-- dump date 20140620_055246 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 99287000001 SEQ_END SEQ_END NC_003197.1 4857432 4857432 DR NC_003197.1; contig end 4857432..4857432 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 99287000002 SEQ_END SEQ_END NC_003277.1 93939 93939 DR NC_003277.1; contig end 93939..93939 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NP_459006.1 CDS thrL NC_003197.1 190 255 D thr operon leader peptide 190..255 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251519 NP_459007.1 CDS thrA NC_003197.1 337 2799 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 337..2799 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251520 NP_459008.1 CDS thrB NC_003197.1 2801 3730 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 2801..3730 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251521 NP_459009.1 CDS thrC NC_003197.1 3734 5020 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 3734..5020 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251522 NP_459010.1 CDS STM0005 NC_003197.1 5114 5887 R hypothetical protein complement(5114..5887) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251523 NP_459011.1 CDS yaaJ NC_003197.1 5966 7396 R alanine/glycine transport protein complement(5966..7396) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251524 NP_459012.1 CDS talB NC_003197.1 7665 8618 D Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B 7665..8618 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251525 NP_459013.1 CDS mogA NC_003197.1 8729 9319 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdochetalase 8729..9319 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251526 NP_459014.1 CDS STM0009 NC_003197.1 9376 9942 R hypothetical protein complement(9376..9942) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251527 NP_459015.1 CDS STM0010 NC_003197.1 10092 10805 R hypothetical protein complement(10092..10805) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251528 NP_459016.1 CDS STM0011 NC_003197.1 10841 11245 R hypothetical protein complement(10841..11245) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251529 NP_459017.1 CDS dnaK NC_003197.1 11593 13509 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; chaperone protein DnaK 11593..13509 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251530 NP_459018.1 CDS dnaJ NC_003197.1 13595 14734 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 13595..14734 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251531 NP_459019.1 CDS STM0014 NC_003197.1 15014 15961 D LysR family transcriptional regulator 15014..15961 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251532 NP_459020.1 CDS STM0015 NC_003197.1 16088 16432 D bacteriophage protein 16088..16432 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251533 NP_459021.1 CDS STM0016 NC_003197.1 16493 17026 R hypothetical protein complement(16493..17026) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251534 NP_459022.1 CDS STM0017 NC_003197.1 17043 17486 R hypothetical protein complement(17043..17486) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251535 NP_459023.1 CDS STM0018 NC_003197.1 17867 19966 D exochitinase 17867..19966 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251536 NP_459024.1 CDS STM0019 NC_003197.1 20058 23054 D hydroxymethyltransferase 20058..23054 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251537 NP_459025.1 CDS STM0020 NC_003197.1 23335 24039 D cytoplasmic protein 23335..24039 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251538 NP_459026.1 CDS bcfA NC_003197.1 24469 25011 D fimbrial subunit 24469..25011 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251539 NP_459027.1 CDS bcfB NC_003197.1 25112 25798 D fimbrial chaperone 25112..25798 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251540 NP_459028.1 CDS bcfC NC_003197.1 25803 28424 D bovine colonization factor BcfC; fimbrial usher 25803..28424 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251541 NP_459029.1 CDS bcfD NC_003197.1 28425 29432 D fimbrial subunit 28425..29432 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251542 NP_459030.1 CDS bcfE NC_003197.1 29433 29978 D fimbrial subunit 29433..29978 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251543 NP_459031.1 CDS bcfF NC_003197.1 29994 30512 D fimbrial subunit 29994..30512 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251544 NP_459032.1 CDS bcfG NC_003197.1 30478 31209 D fimbrial chaperone 30478..31209 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251545 NP_459033.1 CDS bcfH NC_003197.1 31274 32119 D thiol-disulfide isomerase 31274..32119 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251546 NP_945153.1 CDS STM0028.1n NC_003197.1 32116 32445 D hypothetical protein 32116..32445 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673738 NP_459034.1 CDS STM0029 NC_003197.1 32545 32994 R transcriptional regulator complement(32545..32994) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251547 NP_459035.1 CDS STM0030 NC_003197.1 33364 34368 D LysR family transcriptional regulator 33364..34368 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251548 NP_459036.1 CDS STM0031 NC_003197.1 34376 34816 R transcriptional regulator complement(34376..34816) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251549 NP_459037.1 CDS STM0032 NC_003197.1 35339 37057 D arylsulfatase 35339..37057 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251550 NP_459038.1 CDS STM0033 NC_003197.1 37103 38674 R 5'-nucleotidase complement(37103..38674) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251551 NP_459039.1 CDS STM0034 NC_003197.1 38773 39534 R outer membrane/exported protein complement(38773..39534) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251552 NP_459040.1 CDS STM0035 NC_003197.1 40131 41624 D arylsulfatase 40131..41624 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251553 NP_459041.1 CDS STM0036 NC_003197.1 41723 42913 D arylsulfatase regulator 41723..42913 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251554 NP_459042.1 CDS STM0037 NC_003197.1 42932 44185 D cytoplasmic protein 42932..44185 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251555 NP_459043.1 CDS STM0038 NC_003197.1 44312 46027 D arylsulfatase 44312..46027 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251556 NP_459044.1 CDS nhaA NC_003197.1 46190 47356 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; Na(+)/H(+) antiporter NhaA 46190..47356 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251557 NP_459045.1 CDS nhaR NC_003197.1 47418 48317 D Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 47418..48317 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251558 NP_459046.1 CDS STM0041 NC_003197.1 48372 50411 R glycosyl hydrolase complement(48372..50411) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251559 NP_459047.1 CDS STM0042 NC_003197.1 50451 51824 R sodium galactoside symporter complement(50451..51824) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251560 NP_459048.1 CDS rpsT NC_003197.1 52280 52543 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(52280..52543) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251561 NP_459049.1 CDS yaaY NC_003197.1 52649 52864 D cytoplasmic protein 52649..52864 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251562 NP_459050.1 CDS ribF NC_003197.1 52872 53810 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 52872..53810 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251563 NP_459051.1 CDS ileS NC_003197.1 53855 56689 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucine--tRNA ligase 53855..56689 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251564 NP_459052.1 CDS lspA NC_003197.1 56689 57189 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 56689..57189 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251565 NP_459053.1 CDS slpA NC_003197.1 57344 57793 D peptidyl-prolyl cis-trans isomerase 57344..57793 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251566 NP_459054.1 CDS ispH NC_003197.1 57796 58746 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 57796..58746 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251567 NP_459055.1 CDS STM0050 NC_003197.1 58946 60148 D nitrite reductase 58946..60148 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251568 NP_459056.1 CDS rihC NC_003197.1 60164 61084 D catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 60164..61084 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251569 NP_459057.1 CDS STM0052 NC_003197.1 61106 61792 R transcriptional regulator complement(61106..61792) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251570 NP_459058.1 CDS STM0053 NC_003197.1 61794 63413 R sensory histidine kinase complement(61794..63413) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251571 NP_459059.1 CDS STM0054 NC_003197.1 63548 64849 R oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY); oxalacetate decarboxylase subunit beta complement(63548..64849) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251572 NP_459060.1 CDS STM0055 NC_003197.1 64862 66637 R catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase subunit alpha complement(64862..66637) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251573 NP_459061.1 CDS STM0056 NC_003197.1 66654 66893 R catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma complement(66654..66893) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251574 NP_459062.1 CDS STM0057 NC_003197.1 67052 68392 R citrate-sodium symporter complement(67052..68392) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251575 NP_459063.1 CDS citC2 NC_003197.1 68637 69680 D citrate lyase synthetase 68637..69680 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251576 NP_459064.1 CDS citD2 NC_003197.1 69710 70003 D acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 69710..70003 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251577 NP_459065.1 CDS citE2 NC_003197.1 70000 70869 D citrate lyase subunit beta 70000..70869 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251578 NP_459066.1 CDS citF2 NC_003197.1 70880 72400 D citrate-ACP transferase; citrate lyase subunit alpha 70880..72400 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251579 NP_459067.1 CDS STM0062 NC_003197.1 72400 72951 D cytoplasmic protein 72400..72951 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251580 NP_459068.1 CDS citG2 NC_003197.1 72929 73837 D modifier of citrate lyase protein; 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase 72929..73837 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251581 NP_459069.1 CDS dapB NC_003197.1 74017 74838 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; 4-hydroxy-tetrahydrodipicolinate reductase 74017..74838 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251582 YP_006892374.1 CDS STM04610 NC_003197.1 74964 75239 R hypothetical protein complement(74964..75239) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865703 NP_459071.1 CDS carA NC_003197.1 75880 77028 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 75880..77028 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251584 NP_459072.1 CDS carB NC_003197.1 77047 80274 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 77047..80274 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251585 NP_459073.1 CDS caiF NC_003197.1 80548 80943 D regulator of carnitine metabolism; induces the caiTABCDE and fixABCX operons; DNA-binding transcriptional activator CaiF 80548..80943 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251586 NP_459074.1 CDS caiE NC_003197.1 81020 81616 R involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE complement(81020..81616) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251587 NP_459075.1 CDS caiD NC_003197.1 81725 82510 R catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase complement(81725..82510) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251588 NP_459076.1 CDS caiC NC_003197.1 82564 84117 R crotonobetaine/carnitine-CoA ligase complement(82564..84117) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251589 NP_459077.1 CDS caiB NC_003197.1 84180 85397 R catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; crotonobetainyl-CoA:carnitine CoA-transferase complement(84180..85397) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251590 NP_459078.1 CDS caiA NC_003197.1 85509 86651 R catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase complement(85509..86651) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251591 NP_459079.1 CDS caiT NC_003197.1 86686 88203 R catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter complement(86686..88203) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251592 YP_006892375.1 CDS STM04615 NC_003197.1 88431 88616 D hypothetical protein 88431..88616 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865720 NP_459080.1 CDS fixA NC_003197.1 88684 89454 D required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; electron transfer flavoprotein FixA 88684..89454 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251593 NP_459081.1 CDS fixB NC_003197.1 89470 90411 D involved in electron transfer during carnitine metabolism; electron transfer flavoprotein FixB 89470..90411 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251594 NP_459082.1 CDS fixC NC_003197.1 90461 91747 D FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; oxidoreductase FixC 90461..91747 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251595 NP_459083.1 CDS fixX NC_003197.1 91744 92031 D ferredoxin-lik3 protein FixX 91744..92031 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251596 NP_459084.1 CDS yaaU NC_003197.1 92178 93518 D MFS family transporter 92178..93518 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251597 NP_459085.1 CDS STM0080 NC_003197.1 93607 93837 D outer membrane lipoprotein 93607..93837 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251598 NP_459086.1 CDS STM0081 NC_003197.1 94131 94547 D hypothetical protein 94131..94547 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251599 NP_459087.1 CDS STM0082 NC_003197.1 94771 95061 R hypothetical protein complement(94771..95061) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251600 NP_459089.1 CDS STM0084 NC_003197.1 95959 97848 D sulfatase 95959..97848 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251602 NP_459090.1 CDS yabF NC_003197.1 98255 98785 D Required for full activity of KefC, a potassium-proton antiporter; glutathione-regulated potassium-efflux system ancillary protein KefF 98255..98785 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251603 NP_459091.1 CDS kefC NC_003197.1 98778 100640 D transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC 98778..100640 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251604 NP_459092.1 CDS folA NC_003197.1 100839 101318 D catalyzes the reduction of dihydrofolate to tetrahydrofolate; dihydrofolate reductase 100839..101318 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251605 NP_459093.1 CDS apaH NC_003197.1 101424 102272 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; bis(5'-nucleosyl)-tetraphosphatase complement(101424..102272) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251606 NP_459094.1 CDS apaG NC_003197.1 102283 102660 R protein associated with Co2+ and Mg2+ efflux; protein ApaG complement(102283..102660) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251607 NP_459095.1 CDS ksgA NC_003197.1 102663 103484 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; rRNA small subunit methyltransferase A complement(102663..103484) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251608 NP_459096.1 CDS pdxA NC_003197.1 103481 104470 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(103481..104470) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251609 NP_459097.1 CDS surA NC_003197.1 104470 105756 R peptidyl-prolyl cis-trans isomerase involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB; chaperone SurA complement(104470..105756) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251610 NP_459098.1 CDS lpdT NC_003197.1 105810 108170 R organic solvent tolerance protein; determines N-hexane tolerance and is involved in outer membrane permeability; LPS-assembly protein LptD complement(105810..108170) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251611 NP_459099.1 CDS djlA NC_003197.1 108424 109236 D functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like protein 108424..109236 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251612 NP_459100.1 CDS rluA NC_003197.1 109331 109990 R catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; 23S rRNA/tRNA pseudouridine synthase A complement(109331..109990) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251613 NP_459101.1 CDS rapA NC_003197.1 110002 112908 R ATP-dependent helicase HepA; transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; RNA polymerase-associated protein RapA complement(110002..112908) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251614 NP_459102.1 CDS polB NC_003197.1 113082 115433 R Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II complement(113082..115433) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251615 NP_459103.1 CDS STM0098 NC_003197.1 115477 116097 R hypothetical protein complement(115477..116097) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251616 NP_459105.1 CDS STM0100 NC_003197.1 116816 117235 D cytoplasmic protein 116816..117235 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251618 NP_459106.1 CDS araD NC_003197.1 117241 117936 R catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase complement(117241..117936) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251619 NP_459107.1 CDS araA NC_003197.1 118077 119579 R catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase complement(118077..119579) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251620 NP_459108.1 CDS araB NC_003197.1 119590 121299 R catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase complement(119590..121299) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251621 NP_459109.1 CDS araC NC_003197.1 121640 122485 D positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; DNA-binding transcriptional regulator AraC 121640..122485 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251622 NP_459110.1 CDS yabI NC_003197.1 122604 123371 D DedA family; DedA family membrane protein 122604..123371 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251623 NP_459111.1 CDS thiQ NC_003197.1 123410 124117 R with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine ABC transporter ATP-binding protein complement(123410..124117) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251624 NP_459112.1 CDS thiP NC_003197.1 124101 125711 R permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine ABC transporter permease ThiP complement(124101..125711) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251625 NP_459113.1 CDS tbpA NC_003197.1 125687 126670 R part of the thiamine and TPP transport system tbpA-thiPQ; thiamine ABC transporter substrate-binding protein ThiP complement(125687..126670) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251626 NP_459114.1 CDS yabN NC_003197.1 126848 128506 R activates sgrS under glucose-phosphate stress conditions; HTH-type transcriptional regulator SgrR complement(126848..128506) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251627 NP_459115.1 CDS leuD NC_003197.1 129057 129662 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; 3-isopropylmalate dehydratase small subunit complement(129057..129662) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251628 NP_459116.1 CDS leuC NC_003197.1 129673 131073 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; 3-isopropylmalate dehydratase large subunit complement(129673..131073) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251629 NP_459117.1 CDS leuB NC_003197.1 131076 132167 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(131076..132167) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251630 NP_459118.1 CDS leuA NC_003197.1 132167 133738 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(132167..133738) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251631 NP_459119.1 CDS leuL NC_003197.1 133826 133912 R involved in attenuation control of the leuABCD operon in leucine biosynthesis; leu operon leader peptide complement(133826..133912) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251632 NP_459120.1 CDS leuO NC_003197.1 134569 135513 D activator for leuABCD operon; member of LysR family of transcriptional activators; HTH-type transcriptional regulator LeuO 134569..135513 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251633 NP_459121.1 CDS ilvI NC_003197.1 135898 137559 D catalytic subunit; catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; acetolactate synthase 3 large subunit 135898..137559 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251634 NP_459122.1 CDS ilvH NC_003197.1 137562 138053 D regulatory subunit; with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; acetolactate synthase 3 small subunit 137562..138053 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251635 NP_459123.1 CDS fruR NC_003197.1 138337 139341 D binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 138337..139341 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251636 YP_006892376.1 CDS STM04630 NC_003197.1 139338 139487 R hypothetical protein complement(139338..139487) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865718 NP_459124.1 CDS yabB NC_003197.1 139947 140405 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 139947..140405 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251637 NP_459125.1 CDS mraW NC_003197.1 140407 141348 D rRNA small subunit methyltransferase H 140407..141348 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251638 NP_459126.1 CDS ftsL NC_003197.1 141345 141710 D membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL 141345..141710 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251639 NP_459127.1 CDS ftsI NC_003197.1 141726 143492 D penicillin-binding protein 3; peptidoglycan synthase FtsI 141726..143492 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251640 NP_459128.1 CDS murE NC_003197.1 143479 144966 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 143479..144966 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251641 NP_459129.1 CDS murF NC_003197.1 144963 146321 D UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 144963..146321 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251642 NP_459130.1 CDS mraY NC_003197.1 146315 147397 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 146315..147397 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251643 NP_459131.1 CDS murD NC_003197.1 147400 148716 D UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoylalanine--D-glutamate ligase 147400..148716 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251644 NP_459132.1 CDS ftsW NC_003197.1 148716 149960 D cell division protein FtsW; integral membrane protein involved in stabilizing FstZ ring during cell division; lipid II flippase FtsW 148716..149960 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251645 NP_459133.1 CDS murG NC_003197.1 149957 151024 D undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 149957..151024 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251646 NP_459134.1 CDS murC NC_003197.1 151143 152618 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 151143..152618 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251647 NP_459135.1 CDS ddl NC_003197.1 152611 153531 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 152611..153531 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251648 NP_459136.1 CDS ftsQ NC_003197.1 153533 154363 D involved in septum formation; cell division protein FtsQ 153533..154363 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251649 NP_459137.1 CDS ftsA NC_003197.1 154360 155622 D ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 154360..155622 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251650 NP_459138.1 CDS ftsZ NC_003197.1 155683 156834 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 155683..156834 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251651 NP_459139.1 CDS lpxC NC_003197.1 156935 157852 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 156935..157852 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251652 NP_459140.2 CDS yacA NC_003197.1 158130 158627 D secM translational pause allows for the initiation of secA translation; SecA regulator SecM 158130..158627 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251653 NP_459141.1 CDS secA NC_003197.1 158689 161394 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 158689..161394 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251654 NP_459142.1 CDS mutT NC_003197.1 161546 161941 D prefers dGTP; causes AT-GC transversions; 7,8-dihydro-8-oxoguanine-triphosphatase 161546..161941 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251655 NP_459143.1 CDS yacG NC_003197.1 162263 162454 R DNA gyrase inhibitor complement(162263..162454) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251656 NP_459144.1 CDS zapD NC_003197.1 162464 163207 R cell division protein ZapD complement(162464..163207) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251657 NP_459145.1 CDS coaE NC_003197.1 163207 163827 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(163207..163827) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251658 NP_459146.1 CDS guaC NC_003197.1 164053 165096 D guanosine 5'-monophosphate oxidoreductase; catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; GMP reductase 164053..165096 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251659 NP_459147.1 CDS hofC NC_003197.1 165127 166329 R involved in biogenesis of fimbriae, protein transport, DNA uptake; type IV pilin biogenesis protein complement(165127..166329) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251660 NP_459148.1 CDS hofB NC_003197.1 166319 167704 R integral membrane protein complement(166319..167704) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251661 NP_459149.1 CDS ppdD NC_003197.1 167714 168151 R major pilin subunit complement(167714..168151) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251662 NP_459150.1 CDS nadC NC_003197.1 168373 169266 R quinolinate phosphoribosyltransferase; catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase complement(168373..169266) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251663 NP_459151.1 CDS ampD NC_003197.1 169354 169917 D 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 169354..169917 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251664 NP_459152.1 CDS ampE NC_003197.1 169914 170768 D involved in regulation of beta-lactamase; signaling protein; regulatory protein AmpE 169914..170768 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251665 NP_459153.1 CDS STM0148 NC_003197.1 170860 171810 R hypothetical protein complement(170860..171810) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251666 NP_459154.1 CDS STM0149 NC_003197.1 171810 173216 R Na+/galactoside symporter complement(171810..173216) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251667 NP_459155.1 CDS aroP NC_003197.1 173380 174753 R aromatic amino acid transport protein AroP complement(173380..174753) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251668 NP_459156.1 CDS pdhR NC_003197.1 175316 176080 D activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; pyruvate dehydrogenase complex repressor 175316..176080 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251669 NP_459157.1 CDS aceE NC_003197.1 176240 178903 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase decarboxylase subunit E1 176240..178903 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251670 NP_459158.1 CDS aceF NC_003197.1 178918 180807 D E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; pyruvate dehydrogenase dihydrolipoyltransacetylase subunit E2 178918..180807 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251671 NP_459159.1 CDS lpdA NC_003197.1 181007 182431 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; pyruvate dehydrogenase lipoamide dehydrogenase subunit E3 181007..182431 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251672 NP_459160.1 CDS STM0155 NC_003197.1 182720 183004 D outer membrane protein 182720..183004 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251673 NP_459161.1 CDS STM0156 NC_003197.1 183042 183833 R periplasmic protein complement(183042..183833) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251674 NP_459162.1 CDS yacH NC_003197.1 183846 185468 R outer membrane protein complement(183846..185468) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251675 NP_459163.1 CDS acnB NC_003197.1 185857 188454 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 185857..188454 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251676 NP_459164.1 CDS STM0159 NC_003197.1 188515 189357 R restriction endonuclease complement(188515..189357) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251677 NP_459165.1 CDS STM0160 NC_003197.1 189603 189965 D hypothetical protein 189603..189965 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251678 NP_459166.1 CDS kdgT NC_003197.1 190200 191153 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 190200..191153 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251679 NP_459167.1 CDS STM0162 NC_003197.1 191150 192421 D inner membrane protein 191150..192421 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251680 NP_459168.1 CDS pdxA NC_003197.1 192411 193394 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 192411..193394 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251681 NP_459169.1 CDS STM0164 NC_003197.1 193404 194171 D LysR family transcriptional regulator 193404..194171 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251682 NP_459170.1 CDS speD NC_003197.1 194201 194995 R S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase complement(194201..194995) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251683 NP_459171.1 CDS speE NC_003197.1 195016 195876 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(195016..195876) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251684 NP_459172.1 CDS yacC NC_003197.1 195983 196330 R periplasmic protein complement(195983..196330) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251685 NP_459173.1 CDS cueO NC_003197.1 196532 198142 D laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; blue copper oxidase CueO 196532..198142 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251686 NP_459174.1 CDS gcd NC_003197.1 198220 200610 R glucose dehydrogenase complement(198220..200610) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251687 NP_459175.1 CDS hpt NC_003197.1 200816 201352 D Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine phosphoribosyltransferase 200816..201352 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251688 NP_459176.1 CDS yadF NC_003197.1 201410 202072 R catalyzes the interconversion of bicarbonate and carbon dioxide; carbonic anhydrase complement(201410..202072) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251689 NP_459177.1 CDS yadG NC_003197.1 202181 203107 D multidrug ABC transporter ATPase 202181..203107 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251690 NP_459178.1 CDS yadH NC_003197.1 203104 203874 D ABC superfamily membrane protein; transporter 203104..203874 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251691 NP_459179.1 CDS stiH NC_003197.1 203991 205070 R fimbrial protein complement(203991..205070) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251692 NP_459180.1 CDS stiC NC_003197.1 205079 207625 R fimbrial usher complement(205079..207625) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251693 NP_459181.1 CDS stiB NC_003197.1 207652 208335 R fimbrial chaperone complement(207652..208335) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251694 NP_459182.1 CDS stiA NC_003197.1 208383 208922 R fimbrial subunit complement(208383..208922) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251695 NP_459183.1 CDS yadI NC_003197.1 209293 209733 D PTS system transporter subunit IIA 209293..209733 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251696 NP_459184.1 CDS yadE NC_003197.1 209795 211024 D xylanase/chitin deacetylase 209795..211024 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251697 NP_459185.1 CDS panD NC_003197.1 211031 211411 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate 1-decarboxylase complement(211031..211411) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251698 NP_459186.1 CDS panC NC_003197.1 211506 212360 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate synthetase complement(211506..212360) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251699 NP_459187.1 CDS panB NC_003197.1 212486 213277 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(212486..213277) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251700 NP_459188.1 CDS folK NC_003197.1 213398 213877 R catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP; 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase complement(213398..213877) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251701 NP_459189.1 CDS pcnB NC_003197.1 213874 215292 R Polymerase that creates the 3' poly(A) tail found in some mRNA's; poly(A) polymerase I complement(213874..215292) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251702 NP_459190.2 CDS yadB NC_003197.1 215433 216329 R this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase complement(215433..216329) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251703 NP_459191.1 CDS dksA NC_003197.1 216398 216853 R dnaK suppressor protein (SW:DKSA_SALTY); suppresses dnaK deletion; RNA polymerase-binding transcription factor complement(216398..216853) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251704 NP_459192.1 CDS sfsA NC_003197.1 217030 217734 R Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A complement(217030..217734) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251705 NP_459193.1 CDS ligT NC_003197.1 217751 218281 R 2'-5' RNA ligase complement(217751..218281) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251706 NP_459194.1 CDS hrpB NC_003197.1 218309 220783 D ATP-dependent helicase 218309..220783 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251707 NP_459195.1 CDS mrcB NC_003197.1 220923 223445 D penicillin-binding protein 1b; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell; transpeptidase/transglycosylase 220923..223445 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251708 NP_459196.1 CDS fhuA NC_003197.1 223738 225927 D involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; ferrichrome outer membranereceptor/ transporter 223738..225927 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251709 NP_459197.1 CDS fhuC NC_003197.1 225976 226773 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; iron(3+)-hydroxamate ABC transporter ATP-binding protein FhuC 225976..226773 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251710 NP_459198.1 CDS fhuD NC_003197.1 226773 227663 D Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; iron(3+)-hydroxamate ABC transporter substrate-binding protein FhuD 226773..227663 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251711 NP_459199.1 CDS fhuB NC_003197.1 227660 229717 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron(3+)-hydroxamate ABC transporter permease FhuB 227660..229717 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251712 NP_459200.1 CDS stfA NC_003197.1 230657 231217 D major fimbrial subunit StfA; fimbrial subunit 230657..231217 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251713 NP_459201.1 CDS stfC NC_003197.1 231303 233960 D outer membrane usher protein StfC; fimbrial outer membrane usher 231303..233960 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251714 NP_459202.1 CDS stfD NC_003197.1 233978 234730 D periplasmic fimbrial chaperone StfD; periplasmic fimbrial chaperone 233978..234730 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251715 NP_459203.1 CDS stfE NC_003197.1 234749 235261 D minor fimbrial subunit StfE; minor fimbrial subunit 234749..235261 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251716 NP_459204.1 CDS stfF NC_003197.1 235258 235734 D minor fimbrial subunit StfF; minor fimbrial subunit 235258..235734 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251717 NP_459205.1 CDS stfG NC_003197.1 235734 236264 D minor fimbrial subunit StfG; adhesin; minor fimbrial subunit 235734..236264 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251718 NP_459206.1 CDS STM0201 NC_003197.1 236264 237103 D outer membrane protein 236264..237103 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251719 NP_459207.1 CDS hemL NC_003197.1 237211 238491 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde 2,1-aminomutase complement(237211..238491) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251720 NP_459208.1 CDS clcA NC_003197.1 238661 240082 D Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; H(+)/Cl(-) exchange transporter ClcA 238661..240082 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251721 NP_459209.2 CDS yadR NC_003197.1 240164 240508 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 240164..240508 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251722 NP_459210.1 CDS yadS NC_003197.1 240609 241232 R inner membrane protein complement(240609..241232) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251723 NP_459211.1 CDS btuF NC_003197.1 241269 242069 R solute binding component of the vitamin B12 transport system BtuCDF; vitamin B12 transporter substrate-binding protein BtuF complement(241269..242069) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251724 NP_459212.1 CDS pfs NC_003197.1 242062 242760 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(242062..242760) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251725 NP_459213.1 CDS dgt NC_003197.1 242845 244362 D forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 242845..244362 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251726 NP_459214.1 CDS htrA NC_003197.1 244492 245919 D protease Do; required at high temperature; degrades damaged proteins; serine endoprotease 244492..245919 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251727 NP_459215.1 CDS cdaR NC_003197.1 246072 247229 D regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization; carbohydrate diacid transcriptional activator CdaR 246072..247229 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251728 NP_459216.1 CDS STM0211 NC_003197.1 247318 247704 R hypothetical protein complement(247318..247704) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251729 NP_459217.1 CDS STM0212 NC_003197.1 247951 249252 D inner membrane protein 247951..249252 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251730 NP_459218.1 CDS dapD NC_003197.1 249289 250113 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase complement(249289..250113) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251731 NP_459219.1 CDS glnD NC_003197.1 250143 252815 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; bifunctional uridylyltransferase/uridylyl-removing protein complement(250143..252815) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251732 NP_459220.1 CDS map NC_003197.1 253052 253846 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(253052..253846) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251733 NP_459221.1 CDS rpsB NC_003197.1 254297 255022 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 254297..255022 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251734 NP_459222.1 CDS tsf NC_003197.1 255280 256131 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 255280..256131 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251735 NP_459223.1 CDS pyrH NC_003197.1 256276 257001 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 256276..257001 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251736 NP_459224.1 CDS frr NC_003197.1 257148 257705 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 257148..257705 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251737 NP_459225.1 CDS dxr NC_003197.1 257846 259042 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 257846..259042 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251738 NP_459226.1 CDS uppS NC_003197.1 259355 260113 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; Ditrans,polycis-undecaprenyl-diphosphate synthase 259355..260113 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251739 NP_459227.1 CDS cdsA NC_003197.1 260126 260983 D catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; phosphatidate cytidylyltransferase 260126..260983 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251740 NP_459228.1 CDS yaeL NC_003197.1 260995 262347 D catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; zinc metallopeptidase RseP 260995..262347 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251741 NP_459229.1 CDS bamA NC_003197.1 262379 264793 D part of a complex with BamABCDE; involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor BamA 262379..264793 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251742 NP_459230.1 CDS STM0225 NC_003197.1 264916 265401 D outer membrane protein OmpH; chaperone protein Skp 264916..265401 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251743 NP_459231.1 CDS lpxD NC_003197.1 265405 266430 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 265405..266430 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251744 NP_459232.1 CDS fabZ NC_003197.1 266536 266991 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 266536..266991 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251745 NP_459233.1 CDS lpxA NC_003197.1 266995 267783 D UDP-N-acetylglucosamine acyltransferase; catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; acyl-[ACP]--UDP-N-acetylglucosamine O-acyltransferase 266995..267783 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251746 NP_459234.1 CDS lpxB NC_003197.1 267783 268931 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 267783..268931 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251747 NP_459235.1 CDS rnhB NC_003197.1 268928 269524 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 268928..269524 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251748 NP_459236.1 CDS dnaE NC_003197.1 269548 273030 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 269548..273030 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251749 NP_459237.1 CDS accA NC_003197.1 273043 274002 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 273043..274002 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251750 NP_459238.1 CDS STM0233 NC_003197.1 274183 275946 D endochitinase 274183..275946 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251751 NP_459239.1 CDS ldcC NC_003197.1 276022 278163 D lysine decarboxylase 2 276022..278163 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251752 NP_459240.1 CDS yaeR NC_003197.1 278219 278608 D lyase 278219..278608 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251753 NP_459241.1 CDS tilS NC_003197.1 278671 279963 D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; tRNA(Ile)-lysidine synthetase 278671..279963 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251754 NP_459242.1 CDS rof NC_003197.1 280047 280307 R Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination; Rho-binding antiterminator complement(280047..280307) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251755 NP_459243.1 CDS STM0238 NC_003197.1 280294 280512 R hypothetical protein complement(280294..280512) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251756 NP_459244.1 CDS STM0239 NC_003197.1 280692 281237 D hypothetical 20.8 kDa protein in mesJ-cutF intergenic region (SW:YAEQ_SALTY); hypothetical protein 280692..281237 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251757 NP_459245.1 CDS yaeJ NC_003197.1 281234 281656 D putative-tRNA hydrolase domain; hydrolase domain-containing protein 281234..281656 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251758 NP_459246.1 CDS proS NC_003197.1 282467 284185 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); proline--tRNA ligase complement(282467..284185) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251760 NP_459247.1 CDS yaeB NC_003197.1 284296 285003 R regulator complement(284296..285003) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251761 NP_459248.1 CDS rcsF NC_003197.1 285000 285404 R colanic acid synthesis regulator complement(285000..285404) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251762 NP_459249.1 CDS metQ NC_003197.1 285523 286338 R DL-methionine ABC transporter substrate-binding protein MetQ complement(285523..286338) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251763 NP_459250.1 CDS metI NC_003197.1 286377 287030 R part of the MetNIQ methionine uptake system; DL-methionine ABC transporter permease MetI complement(286377..287030) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251764 NP_459251.1 CDS metN NC_003197.1 287023 288054 R part of the metNIQ transport system for methionine; DL-methionine ABC transporter ATP-binding protein MetN complement(287023..288054) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251765 NP_459252.1 CDS yaeD NC_003197.1 288244 288810 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase 288244..288810 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251766 NP_459253.1 CDS dkgB NC_003197.1 295069 295872 D catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B 295069..295872 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251773 NP_459254.1 CDS yafC NC_003197.1 295893 296807 R LysR family transcriptional regulator complement(295893..296807) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251774 NP_459255.1 CDS STM0257 NC_003197.1 296912 298087 D drug efflux protein 296912..298087 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251775 NP_459256.1 CDS STM0258 NC_003197.1 298240 299019 D hypothetical protein 298240..299019 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251776 NP_459257.1 CDS yafE NC_003197.1 299097 299867 D methyltransferase 299097..299867 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251777 NP_459258.1 CDS mltD NC_003197.1 299923 301290 R catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall; membrane-bound lytic murein transglycosylase D complement(299923..301290) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251778 NP_459259.1 CDS gloB NC_003197.1 301362 302117 R catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; hydroxyacylglutathione hydrolase complement(301362..302117) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251779 NP_459260.1 CDS yafS NC_003197.1 302152 302874 D SAM-dependent methyltransferase 302152..302874 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251780 NP_459261.1 CDS rnhA NC_003197.1 302871 303338 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(302871..303338) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251781 NP_459262.1 CDS dnaQ NC_003197.1 303402 304133 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 303402..304133 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251782 NP_459263.1 CDS STM0266 NC_003197.1 304665 305720 R cytoplasmic protein complement(304665..305720) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251784 NP_459264.1 CDS STM0267 NC_003197.1 305731 306726 R cytoplasmic protein complement(305731..306726) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251785 NP_459265.1 CDS STM0268 NC_003197.1 306723 308606 R cytoplasmic protein complement(306723..308606) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251786 NP_459266.1 CDS STM0269 NC_003197.1 308622 309116 R cytoplasmic protein complement(308622..309116) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251787 NP_459267.1 CDS STM0270 NC_003197.1 309113 309937 R cytoplasmic protein complement(309113..309937) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251788 NP_459268.1 CDS STM0271 NC_003197.1 309924 310826 R cytoplasmic protein complement(309924..310826) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251789 NP_459269.1 CDS STM0272 NC_003197.1 311194 313833 D chaperone ATPase 311194..313833 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251790 NP_459270.1 CDS STM0273 NC_003197.1 313933 314475 D cytoplasmic protein 313933..314475 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251791 NP_459271.1 CDS STM0274 NC_003197.1 314499 316007 D cytoplasmic protein 314499..316007 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251792 NP_459272.1 CDS STM0274A NC_003197.1 316070 316180 D invasol SirA 316070..316180 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251793 NP_459273.2 CDS STM0275.s NC_003197.1 316193 316639 D hypothetical protein 316193..316639 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251794 NP_459274.1 CDS STM0276 NC_003197.1 316893 317378 D cytoplasmic protein 316893..317378 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251795 NP_459275.1 CDS STM0277 NC_003197.1 317683 318168 D cytoplasmic protein 317683..318168 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251796 NP_459276.1 CDS STM0278 NC_003197.1 318153 318536 D periplasmic protein 318153..318536 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251797 NP_459277.1 CDS STM0279 NC_003197.1 318679 319164 D cytoplasmic protein 318679..319164 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251798 NP_459278.1 CDS STM0280 NC_003197.1 319231 319767 D cytoplasmic protein 319231..319767 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251799 NP_459279.1 CDS STM0281 NC_003197.1 319771 321114 D cytoplasmic protein 319771..321114 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251800 NP_459280.1 CDS STM0282 NC_003197.1 321111 322415 D OmpA family outer membrane protein 321111..322415 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251801 NP_459281.1 CDS STM0283 NC_003197.1 322420 323193 D inner membrane protein 322420..323193 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251802 NP_459282.1 CDS STM0284 NC_003197.1 323396 323827 D shiga-like toxin A subunit 323396..323827 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251803 NP_459283.1 CDS STM0285 NC_003197.1 323861 327730 D inner membrane protein 323861..327730 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251804 NP_459284.1 CDS STM0286 NC_003197.1 327730 328518 D cytoplasmic protein 327730..328518 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251805 NP_459285.1 CDS STM0287 NC_003197.1 328515 328931 D cytoplasmic protein 328515..328931 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251806 NP_459286.1 CDS STM0288 NC_003197.1 328955 329476 D cytoplasmic protein 328955..329476 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251807 NP_459287.1 CDS STM0289 NC_003197.1 329873 332062 D cytoplasmic protein 329873..332062 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251808 NP_459288.1 CDS STM0290 NC_003197.1 332086 332532 D cytoplasmic protein 332086..332532 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251809 NP_459289.1 CDS STM0291 NC_003197.1 332551 336645 D RHS family protein 332551..336645 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251810 NP_459290.1 CDS STM0292 NC_003197.1 337095 337835 D RHS family protein 337095..337835 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251811 NP_459291.1 CDS STM0293 NC_003197.1 337829 338275 D cytoplasmic protein 337829..338275 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251812 NP_459292.1 CDS STM0294 NC_003197.1 338838 339275 D cytoplasmic protein 338838..339275 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251813 NP_945154.1 CDS STM0294.1N NC_003197.1 339328 339603 R cytoplasmic protein complement(339328..339603) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673758 YP_006892377.1 CDS STM04655 NC_003197.1 339629 339871 R cytoplasmic protein complement(339629..339871) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865716 NP_459293.1 CDS STM0295 NC_003197.1 340044 340352 D cytoplasmic protein 340044..340352 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251814 NP_459297.1 CDS safA NC_003197.1 342209 342721 D major pilus subunit SafA 342209..342721 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251818 NP_459298.1 CDS safB NC_003197.1 342829 343542 D fimbrial assembly chaperone 342829..343542 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251819 NP_459299.1 CDS safC NC_003197.1 343566 346076 D fimbrial usher 343566..346076 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251820 NP_459300.1 CDS safD NC_003197.1 346098 346568 D fimbrial subunit 346098..346568 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251821 NP_459301.1 CDS ybeJ NC_003197.1 346974 347795 D xylanase/chitin deacetylase 346974..347795 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251822 YP_006892378.1 CDS STM04665 NC_003197.1 347875 348135 D hypothetical protein 347875..348135 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865730 NP_459302.1 CDS sinR NC_003197.1 348610 349557 D SinR protein (SW:SINR_SALTY); HTH-type transcriptional regulator SinR 348610..349557 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251823 NP_459303.1 CDS STM0305 NC_003197.1 349674 349889 D cytoplasmic protein 349674..349889 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251824 NP_459304.1 CDS STM0306 NC_003197.1 349893 350612 R adhesin/invasin protein PagN complement(349893..350612) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251825 NP_459305.1 CDS STM0307 NC_003197.1 350943 351350 R VirG-like protein complement(350943..351350) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251826 NP_459306.1 CDS yafV NC_003197.1 351721 352488 R amidohydrolase complement(351721..352488) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251827 NP_459307.1 CDS fadE NC_003197.1 352597 355041 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(352597..355041) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251828 NP_459308.1 CDS gmhA NC_003197.1 355281 355859 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 355281..355859 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251829 NP_459309.1 CDS yafJ NC_003197.1 356072 356839 D glutamine amidotransferase 356072..356839 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251830 NP_459310.1 CDS yafK NC_003197.1 356810 357550 R periplasmic protein complement(356810..357550) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251831 NP_459311.1 CDS dinP NC_003197.1 357800 358855 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 357800..358855 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251832 YP_006892379.1 CDS STM04675 NC_003197.1 359074 360048 D hypothetical protein 359074..360048 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865708 NP_459312.1 CDS prfH NC_003197.1 360203 360817 D peptide chain release factor 360203..360817 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251834 NP_459313.1 CDS pepD NC_003197.1 360973 362430 R aminoacyl-histidine dipeptidase complement(360973..362430) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251835 NP_459314.1 CDS gpt NC_003197.1 362679 363137 D catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine phosphoribosyltransferase 362679..363137 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251836 NP_459315.1 CDS frsA NC_003197.1 363226 364470 D fermentation/respiration switch protein; forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; esterase FrsA 363226..364470 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251837 NP_459316.1 CDS crl NC_003197.1 364528 364929 D involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; sigma factor-binding protein Crl 364528..364929 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251838 NP_459317.1 CDS phoE NC_003197.1 364980 366032 R outer membrane phosphoporin protein E complement(364980..366032) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251839 NP_459318.1 CDS proB NC_003197.1 366315 367418 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; glutamate 5-kinase 366315..367418 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251840 NP_459319.1 CDS proA NC_003197.1 367430 368680 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 367430..368680 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251841 NP_459321.1 CDS STM0325 NC_003197.1 369197 369997 R IS3 transposase complement(369197..369997) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251844 NP_459322.1 CDS STM0327 NC_003197.1 370739 371062 D cytoplasmic protein 370739..371062 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251846 NP_459323.2 CDS STM0328.s NC_003197.1 371304 372641 D permease 371304..372641 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251847 NP_459324.1 CDS STM0329 NC_003197.1 372773 374194 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; 3-isopropylmalate dehydratase large subunit 372773..374194 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251848 NP_459325.1 CDS STM0330 NC_003197.1 374196 374822 D 3-isopropylmalate isomerase small subunit 374196..374822 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251849 NP_459326.1 CDS STM0331 NC_003197.1 374837 375715 D fumarylacetoacetate hydrolase 374837..375715 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251850 NP_459327.1 CDS STM0332 NC_003197.1 375715 376629 D hydrolase/acyltransferase 375715..376629 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251851 NP_459328.1 CDS STM0333 NC_003197.1 376663 377628 D LysR family transcriptional regulator 376663..377628 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251852 NP_459329.1 CDS STM0334 NC_003197.1 377573 377845 R cytoplasmic protein complement(377573..377845) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251853 NP_459330.1 CDS STM0335 NC_003197.1 378536 378934 D outer membrane protein 378536..378934 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251854 NP_459331.1 CDS stbE NC_003197.1 378981 379739 R fimbrial chaperone complement(378981..379739) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251855 NP_459332.1 CDS stbD NC_003197.1 379705 381030 R fimbrial usher complement(379705..381030) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251856 NP_459333.1 CDS stbC NC_003197.1 381035 383596 R export and assembly of type 1 fimbriae; fimbrial usher complement(381035..383596) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251857 NP_459334.1 CDS stbB NC_003197.1 383580 384341 R fimbrial chaperone complement(383580..384341) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251858 NP_459335.1 CDS stbA NC_003197.1 384403 384939 R fimbrial major subunit complement(384403..384939) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251859 NP_459336.1 CDS STM0341 NC_003197.1 385573 386337 D inner membrane protein 385573..386337 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251860 NP_459337.1 CDS STM0342 NC_003197.1 386310 386609 D periplasmic protein 386310..386609 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251861 NP_459338.1 CDS STM0343 NC_003197.1 387109 388683 D diguanylate cyclase/phosphodiesterase domain 1; diguanylate cyclase/phosphodiesterase domain-containing protein 387109..388683 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251862 NP_459339.1 CDS STM0344 NC_003197.1 388783 389526 D response regulator 388783..389526 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251863 NP_459340.1 CDS STM0345 NC_003197.1 389499 389987 D inner membrane protein 389499..389987 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251864 NP_459341.1 CDS STM0346 NC_003197.1 390388 390912 D outer membrane protein 390388..390912 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251865 NP_459342.1 CDS STM0347 NC_003197.1 391056 391697 D response regulator 391056..391697 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251866 NP_459343.1 CDS STM0348 NC_003197.1 391708 391932 D inner membrane protein 391708..391932 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251867 NP_459344.1 CDS STM0349 NC_003197.1 391990 392349 D outer membrane lipoprotein 391990..392349 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251868 NP_459345.2 CDS STM0350.S NC_003197.1 392419 393876 R outer membrane efflux-like protein complement(392419..393876) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251869 NP_459346.1 CDS STM0351 NC_003197.1 393893 397060 R cation efflux system protein complement(393893..397060) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251870 NP_459347.2 CDS STM0352.S NC_003197.1 397057 398262 R cation efflux system protein complement(397057..398262) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251871 NP_459348.1 CDS STM0353 NC_003197.1 398560 400848 D cation transport ATPase 398560..400848 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251872 NP_459349.1 CDS STM0354 NC_003197.1 400860 401324 D transcriptional regulator 400860..401324 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251873 NP_459350.1 CDS STM0355 NC_003197.1 401402 401596 D copper chaperone 401402..401596 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251874 NP_459351.1 CDS STM0356 NC_003197.1 401889 403142 D inner membrane protein 401889..403142 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251875 NP_459352.1 CDS mod NC_003197.1 403331 405289 D type III restriction-modification system; methyltransferase (SW:T3MO_SALTY); restriction system; type III restriction-modification system methyltransferase 403331..405289 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251876 NP_459353.2 CDS res NC_003197.1 405296 408271 D type III restriction-modification system enzyme (SW:T3RE_SALTY); DNA helicase; type III restriction-modification system DNA helicase 405296..408271 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251877 NP_459354.1 CDS STM0359 NC_003197.1 408548 408649 D cytoplasmic protein 408548..408649 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251878 NP_459355.1 CDS STM0360 NC_003197.1 408766 410169 D cytochrome BD2 subunit I 408766..410169 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251879 NP_459356.1 CDS STM0361 NC_003197.1 410166 411176 D cytochrome BD2 subunit II 410166..411176 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251880 NP_459357.1 CDS STM0362 NC_003197.1 411193 411417 D cytoplasmic protein 411193..411417 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251881 NP_459358.1 CDS STM0363 NC_003197.1 411513 412517 D XylS/AraC transcriptional activator; AraC family; AraC family transcriptional regulator 411513..412517 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251882 NP_459359.1 CDS foxA NC_003197.1 412663 414771 D ferrioxamine B receptor 412663..414771 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251883 NP_459360.1 CDS yahN NC_003197.1 414812 415444 R transporter complement(414812..415444) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251884 NP_459361.1 CDS yahO NC_003197.1 415676 415951 D periplasmic protein 415676..415951 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251885 NP_459362.1 CDS prpR NC_003197.1 416087 417712 R propionate catabolism operon regulatory protein (SW:PRPR_SALTY); EBP family; propionate catabolism operon regulatory protein complement(416087..417712) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251886 NP_459363.1 CDS prpB NC_003197.1 417977 418864 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 417977..418864 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251887 NP_459364.1 CDS prpC NC_003197.1 418987 420156 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; 2-methylcitrate synthase 418987..420156 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251888 NP_459365.1 CDS prpD NC_003197.1 420196 421647 D functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 420196..421647 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251889 NP_459366.1 CDS prpE NC_003197.1 421688 423574 D catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionate--CoA ligase 421688..423574 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251890 NP_459367.1 CDS hemB NC_003197.1 423678 424652 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(423678..424652) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251891 NP_459368.1 CDS STM0373 NC_003197.1 425165 428101 D hypothetical protein 425165..428101 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251892 NP_459369.1 CDS yaiV NC_003197.1 428187 428810 D DNA-binding transcriptional regulator 428187..428810 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251893 NP_459370.2 CDS ampH NC_003197.1 428855 430012 R penicillin-binding protein complement(428855..430012) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251894 NP_459371.1 CDS sbmA NC_003197.1 430359 431579 D in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; ABC superfamily transporter 430359..431579 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251895 NP_459372.1 CDS yaiW NC_003197.1 431594 432688 D outer membrane lipoprotein 431594..432688 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251896 NP_459373.1 CDS yaiY NC_003197.1 432726 433034 R inner membrane protein complement(432726..433034) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251897 NP_459374.1 CDS yaiZ NC_003197.1 433302 433517 D inner membrane protein 433302..433517 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251898 NP_459375.1 CDS ddl NC_003197.1 433543 434637 R D-alanyl-alanine synthetase A; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase A complement(433543..434637) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251899 NP_459376.1 CDS STM0381 NC_003197.1 434715 435428 D inner membrane protein 434715..435428 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251900 NP_459377.1 CDS STM0382 NC_003197.1 435597 436808 D permease 435597..436808 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251901 NP_459378.2 CDS STM0383 NC_003197.1 437105 437365 D aids the stabilization of the sigma factor RpoS; anti-adapter protein IraP 437105..437365 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251902 NP_459379.1 CDS psiF NC_003197.1 437717 438037 D phosphate starvation inducible protein 437717..438037 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251903 NP_459380.1 CDS adrA NC_003197.1 438129 439241 D catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis; diguanylate cyclase AdrA 438129..439241 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251904 NP_459381.1 CDS proC NC_003197.1 439256 440065 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(439256..440065) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251905 NP_459382.1 CDS STM0387 NC_003197.1 440205 440660 D hypothetical protein 440205..440660 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251906 NP_459383.1 CDS aroL NC_003197.1 440845 441390 D shikimate kinase 440845..441390 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251907 NP_459384.1 CDS yaiA NC_003197.1 441417 441608 D cytoplasmic protein 441417..441608 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251908 NP_459385.1 CDS aroM NC_003197.1 441859 442536 D aro operon protein 441859..442536 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251909 NP_459386.1 CDS STM0391 NC_003197.1 442607 442891 D hypothetical protein 442607..442891 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251910 NP_459387.1 CDS rdgC NC_003197.1 442929 443840 R Required for efficient pilin antigenic variation; recombination associated protein complement(442929..443840) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251911 NP_459388.1 CDS yajF NC_003197.1 443966 444874 D catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 443966..444874 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251912 NP_459389.1 CDS araJ NC_003197.1 444896 446068 R member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; MFS family arabinose polymer transporter complement(444896..446068) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251913 NP_459390.1 CDS sbcC NC_003197.1 446241 449381 R with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; ATP-dependent dsDNA exonuclease complement(446241..449381) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251914 NP_459391.1 CDS sbcD NC_003197.1 449378 450580 R with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; ATP-dependent dsDNA exonuclease complement(449378..450580) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251915 NP_459392.1 CDS phoB NC_003197.1 450795 451484 D two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; response regulato PhoB 450795..451484 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251916 NP_459393.1 CDS phoR NC_003197.1 451554 452849 D membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; sensory kinase PhoR 451554..452849 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251917 NP_459394.1 CDS brnQ NC_003197.1 453258 454577 D branched-chain amino acid transport system II carrier protein (SW:BRNQ_SALTY); LIVCS family; LIV-II; branched-chain amino acid transport system 2 carrier protein 453258..454577 