic protein 4820819 588858005563 STM14_5465 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative cytoplasmic protein YP_005240892.1 4820361 R 588858 CDS YP_005240893.1 378453533 complement(4820970..4821758) 1 NC_016856.1 involved in reduction of ferric iron in cytoplasmic ferrioxamine B; ferric hydroximate transport ferric iron reductase 4821758 fhuF 588858005564 fhuF Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ferric hydroximate transport ferric iron reductase YP_005240893.1 4820970 R 588858 CDS YP_005240894.1 378453534 complement(4821879..4822943) 1 NC_016856.1 contains putative diguanylate cyclase/phosphodiesterase domain 1; hypothetical protein 4822943 588858005565 STM14_5467 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240894.1 4821879 R 588858 CDS YP_005240895.1 378453535 4823006..4823134 1 NC_016856.1 hypothetical protein 4823134 588858005566 STM14_5468 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240895.1 4823006 D 588858 CDS YP_005240896.1 378453536 4823194..4823430 1 NC_016856.1 putative inner membrane protein 4823430 588858005567 STM14_5469 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240896.1 4823194 D 588858 CDS YP_005240897.1 378453537 complement(4823971..4824999) 1 NC_016856.1 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase 4824999 rsmC 588858005571 rsmC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 16S ribosomal RNA m2G1207 methyltransferase YP_005240897.1 4823971 R 588858 CDS YP_005240898.1 378453538 4824998..4825105 1 NC_016856.1 hypothetical protein 4825105 588858005572 STM14_5474 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240898.1 4824998 D 588858 CDS YP_005240899.1 378453539 4825102..4825539 1 NC_016856.1 with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 4825539 holD 588858005573 holD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA polymerase III subunit psi YP_005240899.1 4825102 D 588858 CDS YP_005240900.1 378453540 4825484..4825930 1 NC_016856.1 alanine acetyltransferase that specifically acetylates ribosomal protein S18; ribosomal-protein-alanine N-acetyltransferase 4825930 rimI 588858005574 rimI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S ribosomal-protein-alanine N-acetyltransferase YP_005240900.1 4825484 D 588858 CDS YP_005240901.1 378453541 4825952..4826629 1 NC_016856.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 4826629 yjjG 588858005575 yjjG Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nucleotidase YP_005240901.1 4825952 D 588858 CDS YP_005240902.1 378453542 4826721..4828310 1 NC_016856.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4828310 prfC 588858005576 prfC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S peptide chain release factor 3 YP_005240902.1 4826721 D 588858 CDS YP_005240903.1 378453543 4828502..4828636 1 NC_016856.1 hypothetical protein 4828636 588858005577 STM14_5479 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240903.1 4828502 D 588858 CDS YP_005240904.1 378453544 4828712..4829329 1 NC_016856.1 similar to Escherichia coli hyperosmotically inducible periplasmic protein (AAC77329.1); RpoS-dependent stationary phase gene; hypothetical protein 4829329 osmY 588858005578 osmY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240904.1 4828712 D 588858 CDS YP_005240905.1 378453545 4829440..4829619 1 NC_016856.1 hypothetical protein 4829619 588858005579 STM14_5481 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240905.1 4829440 D 588858 CDS YP_005240906.1 378453546 4829743..4830816 1 NC_016856.1 putative phosphoesterase 4830816 yjjU 588858005580 yjjU Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative phosphoesterase YP_005240906.1 4829743 D 588858 CDS YP_005240907.1 378453547 4830813..4831586 1 NC_016856.1 putative deoxyribonuclease YjjV 4831586 yjjV 588858005581 yjjV Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative deoxyribonuclease YjjV YP_005240907.1 4830813 D 588858 CDS YP_005240908.1 378453548 complement(4831619..4832482) 1 NC_016856.1 similar to Escherichia coli putative activating enzyme (AAC77332.1); pyruvate formate lyase-activating enzyme 4832482 yjjW 588858005582 yjjW Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S pyruvate formate lyase-activating enzyme YP_005240908.1 4831619 R 588858 CDS YP_005240909.1 378453549 complement(4832454..4834004) 1 NC_016856.1 hypothetical protein 4834004 yjjI 588858005583 yjjI Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240909.1 4832454 R 588858 CDS YP_005240910.1 378453550 4833992..4834120 1 NC_016856.1 hypothetical protein 4834120 588858005584 STM14_5486 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240910.1 4833992 D 588858 CDS YP_005240911.1 378453551 4834246..4835043 1 NC_016856.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 4835043 deoC 588858005585 deoC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S deoxyribose-phosphate aldolase YP_005240911.1 4834246 D 588858 CDS YP_005240912.1 378453552 4835059..4836489 1 NC_016856.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 4836489 deoA 588858005586 deoA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S thymidine phosphorylase YP_005240912.1 4835059 D 588858 CDS YP_005240913.1 378453553 4836541..4837764 1 NC_016856.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 4837764 deoB 588858005587 deoB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphopentomutase YP_005240913.1 4836541 D 588858 CDS YP_005240914.1 378453554 4837974..4838693 1 NC_016856.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 4838693 deoD 588858005588 deoD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S purine nucleoside phosphorylase YP_005240914.1 4837974 D 588858 CDS YP_005240915.1 378453555 complement(4838731..4839303) 1 NC_016856.1 putative outer membrane protein 4839303 588858005589 STM14_5491 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005240915.1 4838731 R 588858 CDS YP_005240916.1 378453556 complement(4839300..4841708) 1 NC_016856.1 similar to Escherichia coli putative outer membrane protein (AAC76248.1); putative fimbrial usher protein 4841708 stjB 588858005590 stjB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial usher protein YP_005240916.1 4839300 R 588858 CDS YP_005240917.1 378453557 complement(4841722..4842429) 1 NC_016856.1 member of the periplasmic pilus chaperone family of proteins; putative periplasmic chaperone protein 4842429 stjC 588858005591 stjC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative periplasmic chaperone protein YP_005240917.1 4841722 R 588858 CDS YP_005240918.1 378453558 complement(4842507..4843196) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator (AAC76251.1); putative outer membrane protein 4843196 588858005592 STM14_5494 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005240918.1 4842507 R 588858 CDS YP_005240919.1 378453559 complement(4843244..4843933) 1 NC_016856.1 similar to Escherichia coli putative transcriptional regulator (AAC76251.1); putative outer membrane protein 4843933 588858005593 STM14_5495 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative outer membrane protein YP_005240919.1 4843244 R 588858 CDS YP_005240920.1 378453560 4843995..4844144 1 NC_016856.1 hypothetical protein 4844144 588858005594 STM14_5496 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240920.1 4843995 D 588858 CDS YP_005240921.1 378453561 complement(4844246..4845262) 1 NC_016856.1 Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins; lipoate-protein ligase A 4845262 lplA 588858005595 lplA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lipoate-protein ligase A YP_005240921.1 4844246 R 588858 CDS YP_005240922.1 378453562 complement(4845296..4845940) 1 NC_016856.1 membrane protein; transcribed divergently from serB; hypothetical protein 4845940 smp 588858005596 smp Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240922.1 4845296 R 588858 CDS YP_005240923.1 378453563 4846057..4847025 1 NC_016856.1 catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 4847025 serB 588858005597 serB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoserine phosphatase YP_005240923.1 4846057 D 588858 CDS YP_005240924.1 378453564 4847109..4848491 1 NC_016856.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 4848491 radA 588858005598 radA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA repair protein RadA YP_005240924.1 4847109 D 588858 CDS YP_005240925.1 378453565 4848561..4849874 1 NC_016856.1 catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase 4849874 nadR 588858005599 nadR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S nicotinamide-nucleotide adenylyltransferase YP_005240925.1 4848561 D 588858 CDS YP_005240926.1 378453566 complement(4849992..4851659) 1 NC_016856.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 4851659 yjjK 588858005600 yjjK Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative ABC transporter ATP-binding protein YP_005240926.1 4849992 R 588858 CDS YP_005240927.1 378453567 4851868..4853805 1 NC_016856.1 catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; lytic murein transglycosylase 4853805 slt 588858005601 slt Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S lytic murein transglycosylase YP_005240927.1 4851868 D 588858 CDS YP_005240928.1 378453568 4853863..4854189 1 NC_016856.1 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 4854189 trpR 588858005602 trpR Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Trp operon repressor YP_005240928.1 4853863 D 588858 CDS YP_005240929.1 378453569 complement(4854291..4854806) 1 NC_016856.