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251918 NP_459395.1 CDS proY NC_003197.1 454652 456022 D cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; proline-specific permease 454652..456022 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251919 NP_459396.1 CDS malZ NC_003197.1 456184 458001 D maltodextrin glucosidase 456184..458001 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251920 NP_459397.1 CDS STM0402 NC_003197.1 458073 458675 R thiol-alkyl hydroperoxide reductase complement(458073..458675) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251921 NP_459398.1 CDS yajB NC_003197.1 458885 459466 R Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; acyl carrier protein phosphodiesterase complement(458885..459466) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251922 NP_459399.1 CDS queA NC_003197.1 459560 460624 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 459560..460624 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251923 NP_459400.1 CDS tgt NC_003197.1 460821 461948 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 460821..461948 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251924 NP_459401.1 CDS yajC NC_003197.1 461971 462303 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase membrane subunit 461971..462303 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251925 NP_459402.1 CDS secD NC_003197.1 462331 464178 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 462331..464178 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251926 NP_459403.1 CDS secF NC_003197.1 464189 465160 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 464189..465160 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251927 NP_459404.1 CDS STM0409 NC_003197.1 465308 465673 D hypothetical protein 465308..465673 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251928 NP_459405.1 CDS STM0410 NC_003197.1 465699 466391 D regulatory protein 465699..466391 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251929 NP_459406.1 CDS STM0411 NC_003197.1 466561 466908 D hypothetical 12.6 kDa protein in secF-tsx intergenic region (SW:YAJD_SALTY); hypothetical protein 466561..466908 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251930 NP_459408.1 CDS tsx NC_003197.1 467537 468400 R nucleoside-specific channel-forming protein TSX (SW:TSX_SALTY); receptor of phage T6 and colicin K; nucleoside-specific channel-forming protein complement(467537..468400) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251932 NP_459409.1 CDS yajI NC_003197.1 468700 469239 R outer membrane lipoprotein complement(468700..469239) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251933 NP_459410.1 CDS nrdR NC_003197.1 469391 469840 D transcriptional repressor NrdR 469391..469840 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251934 NP_459411.1 CDS ribD NC_003197.1 469844 470947 D riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 469844..470947 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251935 NP_459412.1 CDS ribH NC_003197.1 471036 471506 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 471036..471506 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251936 NP_459413.1 CDS nusB NC_003197.1 471527 471946 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 471527..471946 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251937 NP_459414.1 CDS thiL NC_003197.1 472025 473002 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 472025..473002 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251938 NP_459415.1 CDS pgpA NC_003197.1 472980 473495 D hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 472980..473495 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251939 NP_459416.1 CDS yajO NC_003197.1 473599 474573 R 2-carboxybenzaldehyde reductase complement(473599..474573) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251940 NP_459417.1 CDS dxs NC_003197.1 474630 476492 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(474630..476492) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251941 NP_459418.1 CDS ispA NC_003197.1 476516 477415 R geranyltranstransferase complement(476516..477415) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251942 NP_459419.1 CDS xseB NC_003197.1 477416 477658 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(477416..477658) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251943 NP_459420.1 CDS thiI NC_003197.1 477868 479316 D Thiamine biosynthesis protein ThiI; Required for the synthesis of the thiazole moiety; tRNA sulfurtransferase 477868..479316 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251944 NP_459421.1 CDS phnV NC_003197.1 479360 480157 R probable membrane component of 2-aminoethylphosphonate transporter PhnV; 2-aminoethylphosphonate ABC transporter permease PhnV complement(479360..480157) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251945 NP_459422.1 CDS phnU NC_003197.1 480160 481020 R probable membrane component of 2-aminoethylphosphonate transporter PhnU; 2-aminoethylphosphonate ABC transporter permease PhnU complement(480160..481020) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251946 NP_459423.1 CDS phnT NC_003197.1 481023 482132 R probable ATPase component of 2-aminoethylphosphonate transporter PhnT; 2-aminoethylphosphonate ABC transporter ATP-binding protein PhnT complement(481023..482132) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251947 NP_459424.1 CDS phnS NC_003197.1 482138 483151 R probable periplasmic binding-protein of the2-aminoethylphosphonate transporter phnS; 2-aminoethylphosphonate ABC transporter substrate-binding protein PhnS complement(482138..483151) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251948 NP_459425.1 CDS phnR NC_003197.1 483349 484068 R probable repressor protein of GntR family PhnR; 2-aminoethylphosphonate degradation operon transcriptional regulator complement(483349..484068) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251949 NP_459426.1 CDS phnW NC_003197.1 484208 485311 D catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 484208..485311 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251950 NP_459427.1 CDS phnX NC_003197.1 485318 486130 D catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 485318..486130 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251951 NP_459428.1 CDS STM0433 NC_003197.1 486227 486817 R oxidative-stress-resistance chaperone complement(486227..486817) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251952 NP_459429.1 CDS apbA NC_003197.1 486780 487691 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(486780..487691) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251953 NP_459430.2 CDS yajQ NC_003197.1 487817 488308 D the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; phage host factor 487817..488308 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251954 NP_459431.2 CDS yajR NC_003197.1 488355 489719 R MFS family transporter complement(488355..489719) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251955 NP_459433.1 CDS STM0437 NC_003197.1 490256 491767 D periplasmic protein 490256..491767 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251957 NP_459434.1 CDS STM0438 NC_003197.1 491989 493272 D TPR repeat; hypothetical protein 491989..493272 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251958 NP_459435.1 CDS cyoE NC_003197.1 493354 494244 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(493354..494244) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251959 NP_459436.1 CDS cyoD NC_003197.1 494256 494585 R cytochrome o ubiquinol oxidase subunit IV complement(494256..494585) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251960 NP_459437.1 CDS cyoC NC_003197.1 494585 495199 R cytochrome o ubiquinol oxidase subunit III complement(494585..495199) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251961 NP_459438.1 CDS cyoB NC_003197.1 495189 497180 R cytochrome o ubiquinol oxidase subunit I complement(495189..497180) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251962 NP_459439.1 CDS cyoA NC_003197.1 497191 498147 R cytochrome o ubiquinol oxidase subunit II complement(497191..498147) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251963 NP_459440.1 CDS ampG NC_003197.1 498600 500075 R in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; MFS family muropeptide transporter complement(498600..500075) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251964 NP_459441.2 CDS yajG NC_003197.1 500119 500697 R lipoprotein complement(500119..500697) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251965 NP_459442.1 CDS bolA NC_003197.1 501001 501318 D positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress; transcriptional regulator BolA 501001..501318 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251966 NP_459443.1 CDS tig NC_003197.1 501665 502963 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 501665..502963 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251967 NP_459444.1 CDS clpP NC_003197.1 503210 503833 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 503210..503833 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251968 NP_459445.1 CDS clpX NC_003197.1 504085 505356 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 504085..505356 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251969 NP_459446.1 CDS lon NC_003197.1 505542 507896 D Lon protease 505542..507896 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251970 NP_459447.1 CDS hupB NC_003197.1 508105 508377 D histone-like DNA-binding protein; transcriptional regulator HU subunit beta 508105..508377 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251971 NP_459448.1 CDS cypD NC_003197.1 508668 510539 D peptidyl-prolyl cis-trans isomerase 508668..510539 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251972 NP_459449.1 CDS ybaV NC_003197.1 510688 511062 D DNA uptake protein 510688..511062 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251973 NP_459450.1 CDS ybaW NC_003197.1 511166 511564 D esterase 511166..511564 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251974 NP_459451.1 CDS ybaX NC_003197.1 511670 512365 R YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; 7-cyano-7-deazaguanine synthase complement(511670..512365) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251975 NP_459452.1 CDS ybaE NC_003197.1 512430 514130 R ABC transporter substrate-binding protein complement(512430..514130) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251976 NP_459453.1 CDS STM0457 NC_003197.1 514231 515049 D HMP-PP phosphatase 514231..515049 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251977 NP_459454.1 CDS STM0458 NC_003197.1 515099 516154 R cysteine synthase/cystathionine beta-synthase complement(515099..516154) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251978 NP_459455.1 CDS ybaO NC_003197.1 516267 516725 D AsnC family transcriptional regulator 516267..516725 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251979 NP_459456.1 CDS mdlA NC_003197.1 516766 518538 D multidrug ABC transporter permease/ATP-binding protein 516766..518538 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251980 NP_459457.1 CDS mdlB NC_003197.1 518531 520312 D multidrud ABC transporter permease/ATP-binding protein 518531..520312 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251981 NP_459458.1 CDS glnK NC_003197.1 520524 520862 D indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.; nitrogen regulatory protein P-II 2 520524..520862 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251982 NP_459459.1 CDS amtB NC_003197.1 520894 522180 D Amt family ammonium transporter 520894..522180 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251983 NP_459460.1 CDS tesB NC_003197.1 522280 523140 R acyl-CoA thioesterase II complement(522280..523140) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251984 NP_459461.1 CDS ybaY NC_003197.1 523355 523924 D outer membrane lipoprotein 523355..523924 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251985 NP_459462.1 CDS ybaZ NC_003197.1 523957 524346 R methyltransferase complement(523957..524346) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251986 NP_459463.1 CDS ylaB NC_003197.1 524577 526127 R diguanylate cyclase/phosphodiesterase domain 2; diguanylate cyclase/phosphodiesterase domain-containing protein complement(524577..526127) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251988 NP_459464.1 CDS rpmE2 NC_003197.1 526352 526612 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 526352..526612 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251989 NP_459465.1 CDS rpmJ NC_003197.1 526618 526758 D 50S ribosomal protein L36 526618..526758 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251990 NP_459466.1 CDS ylaC NC_003197.1 526814 527284 R inner membrane protein complement(526814..527284) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251991 NP_459467.1 CDS maa NC_003197.1 527401 527952 R maltose O-acetyltransferase complement(527401..527952) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251992 NP_459468.1 CDS hha NC_003197.1 528131 528349 R with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; hemolysin expression-modulating protein complement(528131..528349) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251993 NP_459469.1 CDS STM0474 NC_003197.1 528377 528751 R cytoplasmic protein complement(528377..528751) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251994 NP_459470.1 CDS acrB NC_003197.1 529247 532396 R RND family acridine efflux pump complement(529247..532396) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251995 NP_459471.1 CDS acrA NC_003197.1 532419 533612 R acridine efflux pump complement(532419..533612) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251996 NP_459472.1 CDS acrR NC_003197.1 533754 534407 D regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; AcrAB operon transcriptional repressor 533754..534407 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251997 NP_459473.1 CDS STM0478 NC_003197.1 534526 537888 D small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; small-conductance mechanosensitive channel 534526..537888 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251998 NP_459474.1 CDS STM0479 NC_003197.1 537930 538865 R transposase complement(537930..538865) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251999 NP_459475.1 CDS ybaM NC_003197.1 538935 539102 R inner membrane protein complement(538935..539102) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252000 NP_459476.1 CDS priC NC_003197.1 539116 539631 R PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks; primosomal replication protein N'' complement(539116..539631) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252001 NP_459477.1 CDS ybaN NC_003197.1 539712 540089 D phage protein 539712..540089 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252002 NP_459478.1 CDS apt NC_003197.1 540242 540793 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 540242..540793 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252003 NP_459479.1 CDS dnaX NC_003197.1 540907 542835 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 540907..542835 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252004 NP_459480.1 CDS ybaB NC_003197.1 542881 543210 D nucleoid-associated protein 542881..543210 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252005 NP_459481.1 CDS recR NC_003197.1 543210 543815 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 543210..543815 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252006 NP_459482.2 CDS htpG NC_003197.1 543926 545800 D heat shock protein 90; chaperone protein HtpG 543926..545800 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252007 NP_459483.1 CDS adk NC_003197.1 546041 546685 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 546041..546685 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252008 NP_459484.1 CDS hemH NC_003197.1 546914 547876 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 546914..547876 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252009 NP_459485.1 CDS aes NC_003197.1 547873 548844 R acetyl esterase complement(547873..548844) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252010 NP_459486.1 CDS gsk NC_003197.1 548997 550301 D inosine-guanosine kinase 548997..550301 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252011 NP_459487.1 CDS ybaL NC_003197.1 550350 552026 R YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; CPA2 family transport protein complement(550350..552026) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252012 NP_459488.1 CDS fsr NC_003197.1 552241 553461 R MFS family transporter complement(552241..553461) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252013 NP_459489.1 CDS ushA NC_003197.1 553634 555286 D cryptic in Salmonella enterica str. LT2 due to the change from a serine to a tyrosine at position 139 which eliminates the 5' nucleosidase activity PMID:11429468; silent protein UshA 553634..555286 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252014 NP_459490.1 CDS ybaK NC_003197.1 555403 555882 R Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase complement(555403..555882) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252015 NP_459491.1 CDS ybaP NC_003197.1 556084 556878 R cytoplasmic protein complement(556084..556878) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252016 NP_459492.1 CDS STM0497 NC_003197.1 556964 557791 R periplasmic protein complement(556964..557791) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252017 NP_459493.1 CDS copA NC_003197.1 557945 560446 R copper-exporting P-type ATPase A complement(557945..560446) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252018 NP_459494.1 CDS cueR NC_003197.1 560556 560972 D activator of copper-responsive regulon genes; HTH-type transcriptional regulator CueR 560556..560972 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252019 NP_459495.1 CDS STM0500 NC_003197.1 560973 561425 R implicated in regulation of membrane protease activity; hypothetical protein complement(560973..561425) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252020 NP_459496.1 CDS ybbK NC_003197.1 561422 562339 R inner membrane protein complement(561422..562339) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252021 NP_459497.1 CDS ybbL NC_003197.1 562486 563163 D ABC transporter ATP-binding protein 562486..563163 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252022 NP_459498.1 CDS ybbM NC_003197.1 563150 563929 D ABC transporter permease 563150..563929 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252023 NP_459499.1 CDS ybbN NC_003197.1 564015 564869 R thioredoxin protein complement(564015..564869) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252024 NP_459500.1 CDS ybbO NC_003197.1 564929 565699 R oxidoreductase complement(564929..565699) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252025 NP_459501.1 CDS tesA NC_003197.1 565854 566468 R multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 complement(565854..566468) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252026 NP_459502.1 CDS ybbA NC_003197.1 566439 567125 D ABC transporter ATP-binding protein 566439..567125 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252027 NP_459503.1 CDS ybbP NC_003197.1 567122 569536 D inner membrane protein 567122..569536 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252028 NP_459504.1 CDS STM0509 NC_003197.1 569722 570855 D outer membrane protein 569722..570855 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252029 NP_459505.1 CDS sfbA NC_003197.1 571112 571942 D Maybe involved in iron-transport and virulence in Salmonella enteriditis, PMID:10447888; expression of sfbABC is increased in epithelial cells during infection in Salmonella typhimurium SL1344, PMID:18031307; ABC transporter substrate-binding protein 571112..571942 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252030 NP_459506.1 CDS sfbB NC_003197.1 571979 572995 D May be involved in virulence, expression of sfbABC is increased in epithelial cells during infection in Salmonella typhimurium SL1344, PMID:18031307; ABC transporter ATPase 571979..572995 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252031 NP_459507.1 CDS sfbC NC_003197.1 572988 573647 D May be involved in virulence; expression of sfbABC is increased in epithelial cells during infection in Salmonella typhimurium SL1344, PMID:18031307; ABC transporter permease 572988..573647 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252032 NP_459508.1 CDS ybbB NC_003197.1 573686 574780 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(573686..574780) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252033 NP_459509.1 CDS ybbS NC_003197.1 574850 575776 R activator of the allDC-ylbA operon involved in allantoin utilization; HTH-type transcriptional activator AllS complement(574850..575776) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252034 NP_459510.1 CDS allA NC_003197.1 576003 576485 D catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate lyase 576003..576485 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252035 NP_459511.1 CDS allR NC_003197.1 576564 577382 D regulates operons involved in the utilization of allantoin; HTH-type transcriptional repressor AllR 576564..577382 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252036 NP_459512.1 CDS gcl NC_003197.1 577467 579248 D catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 577467..579248 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252037 NP_459513.1 CDS gip NC_003197.1 579261 580037 D hydroxypyruvate isomerase 579261..580037 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252038 NP_459514.1 CDS glxR NC_003197.1 580138 581016 D tartronic semialdehyde reductase 580138..581016 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252039 NP_459515.1 CDS STM0520 NC_003197.1 581082 582329 D permease 581082..582329 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252040 NP_459516.1 CDS ybbV NC_003197.1 582405 582659 D cytoplasmic protein 582405..582659 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252041 NP_459517.1 CDS allP NC_003197.1 582566 583879 D allantoin permease 582566..583879 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252042 NP_459518.1 CDS allB NC_003197.1 583958 585319 D Plays a crucial role on both purine and pyrimidine metabolism; allantoinase 583958..585319 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252043 NP_459519.1 CDS ybbY NC_003197.1 585378 586676 D uraxil/xanthine transporter 585378..586676 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252044 NP_459520.1 CDS glxK NC_003197.1 586699 587847 D glycerate kinase 586699..587847 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252045 NP_459521.1 CDS STM0526 NC_003197.1 587927 588712 R hypothetical protein complement(587927..588712) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252046 NP_459522.1 CDS allC NC_003197.1 588723 589958 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(588723..589958) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252047 NP_459523.1 CDS allD NC_003197.1 589980 591029 R ureidoglycolate dehydrogenase complement(589980..591029) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252048 NP_459524.1 CDS fdrA NC_003197.1 591360 593024 D multicopy suppressor of dominant negative ftsH mutations; acyl-CoA synthetase 591360..593024 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252049 NP_459525.1 CDS STM0530 NC_003197.1 593034 594293 D cytoplasmic protein 593034..594293 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252050 NP_459526.1 CDS STM0531 NC_003197.1 594305 595114 D cytoplasmic protein 594305..595114 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252051 NP_459527.1 CDS arcC NC_003197.1 595118 596011 D forms a homodimer; may be used to synthesize carbomyl phosphate from ATP and carbamate; carbamate kinase 595118..596011 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252052 NP_459528.1 CDS purK NC_003197.1 596052 597119 R catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide; N5-carboxyaminoimidazole ribonucleotide synthase complement(596052..597119) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252053 NP_459529.1 CDS purE NC_003197.1 597116 597625 R catalyzes the interconversion of N5-carboxyaminoimidazole ribonucleotide and 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate; N5-carboxyaminoimidazole ribonucleotide mutase complement(597116..597625) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252054 NP_459530.1 CDS lpxH NC_003197.1 597743 598465 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase complement(597743..598465) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252055 NP_459531.1 CDS ppiB NC_003197.1 598468 598962 R peptidyl-prolyl cis-trans isomerase complement(598468..598962) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252056 NP_459532.1 CDS cysS NC_003197.1 599135 600520 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteine--tRNA ligase 599135..600520 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252057 NP_459533.1 CDS STM0538 NC_003197.1 600564 601388 R outer membrane protein complement(600564..601388) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252058 NP_459534.1 CDS STM0539 NC_003197.1 601385 601822 R inner membrane protein complement(601385..601822) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252059 NP_459535.1 CDS ybcI NC_003197.1 601815 602360 R membrane-bound metal-dependent hydrolase complement(601815..602360) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252060 NP_459536.1 CDS ybcJ NC_003197.1 602488 602700 R cytoplasmic protein complement(602488..602700) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252061 NP_459537.1 CDS folD NC_003197.1 602702 603568 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(602702..603568) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252062 NP_459538.3 CDS fimA NC_003197.1 604115 604672 D type-1 fimbrial protein; A chain precursor; type-1A pilin (SW:FM1A_SALTY); major type 1 subunit; type-1 fimbrial protein subunit A 604115..604672 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252063 NP_459539.1 CDS fimI NC_003197.1 604748 605281 D fimbrin-like protein FimI 604748..605281 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252064 NP_459540.1 CDS fimC NC_003197.1 605325 606017 D chaperone protein FimC 605325..606017 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252065 NP_459541.1 CDS fimD NC_003197.1 606048 608660 D outer membrane usher protein FimD (SW:FIMD_SALTY); outer membrane usher protein FimD 606048..608660 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252066 NP_459542.1 CDS fimH NC_003197.1 608675 609682 D in Salmonella typhimurium str. LB5010 FimH is necessary for fimbrial adhesion and involved in the uptake of Salmonella by host cells PMID:9537754, PMID:17379714; In Salmonella typhimurium str.SL1344 this protein is involved in fimbriae assembly PMID:22778099; fimbrial adhesin FimH 608675..609682 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252067 NP_459543.1 CDS fimF NC_003197.1 609692 610210 D fimbrial-like protein FimF (SW:FIMF_SALTY); fimbrial-like protein FimF 609692..610210 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252068 NP_459544.1 CDS fimZ NC_003197.1 610256 610888 R activates the production of the major fimbrae protein FimA; transcriptional regulator FimZ complement(610256..610888) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252069 NP_459545.1 CDS fimY NC_003197.1 611492 612214 R in Salmonella typhimurium strs. LB5010 and SL1344 FimY is involved in the regulation of the fimbrial structural genes PMID:10816478; fimbrial regulatory protein FimY complement(611492..612214) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252070 NP_459546.1 CDS STM0551 NC_003197.1 612233 612544 R diguanylate cyclase/phosphodiesterase domain 0; diguanylate cyclase/phosphodiesterase domain-containing protein complement(612233..612544) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252071 NP_459547.1 CDS fimW NC_003197.1 612706 613302 R in Salmonella typhimurium strs. LB5010 and SL1344 FimY is involved in the regulation of the fimbrial structural genes PMID:11133935; fimbrial regulatory protein FimW complement(612706..613302) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252072 NP_459548.1 CDS STM0554 NC_003197.1 613593 613781 R integrase complement(613593..613781) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252074 NP_459550.1 CDS STM0557 NC_003197.1 614804 616456 R inner membrane protein complement(614804..616456) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252077 NP_459551.1 CDS yfdH NC_003197.1 616437 617363 R glycosyltransferase complement(616437..617363) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252078 NP_459552.1 CDS rfbI NC_003197.1 617360 617722 R bactoprenol-linked glucose translocase complement(617360..617722) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252079 NP_459553.1 CDS STM0561 NC_003197.1 618590 618919 R sensor histidine kinase complement(618590..618919) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252081 NP_459555.1 CDS STM0563 NC_003197.1 619258 620112 R AraC/XylS family transcriptional regulator complement(619258..620112) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252083 NP_459556.1 CDS STM0564 NC_003197.1 620328 621653 D oxidoreductase 620328..621653 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252084 NP_459557.1 CDS STM0565 NC_003197.1 621810 622046 D periplasmic protein 621810..622046 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252085 NP_459558.1 CDS STM0566 NC_003197.1 622059 622619 D inner membrane protein 622059..622619 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252086 NP_459559.1 CDS STM0567 NC_003197.1 622698 623873 R DNA repair ATPase complement(622698..623873) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252087 NP_459560.1 CDS pheP NC_003197.1 624199 625593 D APC family phenylalanine transporter 624199..625593 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252088 NP_459561.1 CDS ybdG NC_003197.1 625635 626882 R mechanosensitive channel protein complement(625635..626882) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252089 NP_459562.1 CDS apeE NC_003197.1 627193 629163 D outer membrane esterase; N-acetyl phenylalanine beta-naphthyl esterase; outer membrane N-acetyl phenylalanine beta-naphthyl ester-cleaving esterase 627193..629163 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252090 NP_459563.1 CDS STM0571 NC_003197.1 629330 632059 D inner membrane protein 629330..632059 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252091 NP_459564.1 CDS STM0572 NC_003197.1 632187 633173 R phosphosugar isomerase complement(632187..633173) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252092 NP_459565.1 CDS STM0573 NC_003197.1 633240 634283 R inner membrane protein complement(633240..634283) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252093 NP_459566.1 CDS STM0574 NC_003197.1 634316 635170 R PTS system mannose-specific transporter subunit IID complement(634316..635170) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252094 NP_459567.1 CDS STM0575 NC_003197.1 635173 635916 R PTS system mannose-specific transporter subunit IIC complement(635173..635916) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252095 NP_459568.1 CDS STM0576 NC_003197.1 635931 636401 R PTS system mannose-specific transporter subunit IIB complement(635931..636401) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252096 NP_459569.1 CDS STM0577 NC_003197.1 636379 636828 R PTS system mannose-specific transporter subunit IIB complement(636379..636828) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252097 NP_459570.1 CDS nfnB NC_003197.1 637028 637681 R catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; nitroreductase complement(637028..637681) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252098 NP_459571.1 CDS ybdF NC_003197.1 637778 638146 R cytoplasmic protein complement(637778..638146) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252099 NP_459572.1 CDS STM0580 NC_003197.1 638146 638727 R regulatory protein complement(638146..638727) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252100 NP_459573.1 CDS STM0581 NC_003197.1 639016 639357 D resistance against oxidative stress protein A; regulatory protein 639016..639357 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252101 NP_459574.1 CDS ybdJ NC_003197.1 639363 639611 R inner membrane protein complement(639363..639611) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252102 NP_459575.1 CDS ybdK NC_003197.1 639678 640796 R ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase complement(639678..640796) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252103 NP_459576.1 CDS entD NC_003197.1 640808 641512 R EntD; phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex; 4'-phosphopantetheinyl transferase complement(640808..641512) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252104 NP_459577.1 CDS fepA NC_003197.1 641558 643813 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane porin complement(641558..643813) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252105 NP_459578.1 CDS fes NC_003197.1 644002 645216 D enterochelin esterase 644002..645216 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252106 NP_459579.1 CDS STM0587 NC_003197.1 645247 645465 D cytoplasmic protein 645247..645465 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252107 NP_459580.1 CDS entF NC_003197.1 645462 649346 D with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin; enterobactin synthase subunit F 645462..649346 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252108 NP_459581.1 CDS fepE NC_003197.1 649596 650732 D part of the ferric enterobactin transport system; necessary for enetrobactin uptake; ferric enterobactin transport protein 649596..650732 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252109 NP_459582.1 CDS fepC NC_003197.1 650785 651579 R with FepBDE is involved in the transport of ferric enterobactin; ferric-enterobactin ABC transporter ATP-binding protein FepC complement(650785..651579) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252110 NP_459583.1 CDS fepG NC_003197.1 651576 652565 R with FepBCD is involved in the transport of ferric enterobactin; ferric-enterobactin ABC transporter permease FepG complement(651576..652565) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252111 NP_459584.1 CDS fepD NC_003197.1 652565 653572 R with FepBCG is involved in the transport of ferric enterobactin; iron-enterobactin ABC transporter permease FepD complement(652565..653572) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252112 NP_459585.1 CDS ybdA NC_003197.1 653683 654927 D protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; enterobactin exporter EntS 653683..654927 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252113 NP_459586.1 CDS fepB NC_003197.1 654990 655946 R with FepCDG is involved in the transport of ferric enterobactin; ferric-enterobactin ABC transporter substrate-binding protein FepB complement(654990..655946) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252114 NP_459587.1 CDS entC NC_003197.1 656255 657430 D synthesizes isochorismate acid from chorismate; isochorismate synthase 656255..657430 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252115 NP_459588.1 CDS entE NC_003197.1 657440 659050 D enterobactin synthase subunit E; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase 657440..659050 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252116 NP_459589.1 CDS entB NC_003197.1 659064 659921 D 2,3-dihydro-2,3-dihydroxybenzoate synthetase 659064..659921 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252117 NP_459590.1 CDS entA NC_003197.1 659921 660676 D catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; 2,3-dihydroxybenzoate-2,3-dehydrogenase 659921..660676 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252118 NP_459591.1 CDS ybdB NC_003197.1 660679 661092 D prevents misacylation of EntB in enterobactin synthesis; proofreading thioesterase EntH 660679..661092 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252119 NP_459592.1 CDS cstA NC_003197.1 661274 663379 D carbon starvation protein 661274..663379 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252120 NP_459593.1 CDS ybdD NC_003197.1 663443 663640 D cytoplasmic protein 663443..663640 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252121 NP_459594.1 CDS ybdH NC_003197.1 663676 664764 R member of the iron-containing alcohol dehydrogenase family; unknown function; oxidoreductase complement(663676..664764) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252122 NP_459595.1 CDS ybdL NC_003197.1 664891 666051 D catalyzes the transfer of an amino moiety; aminotransferase 664891..666051 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252123 NP_459596.1 CDS ybdM NC_003197.1 666052 666669 R transcriptional regulator complement(666052..666669) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252124 NP_459597.1 CDS ybdN NC_003197.1 666642 667877 R PAPS reductase/FAD synthetase; 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase complement(666642..667877) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252125 NP_459598.1 CDS ybdO NC_003197.1 668043 668945 R LysR family transcriptional regulator complement(668043..668945) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252126 NP_459599.1 CDS dsbG NC_003197.1 669262 670008 R Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase complement(669262..670008) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252127 NP_459600.1 CDS ahpC NC_003197.1 670449 671012 D with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase subunit C 670449..671012 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252128 NP_459601.1 CDS ahpF NC_003197.1 671254 672819 D alkyl hydroperoxide reductase F52a subunit; detoxification of hydroperoxides; alkyl hydroperoxide reductase subunit F 671254..672819 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252129 NP_459602.1 CDS STM0610 NC_003197.1 673151 673711 D anaerobic dehydrogenase component 673151..673711 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252130 NP_459603.1 CDS STM0611 NC_003197.1 673704 675983 D oxidoreductase subunit 673704..675983 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252131 NP_459604.1 CDS STM0612 NC_003197.1 675980 676537 D hydrogenase subunit 675980..676537 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252132 NP_459605.1 CDS STM0613 NC_003197.1 676537 677304 D hydrogenase subunit 676537..677304 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252133 NP_459606.1 CDS uspG NC_003197.1 677372 677800 R universal stress protein G complement(677372..677800) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252134 NP_459607.1 CDS ybdR NC_003197.1 678023 679261 D dehydrogenase 678023..679261 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252135 NP_459608.1 CDS rnk NC_003197.1 679344 679754 R Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator complement(679344..679754) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252136 NP_459609.1 CDS rna NC_003197.1 679989 680795 R cleaves phosphodiester bond between any two nucleotides; RNase I complement(679989..680795) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252137 NP_459610.1 CDS citT NC_003197.1 680905 682368 R citrate/succinate transporter complement(680905..682368) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252138 NP_459611.1 CDS citG NC_003197.1 682406 683302 R catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA; 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase complement(682406..683302) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252139 NP_459612.1 CDS citX NC_003197.1 683274 683825 R 2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate; apo-citrate lyase phosphoribosyl-dephospho-CoA transferase complement(683274..683825) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252140 NP_459613.1 CDS citF NC_003197.1 683829 685358 R citrate lyase subunit alpha/citrate-ACP transferase complement(683829..685358) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252141 NP_459614.1 CDS citE NC_003197.1 685368 686276 R citrate lyase subunit beta complement(685368..686276) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252142 NP_459615.1 CDS citD NC_003197.1 686273 686569 R acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma complement(686273..686569) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252143 NP_459616.1 CDS citC NC_003197.1 686566 687642 R citrate lyase synthetase complement(686566..687642) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252144 NP_459617.1 CDS dpiB NC_003197.1 688027 689688 D sensory histidine kinase 688027..689688 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252145 NP_459618.1 CDS dpiA NC_003197.1 689657 690337 D regulates the expression of citAB in citrate fermentation; two-component response regulator DpiA 689657..690337 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252146 NP_459619.1 CDS dcuC NC_003197.1 690391 691776 R responsible for the transport of C4-dicarboxylates during anaerobic growth; DcuC family dicarboxylate transporter complement(690391..691776) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252147 NP_459620.1 CDS pagP NC_003197.1 692155 692727 D catalyzes the transfer of palmitate to lipid A; lipid A palmitoyltransferase PagP 692155..692727 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252148 NP_459621.1 CDS cspE NC_003197.1 692915 693124 D member of the CspA family; negative regulator of cspA transcription; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; RNA chaperone 692915..693124 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252149 NP_459622.1 CDS ccrB NC_003197.1 693182 693565 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; fluoride ion transporter complement(693182..693565) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252150 NP_459623.1 CDS ybeM NC_003197.1 693656 694444 D hydrolase 693656..694444 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252151 NP_459624.1 CDS tatE NC_003197.1 694573 694776 D TatE part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; Sec-independent protein translocase protein TatE 694573..694776 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252152 NP_459625.1 CDS lipA NC_003197.1 694862 695827 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(694862..695827) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252153 NP_459626.1 CDS ybeF NC_003197.1 696033 696986 R LysR family transcriptional regulator complement(696033..696986) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252154 NP_459627.2 CDS lipB NC_003197.1 697288 697929 R lipoate-protein ligase B; lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; octanoyltransferase complement(697288..697929) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252155 NP_459628.1 CDS STM0636 NC_003197.1 698029 698292 R hypothetical protein complement(698029..698292) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252156 NP_459629.1 CDS dacA NC_003197.1 698401 699612 R penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; D-alanyl-D-alanine carboxypeptidase complement(698401..699612) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252157 NP_459630.1 CDS rlpA NC_003197.1 699752 700897 R rare lipoprotein A complement(699752..700897) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252158 NP_459631.1 CDS mrdB NC_003197.1 700908 702020 R rod shape-determining membrane protein complement(700908..702020) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252159 NP_459632.1 CDS mrdA NC_003197.1 702023 703924 R cell elongation specific transpeptidase complement(702023..703924) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252160 NP_459633.1 CDS ybeA NC_003197.1 703955 704422 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase H complement(703955..704422) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252161 NP_459634.1 CDS ybeB NC_003197.1 704426 704743 R ribosomal silencing factor RsfS complement(704426..704743) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252162 NP_459635.1 CDS cobC NC_003197.1 705072 705680 R alpha-ribazole-5'-phosphate phosphatase (SW:COBC_SALTY); cobalamin synthesis; alpha ribazole-5'-P phosphatase complement(705072..705680) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252163 NP_459636.1 CDS cobD NC_003197.1 705777 706871 D cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 705777..706871 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252164 NP_459637.1 CDS nadD NC_003197.1 706846 707487 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinate-nucleotide adenylyltransferase complement(706846..707487) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252165 NP_459638.1 CDS holA NC_003197.1 707489 708520 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(707489..708520) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252166 NP_459639.1 CDS lptE NC_003197.1 708520 709110 R rare lipoprotein B; involved in the assembly of LPS in the outer membrane; LPS-assembly lipoprotein LptE complement(708520..709110) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252167 NP_459640.1 CDS leuS NC_003197.1 709125 711707 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucine--tRNA ligase complement(709125..711707) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252168 NP_459643.1 CDS STM0651 NC_003197.1 713524 714477 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 713524..714477 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252171 NP_459644.1 CDS STM0652 NC_003197.1 714545 716473 D sigma-54 dependent transcriptional regulator 714545..716473 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252172 NP_459645.1 CDS ybeL NC_003197.1 716566 717039 D cytoplasmic protein 716566..717039 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252173 NP_459646.1 CDS STM0654 NC_003197.1 717078 718073 R TPR repeat; hypothetical protein complement(717078..718073) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252174 NP_459647.1 CDS ybeR NC_003197.1 718198 718905 D cytoplasmic protein 718198..718905 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252175 NP_459648.1 CDS ybeS NC_003197.1 718902 720335 D DnaJ family molecular chaperone 718902..720335 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252176 NP_459649.1 CDS ybeU NC_003197.1 720347 721042 D cytoplasmic protein 720347..721042 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252177 NP_459650.1 CDS ybeV NC_003197.1 721039 722511 D DnaJ family; DnaJ family molecular chaperone 721039..722511 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252178 NP_459651.1 CDS hscC NC_003197.1 722533 724212 R heatshock protein complement(722533..724212) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252179 NP_459652.1 CDS STM0660 NC_003197.1 724288 725526 R cytoplasmic protein complement(724288..725526) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252180 NP_459653.1 CDS rihA NC_003197.1 725558 726493 R Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; pyrimidine-specific ribonucleoside hydrolase RihA complement(725558..726493) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252181 NP_459654.1 CDS gltL NC_003197.1 726610 727335 R glutamate/aspartate ABC transporter ATP-binding protein complement(726610..727335) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252182 NP_459655.1 CDS gltK NC_003197.1 727335 728009 R glutamate/aspartate ABC transporter permease complement(727335..728009) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252183 NP_459656.1 CDS gltJ NC_003197.1 728009 728749 R glutamate/aspartate ABC transporter permease complement(728009..728749) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252184 NP_459657.1 CDS gltI NC_003197.1 728909 729835 R glutamate/aspartate ABC transporter substrate-binding protein complement(728909..729835) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252185 NP_459658.1 CDS lnt NC_003197.1 730172 731710 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(730172..731710) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252186 NP_459659.1 CDS corC NC_003197.1 731730 732608 R magnesium/cobalt efflux protein CorC complement(731730..732608) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252187 NP_459660.1 CDS ybeY NC_003197.1 732766 733239 R endoribonuclease complement(732766..733239) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252188 NP_459661.2 CDS phoL NC_003197.1 733236 734282 R phosphate starvation-inducible protein complement(733236..734282) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252189 NP_459662.1 CDS miaB NC_003197.1 734487 735911 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(734487..735911) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252190 NP_459663.1 CDS ubiF NC_003197.1 736055 737230 D catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 736055..737230 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252191 NP_459664.1 CDS STM0672 NC_003197.1 737297 737872 R inner membrane protein complement(737297..737872) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252192 NP_459665.1 CDS asnB NC_003197.1 738939 740603 R functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase complement(738939..740603) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252200 NP_459666.1 CDS nagD NC_003197.1 740893 741645 R UMP phosphatase complement(740893..741645) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252201 NP_459667.1 CDS nagC NC_003197.1 741692 742912 R N-acetylglucosamine operon transcriptional repressor complement(741692..742912) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252202 NP_459668.1 CDS nagA NC_003197.1 742917 744071 R catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase complement(742917..744071) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252203 NP_459669.1 CDS nagB NC_003197.1 744131 744931 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase complement(744131..744931) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252204 NP_459670.1 CDS nagE NC_003197.1 745258 747210 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system N-acetyl glucosamine specific transporter subunit IIABC 745258..747210 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252205 NP_459671.1 CDS glnS NC_003197.1 747421 749088 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutamine--tRNA ligase 747421..749088 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252206 NP_459672.1 CDS ybfM NC_003197.1 749534 750940 D required for uptake of chitin-derived oligosaccharides; chitoporin 749534..750940 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252207 NP_459673.1 CDS ybfN NC_003197.1 750990 751322 D lipoprotein 750990..751322 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252208 NP_459674.1 CDS STM0689 NC_003197.1 751371 752675 R is involved in the uptake of citrate and the transport of protons into the cell; also involved in the transport of tricarballylate; citrate/tricarballylate transportrer complement(751371..752675) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252209 NP_459675.1 CDS tcuB NC_003197.1 752726 753865 R with CitA (TcuA) catalyzes the oxidation of tricarballylate to cis-aconitate; originally thought to be involved in citrate utilization; tricarballylate utilization protein B complement(752726..753865) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252210 NP_459676.1 CDS STM0691 NC_003197.1 753852 755255 R catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase complement(753852..755255) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252211 NP_459677.1 CDS STM0692 NC_003197.1 755353 756279 R LysR family transcriptional regulator complement(755353..756279) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252212 NP_459678.1 CDS fur NC_003197.1 756394 756846 R negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator complement(756394..756846) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252213 NP_459679.1 CDS fldA NC_003197.1 757128 757658 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(757128..757658) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252214 NP_459680.1 CDS ybfE NC_003197.1 757809 758102 R LexA-regulated; LexA regulated protein complement(757809..758102) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252215 NP_459681.1 CDS STM0696 NC_003197.1 758236 759006 R hypothetical protein complement(758236..759006) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252216 NP_459682.1 CDS seqA NC_003197.1 759191 759733 D negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 759191..759733 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252217 NP_459683.1 CDS pgm NC_003197.1 759758 761398 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 759758..761398 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252218 NP_459684.1 CDS STM0699 NC_003197.1 761513 761998 R cytoplasmic protein complement(761513..761998) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252219 NP_459685.1 CDS potE NC_003197.1 762063 763382 R catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; APC family putrescine/ornithine antiporter complement(762063..763382) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252220 NP_459686.1 CDS speF NC_003197.1 763379 765577 R ornithine decarboxylase complement(763379..765577) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252221 NP_459687.1 CDS kdpE NC_003197.1 766339 767016 R response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; response regulator KdpE complement(766339..767016) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252222 NP_459688.1 CDS kdpD NC_003197.1 767013 769697 R sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; sensor histidine kinase KdpD complement(767013..769697) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252223 NP_459689.1 CDS kdpC NC_003197.1 769694 770278 R One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C complement(769694..770278) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252224 NP_459690.1 CDS kdpB NC_003197.1 770287 772335 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B complement(770287..772335) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252225 NP_459691.1 CDS kdpA NC_003197.1 772356 774035 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(772356..774035) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252226 NP_459692.1 CDS kdpF NC_003197.1 774035 774124 R one of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit F complement(774035..774124) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252227 NP_459693.1 CDS ybfA NC_003197.1 774461 774667 D periplasmic protein 774461..774667 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252228 NP_459694.1 CDS phrB NC_003197.1 774778 776199 D UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; deoxyribodipyrimidine photolyase 774778..776199 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252229 NP_459695.1 CDS STM0710 NC_003197.1 776238 777719 R dipeptide permease D complement(776238..777719) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252230 NP_459696.1 CDS ybgI NC_003197.1 778048 778791 D GTP cyclohydrolase 778048..778791 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252231 NP_459697.1 CDS ybgJ NC_003197.1 778807 779463 D carboxylase 778807..779463 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252232 NP_459698.1 CDS ybgK NC_003197.1 779457 780389 D carboxylase 779457..780389 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252233 NP_459699.1 CDS STM0714 NC_003197.1 780379 781113 D hypothetical protein 780379..781113 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252234 NP_459700.1 CDS STM0715 NC_003197.1 781437 781568 D cytoplasmic protein 781437..781568 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252235 NP_459701.1 CDS STM0716 NC_003197.1 781628 782194 D phage integrase 781628..782194 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252236 NP_459702.1 CDS STM0717 NC_003197.1 782654 782989 D inner membrane protein 782654..782989 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252237 NP_459703.1 CDS STM0718 NC_003197.1 782991 783731 D cytoplasmic protein 782991..783731 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252238 NP_459704.1 CDS STM0719 NC_003197.1 784017 785168 D UDP-galactopyranose mutase 784017..785168 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252239 NP_459705.1 CDS STM0720 NC_003197.1 785165 786061 D glycosyl transferase 785165..786061 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252240 NP_459706.1 CDS STM0721 NC_003197.1 786074 787207 D glycosyl transferase 786074..787207 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252241 NP_459707.1 CDS STM0722 NC_003197.1 787336 788106 D ABC transporter permease 787336..788106 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252242 NP_459708.1 CDS STM0723 NC_003197.1 788110 788820 D polysaccharide/polyol phosphate ABC transporter ATPase 788110..788820 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252243 NP_459709.1 CDS STM0724 NC_003197.1 788914 790692 D cell wall biogenesis; glycosyltransferase 788914..790692 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252244 NP_459710.1 CDS STM0725 NC_003197.1 790885 791718 D cell wall biogenesis; glycosyltransferase 790885..791718 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252245 NP_459711.1 CDS STM0726 NC_003197.1 791776 793671 D glycosyl transferase 791776..793671 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252246 NP_459712.1 CDS STM0727 NC_003197.1 793739 793876 D cytoplasmic protein 793739..793876 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252247 NP_459713.1 CDS nei NC_003197.1 793925 794716 D 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity; endonuclease VIII 793925..794716 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252248 NP_459714.1 CDS abrB NC_003197.1 794771 795817 R transporter complement(794771..795817) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252249 NP_459715.1 CDS gltA NC_003197.1 795954 797237 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; citrate synthase complement(795954..797237) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252250 NP_459716.1 CDS STM0731 NC_003197.1 797197 797583 D inner membrane protein 797197..797583 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252251 NP_459717.1 CDS sdhC NC_003197.1 797992 798381 D succinate dehydrogenase cytochrome b556 subunit 797992..798381 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252252 NP_459718.1 CDS sdhD NC_003197.1 798375 798722 D succinate dehydrogenase cytochrome b556 small membrane subunit 798375..798722 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252253 NP_459719.1 CDS sdhA NC_003197.1 798722 800488 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 798722..800488 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252254 NP_459720.1 CDS sdhB NC_003197.1 800502 801221 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 800502..801221 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252255 NP_459721.1 CDS sucA NC_003197.1 801745 804546 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase decarboxylase subunit E1 801745..804546 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252256 NP_459722.1 CDS sucB NC_003197.1 804561 805769 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; 2-oxoglutarate dehydrogenase dihydrolipoyltranssuccinase subunit E2 804561..805769 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252257 NP_459723.1 CDS sucC NC_003197.1 805911 807077 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA ligase subunit beta 805911..807077 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252258 NP_459724.1 CDS sucD NC_003197.1 807077 807946 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA ligase subunit alpha 807077..807946 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252259 NP_459725.1 CDS cydA NC_003197.1 809529 811097 D cytochrome d terminal oxidase polypeptide subunit I 809529..811097 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252260 NP_459726.1 CDS cydB NC_003197.1 811113 812252 D cytochrome d terminal oxidase polypeptide subunit II 811113..812252 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252261 NP_459727.1 CDS ybgT NC_003197.1 812267 812380 D outer membrane lipoprotein 812267..812380 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252262 NP_459728.1 CDS ybgE NC_003197.1 812517 812798 D inner membrane protein 812517..812798 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252263 NP_459729.1 CDS ybgC NC_003197.1 813027 813431 D catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; acyl-CoA thioester hydrolase 813027..813431 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252264 NP_459730.1 CDS tolQ NC_003197.1 813428 814120 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ 813428..814120 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252265 NP_459731.1 CDS tolR NC_003197.1 814124 814552 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 814124..814552 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252266 NP_459732.1 CDS tolA NC_003197.1 814617 815840 D inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins; cell envelope integrity inner membrane protein TolA 814617..815840 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252267 NP_459733.1 CDS tolB NC_003197.1 815964 817256 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 815964..817256 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252268 NP_459734.1 CDS pal NC_003197.1 817291 817815 D peptidoglycan-associated outer membrane lipoprotein 817291..817815 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252269 NP_459735.1 CDS ybgF NC_003197.1 817825 818613 D periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; periplasmic TolA-binding protein 817825..818613 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252270 NP_459736.1 CDS nadA NC_003197.1 820233 821276 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 820233..821276 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252276 NP_459737.1 CDS pnuC NC_003197.1 821301 822020 D PNUC protein (SW:PNUC_SALTY); NMN family; nicotinamide riboside transporter PnuC 821301..822020 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252277 NP_459738.1 CDS ybgR NC_003197.1 822017 822955 R involved in zinc efflux across the cytoplasmic membrane; zinc transporter ZitB complement(822017..822955) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252278 NP_459739.1 CDS STM0759 NC_003197.1 823066 823452 R hypothetical protein complement(823066..823452) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252279 NP_459740.1 CDS aroG NC_003197.1 823772 824824 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 823772..824824 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252280 NP_459741.1 CDS STM0761 NC_003197.1 824918 825463 R fumarate hydratase subunit beta complement(824918..825463) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252281 NP_459742.1 CDS STM0762 NC_003197.1 825478 826323 R Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase subunit alpha complement(825478..826323) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252282 NP_459743.2 CDS STM0763.s NC_003197.1 826453 827343 D LysR family transcriptional regulator 826453..827343 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252283 NP_459744.1 CDS STM0764 NC_003197.1 827344 828327 R LysR family transcriptional regulator complement(827344..828327) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252284 NP_459745.1 CDS STM0765 NC_003197.1 828571 829818 D cation transporter 828571..829818 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252285 NP_459746.1 CDS dcoC NC_003197.1 829868 830113 D catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 829868..830113 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252286 NP_459747.1 CDS dcoB NC_003197.1 831919 833220 D oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY); oxaloacetate decarboxylase subunit beta 831919..833220 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252288 NP_459748.1 CDS STM0769 NC_003197.1 833339 834037 D cytoplasmic protein 833339..834037 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252289 NP_459749.1 CDS STM0770 NC_003197.1 834417 835496 D cobalamin/Fe3+-siderophore ABC transporter permease 834417..835496 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252290 NP_459750.1 CDS STM0771 NC_003197.1 835496 836272 D cobalamin/Fe3+-siderophore ABC transporter ATP-binding protein 835496..836272 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252291 NP_459751.1 CDS gpmA NC_003197.1 836363 837115 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(836363..837115) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252292 NP_459752.1 CDS galM NC_003197.1 837339 838379 R catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose; aldose 1-epimerase complement(837339..838379) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252293 NP_459753.1 CDS galK NC_003197.1 838373 839521 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase complement(838373..839521) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252294 NP_459754.1 CDS galT NC_003197.1 839524 840570 R catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-phosphate uridylyltransferase complement(839524..840570) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252295 NP_459755.1 CDS galE NC_003197.1 840581 841597 R UDP-glucose 4-epimerase (SW:GALE_SALTY); UDP-galactose-4-epimerase complement(840581..841597) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252296 NP_459756.1 CDS STM0777 NC_003197.1 841820 842728 R inner membrane protein complement(841820..842728) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252297 NP_459757.1 CDS modF NC_003197.1 842899 844374 R contains 2 ATP-binding cassettes; involved in the transport of molybdenum; molybdenum ABC transporter ATP-binding protein ModF complement(842899..844374) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252298 NP_459758.1 CDS modE NC_003197.1 844442 845230 R represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; DNA-binding transcriptional repressor ModE complement(844442..845230) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252299 NP_459759.1 CDS STM0780 NC_003197.1 845359 845508 D hypothetical protein 845359..845508 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252300 NP_459760.1 CDS modA NC_003197.1 845675 846448 D with ModCB is involved in the high-affinity transport of molybdate; molybdate ABC transporter substrate-binding protein ModA 845675..846448 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252301 NP_459761.1 CDS modB NC_003197.1 846448 847137 D part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease ModB 846448..847137 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252302 NP_459762.1 CDS modC NC_003197.1 847140 848198 D Part of the ABC transporter complex modABC involved in molybdenum import; molybdate ABC transporter ATP-binding protein ModC 847140..848198 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252303 NP_459763.1 CDS ybhA NC_003197.1 848199 849017 R YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily; phosphotransferase complement(848199..849017) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252304 NP_459764.1 CDS ybhE NC_003197.1 849181 850176 D catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase 849181..850176 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252305 NP_459765.1 CDS ybhC NC_003197.1 850320 851603 R outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family; pectinesterase complement(850320..851603) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252306 NP_459766.1 CDS hutI NC_003197.1 851841 853064 D catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 851841..853064 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252307 NP_459767.1 CDS hutG NC_003197.1 853061 854002 D catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 853061..854002 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252308 NP_459768.1 CDS hutC NC_003197.1 854047 854772 D histidine utilization repressor 854047..854772 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252309 NP_459769.1 CDS hutH NC_003197.1 856655 858175 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 856655..858175 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252311 NP_459770.1 CDS ybhB NC_003197.1 858260 858736 R kinase inhibitor protein complement(858260..858736) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252312 NP_459771.1 CDS bioA NC_003197.1 858794 860083 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine--8-amino-7-oxononanoate aminotransferase complement(858794..860083) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252313 NP_459772.1 CDS bioB NC_003197.1 860170 861210 D biotin synthetase 860170..861210 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252314 NP_459773.1 CDS bioF NC_003197.1 861207 862364 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 861207..862364 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252315 NP_459774.1 CDS bioC NC_003197.1 862348 863103 D biotin biosynthesis protein