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 4854806 yjjX 588858005603 yjjX Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S NTPase YP_005240929.1 4854291 R 588858 CDS YP_005240930.1 378453570 4854855..4855502 1 NC_016856.1 catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; phosphoglycerate mutase 4855502 gpmB 588858005604 gpmB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S phosphoglycerate mutase YP_005240930.1 4854855 D 588858 CDS YP_005240931.1 378453571 complement(4855499..4856368) 1 NC_016856.1 similar to Escherichia coli right origin-binding protein (AAC77349.1); AraC/XylS family; transcriptional regulator 4856368 rob 588858005605 rob Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S transcriptional regulator YP_005240931.1 4855499 R 588858 CDS YP_005240932.1 378453572 4856580..4857053 1 NC_016856.1 hypothetical protein 4857053 creA 588858005606 creA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240932.1 4856580 D 588858 CDS YP_005240933.1 378453573 4857066..4857755 1 NC_016856.1 response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 4857755 creB 588858005607 creB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S DNA-binding response regulator CreB YP_005240933.1 4857066 D 588858 CDS YP_005240934.1 378453574 4857755..4859179 1 NC_016856.1 part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 4859179 creC 588858005608 creC Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S sensory histidine kinase CreC YP_005240934.1 4857755 D 588858 CDS YP_005240935.1 378453575 4859237..4860586 1 NC_016856.1 similar to Escherichia coli tolerance to colicin E2 (AAC77353.1); hypothetical protein 4860586 creD 588858005609 creD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240935.1 4859237 D 588858 CDS YP_005240936.1 378453576 complement(4860644..4861729) 1 NC_016856.1 putative major fimbrial subunit 4861729 sthE 588858005610 sthE Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative major fimbrial subunit YP_005240936.1 4860644 R 588858 CDS YP_005240937.1 378453577 complement(4861770..4862327) 1 NC_016856.1 similar to Escherichia coli fimbrial morphology (AAC77275.1); putative fimbrial subunit 4862327 sthD 588858005611 sthD Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial subunit YP_005240937.1 4861770 R 588858 CDS YP_005240938.1 378453578 complement(4862345..4864882) 1 NC_016856.1 similar to Escherichia coli putative outer membrane protein; export function (AAC73634.1); putative fimbrial usher protein 4864882 sthB 588858005612 sthB Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial usher protein YP_005240938.1 4862345 R 588858 CDS YP_005240939.1 378453579 complement(4864928..4865611) 1 NC_016856.1 similar to Escherichia coli periplasmic chaperone; required for type 1 fimbriae (AAC77272.1); putative fimbrial chaperone 4865611 sthA 588858005613 sthA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial chaperone YP_005240939.1 4864928 R 588858 CDS YP_005240940.1 378453580 complement(4865682..4866227) 1 NC_016856.1 similar to Escherichia coli fimbrial morphology (AAC77274.1); putative fimbrial chaperone 4866227 588858005614 STM14_5516 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative fimbrial chaperone YP_005240940.1 4865682 R 588858 CDS YP_005240941.1 378453581 complement(4866566..4867237) 1 NC_016856.1 putative inner membrane protein 4867237 588858005615 STM14_5517 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240941.1 4866566 R 588858 CDS YP_005240942.1 378453582 complement(4867622..4867936) 1 NC_016856.1 hypothetical protein 4867936 588858005616 STM14_5518 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S hypothetical protein YP_005240942.1 4867622 R 588858 CDS YP_005240943.1 378453583 complement(4868203..4868919) 1 NC_016856.1 similar to Escherichia coli negative response regulator of genes in aerobic pathways with sensors ArcB and CpxA (AAC77354.1); OmpR family; regulates genes in aerobic pathways; two-component response regulator 4868919 arcA 588858005617 arcA Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S two-component response regulator YP_005240943.1 4868203 R 588858 CDS YP_005240944.1 378453584 4869015..4869155 1 NC_016856.1 putative inner membrane protein 4869155 yjjY 588858005618 yjjY Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative inner membrane protein YP_005240944.1 4869015 D 588858 CDS YP_005240945.1 378453585 4869555..4870241 1 NC_016856.1 member of the SPOUT superfamily of methyltransferases; putative RNA methyltransferase 4870241 lasT 588858005619 lasT Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S putative RNA methyltransferase YP_005240945.1 4869555 D 588858 CDS