BioC; methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth; malonyl-ACP O-methyltransferase 862348..863103 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252316 NP_459775.1 CDS bioD NC_003197.1 863096 863782 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 863096..863782 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252317 NP_459776.1 CDS uvrB NC_003197.1 864433 866454 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 864433..866454 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252318 NP_459778.1 CDS slrP NC_003197.1 866944 869241 D leucine-rich repeat protein SlrP; secreted by SPI-1; type III secretion; E3 ubiquitin-protein ligase SlrP 866944..869241 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252320 NP_459779.1 CDS STM0801 NC_003197.1 869333 870241 R hypothetical protein complement(869333..870241) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252321 NP_459780.1 CDS moaA NC_003197.1 870638 871627 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; cyclic pyranopterin monophosphate synthase 870638..871627 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252322 NP_459781.1 CDS moaB NC_003197.1 871649 872161 D molybdopterin biosynthesis protein B 871649..872161 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252323 NP_459782.1 CDS moaC NC_003197.1 872164 872649 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; cyclic pyranopterin monophosphate synthase accessory protein 872164..872649 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252324 NP_459783.2 CDS moaD NC_003197.1 872642 872887 D with MoaE catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 872642..872887 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252325 NP_459784.1 CDS moaE NC_003197.1 872889 873341 D with MoaD catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase catalytic subunit 872889..873341 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252326 NP_459785.1 CDS ybhL NC_003197.1 873389 874093 D permease 873389..874093 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252327 NP_459786.1 CDS ybhM NC_003197.1 874240 874947 D integral membrane protein 874240..874947 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252328 NP_459787.1 CDS STM0809 NC_003197.1 874971 875579 D inner membrane protein 874971..875579 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252329 NP_459788.1 CDS STM0810 NC_003197.1 875587 876147 D inner membrane protein 875587..876147 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252330 NP_459789.1 CDS ybhN NC_003197.1 876150 877112 R negative regulator complement(876150..877112) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252331 NP_459790.1 CDS ybhO NC_003197.1 877112 878353 R cardiolipin synthase complement(877112..878353) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252332 NP_459791.1 CDS ybhP NC_003197.1 878350 879108 R cytoplasmic protein complement(878350..879108) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252333 NP_459792.1 CDS ybhQ NC_003197.1 879241 879651 D inner membrane protein 879241..879651 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252334 NP_459793.1 CDS ybhR NC_003197.1 879613 880719 R ABC superfamily membrane protein; ABC transporter permease complement(879613..880719) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252335 NP_459794.1 CDS ybhS NC_003197.1 880835 881965 R ABC superfamily membrane protein; ABC transporter permease complement(880835..881965) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252336 NP_459795.1 CDS ybhF NC_003197.1 881958 883694 R ABC transporter ATP-binding protein complement(881958..883694) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252337 NP_459796.1 CDS STM0818 NC_003197.1 883687 884682 R hypothetical protein complement(883687..884682) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252338 NP_459797.1 CDS ybiH NC_003197.1 884682 885356 R etR/AcrR family transcriptional regulator complement(884682..885356) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252339 NP_459798.1 CDS rhlE NC_003197.1 885586 886950 D this helicase is not essential cell growth; ATP-dependent RNA helicase RhlE 885586..886950 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252340 NP_459799.1 CDS dinG NC_003197.1 887158 889302 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 887158..889302 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252341 NP_459800.1 CDS ybiB NC_003197.1 889332 890306 D transferase 889332..890306 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252342 NP_459801.1 CDS ybiJ NC_003197.1 890462 890722 R periplasmic protein complement(890462..890722) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252343 NP_459802.1 CDS ybiI NC_003197.1 891007 891273 R DnaK suppressor protein complement(891007..891273) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252344 NP_459803.1 CDS STM0826 NC_003197.1 891478 892404 D rRNA large subunit methyltransferase 891478..892404 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252345 NP_459804.1 CDS ybiO NC_003197.1 892401 894623 R mechanosensitive channel protein complement(892401..894623) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252346 NP_459805.1 CDS glnQ NC_003197.1 894742 895464 R glutamine ABC transporter ATP-binding protein complement(894742..895464) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252347 NP_459806.1 CDS glnP NC_003197.1 895461 896120 R glutamine ABC transporter permease complement(895461..896120) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252348 NP_459807.1 CDS glnH NC_003197.1 896264 897010 R glutamine ABC transporter substrate-binding protein complement(896264..897010) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252349 NP_459808.1 CDS dps NC_003197.1 897487 897990 R binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA starvation/stationary phase protection protein complement(897487..897990) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252350 NP_459809.1 CDS ybiF NC_003197.1 898293 899180 R hypothetical protein in dps-ompX intergenic region (SW:YBIF_SALTY); threonine/homoserine exporter RhtA complement(898293..899180) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252351 NP_459810.1 CDS ompX NC_003197.1 899534 900049 D OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; outer membrane protease 899534..900049 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252352 NP_459811.1 CDS ybiP NC_003197.1 900112 901692 R integral membrane protein complement(900112..901692) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252353 NP_459812.1 CDS STM0835 NC_003197.1 902271 902744 D Transcriptional regulator that represses the manganese transporter MntH when manganese is present; transcriptional regulator MntR 902271..902744 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252354 NP_459813.1 CDS ybiR NC_003197.1 902741 903853 D di-/tricarboxylate transporter 902741..903853 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252355 NP_459814.1 CDS ybiS NC_003197.1 903897 904817 R periplasmic protein complement(903897..904817) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252356 NP_459815.1 CDS ybiT NC_003197.1 905036 906628 D ABC transporter ATP-binding protein 905036..906628 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252357 NP_459816.1 CDS STM0839 NC_003197.1 907237 907980 D inner membrane protein 907237..907980 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252358 NP_459817.1 CDS STM0840 NC_003197.1 908009 908728 R HAD superfamily hydrolase complement(908009..908728) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252359 NP_459818.1 CDS ybiU NC_003197.1 908933 910198 R cytoplasmic protein complement(908933..910198) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252360 NP_459819.1 CDS STM0842 NC_003197.1 910460 911269 D HAD superfamily; HAD superfamily hydrolase 910460..911269 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252361 NP_459820.1 CDS pflF NC_003197.1 911347 913779 R pyruvate formate lyase complement(911347..913779) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252362 NP_459821.1 CDS pflE NC_003197.1 913785 914684 R pyruvate formate lyase activating enzyme complement(913785..914684) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252363 NP_459822.1 CDS moeB NC_003197.1 914962 915711 R ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin-synthase adenylyltransferase complement(914962..915711) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252364 NP_459823.2 CDS moeA NC_003197.1 915711 916946 R is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; molybdopterin molybdenumtransferase complement(915711..916946) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252365 NP_459824.1 CDS iaaA NC_003197.1 917149 918090 D isoaspartyl peptidase 917149..918090 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252366 NP_459825.1 CDS gsiA NC_003197.1 918101 919972 D with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; glutathione ABC transporter ATP-binding protein GsiA 918101..919972 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252367 NP_459826.1 CDS STM0849 NC_003197.1 920005 921543 D glutathione ABC transporter substrate-binding protein GsiB 920005..921543 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252368 NP_459827.1 CDS STM0850 NC_003197.1 921604 922524 D glutathione ABC transporter permease GsiC 921604..922524 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252369 NP_459828.1 CDS STM0851 NC_003197.1 922527 923438 D glutathione ABC transporter permease GsiD 922527..923438 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252370 NP_459829.1 CDS rimO NC_003197.1 923529 924854 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase RimO complement(923529..924854) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252371 NP_459830.1 CDS bssR NC_003197.1 925085 925468 D BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; biofilm formation regulatory protein BssR 925085..925468 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252372 NP_459831.1 CDS STM0854 NC_003197.1 926181 926696 D cytoplasmic protein 926181..926696 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252373 NP_459832.2 CDS STM0855 NC_003197.1 926719 927468 D electron transfer protein subunit beta 926719..927468 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252374 NP_459833.1 CDS STM0856 NC_003197.1 927479 928426 D electron transfer protein subunit alpha 927479..928426 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252375 NP_459834.1 CDS STM0857 NC_003197.1 928720 929883 D acyl-CoA dehydrogenase 928720..929883 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252376 NP_459835.1 CDS STM0858 NC_003197.1 930332 932017 D dehydrogenase 930332..932017 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252377 NP_459836.1 CDS STM0859 NC_003197.1 932023 932913 R LysR family transcriptional regulator complement(932023..932913) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252378 NP_459837.1 CDS STM0860 NC_003197.1 933178 933603 R inner membrane protein complement(933178..933603) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252379 YP_006892380.1 CDS STM0861 NC_003197.1 933950 934630 D dehydrogenase 933950..934630 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252380 NP_459839.1 CDS yliJ NC_003197.1 934627 935253 R glutathione S-transferase complement(934627..935253) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252381 NP_459840.1 CDS dacC NC_003197.1 935497 936699 D penicillin-binding protein 6a; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 935497..936699 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252382 NP_459841.1 CDS deoR NC_003197.1 936744 937502 R DeoR family transcriptional repressor complement(936744..937502) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252383 NP_459842.1 CDS ybjG NC_003197.1 937574 938182 R undecaprenyl pyrophosphate phosphatase complement(937574..938182) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252384 NP_459843.1 CDS mdfA NC_003197.1 938495 939727 D multidrug translocase 938495..939727 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252385 NP_459844.1 CDS STM0867 NC_003197.1 939781 940596 R hydrolase complement(939781..940596) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252386 NP_459845.1 CDS STM0868 NC_003197.1 940593 941804 R transport protein/regulator complement(940593..941804) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252387 NP_459846.1 CDS STM0869 NC_003197.1 941972 942592 D TetR/Acr family regulator 941972..942592 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252388 NP_459847.1 CDS STM0870 NC_003197.1 942709 944394 R transport protein complement(942709..944394) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252389 NP_459848.1 CDS ybjM NC_003197.1 944665 945042 D inner membrane protein 944665..945042 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252390 NP_459849.1 CDS grxA NC_003197.1 945074 945337 R functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin complement(945074..945337) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252391 NP_459850.1 CDS STM0873 NC_003197.1 945507 945797 D YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function; hypothetical protein 945507..945797 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252392 NP_459851.1 CDS mdaA NC_003197.1 945781 946503 D NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase 945781..946503 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252393 NP_459852.1 CDS rimK NC_003197.1 946561 947463 D responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; ribosomal protein S6--L-glutamate ligase 946561..947463 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252394 NP_459853.1 CDS ybjN NC_003197.1 947560 948036 D cytoplasmic protein 947560..948036 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252395 NP_459854.1 CDS potF NC_003197.1 948385 949497 D putrescine ABC transporter substrate-binding protein PotF 948385..949497 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252396 NP_459855.1 CDS potG NC_003197.1 949585 950718 D part of the PotFGHI ATP-dependent putrescine transporter; putrescine ABC transporter ATP-binding protein PotG 949585..950718 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252397 NP_459856.1 CDS potH NC_003197.1 950728 951681 D putrescine ABC transporter permease PotH 950728..951681 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252398 NP_459857.1 CDS potI NC_003197.1 951678 952523 D putrescine ABC transporter permease PotH 951678..952523 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252399 NP_459858.1 CDS ybjO NC_003197.1 952597 953070 D inner membrane protein 952597..953070 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252400 NP_459859.1 CDS rumB NC_003197.1 953113 954243 D RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA (uracil(747)-C(5))-methyltransferase 953113..954243 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252401 NP_459860.1 CDS ulaA NC_003197.1 954526 955869 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 954526..955869 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252402 NP_459861.1 CDS STM0885 NC_003197.1 955899 956219 D inner membrane protein 955899..956219 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252403 NP_459862.1 CDS STM0886 NC_003197.1 956229 957716 D sulfatase 956229..957716 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252404 NP_459863.1 CDS artJ NC_003197.1 957935 958666 R arginine ABC transporter substrate-binding protein ArtJ complement(957935..958666) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252405 NP_459864.1 CDS artM NC_003197.1 958903 959571 R with ArtPQJI acts to transport arginine across the inner membrane; arginine ABC transporter permease ArtM complement(958903..959571) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252406 NP_459865.1 CDS artQ NC_003197.1 959571 960287 R with ArtPMJI transports arginine across the inner membrane; arginine ABC transporter permease ArtQ complement(959571..960287) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252407 NP_459866.1 CDS artI NC_003197.1 960294 961025 R arginine ABC transporter substrate-binding protein ArtI complement(960294..961025) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252408 NP_459867.1 CDS artP NC_003197.1 961043 961771 R With ArtMQJI transports arginine across the inner membrane; arginine ABC transporter ATP-binding protein ArtP complement(961043..961771) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252409 NP_459868.1 CDS ybjP NC_003197.1 962001 962516 R induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; lipoprotein complement(962001..962516) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252410 NP_459869.1 CDS STM0893 NC_003197.1 962612 963937 R integrase complement(962612..963937) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252411 NP_459870.1 CDS STM0894 NC_003197.1 963965 964207 R excisionase complement(963965..964207) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252412 NP_951048.1 CDS STM0895.1n NC_003197.1 964215 964361 R hypothetical protein complement(964215..964361) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673774 NP_459871.1 CDS STM0895 NC_003197.1 964573 964881 R hypothetical protein complement(964573..964881) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252413 NP_459872.1 CDS STM0896 NC_003197.1 965341 965733 R hypothetical protein complement(965341..965733) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252414 NP_459873.1 CDS STM0897 NC_003197.1 966309 966725 R hypothetical protein complement(966309..966725) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252415 YP_006892381.1 CDS STM04865 NC_003197.1 967046 967231 R hypothetical protein complement(967046..967231) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865726 YP_006892382.1 CDS STM04870 NC_003197.1 967228 967422 R hypothetical protein complement(967228..967422) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865707 YP_006892383.1 CDS STM04875 NC_003197.1 967415 967732 R hypothetical protein complement(967415..967732) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865719 NP_459874.1 CDS STM0898 NC_003197.1 967911 968606 R prophage transcriptional regulator complement(967911..968606) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252416 NP_459875.1 CDS STM0898A NC_003197.1 968719 968973 D hypothetical protein 968719..968973 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252417 NP_459876.1 CDS STM0899 NC_003197.1 969473 969841 D hypothetical protein 969473..969841 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252418 NP_459877.1 CDS STM0900 NC_003197.1 969999 971582 D prophage helicase 969999..971582 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252419 NP_459878.1 CDS STM0901 NC_003197.1 971579 972547 D prophage DNA primase 971579..972547 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252420 NP_459879.1 CDS STM0902 NC_003197.1 972547 973407 D hypothetical protein 972547..973407 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252421 NP_459880.1 CDS STM0903 NC_003197.1 973404 974219 D prophage chaperone 973404..974219 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252422 NP_459881.1 CDS STM0904 NC_003197.1 974374 974766 R hypothetical protein complement(974374..974766) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252423 NP_459882.1 CDS STM0905 NC_003197.1 975824 976222 D hypothetical protein 975824..976222 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252424 NP_459883.1 CDS STM0906 NC_003197.1 976812 977156 D hypothetical protein 976812..977156 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252425 NP_459884.1 CDS STM0907 NC_003197.1 977159 977773 D prophage chitinase 977159..977773 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252426 NP_459885.1 CDS STM0908 NC_003197.1 977770 978255 D bacteriophage ES18 gp15 protein; hypothetical protein 977770..978255 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252427 YP_006892384.1 CDS STM04890 NC_003197.1 978547 978738 R hypothetical protein complement(978547..978738) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865702 YP_006892385.1 CDS STM04895 NC_003197.1 978814 979038 R hypothetical protein complement(978814..979038) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865717 NP_459886.1 CDS STM0909 NC_003197.1 979090 979581 D hypothetical protein 979090..979581 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252428 NP_459887.1 CDS STM0910 NC_003197.1 979568 981676 D hypothetical protein 979568..981676 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252429 NP_459888.1 CDS STM0911 NC_003197.1 981876 983411 D hypothetical protein 981876..983411 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252430 NP_459889.2 CDS STM0912 NC_003197.1 983374 985449 D ATP-dependent Clp protease proteolytic subunit 983374..985449 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252431 NP_459890.1 CDS STM0913 NC_003197.1 985463 986134 R hypothetical protein complement(985463..986134) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252432 NP_459891.1 CDS STM0914 NC_003197.1 986133 986717 D phage tail protein 986133..986717 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252433 NP_459892.1 CDS STM0915 NC_003197.1 986714 987115 D hypothetical protein 986714..987115 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252434 NP_459893.1 CDS STM0916 NC_003197.1 987126 987869 D phage major tail protein 987126..987869 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252435 NP_945158.1 CDS STM0916.1N NC_003197.1 987914 988318 D hypothetical protein 987914..988318 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673747 NP_459894.1 CDS STM0917 NC_003197.1 988336 988653 D phage minor tail protein 988336..988653 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252436 NP_459895.1 CDS STM0918 NC_003197.1 988625 991786 D phage minor tail protein 988625..991786 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252437 NP_459896.1 CDS STM0919 NC_003197.1 991786 992115 D minor tail protein 991786..992115 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252438 NP_459897.1 CDS STM0920 NC_003197.1 992242 992760 D Ail/OmpX-like protein 992242..992760 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252439 NP_459898.1 CDS STM0921 NC_003197.1 992892 993587 D minor tail protein 992892..993587 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252440 NP_459899.1 CDS STM0922 NC_003197.1 993599 994333 D phage tail assembly protein 993599..994333 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252441 NP_459900.1 CDS STM0923 NC_003197.1 994231 994908 D phage tail assembly protein 994231..994908 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252442 NP_459901.1 CDS STM0924 NC_003197.1 994962 995486 R CuZn superoxide dismutase complement(994962..995486) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252443 NP_459902.2 CDS STM0925.S NC_003197.1 995631 999026 D host-specificity protein 995631..999026 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252444 NP_459903.1 CDS STM0926 NC_003197.1 999070 1001442 D minor tail protein 999070..1001442 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252445 NP_459904.1 CDS STM0927 NC_003197.1 1001442 1002017 D phage tail fiber assembly protein 1001442..1002017 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252446 NP_459905.1 CDS nanH NC_003197.1 1002088 1003326 R neuraminidase; sialidase complement(1002088..1003326) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252447 NP_459906.1 CDS STM0929 NC_003197.1 1003900 1004271 R inner membrane protein complement(1003900..1004271) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252448 NP_459907.1 CDS STM0930 NC_003197.1 1005367 1005690 D hypothetical protein 1005367..1005690 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252449 NP_459908.1 CDS ybjR NC_003197.1 1005687 1006517 D aminidase 1005687..1006517 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252450 NP_459909.1 CDS STM0932 NC_003197.1 1006514 1007527 R nucleoside-diphosphate-sugar epimerase complement(1006514..1007527) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252451 NP_459910.1 CDS ybjT NC_003197.1 1007623 1009056 R nucleoside-diphosphate-sugar epimerase complement(1007623..1009056) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252452 NP_459911.1 CDS ltaA NC_003197.1 1009067 1010068 R low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine; L-threonine aldolase complement(1009067..1010068) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252453 NP_459912.1 CDS poxB NC_003197.1 1010107 1011825 R catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase complement(1010107..1011825) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252454 NP_459913.1 CDS hcr NC_003197.1 1011983 1012954 R HCP oxidoreductase complement(1011983..1012954) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252455 NP_459914.1 CDS hcp NC_003197.1 1012963 1014615 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(1012963..1014615) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252456 NP_459915.1 CDS ybjE NC_003197.1 1014759 1015658 R inner membrane protein complement(1014759..1015658) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252457 NP_459916.1 CDS STM0939 NC_003197.1 1015860 1017518 D hypothetical protein 1015860..1017518 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252458 NP_459917.1 CDS ybjX NC_003197.1 1017515 1018483 R VirK-like protein complement(1017515..1018483) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252459 NP_459918.1 CDS macA NC_003197.1 1018611 1019729 D confers macrolide resistance via active drug efflux; macrolide export protein MacA 1018611..1019729 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252460 NP_459919.1 CDS macB NC_003197.1 1019726 1021672 D with MacA is involved in the export of macrolide; macrolide efflux ATP-binding protein/permease MacB 1019726..1021672 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252461 NP_459920.1 CDS cspD NC_003197.1 1021802 1022023 R stress response protein complement(1021802..1022023) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252462 NP_459921.1 CDS clpS NC_003197.1 1022347 1022667 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 1022347..1022667 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252463 NP_459922.1 CDS clpA NC_003197.1 1022698 1024974 D ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 1022698..1024974 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252464 NP_459923.1 CDS tnpA_1 NC_003197.1 1025166 1025624 D transposase for insertion sequence element IS200 (SW:T200_SALTY); insertion sequence element IS200 transposase 1025166..1025624 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252465 NP_459924.1 CDS STM0947 NC_003197.1 1026087 1026770 R integrase complement(1026087..1026770) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252466 NP_459925.1 CDS STM0948 NC_003197.1 1026941 1027342 R cytoplasmic protein complement(1026941..1027342) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252467 NP_459926.1 CDS STM0950 NC_003197.1 1027679 1028356 R SlsA protein complement(1027679..1028356) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252469 NP_459927.1 CDS STM0951 NC_003197.1 1028376 1029236 R cytoplasmic protein complement(1028376..1029236) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252470 NP_459928.1 CDS STM0952 NC_003197.1 1029345 1030256 D LysR family transcriptional regulator 1029345..1030256 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252471 NP_459929.1 CDS infA NC_003197.1 1030347 1030565 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(1030347..1030565) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252472 NP_459930.1 CDS STM0954 NC_003197.1 1030493 1030876 R inner membrane protein complement(1030493..1030876) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252473 NP_459931.1 CDS aat NC_003197.1 1030877 1031581 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(1030877..1031581) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252474 NP_459932.1 CDS cydC NC_003197.1 1031626 1033347 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter permease/ATP-binding protein CycC complement(1031626..1033347) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252475 NP_459933.1 CDS cydD NC_003197.1 1033348 1035114 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter permease/ATP-binding protein CycD complement(1033348..1035114) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252476 NP_459934.1 CDS trxB NC_003197.1 1035228 1036196 R catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; thioredoxin reductase complement(1035228..1036196) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252477 NP_459935.1 CDS lrp NC_003197.1 1036742 1037236 D mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 1036742..1037236 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252478 NP_459936.1 CDS ftsK NC_003197.1 1037371 1041426 D DNA-binding membrane protein required for chromosome resolution and partitioning; DNA translocase FtsK 1037371..1041426 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252479 NP_459937.1 CDS lolA NC_003197.1 1041566 1042180 D participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 1041566..1042180 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252480 NP_459938.1 CDS ycaJ NC_003197.1 1042190 1043533 D DNA-dependent ATPase 1042190..1043533 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252481 NP_459939.1 CDS serS NC_003197.1 1043792 1045084 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; serine--tRNA ligase 1043792..1045084 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252482 NP_459940.1 CDS dmsA NC_003197.1 1045321 1047765 D anaerobic dimethyl sulfoxide reductase subunit A 1045321..1047765 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252483 NP_459941.1 CDS dmsB NC_003197.1 1047776 1048393 D anaerobic dimethyl sulfoxide reductase subunit B 1047776..1048393 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252484 NP_459942.1 CDS dmsC NC_003197.1 1048395 1049258 D anaerobic dimethyl sulfoxide reductase subunit C 1048395..1049258 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252485 NP_459943.1 CDS ycaD NC_003197.1 1049608 1050756 D MFS family transporter protein 1049608..1050756 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252486 NP_459944.1 CDS ycaM NC_003197.1 1050974 1052395 D APC family amino-acid transporter 1050974..1052395 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252487 NP_459945.2 CDS pflA NC_003197.1 1052688 1053485 R activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 complement(1052688..1053485) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252488 NP_459946.1 CDS STM0971 NC_003197.1 1053604 1053930 R cytoplasmic protein complement(1053604..1053930) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252489 NP_459947.1 CDS STM0972 NC_003197.1 1054061 1055020 D secreted effector protein SopD2 1054061..1055020 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252490 NP_459948.1 CDS pflB NC_003197.1 1055096 1057378 R pyruvate formate lyase I complement(1055096..1057378) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252491 NP_459949.1 CDS focA NC_003197.1 1057438 1058295 R formate transporter complement(1057438..1058295) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252492 NP_459950.1 CDS ycaO NC_003197.1 1058700 1060460 R cytoplasmic protein complement(1058700..1060460) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252493 NP_459951.1 CDS ycaP NC_003197.1 1060597 1061289 D inner membrane protein 1060597..1061289 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252494 NP_459952.1 CDS serC NC_003197.1 1061475 1062563 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1061475..1062563 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252495 NP_459953.1 CDS aroA NC_003197.1 1062634 1063917 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1062634..1063917 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252496 NP_459954.1 CDS ycaL NC_003197.1 1064060 1064821 D Zn-dependent protease 1064060..1064821 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252497 NP_459955.1 CDS cmk NC_003197.1 1064994 1065677 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1064994..1065677 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252498 NP_459956.1 CDS rpsA NC_003197.1 1065791 1067464 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1065791..1067464 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252499 NP_459957.1 CDS ihfB NC_003197.1 1067620 1067904 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1067620..1067904 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252500 NP_459958.1 CDS STM0983 NC_003197.1 1068134 1070398 D hypothetical protein 1068134..1070398 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252501 NP_459959.1 CDS msbA NC_003197.1 1070435 1072183 D involved in the transport of lipid A across the inner membrane; lipid A export ATP-binding/permease 1070435..1072183 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252502 NP_459960.1 CDS lpxK NC_003197.1 1072180 1073157 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1072180..1073157 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252503 NP_459961.1 CDS ycaQ NC_003197.1 1073201 1074433 D cytoplasmic protein 1073201..1074433 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252504 NP_459962.1 CDS STM0987 NC_003197.1 1074485 1074667 D hypothetical protein 1074485..1074667 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252505 NP_459963.1 CDS kdsB NC_003197.1 1074664 1075410 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1074664..1075410 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252506 NP_459964.1 CDS STM0989 NC_003197.1 1075621 1076514 D hypothetical protein 1075621..1076514 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252507 NP_459965.1 CDS STM0990 NC_003197.1 1076494 1077270 R hypothetical protein complement(1076494..1077270) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252508 NP_459966.1 CDS smtA NC_003197.1 1077406 1078209 D S-adenosylmethionine-dependent methyltransferase 1077406..1078209 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252509 NP_459967.1 CDS mukF NC_003197.1 1078202 1079524 D condesin subunit F; acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; chromosome partition protein MukF 1078202..1079524 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252510 NP_459968.1 CDS mukE NC_003197.1 1079505 1080209 D condesin subunit E; acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; chromosome partition protein MukE 1079505..1080209 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252511 NP_459969.1 CDS mukB NC_003197.1 1080209 1084675 D SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; chromosome partition protein MukB 1080209..1084675 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252512 NP_459970.1 CDS ycbB NC_003197.1 1085020 1086861 D murein L,D-transpeptidase 1085020..1086861 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252513 NP_459971.1 CDS ycbK NC_003197.1 1087121 1087669 D outer membrane protein 1087121..1087669 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252514 NP_459972.1 CDS ycbL NC_003197.1 1087697 1088344 D metallo-beta-lactamase 1087697..1088344 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252515 NP_459973.1 CDS aspC NC_003197.1 1088406 1089596 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aspartate aminotransferase complement(1088406..1089596) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252516 NP_459974.1 CDS ompF NC_003197.1 1089781 1090872 R outer membrane protein F precursor; porin; (SW:OMPF_SALTY); outer membrane protein F complement(1089781..1090872) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252517 NP_459975.1 CDS asnC NC_003197.1 1091479 1092879 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; sparagine--tRNA ligase complement(1091479..1092879) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252518 NP_459976.1 CDS STM1001 NC_003197.1 1093080 1093541 R leucine response regulator complement(1093080..1093541) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252519 NP_459977.1 CDS STM1002 NC_003197.1 1093858 1095072 D catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 1093858..1095072 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252520 NP_459978.1 CDS STM1003 NC_003197.1 1095317 1096753 D transcriptional regulator 1095317..1096753 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252521 NP_459979.1 CDS pncB NC_003197.1 1096831 1098033 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(1096831..1098033) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252522 NP_459980.1 CDS STM1005 NC_003197.1 1098228 1099520 R integrase complement(1098228..1099520) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252523 NP_459981.1 CDS STM1006 NC_003197.1 1099565 1099813 R excisionase complement(1099565..1099813) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252524 NP_459982.1 CDS STM1007 NC_003197.1 1099854 1100093 R hypothetical protein complement(1099854..1100093) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252525 NP_459983.2 CDS STM1008.S NC_003197.1 1100136 1101245 R hypothetical protein complement(1100136..1101245) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252526 NP_459984.1 CDS STM1009 NC_003197.1 1101256 1104141 R exodeoxyribonuclease complement(1101256..1104141) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252527 NP_459985.1 CDS STM1010 NC_003197.1 1104268 1104567 R hypothetical protein complement(1104268..1104567) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252528 NP_945159.1 CDS STM1010.1n NC_003197.1 1104589 1104747 R hypothetical protein complement(1104589..1104747) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673727 NP_459986.1 CDS STM1011 NC_003197.1 1104740 1105000 R hypothetical protein complement(1104740..1105000) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252529 NP_459987.1 CDS STM1012 NC_003197.1 1105050 1105460 R probable regulatory protein; regulatory protein complement(1105050..1105460) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252530 NP_459988.1 CDS STM1013 NC_003197.1 1105785 1106159 D probable regulatory protein; regulatory protein 1105785..1106159 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252531 NP_459989.1 CDS STM1014 NC_003197.1 1106244 1107227 D probable replication protein; regulatory protein 1106244..1107227 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252532 NP_459990.1 CDS STM1015 NC_003197.1 1107230 1107979 D acts to load the DnaB helicase onto the intiation site durning DNA replication; replication protein 1107230..1107979 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252533 NP_459991.1 CDS STM1016 NC_003197.1 1107990 1108337 D hypothetical protein 1107990..1108337 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252534 NP_459992.1 CDS STM1017 NC_003197.1 1108334 1108645 D hypothetical protein 1108334..1108645 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252535 NP_459993.1 CDS STM1018 NC_003197.1 1108723 1109013 D hypothetical protein 1108723..1109013 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252536 NP_459994.1 CDS STM1019 NC_003197.1 1109305 1109538 D hypothetical protein 1109305..1109538 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252537 NP_459995.1 CDS STM1020 NC_003197.1 1109954 1110556 D hypothetical protein 1109954..1110556 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252538 NP_459996.1 CDS STM1021 NC_003197.1 1110765 1111376 D hypothetical protein 1110765..1111376 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252539 NP_951049.1 CDS STM1021.1n NC_003197.1 1111373 1111519 D hypothetical protein 1111373..1111519 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673724 NP_459997.1 CDS STM1022 NC_003197.1 1111509 1112306 D DnaJ family; molecular chaperone 1111509..1112306 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252540 NP_459998.1 CDS STM1023 NC_003197.1 1112373 1112690 D hypothetical protein 1112373..1112690 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252541 NP_459999.1 CDS STM1024 NC_003197.1 1112864 1112989 D hypothetical protein 1112864..1112989 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252542 NP_460000.1 CDS STM1025 NC_003197.1 1113125 1113574 R hypothetical protein complement(1113125..1113574) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252543 NP_460001.1 CDS STM1026 NC_003197.1 1113935 1114447 R hypothetical protein complement(1113935..1114447) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252544 NP_460002.1 CDS STM1027 NC_003197.1 1114978 1115226 D hypothetical protein 1114978..1115226 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252545 NP_460003.1 CDS STM1028 NC_003197.1 1115210 1115662 D lysozyme 1115210..1115662 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252546 NP_460004.1 CDS STM1029 NC_003197.1 1115680 1116159 D bacteriophage ES18 gp15 protein; hypothetical protein 1115680..1116159 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252547 NP_460005.1 CDS STM1030 NC_003197.1 1116367 1116900 D hypothetical protein 1116367..1116900 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252548 NP_460006.1 CDS STM1031 NC_003197.1 1116857 1118995 D hypothetical protein 1116857..1118995 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252549 NP_460007.1 CDS STM1032 NC_003197.1 1119429 1120742 D hypothetical protein 1119429..1120742 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252550 NP_460008.1 CDS STM1033 NC_003197.1 1120666 1122747 D Clp protease-like protein 1120666..1122747 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252551 NP_460009.1 CDS STM1034 NC_003197.1 1122838 1123161 D recombinase A 1122838..1123161 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252552 NP_460010.1 CDS STM1035 NC_003197.1 1123154 1123453 D ATP-binding sugar transporter-like protein 1123154..1123453 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252553 NP_460011.1 CDS STM1036 NC_003197.1 1123434 1124000 D minor tail protein 1123434..1124000 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252554 NP_460012.1 CDS STM1037 NC_003197.1 1123997 1124398 D minor tail protein 1123997..1124398 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252555 NP_460013.1 CDS STM1038 NC_003197.1 1124410 1125159 D major tail protein 1124410..1125159 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252556 NP_460014.1 CDS STM1039 NC_003197.1 1125205 1125603 D minor tail protein 1125205..1125603 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252557 NP_460015.1 CDS STM1040 NC_003197.1 1125600 1125929 D minor tail protein 1125600..1125929 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252558 NP_460016.1 CDS STM1041 NC_003197.1 1126009 1128996 D minor tail protein 1126009..1128996 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252559 NP_460017.1 CDS STM1042 NC_003197.1 1128993 1129325 D minor tail protein 1128993..1129325 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252560 NP_460018.1 CDS STM1043 NC_003197.1 1129424 1129921 D attachment/invasion protein 1129424..1129921 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252561 NP_460019.1 CDS sodC NC_003197.1 1130053 1130586 R superoxide dismutase CuZn (SW:SODC_SALTY); important virulence function; implicated in defence against macrophage killing; superoxide dismutase complement(1130053..1130586) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252562 NP_460020.1 CDS STM1045 NC_003197.1 1130676 1131371 D minor tail protein 1130676..1131371 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252563 NP_460021.1 CDS STM1046 NC_003197.1 1131381 1132118 D tail assembly protein 1131381..1132118 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252564 NP_460022.1 CDS STM1047 NC_003197.1 1132016 1132720 D tail assembly protein 1132016..1132720 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252565 NP_460023.1 CDS STM1048 NC_003197.1 1132792 1135239 D host specificity protein J 1132792..1135239 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252566 NP_945160.1 CDS STM1048.1N NC_003197.1 1135266 1136141 D hypothetical protein 1135266..1136141 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673720 YP_006892386.1 CDS STM04985 NC_003197.1 1136180 1136422 D hypothetical protein 1136180..1136422 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865701 NP_460024.1 CDS STM1049 NC_003197.1 1136476 1138914 D tail fiber protein 1136476..1138914 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252567 NP_460025.1 CDS STM1050 NC_003197.1 1138914 1139495 D tail fiber assembly like-protein 1138914..1139495 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252568 NP_460026.1 CDS sseI NC_003197.1 1139971 1140939 D required for maintaining a long-term systemic infection; secreted effector I; secreted by SPI-2; colocalizes with host polymerizing actin cytoskeleton; secreted effector protein SseI 1139971..1140939 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252569 NP_460027.1 CDS STM1053 NC_003197.1 1141587 1142213 R hypothetical protein complement(1141587..1142213) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252571 NP_460028.1 CDS STM1054 NC_003197.1 1142282 1142581 R hypothetical protein complement(1142282..1142581) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252572 NP_460029.1 CDS STM1055 NC_003197.1 1142566 1143252 R hypothetical protein complement(1142566..1143252) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252573 NP_460030.1 CDS STM1056 NC_003197.1 1143523 1143714 R hypothetical protein complement(1143523..1143714) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252574 NP_460031.1 CDS pepN NC_003197.1 1144141 1146753 D aminopeptidase N 1144141..1146753 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252575 NP_460032.1 CDS pyrD NC_003197.1 1146961 1147971 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1146961..1147971 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252576 NP_460033.1 CDS zapC NC_003197.1 1148137 1148679 D cell division protein ZapC 1148137..1148679 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252577 NP_460034.1 CDS STM1060 NC_003197.1 1148676 1149785 R iron-sulfur protein complement(1148676..1149785) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252578 NP_460035.1 CDS rlmL NC_003197.1 1149884 1151992 D RimK and RimL; catalyzes the N2-methyl guanosine modification of the G2445 residue and G2079 residue of 23S rRNA; bifunctional rRNA large subunit methyltransferase 1149884..1151992 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252579 NP_460036.1 CDS uup NC_003197.1 1152005 1153912 D Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1152005..1153912 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252580 NP_460037.1 CDS pqiA NC_003197.1 1153927 1155180 D paraquat-inducible protein A 1153927..1155180 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252581 NP_460038.1 CDS pqiB NC_003197.1 1155185 1156825 D paraquat-inducible protein B 1155185..1156825 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252582 NP_460039.1 CDS ymbA NC_003197.1 1156822 1157385 D outer membrane protein 1156822..1157385 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252583 NP_460040.1 CDS rmf NC_003197.1 1157641 1157808 D ribosome modulation factor 1157641..1157808 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252584 NP_460041.1 CDS fabA NC_003197.1 1157908 1158426 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(1157908..1158426) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252585 NP_460042.1 CDS lonH NC_003197.1 1158495 1160255 R protease complement(1158495..1160255) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252586 NP_460043.1 CDS ycbG NC_003197.1 1160441 1160893 D macrodomain Ter protein 1160441..1160893 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252587 NP_460044.1 CDS ompA NC_003197.1 1160965 1162017 R OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d; outer membrane protein A complement(1160965..1162017) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252588 NP_460045.1 CDS sulA NC_003197.1 1162374 1162883 R suppressor of lon (SW:SULA_SALTY); inhibitor of cell division and FtsZ ring formation upon DNA damage/inhibition; HslVU and Lon involved in its turnover; cell division inhibitor SulA complement(1162374..1162883) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252589 NP_460046.1 CDS yccR NC_003197.1 1163100 1163705 D DNA transformation protein 1163100..1163705 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252590 NP_460047.1 CDS yccS NC_003197.1 1163692 1165845 R efflux PET family; efflux family transporter complement(1163692..1165845) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252591 NP_460048.1 CDS yccF NC_003197.1 1165864 1166310 R inner membrane protein complement(1165864..1166310) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252592 NP_460049.1 CDS helD NC_003197.1 1166434 1168488 D catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 1166434..1168488 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252593 NP_460050.1 CDS mgsA NC_003197.1 1168524 1168982 R catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase complement(1168524..1168982) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252594 NP_460051.1 CDS STM1077 NC_003197.1 1169077 1169739 R hypothetical protein complement(1169077..1169739) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252595 NP_460052.1 CDS STM1078 NC_003197.1 1169910 1170326 D cytoplasmic protein 1169910..1170326 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252596 NP_460053.1 CDS yccV NC_003197.1 1170371 1170688 R heat shock protein HspQ complement(1170371..1170688) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252597 NP_460054.1 CDS STM1080 NC_003197.1 1170746 1171957 R rRNA large subunit methyltransferase RimI complement(1170746..1171957) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252598 NP_460055.1 CDS STM1081 NC_003197.1 1172172 1172720 D outer membrane protein 1172172..1172720 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252599 NP_460056.1 CDS STM1082 NC_003197.1 1172746 1173525 D AraC family regulatory protein 1172746..1173525 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252600 NP_460057.1 CDS yccX NC_003197.1 1173574 1173855 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 1173574..1173855 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252601 NP_460058.1 CDS yccK NC_003197.1 1173852 1174181 R transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs; sulfurtransferase TusE complement(1173852..1174181) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252602 NP_460059.1 CDS STM1085 NC_003197.1 1174268 1174927 R hypothetical protein complement(1174268..1174927) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252603 NP_460060.1 CDS pipA NC_003197.1 1175548 1176228 R pathogenicity island-encoded protein A complement(1175548..1176228) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252605 NP_460061.1 CDS pipB NC_003197.1 1176450 1177325 R secreted effector protein PipB; similar to STM2780; secreted by SPI-2; type III secretion; localizes to Salmonella-containing vacuole and host cell membranes; pathogenicity island-encoded protein B complement(1176450..1177325) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252606 NP_460062.1 CDS STM1089 NC_003197.1 1177543 1177863 D pathogenicity island-encoded protein 1177543..1177863 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252607 NP_460063.1 CDS sigE NC_003197.1 1177873 1178214 R chaperone protein SigE complement(1177873..1178214) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252608 NP_460064.1 CDS sopB NC_003197.1 1178231 1179916 R SigD; Salmonella outer protein B; similar to ipgD of Shigella; invasion gene D protein; secreted by SPI-1; type III secretion; inositol phosphate phosphatase SopB complement(1178231..1179916) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252609 NP_460065.1 CDS orfX NC_003197.1 1180248 1180418 D pathogenicity island-encoded protein 1180248..1180418 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252610 NP_460067.1 CDS pipD NC_003197.1 1180638 1182107 R pathogenicity island-encoded protein D; dipeptidase complement(1180638..1182107) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252612 YP_009000616.1 CDS copS NC_003197.1 1182280 1183644 R copper resistance histidine kinase complement(1182280..1183644) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252613 NP_460069.2 CDS copR NC_003197.1 1183637 1184317 R induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistance to copper and several drugs when induced; copper resistance transcriptional regulator complement(1183637..1184317) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252614 NP_460070.1 CDS STM1097 NC_003197.1 1184453 1184863 D 5-hydroxyisourate hydrolase 1184453..1184863 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252615 NP_460071.1 CDS hpaC NC_003197.1 1185196 1185708 R 4-hydroxyphenylacetate 3-monooxygenase reductase subunit complement(1185196..1185708) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252616 NP_460072.1 CDS hpaB NC_003197.1 1185726 1187288 R 4-hydroxyphenylacetate 3-monooxygenase oxygenase subunit complement(1185726..1187288) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252617 NP_460073.1 CDS hpaR NC_003197.1 1187506 1187946 R 4-hydroxyphenylacetate catabolism transcriptional regulator HpaR complement(1187506..1187946) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252618 NP_460074.1 CDS hpaG NC_003197.1 1188221 1189510 D 4-hydroxyphenylacetate catabolism protein HpaG 1188221..1189510 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252619 NP_460075.1 CDS hpaE NC_003197.1 1189507 1190973 D 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 1189507..1190973 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252620 NP_460076.1 CDS hpaD NC_003197.1 1190975 1191826 D 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1190975..1191826 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252621 NP_460077.1 CDS hpaF NC_003197.1 1191836 1192216 D 5-carboxymethyl-2-hydroxymuconate delta-isomerase 1191836..1192216 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252622 NP_460078.1 CDS hpaH NC_003197.1 1192359 1193162 D 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1192359..1193162 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252623 NP_460079.1 CDS hpaI NC_003197.1 1193173 1193964 D 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase 1193173..1193964 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252624 NP_460080.1 CDS hpaX NC_003197.1 1194036 1195412 D 4-hydroxyphenylacetate permease 1194036..1195412 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252625 NP_460081.1 CDS hpaA NC_003197.1 1195422 1196318 D 4-hydroxyphenylacetate catabolism transcriptional regulator HpaA 1195422..1196318 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252626 NP_460082.1 CDS STM1109 NC_003197.1 1196332 1197270 D periplasmic protein 1196332..1197270 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252627 NP_460083.1 CDS STM1110 NC_003197.1 1197678 1198040 R sigma S-regulator; RssC; anti-adapter protein IraM complement(1197678..1198040) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252628 NP_460084.1 CDS yccD NC_003197.1 1198694 1198999 R with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; chaperone-modulator protein CbpM complement(1198694..1198999) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252629 NP_460085.1 CDS cbpA NC_003197.1 1198999 1199919 R functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock; curved DNA-binding protein CbpA complement(1198999..1199919) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252630 NP_460086.1 CDS scsA NC_003197.1 1200154 1200516 D suppressor for copper-sensitivity A; copper binding protein; copper sensitive suppression protein A 1200154..1200516 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252631 NP_460087.1 CDS scsB NC_003197.1 1200565 1202451 D suppressor for copper-sensitivity B; suppression of copper sensitivity; copper sensitive suppression protein 1200565..1202451 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252632 NP_460088.1 CDS scsC NC_003197.1 1202448 1203071 D suppressor for copper-sensitivity C; suppression of copper sensitivity; copper sensitivity suppression protein 1202448..1203071 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252633 NP_460089.1 CDS scsD NC_003197.1 1203061 1203567 D suppressor for copper-sensitivity D; suppression of copper sensitivity; copper sensitive suppression protein 1203061..1203567 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252634 NP_460090.1 CDS agp NC_003197.1 1203700 1204941 D glucose-1-phosphatase/inositol phosphatase 1203700..1204941 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252635 NP_460091.1 CDS yccJ NC_003197.1 1204975 1205202 R cytoplasmic protein complement(1204975..1205202) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252636 NP_460092.1 CDS STM1119 NC_003197.1 1205223 1205819 R NAD(P)H dehydrogenase complement(1205223..1205819) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252637 NP_460093.1 CDS ymdF NC_003197.1 1206204 1206371 D cytoplasmic protein 1206204..1206371 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252639 NP_460094.1 CDS ycdC NC_003197.1 1206508 1207146 D transcriptional repressor 1206508..1207146 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252640 NP_460095.1 CDS STM1123 NC_003197.1 1207143 1207538 R periplasmic protein complement(1207143..1207538) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252641 NP_460097.1 CDS putP NC_003197.1 1211980 1213488 D sodium/proline symporter proline permease (SW:PUTP_SALTY); SSS family; sodium/proline symporter 1211980..1213488 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252643 YP_006892387.1 CDS STM05010 NC_003197.1 1214106 1214402 D hypothetical protein 1214106..1214402 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865711 YP_006892388.1 CDS STM1126 NC_003197.1 1214381 1215169 D riboflavin biosynthesis protein 1214381..1215169 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673763 NP_460099.1 CDS STM1127 NC_003197.1 1215275 1216156 R transcriptional regulator complement(1215275..1216156) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252645 NP_460100.1 CDS STM1128 NC_003197.1 1216441 1217937 R sodium/glucose cotransporter complement(1216441..1217937) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252646 NP_460101.1 CDS STM1129 NC_003197.1 1218274 1218954 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(1218274..1218954) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252647 NP_460102.1 CDS STM1130 NC_003197.1 1219460 1220620 D N-acetylneuraminate epimerase 1219460..1220620 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252648 NP_460103.1 CDS STM1131 NC_003197.1 1220666 1221358 D outer membrane protein 1220666..1221358 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252649 NP_460104.1 CDS STM1132 NC_003197.1 1221641 1222921 D sugar transporter 1221641..1222921 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252650 NP_460105.1 CDS STM1133 NC_003197.1 1222932 1224038 D dehydrogenase 1222932..1224038 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252651 YP_006892389.1 CDS STM05015 NC_003197.1 1224903 1225067 R hypothetical protein complement(1224903..1225067) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865727 NP_460106.1 CDS ycdW NC_003197.1 1225066 1226004 D glyoxylate/hydroxypyruvate reductase A 1225066..1226004 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252653 NP_460107.1 CDS ycdX NC_003197.1 1226088 1226825 D phosphatase 1226088..1226825 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252654 NP_460108.1 CDS ycdY NC_003197.1 1226849 1227403 D redox enzyme maturation protein 1226849..1227403 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252655 NP_460109.1 CDS ycdZ NC_003197.1 1227456 1227986 D hypothetical protein in phoH-csgG intergenic region (SW:YCDZ_SALTY); inner membrane protein 1227456..1227986 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252656 NP_460110.1 CDS csgG NC_003197.1 1228025 1228858 R curli production assembly/transport component CsgG (SW:CSGG_SALTY); curli production assembly/transport protein CsgG complement(1228025..1228858) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252657 NP_460111.1 CDS csgF NC_003197.1 1228885 1229301 R nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli production assembly/transport protein CsgF complement(1228885..1229301) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252658 NP_460112.1 CDS csgE NC_003197.1 1229328 1229723 R chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli production assembly/transport protein CsgE complement(1229328..1229723) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252659 NP_460113.1 CDS csgD NC_003197.1 1229728 1230378 R activates the csgBA and csgDEFG operons involved in biofilm formation; DNA-binding transcriptional regulator CsgD complement(1229728..1230378) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252660 NP_460114.1 CDS csgB NC_003197.1 1231133 1231588 D CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; minor curlin subunit 1231133..1231588 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252661 NP_460115.1 CDS csgA NC_003197.1 1231630 1232085 D major curlin subunit precursor; fimbrin SEF17 (SW:CSGA_SALTY); coiled surface structures; cryptic; major curlin subunit 1231630..1232085 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252662 NP_460116.1 CDS csgC NC_003197.1 1232147 1232473 D involved in autoagglutination of curliated cells; not involved in production of curli fibers; curli assembly protein CsgC 1232147..1232473 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252663 NP_460117.1 CDS STM1146 NC_003197.1 1232604 1232924 D hypothetical protein in csgC-mdoG intergenic region (SW:YMDA_SALTY); hypothetical protein 1232604..1232924 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252664 NP_460118.1 CDS STM1147 NC_003197.1 1233013 1233552 D O-acetyl-ADP-ribose deacetylase 1233013..1233552 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252665 NP_460119.2 CDS ymdC NC_003197.1 1233488 1234975 D phospholipase 1233488..1234975 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252666 NP_460120.1 CDS mdoC NC_003197.1 1234992 1236146 R required for the transfer of succinyl residues to the glucan backbone; glucans biosynthesis protein C complement(1234992..1236146) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252667 NP_460121.1 CDS mdoG NC_003197.1 1236418 1237953 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 1236418..1237953 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252668 NP_460122.1 CDS mdoH NC_003197.1 1237946 1240489 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; gucans biosynthesis glucosyltransferase H 1237946..1240489 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252669 NP_460123.1 CDS yceK NC_003197.1 1240563 1240790 D outer membrane lipoprotein 1240563..1240790 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252670 NP_460124.1 CDS msyB NC_003197.1 1240791 1241165 R secY/secA suppressor protein complement(1240791..1241165) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252671 NP_460125.1 CDS yceE NC_003197.1 1241247 1242461 R Confers resistance to fosfomycin and deoxycholate; drug efflux system protein MdtG complement(1241247..1242461) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252672 NP_460126.1 CDS htrB NC_003197.1 1242616 1243536 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(1242616..1243536) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252673 NP_460127.1 CDS STM1156 NC_003197.1 1243756 1244808 D hypothetical protein 1243756..1244808 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252674 NP_460128.1 CDS STM1157 NC_003197.1 1244860 1245435 R hypothetical protein complement(1244860..1245435) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252675 NP_460129.1 CDS STM1158 NC_003197.1 1245432 1246004 R inner membrane protein complement(1245432..1246004) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252676 NP_460130.1 CDS yceO NC_003197.1 1246267 1246380 R inner membrane protein complement(1246267..1246380) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252677 NP_460131.1 CDS solA NC_003197.1 1246421 1247539 R catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyl-L-tryptophan oxidase complement(1246421..1247539) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252678 NP_460132.3 CDS bssS NC_003197.1 1247652 1247906 R BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; biofilm formation regulatory protein BssS complement(1247652..1247906) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252679 NP_460133.1 CDS dinI NC_003197.1 1248196 1248441 R DNA damage-inducible protein I complement(1248196..1248441) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252680 NP_460134.1 CDS pyrC NC_003197.1 1248515 1249561 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1248515..1249561) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252681 NP_460135.1 CDS STM1164 NC_003197.1 1249666 1250226 R hypothetical protein in pyrC 3'region (SW:YCEB_SALTY); hypothetical protein complement(1249666..1250226) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252682 NP_460136.1 CDS grxB NC_003197.1 1250351 1250998 R cofactor involved in the reduction of disulfides; glutaredoxin complement(1250351..1250998) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252683 NP_460137.1 CDS yceL NC_003197.1 1251062 1252270 R Confers resistance to norfloxacin and enoxacin; multidrug resistance protein MdtH complement(1251062..1252270) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252684 NP_460138.1 CDS rimJ NC_003197.1 1252507 1253091 D acetylates N-terminal alanine of 30S ribosomal subunit protein S5; ribosomal-protein-S5-alanine N-acetyltransferase 1252507..1253091 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252685 NP_460139.1 CDS STM1168 NC_003197.1 1253127 1253774 D hypothetical protein 1253127..1253774 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252686 NP_460140.1 CDS STM1169 NC_003197.1 1253776 1254699 D oxidoreductase 1253776..1254699 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252687 NP_460141.1 CDS STM1170 NC_003197.1 1254964 1256538 D involved in murein biosynthesis; peptidoglycan lipid II flippase 1254964..1256538 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252688 NP_460142.1 CDS flgN NC_003197.1 1256619 1257041 R flagella synthesis protein FlgN (SW:FLGN_SALTY); FlgK/FlgL export chaperone complement(1256619..1257041) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252689 NP_460143.1 CDS flgM NC_003197.1 1257046 1257339 R regulates the flagellar specific sigma28 transcription factor; anti-sigma-28 factor FlgM complement(1257046..1257339) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252690 NP_460144.1 CDS flgA NC_003197.1 1257431 1258090 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring formation protein FlgA complement(1257431..1258090) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252691 NP_460145.1 CDS flgB NC_003197.1 1258247 1258663 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 1258247..1258663 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252692 NP_460146.1 CDS flgC NC_003197.1 1258667 1259071 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1258667..1259071 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252693 NP_460147.1 CDS flgD NC_003197.1 1259083 1259781 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein FlgD 1259083..1259781 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252694 NP_460148.1 CDS flgE NC_003197.1 1259808 1261019 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1259808..1261019 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252695 NP_460149.1 CDS flgF NC_003197.1 1261040 1261795 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1261040..1261795 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252696 NP_460150.1 CDS flgG NC_003197.1 1261809 1262591 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1261809..1262591 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252697 NP_460151.1 CDS flgH NC_003197.1 1262646 1263344 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein FlgH 1262646..1263344 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252698 NP_460152.1 CDS flgI NC_003197.1 1263356 1264453 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein FlgI 1263356..1264453 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252699 NP_460153.1 CDS flgJ NC_003197.1 1264453 1265403 D flagellar rod assembly protein; Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; peptidoglycan hydrolase FlgJ 1264453..1265403 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252700 NP_460154.1 CDS flgK NC_003197.1 1265468 1267129 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1265468..1267129 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252701 NP_460155.1 CDS flgL NC_003197.1 1267144 1268097 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes; flagellar hook-associated protein FlgL 1267144..1268097 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252702 NP_460156.1 CDS rne NC_003197.1 1268354 1271557 R bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase; ribonuclease E complement(1268354..1271557) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252703 YP_006892390.1 CDS STM05020 NC_003197.1 1271693 1271941 D hypothetical protein 1271693..1271941 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865729 NP_460157.1 CDS rluC NC_003197.1 1272131 1273090 D catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; rRNA lager subunit pseudouridylate synthase C 1272131..1273090 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252705 NP_460158.1 CDS STM1188 NC_003197.1 1273246 1273989 D inner membrane lipoprotein 1273246..1273989 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252706 YP_006892391.1 CDS STM05025 NC_003197.1 1274195 1274419 D hypothetical protein 1274195..1274419 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865704 NP_460159.1 CDS maf NC_003197.1 1274491 1275075 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(1274491..1275075) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252707 NP_460160.1 CDS STM1190 NC_003197.1 1275273 1275794 D hypothetical protein in rne-rpmF intergenic region (G30K) (SW:YCED_SALTY); hypothetical protein 1275273..1275794 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252708 NP_460161.1 CDS rpmF NC_003197.1 1275846 1276019 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1275846..1276019 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252709 NP_460162.1 CDS plsX NC_003197.1 1276153 1277232 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; phosphate acyltransferase 1276153..1277232 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252710 NP_460163.1 CDS fabH NC_003197.1 1277312 1278265 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1277312..1278265 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252711 NP_460164.1 CDS fabD NC_003197.1 1278281 1279210 D malonyl coA-acyl carrier protein transacylase (SW:FABD_SALTY); malonyl CoA-ACP transacylase 1278281..1279210 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252712 NP_460165.1 CDS fabG NC_003197.1 1279223 1279957 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-oxoacyl-ACP reductase FabG 1279223..1279957 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252713 NP_460166.1 CDS acpP NC_003197.1 1280113 1280349 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1280113..1280349 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252714 NP_460167.1 CDS fabF NC_003197.1 1280435 1281676 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1280435..1281676 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252715 NP_460168.1 CDS pabC NC_003197.1 1281800 1282609 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1281800..1282609 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252716 NP_460169.1 CDS yceG NC_003197.1 1282612 1283634 D septation protein 1282612..1283634 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252717 NP_460170.1 CDS tmk NC_003197.1 1283624 1284265 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1283624..1284265 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252718 NP_460171.1 CDS holB NC_003197.1 1284262 1285266 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1284262..1285266 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252719 NP_460172.1 CDS ycfH NC_003197.1 1285277 1286074 D metallodependent hydrolase 1285277..1286074 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252720 NP_460173.1 CDS ptsG NC_003197.1 1286369 1287802 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunit IIBC 1286369..1287802 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252721 NP_460174.1 CDS fhuE NC_003197.1 1287887 1290061 R ferric-rhodotorulic acid outer membrane transporter complement(1287887..1290061) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252722 NP_460175.1 CDS ycfF NC_003197.1 1290403 1290762 D purine nucleoside phosphoramidase 1290403..1290762 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252723 NP_460176.1 CDS ycfL NC_003197.1 1290765 1291139 D outer membrane lipoprotein 1290765..1291139 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252724 NP_460177.1 CDS lpoB NC_003197.1 1291153 1291791 D penicillin-binding protein activator LpoB 1291153..1291791 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252725 NP_460178.1 CDS thiK NC_003197.1 1291772 1292596 D catalyzes the phosphorylation of thiamine to thiamine phosphate; thiamine kinase 1291772..1292596 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252726 NP_460179.1 CDS nagZ NC_003197.1 1292607 1293632 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1292607..1293632 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252727 NP_460180.1 CDS STM1210 NC_003197.1 1293657 1294199 D hypothetical protein 1293657..1294199 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252728 NP_460181.1 CDS ndh NC_003197.1 1294454 1295758 D respiratory NADH dehydrogenase 2 1294454..1295758 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252729 NP_460182.1 CDS ycfJ NC_003197.1 1295937 1296476 D outer membrane lipoprotein 1295937..1296476 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252730 NP_460183.1 CDS ycfQ NC_003197.1 1296551 1297186 R TetR/AcrR family; transcriptional repressor complement(1296551..1297186) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252731 NP_460184.1 CDS ycfR NC_003197.1 1297428 1297685 D outer membrane protein 1297428..1297685 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252732 NP_460185.1 CDS ycfS NC_003197.1 1297782 1298747 R periplasmic protein complement(1297782..1298747) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252733 NP_460186.1 CDS mfd NC_003197.1 1298895 1302341 R transcription-repair coupling factor complement(1298895..1302341) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252734 NP_460187.2 CDS ycfU NC_003197.1 1302679 1303878 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 1302679..1303878 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252735 NP_460188.1 CDS lolD NC_003197.1 1303871 1304572 D outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone; lipoprotein-releasing system ATP-binding protein LolD 1303871..1304572 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252736 NP_460189.1 CDS STM1219 NC_003197.1 1304572 1305816 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolD 1304572..1305816 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252737 NP_460190.1 CDS ycfX NC_003197.1 1305845 1306756 D catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 1305845..1306756 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252738 NP_460191.1 CDS cobB NC_003197.1 1306775 1307596 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1306775..1307596 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252739 NP_460192.1 CDS potD NC_003197.1 1307678 1308724 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; spermidine/putrescine ABC transporter substrate-binding protein PotD complement(1307678..1308724) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252740 NP_460193.1 CDS potC NC_003197.1 1308749 1309528 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter permease PotC complement(1308749..1309528) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252741 NP_460194.1 CDS sifA NC_003197.1 1309844 1310854 R translocated by the type III secretion system SPI-2; required for the formation of lysosomal glycoprotein structures (Sifs); required for maintenance of membrane in the Salmonella-containing vacuole; a cysteine residue with CAAX motif is modified by isoprenoid addition of protein geranylgeranyl transferase I; also modified by S-acylation; secreted effector protein SifA complement(1309844..1310854) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252742 NP_460195.1 CDS potB NC_003197.1 1311183 1312046 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter membrane protein PotB complement(1311183..1312046) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252743 NP_460196.1 CDS potA NC_003197.1 1312030 1313166 R functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATP-binding protein PotA complement(1312030..1313166) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252744 NP_460197.1 CDS pepT NC_003197.1 1313417 1314646 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1313417..1314646 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252745 NP_460198.1 CDS STM1228 NC_003197.1 1314650 1315984 D periplasmic protein 1314650..1315984 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252746 NP_460199.1 CDS ycfD NC_003197.1 1316024 1317145 R cytoplasmic protein complement(1316024..1317145) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252747 NP_460200.1 CDS phoQ NC_003197.1 1317226 1318689 R virulence sensor protein PhoQ (SW:PHOQ_SALTY); in two-component regulatory system with PhoP; ligand is Mg+; virulence sensor histidine kinase PhoQ complement(1317226..1318689) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252748 NP_460201.1 CDS phoP NC_003197.1 1318689 1319363 R response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; virulence transcriptional regulator PhoP complement(1318689..1319363) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252749 NP_460202.1 CDS purB NC_003197.1 1319487 1320857 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1319487..1320857) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252750 NP_460203.1 CDS hflD NC_003197.1 1320861 1321508 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; high frequency lysogenization protein HflD complement(1320861..1321508) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252751 NP_460204.2 CDS mnmA NC_003197.1 1321589 1322695 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1321589..1322695) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252752 NP_460205.1 CDS ymfB NC_003197.1 1322749 1323210 R phosphatase NudJ complement(1322749..1323210) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252753 NP_460206.1 CDS STM1236 NC_003197.1 1323222 1323551 R periplasmic protein complement(1323222..1323551) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252754 NP_460207.1 CDS ymfC NC_003197.1 1323548 1324213 R rRNA large subunit pseudouridine synthase E complement(1323548..1324213) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252755 NP_460208.1 CDS icdA NC_003197.1 1324385 1325635 D Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1324385..1325635 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252756 NP_460209.1 CDS STM1239 NC_003197.1 1326083 1327207 D cytoplasmic protein 1326083..1327207 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252757 YP_006892392.1 CDS STM05040 NC_003197.1 1327664 1327867 R hypothetical protein complement(1327664..1327867) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865706 NP_460210.1 CDS envF NC_003197.1 1328189 1328977 R probable lipoprotein EnvF (SW:ENVF_SALTY); lipoprotein EnvF complement(1328189..1328977) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252758 NP_460211.1 CDS msgA NC_003197.1 1329466 1329705 R macrophage survival protein; reduced mouse virulence; virulence protein MsgA complement(1329466..1329705) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252759 NP_460212.1 CDS envE NC_003197.1 1329896 1330417 R probable lipoprotein EnvE (SW:ENVE_SALTY); lipoprotein EnvE complement(1329896..1330417) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252760 NP_460213.1 CDS STM1243 NC_003197.1 1330832 1331044 R cold shock-like protein CspH (SW:CSPH_SALTY); cold shock-like protein CspH complement(1330832..1331044) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252761 NP_460214.1 CDS pagD NC_003197.1 1331176 1331439 R (SW:PAGD_SALTY); PhoP regulated protein; virulence protein PagD complement(1331176..1331439) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252762 NP_460215.1 CDS pagC NC_003197.1 1332251 1332808 D (SW:PAGC_SALTY); PhoP regulated; reduced macrophage survival; virulence membrane protein PagC 1332251..1332808 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252764 NP_460216.1 CDS pliC NC_003197.1 1334045 1334389 R PliC; periplasmic lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor complement(1334045..1334389) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252767 NP_460217.1 CDS STM1250 NC_003197.1 1335092 1335364 D cytoplasmic protein 1335092..1335364 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252768 NP_460218.1 CDS STM1251 NC_003197.1 1335516 1335983 D molecular chaperone 1335516..1335983 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252769 NP_460219.1 CDS STM1252 NC_003197.1 1336322 1337365 D cytoplasmic protein 1336322..1337365 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252770 NP_460220.1 CDS STM1253 NC_003197.1 1337448 1337978 R cytochrome b561 complement(1337448..1337978) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252771 NP_460221.1 CDS STM1254 NC_003197.1 1338127 1338441 R outer membrane lipoprotein complement(1338127..1338441) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252772 NP_460222.1 CDS STM1255 NC_003197.1 1339123 1340757 D substrate-binding protein; ABC transporter substrate-binding protein 1339123..1340757 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252773 NP_460223.1 CDS STM1256 NC_003197.1 1340757 1341731 D transmembrane protein; ABC transporter permease 1340757..1341731 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252774 NP_460224.1 CDS STM1257 NC_003197.1 1341721 1342533 D transmembrane protein; ABC transporter permease 1341721..1342533 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252775 NP_460225.1 CDS STM1258 NC_003197.1 1342527 1343324 D ATPase; contain duplicated ATPase domain; ABC transporter ATP-binding protein 1342527..1343324 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252776 NP_460226.1 CDS STM1259 NC_003197.1 1343318 1343908 D ATPase; contains duplicated ATPase domain; ABC transporter ATP-binding protein 1343318..1343908 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252777 NP_460227.1 CDS STM1260 NC_003197.1 1343990 1345123 R inner membrane protein complement(1343990..1345123) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252778 NP_460228.1 CDS STM1261 NC_003197.1 1345317 1345643 D cytoplasmic protein 1345317..1345643 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252779 NP_460229.2 CDS STM1263 NC_003197.1 1345837 1346487 D periplasmic protein 1345837..1346487 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252781 NP_460230.1 CDS aadA NC_003197.1 1346596 1347384 D streptomycin 3'-adenyltransferase; aminoglycoside adenyltransferase 1346596..1347384 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252782 NP_460231.1 CDS STM1265 NC_003197.1 1347529 1348122 D contains CheY-like receiver domain and HTH DNA-binding domain; response regulator 1347529..1348122 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252783 NP_460232.1 CDS STM1266 NC_003197.1 1348191 1349039 D transcriptional regulator 1348191..1349039 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252784 NP_460233.1 CDS STM1267 NC_003197.1 1349294 1349542 R cytoplasmic protein complement(1349294..1349542) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252785 NP_460234.1 CDS STM1268 NC_003197.1 1349621 1349770 R cytoplasmic protein complement(1349621..1349770) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252786 NP_460235.1 CDS STM1269 NC_003197.1 1349853 1350398 D catalyzes the interconversion of chorismate to prephenate; chorismate mutase 1349853..1350398 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252787 NP_460236.1 CDS yeaS NC_003197.1 1350595 1351233 D leucine efflux protein 1350595..1351233 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252788 NP_460237.1 CDS yeaR NC_003197.1 1351406 1351768 D cytoplasmic protein 1351406..1351768 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252789 NP_460238.1 CDS yoaG NC_003197.1 1351771 1351953 D cytoplasmic protein 1351771..1351953 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252790 NP_460239.1 CDS STM1273 NC_003197.1 1352183 1352824 D nitric oxide reductase 1352183..1352824 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252791 NP_951050.1 CDS STM1273.1n NC_003197.1 1352946 1353131 D hypothetical protein 1352946..1353131 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673764 NP_460240.1 CDS yeaQ NC_003197.1 1353139 1353387 D inner membrane protein 1353139..1353387 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252792 NP_460241.1 CDS yaoF NC_003197.1 1353820 1354071 D hemolysin 1353820..1354071 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252793 NP_460242.1 CDS STM1276 NC_003197.1 1354140 1354451 D periplasmic protein 1354140..1354451 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252794 NP_460243.1 CDS yeaO NC_003197.1 1354437 1354784 R cytoplasmic protein complement(1354437..1354784) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252795 NP_460244.1 CDS yeaN NC_003197.1 1354903 1356087 R MFS family transport protein complement(1354903..1356087) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252796 NP_460245.1 CDS yeaM NC_003197.1 1356188 1356982 D AraC/XylS family regulator 1356188..1356982 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252797 NP_460246.1 CDS yeaL NC_003197.1 1357003 1357407 R membrane protein complement(1357003..1357407) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252798 NP_460247.1 CDS STM1281 NC_003197.1 1357613 1357720 D hypothetical protein 1357613..1357720 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252799 NP_460248.1 CDS yeaK NC_003197.1 1357717 1358235 R cytoplasmic protein complement(1357717..1358235) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252800 NP_460249.1 CDS yeaJ NC_003197.1 1358285 1359778 R contains diguanylate cyclase/phosphodiesterase domain 1; methyl-accepting chemotaxis protein complement(1358285..1359778) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252801 NP_460250.1 CDS STM1284 NC_003197.1 1360419 1361705 R hypothetical protein complement(1360419..1361705) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252802 NP_460251.1 CDS yeaG NC_003197.1 1361828 1363762 R serine protein kinase complement(1361828..1363762) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252803 NP_460252.1 CDS mipA NC_003197.1 1364189 1364935 D scaffolding protein for murein-synthesizing holoenzyme; murein-synthesizing holoenzymescaffolding protein 1364189..1364935 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252804 NP_460253.1 CDS STM1287 NC_003197.1 1365225 1366421 D arylsulfatase regulator 1365225..1366421 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252805 NP_460254.1 CDS STM1288 NC_003197.1 1366518 1367375 D aldehyde reductase 1366518..1367375 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252806 NP_460255.1 CDS yeaD NC_003197.1 1367474 1368358 R aldose 1-epimerase-like protein complement(1367474..1368358) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252807 NP_460256.1 CDS gapA NC_003197.1 1368693 1369688 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase complement(1368693..1369688) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252808 NP_460257.1 CDS yeaA NC_003197.1 1370000 1370443 D this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; peptide methionine sulfoxide reductase MsrB 1370000..1370443 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252809 NP_460258.1 CDS yeaC NC_003197.1 1370485 1370763 D cytoplasmic protein 1370485..1370763 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252810 NP_460259.1 CDS pncA NC_003197.1 1371115 1371771 R catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; nicotinamidase/pyrazinamidase complement(1371115..1371771) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252811 NP_460260.1 CDS ansA NC_003197.1 1371798 1372814 R converts asparagine to aspartate and ammonia; asparaginase complement(1371798..1372814) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252812 NP_460261.1 CDS sppA NC_003197.1 1372910 1374766 R SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; protease 4 complement(1372910..1374766) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252813 NP_460262.1 CDS ydjA NC_003197.1 1374940 1375491 D oxidoreductase 1374940..1375491 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252814 NP_460263.1 CDS selD NC_003197.1 1375609 1376652 D catalyzes the formation of selenophosphate from selenide and ATP; selenide, water dikinase 1375609..1376652 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252815 NP_460264.1 CDS topB NC_003197.1 1376657 1378606 D decatenates replicating daughter chromosomes; DNA topoisomerase III 1376657..1378606 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252816 NP_460265.1 CDS gdhA NC_003197.1 1378636 1379979 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(1378636..1379979) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252817 NP_460266.1 CDS STM1300 NC_003197.1 1380218 1380493 D periplasmic protein 1380218..1380493 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252818 NP_460267.1 CDS STM1301 NC_003197.1 1380453 1380869 R Nudix hydrolase complement(1380453..1380869) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252819 NP_460268.1 CDS xthA NC_003197.1 1380942 1381748 R removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III complement(1380942..1381748) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252820 NP_460269.1 CDS argD NC_003197.1 1382194 1383420 D catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate; bifunctional succinylornithine transaminase/acetylornithine transaminase 1382194..1383420 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252821 NP_460270.1 CDS astA NC_003197.1 1383411 1384445 D arginine succinyltransferase 1383411..1384445 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252822 NP_460271.1 CDS astD NC_003197.1 1384442 1385920 D a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; N-succinylglutamate 5-semialdehyde dehydrogenase 1384442..1385920 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252823 NP_460272.1 CDS astB NC_003197.1 1385917 1387260 D catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 1385917..1387260 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252824 NP_460273.1 CDS astE NC_003197.1 1387253 1388221 D catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1387253..1388221 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252825 NP_460274.1 CDS spy NC_003197.1 1388557 1389042 D periplasmic protein induced by stress response via Cpx and BaeSR system; stress response protein 1388557..1389042 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252826 NP_460275.1 CDS STM1309 NC_003197.1 1389117 1390025 R 3' incision activity; acts with UvrC; excinuclease complement(1389117..1390025) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252827 NP_460276.1 CDS nadE NC_003197.1 1390119 1390946 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NH(3)-dependent NAD synthetase complement(1390119..1390946) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252828 NP_460277.1 CDS STM1311 NC_003197.1 1391165 1391506 D osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator 1391165..1391506 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252829 NP_460278.1 CDS celA NC_003197.1 1391807 1392127 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB 1391807..1392127 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252830 NP_460279.1 CDS celB NC_003197.1 1392210 1393568 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC 1392210..1393568 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252831 NP_460280.1 CDS celC NC_003197.1 1393619 1393966 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA 1393619..1393966 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252832 NP_460281.1 CDS celD NC_003197.1 1393977 1394819 D represses the celABCDF-ydjC operon involved in carbon uptake; cel operon transcriptional repressor 1393977..1394819 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252833 NP_460282.1 CDS celF NC_003197.1 1394944 1396299 D phospho-beta-glucosidase 1394944..1396299 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252834 NP_460283.1 CDS STM1317 NC_003197.1 1396312 1397070 D hypothetical protein 1396312..1397070 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252835 NP_460284.1 CDS katE NC_003197.1 1397114 1399366 R Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; catalase complement(1397114..1399366) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252836 NP_460285.1 CDS cedA NC_003197.1 1399731 1399973 D affects inhibition after overreplication of chromosome in dnaAcos mutants; cell division activator CedA 1399731..1399973 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252837 NP_460286.1 CDS ydjN NC_003197.1 1400075 1401466 R kinase-like protein complement(1400075..1401466) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252838 NP_460287.2 CDS ydjM NC_003197.1 1401603 1402190 R LexA-regulated gene; LexA-regulated protein complement(1401603..1402190) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252839 NP_460288.1 CDS yniC NC_003197.1 1402340 1403008 R YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase complement(1402340..1403008) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252840 NP_460289.1 CDS yniB NC_003197.1 1403157 1403693 D regulatory protein 1403157..1403693 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252841 NP_460290.1 CDS STM1324 NC_003197.1 1403736 1404596 R cytoplasmic protein complement(1403736..1404596) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252842 NP_460291.1 CDS ydiZ NC_003197.1 1404703 1404993 R cytoplasmic protein complement(1404703..1404993) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252843 NP_460292.1 CDS pfkB NC_003197.1 1405090 1406022 R 6-phosphofructokinase complement(1405090..1406022) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252844 NP_460293.1 CDS ydiY NC_003197.1 1406311 1407069 D salt-inducible; outer membrane protein 1406311..1407069 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252845 NP_460294.1 CDS STM1328 NC_003197.1 1407118 1408077 R outer membrane protein complement(1407118..1408077) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252846 NP_460295.1 CDS STM1329 NC_003197.1 1408220 1408534 D inner membrane protein 1408220..1408534 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252847 NP_460296.1 CDS STM1330 NC_003197.1 1408531 1409385 D DNA/RNA non-specific endonuclease 1408531..1409385 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252848 NP_460298.1 CDS rfc NC_003197.1 1410087 1411310 R O-antigen polymerase (SW:RFC_SALTY); O-antigen polymerase complement(1410087..1411310) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252850 NP_460299.1 CDS thrS NC_003197.1 1412202 1414130 D catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonine--tRNA ligase 1412202..1414130 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252851 NP_460300.2 CDS infC NC_003197.1 1414134 1414676 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1414134..1414676 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252852 NP_460301.1 CDS rpmI NC_003197.1 1414772 1414969 D 50S ribosomal protein L35 1414772..1414969 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252853 NP_460302.1 CDS rplT NC_003197.1 1415020 1415376 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1415020..1415376 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252854 NP_460303.1 CDS pheS NC_003197.1 1415678 1416661 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanine--tRNA ligase subunit alpha 1415678..1416661 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252855 NP_460304.1 CDS pheT NC_003197.1 1416677 1419064 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanine--tRNA ligase subunit beta 1416677..1419064 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252856 NP_460305.1 CDS ihfA NC_003197.1 1419069 1419368 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 1419069..1419368 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252857 NP_460306.1 CDS btuC NC_003197.1 1419571 1420551 D with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12 import system permease BtuC 1419571..1420551 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252858 NP_460307.1 CDS btuE NC_003197.1 1420643 1421194 D glutathione peroxidase 1420643..1421194 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252859 NP_460308.1 CDS btuD NC_003197.1 1421194 1421943 D ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12 import system ATP-binding protein BtuD 1421194..1421943 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252860 NP_460309.1 CDS nlpC NC_003197.1 1422020 1422484 D lipoprotein 1422020..1422484 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252861 NP_460310.1 CDS ydiV NC_003197.1 1422798 1423511 D diguanylate cyclase/phosphodiesterase domain 1; anti-FlhC(2)FlhD(4) factor 1422798..1423511 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252862 NP_460311.1 CDS STM1345 NC_003197.1 1423573 1425015 D hypothetical protein 1423573..1425015 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252863 NP_460312.1 CDS ydiE NC_003197.1 1425050 1425241 R cytoplasmic protein complement(1425050..1425241) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252864 NP_460313.1 CDS aroH NC_003197.1 1425398 1426444 R tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1425398..1426444) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252865 NP_460314.1 CDS ydiA NC_003197.1 1426600 1427433 R phosphoenolpyruvate synthase regulatory protein complement(1426600..1427433) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252866 NP_460315.1 CDS pps NC_003197.1 1427770 1430148 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1427770..1430148 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252867 NP_460316.1 CDS ydiD NC_003197.1 1430189 1431829 R acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids; short chain acyl-CoA synthetase complement(1430189..1431829) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252868 NP_460317.1 CDS ydiT NC_003197.1 1431919 1432212 R ferredoxin complement(1431919..1432212) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252869 NP_460318.1 CDS ydiS NC_003197.1 1432209 1433495 R oxidoreductase complement(1432209..1433495) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252870 NP_460319.1 CDS ydiR NC_003197.1 1433552 1434487 R May play a role in a redox process; electron transfer flavoprotein complement(1433552..1434487) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252871 NP_460320.1 CDS ydiQ NC_003197.1 1434509 1435273 R YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; electron transfer flavoprotein complement(1434509..1435273) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252872 NP_460321.1 CDS ydiP NC_003197.1 1435737 1436627 D AraC family transcription regulator 1435737..1436627 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252873 NP_460322.1 CDS ydiO NC_003197.1 1436703 1437854 R may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; acyl-CoA dehydrogenase complement(1436703..1437854) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252874 NP_460323.2 CDS ydiF NC_003197.1 1437868 1439463 R acetyl-CoA/acetoacetyl-CoA transferase subunit beta complement(1437868..1439463) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252875 NP_460324.1 CDS aroD NC_003197.1 1439617 1440375 R catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase complement(1439617..1440375) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252876 NP_460325.1 CDS aroE NC_003197.1 1440420 1441286 R YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate; quinate/shikimate dehydrogenase complement(1440420..1441286) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252877 NP_460326.1 CDS ydiN NC_003197.1 1441353 1442588 R MFS family transport protein complement(1441353..1442588) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252878 NP_460327.1 CDS ydiM NC_003197.1 1442952 1444163 R MFS family transport protein complement(1442952..1444163) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252879 NP_460328.1 CDS ydiL NC_003197.1 1444304 1444663 R cytoplasmic protein complement(1444304..1444663) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252880 NP_460329.1 CDS ydiK NC_003197.1 1445121 1446239 R YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; inner membrane protein complement(1445121..1446239) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252882 NP_460330.1 CDS ydiJ NC_003197.1 1446504 1449560 D oxidase 1446504..1449560 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252883 NP_460331.1 CDS STM1366 NC_003197.1 1449557 1449967 D possibly involved in aromatic compounds catabolism; PaaI; hypothetical protein 1449557..1449967 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252884 NP_460332.1 CDS ydiH NC_003197.1 1450027 1450254 D cytoplasmic protein 1450027..1450254 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252885 NP_460333.1 CDS STM1368 NC_003197.1 1450542 1451888 R Na+-dicarboxylate symporter complement(1450542..1451888) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252886 NP_460334.1 CDS sufA NC_003197.1 1452315 1452683 D functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; iron-sulfur cluster assembly scaffold protein 1452315..1452683 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252887 NP_460335.1 CDS sufB NC_003197.1 1452692 1454179 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 1452692..1454179 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252888 NP_460336.1 CDS sufC NC_003197.1 1454196 1454942 D part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase activator complex subunit ATPase SufC 1454196..1454942 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252889 NP_460337.1 CDS sufD NC_003197.1 1454917 1456188 D with SufBC activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufD 1454917..1456188 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252890 NP_460338.1 CDS sufS NC_003197.1 1456185 1457405 D catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine; bifunctional cysteine desulfurase/selenocysteine lyase 1456185..1457405 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252891 NP_460339.1 CDS ynhA NC_003197.1 1457418 1457834 D Acts with SufS to catalyze the formation of L-alanine from L-cysteine; cysteine desufuration protein SufE 1457418..1457834 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252892 NP_460340.1 CDS ynhG NC_003197.1 1457989 1458990 D murein L,D-transpeptidase 1457989..1458990 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252893 NP_460341.1 CDS lppB NC_003197.1 1459057 1459296 R major outer membrane lipoprotein complement(1459057..1459296) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252894 NP_460342.1 CDS lpp NC_003197.1 1459379 1459615 R major outer membrane lipoprotein complement(1459379..1459615) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252895 NP_460343.1 CDS pykF NC_003197.1 1459926 1461338 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(1459926..1461338) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252896 NP_460344.1 CDS STM1379 NC_003197.1 1461740 1463083 R amino acid permease complement(1461740..1463083) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252897 NP_460345.1 CDS STM1380 NC_003197.1 1463105 1463998 R hydrolase or acyltransferase; hydrolase/acyltransferase complement(1463105..1463998) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252898 NP_460346.1 CDS STM1381 NC_003197.1 1464057 1464794 R cytoplasmic protein complement(1464057..1464794) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252899 NP_460347.1 CDS STM1382 NC_003197.1 1464806 1466032 R DeoR family regulatory protein complement(1464806..1466032) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252900 NP_460348.1 CDS ttrA NC_003197.1 1466355 1469417 R tetrathionate reductase subunit A; TtrA; tetrathionate reductase subunit A complement(1466355..1469417) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252901 NP_460349.1 CDS ttrC NC_003197.1 1469410 1470432 R tetrathionate reductase subunit C; TtrC; tetrathionate reductase subunit C complement(1469410..1470432) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252902 NP_460350.1 CDS ttrB NC_003197.1 1470433 1471185 R tetrathionate reductase subunit B; TtrB; tetrathionate reductase subunit B complement(1470433..1471185) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252903 NP_460351.1 CDS ttrS NC_003197.1 1471349 1473127 D tetrathionate reductase complex; TtrS; two-component regulatory system; tetrathionate sensor histidine kinase TtrS 1471349..1473127 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252904 NP_460352.2 CDS ttrR NC_003197.1 1473084 1473722 D tetrathionate reductase complex; TtrR; two-component regulatory system; tetrathionate response regulator TtrR 1473084..1473722 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252905 NP_460353.1 CDS STM1388 NC_003197.1 1473820 1474032 D hypothetical 7.9 kDa protein in ssrB-ttRr intergenic region (ORF70) (SW:YDHZ_SALTY); hypothetical protein 1473820..1474032 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252906 NP_460354.1 CDS STM1389 NC_003197.1 1474128 1475087 R inner membrane protein complement(1474128..1475087) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252907 NP_460355.1 CDS STM1390 NC_003197.1 1475260 1475988 R MerR family regulatory protein complement(1475260..1475988) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252908 NP_460356.1 CDS ssrB NC_003197.1 1476167 1476805 R secretion system transcriptonal activator SsrB complement(1476167..1476805) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252909 NP_460357.1 CDS ssrA NC_003197.1 1476836 1479598 R SpiR; type III secretion system regulator; regulated by OmpR-EnvZ; secretion system sensor kinase SsrA complement(1476836..1479598) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252910 NP_460358.1 CDS ssaB NC_003197.1 1479999 1480400 D SpiC; effects secretion of other SPI-2 proteins; interacts with host cell TassC and Hook3 proteins; type III secretion; prevents fusion of endosome/lysosome with Salmonella-containing vacuoles; secretion system apparatus protein SsaB 1479999..1480400 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252911 NP_460359.1 CDS ssaC NC_003197.1 1480402 1481895 D SpiA; type III secretion system apparatus; secretion system apparatus outer membrane protein SsaC 1480402..1481895 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252912 NP_460360.1 CDS ssaD NC_003197.1 1481876 1483087 D SpiB; type III secretion system; secretion system apparatus protein SsaD 1481876..1483087 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252913 NP_460361.1 CDS ssaE NC_003197.1 1483095 1483337 D secretory apparatus component; secretion system effector SsaE 1483095..1483337 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252914 NP_460362.1 CDS sseA NC_003197.1 1483601 1483927 D Salmonella typhimurium SseA; chaperones SseB/D; secretion system chaperone SseA 1483601..1483927 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252915 NP_460363.1 CDS sseB NC_003197.1 1483934 1484524 D secreted protein; secreted effector protein SseB 1483934..1484524 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252916 NP_460364.1 CDS sscA NC_003197.1 1484521 1484994 D secretion chaperone; secretion system chaperone SscA 1484521..1484994 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252917 NP_460365.1 CDS sseC NC_003197.1 1484997 1486451 D SseC; secreted effector protein SseC 1484997..1486451 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252918 NP_460366.1 CDS sseD NC_003197.1 1486467 1487054 D SseD; translocation machinery protein SseD 1486467..1487054 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252919 NP_460367.1 CDS sseE NC_003197.1 1487057 1487473 D SseE; secretion system effector SseE 1487057..1487473 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252920 NP_460368.1 CDS sscB NC_003197.1 1487525 1487959 D SscB; secretion system chaperone SscB 1487525..1487959 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252921 NP_460369.1 CDS sseF NC_003197.1 1487975 1488757 D SseF; secretion system effector SseF 1487975..1488757 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252922 NP_460370.1 CDS sseG NC_003197.1 1488754 1489443 D SseG; secretion system effector SseG 1488754..1489443 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252923 NP_460371.1 CDS ssaG NC_003197.1 1489537 1489752 D SsaH; secretion system apparatus protein SsaG 1489537..1489752 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252924 NP_460372.1 CDS ssaH NC_003197.1 1489793 1490020 D SsaH; secretion system apparatus protein SsaH 1489793..1490020 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252925 NP_460373.1 CDS ssaI NC_003197.1 1490032 1490280 D SsaI; secretion system apparatus protein SsaI 1490032..1490280 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252926 NP_460374.1 CDS ssaJ NC_003197.1 1490277 1491026 D member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus lipoprotein SsaJ 1490277..1491026 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252927 NP_460375.1 CDS STM1410 NC_003197.1 1491044 1491592 D cytoplasmic protein 1491044..1491592 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252928 NP_460376.1 CDS ssaK NC_003197.1 1491589 1492263 D member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaK 1491589..1492263 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252929 NP_460377.1 CDS ssaL NC_003197.1 1492229 1493245 D member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaL 1492229..1493245 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252930 NP_460378.1 CDS ssaM NC_003197.1 1493303 1493671 D member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaM 1493303..1493671 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252931 NP_460379.1 CDS ssaV NC_003197.1 1493656 1495701 D with SsaC forms part of a protein export system across the inner and outer cell membranes; member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaV 1493656..1495701 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252932 NP_460380.1 CDS ssaN NC_003197.1 1495691 1496992 D member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus ATP synthase SsaN 1495691..1496992 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252933 NP_460381.1 CDS ssaO NC_003197.1 1496995 1497372 D member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaO 1496995..1497372 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252934 NP_460382.1 CDS ssaP NC_003197.1 1497353 1497727 D member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaP 1497353..1497727 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252935 NP_460383.1 CDS ssaQ NC_003197.1 1497708 1498676 D member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaQ 1497708..1498676 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252936 NP_460384.1 CDS ssaR NC_003197.1 1498744 1499391 D member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaR 1498744..1499391 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252937 NP_460385.1 CDS ssaS NC_003197.1 1499388 1499654 D member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaS 1499388..1499654 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252938 NP_460386.1 CDS ssaT NC_003197.1 1499655 1500434 D member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaT 1499655..1500434 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252939 NP_460387.1 CDS ssaU NC_003197.1 1500431 1501489 D member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli involved in the infection of eukaryotic cells; gene expression shown in other strains of S. typhimurium PMID:9140973; secretion system apparatus protein SsaU 1500431..1501489 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252940 NP_460388.1 CDS mdtK NC_003197.1 1501962 1503335 R NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug resistance protein MdtK complement(1501962..1503335) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252943 NP_460389.1 CDS ribE NC_003197.1 1503552 1504193 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1503552..1504193 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252944 NP_460390.1 CDS cfa NC_003197.1 1504235 1505383 R catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase complement(1504235..1505383) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252945 NP_460391.1 CDS ydhC NC_003197.1 1505673 1506878 R uncharacterized member of the major facilitator superfamily (MFS); MFS family transport protein complement(1505673..1506878) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252946 NP_460392.1 CDS ydhB NC_003197.1 1506991 1507923 D LysR family transcriptional regulator 1506991..1507923 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252947 NP_460393.1 CDS purR NC_003197.1 1507920 1508945 R binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; HTH-type transcriptional repressor PurR complement(1507920..1508945) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252948 NP_460394.1 CDS sodB NC_003197.1 1509413 1509994 R SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; superoxide dismutase complement(1509413..1509994) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252949 NP_460395.1 CDS ydhO NC_003197.1 1510121 1510975 R cell wall-associated hydrolase complement(1510121..1510975) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252950 NP_460396.1 CDS ydhD NC_003197.1 1511277 1511624 D glutaredoxin 1511277..1511624 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252951 NP_460397.1 CDS rnt NC_003197.1 1511702 1512349 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(1511702..1512349) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252952 NP_460398.1 CDS gloA NC_003197.1 1512450 1512857 R Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; lactoylglutathione lyase complement(1512450..1512857) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252953 NP_460399.1 CDS nemA NC_003197.1 1512926 1514023 R FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase complement(1512926..1514023) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252954 NP_460400.1 CDS ydhM NC_003197.1 1514082 1514681 R TetR/AcrR family; TetR/AcrR family transcriptional repressor complement(1514082..1514681) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252955 NP_460401.1 CDS ydhL NC_003197.1 1514784 1515023 D oxidoreductase 1514784..1515023 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252956 NP_460402.1 CDS ydhF NC_003197.1 1515074 1515970 D aldo/keto reductase 1515074..1515970 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252957 NP_460403.1 CDS sodC NC_003197.1 1516050 1516571 D SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; superoxide dismutase 1516050..1516571 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252958 NP_460404.1 CDS STM1441 NC_003197.1 1516547 1518586 R transporter complement(1516547..1518586) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252959 NP_460405.1 CDS ydhJ NC_003197.1 1518586 1519482 R multidrug resistance efflux pump complement(1518586..1519482) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252960 NP_460406.1 CDS ydhI NC_003197.1 1519449 1519685 R inner membrane protein complement(1519449..1519685) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252961 NP_460407.2 CDS slyA NC_003197.1 1519886 1520320 D Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 1519886..1520320 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252962 NP_460408.1 CDS slyB NC_003197.1 1520368 1520835 R outer membrane lipoprotein SlyB (SW:SLYB_SALTY); outer membrane lipoprotein SlyB complement(1520368..1520835) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252963 NP_460409.1 CDS anmK NC_003197.1 1521107 1522228 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 1521107..1522228 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252964 NP_460410.1 CDS mliC NC_003197.1 1522316 1522645 D MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1522316..1522645 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252965 NP_460411.1 CDS pdxH NC_003197.1 1522704 1523360 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1522704..1523360 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252966 NP_460412.1 CDS tyrS NC_003197.1 1523487 1524761 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosine--tRNA ligase 1523487..1524761 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252967 NP_460413.1 CDS pdxY NC_003197.1 1524821 1525681 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1524821..1525681 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252968 NP_460414.1 CDS gst NC_003197.1 1525740 1526345 R glutathionine S-transferase complement(1525740..1526345) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252969 NP_460415.1 CDS tppB NC_003197.1 1526450 1527955 R mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; dipeptide/tripeptide transporter permease A complement(1526450..1527955) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252970 NP_460416.1 CDS nth NC_003197.1 1528557 1529192 R DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines; endonuclease III complement(1528557..1529192) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252971 NP_460417.1 CDS rsxE NC_003197.1 1529192 1529884 R in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE complement(1529192..1529884) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252972 NP_460418.1 CDS rsxG NC_003197.1 1529887 1530507 R part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RsxG complement(1529887..1530507) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252973 NP_460419.1 CDS rsxD NC_003197.1 1530511 1531569 R RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RsxD complement(1530511..1531569) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252974 NP_460420.1 CDS rsxC NC_003197.1 1531570 1533777 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RsxC complement(1531570..1533777) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252975 NP_460421.1 CDS rsxB NC_003197.1 1533770 1534348 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RsxB complement(1533770..1534348) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252976 NP_460422.1 CDS rsxA NC_003197.1 1534348 1534929 R inner membrane protein; electron transport complex protein RsxA complement(1534348..1534929) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252977 NP_460423.1 CDS ydgK NC_003197.1 1535006 1535446 R inner membrane protein complement(1535006..1535446) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252978 NP_460424.3 CDS ydgT NC_003197.1 1535535 1535750 R YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes; oriC-binding nucleoid-associated protein complement(1535535..1535750) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252979 NP_460425.2 CDS ydgJ NC_003197.1 1536381 1537421 D oxidoreductase 1536381..1537421 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252980 NP_460426.1 CDS add NC_003197.1 1537496 1538497 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(1537496..1538497) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252981 NP_460427.1 CDS ydgA NC_003197.1 1539201 1540709 R periplasmic protein complement(1539201..1540709) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252984 NP_460428.1 CDS manA NC_003197.1 1540812 1541987 R mannose-6-phosphate isomerase (SW:MANA_SALTY); mannose-6-phosphate isomerase complement(1540812..1541987) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252985 NP_460429.1 CDS fumA NC_003197.1 1542187 1543929 D fumarate hydratase class I aerobic isozyme (SW:FUMA_SALTY); class I fumarate hydratase 1542187..1543929 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252986 NP_460430.1 CDS fumC NC_003197.1 1544000 1545403 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; class II fumarate hydratase 1544000..1545403 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252987 NP_460431.1 CDS tus NC_003197.1 1545400 1546329 R binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein complement(1545400..1546329) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252988 NP_460432.1 CDS rstB NC_003197.1 1546405 1547706 R sensory histidine kinase RstB complement(1546405..1547706) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252989 NP_460433.1 CDS STM1472 NC_003197.1 1547817 1549523 R periplasmic protein complement(1547817..1549523) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252990 NP_460434.1 CDS ompN NC_003197.1 1549676 1550809 R outer membrane protein N complement(1549676..1550809) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252991 NP_460435.1 CDS rstA NC_003197.1 1551289 1552020 R response regulator in two-component regulatory system with RstB; response regulator RstA complement(1551289..1552020) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252993 NP_460436.1 CDS ydgC NC_003197.1 1552147 1552482 D inner membrane protein 1552147..1552482 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252994 NP_460437.1 CDS ydgI NC_003197.1 1552544 1553926 R amino acid transporter complement(1552544..1553926) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252995 NP_460438.1 CDS ydgH NC_003197.1 1554224 1555168 R periplasmic protein complement(1554224..1555168) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252996 NP_460439.1 CDS pntA NC_003197.1 1555695 1557224 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 1555695..1557224 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252997 NP_460440.1 CDS pntB NC_003197.1 1557235 1558623 D catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; NAD(P) transhydrogenase subunit beta 1557235..1558623 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252998 NP_460441.1 CDS tqsA NC_003197.1 1558798 1559832 R transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; membrane transport protein complement(1558798..1559832) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252999 NP_460442.1 CDS ydgF NC_003197.1 1560250 1560612 D with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS; spermidine export protein MdtJ 1560250..1560612 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253000 NP_460443.1 CDS ydgE NC_003197.1 1560599 1560928 D with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS; spermidine export protein MdtI 1560599..1560928 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253001 NP_460444.1 CDS STM1484 NC_003197.1 1560968 1561789 R protease complement(1560968..1561789) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253002 NP_460445.2 CDS STM1485 NC_003197.1 1562058 1562306 R required for growth and survival under moderately acid conditions; acid shock protein complement(1562058..1562306) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253003 NP_460446.1 CDS ynfM NC_003197.1 1562701 1563954 R MFS familty transport protein complement(1562701..1563954) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253004 NP_460447.1 CDS ynfL NC_003197.1 1564074 1564973 D LysR family transcriptional regulator 1564074..1564973 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253005 NP_460448.1 CDS mlc NC_003197.1 1565101 1566321 D pts operon transcriptional repressor 1565101..1566321 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253006 NP_460449.1 CDS bioD NC_003197.1 1566447 1567142 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; ATP-dependent dithiobiotin synthetase BioD 1566447..1567142 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253007 NP_460450.2 CDS STM1490 NC_003197.1 1567098 1568351 R voltage-gated ClC-type chloride channel ClcB complement(1567098..1568351) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253008 NP_460451.1 CDS STM1491 NC_003197.1 1568523 1569671 R ABC transporter ATP-binding protein complement(1568523..1569671) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253009 NP_460452.1 CDS STM1492 NC_003197.1 1569671 1570318 R ABC transporter permease complement(1569671..1570318) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253010 NP_460453.1 CDS STM1493 NC_003197.1 1570328 1571230 R ABC transporter substrate-binding protein complement(1570328..1571230) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253011 NP_460454.1 CDS STM1494 NC_003197.1 1571259 1571969 R ABC transporter permease complement(1571259..1571969) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253012 NP_460455.1 CDS ynfI NC_003197.1 1572274 1572888 R binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane; Tat proofreading chaperone DmsD complement(1572274..1572888) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253013 NP_460456.1 CDS STM1496 NC_003197.1 1572931 1573788 R dimethylsulfoxide reductase subunit C complement(1572931..1573788) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253014 NP_460457.1 CDS STM1497 NC_003197.1 1573790 1574407 R dimethyl sulfoxide reductase subunit B complement(1573790..1574407) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253015 NP_460458.1 CDS STM1498 NC_003197.1 1574418 1576853 R dimethyl sulfoxide reductase subunit A complement(1574418..1576853) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253016 NP_460459.1 CDS STM1499 NC_003197.1 1576952 1579393 R dimethyl sulfoxide reductase subunit A complement(1576952..1579393) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253017 NP_460460.1 CDS ynfD NC_003197.1 1579547 1579855 R outer membrane protein complement(1579547..1579855) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253018 NP_460461.2 CDS ynfC NC_003197.1 1579959 1580669 D lipoprotein 1579959..1580669 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253019 NP_460462.1 CDS speG NC_003197.1 1580710 1581270 R spermidine N1-acetyltransferase complement(1580710..1581270) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253020 NP_460463.1 CDS STM1503 NC_003197.1 1581306 1581647 R hypothetical protein complement(1581306..1581647) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253021 NP_460464.1 CDS ynfA NC_003197.1 1581800 1582126 D membrane protein 1581800..1582126 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253022 NP_460465.1 CDS rspA NC_003197.1 1582248 1583462 D tarvation sensing protein RpsA; bifunctional D-altronate/D-mannonate dehydratase 1582248..1583462 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253023 NP_460466.1 CDS rspB NC_003197.1 1583473 1584492 D dehydrogenase 1583473..1584492 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253024 NP_460468.1 CDS ydfI NC_003197.1 1586069 1587535 D mannitol dehydrogenase 1586069..1587535 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253026 NP_460469.1 CDS ydfZ NC_003197.1 1587602 1587805 R cytoplasmic protein complement(1587602..1587805) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253027 NP_460470.1 CDS ydfH NC_003197.1 1587986 1588672 R GntR family; GntR family regulatory protein complement(1587986..1588672) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253028 NP_460471.1 CDS ydfG NC_003197.1 1588802 1589548 R NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine; L-serine/L-allo-threonine dehydrogenase complement(1588802..1589548) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253029 NP_460472.1 CDS dcp NC_003197.1 1589687 1591729 D peptidyl-dipeptidase DCP (SW:DCP_SALTY); peptidyl-dipeptidase 1589687..1591729 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253030 NP_460473.1 CDS STM1513 NC_003197.1 1592074 1592256 D cytoplasmic protein 1592074..1592256 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253031 NP_460474.1 CDS ydeJ NC_003197.1 1592376 1592903 R competence damage-inducible protein A complement(1592376..1592903) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253032 NP_460475.1 CDS ydeI NC_003197.1 1593330 1593722 D periplasmic protein 1593330..1593722 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253033 NP_460476.1 CDS ydeE NC_003197.1 1594414 1595601 R YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters; MFS family transport protein complement(1594414..1595601) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253034 NP_460477.1 CDS ydeD NC_003197.1 1595829 1596731 D amino-acid metabolite efflux pump 1595829..1596731 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253035 NP_460478.1 CDS marB NC_003197.1 1596850 1597065 R multiple antibiotic resistance protein MarB complement(1596850..1597065) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253036 NP_460479.3 CDS marA NC_003197.1 1597094 1597477 R transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF; DNA-binding transcriptional activator MarA complement(1597094..1597477) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253037 NP_460480.1 CDS marR NC_003197.1 1597497 1597931 R Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes; DNA-binding transcriptional repressor MarR complement(1597497..1597931) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253038 NP_460481.1 CDS marC NC_003197.1 1598190 1598855 D in E.coli K-12 this protein is not involved in antibiotic resistance; inner membrane protein MarC 1598190..1598855 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253039 NP_460482.1 CDS ydeA NC_003197.1 1598902 1600092 R sugar efflux transporter complement(1598902..1600092) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253040 NP_460483.1 CDS yneJ NC_003197.1 1600208 1601080 R LysR family transcriptional regulator complement(1600208..1601080) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253041 NP_460484.1 CDS yneI NC_003197.1 1601183 1602571 D in Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase; succinate semialdehyde dehydrogenase 1601183..1602571 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253042 NP_460485.1 CDS yneH NC_003197.1 1602644 1603570 D catalyzes the formation of glutamate from glutamine; glutaminase 1602644..1603570 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253043 NP_460486.1 CDS yneG NC_003197.1 1603570 1603929 D cytoplasmic protein 1603570..1603929 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253044 NP_460487.1 CDS STM1527 NC_003197.1 1604153 1605100 D hypothetical protein 1604153..1605100 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253045 NP_460488.1 CDS STM1528 NC_003197.1 1605156 1605698 R outer membrane protein complement(1605156..1605698) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253046 NP_460490.1 CDS STM1530 NC_003197.1 1606415 1607533 D outer membrane protein 1606415..1607533 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253048 NP_460491.1 CDS STM1531 NC_003197.1 1607674 1608015 R hydrogenase nickel incorporation protein HypA complement(1607674..1608015) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253049 NP_460492.1 CDS STM1532 NC_003197.1 1608028 1608915 R dehydrogenase protein complement(1608028..1608915) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253050 NP_460493.1 CDS STM1533 NC_003197.1 1608903 1609964 R hydrogenase complement(1608903..1609964) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253051 NP_460494.1 CDS STM1534 NC_003197.1 1609982 1610392 R hydrogenase expression/formation protein complement(1609982..1610392) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253052 NP_460495.1 CDS STM1535 NC_003197.1 1610389 1610688 R hydrogenase protein complement(1610389..1610688) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253053 NP_460496.1 CDS STM1536 NC_003197.1 1610688 1611296 R processing of HyaA and HyaB proteins; hydrogenase maturation protease complement(1610688..1611296) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253054 NP_460497.1 CDS STM1537 NC_003197.1 1611302 1612045 R Ni/Fe hydrogenase 1 b-type cytochrome subunit complement(1611302..1612045) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253055 NP_460498.1 CDS STM1538 NC_003197.1 1611996 1613798 R hydrogenase-1 large subunit complement(1611996..1613798) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253056 NP_460499.1 CDS STM1539 NC_003197.1 1613801 1614904 R hydrogenase-1 small subunit complement(1613801..1614904) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253057 NP_460500.1 CDS STM1540 NC_003197.1 1615333 1616424 D hydrolase 1615333..1616424 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253058 NP_460501.1 CDS STM1541 NC_003197.1 1616470 1617261 D GntR family regulatory protein 1616470..1617261 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253059 NP_460502.1 CDS STM1542 NC_003197.1 1617320 1618345 R zinc-binding dehydrogenase complement(1617320..1618345) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253060 NP_460503.1 CDS STM1543 NC_003197.1 1618320 1619606 R transporter complement(1618320..1619606) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253061 NP_460504.1 CDS pqaA NC_003197.1 1619783 1621339 R PhoPQ-regulated protein complement(1619783..1621339) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253062 NP_460505.1 CDS STM1545 NC_003197.1 1621409 1622650 R multidrug efflux protein complement(1621409..1622650) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253063 NP_460506.1 CDS STM1546 NC_003197.1 1622640 1624148 R hypothetical protein complement(1622640..1624148) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253064 NP_460507.1 CDS STM1547 NC_003197.1 1624193 1624681 D marR-family; MarR family transcriptional regulator 1624193..1624681 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253065 NP_460508.2 CDS STM1548.s NC_003197.1 1624874 1625953 D S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 1624874..1625953 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253066 NP_460509.1 CDS STM1549 NC_003197.1 1626005 1626394 R translation initiation inhibitor complement(1626005..1626394) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253067 NP_460510.1 CDS STM1550 NC_003197.1 1626565 1626849 R cytoplasmic protein complement(1626565..1626849) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253068 NP_460511.1 CDS STM1551 NC_003197.1 1626839 1627087 R cytoplasmic protein complement(1626839..1627087) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253069 NP_945161.1 CDS STM1551.1n NC_003197.1 1627444 1627776 D hypothetical protein 1627444..1627776 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673754 NP_460512.1 CDS STM1552 NC_003197.1 1627919 1628827 D cytoplasmic protein 1627919..1628827 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253070 YP_006892393.1 CDS STM05155 NC_003197.1 1629926 1630135 R hypothetical protein complement(1629926..1630135) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865722 NP_460513.1 CDS STM1554 NC_003197.1 1630405 1631871 R coiled-coil protein complement(1630405..1631871) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253072 NP_460514.1 CDS STM1555 NC_003197.1 1632130 1633137 D transcriptional regulator 1632130..1633137 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253073 NP_460515.1 CDS STM1556 NC_003197.1 1633281 1634732 D Na+/H+ antiporter 1633281..1634732 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253074 NP_460516.1 CDS STM1557 NC_003197.1 1634745 1635947 D aminotransferase 1634745..1635947 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253075 NP_460517.1 CDS STM1558 NC_003197.1 1636060 1638135 R glycosyl hydrolase complement(1636060..1638135) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253076 NP_460518.1 CDS STM1559 NC_003197.1 1638192 1640720 R glycosyl hydrolase complement(1638192..1640720) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253077 NP_460519.1 CDS STM1560 NC_003197.1 1640717 1642501 R malto-oligosyltrehalose trehalohydrolase complement(1640717..1642501) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253078 NP_460520.1 CDS STM1561 NC_003197.1 1642630 1643415 R outer membrane or secreted; lipoprotein complement(1642630..1643415) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253079 NP_460521.1 CDS hdeB NC_003197.1 1643558 1643887 R acid stress chaperone HdeB complement(1643558..1643887) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253080 NP_460522.1 CDS osmC NC_003197.1 1644237 1644668 R peroxiredoxin OsmC complement(1644237..1644668) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253081 NP_460523.1 CDS yddX NC_003197.1 1645181 1645396 D biofilm-dependent modulation protein 1645181..1645396 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253082 NP_460524.1 CDS rpsV NC_003197.1 1645491 1645634 D protein D; stationary-phase-induced ribosome-associated; in Escherichia coli this protein becomes associated with the ribosome; expression increases during stationary phase; 30S ribosomal subunit S22 1645491..1645634 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253083 NP_460525.1 CDS sfcA NC_003197.1 1645811 1647508 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1645811..1647508 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253084 NP_460526.1 CDS adhP NC_003197.1 1647794 1648804 D alcohol dehydrogenase 1647794..1648804 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253085 NP_460527.1 CDS fdnI NC_003197.1 1648895 1649551 R nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase; formate dehydrogenase-N cytochrome B556 subunit gamma complement(1648895..1649551) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253086 NP_460528.1 CDS fdnH NC_003197.1 1649544 1650428 R formate dehydrogenase-N, Fe-S subunit beta complement(1649544..1650428) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253087 NP_460529.1 CDS fdnG NC_003197.1 1650442 1653489 R molybdopterin oxidoreductases complement(1650442..1653489) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253088 NP_460530.2 CDS yddG NC_003197.1 1653767 1654648 D permease 1653767..1654648 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253089 NP_460531.1 CDS ompD NC_003197.1 1655173 1656261 D outer membrane porin protein OmpD 1655173..1656261 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253090 NP_460532.2 CDS STM1573.Sc NC_003197.1 1656345 1656785 D hypothetical protein 1656345..1656785 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253091 NP_460533.1 CDS smvA NC_003197.1 1656810 1658297 R methyl viologen resistance protein SmvA (SW:SMVA_SALTY); methyl viologen resistance protein SmvA complement(1656810..1658297) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253092 NP_460534.1 CDS STM1575 NC_003197.1 1658415 1658993 D TetR family; TetR family transcription regulator 1658415..1658993 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253093 NP_460535.1 CDS narU NC_003197.1 1659208 1660596 D MFS superfamily; nitrate/nitrite transporter NarU 1659208..1660596 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253094 NP_460536.1 CDS narZ NC_003197.1 1660688 1664428 D nitrate reductase 2 subunit alpha 1660688..1664428 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253095 NP_460537.1 CDS narY NC_003197.1 1664425 1665969 D nitrate reductase 2 subunit beta 1664425..1665969 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253096 NP_460538.1 CDS narW NC_003197.1 1665969 1666664 D nitrate reductase 2 subunit delta 1665969..1666664 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253097 NP_460539.1 CDS narV NC_003197.1 1666661 1667341 D nitrate reductase 2 subunit gamma 1666661..1667341 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253098 NP_460540.1 CDS yddE NC_003197.1 1667447 1668340 D isomerase 1667447..1668340 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253099 NP_460541.1 CDS nhoA NC_003197.1 1668376 1669221 R N-hydroxyarylamine O-acetyltransferase (SW:NHOA_SALTY); N-hydroxyarylamine O-acetyltransferase complement(1668376..1669221) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253100 NP_460542.1 CDS STM1583 NC_003197.1 1669505 1670137 R secreted effector protein SteA complement(1669505..1670137) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253101 NP_460543.1 CDS ansP NC_003197.1 1670649 1672142 D L-asparagine permease 1670649..1672142 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253102 NP_460544.1 CDS STM1585 NC_003197.1 1672219 1672440 R outer membrane lipoprotein complement(1672219..1672440) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253103 NP_460545.1 CDS STM1586 NC_003197.1 1672585 1673646 R hypothetical protein complement(1672585..1673646) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253104 NP_460546.1 CDS yncD NC_003197.1 1673910 1676030 D outer membrane receptor 1673910..1676030 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253105 NP_460547.1 CDS yncC NC_003197.1 1676097 1676762 R GntR family; GntR family regulatory protein complement(1676097..1676762) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253106 NP_460548.1 CDS yncB NC_003197.1 1677096 1678166 R NADP-dependent oxidoreductase complement(1677096..1678166) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253107 NP_460549.1 CDS yncA NC_003197.1 1678345 1678860 D acyltransferase 1678345..1678860 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253108 NP_460550.1 CDS ydcZ NC_003197.1 1678860 1679309 D inner membrane protein 1678860..1679309 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253109 NP_460551.1 CDS ydcY NC_003197.1 1679314 1679547 R cytoplasmic protein complement(1679314..1679547) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253110 NP_460552.1 CDS srfA NC_003197.1 1679771 1681090 D SrfA; ssrAB-activated gene; SsrAB activated protein 1679771..1681090 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253111 NP_460553.1 CDS srfB NC_003197.1 1681095 1684076 D SrfB ; ssrAB-activated gene; SsrAB activated protein 1681095..1684076 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253112 NP_460554.1 CDS srfC NC_003197.1 1684073 1686217 D SrfC; contains predicted coiled-coil structure; ssrAB-activated gene; SsrAB activated protein 1684073..1686217 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253113 NP_460555.1 CDS ydcX NC_003197.1 1686262 1686525 R inner membrane protein complement(1686262..1686525) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253114 NP_460556.2 CDS ydcW NC_003197.1 1686834 1688258 R catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase complement(1686834..1688258) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253115 NP_460557.1 CDS ydcR NC_003197.1 1688394 1689818 R GntR family regulatory protein complement(1688394..1689818) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253116 NP_460558.1 CDS pdgL NC_003197.1 1689954 1690724 R D-alanyl-D-alanine dipeptidase for peptidoglycan digestion; periplasmic dipeptidase complement(1689954..1690724) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253117 NP_460560.1 CDS ugtL NC_003197.1 1691246 1691644 R membrane protein complement(1691246..1691644) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253119 NP_460561.1 CDS sifB NC_003197.1 1692181 1693131 D translocated by the type III secretion system SPI-2; localizes to Sifs in infected cells and specifically to Salmonella-containing vacuoles; secreted effector protein SifB 1692181..1693131 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253120 NP_460562.1 CDS yncJ NC_003197.1 1693405 1693635 D periplasmic protein 1693405..1693635 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253121 NP_460563.1 CDS ydcP NC_003197.1 1693636 1695600 R collagenase complement(1693636..1695600) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253122 NP_460564.1 CDS ydcN NC_003197.1 1695679 1696215 R oxidoreductase; repressor complement(1695679..1696215) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253123 NP_460565.1 CDS STM1606 NC_003197.1 1696306 1697484 D benzoate membrane transport protein 1696306..1697484 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253124 NP_460566.1 CDS STM1607 NC_003197.1 1697538 1698206 R outer membrane lipoprotein complement(1697538..1698206) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253125 NP_460567.1 CDS tehB NC_003197.1 1698362 1698958 R with TehA confers resistance to tellurite; tellurite resistance protein TehB complement(1698362..1698958) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253126 NP_460568.1 CDS tehA NC_003197.1 1698945 1699958 R potassium-tellurite ethidium and proflavin transporter complement(1698945..1699958) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253127 NP_460569.1 CDS ydcK NC_003197.1 1700065 1701045 D involved in lipopolysaccharide biosynthesis; nucleoside-diphosphate-sugar pyrophosphorylase 1700065..1701045 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253128 NP_460570.1 CDS rimL NC_003197.1 1701042 1701581 R ribosomal-protein-L7/L12-serine acetyltransferase complement(1701042..1701581) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253129 NP_460571.1 CDS STM1612 NC_003197.1 1701798 1702916 D aminopeptidase SgcX 1701798..1702916 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253130 NP_460572.1 CDS STM1613 NC_003197.1 1702913 1703194 D PTS system transporter subunit IIB 1702913..1703194 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253131 NP_460573.1 CDS STM1614 NC_003197.1 1703205 1704518 D PTS system transporter subunit IIC 1703205..1704518 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253132 NP_460574.1 CDS STM1615 NC_003197.1 1704532 1705338 D nucleoside triphosphatase 1704532..1705338 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253133 NP_460575.1 CDS STM1616 NC_003197.1 1705470 1705907 D PTS system sugar-specific transporter subunit IIA 1705470..1705907 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253134 NP_460576.1 CDS STM1617 NC_003197.1 1705919 1706551 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 1705919..1706551 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253135 NP_460577.1 CDS STM1618 NC_003197.1 1706567 1707358 D sgc operon DeoR familytranscriptional repressor 1706567..1707358 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253136 NP_460578.1 CDS STM1619 NC_003197.1 1707358 1707795 D aminoglycoside N(6')-acetyltransferase 1707358..1707795 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253137 NP_460579.1 CDS STM1620 NC_003197.1 1707842 1709044 R oxidase complement(1707842..1709044) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253138 NP_460580.1 CDS STM1621 NC_003197.1 1709056 1709631 R periplasmic protein complement(1709056..1709631) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253139 NP_460581.1 CDS mdoD NC_003197.1 1709827 1711482 R involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D complement(1709827..1711482) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253140 NP_460582.1 CDS STM1623 NC_003197.1 1711702 1713210 R carboxylesterase complement(1711702..1713210) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253141 NP_460583.1 CDS STM1624 NC_003197.1 1713259 1714602 R cytoplasmic protein complement(1713259..1714602) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253142 NP_460584.1 CDS ydcI NC_003197.1 1714895 1715818 D LysR family transcriptional regulator 1714895..1715818 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253143 NP_460585.1 CDS trg NC_003197.1 1715879 1717504 R methyl-accepting chemotaxis protein III complement(1715879..1717504) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253144 NP_460586.1 CDS STM1627 NC_003197.1 1717673 1718791 R alcohol dehydrogenase class III complement(1717673..1718791) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253145 NP_460587.1 CDS STM1628 NC_003197.1 1718823 1719098 R cytoplasmic protein complement(1718823..1719098) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253146 NP_460589.1 CDS STM1630 NC_003197.1 1720151 1720867 R inner membrane protein complement(1720151..1720867) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253148 NP_460590.1 CDS sseJ NC_003197.1 1721293 1722519 D deacylase activity; secreted effector J; Salmonella translocated effector; regulated by SPI-2; secreted effector protein SseJ 1721293..1722519 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253149 NP_460591.1 CDS STM1632 NC_003197.1 1722640 1722984 R inner membrane protein complement(1722640..1722984) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253150 NP_460592.1 CDS STM1633 NC_003197.1 1723891 1724652 D extracellular solute-binding protein 1723891..1724652 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253151 NP_460593.1 CDS STM1634 NC_003197.1 1724659 1725306 D ABC transporter permease 1724659..1725306 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253152 NP_460594.1 CDS STM1635 NC_003197.1 1725331 1726062 D ABC transporter ATP-binding protein 1725331..1726062 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253153 NP_460595.1 CDS STM1636 NC_003197.1 1726059 1726739 D ABC transporter membrane protein 1726059..1726739 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253154 NP_460596.1 CDS STM1637 NC_003197.1 1726876 1728426 D inner membrane protein 1726876..1728426 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253155 NP_460597.1 CDS STM1638 NC_003197.1 1729115 1729552 D SAM-dependent methyltransferase 1729115..1729552 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253156 NP_460598.1 CDS cybB NC_003197.1 1729823 1730353 R B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm; cytochrome b561 complement(1729823..1730353) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253157 NP_460599.1 CDS ydcF NC_003197.1 1730470 1731270 R inner membrane protein complement(1730470..1731270) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253158 NP_460600.3 CDS hrpA NC_003197.1 1731334 1735236 R involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase complement(1731334..1735236) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253159 NP_460601.1 CDS acpD NC_003197.1 1735437 1736042 D FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; FMN-dependent NADH-azoreductase 1735437..1736042 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253160 NP_460602.1 CDS STM1643 NC_003197.1 1736039 1736488 R inner membrane protein complement(1736039..1736488) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253161 NP_460603.1 CDS ydbL NC_003197.1 1736631 1736954 R periplasmic protein complement(1736631..1736954) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253162 NP_460604.1 CDS ynbE NC_003197.1 1736962 1737153 R outer membrane lipoprotein complement(1736962..1737153) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253163 NP_460605.1 CDS ydbH NC_003197.1 1737153 1739789 R periplasmic protein complement(1737153..1739789) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253164 NP_460606.1 CDS ldhA NC_003197.1 1740029 1741018 D Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes; D-lactate dehydrogenase 1740029..1741018 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253165 NP_460607.1 CDS hslJ NC_003197.1 1741129 1741539 D heat-inducible protein HslJ 1741129..1741539 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253166 NP_460608.1 CDS STM1649 NC_003197.1 1741583 1741738 R cytoplasmic protein complement(1741583..1741738) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253167 NP_460609.1 CDS STM1650 NC_003197.1 1741765 1742064 D hypothetical protein 1741765..1742064 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253168 NP_460610.1 CDS nifJ NC_003197.1 1742125 1745649 D pyruvate-flavodoxin oxidoreductase 1742125..1745649 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253169 NP_460611.1 CDS ynaF NC_003197.1 1746131 1746565 D universal stress protein F 1746131..1746565 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253170 NP_460612.1 CDS STM1653 NC_003197.1 1746615 1746953 R multidrug transporter EmrE complement(1746615..1746953) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253171 NP_460613.1 CDS ydaO NC_003197.1 1747309 1748244 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; tRNA 2-thiocytidine biosynthesis protein TtcA 1747309..1748244 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253172 NP_460614.1 CDS dbpA NC_003197.1 1748288 1749661 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(1748288..1749661) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253173 NP_460615.1 CDS zntB NC_003197.1 1750148 1751131 R zinc transport protein ZntB complement(1750148..1751131) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253174 NP_460616.1 CDS STM1657 NC_003197.1 1751277 1752431 R methyl-accepting chemotaxis protein complement(1751277..1752431) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253175 NP_460617.1 CDS ydaL NC_003197.1 1752842 1753405 R contains Smr domain; DNA endonuclease complement(1752842..1753405) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253176 NP_460618.1 CDS ogt NC_003197.1 1753663 1754178 D O-6-alkylguanine-DNA:cysteine-protein methyltransferase; methylated-DNA--protein-cysteine methyltransferase 1753663..1754178 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253177 NP_460619.2 CDS fnr NC_003197.1 1754374 1755126 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 1754374..1755126 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253178 NP_460620.1 CDS ydaA NC_003197.1 1755277 1756224 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein E 1755277..1756224 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253179 NP_460621.1 CDS ynaJ NC_003197.1 1756279 1756533 R inner membrane protein complement(1756279..1756533) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253180 NP_460622.1 CDS ynaI NC_003197.1 1756772 1757803 D integral membrane protein 1756772..1757803 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253181 NP_460623.1 CDS STM1664 NC_003197.1 1757889 1758491 R transcriptional regulator complement(1757889..1758491) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253182 NP_460624.1 CDS STM1665 NC_003197.1 1758535 1759221 D cytoplasmic protein 1758535..1759221 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253183 NP_460625.1 CDS STM1667 NC_003197.1 1759693 1760250 R thiol peroxidase complement(1759693..1760250) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253185 NP_460626.1 CDS STM1668 NC_003197.1 1760349 1761179 R hypothetical protein complement(1760349..1761179) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253186 NP_460627.1 CDS STM1669 NC_003197.1 1761200 1763182 R invasin-like protein complement(1761200..1763182) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253187 NP_460628.1 CDS STM1670 NC_003197.1 1763257 1764102 R lipoprotein complement(1763257..1764102) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253188 NP_460629.1 CDS STM1671 NC_003197.1 1764396 1765253 D regulatory protein 1764396..1765253 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253189 YP_006892394.1 CDS STM1672 NC_003197.1 1765644 1766753 D cytoplasmic protein 1765644..1766753 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673745 NP_460631.2 CDS STM1673 NC_003197.1 1766967 1767128 R outer membrane lipoprotein complement(1766967..1767128) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253191 NP_460632.1 CDS STM1674 NC_003197.1 1767332 1767922 R AraC family; helix-turn-helix; AraC family regulatory protein complement(1767332..1767922) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253192 NP_460633.1 CDS STM1675 NC_003197.1 1768000 1768713 D short-chain alcohol dehydrogenase 1768000..1768713 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253193 NP_460634.1 CDS STM1676 NC_003197.1 1768804 1769673 R aldo/keto reductase complement(1768804..1769673) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253194 NP_460635.1 CDS STM1677 NC_003197.1 1769947 1770852 R LysR family transcriptional regulator complement(1769947..1770852) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253195 NP_460636.1 CDS STM1678 NC_003197.1 1770971 1771900 D 2'-hydroxyisoflavone reductase 1770971..1771900 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253196 NP_460637.1 CDS mppA NC_003197.1 1771997 1773610 R periplasmic murein tripeptide transport protein complement(1771997..1773610) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253197 NP_460638.1 CDS ycjI NC_003197.1 1773800 1774528 D murein peptide amidase A 1773800..1774528 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253198 NP_460639.1 CDS ycjG NC_003197.1 1774503 1775468 R chloromuconate cycloisomerase complement(1774503..1775468) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253199 NP_460640.1 CDS tpx NC_003197.1 1775584 1776090 D antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1775584..1776090 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253200 NP_460641.1 CDS tyrR NC_003197.1 1776180 1777721 R regulates genes involved in the biosynthesis and transport of aromatic amino acids; DNA-binding transcriptional regulator TyrR complement(1776180..1777721) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253201 NP_460642.1 CDS STM1684 NC_003197.1 1777869 1778930 R hypothetical protein complement(1777869..1778930) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253202 NP_460643.2 CDS ycjX NC_003197.1 1778927 1780324 R ATPase complement(1778927..1780324) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253203 NP_460644.1 CDS pspE NC_003197.1 1780473 1780787 R rhodanese; catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide; thiosulfate:cyanide sulfurtransferase complement(1780473..1780787) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253204 NP_460645.1 CDS pspD NC_003197.1 1780863 1781081 R inner membrane phage-shock protein complement(1780863..1781081) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253205 NP_460646.1 CDS pspC NC_003197.1 1781104 1781463 R with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock; DNA-binding transcriptional activator PspC complement(1781104..1781463) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253206 NP_460647.1 CDS pspB NC_003197.1 1781463 1781687 R acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein PspB complement(1781463..1781687) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253207 NP_460648.1 CDS pspA NC_003197.1 1781747 1782415 R involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; phage shock protein PspA complement(1781747..1782415) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253208 NP_460649.1 CDS pspF NC_003197.1 1782586 1783566 D transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; transcription activator 1782586..1783566 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253209 NP_460650.1 CDS sapA NC_003197.1 1783678 1785327 D peptide transport periplasmic protein SapA (SW:SAPA_SALTY); ABC superfamily periplasmic protein; peptide ABC transporter substrate-binding protein SapA 1783678..1785327 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253210 NP_460651.1 CDS sapB NC_003197.1 1785324 1786289 D peptide transport system permease protein SapB (SW:SAPB_SALTY); ABC superfamily membrane protein; peptide ABC transporter permease SapB 1785324..1786289 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253211 NP_460652.1 CDS sapC NC_003197.1 1786276 1787166 D peptide transport system permease protein SapC (SW:SAPC_SALTY); ABC superfamily membrane protein; peptide ABC transporter permease SapC 1786276..1787166 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253212 NP_460653.1 CDS sapD NC_003197.1 1787166 1788158 D peptide transport system atp-binding protein SapD (SW:SAPD_SALTY); ABC superfamily ATP-binding protein; peptide ABC transporter ATP-binding protein SapD 1787166..1788158 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253213 NP_460654.1 CDS sapF NC_003197.1 1788160 1788966 D peptide transport system atp-binding protein SapF (SW:SAPF_SALTY); ABC superfamily ATP-binding protein; peptide ABC transporter ATP-binding protein SapF 1788160..1788966 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253214 NP_460655.1 CDS STM1697 NC_003197.1 1789095 1789691 R diguanylate cyclase/phosphodiesterase domain 2; diguanylate cyclase/phosphodiesterase domain-containing protein complement(1789095..1789691) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253215 NP_460656.1 CDS STM1698 NC_003197.1 1790157 1791530 R secreted effector kinase SteC complement(1790157..1791530) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253216 NP_460657.1 CDS STM1698A NC_003197.1 1791565 1791744 D e6 protein; hypothetical protein 1791565..1791744 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253217 NP_460658.1 CDS STM1699 NC_003197.1 1791719 1792018 D hypothetical 10.4 kDa protein in fabI/envM 5'region (SW:YCJE_SALTY); hypothetical protein 1791719..1792018 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253218 NP_460659.1 CDS fabI NC_003197.1 1792136 1792924 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase FabI 1792136..1792924 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253219 NP_460660.1 CDS yciW NC_003197.1 1793124 1794104 D cytoplasmic protein 1793124..1794104 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253220 NP_460661.1 CDS rnb NC_003197.1 1794346 1796280 D Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 1794346..1796280 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253221 NP_460662.1 CDS yciR NC_003197.1 1796542 1798524 D c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; RNase II stability modulator 1796542..1798524 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253222 YP_006892395.1 CDS STM05225 NC_003197.1 1798646 1798825 D hypothetical protein 1798646..1798825 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865731 NP_460663.1 CDS yciT NC_003197.1 1798912 1799664 D DeoR family regulatory protein 1798912..1799664 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253223 NP_460664.1 CDS osmB NC_003197.1 1799923 1800141 D osmotically inducible lipoprotein B 1799923..1800141 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253224 NP_460665.1 CDS yciH NC_003197.1 1800261 1800587 R involved in start site selection during the initiation of translation; translation initiation factor Sui1 complement(1800261..1800587) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253225 NP_460666.1 CDS pyrF NC_003197.1 1800587 1801324 R OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(1800587..1801324) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253226 NP_460667.1 CDS yciM NC_003197.1 1801515 1802684 R N-acetylglucosaminyl transferase complement(1801515..1802684) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253227 NP_460668.1 CDS yciS NC_003197.1 1802691 1802999 R inner membrane protein complement(1802691..1802999) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253228 NP_460669.1 CDS pgpB NC_003197.1 1803149 1803913 R phosphatidylglycerophosphate phosphatase B complement(1803149..1803913) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253229 NP_460670.1 CDS ribA NC_003197.1 1804109 1804699 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1804109..1804699 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253230 NP_460671.1 CDS acnA NC_003197.1 1804755 1807430 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1804755..1807430) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253231 NP_460672.1 CDS cysB NC_003197.1 1808407 1809381 R LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; HTH-type transcriptional regulator CysB complement(1808407..1809381) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253232 NP_460673.1 CDS topA NC_003197.1 1809792 1812389 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(1809792..1812389) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253233 NP_460674.1 CDS yciN NC_003197.1 1812792 1813043 D cytoplasmic protein 1812792..1813043 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253234 NP_460675.1 CDS sohB NC_003197.1 1813085 1814131 R SohB; periplasmic protein; member of the peptidase S49 family; peptidase complement(1813085..1814131) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253235 NP_460676.1 CDS yciK NC_003197.1 1814369 1815130 D oxoacyl-ACP reductase 1814369..1815130 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253236 NP_460677.1 CDS cobA NC_003197.1 1815127 1815717 D catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1815127..1815717 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253237 NP_460678.1 CDS yciL NC_003197.1 1815804 1816679 R catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; rRNA large subunit pseudouridylate synthase B complement(1815804..1816679) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253238 NP_460679.1 CDS STM1720 NC_003197.1 1816780 1817400 R translation factor; hypothetical protein complement(1816780..1817400) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253239 NP_460680.1 CDS trpH NC_003197.1 1817408 1818289 R TrpH protein (SW:TRPH_SALTY); TrpR controlled transcriptional unit in the 5' upstream region of the trp operon; protein TrpH complement(1817408..1818289) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253240 YP_009026985.1 CDS STM1722a NC_003197.1 1818411 1818455 D trp operon leader peptide 1818411..1818455 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 19018714 NP_460682.1 CDS trpE NC_003197.1 1818550 1820112 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1818550..1820112 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253242 NP_460683.1 CDS trpD NC_003197.1 1820112 1821707 D bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase 1820112..1821707 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253243 NP_460684.1 CDS trpC NC_003197.1 1821711 1823069 D monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1821711..1823069 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253244 NP_460685.1 CDS trpB NC_003197.1 1823079 1824272 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1823079..1824272 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253245 NP_460686.1 CDS trpA NC_003197.1 1824272 1825078 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1824272..1825078 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253246 NP_460687.1 CDS yciG NC_003197.1 1825558 1825740 D cytoplasmic protein 1825558..1825740 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253247 NP_460688.1 CDS yciF NC_003197.1 1825830 1826333 D cytoplasmic protein 1825830..1826333 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253248 NP_460689.1 CDS yciE NC_003197.1 1826407 1826913 D cytoplasmic protein 1826407..1826913 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253249 NP_460690.1 CDS STM1731 NC_003197.1 1826933 1827811 D catalase 1826933..1827811 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253250 NP_460691.1 CDS ompW NC_003197.1 1827893 1828531 R receptor for colicin S4; outer membrane protein W complement(1827893..1828531) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253251 NP_460692.1 CDS STM1733 NC_003197.1 1828869 1829273 D ferredoxin 1828869..1829273 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253252 NP_460693.1 CDS STM1734 NC_003197.1 1829299 1830042 D hypothetical protein 1829299..1830042 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253253 NP_460694.1 CDS yciB NC_003197.1 1830099 1830638 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1830099..1830638 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253254 NP_460695.1 CDS yciA NC_003197.1 1830799 1831200 D YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins; acyl-CoA thioester hydrolase 1830799..1831200 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253255 NP_460696.1 CDS tonB NC_003197.1 1831260 1831988 R membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of iron-siderophore complexes, vitamin B12 and colicins; transport protein TonB complement(1831260..1831988) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253256 NP_460697.1 CDS yciI NC_003197.1 1832212 1832508 D unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; cytoplasmic protein 1832212..1832508 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253257 NP_460698.1 CDS cls NC_003197.1 1832868 1834328 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 1832868..1834328 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253258 YP_006892396.1 CDS STM1740 NC_003197.1 1834362 1834691 D dsDNA-mimic protein 1834362..1834691 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673771 NP_460700.1 CDS STM1741 NC_003197.1 1834739 1835575 R voltage-gated potassium channel complement(1834739..1835575) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253260 NP_460701.1 CDS oppF NC_003197.1 1835623 1836627 R oligopeptide transport ATP-binding protein; OppF (SW:OPPF_SALTY); ABC superfamily ATP-binding protein; oligopeptide ABC transporter ATP-binding protein OppF complement(1835623..1836627) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253261 NP_460702.1 CDS oppD NC_003197.1 1836624 1837631 R oligopeptide transport ATP-binding protein OppD (SW:OPPD_SALTY); ABC superfamily ATP-binding protein; oligopeptide ABC transporter ATP-binding protein OppD complement(1836624..1837631) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253262 NP_460703.1 CDS oppC NC_003197.1 1837643 1838551 R oligopeptide transport system permease protein OppC (SW:OPPC_SALTY); ABC superfamily membrane protein; oligopeptide ABC transporter permease OppC complement(1837643..1838551) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253263 NP_460704.1 CDS oppB NC_003197.1 1838566 1839486 R oligopeptide transport system permease protein OppB (SW:OPPB_SALTY); ABC superfamily membrane protein; oligopeptide ABC transporter permease OppB complement(1838566..1839486) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253264 NP_460705.2 CDS oppA NC_003197.1 1839608 1841239 R periplasmic oligopeptide-binding protein (SW:OPPA_SALTY); ABC superfamily periplasmic protein; contains chaperone properties; oligopeptide ABC transporter substrate-binding protein OppA complement(1839608..1841239) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253265 NP_460707.1 CDS ychE NC_003197.1 1842004 1842651 R MarC family integral membrane protein complement(1842004..1842651) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253267 NP_460708.1 CDS adhE NC_003197.1 1843128 1845806 D bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1843128..1845806 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253268 NP_460709.1 CDS tdk NC_003197.1 1846003 1846620 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(1846003..1846620) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253269 NP_460710.1 CDS hns NC_003197.1 1847283 1847696 D DNA-binding protein H-NS; histone-like protein HLP-II; protein H1; protein B1 (SW:HNS_SALTY); HU; BH2; HD; NS; pleiotropic regulator; DNA-binding protein H-NS 1847283..1847696 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253270 NP_460711.1 CDS galU NC_003197.1 1847828 1848736 R together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP--glucose-1-phosphate uridylyltransferase subunit GalU complement(1847828..1848736) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253271 NP_460712.1 CDS hnr NC_003197.1 1848939 1849952 R RpoS regulator complement(1848939..1849952) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253272 NP_460713.1 CDS ychK NC_003197.1 1850043 1850948 R phosphoesterase complement(1850043..1850948) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253273 NP_460714.1 CDS STM1755 NC_003197.1 1851059 1851517 D hypothetical protein 1851059..1851517 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253274 NP_460715.1 CDS purU NC_003197.1 1851568 1852410 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1851568..1852410 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253275 NP_460716.1 CDS STM1760 NC_003197.1 1853726 1855255 R contains TPR repeats; hypothetical protein complement(1853726..1855255) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253279 NP_460717.1 CDS narI NC_003197.1 1855497 1856174 R nitrate reductase 1 subunit gamma complement(1855497..1856174) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253280 NP_460718.1 CDS narJ NC_003197.1 1856174 1856884 R nitrate reductase 1 subunit delta complement(1856174..1856884) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253281 NP_460719.1 CDS narH NC_003197.1 1856881 1858416 R nitrate reductase 1 subunit beta complement(1856881..1858416) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253282 NP_460720.1 CDS narG NC_003197.1 1858413 1862156 R nitrate reductase 1 subunit alpha complement(1858413..1862156) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253283 NP_460721.1 CDS narK NC_003197.1 1862544 1863941 R nitrite extrusion protein complement(1862544..1863941) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253284 NP_460722.1 CDS narX NC_003197.1 1864282 1866078 D sensory histidine kinase NarX 1864282..1866078 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253285 NP_460723.1 CDS narL NC_003197.1 1866071 1866721 D two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; response regulator NarL 1866071..1866721 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253286 NP_460724.2 CDS ychP NC_003197.1 1866722 1868104 R invasin complement(1866722..1868104) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253287 NP_460725.1 CDS STM1769 NC_003197.1 1868323 1868676 D hypothetical protein 1868323..1868676 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253288 NP_460726.1 CDS chaB NC_003197.1 1868756 1868986 R in Escherichia coli this protein putatively regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; cation transport regulator complement(1868756..1868986) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253289 NP_460727.1 CDS chaA NC_003197.1 1869253 1870353 D calcium/sodium:proton antiporter 1869253..1870353 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253290 NP_460728.1 CDS kdsA NC_003197.1 1870407 1871261 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1870407..1871261) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253291 NP_460729.1 CDS sirB1 NC_003197.1 1871299 1872108 R regulatory protein SirB1 complement(1871299..1872108) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253292 NP_460730.1 CDS sirB2 NC_003197.1 1872112 1872501 R regulation of invasion genes; regulatory protein SirB2 complement(1872112..1872501) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253293 NP_460731.1 CDS hemK NC_003197.1 1872498 1873331 R HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; release factor glutamine methyltransferase complement(1872498..1873331) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253294 NP_460732.1 CDS prfA NC_003197.1 1873331 1874413 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(1873331..1874413) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253295 NP_460733.1 CDS hemA NC_003197.1 1874454 1875710 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(1874454..1875710) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253296 NP_460734.1 CDS lolB NC_003197.1 1876024 1876647 D Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 1876024..1876647 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253297 NP_460735.1 CDS ipk NC_003197.1 1876644 1877495 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1876644..1877495 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253298 NP_460736.1 CDS prsA NC_003197.1 1877761 1878708 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1877761..1878708 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253299 NP_460737.2 CDS ychM NC_003197.1 1878833 1880518 D transports mono and dicarboxylates; member of the SulP family of sulfate transporters; C4-dicarboxylic acid transporter 1878833..1880518 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253300 NP_460738.1 CDS ychH NC_003197.1 1880563 1880841 R YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function; inner membrane protein complement(1880563..1880841) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253301 NP_460739.2 CDS pth NC_003197.1 1881117 1881701 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1881117..1881701 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253302 NP_460740.1 CDS ychF NC_003197.1 1881818 1882909 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; ribosome-binding ATPase 1881818..1882909 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253303 NP_460741.1 CDS STM1785 NC_003197.1 1883068 1884333 R cytoplasmic protein complement(1883068..1884333) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253304 NP_460742.1 CDS STM1786 NC_003197.1 1884828 1885946 D hydrogenase-1 small subunit 1884828..1885946 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253305 NP_460743.1 CDS STM1787 NC_003197.1 1885943 1887736 D involved in hydrogen cycling during fermentative growth; hydrogenase 1 large subunit 1885943..1887736 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253306 NP_460744.1 CDS STM1788 NC_003197.1 1887755 1888486 D hydrogenase 1 b-type cytochrome subunit 1887755..1888486 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253307 NP_460745.1 CDS STM1789 NC_003197.1 1888483 1889079 D HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); hydrogenase 1 maturation protease 1888483..1889079 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253308 NP_460746.1 CDS STM1790 NC_003197.1 1889069 1889473 D involved in processing hydrogenase proteins HyaA and HyaB; hydrogenase-1 operon protein HyaE 1889069..1889473 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253309 NP_460747.1 CDS STM1791 NC_003197.1 1889470 1890318 D hydrogenase-1 protein 1889470..1890318 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253310 NP_460748.1 CDS STM1792 NC_003197.1 1890393 1891937 D cytochrome oxidase subunit I 1890393..1891937 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253311 NP_460749.1 CDS STM1793 NC_003197.1 1891949 1893085 D cytochrome oxidase subunit II 1891949..1893085 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253312 NP_460750.1 CDS STM1794 NC_003197.1 1893098 1893187 D expressed during stationary phase; periplasmic protein 1893098..1893187 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253313 NP_460751.1 CDS STM1795 NC_003197.1 1893531 1894856 D glutamate dehydrogenase 1893531..1894856 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253314 NP_460752.1 CDS treA NC_003197.1 1895070 1896782 D periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; trehalase 1895070..1896782 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253315 NP_460753.1 CDS ymgE NC_003197.1 1896845 1897099 R transglycosylase-associated protein complement(1896845..1897099) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253316 NP_460754.1 CDS ycgR NC_003197.1 1897268 1898002 D Cyclic di-GMP binding protein; flagellar brake protein 1897268..1898002 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253317 NP_460755.1 CDS emtA NC_003197.1 1898016 1898627 R membrane-bound lytic murein transglycosylase A complement(1898016..1898627) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253318 NP_460756.1 CDS ldcA NC_003197.1 1898798 1899712 D catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; L,D-carboxypeptidase A 1898798..1899712 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253319 NP_460757.1 CDS ycgO NC_003197.1 1899809 1901542 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; K(+)/H(+) antiporter 1899809..1901542 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253320 NP_460758.1 CDS dadX NC_003197.1 1901605 1902675 R catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase complement(1901605..1902675) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253321 NP_460759.1 CDS dadA NC_003197.1 1902689 1903987 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(1902689..1903987) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253322 NP_460760.2 CDS STM1804.S NC_003197.1 1904316 1905842 D hypothetical protein 1904316..1905842 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253323 NP_460761.1 CDS fadR NC_003197.1 1905889 1906608 R Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator complement(1905889..1906608) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253324 NP_460762.1 CDS nhaB NC_003197.1 1906828 1908372 D involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 1906828..1908372 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253325 NP_460763.1 CDS dsbB NC_003197.1 1908514 1909044 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 1908514..1909044 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253326 NP_460764.1 CDS STM1808 NC_003197.1 1909153 1909494 D cytoplasmic protein 1909153..1909494 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253327 NP_460765.1 CDS STM1809 NC_003197.1 1909566 1909739 R hypothetical protein complement(1909566..1909739) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253328 NP_460766.1 CDS STM1810 NC_003197.1 1909931 1910068 R cytoplasmic protein complement(1909931..1910068) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253329 NP_460767.2 CDS STM1811 NC_003197.1 1910420 1910866 R hypothetical protein complement(1910420..1910866) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253330 NP_460768.1 CDS ycgM NC_003197.1 1910959 1911618 R fumarylacetoacetate (FAA) hydrolase family protein complement(1910959..1911618) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253331 NP_460769.1 CDS STM1813 NC_003197.1 1911668 1912000 R hypothetical protein complement(1911668..1912000) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253332 NP_460770.1 CDS minC NC_003197.1 1912087 1912794 D blocks the formation of polar Z-ring septums; septum formation inhibitor MinC 1912087..1912794 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253333 NP_460771.1 CDS minD NC_003197.1 1912818 1913630 D ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; ATPase MinD 1912818..1913630 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253334 NP_460772.1 CDS minE NC_003197.1 1913634 1913900 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1913634..1913900 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253335 NP_460773.1 CDS rnd NC_003197.1 1914022 1915149 R ribonuclease D complement(1914022..1915149) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253336 NP_460774.1 CDS fadD NC_003197.1 1915222 1916907 R Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(1915222..1916907) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253337 NP_460775.1 CDS slp NC_003197.1 1917112 1917693 R outer membrane protein complement(1917112..1917693) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253338 NP_460776.1 CDS tsaB NC_003197.1 1917765 1918460 R tRNA threonylcarbamoyladenosine biosynthesis protein TsaB complement(1917765..1918460) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253339 NP_460777.1 CDS yoaA NC_003197.1 1918518 1920428 R DNA helicase complement(1918518..1920428) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253340 NP_460778.1 CDS yoaB NC_003197.1 1920559 1920903 D translation initiation inhibitor 1920559..1920903 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253341 NP_460779.1 CDS STM1823 NC_003197.1 1920909 1921088 R hypothetical protein in fadD-pabB intergenic region (SW:YOAH_SALTY); hypothetical protein complement(1920909..1921088) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253342 NP_460780.1 CDS pabB NC_003197.1 1921169 1922533 D catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; aminodeoxychorismate synthase component 1 1921169..1922533 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253343 NP_460781.1 CDS nudL NC_003197.1 1922537 1923115 D hypothetical protein in pabB-sdaA intergenic region (SW:YEAB_SALTY); Nudix hydrolase NudL 1922537..1923115 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253344 NP_460782.1 CDS sdaA NC_003197.1 1923379 1924743 D L-serine deaminase I/L-threonine deaminase I 1923379..1924743 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253345 NP_460783.2 CDS STM1827.S NC_003197.1 1924881 1926482 D diguanylate cyclase/phosphodiesterase 1924881..1926482 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253346 NP_460784.1 CDS yoaE NC_003197.1 1926504 1928060 R inner membrane protein complement(1926504..1928060) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253347 NP_460785.1 CDS STM1829 NC_003197.1 1928048 1928383 R cytoplasmic protein complement(1928048..1928383) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253348 NP_460786.1 CDS manX NC_003197.1 1928533 1929501 D PTS system mannose-specific transporter subunit IIAB 1928533..1929501 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253349 NP_460787.1 CDS manY NC_003197.1 1929554 1930354 D PTS system mannose-specific transporter subunit IIC 1929554..1930354 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253350 NP_460788.1 CDS manZ NC_003197.1 1930358 1931218 D phosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID 1930358..1931218 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253351 NP_460789.1 CDS STM1833 NC_003197.1 1931276 1931746 D hypothetical protein 1931276..1931746 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253352 NP_460790.1 CDS mntP NC_003197.1 1932090 1932710 D membrane protein YebN; manganese efflux pump MntP 1932090..1932710 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253353 NP_460791.1 CDS rrmA NC_003197.1 1932707 1933516 R methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA m1G745 methyltransferase complement(1932707..1933516) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253354 NP_460792.1 CDS STM1836 NC_003197.1 1933582 1935327 R penicillin-binding protein 3 complement(1933582..1935327) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253355 NP_460793.1 CDS cspC NC_003197.1 1935547 1935756 R cold shock-like protein CspC (SW:CSPC_SALTY); multicopy suppresses mukB mutants; regulator; cold shock-like protein CspC complement(1935547..1935756) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253356 NP_460794.1 CDS yobF NC_003197.1 1935769 1935912 R cytoplasmic protein complement(1935769..1935912) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253357 NP_460795.1 CDS STM1839 NC_003197.1 1936561 1936848 R periplasmic protein; hypothetical protein complement(1936561..1936848) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253358 NP_460796.1 CDS mgrB NC_003197.1 1936919 1937062 R PhoP/PhoQ regulator MgrB complement(1936919..1937062) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253359 NP_460797.1 CDS STM1841 NC_003197.1 1937220 1937459 D hypothetical protein 1937220..1937459 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253360 NP_460798.1 CDS kdgR NC_003197.1 1937671 1938462 R IclR family transcriptional repressor complement(1937671..1938462) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253361 NP_460799.1 CDS STM1843 NC_003197.1 1938638 1940011 D transporter 1938638..1940011 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253362 NP_460800.1 CDS htpX NC_003197.1 1940059 1940940 R metalloprotease; protease HtpX complement(1940059..1940940) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253363 NP_460801.1 CDS prc NC_003197.1 1941134 1943182 R Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; tail-specific protease complement(1941134..1943182) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253364 NP_460802.1 CDS proQ NC_003197.1 1943202 1943888 R affects solute and DNA transport through an unknown mechanism; ProP effector complement(1943202..1943888) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253365 NP_460803.1 CDS yebR NC_003197.1 1943986 1944570 R free methionine-(R)-sulfoxide reductase complement(1943986..1944570) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253366 NP_460804.1 CDS yebS NC_003197.1 1944612 1945895 D inner membrane protein 1944612..1945895 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253367 NP_460805.1 CDS STM1849 NC_003197.1 1945858 1948497 D inner membrane protein 1945858..1948497 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253368 NP_460806.1 CDS rsmF NC_003197.1 1948575 1950014 D in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA small subunit methyltransferase F 1948575..1950014 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253369 NP_460807.1 CDS STM1851 NC_003197.1 1950129 1950368 D cytoplasmic protein 1950129..1950368 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253370 NP_460808.1 CDS yebW NC_003197.1 1950479 1950670 D inner membrane lipoprotein 1950479..1950670 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253371 NP_460809.1 CDS pphA NC_003197.1 1950689 1951339 R Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins; serine/threonine-protein phosphatase 1 complement(1950689..1951339) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253372 NP_460810.1 CDS STM1854 NC_003197.1 1951563 1951727 R inner membrane protein complement(1951563..1951727) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253373 NP_460811.1 CDS sopE2 NC_003197.1 1952012 1952734 R SopE2; invasion-associated protein; secreted by SPI-1; interacts with chaperone InvB; guanine nucleotide exchange factor for Cdc42; activates Cdc42 which results in actin cytoskeleton rearrangements and internalization; guanine nucleotide exchange factor sopE2 complement(1952012..1952734) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253374 NP_460812.1 CDS STM1856 NC_003197.1 1953418 1953813 D cytoplasmic protein 1953418..1953813 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253375 NP_945162.1 CDS STM1856.1N NC_003197.1 1954143 1954619 D hypothetical protein 1954143..1954619 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673765 NP_460813.1 CDS STM1857 NC_003197.1 1955007 1955426 R acetyltransferase complement(1955007..1955426) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253376 NP_460814.1 CDS STM1858 NC_003197.1 1955796 1956065 D cytoplasmic protein 1955796..1956065 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253377 NP_460815.2 CDS STM1859 NC_003197.1 1956198 1956371 D cytoplasmic protein 1956198..1956371 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253378 NP_460818.1 CDS pagO NC_003197.1 1959507 1960421 D PagO protein (SW:PAGO_SALTY); PhoPQ-activated gene; integral membrane protein 1959507..1960421 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253381 NP_460819.1 CDS STM1863 NC_003197.1 1960554 1960712 D inner membrane protein 1960554..1960712 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253382 NP_460820.1 CDS STM1864 NC_003197.1 1960722 1961336 D inner membrane protein 1960722..1961336 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253383 NP_460822.1 CDS pagK NC_003197.1 1963179 1963379 D PhoPQ-activated gene; PhoPQ-activated protein 1963179..1963379 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253386 NP_460823.1 CDS mig-3 NC_003197.1 1963476 1964357 R phage tail assembly protein; phage-tail assembly-like protein complement(1963476..1964357) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253387 NP_945163.1 CDS STM1868.1N NC_003197.1 1964512 1964775 R hypothetical protein complement(1964512..1964775) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673772 NP_460824.1 CDS STM1868A NC_003197.1 1965083 1965250 D lytic enzyme 1965083..1965250 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253388 NP_460825.1 CDS STM1869 NC_003197.1 1965507 1966040 R phage-tail assembly-like protein complement(1965507..1966040) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253389 NP_460826.1 CDS STM1869A NC_003197.1 1966094 1966381 R hypothetical protein complement(1966094..1966381) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253390 NP_460827.1 CDS STM1870 NC_003197.1 1966514 1967008 D hypothetical protein 1966514..1967008 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253391 NP_460829.1 CDS STM1872 NC_003197.1 1968119 1968238 R cytoplasmic protein complement(1968119..1968238) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253393 NP_460830.1 CDS STM1873 NC_003197.1 1968296 1968649 R periplasmic protein; hypothetical protein complement(1968296..1968649) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253394 NP_460831.1 CDS STM1874 NC_003197.1 1968666 1969541 R inner membrane protein complement(1968666..1969541) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253395 NP_460832.1 CDS STM1875 NC_003197.1 1969542 1969916 R hypothetical protein complement(1969542..1969916) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253396 NP_460833.1 CDS holE NC_003197.1 1970054 1970284 D DNA polymerase III subunit theta 1970054..1970284 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253397 NP_460834.1 CDS STM1877 NC_003197.1 1970392 1971048 D amidohydrolase 1970392..1971048 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253398 NP_460835.1 CDS exoX NC_003197.1 1971072 1971770 D 3'-5' exonuclease activity on single or double-strand DNA; exodeoxyribonuclease X 1971072..1971770 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253399 NP_460836.1 CDS ptrB NC_003197.1 1971805 1973856 R PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; protease 2 complement(1971805..1973856) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253400 NP_460837.1 CDS yebE NC_003197.1 1974069 1974728 R inner membrane protein complement(1974069..1974728) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253401 NP_460838.1 CDS STM1881 NC_003197.1 1974822 1975175 R secreted protein; unknown function; hypothetical protein complement(1974822..1975175) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253402 NP_460839.1 CDS yebG NC_003197.1 1975243 1975533 R in SOS regulon; dependent on cyclic AMP and H-NS; DNA damage-inducible protein complement(1975243..1975533) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253403 NP_460840.1 CDS purT NC_003197.1 1975664 1976842 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1975664..1976842 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253404 NP_460841.1 CDS eda NC_003197.1 1976942 1977583 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(1976942..1977583) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253405 NP_460842.1 CDS edd NC_003197.1 1977621 1979432 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(1977621..1979432) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253406 NP_460843.1 CDS zwf NC_003197.1 1979667 1981142 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(1979667..1981142) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253407 NP_460844.1 CDS yebK NC_003197.1 1981484 1982353 D Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 1981484..1982353 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253408 NP_460845.1 CDS pykA NC_003197.1 1982477 1983919 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1982477..1983919 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253409 NP_460846.1 CDS msbB NC_003197.1 1983992 1984963 R Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; myristoyl (ACP)-dependent acyltransferase complement(1983992..1984963) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253410 NP_460847.1 CDS yebA NC_003197.1 1985080 1986399 R murein DD-endopeptidase complement(1985080..1986399) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253411 NP_460848.2 CDS znuA NC_003197.1 1986415 1987359 R involved in transport of zinc(II) with ZnuA and C; zinc ABC transporter substrate-binding protein ZnuA complement(1986415..1987359) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253412 NP_460849.2 CDS znuC NC_003197.1 1987438 1988193 D involved in transport of zinc(II) with ZnuA and C; zinc ABC transporter ATP-binding protein ZnuC 1987438..1988193 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253413 NP_460850.1 CDS znuB NC_003197.1 1988190 1988975 D involved in transport of zinc(II) with ZnuA and C; zinc ABC transporter permease ZnuB 1988190..1988975 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253414 NP_460851.1 CDS ruvB NC_003197.1 1989054 1990064 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction ATP-dependent DNA helicase RuvB complement(1989054..1990064) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253415 NP_460852.1 CDS ruvA NC_003197.1 1990073 1990684 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction ATP-dependent DNA helicase RuvA complement(1990073..1990684) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253416 NP_460853.1 CDS STM1896 NC_003197.1 1991104 1992000 D cytoplasmic protein 1991104..1992000 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253417 NP_460854.1 CDS yebB NC_003197.1 1992627 1993226 D periplasmic protein 1992627..1993226 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253418 NP_460855.1 CDS ruvC NC_003197.1 1993228 1993749 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; crossover junction endodeoxyribonuclease RuvC complement(1993228..1993749) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253419 NP_460856.1 CDS yebC NC_003197.1 1993786 1994526 R transcriptional regulator complement(1993786..1994526) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253420 NP_460857.1 CDS ntpA NC_003197.1 1994556 1995008 R converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase complement(1994556..1995008) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253421 NP_460858.1 CDS aspS NC_003197.1 1995111 1996883 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartate--tRNA ligase complement(1995111..1996883) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253422 NP_460859.1 CDS yecD NC_003197.1 1997208 1997774 D isochorismatase 1997208..1997774 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253423 NP_460860.1 CDS yecE NC_003197.1 1997771 1998589 D cytoplasmic protein 1997771..1998589 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253424 NP_460861.1 CDS yecN NC_003197.1 1998642 1999037 D inner membrane protein 1998642..1999037 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253425 NP_460862.1 CDS yecO NC_003197.1 1999078 1999821 D tRNA (cmo5U34)-methyltransferase 1999078..1999821 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253426 NP_460863.1 CDS yecP NC_003197.1 1999818 2000789 D tRNA (mo5U34)-methyltransferase 1999818..2000789 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253427 NP_460864.1 CDS cutC NC_003197.1 2001025 2001771 R copper homeostasis protein CutC complement(2001025..2001771) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253428 NP_460865.1 CDS yecM NC_003197.1 2001791 2002360 R cytoplasmic protein complement(2001791..2002360) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253429 NP_460866.1 CDS argS NC_003197.1 2002597 2004330 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginine--tRNA ligase 2002597..2004330 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253430 NP_460867.1 CDS STM1910 NC_003197.1 2004519 2006390 D penicillin-binding protein 2; PBP-2 (SW:PBP2_SALTY); penicillin-binding protein 2004519..2006390 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253431 NP_460868.1 CDS STM1911 NC_003197.1 2006444 2007583 R cytoplasmic protein complement(2006444..2007583) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253432 NP_460869.1 CDS flhE NC_003197.1 2007820 2008212 R flagellar protein FlhE (SW:FLHE_SALTY); flagellar protein FlhE complement(2007820..2008212) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253433 NP_460870.1 CDS flhA NC_003197.1 2008212 2010290 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(2008212..2010290) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253434 NP_460871.1 CDS flhB NC_003197.1 2010283 2011434 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(2010283..2011434) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253435 NP_460872.1 CDS cheZ NC_003197.1 2011628 2012272 R cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; protein phosphatase CheZ complement(2011628..2012272) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253436 NP_460873.1 CDS cheY NC_003197.1 2012283 2012672 R chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; chemotaxis regulatory protein CheY complement(2012283..2012672) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253437 NP_460874.1 CDS cheB NC_003197.1 2012690 2013739 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis response regulator protein-glutamate methylesterase complement(2012690..2013739) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253438 NP_460875.1 CDS cheR NC_003197.1 2013736 2014602 R methylates the MCP; chemotaxis protein methyltransferase complement(2013736..2014602) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253439 NP_460876.1 CDS cheM NC_003197.1 2014756 2016417 R methyl-accepting chemotaxis protein II; MCP-II (SW:MCP2_SALTY); aspartate sensor-receptor; methyl accepting chemotaxis protein II complement(2014756..2016417) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253440 NP_460877.1 CDS cheW NC_003197.1 2016654 2017157 R chemotaxis protein CheW (SW:CHEW_SALTY); regulation; couples CheA histidine kinase to transducers; chemotaxis protein CheW complement(2016654..2017157) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253441 NP_460878.1 CDS cheA NC_003197.1 2017178 2019193 R chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component; chemotaxis protein CheA complement(2017178..2019193) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253442 NP_460879.1 CDS motB NC_003197.1 2019198 2020127 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; motility protein B complement(2019198..2020127) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253443 NP_460880.1 CDS motA NC_003197.1 2020124 2021011 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; motility protein protein A complement(2020124..2021011) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253444 NP_460881.2 CDS flhC NC_003197.1 2021136 2021714 R With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional regulator FlhC complement(2021136..2021714) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253445 NP_460882.1 CDS flhD NC_003197.1 2021717 2022067 R with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional regulator FlhD complement(2021717..2022067) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253446 NP_460884.1 CDS yecG NC_003197.1 2022854 2023282 D ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein C 2022854..2023282 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253448 NP_460885.1 CDS otsA NC_003197.1 2023300 2024721 R alpha,alpha-trehalose-phosphate synthase complement(2023300..2024721) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253449 NP_460886.1 CDS otsB NC_003197.1 2024696 2025499 R biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature; trehalose-phosphate phosphatase complement(2024696..2025499) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253450 NP_460887.1 CDS araH NC_003197.1 2026132 2026689 R intracellular protease/amidase complement(2026132..2026689) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253452 NP_460888.1 CDS ftnB NC_003197.1 2027240 2027743 D ferritin-like protein 2027240..2027743 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253453 NP_460889.1 CDS STM1933 NC_003197.1 2027922 2028560 R hypothetical protein complement(2027922..2028560) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253454 NP_460890.1 CDS STM1934 NC_003197.1 2028816 2029151 D outer membrane lipoprotein 2028816..2029151 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253455 NP_460891.1 CDS ftn NC_003197.1 2029391 2029888 D cytoplasmic iron storage protein; ferritin 2029391..2029888 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253456 NP_460892.1 CDS yecH NC_003197.1 2029934 2030173 R cytoplasmic protein complement(2029934..2030173) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253457 NP_460893.1 CDS tyrP NC_003197.1 2030400 2031611 D HAAAP family tyrosine-specific transport protein 2030400..2031611 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253458 NP_460894.1 CDS yecA NC_003197.1 2031686 2032351 R metal-binding protein complement(2031686..2032351) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253459 NP_460895.1 CDS STM1939 NC_003197.1 2032589 2032915 R glucose-6-phosphate dehydrogenase complement(2032589..2032915) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253460 NP_460896.1 CDS STM1940 NC_003197.1 2033128 2034567 R cell wall-associated hydrolase complement(2033128..2034567) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253461 NP_460897.1 CDS STM1941 NC_003197.1 2034780 2035112 R inner membrane protein complement(2034780..2035112) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253462 NP_460898.1 CDS pgsA NC_003197.1 2035813 2036361 R CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(2035813..2036361) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253466 NP_460899.1 CDS uvrC NC_003197.1 2036418 2038250 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(2036418..2038250) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253467 NP_460900.1 CDS uvrY NC_003197.1 2038247 2038903 R in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; LuxR/UhpA family response regulator complement(2038247..2038903) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253468 NP_460902.1 CDS yecF NC_003197.1 2039367 2039591 D cytoplasmic protein 2039367..2039591 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253470 NP_460903.1 CDS sdiA NC_003197.1 2039658 2040380 R regulates genes involved in cell division; ftsQAZ ranscriptional regulator complement(2039658..2040380) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253471 NP_460904.1 CDS yecC NC_003197.1 2040612 2041364 R amino-acid ABC transporter ATP-binding protein complement(2040612..2041364) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253472 NP_460905.1 CDS yecS NC_003197.1 2041361 2042029 R amino acid ABC transporter permease complement(2041361..2042029) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253473 NP_460906.1 CDS yedO NC_003197.1 2042050 2043036 R catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase complement(2042050..2043036) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253474 NP_460907.1 CDS fliY NC_003197.1 2043190 2043990 R amino-acid ABC transporter substrate-binding protein complement(2043190..2043990) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253475 NP_460908.1 CDS fliZ NC_003197.1 2044137 2044688 R expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasion genes necessary to achieve full virulence; flagella biosynthesis protein FliZ complement(2044137..2044688) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253476 NP_460909.1 CDS fliA NC_003197.1 2044747 2045466 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; RNA polymerase sigma factor FliA complement(2044747..2045466) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253477 NP_460910.2 CDS tnpA_2 NC_003197.1 2045735 2046244 R transposase for insertion sequence element is200 (SW:T200_SALTY); insertion sequence element IS200 transposase complement(2045735..2046244) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253478 NP_460911.1 CDS fliB NC_003197.1 2046374 2047579 R N-methylation of lysine residues in flagellin (SW:FLIB_SALTY); lysine-N-methylase complement(2046374..2047579) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253479 NP_460912.1 CDS fliC NC_003197.1 2047658 2049145 R structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; flagellin complement(2047658..2049145) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253480 NP_460913.1 CDS fliD NC_003197.1 2049402 2050805 D involved in flagellin assembly; flagellar hook-associated protein 2 2049402..2050805 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253481 NP_460914.1 CDS fliS NC_003197.1 2050820 2051227 D flagellin specific chaperone; flagellar protein FliS 2050820..2051227 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253482 NP_460915.1 CDS fliT NC_003197.1 2051227 2051595 D binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family; flagellar protein FliT 2051227..2051595 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253483 NP_460916.1 CDS amyA NC_003197.1 2051667 2053151 D converts 1,4-alpha-D-glucans to maltodextrin; cytoplasmic alpha-amylase 2051667..2053151 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253484 NP_460917.1 CDS yedD NC_003197.1 2053191 2053616 R 15.5 kDa protein in amyA-fliE intergenic region (SW:YEDD_SALTY); lipoprotein complement(2053191..2053616) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253485 NP_460918.2 CDS yedE NC_003197.1 2053802 2055007 D hypothetical 44.2 kDa protein in amyA-fliE intergenic region (SW:YEDE_SALTY); component of transport system; inner membrane protein 2053802..2055007 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253486 NP_460919.1 CDS STM1966 NC_003197.1 2055004 2055237 D hypothetical 8.6 kDa protein in amyA-fliE intergenic region; ORF 9 (SW:YEDF_ECOLI); hypothetical protein 2055004..2055237 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253487 YP_006892397.1 CDS STM05320 NC_003197.1 2055502 2055888 D hypothetical protein 2055502..2055888 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865721 NP_460921.1 CDS fliE NC_003197.1 2056008 2056322 R forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body complex protein FliE complement(2056008..2056322) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253489 NP_460922.1 CDS fliF NC_003197.1 2056539 2058221 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein FliF 2056539..2058221 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253490 NP_460923.1 CDS fliG NC_003197.1 2058214 2059209 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliG 2058214..2059209 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253491 NP_460924.1 CDS fliH NC_003197.1 2059202 2059909 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein FliH 2059202..2059909 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253492 NP_460925.1 CDS fliI NC_003197.1 2059909 2061279 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase FliI 2059909..2061279 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253493 NP_460926.1 CDS fliJ NC_003197.1 2061301 2061744 D rod/hook and filament chaperone; flagellar protein FliJ 2061301..2061744 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253494 NP_460927.1 CDS fliK NC_003197.1 2061741 2062958 D flagellar hook-length control protein (SW:FLIK_SALTY); flagellar hook-length control protein FliK 2061741..2062958 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253495 NP_460928.1 CDS fliL NC_003197.1 2063063 2063530 D interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 2063063..2063530 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253496 NP_460929.1 CDS fliM NC_003197.1 2063535 2064539 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 2063535..2064539 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253497 NP_460930.1 CDS fliN NC_003197.1 2064536 2064949 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliN 2064536..2064949 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253498 NP_460931.2 CDS fliO NC_003197.1 2064952 2065326 D with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus; flagellar biosynthesis protein FliO 2064952..2065326 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253499 NP_460932.1 CDS fliP NC_003197.1 2065326 2066063 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 2065326..2066063 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253500 NP_460933.1 CDS fliQ NC_003197.1 2066073 2066342 D with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 2066073..2066342 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253501 NP_460934.1 CDS fliR NC_003197.1 2066351 2067145 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 2066351..2067145 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253502 NP_460935.1 CDS rcsA NC_003197.1 2067427 2068050 D positive transcriptional regulator of capsular/exo-polysaccharide synthesis; LuxR/UhpA family (SW:RCSA_SALTY); transcriptional regulator RcsA 2067427..2068050 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253503 NP_951051.1 CDS dsrB NC_003197.1 2068089 2068283 R downstream region B; regulated by DsrA and HNS, under control of RpoS; protein DsrB complement(2068089..2068283) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253504 NP_460936.1 CDS yodD NC_003197.1 2068412 2068639 D cytoplasmic protein 2068412..2068639 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253505 NP_460937.1 CDS yedP NC_003197.1 2068949 2069764 D catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 2068949..2069764 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253507 NP_460938.1 CDS STM1987 NC_003197.1 2069743 2071455 R inner membrane protein complement(2069743..2071455) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253508 NP_460939.2 CDS STM1988.S NC_003197.1 2071620 2071838 R hypothetical protein complement(2071620..2071838) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253509 NP_460940.1 CDS yedI NC_003197.1 2071882 2072793 R inner membrane protein complement(2071882..2072793) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253510 NP_460941.1 CDS yedA NC_003197.1 2072969 2073889 D amino acid exporter 2072969..2073889 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253511 NP_460942.1 CDS vsr NC_003197.1 2073878 2074348 R DNA mismatch endonuclease complement(2073878..2074348) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253512 NP_460943.1 CDS dcm NC_003197.1 2074329 2075759 R DNA cytosine methylase complement(2074329..2075759) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253513 NP_460944.1 CDS yedJ NC_003197.1 2075833 2076528 R hydrolase complement(2075833..2076528) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253514 NP_460945.1 CDS STM1994 NC_003197.1 2076620 2076919 R inner membrane protein complement(2076620..2076919) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253515 NP_460946.1 CDS ompS NC_003197.1 2077569 2078765 D porin 2077569..2078765 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253516 NP_460947.1 CDS cspB NC_003197.1 2079225 2079437 R cold-shock protein complement(2079225..2079437) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253517 NP_460948.1 CDS umuC NC_003197.1 2079892 2081160 R binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC complement(2079892..2081160) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253518 NP_460949.1 CDS umuD NC_003197.1 2081163 2081582 R binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuD complement(2081163..2081582) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253519 NP_460950.1 CDS STM1999 NC_003197.1 2081709 2081870 R cytoplasmic protein complement(2081709..2081870) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253520 NP_460951.1 CDS mtfA NC_003197.1 2082351 2083148 D Mlc titration factor A 2082351..2083148 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253522 NP_460952.1 CDS STM2005 NC_003197.1 2084458 2084931 D endoprotease 2084458..2084931 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253526 NP_460954.1 CDS STM2007 NC_003197.1 2086921 2088615 D contains TPR repeats; hypothetical protein 2086921..2088615 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253528 NP_460955.1 CDS STM2008 NC_003197.1 2088672 2090402 D periplasmic protein 2088672..2090402 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253529 YP_006892398.1 CDS STM05350 NC_003197.1 2090612 2090785 D hypothetical protein 2090612..2090785 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865705 NP_460956.1 CDS amn NC_003197.1 2091307 2092761 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(2091307..2092761) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253530 NP_460958.1 CDS STM2011 NC_003197.1 2092957 2093283 R cytoplasmic protein complement(2092957..2093283) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253532 NP_951052.1 CDS STM2011.1n NC_003197.1 2093989 2094156 D hypothetical protein 2093989..2094156 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673719 NP_460959.1 CDS yeeO NC_003197.1 2094377 2095834 R MATE family; MATE family transport protein complement(2094377..2095834) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253534 NP_460960.1 CDS erfK NC_003197.1 2096296 2097225 R L,D-transpeptidase ErfK/SrfK complement(2096296..2097225) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253536 NP_460961.1 CDS cobT NC_003197.1 2097303 2098373 R catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(2097303..2098373) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253537 NP_460962.1 CDS cobS NC_003197.1 2098400 2099143 R catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase complement(2098400..2099143) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253538 NP_460963.1 CDS cobU NC_003197.1 2099140 2099685 R catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase complement(2099140..2099685) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253539 NP_460964.1 CDS cbiP NC_003197.1 2099682 2101202 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(2099682..2101202) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253540 NP_460965.1 CDS cbiO NC_003197.1 2101199 2102014 R with CbiNQ forms the ABC transporter for cobalt import; cobalt ABC transporter ATP-binding protein CbiO complement(2101199..2102014) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253541 NP_460966.1 CDS cbiQ NC_003197.1 2102023 2102700 R cobalt transport protein CbiQ (SW:CBIQ_SALTY); cobalt ABC transporter permease CbiQ complement(2102023..2102700) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253542 NP_460967.1 CDS cbiN NC_003197.1 2102687 2102968 R periplasmic cobalt binding component of the cobalt transport system; cobalt ABC transporter substrate-binding protein CbiN complement(2102687..2102968) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253543 NP_460968.2 CDS cbiM NC_003197.1 2102970 2103617 R catalyzes the ATP-dependent transport of cobalt; cobalt ABC transporter substrate-binding protein CbiM complement(2102970..2103617) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253544 NP_460969.1 CDS cbiL NC_003197.1 2103704 2104417 R catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase complement(2103704..2104417) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253545 NP_460970.1 CDS cbiK NC_003197.1 2104414 2105208 R cobalt chelatase (SW:CBIK_SALTY); sirohydrochlorin cobaltochelatase complement(2104414..2105208) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253546 NP_460971.1 CDS cbiJ NC_003197.1 2105211 2106002 R CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase complement(2105211..2106002) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253547 NP_460972.1 CDS cbiH NC_003197.1 2105999 2106724 R catalyzes the formation of precorrin-4 from precorrin-3B and S-adenosyl-L-methionine; precorrin-3B C(17)-methyltransferase complement(2105999..2106724) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253548 NP_460973.1 CDS cbiG NC_003197.1 2106724 2107779 R catalyzes the formation of cobalt-precorrin 5B from cobalt-precorrin 5A; protein characterization on unidentifed S. typhimurium strain PMID:16866557; cobalt-precorrin 5A hydrolase complement(2106724..2107779) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253549 NP_460974.1 CDS cbiF NC_003197.1 2107760 2108533 R precorrin-4 C11-methyltransferase complement(2107760..2108533) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253550 NP_460975.1 CDS cbiT NC_003197.1 2108517 2109095 R catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating; cobalt-precorrin-6Y C(15)-methyltransferase complement(2108517..2109095) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253551 NP_460976.1 CDS cbiE NC_003197.1 2109085 2109690 R catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a; cobalt-precorrin-6Y C(5)-methyltransferase complement(2109085..2109690) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253552 NP_460977.1 CDS cbiD NC_003197.1 2109684 2110823 R Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase complement(2109684..2110823) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253553 NP_460978.1 CDS cbiC NC_003197.1 2110823 2111455 R catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin; cobalt-precorrin-8X methylmutase complement(2110823..2111455) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253554 NP_460979.1 CDS cbiB NC_003197.1 2111466 2112425 R CobD; CbiB in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; adenosylcobinamide-phosphate synthase complement(2111466..2112425) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253555 NP_460980.1 CDS cbiA NC_003197.1 2112422 2113801 R responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase complement(2112422..2113801) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253556 NP_460981.1 CDS pocR NC_003197.1 2114399 2115310 R regulatory protein PocR (SW:POCR_SALTY); propanediol utilization protein; AraC family; transcriptional regulator PocR complement(2114399..2115310) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253557 NP_460982.1 CDS pduF NC_003197.1 2115527 2116321 R propanediol diffusion facilitator (SW:PDUF_SALTY); propanediol utilization protein; propanediol diffusion facilitator complement(2115527..2116321) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253558 NP_460983.1 CDS pduA NC_003197.1 2116846 2117130 D propanediol utilization protein PduA (SW:PDUA_SALTY); propanediol utilization protein; propanediol utilization polyhedral body protein PduA 2116846..2117130 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253559 NP_460984.2 CDS pduB NC_003197.1 2117127 2117939 D propanediol utilization protein PduB (SW:PDUB_SALTY); propanediol utilization protein; propanediol utilization polyhedral body protein PduB 2117127..2117939 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253560 NP_460985.1 CDS pduC NC_003197.1 2117958 2119622 D glycerol dehydratase large subunit (SW:DHAB_SALTY); propanediol utilization protein; propanediol dehydratase large subunit 2117958..2119622 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253561 NP_460986.1 CDS pduD NC_003197.1 2119633 2120307 D propanediol utilization protein; propanediol dehydratase medium subunit 2119633..2120307 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253562 NP_460987.1 CDS pduE NC_003197.1 2120322 2120843 D propanediol utilization protein; propanediol dehydratase small subunit 2120322..2120843 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253563 NP_460988.1 CDS pduG NC_003197.1 2120853 2122685 D propanediol utilization protein; propanediol dehydratase reactivation protein 2120853..2122685 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253564 NP_460989.1 CDS pduH NC_003197.1 2122675 2123025 D propanediol utilization protein; propanediol dehydratase reactivation protein 2122675..2123025 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253565 NP_460990.1 CDS pduJ NC_003197.1 2123044 2123319 D propanediol utilization polyhedral body protein PduJ 2123044..2123319 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253566 NP_460991.2 CDS pduK NC_003197.1 2123344 2123805 D propanediol utilization polyhedral body protein PduK 2123344..2123805 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253567 NP_460992.1 CDS pduL NC_003197.1 2123805 2124437 D phosphate propanoyltransferase 2123805..2124437 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253568 NP_460993.1 CDS pduM NC_003197.1 2124434 2124925 D propanediol utilization protein PduM 2124434..2124925 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253569 NP_460994.1 CDS pduN NC_003197.1 2124929 2125204 D propanediol utilization polyhedral body protein PduN 2124929..2125204 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253570 NP_460995.1 CDS pduO NC_003197.1 2125214 2126224 D related to B12-dependent glycerol dehydratase; propanediol utilization protein PduO 2125214..2126224 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253571 NP_460996.1 CDS pduP NC_003197.1 2126221 2127615 D CoA-dependent propionaldehyde dehydrogenase 2126221..2127615 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253572 NP_460997.1 CDS pduQ NC_003197.1 2127627 2128739 D propanol dehydrogenase 2127627..2128739 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253573 NP_460998.1 CDS pduS NC_003197.1 2128736 2130091 D propanediol utilization polyhedral body protein PduS 2128736..2130091 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253574 NP_460999.1 CDS pduT NC_003197.1 2130094 2130648 D propanediol utilization polyhedral body protein PduT 2130094..2130648 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253575 NP_461000.1 CDS pduU NC_003197.1 2130648 2130998 D propanediol utilization protein PduU (SW:PDUU_SALTY); propanediol utilization protein; propanediol utilization polyhedral body protein PduU 2130648..2130998 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253576 NP_461001.1 CDS pduV NC_003197.1 2131003 2131455 D propanediol utilization protein PduV (SW:PDUV_SALTY); propanediol utilization protein PduV 2131003..2131455 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253577 NP_461002.1 CDS pduW NC_003197.1 2131440 2132654 D involved in coenzyme B(12)-dependent 1, 2-propanediol degradation; important for the synthesis of propionyl coenzyme A during growth on 1,2-propanediol; propionate kinase 2131440..2132654 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253578 NP_461003.1 CDS pduX NC_003197.1 2132712 2133614 D Propanediol utilization protein PduX; L-threonine kinase 2132712..2133614 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253579 NP_461004.1 CDS STM2059 NC_003197.1 2133648 2133983 R hypothetical protein complement(2133648..2133983) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253580 NP_461005.1 CDS yeeA NC_003197.1 2134228 2135286 R inner membrane protein complement(2134228..2135286) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253581 NP_461006.1 CDS sbmC NC_003197.1 2135405 2135872 R DNA gyrase inhibitor complement(2135405..2135872) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253582 NP_461007.1 CDS dacD NC_003197.1 2136025 2137197 R removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase DacD complement(2136025..2137197) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253583 NP_461008.1 CDS phsC NC_003197.1 2137321 2138085 R membrane-anchoring protein (SW:PHSC_SALTY); hydrogen sulfide production; thiosulfate reductase cytochrome B subunit complement(2137321..2138085) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253584 NP_461009.1 CDS phsB NC_003197.1 2138082 2138660 R PhsB (SW:PHSB_SALTY); hydrogen sulfide production; iron-sulfur subunit; electron transfer; thiosulfate reductase electron transport protein PhsB complement(2138082..2138660) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253585 NP_461010.1 CDS phsA NC_003197.1 2138675 2140951 R membrane-anchoring protein (SW:PHSA_SALTY); hydrogen sulfide production; thiosulfate reductase complement(2138675..2140951) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253586 NP_461011.1 CDS sopA NC_003197.1 2141570 2143918 D E3 ubiquitin-protein ligase SopA 2141570..2143918 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253587 NP_461012.1 CDS sbcB NC_003197.1 2144261 2145691 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2144261..2145691 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253588 NP_461013.1 CDS yeeF NC_003197.1 2145827 2147191 R amino acid transport protein complement(2145827..2147191) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253589 NP_461014.1 CDS yeeY NC_003197.1 2147471 2148385 R LysR family transcriptional regulator complement(2147471..2148385) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253590 NP_461015.1 CDS yeeZ NC_003197.1 2148431 2149255 R dehydratase complement(2148431..2149255) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253591 NP_461016.1 CDS hisG NC_003197.1 2149615 2150514 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2149615..2150514 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253592 NP_461017.1 CDS hisD NC_003197.1 2150617 2151921 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2150617..2151921 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253593 NP_461018.1 CDS hisC NC_003197.1 2151918 2152997 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2151918..2152997 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253594 NP_461019.1 CDS hisB NC_003197.1 2152994 2154061 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2152994..2154061 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253595 NP_461020.2 CDS hisH NC_003197.1 2154061 2154651 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2154061..2154651 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253596 NP_461021.1 CDS hisA NC_003197.1 2154651 2155388 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2154651..2155388 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253597 NP_461022.1 CDS hisF NC_003197.1 2155370 2156146 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2155370..2156146 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253598 NP_461023.1 CDS hisI NC_003197.1 2156140 2156751 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2156140..2156751 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253599 NP_461024.1 CDS wzzB NC_003197.1 2156832 2157815 R chain length determinant protein; polysaccharide antigen chainregulator (SW:WZZB_SALTY); regulator of length of O-antigen component of lipopolysaccharide chains; chain length determinant protein complement(2156832..2157815) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253600 NP_461025.1 CDS udg NC_003197.1 2157958 2159124 R UDP-glucose 6-dehydrogenase (SW:UDG_SALTY); UDP-glucose 6-dehydrogenase complement(2157958..2159124) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253601 NP_461026.1 CDS gnd NC_003197.1 2159361 2160767 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(2159361..2160767) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253602 NP_461027.1 CDS rfbP NC_003197.1 2160931 2162361 R undecaprenyl-phosphate galactosephosphotransferase (SW:RFBP_SALTY); mutation results in LPS side chain defect; undecaprenyl-phosphate galactose phosphotransferase complement(2160931..2162361) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253603 NP_461028.1 CDS rfbK NC_003197.1 2162433 2163866 R phosphomannomutase (SW:RFBK_SALTY); LPS side chain defect; phosphomannomutase complement(2162433..2163866) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253604 NP_461029.1 CDS rfbM NC_003197.1 2163853 2165292 R mannose-1-phosphate guanylyltransferase GDP (SW:RFBM_SALTY); LPS side chain defect; mannose-1-phosphate guanylyltransferase complement(2163853..2165292) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253605 NP_461030.1 CDS rfbN NC_003197.1 2165293 2166237 R rhamnosyltransferase RfbN (SW:RFBN_SALTY); LPS side chain defect; O antigen biosynthesis rhamnosyltransferase RfbN complement(2165293..2166237) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253606 NP_461031.1 CDS rfbU NC_003197.1 2166238 2167299 R RFBU protein (SW:RFBU_SALTY); LPS side chain defect; O-antigen biosynthesis protein RfbU complement(2166238..2167299) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253607 NP_461032.1 CDS rfbV NC_003197.1 2167619 2168620 R RFBV protein (SW:RFBV_SALTY); LPS side chain defect; abequosyltransferase RfbV complement(2167619..2168620) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253608 NP_461033.1 CDS rfbX NC_003197.1 2168625 2169917 R O-antigen transporter (SW:RFBX_SALTY); LPS side chain defect; O-antigen transferase complement(2168625..2169917) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253609 NP_461034.1 CDS rfbJ NC_003197.1 2169999 2170898 R CDP-abequose synthase (SW:RFBJ_SALTY); LPS side chain defect; CDP-abequose synthase complement(2169999..2170898) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253610 NP_461035.1 CDS rfbH NC_003197.1 2170926 2172239 R lipopolysaccharide biosynthesis protein RfbH (SW:RFBH_SALTY); LPS side chain defect; lipopolysaccharide biosynthesis protein RfbH complement(2170926..2172239) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253611 NP_461036.1 CDS rfbG NC_003197.1 2172266 2173345 R CDP-glucose 4,6-dehydratase (SW:RFBG_SALTY); LPS side chain defect; CDP glucose 4,6-dehydratase complement(2172266..2173345) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253612 NP_461037.1 CDS rfbF NC_003197.1 2173350 2174123 R glucose-1-phosphate cytidylyltransferase (SW:RFBF_SALTY); LPS side chain defect; glucose-1-phosphate cytidylyltransferase complement(2173350..2174123) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253613 NP_461038.1 CDS rfbI NC_003197.1 2174120 2175112 R catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase complement(2174120..2175112) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253614 NP_461039.1 CDS rfbC NC_003197.1 2175118 2175669 R DTDP-4-dehydrorhamnose 3,5-epimerase (SW:RFBC_SALTY); dTDP-4-deoxyrhamnose 3,5 epimerase complement(2175118..2175669) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253615 NP_461040.1 CDS rfbA NC_003197.1 2175670 2176548 R glucose-1-phosphate thymidylyltransferase complement(2175670..2176548) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253616 NP_461041.1 CDS rfbD NC_003197.1 2176596 2177495 R with dTDP-4-dehydrorhamnose 3,5-epimerase forms a complex known as dTDP-L-rhamnose synthetase; catalyzes the reduction of dTDP-4-dehydro-6-deoxy-L-mannose to dTDP-L-rhamnose; dTDP-4-dehydrorhamnose reductase complement(2176596..2177495) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253617 NP_461042.1 CDS rfbB NC_003197.1 2177495 2178580 R NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose-4,6-dehydratase complement(2177495..2178580) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253618 NP_461043.1 CDS galF NC_003197.1 2178957 2179850 R together with GalU subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP--glucose-1-phosphate uridylyltransferase subunit GalF complement(2178957..2179850) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253619 NP_461044.1 CDS wcaM NC_003197.1 2180028 2181431 R WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; colanic acid biosynthesis protein WcaM complement(2180028..2181431) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253620 NP_461045.1 CDS wcaL NC_003197.1 2181442 2182662 R in colanic acid biosynthesis gene cluster; colanic acid biosynthesis glycosyltransferase WcaL complement(2181442..2182662) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253621 NP_461046.1 CDS wcaK NC_003197.1 2182659 2183939 R pyruvyl transferase complement(2182659..2183939) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253622 NP_461047.1 CDS wzxC NC_003197.1 2183961 2185439 R colanic acid exporter complement(2183961..2185439) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253623 NP_461048.1 CDS wcaJ NC_003197.1 2185572 2186966 R WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid; UDP-glucose lipid carrier transferase complement(2185572..2186966) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253624 NP_461049.1 CDS cpsG NC_003197.1 2187020 2188390 R phosphomannomutase in colanic acid gene cluster (SW:MANB_SALTY); phosphomannomutase complement(2187020..2188390) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253625 NP_461050.2 CDS manC NC_003197.1 2188501 2189937 R mannose-1-phosphate guanylyltransferase; GDP (SW:MANC_SALTY); in colanic acid gene cluster; mannose-1-phosphate guanylyltransferase complement(2188501..2189937) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253626 NP_461051.1 CDS wcaI NC_003197.1 2189940 2191163 R glycosyl transferase complement(2189940..2191163) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253627 NP_461052.1 CDS wcaH NC_003197.1 2191160 2191663 R GDP-mannose mannosyl hydrolase complement(2191160..2191663) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253628 NP_461053.1 CDS wcaG NC_003197.1 2191635 2192600 R GDP-fucose synthetase complement(2191635..2192600) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253629 NP_461054.1 CDS gmd NC_003197.1 2192603 2193724 R GDP-D-mannose dehydratase complement(2192603..2193724) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253630 NP_461055.1 CDS wcaF NC_003197.1 2193748 2194302 R acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); colanic acid biosynthesis acetyltransferase WcaF complement(2193748..2194302) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253631 NP_461056.1 CDS wcaE NC_003197.1 2194318 2195064 R glycosyl transferase family protein complement(2194318..2195064) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253632 NP_461057.1 CDS wcaD NC_003197.1 2195077 2196291 R essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; colanic acid polymerase complement(2195077..2196291) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253633 NP_461058.1 CDS wcaC NC_003197.1 2196266 2197483 R glycosyl transferase complement(2196266..2197483) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253634 NP_461059.1 CDS wcaB NC_003197.1 2197480 2197968 R acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium; colanic acid biosynthesis acetyltransferase WcaB complement(2197480..2197968) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253635 NP_461060.1 CDS wcaA NC_003197.1 2197971 2198813 R glycosyl transferase complement(2197971..2198813) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253636 NP_461061.1 CDS wzc NC_003197.1 2198900 2201059 R Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); tyrosine-protein kinase complement(2198900..2201059) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253637 NP_461062.1 CDS wzb NC_003197.1 2201056 2201505 R Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis; protein-tyrosine-phosphatase complement(2201056..2201505) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253638 NP_461063.1 CDS wza NC_003197.1 2201511 2202650 R polysaccharide export protein complement(2201511..2202650) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253639 NP_461064.1 CDS yegH NC_003197.1 2203325 2204905 D inner membrane protein 2203325..2204905 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253640 NP_461065.1 CDS asmA NC_003197.1 2204991 2206847 R YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs; assembly protein complement(2204991..2206847) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253641 NP_461066.1 CDS dcd NC_003197.1 2206886 2207467 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(2206886..2207467) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253642 NP_461067.1 CDS udk NC_003197.1 2207558 2208199 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(2207558..2208199) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253643 NP_461068.1 CDS yegE NC_003197.1 2208530 2211520 D diguanylate cyclase/phosphodiesterase 2208530..2211520 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253644 NP_461069.1 CDS alkA NC_003197.1 2211488 2212357 R inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine; 3-methyl-adenine DNA glycosylase II complement(2211488..2212357) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253645 NP_461070.1 CDS yegD NC_003197.1 2212491 2213843 D chaperone 2212491..2213843 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253646 NP_461071.1 CDS STM2126 NC_003197.1 2214284 2215525 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug resistance protein MdtA 2214284..2215525 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253647 NP_461072.1 CDS yegN NC_003197.1 2215525 2218647 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug resistance protein MdtB 2215525..2218647 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253648 NP_461073.1 CDS yegO NC_003197.1 2218648 2221728 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate; multidrug resistance protein MdtC 2218648..2221728 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253649 NP_461074.1 CDS yegB NC_003197.1 2221725 2223137 D multidrug resistance protein MdtE 2221725..2223137 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253650 NP_461075.1 CDS baeS NC_003197.1 2223137 2224540 D sensory kinase BaeS 2223137..2224540 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253651 NP_461076.1 CDS baeR NC_003197.1 2224537 2225259 D response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport; response regulator BaeR 2224537..2225259 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253652 NP_461077.1 CDS STM2133 NC_003197.1 2225846 2226730 D cytoplasmic protein 2225846..2226730 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253654 NP_461078.1 CDS STM2134 NC_003197.1 2226730 2227446 D inner membrane protein 2226730..2227446 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253655 NP_461079.1 CDS STM2135 NC_003197.1 2227457 2229568 D inner membrane protein 2227457..2229568 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253656 NP_461080.1 CDS yegQ NC_003197.1 2229684 2231045 D protease 2229684..2231045 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253657 NP_461081.1 CDS STM2137 NC_003197.1 2231496 2232542 D cytoplasmic protein 2231496..2232542 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253658 NP_461082.1 CDS STM2138 NC_003197.1 2232578 2232994 R cytoplasmic protein complement(2232578..2232994) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253659 NP_461083.1 CDS STM2139 NC_003197.1 2233116 2233451 R inner membrane protein complement(2233116..2233451) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253660 NP_945164.1 CDS STM2139.2n NC_003197.1 2233813 2233929 R hypothetical protein complement(2233813..2233929) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673733 NP_461084.1 CDS yegS NC_003197.1 2234013 2234912 D cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 2234013..2234912 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253661 NP_461085.1 CDS fbaB NC_003197.1 2234965 2236017 R catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase complement(2234965..2236017) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253662 NP_461086.1 CDS yegT NC_003197.1 2236271 2237542 D MFS family transport protein 2236271..2237542 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253663 NP_461087.1 CDS yegU NC_003197.1 2237539 2238543 D glycohydrolase 2237539..2238543 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253664 NP_461088.1 CDS yegV NC_003197.1 2238540 2239505 D sugar kinase 2238540..2239505 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253665 NP_461089.1 CDS yegW NC_003197.1 2239479 2240225 R GntR family regulatory protein complement(2239479..2240225) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253666 NP_461090.1 CDS thiD NC_003197.1 2240261 2241061 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase complement(2240261..2241061) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253667 NP_461091.1 CDS thiM NC_003197.1 2241048 2241845 R catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase complement(2241048..2241845) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253668 NP_461092.1 CDS STM2148 NC_003197.1 2242255 2242569 D periplasmic protein 2242255..2242569 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253669 NP_461093.1 CDS stcD NC_003197.1 2242832 2243839 R outer membrane lipoprotein complement(2242832..2243839) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253670 NP_461094.1 CDS stcC NC_003197.1 2243855 2246344 R outer membrane protein complement(2243855..2246344) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253671 NP_461095.1 CDS stcB NC_003197.1 2246358 2247041 R periplasmic chaperone protein complement(2246358..2247041) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253672 NP_461096.1 CDS stcA NC_003197.1 2247097 2247627 R fimbrial-like protein complement(2247097..2247627) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253673 NP_461097.1 CDS yehE NC_003197.1 2247906 2248187 R outer membrane protein complement(2247906..2248187) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253674 NP_461098.1 CDS mrp NC_003197.1 2248465 2249574 R ATP-binding protein complement(2248465..2249574) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253675 NP_461099.1 CDS metG NC_003197.1 2249739 2251772 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionine--tRNA ligase 2249739..2251772 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253676 NP_461100.1 CDS yehR NC_003197.1 2252013 2252471 D lipoprotein 2252013..2252471 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253677 NP_461101.1 CDS STM2156A NC_003197.1 2252643 2253173 D hypothetical 16.9 kDa lipoprotein precursor; hypothetical protein 2252643..2253173 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253678 NP_461102.1 CDS yehS NC_003197.1 2253230 2253697 R cytoplasmic protein complement(2253230..2253697) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253679 NP_461103.1 CDS yehT NC_003197.1 2253744 2254463 R unknown function; when overproduced it confers drug-resistance; two-component response-regulator YehT complement(2253744..2254463) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253680 NP_461104.1 CDS yehU NC_003197.1 2254460 2256145 R two component sensor kinase YehU complement(2254460..2256145) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253681 NP_461105.1 CDS yehV NC_003197.1 2256368 2257099 D HTH-type transcriptional regulator MlrA 2256368..2257099 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253682 NP_461106.1 CDS STM2161 NC_003197.1 2257159 2257266 D hypothetical protein 2257159..2257266 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253683 NP_461107.1 CDS yehW NC_003197.1 2257247 2257978 R proline/glycine betaine ABC transporter permease complement(2257247..2257978) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253684 NP_461108.1 CDS yehX NC_003197.1 2257962 2258909 R proline/glycine betaine ABC transporter ATP-binding protein complement(2257962..2258909) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253685 NP_461109.1 CDS yehY NC_003197.1 2258902 2260071 R proline/glycine betaine ABC transporter permease complement(2258902..2260071) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253686 NP_461110.1 CDS yehZ NC_003197.1 2260075 2260992 R proline/glycine betaine ABC transporter substrate-binding protein complement(2260075..2260992) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253687 NP_461111.1 CDS bglX NC_003197.1 2261173 2263470 R periplasmic beta-glucosidase (SW:BGLX_SALTY); periplasmic beta-glucosidase complement(2261173..2263470) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253688 NP_461112.1 CDS dld NC_003197.1 2263737 2265467 D component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 2263737..2265467 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253689 NP_461113.1 CDS pbpG NC_003197.1 2265525 2266472 R specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase complement(2265525..2266472) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253690 NP_461114.1 CDS yohC NC_003197.1 2266638 2267225 R transporter complement(2266638..2267225) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253691 NP_461115.1 CDS yohD NC_003197.1 2267357 2267953 D DedA family; DedA family membrane protein 2267357..2267953 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253692 NP_461116.1 CDS yohF NC_003197.1 2268002 2268763 R oxidoreductase complement(2268002..2268763) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253693 NP_461117.1 CDS yohG NC_003197.1 2268829 2270265 R may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; multidrug resistance outer membrane protein MdtQ complement(2268829..2270265) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253694 NP_461119.1 CDS yohI NC_003197.1 2270724 2271662 R tRNA-dihydrouridine synthase C complement(2270724..2271662) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253696 NP_461120.1 CDS STM2175 NC_003197.1 2271771 2272964 R catalyzes the formation of catechol from salicylate; monooxygenase complement(2271771..2272964) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253697 NP_461121.1 CDS STM2176 NC_003197.1 2272979 2273623 R glutathione S-transferase complement(2272979..2273623) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253698 NP_461122.1 CDS STM2177 NC_003197.1 2273632 2274333 R flutathione S-transferase complement(2273632..2274333) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253699 NP_461123.1 CDS STM2178 NC_003197.1 2274349 2275386 R 1,2-dioxygenase complement(2274349..2275386) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253700 NP_461124.1 CDS STM2179 NC_003197.1 2275398 2276756 R sugar transporter complement(2275398..2276756) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253701 NP_461125.1 CDS STM2180 NC_003197.1 2276882 2277790 D LysR family transcriptional regulator 2276882..2277790 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253702 NP_461126.1 CDS STM2181 NC_003197.1 2277922 2278320 D hypothetical protein 2277922..2278320 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253703 NP_461127.1 CDS yohK NC_003197.1 2278317 2279012 D transmembrane protein 2278317..2279012 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253704 NP_461128.1 CDS cdd NC_003197.1 2279166 2280050 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2279166..2280050 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253705 NP_461129.1 CDS sanA NC_003197.1 2280227 2280946 D vancomycin sensitivity protein 2280227..2280946 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253706 NP_461130.1 CDS b2145 NC_003197.1 2280943 2281188 D inner membrane protein 2280943..2281188 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253707 NP_461131.1 CDS STM2186 NC_003197.1 2281393 2282634 D NAD-dependent dihydropyrimidine dehydrogenase subunit PreT 2281393..2282634 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253708 NP_461132.1 CDS yeiA NC_003197.1 2282628 2283863 D catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; NAD-dependent dihydropyrimidine dehydrogenase subunit PreA 2282628..2283863 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253709 NP_461133.1 CDS mglC NC_003197.1 2283938 2284948 R ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; galactose/methylgalactoside ABC transporter permease MglC complement(2283938..2284948) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253710 NP_461134.1 CDS mglA NC_003197.1 2284964 2286484 R with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methylgalactoside ABC transporter ATP-binding protein MglA complement(2284964..2286484) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253711 NP_461135.1 CDS mglB NC_003197.1 2286618 2287616 R D-galactose-binding periplasmic protein precursor; GDP; D-galactose/D-glucose binding protein; GGBP (SW:DGAL_SALTY); ABC superfamily periplasmic protein; galactose/methylgalactoside ABC transporter substrate-binding protein MglB complement(2286618..2287616) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253712 NP_461136.1 CDS galS NC_003197.1 2288115 2289137 R negative regulator of the mglBAC operon for galactose utilization; HTH-type transcriptional regulator GalS complement(2288115..2289137) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253713 NP_461137.1 CDS STM2192 NC_003197.1 2289287 2290429 R hypothetical protein complement(2289287..2290429) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253714 NP_461138.1 CDS folE NC_003197.1 2290444 2291112 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(2290444..2291112) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253715 NP_461139.1 CDS yeiG NC_003197.1 2291442 2292179 D esterase 2291442..2292179 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253716 NP_461140.1 CDS STM2195 NC_003197.1 2292287 2292676 R transcriptional regulator complement(2292287..2292676) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253717 NP_461141.1 CDS STM2196 NC_003197.1 2292681 2294048 R D-serine dehydratase complement(2292681..2294048) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253718 NP_461142.1 CDS STM2197 NC_003197.1 2294265 2295152 D phosphoserine phosphatase 2294265..2295152 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253719 NP_461143.1 CDS STM2198 NC_003197.1 2295185 2296507 D regulatory protein 2295185..2296507 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253720 NP_461144.1 CDS cirA NC_003197.1 2296551 2298542 R Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein; catecholate siderophore receptor CirA complement(2296551..2298542) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253721 NP_461145.1 CDS lysP NC_003197.1 2298888 2300357 R APC family lysine-specific permease complement(2298888..2300357) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253722 NP_461146.1 CDS yeiE NC_003197.1 2300547 2301410 R LysR family transcriptional regulator complement(2300547..2301410) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253723 NP_461147.1 CDS yeiH NC_003197.1 2301531 2302580 D inner membrane protein 2301531..2302580 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253724 NP_461148.1 CDS nfo NC_003197.1 2302659 2303516 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2302659..2303516 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253725 NP_461149.1 CDS fruA NC_003197.1 2303581 2305269 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system fructose-specific transporter subunit IIBC complement(2303581..2305269) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253726 NP_461150.1 CDS fruK NC_003197.1 2305286 2306224 R converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; 1-phosphofructokinase complement(2305286..2306224) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253727 NP_461151.1 CDS fruF NC_003197.1 2306224 2307354 R phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein complement(2306224..2307354) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253728 NP_461152.1 CDS setB NC_003197.1 2307723 2308904 D sugar efflux transporter B 2307723..2308904 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253729 NP_461153.1 CDS STM2208 NC_003197.1 2308969 2309634 R inner membrane protein complement(2308969..2309634) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253730 NP_461154.1 CDS STM2209 NC_003197.1 2309636 2309758 R inner membrane protein complement(2309636..2309758) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253731 NP_945165.1 CDS STM2209.1c NC_003197.1 2310146 2310400 R hypothetical protein complement(2310146..2310400) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673743 NP_461155.2 CDS yeiP NC_003197.1 2310724 2311296 D Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P 2310724..2311296 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253733 NP_461156.1 CDS yeiR NC_003197.1 2311509 2312495 D cobalamin biosynthesis protein 2311509..2312495 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253734 NP_461157.1 CDS yeiU NC_003197.1 2312525 2313244 D permease 2312525..2313244 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253735 NP_461158.1 CDS spr NC_003197.1 2313658 2314230 D by similarity, Spr seems to have peptidase activity; involved in thermoresistance; outer membrane lipoprotein 2313658..2314230 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253736 NP_461159.1 CDS rtn NC_003197.1 2314556 2316112 D involved in resistance to lambda and N4 phages; lambda/N4 phages resistance membrane protein 2314556..2316112 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253737 NP_461160.1 CDS yejA NC_003197.1 2316219 2318024 D dipeptide/oligopeptide/nickel ABC transporter substrate-binding protein 2316219..2318024 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253738 NP_461161.1 CDS yejB NC_003197.1 2318034 2319128 D dipeptide/oligopeptide/nickel ABC transporter permease 2318034..2319128 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253739 NP_461162.1 CDS yejE NC_003197.1 2319128 2320153 D dipeptide/oligopeptide/nickel ABC transporter permease 2319128..2320153 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253740 NP_461163.1 CDS yejF NC_003197.1 2320155 2321744 D dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein 2320155..2321744 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253741 NP_461164.1 CDS yejG NC_003197.1 2321748 2322092 R cytoplasmic protein complement(2321748..2322092) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253742 NP_461165.1 CDS bcr NC_003197.1 2322483 2323673 R Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system protein complement(2322483..2323673) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253743 NP_461166.1 CDS rsuA NC_003197.1 2323701 2324396 R catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; rRNA small subunit pseudouridine synthase A complement(2323701..2324396) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253744 NP_461167.1 CDS yejH NC_003197.1 2324548 2326308 D ATP-dependent helicase 2324548..2326308 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253745 NP_461168.1 CDS rplY NC_003197.1 2326433 2326717 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2326433..2326717 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253746 NP_461169.1 CDS STM2225 NC_003197.1 2326826 2327446 R inner membrane protein complement(2326826..2327446) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253747 NP_461170.1 CDS yejK NC_003197.1 2327474 2328481 R present in spermidine nucleoids; nucleoid-associated protein complement(2327474..2328481) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253748 NP_461171.1 CDS STM2227 NC_003197.1 2328661 2328888 D hypothetical protein 2328661..2328888 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253749 NP_461172.1 CDS yejM NC_003197.1 2328920 2330680 D hypothetical protein in rplY-proL intergenic region (SW:YEJM_SALTY); alkaline phosphatase superfamily; inner membrane protein 2328920..2330680 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253750 NP_461173.2 CDS STM2230.1c NC_003197.1 2330961 2331431 R DNA polymerase V subunit complement(2330961..2331431) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253752 NP_461174.1 CDS STM2231 NC_003197.1 2331492 2331782 D SsrB-regulated factor 2331492..2331782 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253753 NP_461175.1 CDS oafA NC_003197.1 2332130 2333959 D O-antigen five; acetylation of the O-antigen (LPS); O-antigen acetylase 2332130..2333959 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253754 NP_461176.1 CDS STM2233 NC_003197.1 2334013 2334456 R cytoplasmic protein complement(2334013..2334456) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253755 NP_461177.1 CDS STM2234 NC_003197.1 2334834 2335361 R phage tail fiber assembly protein complement(2334834..2335361) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253756 NP_461178.1 CDS STM2235 NC_003197.1 2335364 2336605 R phage protein complement(2335364..2336605) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253757 NP_461179.1 CDS STM2236 NC_003197.1 2336666 2337184 R phage protein complement(2336666..2337184) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253758 NP_461180.1 CDS STM2237 NC_003197.1 2337198 2337527 R inner membrane protein complement(2337198..2337527) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253759 NP_461181.1 CDS STM2238 NC_003197.1 2337824 2339155 D phage protein 2337824..2339155 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253760 NP_461182.1 CDS STM2239 NC_003197.1 2339184 2339552 R phage antiterminator complement(2339184..2339552) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253761 NP_461183.1 CDS STM2240 NC_003197.1 2339567 2340556 R cytoplasmic protein complement(2339567..2340556) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253762 NP_461184.1 CDS sspH2 NC_003197.1 2340885 2343251 R induced by the SPI-2 regulator ssrA/B; secreted by SPI-2; E3 ubiquitin-protein ligase SspH2 complement(2340885..2343251) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253763 NP_461185.1 CDS STM2242 NC_003197.1 2343420 2343623 R phage tail fiber protein complement(2343420..2343623) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253764 NP_461186.1 CDS STM2243 NC_003197.1 2343920 2344711 R phage tail fiber protein complement(2343920..2344711) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253765 NP_461187.1 CDS STM2244 NC_003197.1 2345014 2345217 D virulence protein MsgA-like protein 2345014..2345217 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253766 NP_461188.1 CDS STM2245 NC_003197.1 2345409 2345972 R outer membrane protein complement(2345409..2345972) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253767 NP_461189.1 CDS narP NC_003197.1 2346702 2347349 D nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; response regulator NarP 2346702..2347349 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253768 NP_461190.1 CDS ccmH NC_003197.1 2347393 2348436 R heme lyase subunit complement(2347393..2348436) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253769 NP_461191.1 CDS ccmG NC_003197.1 2348433 2348990 R thiol:disulfide interchange protein DsbE; cytochrome c biogenesis protein CcmG complement(2348433..2348990) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253770 NP_461192.1 CDS ccmF NC_003197.1 2348987 2350918 R cytochrome c-type biogenesis protein CcmF complement(2348987..2350918) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253771 NP_461193.1 CDS ccmE NC_003197.1 2350915 2351394 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(2350915..2351394) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253772 NP_461194.1 CDS ccmD NC_003197.1 2351391 2351603 R heme exporter protein CcmD complement(2351391..2351603) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253773 NP_461195.1 CDS ccmC NC_003197.1 2351600 2352337 R heme exporter protein CcmC complement(2351600..2352337) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253774 NP_461196.1 CDS ccmB NC_003197.1 2352389 2353048 R heme exporter protein CcmB complement(2352389..2353048) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253775 NP_461197.1 CDS ccmA NC_003197.1 2353045 2353662 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis ATP-binding export protein CcmA complement(2353045..2353662) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253776 NP_461198.1 CDS napC NC_003197.1 2353683 2354285 R with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; cytochrome c-type protein NapC complement(2353683..2354285) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253777 NP_461199.1 CDS napB NC_003197.1 2354295 2354744 R small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; periplasmic nitrate reductase electron transfer subunit complement(2354295..2354744) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253778 NP_461200.1 CDS napH NC_003197.1 2354860 2355729 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; ferredoxin-type protein NapH complement(2354860..2355729) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253779 NP_461201.1 CDS napG NC_003197.1 2355716 2356411 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; ferredoxin-type protein NapG complement(2355716..2356411) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253780 NP_461202.1 CDS napA NC_003197.1 2356418 2358904 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; periplasmic nitrate reductase large subunit complement(2356418..2358904) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253781 NP_461203.1 CDS napD NC_003197.1 2358901 2359164 R periplasmic nitrate reductase assembly protein complement(2358901..2359164) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253782 NP_461204.1 CDS napF NC_003197.1 2359154 2359645 R Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA.; ferredoxin-type protein complement(2359154..2359645) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253783 NP_461205.1 CDS eco NC_003197.1 2360059 2360553 D serine protease inhibitor, inhibits trypsin and other proteases; ecotin 2360059..2360553 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253784 NP_461206.1 CDS yojI NC_003197.1 2360762 2362405 R efflux pump for the antibacterial peptide microcin J25; multidrug transporter permease/ATP-binding protein complement(2360762..2362405) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253785 NP_461207.1 CDS alkB NC_003197.1 2362481 2363131 R alkylated DNA repair protein ALKB; specific for alkylated DNA; alpha-ketoglutarate-dependent dioxygenase AlkB complement(2362481..2363131) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253786 NP_461208.1 CDS ada NC_003197.1 2363134 2364195 R ADA regulatory protein; regulatory protein of adaptative response; (SW:ADA_SALTY); AraC/Xyl family; bifunctional O6-methylguanine-DNA methyltransferase/transcriptional dual regulator complement(2363134..2364195) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253787 NP_461209.1 CDS apbE NC_003197.1 2364276 2365328 R catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; thiamine biosynthesis lipoprotein ApbE complement(2364276..2365328) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253788 NP_461210.1 CDS ompC NC_003197.1 2365443 2366579 R allows for ions and hydrophilic solutes to cross the outer membrane; outer membrane porin protein C complement(2365443..2366579) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253789 NP_461211.1 CDS rscD NC_003197.1 2367308 2369977 D in two-component regulatory system with RcsBC; sensor-like histidine kinase RcsD 2367308..2369977 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253791 NP_461212.1 CDS rcsB NC_003197.1 2369994 2370644 D two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB 2369994..2370644 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253792 NP_461213.1 CDS rcsC NC_003197.1 2370747 2373593 R in two-component regulatory system with RcsB and RscD; sensor histidine kinase RscC complement(2370747..2373593) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253793 NP_461214.1 CDS gyrA NC_003197.1 2373711 2376347 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(2373711..2376347) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253794 NP_461215.1 CDS STM2273 NC_003197.1 2376757 2377959 R dehydratase complement(2376757..2377959) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253795 NP_461216.1 CDS STM2274 NC_003197.1 2377974 2379299 R permease complement(2377974..2379299) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253796 NP_461217.2 CDS STM2275 NC_003197.1 2379538 2380233 D GntR family; GntR family regulatory protein 2379538..2380233 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253797 NP_461218.1 CDS ubiG NC_003197.1 2380316 2381044 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2380316..2381044 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253798 NP_461219.1 CDS nrdA NC_003197.1 2381400 2383685 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2381400..2383685 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253799 NP_461220.1 CDS nrdB NC_003197.1 2383798 2384928 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2383798..2384928 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253800 NP_461221.1 CDS yfaE NC_003197.1 2384928 2385182 D plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases; 2Fe-2S ferredoxin 2384928..2385182 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253801 NP_461222.1 CDS STM2280 NC_003197.1 2385184 2386374 R permease complement(2385184..2386374) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253802 NP_461223.1 CDS STM2281 NC_003197.1 2386536 2387414 D LysR family; LysR family transcriptional regulator 2386536..2387414 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253803 NP_461224.1 CDS glpQ NC_003197.1 2387530 2388600 R hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase complement(2387530..2388600) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253804 NP_461225.1 CDS glpT NC_003197.1 2388605 2389963 R catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter complement(2388605..2389963) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253805 NP_461226.1 CDS glpA NC_003197.1 2390236 2391864 D anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase large subunit 2390236..2391864 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253806 NP_461227.1 CDS glpB NC_003197.1 2391854 2393113 D sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase membrane anchor subunit 2391854..2393113 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253807 NP_461228.1 CDS glpC NC_003197.1 2393110 2394300 D anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase small subunit 2393110..2394300 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253808 NP_461229.2 CDS sseL NC_003197.1 2394726 2395748 D specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity island 2 type III secretion system; deubiquitinase SseL 2394726..2395748 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253809 NP_461230.1 CDS STM2288 NC_003197.1 2395858 2396034 R cytoplasmic protein complement(2395858..2396034) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253810 NP_461231.1 CDS STM2289 NC_003197.1 2396040 2396843 R 2-keto-3-deoxy-L-rhamnonate aldolase complement(2396040..2396843) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253811 NP_461232.1 CDS yfaV NC_003197.1 2396869 2398158 R MFS family transport protein complement(2396869..2398158) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253812 NP_461233.1 CDS yfaW NC_003197.1 2398214 2399431 R L-rhamnonate dehydratase complement(2398214..2399431) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253813 NP_461234.1 CDS yfaX NC_003197.1 2399433 2400215 R transcriptional regulator complement(2399433..2400215) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253814 NP_461235.1 CDS STM2293 NC_003197.1 2400465 2401661 R competence damage-inducible protein A complement(2400465..2401661) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253815 NP_461236.1 CDS yfaZ NC_003197.1 2401776 2402423 R inner membrane protein complement(2401776..2402423) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253816 NP_461237.1 CDS nudI NC_003197.1 2402597 2403022 D nucleoside triphosphatase NudI 2402597..2403022 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253817 NP_461238.1 CDS ais NC_003197.1 2403067 2403672 R ipopolysaccharide core heptose(II)-phosphate phosphatase complement(2403067..2403672) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253818 NP_461239.2 CDS yfbE NC_003197.1 2403971 2405110 D catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 2403971..2405110 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253819 NP_461240.1 CDS pmrF NC_003197.1 2405113 2406096 D catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 2405113..2406096 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253820 NP_461241.1 CDS yfbG NC_003197.1 2406093 2408075 D Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 2406093..2408075 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253821 NP_461242.1 CDS STM2300 NC_003197.1 2408072 2408971 D 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase 2408072..2408971 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253822 NP_461243.1 CDS arnT NC_003197.1 2408968 2410614 D catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase 2408968..2410614 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253823 NP_461244.1 CDS STM2302 NC_003197.1 2410611 2410946 D 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE 2410611..2410946 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253824 NP_461245.1 CDS STM2303 NC_003197.1 2410946 2411323 D 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF 2410946..2411323 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253825 NP_461246.1 CDS pmrD NC_003197.1 2411318 2411575 R polymyxin b resistance protein PmrD (SW:PMRD_SALTY); signal transduction protein PmrD complement(2411318..2411575) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253826 NP_461247.1 CDS menE NC_003197.1 2411673 2413040 R O-succinylbenzoic acid-CoA ligase (SW:MENE_SALTY); O-succinylbenzoic acid--CoA ligase complement(2411673..2413040) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253827 NP_461248.1 CDS menC NC_003197.1 2413037 2413999 R catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase complement(2413037..2413999) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253828 NP_461249.1 CDS menB NC_003197.1 2413999 2414856 R catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; 1,4-dihydroxy-2-naphthoyl-CoA synthase complement(2413999..2414856) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253829 NP_461250.1 CDS yfbB NC_003197.1 2414871 2415629 R catalyzes the formation of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate; and can also catalyze the hydrolysis of the thioester bond in palmitoyl-CoA; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase complement(2414871..2415629) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253830 NP_461251.1 CDS menD NC_003197.1 2415626 2417296 R SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(2415626..2417296) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253831 NP_461252.1 CDS menF NC_003197.1 2417382 2418677 R synthesizes isochorismate acid from chorismate; isochorismate synthase complement(2417382..2418677) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253832 NP_461253.2 CDS elaB NC_003197.1 2418778 2419083 R inner membrane protein complement(2418778..2419083) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253833 NP_461254.1 CDS elaA NC_003197.1 2419138 2419599 R acyltransferase complement(2419138..2419599) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253834 NP_461255.1 CDS elaC NC_003197.1 2419660 2420577 D member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease BN 2419660..2420577 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253835 NP_461256.1 CDS STM2314 NC_003197.1 2420643 2421644 D chemotaxis signal transduction protein 2420643..2421644 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253836 NP_461257.1 CDS STM2315 NC_003197.1 2421685 2423466 R von Willebrand factor; contains vWF type A domain; hypothetical protein complement(2421685..2423466) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253837 NP_461258.2 CDS nuoN NC_003197.1 2424354 2425811 R Catalyzes the transfer of electrons from NADH to quinone; NADH-quinone oxidoreductase subunit N complement(2424354..2425811) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253838 NP_461259.1 CDS nuoM NC_003197.1 2425818 2427347 R Catalyzes the transfer of electrons from NADH to quinone; NADH-quinone oxidoreductase subunit M complement(2425818..2427347) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253839 NP_461260.1 CDS nuoL NC_003197.1 2427661 2429502 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH-quinone oxidoreductase subunit L complement(2427661..2429502) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253840 NP_461261.1 CDS nuoK NC_003197.1 2429499 2429801 R Catalyzes the transfer of electrons from NADH to quinone; NADH-quinone oxidoreductase subunit K complement(2429499..2429801) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253841 NP_461262.1 CDS nuoJ NC_003197.1 2429798 2430352 R Catalyzes the transfer of electrons from NADH to quinone; NADH-quinone oxidoreductase subunit J complement(2429798..2430352) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253842 NP_461263.1 CDS nuoI NC_003197.1 2430363 2430905 R Catalyzes the transfer of electrons from NADH to quinone; NADH-quinone oxidoreductase subunit I complement(2430363..2430905) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253843 NP_461264.1 CDS nuoH NC_003197.1 2430920 2431897 R Catalyzes the transfer of electrons from NADH to quinone; NADH-quinone oxidoreductase subunit H complement(2430920..2431897) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253844 NP_461265.2 CDS nuoG NC_003197.1 2431894 2434620 R Catalyzes the transfer of electrons from NADH to quinone; NADH-quinone oxidoreductase subunit G complement(2431894..2434620) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253845 NP_461266.1 CDS nuoF NC_003197.1 2434651 2435988 R shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH-quinone oxidoreductase subunit F complement(2434651..2435988) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253846 NP_461267.1 CDS nuoE NC_003197.1 2435985 2436485 R Catalyzes the transfer of electrons from NADH to quinone; NADH-quinone oxidoreductase subunit E complement(2435985..2436485) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253847 NP_461268.1 CDS nuoC NC_003197.1 2436488 2438290 R NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH-ubiquinone oxidoreductase subunit C/D complement(2436488..2438290) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253848 NP_461269.1 CDS nuoB NC_003197.1 2438377 2439039 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH-quinone oxidoreductase subunit B complement(2438377..2439039) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253849 NP_461270.1 CDS nuoA NC_003197.1 2439055 2439498 R Catalyzes the transfer of electrons from NADH to quinone; NADH-quinone oxidoreductase subunit A complement(2439055..2439498) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253850 NP_461271.1 CDS STM2329 NC_003197.1 2439893 2440045 R cytoplasmic protein complement(2439893..2440045) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253851 NP_461272.1 CDS lrhA NC_003197.1 2440125 2441063 R LysR family NADH dehydrogenase transcriptional repressor complement(2440125..2441063) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253852 NP_461273.1 CDS yfbQ NC_003197.1 2441995 2443209 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2441995..2443209 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253853 NP_461274.1 CDS STM2332 NC_003197.1 2443303 2443902 D 5'-deoxynucleotidase 2443303..2443902 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253854 NP_461275.1 CDS yfbS NC_003197.1 2443994 2445820 R response regulator complement(2443994..2445820) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253855 NP_461276.2 CDS yfbT NC_003197.1 2445897 2446556 R phosphatase complement(2445897..2446556) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253856 NP_461277.1 CDS STM2335 NC_003197.1 2446567 2447061 R hypothetical protein complement(2446567..2447061) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253857 NP_461278.1 CDS STM2336 NC_003197.1 2447144 2447599 R hypothetical protein complement(2447144..2447599) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253858 NP_461279.1 CDS ackA NC_003197.1 2447939 2449141 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2447939..2449141 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253859 NP_461280.1 CDS pta NC_003197.1 2449218 2451362 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2449218..2451362 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253860 NP_461281.1 CDS yfcC NC_003197.1 2451580 2453100 D integral membrane protein 2451580..2453100 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253861 NP_461282.1 CDS STM2340 NC_003197.1 2453149 2454102 R transketolase complement(2453149..2454102) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253862 NP_461283.1 CDS STM2341 NC_003197.1 2454095 2454925 R transketolase complement(2454095..2454925) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253863 NP_461284.2 CDS ulaA NC_003197.1 2454922 2456319 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC complement(2454922..2456319) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253864 NP_461285.1 CDS STM2343 NC_003197.1 2456334 2456606 R PTS system ascorbate-specific transporter subunit IIB complement(2456334..2456606) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253865 NP_461286.1 CDS STM2344 NC_003197.1 2456687 2457130 R PTS system transporter subunit IIA complement(2456687..2457130) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253866 YP_006892399.1 CDS STM05425 NC_003197.1 2457129 2457302 D hypothetical protein 2457129..2457302 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865723 NP_461287.1 CDS STM2345 NC_003197.1 2457383 2458402 D transcriptional regulator 2457383..2458402 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253867 NP_461288.1 CDS STM2346 NC_003197.1 2458408 2458962 R Nudix hydrolase complement(2458408..2458962) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253868 NP_461289.1 CDS yfcE NC_003197.1 2459019 2459570 R phosphodiesterase complement(2459019..2459570) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253869 NP_461290.1 CDS yfcF NC_003197.1 2459626 2460270 R glutathione S-transferase complement(2459626..2460270) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253870 NP_461291.1 CDS yfcG NC_003197.1 2460413 2461060 D glutathione S-transferase 2460413..2461060 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253871 NP_461292.1 CDS yfcH NC_003197.1 2461186 2462079 D sugar nucleotide epimerase 2461186..2462079 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253872 NP_461293.1 CDS hisP NC_003197.1 2462131 2462907 R histidine transport ATP-binding protein HisP (SW:HISP_SALTY); ABC superfamily ATP-binding protein; histidine ABC transporter ATP-binding protein HisP complement(2462131..2462907) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253873 NP_461294.1 CDS hisM NC_003197.1 2462918 2463625 R histidine transport system permease protein HisM (SW:HISM_SALTY); ABC superfamily membrane protein; histidine ABC transporter permease HisM complement(2462918..2463625) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253874 NP_461295.1 CDS hisQ NC_003197.1 2463622 2464308 R histidine transport system permease protein HisQ (SW:HISQ_SALTY); ABC superfamily membrane protein; histidine ABC transporter permease HisQ complement(2463622..2464308) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253875 NP_461296.1 CDS hisJ NC_003197.1 2464491 2465273 R histidine-binding periplasmic protein precursor; HBP (SW:HISJ_SALTY); ABC superfamily binding protein; histidine ABC transporter substrate-binding protein HisJ complement(2464491..2465273) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253876 NP_461297.1 CDS argT NC_003197.1 2465511 2466293 R lysine-arginine-ornithine-binding periplasmic protein precursor; LAO-binding protein (SW:ARGT_SALTY); ABC superfamily binding protein; lysine/arginine/ornithine ABC transporter substrate-binding protein complement(2465511..2466293) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253877 NP_461298.1 CDS ubiX NC_003197.1 2466582 2467151 R with UbiD acts to catalyze the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase partner protein complement(2466582..2467151) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253878 NP_461299.1 CDS STM2357 NC_003197.1 2467178 2468584 R amino acid transporter complement(2467178..2468584) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253879 NP_461300.1 CDS STM2358 NC_003197.1 2468648 2469751 R cytoplasmic protein complement(2468648..2469751) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253880 NP_461301.1 CDS STM2359 NC_003197.1 2469753 2471174 R amino acid transporter complement(2469753..2471174) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253881 NP_461302.1 CDS STM2360 NC_003197.1 2471265 2472662 R diaminopimelate decarboxylase complement(2471265..2472662) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253882 NP_461303.1 CDS STM2361 NC_003197.1 2472873 2474300 D regulatory protein 2472873..2474300 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253883 NP_461304.1 CDS purF NC_003197.1 2474336 2475853 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(2474336..2475853) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253884 NP_461305.1 CDS cvpA NC_003197.1 2475891 2476379 R membrane protein required for colicin V production; colicin V production protein complement(2475891..2476379) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253885 NP_461306.1 CDS dedD NC_003197.1 2476690 2477364 R lipoprotein complement(2476690..2477364) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253886 NP_461307.1 CDS folC NC_003197.1 2477354 2478622 R bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(2477354..2478622) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253887 NP_461308.1 CDS accD NC_003197.1 2478690 2479604 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxyl transferase subunit beta complement(2478690..2479604) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253888 NP_461309.1 CDS STM2367 NC_003197.1 2479754 2480413 R DedA family; inner membrane protein complement(2479754..2480413) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253889 NP_461310.1 CDS truA NC_003197.1 2480462 2481274 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(2480462..2481274) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253890 NP_461311.1 CDS usg NC_003197.1 2481274 2482287 R semialdehyde dehydrogenase complement(2481274..2482287) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253891 NP_461312.1 CDS pdxB NC_003197.1 2482355 2483491 R catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase complement(2482355..2483491) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253892 NP_461313.1 CDS flk NC_003197.1 2483595 2484596 D in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; flagella biosynthesis regulator 2483595..2484596 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253893 NP_461314.1 CDS STM2372 NC_003197.1 2484593 2485771 R hypothetical protein complement(2484593..2485771) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253894 NP_461315.1 CDS STM2373 NC_003197.1 2485951 2486325 R cytoplasmic protein complement(2485951..2486325) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253895 NP_461316.1 CDS STM2374 NC_003197.1 2486498 2486746 D regulatory protein 2486498..2486746 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253896 NP_461317.1 CDS STM2375 NC_003197.1 2486915 2487283 D cytoplasmic protein 2486915..2487283 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253897 NP_461318.1 CDS STM2376 NC_003197.1 2487283 2487801 D periplasmic protein 2487283..2487801 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253898 NP_461319.1 CDS STM2377 NC_003197.1 2487868 2488524 R inner membrane protein complement(2487868..2488524) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253899 NP_461320.1 CDS fabB NC_003197.1 2488622 2489836 R FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(2488622..2489836) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253900 NP_461321.2 CDS mnmC NC_003197.1 2489996 2491996 D catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase 2489996..2491996 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253901 NP_461322.1 CDS yfcL NC_003197.1 2492048 2492323 R cytoplasmic protein complement(2492048..2492323) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253902 NP_461323.1 CDS yfcM NC_003197.1 2492356 2492904 R cytoplasmic protein complement(2492356..2492904) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253903 NP_461324.1 CDS yfcA NC_003197.1 2492904 2493713 R inner membrane protein complement(2492904..2493713) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253904 NP_461325.1 CDS mepA NC_003197.1 2493713 2494537 R penicillin-insensitive murein endopeptidase complement(2493713..2494537) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253905 NP_461326.1 CDS aroC NC_003197.1 2494541 2495626 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(2494541..2495626) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253906 NP_461327.1 CDS yfcB NC_003197.1 2495662 2496594 R involved in methylation of ribosomal protein L3; 50S ribosomal protein L3 glutamine methyltransferase complement(2495662..2496594) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253907 NP_461328.1 CDS STM2386 NC_003197.1 2496760 2497311 D contains Smr domain; hypothetical protein 2496760..2497311 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253908 NP_461329.1 CDS sixA NC_003197.1 2497411 2497896 R phosphohistidine phosphatase complement(2497411..2497896) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253909 NP_461330.1 CDS fadJ NC_003197.1 2498105 2500252 R multifunctional fatty acid oxidation complex subunit alpha complement(2498105..2500252) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253910 NP_461331.1 CDS fadI NC_003197.1 2500252 2501562 R FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase complement(2500252..2501562) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253911 NP_461332.1 CDS yfcZ NC_003197.1 2501740 2502024 R cytoplasmic protein complement(2501740..2502024) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253912 NP_461333.1 CDS fadL NC_003197.1 2502389 2503702 D long-chain fatty acid transporter 2502389..2503702 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253913 NP_461334.1 CDS vacJ NC_003197.1 2503763 2504518 R lipoprotein complement(2503763..2504518) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253914 NP_461335.1 CDS yfdC NC_003197.1 2504807 2505748 D inner membrane protein 2504807..2505748 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253915 NP_461336.1 CDS pgtE NC_003197.1 2506055 2506993 R outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA; outer membrane protease E complement(2506055..2506993) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253917 NP_461337.1 CDS pgtA NC_003197.1 2507261 2508508 R phosphoglycerate transport system transcriptional regulatory protein PgtA (SW:PGTA_SALTY); phosphoglycerate transport; phosphoglycerate transport system transcriptional regulator PgtA complement(2507261..2508508) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253918 NP_461338.1 CDS pgtB NC_003197.1 2508498 2510504 R protein for signal transmission; PgtB (SW:PGTB_SALTY); phosphoglycerate transport; phosphoglycerate transport system sensor protein PgtB complement(2508498..2510504) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253919 NP_461339.1 CDS pgtC NC_003197.1 2510501 2511694 R protein for signal transmission; PgtC (SW:PGTC_SALTY); phosphoglycerate transport; phosphoglycerate transport regulatory protein PgtC complement(2510501..2511694) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253920 NP_461340.1 CDS pgtP NC_003197.1 2512130 2513521 D phosphoglycerate transporter protein (SW:PGTP_SALTY); phosphoglycerate transport; phosphoglycerate transporter 2512130..2513521 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253921 NP_461341.1 CDS STM2400 NC_003197.1 2513797 2514039 R inner membrane protein complement(2513797..2514039) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253922 NP_461342.1 CDS ddg NC_003197.1 2514561 2515481 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock; palmitoleoyl-ACP-dependent acyltransferase 2514561..2515481 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253923 NP_461343.1 CDS yfdZ NC_003197.1 2516005 2517243 R aminotransferase complement(2516005..2517243) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253924 NP_461344.1 CDS glk NC_003197.1 2517964 2518929 R catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase complement(2517964..2518929) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253925 NP_461345.1 CDS STM2404 NC_003197.1 2519133 2520368 D ion transport protein 2519133..2520368 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253926 NP_461346.1 CDS STM2405 NC_003197.1 2520388 2522040 R indolepyruvate decarboxylase complement(2520388..2522040) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253927 NP_461347.1 CDS STM2406 NC_003197.1 2522220 2523218 D oxidoreductase 2522220..2523218 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253928 NP_461348.1 CDS ypeC NC_003197.1 2523332 2523658 D periplasmic protein 2523332..2523658 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253929 NP_461349.1 CDS mntH NC_003197.1 2523719 2524960 R manganese transport protein MntH (SW:MNTH_SALTY); Nramp family; divalent metal cation transporter MntH complement(2523719..2524960) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253930 NP_461350.1 CDS nupC NC_003197.1 2525303 2526505 D NUP family nucleoside transport protein 2525303..2526505 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253931 NP_461351.1 CDS yfeA NC_003197.1 2526558 2528747 R diguanylate cyclase/phosphodiesterase domain 1; diguanylate cyclase/phosphodiesterase domain 2; diguanylate cyclase/phosphodiesterase domain-containing protein complement(2526558..2528747) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253932 NP_461352.1 CDS yfeC NC_003197.1 2529353 2529715 D negative regulator 2529353..2529715 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253935 NP_461353.1 CDS yfeD NC_003197.1 2529717 2530109 D negative regulator 2529717..2530109 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253936 NP_461354.1 CDS gltX NC_003197.1 2530163 2531578 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamate--tRNA ligase complement(2530163..2531578) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253937 NP_461355.1 CDS xapR NC_003197.1 2532394 2533278 R DNA-binding transcriptional activator XapR complement(2532394..2533278) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253942 NP_945166.1 CDS STM2420.1n NC_003197.1 2533330 2533488 R hypothetical protein complement(2533330..2533488) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673749 NP_461356.1 CDS xapB NC_003197.1 2533547 2534803 R MFS superfamily xanthosine permease complement(2533547..2534803) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253943 YP_006892400.1 CDS STM05445 NC_003197.1 2534858 2535691 R purine nucleoside phosphorylase complement(2534858..2535691) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865713 NP_461358.1 CDS yfeN NC_003197.1 2535947 2536708 D outer membrane protein 2535947..2536708 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253945 NP_461359.1 CDS yfeR NC_003197.1 2536770 2537696 R LysR family transcriptional regulator complement(2536770..2537696) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253946 NP_461360.1 CDS yfeH NC_003197.1 2537786 2538784 D Na+-dependent transporter 2537786..2538784 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253947 NP_461361.2 CDS STM2426 NC_003197.1 2538781 2538999 R cytoplasmic protein complement(2538781..2538999) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253948 NP_461362.1 CDS ligA NC_003197.1 2539001 2541016 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; DNA ligase complement(2539001..2541016) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253949 NP_461363.1 CDS zipA NC_003197.1 2541088 2542074 R interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA complement(2541088..2542074) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253950 NP_461364.1 CDS cysZ NC_003197.1 2542306 2543067 D role in sulfur assimilation; sulfate transport protein CysZ 2542306..2543067 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253951 NP_461365.1 CDS cysK NC_003197.1 2543231 2544202 D CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 2543231..2544202 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253952 NP_461366.1 CDS ptsH NC_003197.1 2544586 2544843 D phosphocarrier protein HPR; histidine-containing protein (SW:PTHP_ECOLI); PTS family, Hpr protein; PTS system phosphohistidinoprotein-hexose phosphotransferase Hpr 2544586..2544843 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253953 NP_461367.1 CDS ptsI NC_003197.1 2544892 2546619 D Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase 2544892..2546619 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253954 NP_461368.1 CDS crr NC_003197.1 2546660 2547169 D functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter subunit IIA 2546660..2547169 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253955 NP_461369.1 CDS STM2434 NC_003197.1 2547318 2547557 R cytoplasmic protein complement(2547318..2547557) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253956 NP_461370.1 CDS pdxK NC_003197.1 2547554 2548420 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase complement(2547554..2548420) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253957 NP_461371.1 CDS ptsJ NC_003197.1 2548503 2549795 D transcriptional regulator PtsJ (SW:PTSJ_SALTY); GntR family; transcriptional regulator PtsJ 2548503..2549795 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253958 NP_461372.1 CDS yfeJ NC_003197.1 2549810 2550529 D Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 2549810..2550529 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253959 NP_461373.1 CDS STM2438 NC_003197.1 2550588 2550968 D hypothetical 13.3 kDa protein in pdxK-cysM intergenic region (SW:YFEK_SALTY); hypothetical protein 2550588..2550968 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253960 NP_461374.1 CDS STM2439 NC_003197.1 2550981 2551520 D hypothetical 20.5 kDa protein in pdxK-cysM intergenic region; hypothetical protein 2550981..2551520 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253961 NP_461375.1 CDS cysM NC_003197.1 2551651 2552562 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B complement(2551651..2552562) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253962 NP_461376.1 CDS cysA NC_003197.1 2552630 2553727 R sulfate transport atp-binding protein CYSA (SW:CYSA_SALTY); ABC superfamily ATP-binding protein; chromate resistance; sulfate/thiosulfate ABC transporter ATP-binding protein CysA complement(2552630..2553727) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253963 NP_461377.1 CDS cysW NC_003197.1 2553717 2554592 R Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; sulfate/thiosulfate ABC transporter permease CysW complement(2553717..2554592) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253964 NP_461378.1 CDS cysU NC_003197.1 2554592 2555425 R sulfate/thiosulfateABC transporter permease CysU complement(2554592..2555425) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253965 NP_461379.1 CDS cysP NC_003197.1 2555425 2556441 R thiosulfate-binding protein (SW:CYSP_SALTY); ABC superfamily binding protein; sulfate/thiosulfate ABC transporter substrate-binding protein CysT complement(2555425..2556441) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253966 NP_461380.1 CDS ucpA NC_003197.1 2556599 2557390 R oxidoreductase complement(2556599..2557390) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253967 NP_461381.1 CDS STM2446 NC_003197.1 2557628 2558527 R iron-dependent peroxidase complement(2557628..2558527) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253968 NP_461382.1 CDS STM2447 NC_003197.1 2558622 2559197 R outer membrane lipoprotein complement(2558622..2559197) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253969 NP_461383.1 CDS yfeZ NC_003197.1 2559259 2559708 R inner membrane protein complement(2559259..2559708) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253970 NP_461384.2 CDS STM2449.S NC_003197.1 2559695 2560120 R acetyltransferase complement(2559695..2560120) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253971 NP_461385.1 CDS amiA NC_003197.1 2560333 2561202 D probable N-acetylmuramoyl-L-alanine amidase AMIA (SW:AMIA_SALTY); N-acetylmuramoyl-l-alanine amidase I 2560333..2561202 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253972 NP_461386.1 CDS hemF NC_003197.1 2561205 2562104 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2561205..2562104 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253973 NP_461387.1 CDS STM2452 NC_003197.1 2562125 2562454 D hypothetical protein in eutR-hemF intergenic region; ORF33 (SW:YPFK_SALTY); hypothetical protein 2562125..2562454 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253974 NP_461388.1 CDS STM2453 NC_003197.1 2562583 2563860 D hypothetical 30.0 kDa protein in eutR-hemF intergenic region (ORF79) (SW:YPFL_SALTY); hypothetical protein 2562583..2563860 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253975 NP_461389.1 CDS eutR NC_003197.1 2564060 2565112 R activates the transcription of the ethanolamine utilization operon; HTH-type transcriptional regulator EutR complement(2564060..2565112) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253976 NP_461390.1 CDS eutK NC_003197.1 2565160 2565654 R ethanolamine utilization protein EutK (SW:EUTK_SALTY); carboxysome structural protein EutK complement(2565160..2565654) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253977 NP_461391.1 CDS eutL NC_003197.1 2565667 2566326 R ethanolamine utilization protein EutL (SW:EUTL_SALTY); carboxysome structural protein EutL complement(2565667..2566326) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253978 NP_461392.1 CDS eutC NC_003197.1 2566336 2567232 R catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit EutC complement(2566336..2567232) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253979 NP_461393.1 CDS eutB NC_003197.1 2567251 2568612 R ethanolamine ammonia-lyase heavy chain (SW:EUTB_SALTY); ethanolamine ammonia-lyase large subunit EutB complement(2567251..2568612) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253980 NP_461394.1 CDS eutA NC_003197.1 2568624 2570027 R reactivating factor for ethanolamine ammonia lyase; ethanolamine utilization protein EutA complement(2568624..2570027) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253981 NP_461395.1 CDS eutH NC_003197.1 2570024 2571250 R ethanolamine utilization protein EutH (SW:EUTH_SALTY); ethanolamine transporter EutH complement(2570024..2571250) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253982 NP_461396.1 CDS eutG NC_003197.1 2571370 2572557 R ethanolamine utilization protein EutG (SW:EUTG_SALTY); ethanol dehydrogenase EutG complement(2571370..2572557) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253983 NP_461397.1 CDS eutJ NC_003197.1 2572547 2573386 R ethanolamine utilization protein EutJ complement(2572547..2573386) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253984 NP_461398.1 CDS eutE NC_003197.1 2573397 2574800 R invovled in ethanolamine utilization protein EutE (SW:EUTE_SALTY); aldehyde oxidoreductase EutE complement(2573397..2574800) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253985 NP_461399.2 CDS eutN NC_003197.1 2574812 2575099 R involved in ethanolamine utilization protein EutN (SW:EUTN_SALTY); microcompartment shell protein EutN complement(2574812..2575099) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253986 NP_461400.1 CDS eutM NC_003197.1 2575212 2575502 R involved in ethanolamine utilization protein EutM (SW:EUTM_SALTY); carboxysome structural protein EutM complement(2575212..2575502) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253987 NP_461401.1 CDS eutD NC_003197.1 2575543 2576559 R in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase EutD complement(2575543..2576559) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253988 NP_461402.1 CDS eutT NC_003197.1 2576556 2577359 R ethanolamine utilization cobalamin adenosyltransferase (SW:EUTT_SALTY); cobalamin adenosyltransferase EutT complement(2576556..2577359) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253989 NP_461403.1 CDS eutQ NC_003197.1 2577356 2578045 R ethanolamine utilization protein EutQ (SW:EUTQ_SALTY); ethanolamine utilization protein EutQ complement(2577356..2578045) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253990 NP_461404.1 CDS eutP NC_003197.1 2578023 2578502 R ethanolamine utilization protein EutP (SW:EUTP_SALTY); ethanolamine utilization protein EutP complement(2578023..2578502) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253991 NP_461405.1 CDS eutS NC_003197.1 2578515 2578850 R ethanolamine utilization protein EutS (SW:EUTS_SALTY); carboxysome structural protein EutS complement(2578515..2578850) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253992 NP_461406.1 CDS tnpA_3 NC_003197.1 2579331 2579789 R transposase for insertion sequence element IS200 (SW:T200_SALTY); insertion sequence element IS200 transposase complement(2579331..2579789) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253993 NP_461407.1 CDS maeB NC_003197.1 2579979 2582258 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(2579979..2582258) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253994 NP_461408.1 CDS talA NC_003197.1 2582530 2583480 D Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase A 2582530..2583480 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253995 NP_461409.1 CDS tktB NC_003197.1 2583500 2585500 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 2583500..2585500 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253996 NP_461410.1 CDS STM2475 NC_003197.1 2585563 2585793 R cytoplasmic protein complement(2585563..2585793) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253997 NP_461411.1 CDS ypfG NC_003197.1 2585921 2586964 R periplasmic protein complement(2585921..2586964) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253998 NP_461412.1 CDS nudK NC_003197.1 2587089 2587664 R GDP-mannose pyrophosphatase NudK complement(2587089..2587664) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253999 NP_461413.1 CDS STM2478 NC_003197.1 2587868 2589166 D hypothetical protein 2587868..2589166 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254000 NP_461414.1 CDS aegA NC_003197.1 2589615 2591576 R unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic); oxidoreductase Fe-S binding subunit complement(2589615..2591576) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254001 NP_461415.1 CDS narQ NC_003197.1 2591762 2593462 D sensory histidine kinase NarQ 2591762..2593462 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254002 NP_461416.1 CDS acrD NC_003197.1 2593647 2596760 D RND family aminoglycoside/multidrug efflux pump 2593647..2596760 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254003 NP_461417.1 CDS yffB NC_003197.1 2597334 2597690 D glutaredoxin family protein 2597334..2597690 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254004 NP_461418.1 CDS dapE NC_003197.1 2597694 2598821 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2597694..2598821 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254005 NP_461419.1 CDS STM2484 NC_003197.1 2598849 2599049 D hypothetical protein 2598849..2599049 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254006 NP_461420.1 CDS ypfI NC_003197.1 2599076 2601094 R tRNA(Met) cytidine acetyltransferase TmcA complement(2599076..2601094) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254007 NP_461421.1 CDS STM2486 NC_003197.1 2601110 2601973 R inner membrane protein complement(2601110..2601973) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254008 NP_461422.1 CDS purC NC_003197.1 2602104 2602817 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(2602104..2602817) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254009 NP_461423.1 CDS nlpB NC_003197.1 2602992 2604026 R outer membrane protein assembly factor BamC complement(2602992..2604026) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254010 NP_461424.1 CDS dapA NC_003197.1 2604043 2604921 R catalyzes the formation of 4-hydroxy-tetrahydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; 4-hydroxy-tetrahydrodipicolinate synthase complement(2604043..2604921) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254011 NP_461425.2 CDS gcvR NC_003197.1 2605067 2605639 D negative transcriptional regulator of the gcvTHP operon; glycine cleavage system transcriptional repressor 2605067..2605639 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254012 NP_461426.1 CDS bcp NC_003197.1 2605639 2606109 D bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2605639..2606109 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254013 NP_461427.1 CDS STM2492 NC_003197.1 2606156 2606509 R glycerate kinase complement(2606156..2606509) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254014 NP_461428.1 CDS perM NC_003197.1 2606696 2607763 R PerM family permease complement(2606696..2607763) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254015 NP_461429.1 CDS STM2494 NC_003197.1 2607971 2609434 D inner membrane or exported protein; hypothetical protein 2607971..2609434 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254016 NP_461430.1 CDS yfgD NC_003197.1 2609474 2609833 D arsenate reductase 2609474..2609833 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254017 NP_461431.1 CDS yfgE NC_003197.1 2609860 2610585 R controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DnaA regulatory inactivator Hda complement(2609860..2610585) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254018 NP_461432.1 CDS uraA NC_003197.1 2610656 2611945 R uracil transporter complement(2610656..2611945) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254019 NP_461433.1 CDS upp NC_003197.1 2612033 2612659 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(2612033..2612659) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254020 NP_461434.3 CDS purM NC_003197.1 2613073 2614110 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylformylglycinamidine cyclo-ligase 2613073..2614110 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254021 NP_461435.1 CDS purN NC_003197.1 2614110 2614748 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2614110..2614748 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254022 NP_461436.1 CDS ppk NC_003197.1 2614937 2617003 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2614937..2617003 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254023 NP_461437.1 CDS ppx NC_003197.1 2617008 2618549 D exopolyphosphatase 2617008..2618549 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254024 NP_461438.1 CDS STM2503 NC_003197.1 2618585 2620798 R diguanylate cyclase complement(2618585..2620798) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254025 NP_461440.1 CDS STM2505 NC_003197.1 2621103 2621363 R inner membrane protein complement(2621103..2621363) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254027 NP_461441.1 CDS STM2506 NC_003197.1 2621211 2621402 D inner membrane protein 2621211..2621402 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254028 NP_461443.1 CDS STM2508 NC_003197.1 2621943 2622272 D cytoplasmic protein 2621943..2622272 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254030 NP_461444.1 CDS STM2509 NC_003197.1 2622292 2622648 R transposase complement(2622292..2622648) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254031 NP_461445.1 CDS guaA NC_003197.1 2622805 2624382 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; converts ATP and xanthosine 5'-phosphate and L-glutamine and water to AMP and pyrophosphate diphosphate and GMP and L-glutamate; GMP synthase complement(2622805..2624382) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254032 NP_461446.1 CDS guaB NC_003197.1 2624452 2625918 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(2624452..2625918) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254033 NP_461447.1 CDS xseA NC_003197.1 2626079 2627428 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2626079..2627428 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254034 NP_461448.1 CDS shdA NC_003197.1 2627589 2633708 R AIDA autotransporter-like protein complement(2627589..2633708) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254035 NP_461449.1 CDS ratB NC_003197.1 2634402 2641709 R RatB; outer membrane protein complement(2634402..2641709) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254036 NP_461450.1 CDS ratA NC_003197.1 2641875 2647472 R RatA; outer membrane protein complement(2641875..2647472) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254037 NP_461451.1 CDS sinI NC_003197.1 2647592 2648551 R SinI; outer membrane protein complement(2647592..2648551) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254038 NP_461452.1 CDS sinH NC_003197.1 2648609 2650801 R intimin-like protein SinH complement(2648609..2650801) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254039 NP_461453.1 CDS yfgJ NC_003197.1 2651147 2651368 R cytoplasmic protein complement(2651147..2651368) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254040 NP_461454.1 CDS engA NC_003197.1 2651457 2652929 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(2651457..2652929) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254041 NP_461455.1 CDS bamB NC_003197.1 2653048 2654226 R with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; uter membrane protein assembly factor BamB complement(2653048..2654226) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254042 NP_461456.1 CDS yfgM NC_003197.1 2654237 2654857 R inner membrane protein complement(2654237..2654857) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254043 NP_461457.1 CDS hisS NC_003197.1 2654871 2656145 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidine--tRNA ligase complement(2654871..2656145) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254044 NP_461458.1 CDS ispG NC_003197.1 2656256 2657374 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2656256..2657374) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254045 NP_461459.1 CDS yfgA NC_003197.1 2657401 2658405 R cytoskeletal protein RodZ complement(2657401..2658405) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254046 NP_461460.1 CDS yfgB NC_003197.1 2658697 2659863 R 23S rRNA m2A2503 methyltransferase; tRNA m2A37 methyltransferase; methylates the C2 position of the A2530 and A37 nucleotides in 23S rRNA; may be involved in antibiotic resistance; dual-specificity RNA methyltransferase RlmN complement(2658697..2659863) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254047 NP_461461.1 CDS ndk NC_003197.1 2660070 2660501 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(2660070..2660501) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254048 NP_461462.1 CDS STM2527 NC_003197.1 2660622 2661485 R hypothetical protein complement(2660622..2661485) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254049 NP_461463.1 CDS STM2528 NC_003197.1 2661485 2662294 R dimethylsulfoxide reductase subunit C complement(2661485..2662294) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254050 NP_461464.1 CDS STM2529 NC_003197.1 2662287 2662916 R dimethylsulfoxide reductase subunit B complement(2662287..2662916) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254051 NP_461465.1 CDS STM2530 NC_003197.1 2662913 2665318 R dimethylsulfoxide reductase subunit A complement(2662913..2665318) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254052 NP_461466.1 CDS pbpC NC_003197.1 2665447 2667762 R penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1c transglycosylase complement(2665447..2667762) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254053 NP_461467.1 CDS STM2532 NC_003197.1 2667763 2672697 R inner membrane lipoprotein complement(2667763..2672697) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254054 NP_461468.1 CDS sseA NC_003197.1 2672906 2673748 D catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase 2672906..2673748 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254055 NP_461469.1 CDS STM2534 NC_003197.1 2673995 2674663 D cytoplasmic protein 2673995..2674663 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254056 NP_461470.2 CDS sseB NC_003197.1 2675232 2676008 R enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB complement(2675232..2676008) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254057 NP_461471.1 CDS pepB NC_003197.1 2676118 2677401 R catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; peptidase B complement(2676118..2677401) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254058 NP_461472.1 CDS STM2537 NC_003197.1 2677648 2677848 R believed to be involved in assembly of Fe-S clusters; hypothetical protein complement(2677648..2677848) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254059 NP_461473.1 CDS fdx NC_003197.1 2677860 2678195 R electron carrer protein complement(2677860..2678195) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254060 NP_461474.1 CDS hscA NC_003197.1 2678197 2680047 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(2678197..2680047) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254061 NP_461475.1 CDS hscB NC_003197.1 2680060 2680575 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone protein HscB complement(2680060..2680575) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254062 NP_461476.1 CDS iscA NC_003197.1 2680771 2681094 R iron-sulfur cluster assembly protein; forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; iron-binding protein IscA complement(2680771..2681094) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254063 NP_461477.1 CDS STM2542 NC_003197.1 2681123 2681509 R iron-sulfur cluster assembly scaffold protein complement(2681123..2681509) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254064 NP_461478.1 CDS nifS NC_003197.1 2681537 2682751 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase complement(2681537..2682751) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254065 NP_461479.1 CDS yfhP NC_003197.1 2682931 2683425 R regulates the expression of the iscRSUA operon; HTH-type transcriptional regulator IscR complement(2682931..2683425) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254066 NP_461480.1 CDS STM2545 NC_003197.1 2683585 2684316 R tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ complement(2683585..2684316) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254067 NP_461481.1 CDS suhB NC_003197.1 2684435 2685238 D inositol monophosphatase 2684435..2685238 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254068 NP_461482.1 CDS STM2547 NC_003197.1 2685383 2686261 D hypothetical protein 2685383..2686261 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254069 NP_461483.1 CDS asrA NC_003197.1 2686443 2687486 D anaerobic sulfite reductase subunit A (anaerobic sulfite reductaseiron-sulfur subunit) (SW:ASRA_SALTY); anaerobic sulfite reductase subunit A 2686443..2687486 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254070 NP_461484.1 CDS asrB NC_003197.1 2687490 2688308 D with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 2687490..2688308 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254071 NP_461485.1 CDS asrC NC_003197.1 2688319 2689332 D anaerobic sulfite reductase subunit C (SW:ASRC_SALTY); anaerobic sulfite reductase subunit C 2688319..2689332 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254072 NP_461486.1 CDS STM2551 NC_003197.1 2689333 2690319 R inner membrane protein complement(2689333..2690319) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254073 NP_461487.1 CDS STM2552 NC_003197.1 2690310 2690948 R periplasmic protein; hypothetical protein complement(2690310..2690948) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254074 NP_461488.1 CDS csiE NC_003197.1 2691074 2692351 D stationary phase inducible protein CsiE 2691074..2692351 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254075 NP_461489.1 CDS hcaT NC_003197.1 2692346 2693485 R transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; 3-phenylpropionic acid transporter complement(2692346..2693485) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254076 NP_461490.1 CDS glyA NC_003197.1 2693681 2694934 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(2693681..2694934) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254077 NP_461491.1 CDS hmpA NC_003197.1 2695259 2696449 D flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2695259..2696449 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254078 NP_461492.1 CDS cadC NC_003197.1 2696631 2698175 D regulates the cadBA operon; DNA-binding transcriptional activator CadC 2696631..2698175 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254079 NP_461493.1 CDS cadB NC_003197.1 2698536 2699867 D antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; APC family lysine/cadaverine transport protein 2698536..2699867 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254080 NP_461494.1 CDS cadA NC_003197.1 2699950 2702094 D lysine decarboxylase; inducible (SW:DCLY_SALTY); lysine decarboxylase 1 2699950..2702094 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254081 NP_461495.1 CDS yjdL NC_003197.1 2702150 2703610 D di-/tripeptide transport protein 2702150..2703610 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254082 NP_461496.1 CDS glnB NC_003197.1 2703659 2703997 R indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; nitrogen regulatory protein P-II 1 complement(2703659..2703997) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254083 NP_461497.1 CDS glrR NC_003197.1 2704074 2705411 R response regulator GlrR complement(2704074..2705411) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254084 NP_461498.1 CDS STM2563 NC_003197.1 2705408 2706172 R hypothetical protein complement(2705408..2706172) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254085 NP_461499.1 CDS glrK NC_003197.1 2706174 2707616 R sensor kinase GlrK complement(2706174..2707616) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254086 NP_461500.1 CDS purG NC_003197.1 2708254 2712141 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(2708254..2712141) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254087 NP_461501.1 CDS STM2566 NC_003197.1 2712163 2712396 D periplasmic protein 2712163..2712396 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254088 NP_461502.1 CDS yfhD NC_003197.1 2712397 2713941 D member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; lytic murein transglycosylase F 2712397..2713941 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254089 NP_461503.1 CDS yfhC NC_003197.1 2713992 2714543 R tRNA-specific adenosine deaminase complement(2713992..2714543) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254090 NP_461504.1 CDS STM2569 NC_003197.1 2714568 2715203 R hypothetical protein complement(2714568..2715203) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254091 NP_461505.1 CDS STM2570 NC_003197.1 2715207 2716568 R PTS system transporter subunit IIB complement(2715207..2716568) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254092 NP_461506.1 CDS murQ NC_003197.1 2716579 2717472 R catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase complement(2716579..2717472) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254093 NP_461507.1 CDS yfhH NC_003197.1 2717588 2718436 D ABC superfamily membrane protein; DNA-binding transcriptional regulator 2717588..2718436 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254094 NP_461508.1 CDS STM2573 NC_003197.1 2718475 2719392 R catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase complement(2718475..2719392) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254095 NP_461509.1 CDS STM2574 NC_003197.1 2719414 2720610 R permease complement(2719414..2720610) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254096 NP_461510.1 CDS STM2575 NC_003197.1 2720726 2721652 D LysR family transcriptional regulator 2720726..2721652 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254097 NP_461511.1 CDS yfhL NC_003197.1 2721690 2721950 D ferredoxin 2721690..2721950 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254098 NP_461512.1 CDS acpS NC_003197.1 2722062 2722442 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; holo-ACP synthase complement(2722062..2722442) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254099 NP_461513.1 CDS pdxJ NC_003197.1 2722442 2723173 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(2722442..2723173) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254100 NP_461514.1 CDS recO NC_003197.1 2723185 2723913 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(2723185..2723913) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254101 NP_461515.1 CDS era NC_003197.1 2723925 2724830 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTPase Era complement(2723925..2724830) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254102 NP_461516.1 CDS rnc NC_003197.1 2724827 2725507 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(2724827..2725507) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254103 NP_461517.1 CDS lepB NC_003197.1 2725781 2726755 R catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I complement(2725781..2726755) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254104 NP_461518.1 CDS lepA NC_003197.1 2726772 2728571 R binds to the ribosome on the universally-conserved alpha-sarcin loop; elongation factor 4 complement(2726772..2728571) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254105 NP_461519.1 CDS STM2584 NC_003197.1 2728976 2730469 D leucine-rich repeat protein; hypothetical protein 2728976..2730469 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254106 NP_461520.1 CDS STM2585 NC_003197.1 2731356 2731901 D hypothetical protein 2731356..2731901 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254107 NP_461521.1 CDS STM2585A NC_003197.1 2733013 2733240 D PagK-like protein 2733013..2733240 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254108 NP_461522.1 CDS STM2586 NC_003197.1 2733337 2733915 R phage tail assembly protein; phage tail assembly-like protein complement(2733337..2733915) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254109 NP_461523.1 CDS STM2587 NC_003197.1 2733905 2734729 R phage tail assembly protein; phage tail assembly-like protein complement(2733905..2734729) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254110 NP_461524.1 CDS STM2588 NC_003197.1 2734726 2737098 R tail fiber-like protein complement(2734726..2737098) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254111 NP_461525.1 CDS STM2589 NC_003197.1 2737516 2740794 R host specificity protein J complement(2737516..2740794) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254112 NP_461526.1 CDS STM2590 NC_003197.1 2740856 2741503 R tail assembly protein I complement(2740856..2741503) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254113 NP_461527.1 CDS STM2591 NC_003197.1 2741401 2742000 R tail assembly protein K complement(2741401..2742000) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254114 NP_461528.1 CDS STM2592 NC_003197.1 2742145 2742843 R phage tail component L-like protein complement(2742145..2742843) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254115 NP_461529.1 CDS STM2593 NC_003197.1 2742853 2743182 R phage tail component M-like protein complement(2742853..2743182) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254116 NP_461530.1 CDS STM2594 NC_003197.1 2743185 2746280 R phage tail component H-like protein complement(2743185..2746280) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254117 NP_461531.1 CDS STM2595 NC_003197.1 2746252 2746590 R minor tail-like protein complement(2746252..2746590) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254118 NP_461532.1 CDS STM2596 NC_003197.1 2746587 2746982 R minor tail-like protein complement(2746587..2746982) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254119 NP_461533.1 CDS STM2597 NC_003197.1 2747033 2747779 R major tail-like protein complement(2747033..2747779) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254120 NP_461534.1 CDS STM2598 NC_003197.1 2747787 2748188 R hypothetical protein complement(2747787..2748188) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254121 NP_461535.1 CDS STM2599 NC_003197.1 2748177 2749427 D transposase 2748177..2749427 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254122 NP_461536.1 CDS STM2600 NC_003197.1 2749476 2750054 R minor tail protein Z-like complement(2749476..2750054) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254123 NP_461537.1 CDS STM2601 NC_003197.1 2750082 2750465 R minor capsid protein FII complement(2750082..2750465) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254124 NP_461538.1 CDS STM2602 NC_003197.1 2750476 2750835 R DNA packaging protein complement(2750476..2750835) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254125 NP_461539.1 CDS STM2603 NC_003197.1 2750893 2751921 R phage head-like protein complement(2750893..2751921) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254126 NP_461540.1 CDS STM2604 NC_003197.1 2751976 2752323 R phage head-like protein complement(2751976..2752323) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254127 NP_461541.1 CDS STM2605 NC_003197.1 2752336 2753832 R head-tail preconnector-like protein complement(2752336..2753832) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254128 NP_461542.1 CDS STM2606 NC_003197.1 2753822 2755402 R head-tail preconnector-like protein complement(2753822..2755402) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254129 NP_461543.1 CDS STM2607 NC_003197.1 2755399 2755602 R head-to-tail joining-like protein complement(2755399..2755602) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254130 NP_461544.1 CDS STM2608 NC_003197.1 2755586 2757517 R terminase-like large protein complement(2755586..2757517) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254131 NP_461545.1 CDS STM2609 NC_003197.1 2757539 2758033 R DNA packaging-like protein complement(2757539..2758033) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254132 NP_461546.1 CDS STM2610 NC_003197.1 2758320 2758721 D periplasmic lysozyme inhibitor 2758320..2758721 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254133 NP_461547.2 CDS STM2611.S NC_003197.1 2758957 2759430 R endopeptidase-like protein complement(2758957..2759430) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254134 NP_461548.1 CDS STM2612 NC_003197.1 2759427 2759879 R lysozyme complement(2759427..2759879) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254135 NP_461549.1 CDS STM2613 NC_003197.1 2759863 2760192 R phage holin family protein complement(2759863..2760192) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254136 NP_461550.1 CDS STM2614 NC_003197.1 2760468 2761154 D hypothetical protein 2760468..2761154 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254137 YP_006892401.1 CDS STM05520 NC_003197.1 2761369 2761557 R hypothetical protein complement(2761369..2761557) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865714 NP_461551.1 CDS STM2616 NC_003197.1 2762064 2762627 R antirepressor-like protein complement(2762064..2762627) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254139 NP_461552.1 CDS STM2617 NC_003197.1 2762900 2763577 R antiterminator-like protein complement(2762900..2763577) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254140 NP_461553.1 CDS STM2618 NC_003197.1 2763574 2763714 R hypothetical protein complement(2763574..2763714) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254141 NP_461554.1 CDS STM2619 NC_003197.1 2763711 2764322 R hypothetical protein complement(2763711..2764322) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254142 NP_461555.1 CDS STM2620 NC_003197.1 2764531 2765133 R hypothetical protein complement(2764531..2765133) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254143 YP_006892402.1 CDS STM05530 NC_003197.1 2765216 2765437 R hypothetical protein complement(2765216..2765437) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865728 NP_461556.1 CDS STM2621 NC_003197.1 2765549 2765782 R hypothetical protein complement(2765549..2765782) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254144 NP_461557.1 CDS STM2622 NC_003197.1 2766074 2766367 R hypothetical protein complement(2766074..2766367) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254145 NP_461558.1 CDS STM2623 NC_003197.1 2766442 2766753 R hypothetical protein complement(2766442..2766753) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254146 NP_461559.1 CDS STM2624 NC_003197.1 2766750 2767097 R hypothetical protein complement(2766750..2767097) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254147 NP_461560.1 CDS STM2625 NC_003197.1 2767108 2767857 R acts to load the DnaB helicase onto the intiation site durning DNA replication; replication protein complement(2767108..2767857) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254148 NP_461561.1 CDS STM2626 NC_003197.1 2767860 2768843 R replication protein 15-like protein complement(2767860..2768843) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254149 NP_461562.1 CDS STM2627 NC_003197.1 2768928 2769302 R cI-like protein complement(2768928..2769302) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254150 NP_461563.1 CDS STM2628 NC_003197.1 2769627 2770037 D probable regulatory protein; regulatory protein 2769627..2770037 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254151 NP_461564.1 CDS STM2629 NC_003197.1 2770087 2770347 D hypothetical protein 2770087..2770347 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254152 NP_461565.1 CDS STM2630 NC_003197.1 2770340 2770498 D hypothetical protein 2770340..2770498 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254153 NP_461566.1 CDS STM2631 NC_003197.1 2770520 2770870 D hypothetical protein 2770520..2770870 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254154 NP_461567.1 CDS STM2632 NC_003197.1 2770997 2773882 D exodeoxyribonuclease VIII-like protein 2770997..2773882 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254155 NP_461568.2 CDS STM2633.S NC_003197.1 2773893 2775002 D enterohemolysin 1-like protein 2773893..2775002 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254156 NP_461569.1 CDS STM2634 NC_003197.1 2775045 2775284 D hypothetical protein 2775045..2775284 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254157 NP_461570.1 CDS STM2635 NC_003197.1 2775325 2775609 D excisionase-like protein 2775325..2775609 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254158 NP_461571.1 CDS STM2636 NC_003197.1 2775587 2776816 R integrase-like protein complement(2775587..2776816) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254159 NP_461572.1 CDS rseC NC_003197.1 2777314 2777793 R involved in the reduction of the SoxR iron-sulfur cluster; SoxR reducing system protein RseC complement(2777314..2777793) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254160 NP_461573.1 CDS rseB NC_003197.1 2777790 2778746 R periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; anti-sigma E factor RseB complement(2777790..2778746) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254161 NP_461574.1 CDS rseA NC_003197.1 2778746 2779396 R anti-sigma E factor RseA complement(2778746..2779396) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254162 NP_461575.1 CDS rpoE NC_003197.1 2779428 2780003 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; ECF RNA polymerase sigma factor RpoE complement(2779428..2780003) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254163 NP_461576.1 CDS nadB NC_003197.1 2780428 2782050 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2780428..2782050 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254164 NP_461577.1 CDS yfiC NC_003197.1 2782035 2782772 R tRNA1(Val) (adenine(37)-N6)-methyltransferase complement(2782035..2782772) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254165 NP_461578.1 CDS srmB NC_003197.1 2782903 2784237 D facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 2782903..2784237 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254166 NP_461579.1 CDS yfiE NC_003197.1 2784255 2785154 R LysR family transcriptional regulator complement(2784255..2785154) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254167 NP_461580.1 CDS yfiK NC_003197.1 2785257 2785844 D cysteine/O-acetylserine efflux protein 2785257..2785844 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254168 NP_461581.1 CDS yfiD NC_003197.1 2785906 2786289 R stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor complement(2785906..2786289) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254169 NP_461582.1 CDS ung NC_003197.1 2786608 2787297 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 2786608..2787297 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254170 NP_461583.1 CDS yfiF NC_003197.1 2787413 2788450 R tRNA/rRNA methyltransferase complement(2787413..2788450) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254171 NP_461584.1 CDS trxC NC_003197.1 2788654 2789073 D thioredoxin 2 2788654..2789073 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254172 NP_461585.1 CDS yfiP NC_003197.1 2789146 2789826 D cytoplasmic protein 2789146..2789826 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254173 NP_461586.1 CDS STM2651 NC_003197.1 2789880 2792540 D protein lysine acetyltransferase 2789880..2792540 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254174 NP_461587.1 CDS pssA NC_003197.1 2792655 2794010 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2792655..2794010 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254175 NP_461588.1 CDS yfiM NC_003197.1 2794055 2794378 D outer membrane lipoprotein 2794055..2794378 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254176 NP_461589.1 CDS kgtP NC_003197.1 2794375 2795676 R alpha-ketoglutarate transporter complement(2794375..2795676) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254177 NP_461590.1 CDS STM2655 NC_003197.1 2795780 2796235 R cytoplasmic protein complement(2795780..2796235) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254178 NP_461591.1 CDS clpB NC_003197.1 2802116 2804689 R chaperone protein ClpB complement(2802116..2804689) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254183 NP_461592.1 CDS yfiH NC_003197.1 2804819 2805550 R inner membrane protein complement(2804819..2805550) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254184 NP_461593.1 CDS rluD NC_003197.1 2805547 2806527 R responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; rRNA large subunit pseudouridine synthase D complement(2805547..2806527) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254185 NP_461594.1 CDS yfiO NC_003197.1 2806659 2807396 D with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline; outer membrane protein assembly factor BamD 2806659..2807396 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254186 NP_461595.1 CDS yfiA NC_003197.1 2807668 2808006 D associated with 30S ribosomal subunit; interferes with translation elongation; translation inhibitor protein RaiA 2807668..2808006 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254188 NP_461597.1 CDS pheA NC_003197.1 2808257 2809417 D catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; bifunctional chorismate mutase/prephenate dehydratase 2808257..2809417 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254190 NP_461598.1 CDS STM2668 NC_003197.1 2809378 2810286 R cytoplasmic protein complement(2809378..2810286) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254191 NP_461599.1 CDS tyrA NC_003197.1 2810344 2811465 R catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase complement(2810344..2811465) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254192 NP_461600.1 CDS aroF NC_003197.1 2811475 2812545 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2811475..2812545) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254193 NP_461601.1 CDS yfiR NC_003197.1 2812985 2813503 D periplasmic protein 2812985..2813503 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254194 NP_461602.1 CDS yfiN NC_003197.1 2813496 2814716 D diguanylate cyclase/phosphodiesterase 2813496..2814716 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254195 NP_461603.1 CDS rplS NC_003197.1 2814873 2815220 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(2814873..2815220) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254196 NP_461604.1 CDS trmD NC_003197.1 2815261 2816028 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(2815261..2816028) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254197 NP_461605.1 CDS rimM NC_003197.1 2816073 2816621 R Essential for efficient processing of 16S rRNA; ribosome maturation factor RimM complement(2816073..2816621) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254198 NP_461606.1 CDS rpsP NC_003197.1 2816640 2816888 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(2816640..2816888) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254199 NP_461607.1 CDS ffh NC_003197.1 2817202 2818563 R with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein complement(2817202..2818563) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254200 NP_461608.1 CDS STM2678 NC_003197.1 2818729 2819520 D hypothetical protein 2818729..2819520 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254201 NP_461609.2 CDS yfjD NC_003197.1 2819630 2820826 D membrane protein 2819630..2820826 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254202 NP_461610.1 CDS STM2680 NC_003197.1 2820947 2821552 D cytoplasmic protein 2820947..2821552 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254203 NP_461611.1 CDS grpE NC_003197.1 2821587 2822177 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(2821587..2822177) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254204 NP_461613.1 CDS ppnK NC_003197.1 2822300 2823178 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2822300..2823178 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254206 NP_461614.1 CDS recN NC_003197.1 2823264 2824925 D DNA repair protein RecN 2823264..2824925 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254207 NP_461615.1 CDS bamE NC_003197.1 2825074 2825412 D outer membrane protein assembly factor BamE 2825074..2825412 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254208 NP_461616.1 CDS STM2686 NC_003197.1 2825578 2825868 R hypothetical protein complement(2825578..2825868) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254209 NP_461617.1 CDS yfjG NC_003197.1 2825858 2826334 R lipid transport protein; oligoketide cyclase/lipid transport protein complement(2825858..2826334) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254210 NP_461618.1 CDS smpB NC_003197.1 2826484 2826966 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2826484..2826966 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254211 NP_461619.1 CDS STM2690 NC_003197.1 2839118 2840527 D outer membrane efflux protein 2839118..2840527 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254213 NP_461620.1 CDS STM2691 NC_003197.1 2840524 2842704 D hypothetical protein 2840524..2842704 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254214 NP_461621.1 CDS STM2692 NC_003197.1 2842712 2843875 D HlyD family secretion protein 2842712..2843875 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254215 NP_461622.1 CDS STM2694 NC_003197.1 2844427 2844645 R late control-like protein complement(2844427..2844645) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254217 NP_461623.1 CDS STM2695 NC_003197.1 2844714 2845814 R late control-like protein complement(2844714..2845814) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254218 NP_461624.1 CDS STM2696 NC_003197.1 2845811 2846296 R phage tail protein complement(2845811..2846296) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254219 NP_461625.1 CDS STM2697 NC_003197.1 2846293 2849100 R phage tail-like protein complement(2846293..2849100) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254220 NP_461626.1 CDS STM2698 NC_003197.1 2849093 2849212 R gpE-like protein complement(2849093..2849212) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254221 NP_461627.1 CDS STM2699 NC_003197.1 2849227 2849529 R phage tail-like protein complement(2849227..2849529) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254222 NP_461628.1 CDS STM2700 NC_003197.1 2849584 2850099 R phage tail fiber-like protein complement(2849584..2850099) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254223 NP_461629.1 CDS STM2701 NC_003197.1 2850109 2851281 R phage tail sheath-like protein complement(2850109..2851281) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254224 NP_461630.1 CDS STM2702 NC_003197.1 2851384 2851941 R DNA invertase-like protein complement(2851384..2851941) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254225 NP_461631.1 CDS STM2703 NC_003197.1 2851911 2852990 D hypothetical protein 2851911..2852990 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254226 NP_461632.1 CDS STM2704 NC_003197.1 2852997 2853404 D tail fiber assembly-like protein 2852997..2853404 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254227 NP_461633.1 CDS STM2705 NC_003197.1 2853408 2854025 R hypothetical protein complement(2853408..2854025) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254228 NP_461634.1 CDS STM2706 NC_003197.1 2853995 2855569 R phage tail-like protein complement(2853995..2855569) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254229 NP_461635.1 CDS STM2707 NC_003197.1 2855566 2856171 R phage tail-like protein complement(2855566..2856171) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254230 NP_461636.1 CDS STM2708 NC_003197.1 2856164 2857072 R phage tail-like protein complement(2856164..2857072) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254231 NP_461637.1 CDS STM2709 NC_003197.1 2857059 2857418 R base plate tail-like protein complement(2857059..2857418) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254232 NP_461638.1 CDS STM2710 NC_003197.1 2857415 2857993 R phage baseplate assembly-like protein complement(2857415..2857993) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254233 NP_461639.1 CDS STM2711 NC_003197.1 2858062 2858508 R phage tail-like protein complement(2858062..2858508) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254234 NP_461640.1 CDS STM2712 NC_003197.1 2858501 2858932 R phage tail-like protein complement(2858501..2858932) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254235 NP_461641.1 CDS STM2713 NC_003197.1 2858895 2859179 R hypothetical protein complement(2858895..2859179) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254236 NP_461642.1 CDS STM2714 NC_003197.1 2859028 2859456 R lysis-like protein complement(2859028..2859456) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254237 NP_461643.2 CDS STM2715.S NC_003197.1 2859833 2860309 R prophage lysozyme complement(2859833..2860309) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254238 NP_461644.1 CDS STM2716 NC_003197.1 2860323 2860538 R phage-holin-like protein complement(2860323..2860538) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254239 NP_461645.1 CDS STM2717 NC_003197.1 2860542 2860745 R phage tail-like protein complement(2860542..2860745) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254240 NP_461646.1 CDS STM2718 NC_003197.1 2860745 2861209 R head completion-like protein complement(2860745..2861209) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254241 NP_461647.1 CDS STM2719 NC_003197.1 2861303 2861956 R terminase-like protein complement(2861303..2861956) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254242 NP_461648.1 CDS STM2720 NC_003197.1 2861960 2863042 R major capsid-like protein complement(2861960..2863042) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254243 NP_461649.1 CDS STM2721 NC_003197.1 2863059 2863892 R capsid scaffold-like protein complement(2863059..2863892) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254244 NP_461650.1 CDS STM2722 NC_003197.1 2864035 2865801 D terminase-like protein 2864035..2865801 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254245 NP_461651.1 CDS STM2723 NC_003197.1 2865801 2866841 D portal vertex-like protein 2865801..2866841 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254246 NP_461652.2 CDS STM2724 NC_003197.1 2866927 2868624 R hypothetical protein complement(2866927..2868624) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254247 NP_461653.1 CDS STM2726 NC_003197.1 2868892 2869623 R hypothetical protein complement(2868892..2869623) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254249 NP_461654.1 CDS STM2727 NC_003197.1 2869683 2869988 R hypothetical protein complement(2869683..2869988) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254250 NP_461655.1 CDS STM2728 NC_003197.1 2869927 2870115 R hypothetical protein complement(2869927..2870115) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254251 NP_461656.1 CDS STM2729 NC_003197.1 2870268 2872697 R from prophage-like region; replication endonuclease complement(2870268..2872697) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254252 NP_461657.1 CDS STM2730 NC_003197.1 2872688 2873545 R DNA adenine methylase complement(2872688..2873545) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254253 NP_461658.1 CDS STM2731 NC_003197.1 2873542 2873769 R hypothetical protein complement(2873542..2873769) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254254 NP_461659.1 CDS STM2732 NC_003197.1 2873769 2874002 R hypothetical protein complement(2873769..2874002) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254255 NP_461660.1 CDS STM2733 NC_003197.1 2874070 2874411 R hypothetical protein complement(2874070..2874411) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254256 NP_461661.1 CDS STM2734 NC_003197.1 2874631 2875089 D hypothetical protein 2874631..2875089 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254257 NP_461662.1 CDS STM2735 NC_003197.1 2875037 2875270 R hypothetical protein complement(2875037..2875270) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254258 NP_461663.1 CDS STM2736 NC_003197.1 2875278 2875787 R hypothetical protein complement(2875278..2875787) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254259 NP_461664.1 CDS STM2737 NC_003197.1 2875823 2876062 R hypothetical protein complement(2875823..2876062) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254260 NP_461665.1 CDS STM2738 NC_003197.1 2876179 2876811 D hypothetical protein 2876179..2876811 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254261 NP_461666.1 CDS STM2739 NC_003197.1 2876815 2877840 D phage tail-like protein 2876815..2877840 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254262 NP_461667.1 CDS STM2740 NC_003197.1 2878169 2879233 D integrase-like protein 2878169..2879233 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254263 NP_945167.1 CDS STM2740.1N NC_003197.1 2879247 2879414 D hypothetical protein 2879247..2879414 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673740 NP_461668.1 CDS STM2741 NC_003197.1 2879461 2880054 D periplasmic protein 2879461..2880054 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254264 NP_461669.1 CDS STM2742 NC_003197.1 2880444 2881637 D cytoplasmic protein 2880444..2881637 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254265 NP_461670.1 CDS STM2743 NC_003197.1 2881972 2882799 R cytoplasmic protein complement(2881972..2882799) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254266 NP_461671.1 CDS STM2744 NC_003197.1 2883250 2883465 D cytoplasmic protein 2883250..2883465 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254267 NP_461672.1 CDS STM2745 NC_003197.1 2883501 2885570 D inner membrane protein 2883501..2885570 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254268 NP_461673.1 CDS STM2746 NC_003197.1 2886073 2887356 D excinuclease; ATPase 2886073..2887356 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254269 NP_461674.1 CDS STM2747 NC_003197.1 2887401 2888219 D cytoplasmic protein 2887401..2888219 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254270 NP_461675.1 CDS STM2748 NC_003197.1 2888373 2888729 R transcriptional regulator complement(2888373..2888729) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254271 NP_461676.1 CDS STM2749 NC_003197.1 2888824 2889108 D cytoplasmic protein 2888824..2889108 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254272 NP_461677.1 CDS STM2750 NC_003197.1 2889221 2889742 D PTS system glucitol/sorbitol-specific transporter subunit IIC 2889221..2889742 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254273 NP_461678.1 CDS STM2751 NC_003197.1 2889739 2890113 D PTS system glucitol/sorbitol-specific transporter subunit IIA 2889739..2890113 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254274 NP_461679.1 CDS STM2752 NC_003197.1 2890110 2891090 D PTS system glucitol/sorbitol-specific transporter subunit IIB 2890110..2891090 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254275 NP_461680.1 CDS STM2753 NC_003197.1 2891101 2892114 D dehydrogenase 2891101..2892114 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254276 NP_461681.1 CDS STM2754 NC_003197.1 2892409 2893611 D hypothetical protein 2892409..2893611 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254277 NP_461682.1 CDS STM2755 NC_003197.1 2893685 2894320 R hexulose 6 phosphate synthase complement(2893685..2894320) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254278 NP_461683.1 CDS STM2756 NC_003197.1 2894344 2894907 R sugar phosphate aminotransferase complement(2894344..2894907) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254279 NP_461684.1 CDS STM2757 NC_003197.1 2894907 2895749 R cytoplasmic protein complement(2894907..2895749) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254280 NP_461685.1 CDS STM2758 NC_003197.1 2895879 2897420 R PTS system transporter subunit IIBC complement(2895879..2897420) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254281 NP_461686.1 CDS STM2759 NC_003197.1 2897643 2899322 D dipeptide/oligopeptide/nickel ABC-type ABC transporter substrate-binding protein 2897643..2899322 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254282 NP_461687.1 CDS STM2760 NC_003197.1 2900439 2901314 D integrase 2900439..2901314 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254283 NP_461688.1 CDS STM2761 NC_003197.1 2901480 2903354 D inner membrane protein 2901480..2903354 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254284 NP_461689.1 CDS STM2762 NC_003197.1 2903614 2904897 R inner membrane protein complement(2903614..2904897) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254285 NP_461692.1 CDS STM2765 NC_003197.1 2907066 2907332 R transposase complement(2907066..2907332) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254288 NP_461693.1 CDS STM2766 NC_003197.1 2907785 2908423 R cytoplasmic protein complement(2907785..2908423) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254289 NP_461694.1 CDS STM2767 NC_003197.1 2908420 2910402 R superfamily I; DNA/RNA helicase complement(2908420..2910402) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254290 NP_461695.1 CDS STM2768 NC_003197.1 2910681 2910980 D transposase 2910681..2910980 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254291 NP_461696.1 CDS STM2769 NC_003197.1 2910977 2911843 D transposase 2910977..2911843 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254292 NP_461697.1 CDS fljA NC_003197.1 2912623 2913162 R repressor of fliC (SW:FLJA_SALTY); flagellar synthesis; phase-1 flagellin repressor complement(2912623..2913162) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254293 NP_461698.1 CDS fljB NC_003197.1 2913230 2914750 R structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; phase 2 flagellin complement(2913230..2914750) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254294 NP_461699.1 CDS hin NC_003197.1 2914842 2915414 D DNA-invertase hin (SW:HIN_SALTY); regulation of flagellar gene expression by site-specific H inversion of DNA; DNA-invertase Hin 2914842..2915414 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254295 NP_461700.1 CDS iroB NC_003197.1 2916377 2917492 D related to UDP-glucuronosyltransferase; glycosyl transferase 2916377..2917492 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254296 NP_461701.1 CDS iroC NC_003197.1 2917573 2921226 D ABC transporter ATP-binding protein 2917573..2921226 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254297 NP_461702.1 CDS iroD NC_003197.1 2921336 2922580 D enterochelin esterase-like protein 2921336..2922580 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254298 NP_461703.1 CDS iroE NC_003197.1 2922612 2923547 D alpha/beta superfamily; alpha/beta superfamily hydrolase 2922612..2923547 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254299 NP_461704.2 CDS iroN NC_003197.1 2923589 2925763 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; iron-enterobactin outer membrane transporter FepA complement(2923589..2925763) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254300 NP_461706.1 CDS pipB2 NC_003197.1 2926802 2927854 R secreted effector protein PipB2 complement(2926802..2927854) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254303 NP_461707.1 CDS virK NC_003197.1 2928373 2929302 D VirK-like protein 2928373..2929302 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254304 NP_461708.1 CDS mig-14 NC_003197.1 2929595 2930491 D transcriptional activator 2929595..2930491 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254305 NP_461709.1 CDS nixA NC_003197.1 2931213 2932226 R nickel transporter complement(2931213..2932226) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254306 NP_461710.1 CDS tctE NC_003197.1 2932359 2933774 R tricarboxylic transport regulatory protein complement(2932359..2933774) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254307 NP_461711.1 CDS tctD NC_003197.1 2933761 2934435 R transcriptional regulatory protein TctD (SW:TCTD_SALTY); tricarboxylic transport; transcriptional regulator TctD complement(2933761..2934435) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254308 NP_461712.1 CDS STM2786 NC_003197.1 2934590 2935567 D tricarboxylic transport protein 2934590..2935567 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254309 NP_461713.2 CDS STM2787 NC_003197.1 2935582 2936013 D tricarboxylic transport 2935582..2936013 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254310 NP_461714.1 CDS STM2788 NC_003197.1 2936024 2937538 D tricarboxylic transport protein 2936024..2937538 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254311 NP_461715.2 CDS STM2789 NC_003197.1 2937841 2938818 D in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; carbon starvation protein CsiD 2937841..2938818 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254312 NP_461716.1 CDS ygaF NC_003197.1 2938844 2940112 D catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 2938844..2940112 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254313 NP_461717.1 CDS gabD NC_003197.1 2940134 2941582 D catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 2940134..2941582 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254314 NP_461718.1 CDS gabT NC_003197.1 2941597 2942880 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 2941597..2942880 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254315 NP_461719.1 CDS gabP NC_003197.1 2943010 2944410 D RpoS dependent gamma-aminobutyrate transport protein 2943010..2944410 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254316 NP_461720.1 CDS ygaE NC_003197.1 2944452 2945129 D regulator of gab gene expression; GntR family transcriptional repressor 2944452..2945129 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254317 NP_461721.1 CDS ygaU NC_003197.1 2945151 2945600 R LysM domain; LysM domain/BON superfamily protein complement(2945151..2945600) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254318 NP_461722.1 CDS yqaE NC_003197.1 2945700 2945858 R YqaE family; transporter complement(2945700..2945858) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254319 NP_461723.1 CDS STM2797 NC_003197.1 2946041 2946340 D ArsR family; ArsR family regulatory protein 2946041..2946340 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254320 NP_461724.1 CDS ygaP NC_003197.1 2946350 2946877 D rhodanese-like sulfurtransferase 2946350..2946877 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254321 YP_006892403.1 CDS STM05615 NC_003197.1 2946956 2947135 D hypothetical protein 2946956..2947135 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865709 NP_461725.1 CDS stpA NC_003197.1 2947225 2947626 R DNA-binding protein STPA (SW:STPA_SALTY); has chaperone activity; DNA binding protein StpA complement(2947225..2947626) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254322 NP_461726.1 CDS STM2800 NC_003197.1 2948325 2948774 D L-alanine exporter AlaE 2948325..2948774 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254323 NP_461727.1 CDS ygaC NC_003197.1 2948809 2949159 R cytoplasmic protein complement(2948809..2949159) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254324 NP_461728.1 CDS ygaM NC_003197.1 2949309 2949647 D inner membrane protein 2949309..2949647 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254325 NP_461729.1 CDS STM2803 NC_003197.1 2949731 2951065 R GntR family regulatory protein complement(2949731..2951065) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254326 NP_461730.1 CDS STM2804 NC_003197.1 2951154 2951585 D cytoplasmic protein 2951154..2951585 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254327 NP_951053.1 CDS STM2804.1n NC_003197.1 2951582 2951758 D hypothetical protein 2951582..2951758 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673735 NP_461731.1 CDS nrdH NC_003197.1 2951857 2952102 D glutaredoxin-like protein NrdH (SW:NRDH_SALTY); hydrogen donor; glutaredoxin-like protein 2951857..2952102 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254328 NP_461732.1 CDS nrdI NC_003197.1 2952099 2952509 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 2952099..2952509 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254329 NP_461733.1 CDS nrdE NC_003197.1 2952482 2954626 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2952482..2954626 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254330 NP_461734.1 CDS nrdF NC_003197.1 2954637 2955596 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 2954637..2955596 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254331 NP_461735.1 CDS proV NC_003197.1 2955951 2957153 D with ProWX is involved in the high-affinity uptake of glycine betaine; glycine betaine ABC transporter ATP-binding protein ProV 2955951..2957153 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254332 NP_461736.1 CDS proW NC_003197.1 2957146 2958210 D with ProVX is involved in the high-affinity uptake of glycine betaine; glycine betaine ABC transporter premease ProW 2957146..2958210 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254333 NP_461737.1 CDS proX NC_003197.1 2958280 2959275 D with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine ABC transporter substrate-binding protein ProX 2958280..2959275 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254334 NP_461738.1 CDS STM2812 NC_003197.1 2959440 2960624 D inner membrane protein 2959440..2960624 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254335 NP_461739.1 CDS emrR NC_003197.1 2961121 2961651 D DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; transcriptional repressor 2961121..2961651 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254336 NP_461740.1 CDS emrA NC_003197.1 2961778 2962950 D multidrug resistance secretion protein 2961778..2962950 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254337 NP_461741.1 CDS emrB NC_003197.1 2962967 2964505 D multidrug transport protein 2962967..2964505 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254338 NP_461742.1 CDS STM2816 NC_003197.1 2964554 2965924 R glycoporin complement(2964554..2965924) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254339 NP_461743.1 CDS luxS NC_003197.1 2966270 2966785 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteine lyase complement(2966270..2966785) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254340 NP_461744.1 CDS gshA NC_003197.1 2966935 2968491 R involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase complement(2966935..2968491) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254341 NP_461745.1 CDS yqaA NC_003197.1 2968568 2968993 R inner membrane protein complement(2968568..2968993) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254342 NP_461746.1 CDS yqaB NC_003197.1 2968990 2969556 R YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent; bifunctional fructose-1 phosphate/6-phosphogluconate phosphatase complement(2968990..2969556) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254343 NP_461747.1 CDS csrA NC_003197.1 2970951 2971136 R affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator complement(2970951..2971136) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254349 NP_461748.1 CDS alaS NC_003197.1 2971371 2974001 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanine--tRNA ligase complement(2971371..2974001) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254350 NP_461749.1 CDS recX NC_003197.1 2974237 2974737 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(2974237..2974737) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254351 NP_461750.1 CDS recA NC_003197.1 2974854 2975915 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(2974854..2975915) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254352 NP_461751.1 CDS ygaD NC_003197.1 2976000 2976497 R NMN amidohydrolase complement(2976000..2976497) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254353 NP_461752.1 CDS mltB NC_003197.1 2976975 2978054 R membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B complement(2976975..2978054) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254354 NP_461753.1 CDS srlA NC_003197.1 2978308 2978871 D PTS system glucitol/sorbitol-specific transporter subunit IIC 2978308..2978871 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254355 NP_461754.1 CDS srlE NC_003197.1 2978868 2979839 D PTS system glucitol/sorbitol-specific transporter subunit IICB 2978868..2979839 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254356 NP_461755.1 CDS slrB NC_003197.1 2979851 2980213 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucitol/sorbitol-specific transporter subunit IIA 2979851..2980213 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254357 NP_461756.1 CDS srlD NC_003197.1 2980225 2981004 D catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; glucitol/sorbitol-6-phosphate dehydrogenase 2980225..2981004 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254358 NP_461757.1 CDS gutM NC_003197.1 2981080 2981439 D regulator for glucitol utilization; DNA-binding transcriptional activator GutM 2981080..2981439 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254359 NP_461758.1 CDS srlR NC_003197.1 2981637 2982410 D regulates genes involved in glucitol utilization; DNA-binding transcriptional repressor SrlR 2981637..2982410 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254360 NP_461759.2 CDS gutQ NC_003197.1 2982403 2983368 D catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate; arabinose 5-phosphate isomerase GutQ 2982403..2983368 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254361 NP_461760.1 CDS ygaA NC_003197.1 2983365 2984885 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator complement(2983365..2984885) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254362 NP_461761.1 CDS STM2840 NC_003197.1 2985071 2986510 D detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 2985071..2986510 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254363 NP_461762.1 CDS ygbD NC_003197.1 2986507 2987640 D catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 2986507..2987640 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254364 NP_461763.1 CDS hypF NC_003197.1 2987737 2989977 R hydrogenase maturation protein complement(2987737..2989977) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254365 NP_461764.1 CDS hydN NC_003197.1 2990123 2990668 R involved in electron transport from formate to hydrogen; electron transport protein HydN complement(2990123..2990668) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254366 NP_461765.1 CDS STM2844 NC_003197.1 2990869 2991678 R periplasmic protein; hypothetical protein complement(2990869..2991678) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254367 NP_461766.1 CDS hycI NC_003197.1 2991705 2992175 R involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease complement(2991705..2992175) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254368 NP_461767.1 CDS hycH NC_003197.1 2992168 2992578 R hydrogenase 3 large subunit processing protein complement(2992168..2992578) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254369 NP_461768.1 CDS hycG NC_003197.1 2992575 2993342 R hydrogenase complement(2992575..2993342) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254370 NP_461769.1 CDS hycF NC_003197.1 2993342 2993884 R electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate; formate hydrogenlyase complex iron-sulfur subunit complement(2993342..2993884) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254371 NP_461770.1 CDS hycE NC_003197.1 2993894 2995603 R hydrogenase 3 large subunit complement(2993894..2995603) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254372 NP_461771.1 CDS hycD NC_003197.1 2995621 2996544 R hydrogenase 3 membrane subunit complement(2995621..2996544) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254373 NP_461772.1 CDS hycC NC_003197.1 2996547 2998373 R catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3); hydrogenase 3 membrane subunit complement(2996547..2998373) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254374 NP_461773.1 CDS hycB NC_003197.1 2998373 2998981 R hydrogenase-3 iron-sulfur subunit complement(2998373..2998981) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254375 NP_461774.1 CDS hycA NC_003197.1 2999127 2999588 R regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; formate hydrogenlyase regulatory protein HycA complement(2999127..2999588) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254376 NP_461775.1 CDS hypA NC_003197.1 2999798 3000154 D plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein 2999798..3000154 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254377 NP_461776.1 CDS hypB NC_003197.1 3000223 3001095 D GTP hydrolase involved in nickel liganding into hydrogenases; hydrogenase nickel incorporation protein HypB 3000223..3001095 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254378 NP_461777.1 CDS hypC NC_003197.1 3001086 3001358 D HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase; hydrogenase assembly chaperone 3001086..3001358 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254379 NP_461778.1 CDS hypD NC_003197.1 3001358 3002476 D hydrogenase expression/formation protein 3001358..3002476 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254380 NP_461779.2 CDS hypE NC_003197.1 3002473 3003483 D hydrogenase expression/formation protein 3002473..3003483 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254381 NP_461780.1 CDS fhlA NC_003197.1 3003702 3005780 D formate hydrogenlyase transcriptional activator for fdhF, hyc and hyp operons EBP family (SW:FHLA_SALTY); formate hydrogen-lyase transcriptional activator 3003702..3005780 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254382 NP_461781.1 CDS ygbA NC_003197.1 3005842 3006186 R cytoplasmic protein complement(3005842..3006186) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254383 NP_461782.1 CDS sitA NC_003197.1 3006368 3007285 D SitA; Salmonella iron transporter; Fur-regulated; Fur regulated iron ABC transporter substrate-binding protein SitA 3006368..3007285 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254384 NP_461783.1 CDS sitB NC_003197.1 3007282 3008103 D SitB; Salmonella iron transporter; Fur-regulated; Fur regulated iron ABC transporter ATP-binding protein SitB 3007282..3008103 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254385 NP_461784.1 CDS sitC NC_003197.1 3008100 3008960 D SitC; Salmonella iron transporter; Fur-regulated; Fur regulated iron ABC transporter permease SitC 3008100..3008960 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254386 NP_461785.1 CDS sitD NC_003197.1 3008951 3009799 D SitD; Salmonella iron transporter; Fur-regulated; Fur regulated iron ABC transporter permease SitD 3008951..3009799 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254387 NP_461786.1 CDS avrA NC_003197.1 3009898 3010806 R invasion protein; inhbits activation of key proinflammatory transcription factor NF-kappaB; secreted effector protein complement(3009898..3010806) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254388 NP_461787.1 CDS sprB NC_003197.1 3010967 3011722 R transcriptional regulator SprB; transcriptional regulator complement(3010967..3011722) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254389 NP_461788.1 CDS sirC NC_003197.1 3012107 3012994 R SprA; HilC; helix-turn-helix protein; AraC family; activator for invasion genes; derepresses hilA expression; transcriptional regulator SirC complement(3012107..3012994) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254390 NP_461789.1 CDS orgC NC_003197.1 3013339 3013791 R cytoplasmic protein complement(3013339..3013791) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254391 NP_461790.1 CDS orgB NC_003197.1 3013788 3014468 R oxygen-regulated invasion protein OrgB (SW:ORGB_SALTY); flagellar biosynthesis/type III secretion apparatus; oxygen-regulated invasion protein OrgB complement(3013788..3014468) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254392 NP_461791.1 CDS orgA NC_003197.1 3014425 3015024 R oxygen-regulated invasion protein OrgA (SW:ORGA_SALTY); flagellar biosynthesis/type III secretion apparatus; oxygen-regulated invasion protein OrgA complement(3014425..3015024) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254393 NP_461792.1 CDS prgK NC_003197.1 3014996 3015754 R needle complex inner membrane lipoprotein; cell invasion protein; interacts with PrgH and forms oligomeric rings; type III secretion apparatus; secretion system lipoprotein PrgK complement(3014996..3015754) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254394 NP_461793.1 CDS prgJ NC_003197.1 3015751 3016056 R needle complex minor subunit; invasion protein; may cap needle complex; type III secretion apparatus; secretion system protein PrgJ complement(3015751..3016056) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254395 NP_461794.1 CDS prgI NC_003197.1 3016075 3016317 R needle complex major subunit; invasion protein; type III secretion apparatus; secretion system protein PrgI complement(3016075..3016317) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254396 NP_461795.1 CDS prgH NC_003197.1 3016342 3017520 R needle complex inner membrane protein; invasion protein; interacts with PrgK; tetarmerizes; with PrgK forms multimeric ring-shaped structures; type III secretion apparatus; secretion system protein PrgH complement(3016342..3017520) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254397 NP_461796.1 CDS hilD NC_003197.1 3017836 3018765 D HilD; helix-turn-helix proteins; AraC family; activator for invasion genes; derepresses hilA expression; transcriptional regulator HilD 3017836..3018765 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254398 NP_461797.1 CDS hilA NC_003197.1 3019856 3021517 D Activates the expression of invasion genes and activates the expression of prgHIJK which is part of the pathogenicity island 1 type III secretion system; transcriptional regulator HilA 3019856..3021517 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254399 NP_461798.1 CDS iagB NC_003197.1 3021535 3022017 D invasion associated gene protein IagB (SW:IAGB_SALTY); invasion protein IagB 3021535..3022017 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254400 NP_461799.1 CDS sptP NC_003197.1 3022071 3023702 R protein tyrosine phosphatase/GTPase activating protein; translocated protein; type III secretion; antagonizes bacterial-encoded exchange factors SopE and SopE2 by interfering with stimulation of Cdc42 and Rac1; binds Rac1; secreted effector protein SptP complement(3022071..3023702) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254401 NP_461800.1 CDS sicP NC_003197.1 3023689 3024081 R SicP; virulence protein; chaperone for SptP; type III secretion; chaperone protein SicP complement(3023689..3024081) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254402 YP_006892404.1 CDS STM05625 NC_003197.1 3024108 3024332 R hypothetical protein complement(3024108..3024332) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865715 NP_461802.1 CDS iacP NC_003197.1 3024412 3024660 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein IacP complement(3024412..3024660) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254404 NP_461803.1 CDS sipA NC_003197.1 3024679 3026736 R Salmonella invasion protein SipA; binds actin and promotes polymerization; results in membrane ruffling and internalization due to cytoskeleton rearrangements; cell invasion protein SipA complement(3024679..3026736) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254405 NP_461804.1 CDS sipD NC_003197.1 3026755 3027786 R cell invasion protein SspD protein; involved in translocating secreted proteins to host cells; translocon; type III secretion; cell invasion protein SipD complement(3026755..3027786) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254406 NP_461805.1 CDS sipC NC_003197.1 3027857 3029086 R cell invasion protein SspC; involved in translocating secreted proteins to host cell; translocon; type III secretion; inserted into host cell plasma membrane; interacts with SipC; cell invasion protein SipC complement(3027857..3029086) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254407 NP_461806.1 CDS sipB NC_003197.1 3029114 3030895 R cell invasion protein SspB, SipB; involved in translocating secreted proteins to host cell; translocon; type III secretion; inserted into host cell plasma membrane; interacts with SipC; cell invasion protein SipB complement(3029114..3030895) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254408 NP_461807.1 CDS sicA NC_003197.1 3030898 3031395 R surface presentation of antigens protein SpaT (SW:SPAT_SALTY); surface presentation of antigens; secretory proteins; partitioning factor for SipB/C; prevents premature association of SipB/C; regulates several promoters with InvF; chaperone protein SicA complement(3030898..3031395) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254409 NP_461808.1 CDS spaS NC_003197.1 3031533 3032603 R Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins; surface presentation of antigens protein SpaS complement(3031533..3032603) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254410 NP_461809.1 CDS spaR NC_003197.1 3032590 3033381 R needle complex export protein; inner membrane secretory protein; type III secretion apparatus; surface presentation of antigens protein SpaR complement(3032590..3033381) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254411 NP_461810.1 CDS spaQ NC_003197.1 3033385 3033645 R surface presentation of antigens protein SpaQ (SW:SPAQ_SALTY); inner membrane secretory protein; type III secretion apparatus; surface presentation of antigens protein SpaQ complement(3033385..3033645) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254412 NP_461811.1 CDS spaP NC_003197.1 3033671 3034345 R part of a type III secretory system probably involved in invasion into eukaryotic cells; surface presentation of antigens protein SpaP complement(3033671..3034345) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254413 NP_461812.1 CDS spaO NC_003197.1 3034335 3035246 R involved in a secretory pathway responsible for the surface presentation of determinants needed for the entry of Salmonella species into mammalian cells; surface presentation of antigens protein SpaO complement(3034335..3035246) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254414 NP_461813.1 CDS spaN NC_003197.1 3035246 3036256 R surface presentation of antigens protein SpaN (SW:SPAN_SALTY); surface presentation of antigens; secretory proteins; surface presentation of antigens protein SpaN complement(3035246..3036256) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254415 NP_461814.1 CDS invI NC_003197.1 3036256 3036699 R surface presentation of antigens protein SpaM (SW:SPAM_SALTY); secretory proteins; type III secretion apparatus; surface presentation of antigens protein SpaM complement(3036256..3036699) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254416 NP_461815.1 CDS invC NC_003197.1 3036677 3037972 R Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase; ATP synthase SpaL complement(3036677..3037972) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254417 NP_461816.1 CDS invB NC_003197.1 3037969 3038376 R surface presentation of antigens protein SpaK (SW:SPAK_SALTY); secretory protein; chaperone for SopE/SopE2; type III secretion; surface presentation of antigens protein SpaK complement(3037969..3038376) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254418 NP_461817.1 CDS invA NC_003197.1 3038400 3040457 R needle complex export protein; inner membrane protein; type III secretion apparatus; invasion protein InvA complement(3038400..3040457) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254419 NP_461818.1 CDS invE NC_003197.1 3040482 3041600 R invasion protein InvE (SW:INVE_SALTY); interacts with SecA-SipB/C complex; essential for translocation into host cells; invasion protein InvE complement(3040482..3041600) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254420 NP_461819.1 CDS invG NC_003197.1 3041597 3043285 R InvG protein (SW:INVG_SALTY); forms ring-shaped structure in outer membrane; requires InvH for stability; type III secretion apparatus; invasion protein InvG complement(3041597..3043285) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254421 NP_461820.1 CDS invF NC_003197.1 3043282 3043932 R invasion protein InvF (SW:INVF_SALTY); SPI-1 transcription factor; activated by HilA; requires SicA as a co-factor; controls sigD/sopB, sopE and sicAsipBCDA genes; transcriptional regulator InvF complement(3043282..3043932) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254422 NP_461821.1 CDS invH NC_003197.1 3044389 3044832 D needle complex outer membrane lipoprotein; stabilizes InvG secretin; type III secretion apparatus; invasion lipoprotein InvH 3044389..3044832 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254423 NP_461822.1 CDS STM2901 NC_003197.1 3045263 3045712 D cytoplasmic protein 3045263..3045712 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254424 NP_461823.1 CDS STM2902 NC_003197.1 3045697 3046044 D cytoplasmic protein 3045697..3046044 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254425 NP_461824.1 CDS STM2903 NC_003197.1 3046317 3046643 R cytoplasmic protein complement(3046317..3046643) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254426 NP_461825.1 CDS STM2904 NC_003197.1 3047332 3047622 D hypothetical protein 3047332..3047622 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254427 NP_461826.1 CDS STM2905 NC_003197.1 3047619 3048146 D acetyltransferase 3047619..3048146 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254428 NP_461828.1 CDS pphB NC_003197.1 3048771 3049427 D serine/threonine-protein phosphatase 3048771..3049427 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254430 NP_461829.1 CDS STM2908 NC_003197.1 3049599 3050120 R cytoplasmic protein complement(3049599..3050120) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254431 NP_461830.1 CDS mutS NC_003197.1 3050279 3052846 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 3050279..3052846 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254432 NP_461831.1 CDS STM2910 NC_003197.1 3052902 3053282 R cytoplasmic protein complement(3052902..3053282) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254433 NP_461832.1 CDS STM2911 NC_003197.1 3053279 3054487 R permease complement(3053279..3054487) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254434 NP_461833.1 CDS STM2912 NC_003197.1 3054575 3055507 D LysR family transcriptional regulator 3054575..3055507 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254435 NP_461834.1 CDS STM2913 NC_003197.1 3055549 3057045 R permease complement(3055549..3057045) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254436 NP_461835.1 CDS STM2914 NC_003197.1 3057042 3057992 R nucleoside-diphosphate-sugar epimerase complement(3057042..3057992) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254437 NP_461836.1 CDS ygbM NC_003197.1 3058032 3058808 R hydroxypyruvate isomerase complement(3058032..3058808) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254438 NP_461837.1 CDS ygbL NC_003197.1 3058813 3059451 R fuculose phosphate aldolase complement(3058813..3059451) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254439 NP_461838.1 CDS ygbK NC_003197.1 3059448 3060710 R tRNA synthase complement(3059448..3060710) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254440 NP_461839.1 CDS ygbJ NC_003197.1 3060704 3061627 R 3-hydroxyisobutyrate dehydrogenase complement(3060704..3061627) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254441 NP_461840.1 CDS ygbI NC_003197.1 3061824 3062588 D DeoR family regulatory protein 3061824..3062588 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254442 NP_461841.1 CDS STM2920 NC_003197.1 3062607 3063011 R transcriptional regulator complement(3062607..3063011) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254443 NP_461842.1 CDS STM2921 NC_003197.1 3063182 3063775 D 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 3063182..3063775 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254444 NP_461843.1 CDS STM2922 NC_003197.1 3063775 3065202 D 3-polyprenyl-4-hydroxybenzoate decarboxylase 3063775..3065202 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254445 NP_461844.1 CDS STM2923 NC_003197.1 3065213 3065449 D cytoplasmic protein 3065213..3065449 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254446 NP_461845.1 CDS rpoS NC_003197.1 3065494 3066486 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS complement(3065494..3066486) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254447 NP_461846.1 CDS nlpD NC_003197.1 3066549 3067682 R Murein hydrolase activator NlpD complement(3066549..3067682) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254448 NP_461847.1 CDS pcm NC_003197.1 3067858 3068484 R catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase complement(3067858..3068484) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254449 NP_461848.1 CDS surE NC_003197.1 3068478 3069239 R stationary phase survival protein SurE; catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; 5'/3'-nucleotidase SurE complement(3068478..3069239) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254450 NP_461849.1 CDS truD NC_003197.1 3069220 3070269 R catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D complement(3069220..3070269) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254451 NP_461850.1 CDS ispF NC_003197.1 3070266 3070745 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(3070266..3070745) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254452 NP_461851.1 CDS ispD NC_003197.1 3070745 3071455 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(3070745..3071455) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254453 NP_461852.1 CDS ftsB NC_003197.1 3071474 3071785 R forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB complement(3071474..3071785) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254454 NP_461853.2 CDS ygbE NC_003197.1 3071976 3072299 R inner membrane protein complement(3071976..3072299) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254455 NP_461854.1 CDS cysC NC_003197.1 3072350 3072955 R converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenyly-lsulfate kinase complement(3072350..3072955) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254456 NP_461855.1 CDS cysN NC_003197.1 3072942 3074381 R may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 complement(3072942..3074381) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254457 NP_461856.1 CDS cysD NC_003197.1 3074391 3075299 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(3074391..3075299) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254458 NP_461857.1 CDS iap NC_003197.1 3075550 3076596 D catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; alkaline phosphatase isozyme conversion aminopeptidase 3075550..3076596 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254459 NP_461858.1 CDS ygbF NC_003197.1 3078244 3078540 R inner membrane protein complement(3078244..3078540) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254460 NP_461859.1 CDS STM2938 NC_003197.1 3078537 3079457 R CRISPR-associated endonuclease Cas1 complement(3078537..3079457) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254461 NP_461860.1 CDS ygcH NC_003197.1 3079454 3080104 R cytoplasmic protein complement(3079454..3080104) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254462 NP_461861.1 CDS STM2940 NC_003197.1 3080086 3080832 R cytoplasmic protein complement(3080086..3080832) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254463 NP_461862.1 CDS yghJ NC_003197.1 3080843 3081901 R cytoplasmic protein complement(3080843..3081901) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254464 NP_461863.1 CDS STM2942 NC_003197.1 3081915 3082475 R transposase complement(3081915..3082475) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254465 NP_461864.1 CDS STM2943 NC_003197.1 3082472 3084028 R cytoplasmic protein complement(3082472..3084028) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254466 NP_461865.1 CDS ygcB NC_003197.1 3084040 3086703 R helicase complement(3084040..3086703) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254467 NP_461866.1 CDS sopD NC_003197.1 3087148 3088101 D hypothetical 36.1 kDa protein in cysH 3'region (ORF4) (SW:YGCC_SALTY); secreted by SPI-1; type III secretion; secreted effector protein SopD 3087148..3088101 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254468 NP_461867.1 CDS cysH NC_003197.1 3088189 3088923 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(3088189..3088923) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254469 NP_461868.1 CDS cysI NC_003197.1 3088999 3090711 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase hemoprotein subunit beta complement(3088999..3090711) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254470 NP_461869.1 CDS cysJ NC_003197.1 3090711 3092510 R catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; sulfite reductase flavoprotein subunit alpha complement(3090711..3092510) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254471 NP_461870.1 CDS ptpS NC_003197.1 3092934 3093296 D 6-pyruvoyl tetrahydrobiopterin synthase 3092934..3093296 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254472 NP_461871.1 CDS STM2950 NC_003197.1 3093384 3094181 R beta-lactamase superfamily II; metal-dependent hydrolase complement(3093384..3094181) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254473 NP_461872.1 CDS ygcF NC_003197.1 3096557 3097228 R organic radical activating enzymes; 7-carboxy-7-deazaguanine synthase complement(3096557..3097228) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254474 NP_461873.1 CDS eno NC_003197.1 3097364 3098662 R phosphopyruvate hydratase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; enolase complement(3097364..3098662) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254475 NP_461874.1 CDS pyrG NC_003197.1 3098745 3100382 R CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(3098745..3100382) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254476 NP_461875.1 CDS mazG NC_003197.1 3100610 3101410 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase complement(3100610..3101410) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254477 NP_945168.1 CDS STM2954.1n NC_003197.1 3102178 3102468 R hypothetical protein complement(3102178..3102468) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673739 NP_461876.2 CDS STM2955.S NC_003197.1 3102440 3102715 R contains CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; transcriptional regulator complement(3102440..3102715) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254478 NP_461877.1 CDS relA NC_003197.1 3102880 3105114 R (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; (P)ppGpp synthetase I complement(3102880..3105114) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254479 NP_461878.1 CDS rumA NC_003197.1 3105166 3106461 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD complement(3105166..3106461) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254480 NP_461879.1 CDS barA NC_003197.1 3106519 3109275 D part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; sensory histidine kinase 3106519..3109275 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254481 NP_461880.1 CDS STM2959 NC_003197.1 3109319 3110461 R glycerate kinase complement(3109319..3110461) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254482 NP_461881.1 CDS gudD NC_003197.1 3110539 3111879 R d-glucarate dehydratase complement(3110539..3111879) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254483 NP_461882.1 CDS ygcY NC_003197.1 3111900 3113240 R D-glucarate dehydratase complement(3111900..3113240) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254484 NP_461883.1 CDS gudT NC_003197.1 3113237 3114595 R D-glucarate permease complement(3113237..3114595) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254485 NP_461884.1 CDS STM2963 NC_003197.1 3115076 3115525 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(3115076..3115525) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254486 NP_461885.1 CDS yqcB NC_003197.1 3115544 3116326 R catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C complement(3115544..3116326) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254487 NP_461886.1 CDS yqcC NC_003197.1 3116326 3116655 R cytoplasmic protein complement(3116326..3116655) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254488 NP_461887.1 CDS syd NC_003197.1 3117267 3117812 R SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd complement(3117267..3117812) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254490 NP_461888.1 CDS queF NC_003197.1 3117881 3118729 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3117881..3118729 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254491 NP_461889.1 CDS ygdH NC_003197.1 3118842 3120206 D nucleotide binding protein 3118842..3120206 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254492 NP_461890.1 CDS sdaC NC_003197.1 3120771 3122060 D HAAAP family serine transport protein 3120771..3122060 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254493 NP_461891.1 CDS sdaB NC_003197.1 3122119 3123486 D L-serine dehydratase 3122119..3123486 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254494 NP_461892.2 CDS xni NC_003197.1 3123657 3124412 D has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; Flap endonuclease Xni 3123657..3124412 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254495 NP_461893.1 CDS fucO NC_003197.1 3124504 3125652 R L-1,2-propanediol oxidoreductase complement(3124504..3125652) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254496 NP_461894.1 CDS fucA NC_003197.1 3125669 3126316 R catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose-1-phosphate aldolase complement(3125669..3126316) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254497 NP_461895.1 CDS fucI NC_003197.1 3128220 3129995 D catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 3128220..3129995 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254499 NP_461896.1 CDS fucK NC_003197.1 3130096 3131514 D L-fuculokinase 3130096..3131514 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254500 NP_461897.1 CDS fucU NC_003197.1 3131516 3131938 D L-fucose mutarotase 3131516..3131938 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254501 NP_461898.1 CDS fucR NC_003197.1 3131996 3132706 D regulates expression of genes involved in L-fucose utilization; DNA-binding transcriptional activator FucR 3131996..3132706 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254502 NP_461899.1 CDS ygdE NC_003197.1 3132765 3133865 R rRNA large subunit methyltransferase M complement(3132765..3133865) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254503 NP_461900.1 CDS ygdD NC_003197.1 3133858 3134253 R small membrane protein complement(3133858..3134253) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254504 NP_461901.1 CDS gcvA NC_003197.1 3134272 3135189 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(3134272..3135189) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254505 NP_461902.1 CDS ygdI NC_003197.1 3135536 3135763 R lipoprotein complement(3135536..3135763) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254506 NP_461903.1 CDS csdA NC_003197.1 3135956 3137161 D selenocysteine lyase 3135956..3137161 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254507 NP_461904.1 CDS sufE NC_003197.1 3137161 3137604 D FeS center assembly protein SufE 3137161..3137604 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254508 NP_461905.2 CDS STM2986.Sc NC_003197.1 3137877 3138791 D integral membrane protein 3137877..3138791 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254509 NP_461906.1 CDS STM2987 NC_003197.1 3138843 3139649 R hypothetical protein complement(3138843..3139649) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254510 NP_461907.1 CDS mltA NC_003197.1 3139759 3140856 R membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A complement(3139759..3140856) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254511 NP_461908.1 CDS amiC NC_003197.1 3141356 3142609 R N-acetylmuramoyl-L-alanine amidase complement(3141356..3142609) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254514 NP_461909.1 CDS argA NC_003197.1 3142842 3144173 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; amino-acid acetyltransferase 3142842..3144173 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254515 NP_461910.1 CDS recD NC_003197.1 3144276 3146111 R helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha complement(3144276..3146111) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254516 NP_461911.1 CDS recB NC_003197.1 3146108 3149653 R helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta complement(3146108..3149653) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254517 NP_461912.1 CDS ptr NC_003197.1 3149646 3152534 R protease III complement(3149646..3152534) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254518 NP_461913.1 CDS recC NC_003197.1 3152712 3156083 R catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma complement(3152712..3156083) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254519 NP_461914.1 CDS ppdC NC_003197.1 3156099 3156419 R prepilin peptidase dependent protein C complement(3156099..3156419) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254520 NP_461915.1 CDS ygdB NC_003197.1 3156404 3156811 R periplasmic protein complement(3156404..3156811) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254521 NP_461916.1 CDS ppdB NC_003197.1 3156808 3157371 R prepilin peptidase dependent protein B complement(3156808..3157371) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254522 NP_461917.1 CDS ppdA NC_003197.1 3157362 3157832 R prepilin peptidase dependent protein A complement(3157362..3157832) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254523 NP_461918.1 CDS thyA NC_003197.1 3158017 3158811 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(3158017..3158811) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254524 NP_461919.1 CDS lgt NC_003197.1 3158818 3159693 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(3158818..3159693) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254525 NP_461920.1 CDS ptsP NC_003197.1 3159909 3162155 R member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain complement(3159909..3162155) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254526 NP_461921.1 CDS ygdP NC_003197.1 3162168 3162698 R hydrolyzes diadenosine polyphosphate; RNA pyrophosphohydrolase complement(3162168..3162698) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254527 NP_951054.1 CDS STM3004.1n NC_003197.1 3163049 3163195 R hypothetical protein complement(3163049..3163195) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673726 NP_461922.1 CDS mutH NC_003197.1 3163381 3164076 D MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein MutH 3163381..3164076 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254528 NP_461923.1 CDS ygdQ NC_003197.1 3164258 3164971 D integral membrane transport protein 3164258..3164971 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254529 NP_461924.1 CDS ygdR NC_003197.1 3165141 3165359 D POT family; POT family peptide transport protein 3165141..3165359 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254530 NP_461925.1 CDS tas NC_003197.1 3165550 3166590 D complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; aldo-keto reductase 3165550..3166590 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254531 NP_461926.1 CDS ygeD NC_003197.1 3166677 3167879 R lysophospholipid transporter LplT complement(3166677..3167879) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254532 NP_461927.1 CDS aas NC_003197.1 3167872 3170031 R Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase complement(3167872..3170031) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254533 NP_461928.1 CDS galR NC_003197.1 3170624 3171652 D controls transcription of galETKM; HTH-type transcriptional regulator GalR 3170624..3171652 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254534 NP_461929.1 CDS STM3012 NC_003197.1 3171663 3172685 D transcriptional regulator 3171663..3172685 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254535 NP_461930.1 CDS lysA NC_003197.1 3172695 3173957 R catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase complement(3172695..3173957) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254536 NP_461931.1 CDS lysR NC_003197.1 3174075 3175010 D activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; LysR family transcriptional regulator 3174075..3175010 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254537 NP_461932.1 CDS ygeA NC_003197.1 3174982 3175689 R racemase complement(3174982..3175689) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254538 NP_461933.1 CDS araE NC_003197.1 3175802 3177220 R L-arabinose/proton symport protein complement(3175802..3177220) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254539 NP_461934.1 CDS kduD NC_003197.1 3177574 3178335 R catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase complement(3177574..3178335) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254540 NP_461935.1 CDS kduI NC_003197.1 3178392 3179228 R 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase complement(3178392..3179228) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254541 NP_461936.1 CDS yqeF NC_003197.1 3179658 3180836 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase complement(3179658..3180836) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254542 NP_461937.1 CDS STM3020 NC_003197.1 3180959 3181822 R LysR family transcriptional regulator complement(3180959..3181822) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254543 NP_461938.1 CDS STM3021 NC_003197.1 3181899 3182381 D inner membrane protein 3181899..3182381 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254544 NP_461939.1 CDS STM3022 NC_003197.1 3182523 3183752 D transporter 3182523..3183752 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254545 NP_461940.1 CDS yohL NC_003197.1 3183783 3184055 R transcriptional repressor RcnR complement(3183783..3184055) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254546 NP_461941.1 CDS yohM NC_003197.1 3184177 3185043 D membrane protein conferring nickel and cobalt resistance; nickel/cobalt efflux protein RcnA 3184177..3185043 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254547 NP_461942.1 CDS STM3025 NC_003197.1 3185253 3186011 R cytoplasmic protein complement(3185253..3186011) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254548 NP_945169.1 CDS STM3025.1N NC_003197.1 3185998 3186510 R hypothetical protein complement(3185998..3186510) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673750 NP_461943.1 CDS STM3026 NC_003197.1 3186654 3187730 R outer membrane protein complement(3186654..3187730) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254549 NP_461944.1 CDS stdC NC_003197.1 3187727 3188470 R fimbrial chaperone complement(3187727..3188470) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254550 NP_461945.1 CDS stdB NC_003197.1 3188511 3191000 R outer membrane usher protein complement(3188511..3191000) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254551 NP_461946.2 CDS stdA NC_003197.1 3191120 3191680 R fimbrial-like protein complement(3191120..3191680) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254552 NP_461947.1 CDS STM3030 NC_003197.1 3192423 3193055 R periplasmic protein complement(3192423..3193055) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254553 NP_461948.1 CDS STM3031 NC_003197.1 3193102 3193638 R Ail/OmpX-like protein complement(3193102..3193638) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254554 NP_461949.1 CDS tnpA_4 NC_003197.1 3194318 3194776 R transposase for insertion sequence element IS200 (SW:T200_SALTY); insertion sequence element IS200 transposase complement(3194318..3194776) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254555 NP_461950.1 CDS STM3033 NC_003197.1 3195156 3195554 R toxin VapC; stability determinant protein; tRNA(fMet)-specific endonuclease VapC complement(3195156..3195554) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254556 NP_461951.1 CDS STM3034 NC_003197.1 3195554 3195781 R antitoxin VapB complement(3195554..3195781) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254557 NP_461953.1 CDS STM3036 NC_003197.1 3196484 3197290 D inner membrane protein 3196484..3197290 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254559 NP_461954.1 CDS STM3038 NC_003197.1 3197575 3198333 R metalloendopeptidase complement(3197575..3198333) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254561 NP_461955.1 CDS idi NC_003197.1 3198598 3199143 D catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; isopentenyl-diphosphate delta-isomerase 3198598..3199143 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254562 NP_461956.1 CDS lysS NC_003197.1 3199219 3200736 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysine--tRNA ligase complement(3199219..3200736) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254563 NP_461957.2 CDS prfB NC_003197.1 3200746 3201822 R peptide chain release factor 2; RF-2 (SW:RF2_SALTY); peptide chain release factor 2 complement(3200746..3201822) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254564 NP_461958.1 CDS recJ NC_003197.1 3201949 3203682 R 5'-3' single-stranded-DNA-specific exonuclease; ssDNA-specific exonuclease RecJ complement(3201949..3203682) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254565 NP_461959.1 CDS dsbC NC_003197.1 3203688 3204401 R DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; thiol:disulfide interchange protein DsbC complement(3203688..3204401) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254566 NP_461960.1 CDS xerD NC_003197.1 3204425 3205321 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; tyrosine recombinase XerD complement(3204425..3205321) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254567 NP_461961.1 CDS fldB NC_003197.1 3205434 3205955 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin 3205434..3205955 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254568 NP_461962.1 CDS ygfX NC_003197.1 3206008 3206421 R inner membrane protein complement(3206008..3206421) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254569 NP_461963.1 CDS ygfY NC_003197.1 3206402 3206668 R antitoxin YgfY complement(3206402..3206668) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254570 YP_006892405.1 CDS STM05645 NC_003197.1 3206667 3206903 D hypothetical protein 3206667..3206903 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865700 NP_461964.1 CDS ygfZ NC_003197.1 3206918 3207898 D physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator; tRNA-modifying protein 3206918..3207898 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254571 NP_461965.1 CDS yqfA NC_003197.1 3208014 3208673 R hemolysin complement(3208014..3208673) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254572 NP_461966.1 CDS STM3050 NC_003197.1 3208837 3209148 R hypothetical protein complement(3208837..3209148) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254573 NP_461967.1 CDS bglA NC_003197.1 3209307 3210740 D 6-phospho-beta-glucosidase 3209307..3210740 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254574 NP_461968.1 CDS STM3052 NC_003197.1 3210788 3211681 R outer membrane protein complement(3210788..3211681) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254575 NP_461969.1 CDS gcvP NC_003197.1 3212137 3215010 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(3212137..3215010) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254576 NP_461970.1 CDS gcvH NC_003197.1 3215173 3215562 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(3215173..3215562) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254577 NP_461971.1 CDS gcvT NC_003197.1 3215588 3216682 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(3215588..3216682) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254578 NP_461972.1 CDS visC NC_003197.1 3217137 3218339 R monooxygenase complement(3217137..3218339) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254579 NP_461973.1 CDS ubiH NC_003197.1 3218465 3219643 R Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3218465..3219643) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254580 NP_461974.1 CDS pepP NC_003197.1 3219640 3220956 R exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; proline aminopeptidase P II complement(3219640..3220956) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254581 NP_461975.2 CDS STM3059.S NC_003197.1 3220982 3221560 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein complement(3220982..3221560) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254582 NP_461976.1 CDS ygfE NC_003197.1 3221727 3222056 D Z-ring-associated protein 3221727..3222056 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254583 NP_461977.1 CDS ygfA NC_003197.1 3222350 3222898 D ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; ligase 3222350..3222898 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254584 NP_461978.1 CDS serA NC_003197.1 3223279 3224511 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(3223279..3224511) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254585 NP_461979.1 CDS rpiA NC_003197.1 3224777 3225436 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(3224777..3225436) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254586 NP_461980.1 CDS iciA NC_003197.1 3225590 3226483 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3225590..3226483 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254587 NP_461981.1 CDS yggE NC_003197.1 3226749 3227495 R oxidative stress defense protein complement(3226749..3227495) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254588 NP_461982.1 CDS argO NC_003197.1 3227589 3228224 R Involved in the export of arginine; arginine exporter protein ArgO complement(3227589..3228224) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254589 NP_461983.1 CDS yggB NC_003197.1 3228424 3229284 R participates in the regulation of osmotic pressure changes within the cel; mechanosensitive channel complement(3228424..3229284) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254590 NP_461984.1 CDS fba NC_003197.1 3229511 3230590 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase complement(3229511..3230590) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254591 NP_461985.1 CDS pgk NC_003197.1 3230692 3231855 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(3230692..3231855) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254592 NP_461986.1 CDS epd NC_003197.1 3231877 3232923 R NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase complement(3231877..3232923) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254593 NP_461987.1 CDS STM3071 NC_003197.1 3233297 3233722 D DNA-binding protein 3233297..3233722 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254594 NP_461988.1 CDS STM3072 NC_003197.1 3233748 3234326 D inner membrane protein 3233748..3234326 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254595 NP_461989.1 CDS STM3073 NC_003197.1 3234327 3235034 D CbiQ and related transporter; cobalt ABC transporter permease 3234327..3235034 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254596 NP_461990.1 CDS STM3074 NC_003197.1 3235022 3235699 D cobalt ABC transporter ATP-binding protein 3235022..3235699 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254597 NP_461991.1 CDS STM3075 NC_003197.1 3235693 3236349 D cobalt ABC transporter ATP-binding protein 3235693..3236349 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254598 NP_461992.1 CDS tktA NC_003197.1 3236393 3238384 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(3236393..3238384) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254599 NP_461993.1 CDS yggG NC_003197.1 3238660 3239418 D contains chaperone function; Zn-dependent protease 3238660..3239418 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254600 NP_461994.1 CDS speB NC_003197.1 3239519 3240439 R catalyzes the formation of putrescine from agmatine; agmatinase complement(3239519..3240439) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254601 NP_461995.2 CDS STM3079.S NC_003197.1 3240644 3241459 R hydrolase/acyltransferase complement(3240644..3241459) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254602 NP_461996.1 CDS STM3080 NC_003197.1 3241814 3242287 R mannitol dehydrogenase complement(3241814..3242287) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254603 NP_461997.1 CDS STM3081 NC_003197.1 3242326 3243333 R malate/L-lactate dehydrogenase complement(3242326..3243333) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254604 NP_461998.1 CDS STM3082 NC_003197.1 3243347 3244363 R zinc-binding dehydrogenase complement(3243347..3244363) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254605 NP_461999.1 CDS STM3083 NC_003197.1 3244366 3245838 R mannitol dehydrogenase complement(3244366..3245838) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254606 NP_462000.2 CDS STM3084.S NC_003197.1 3247098 3247847 R regulatory protein complement(3247098..3247847) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254607 NP_462001.1 CDS STM3085 NC_003197.1 3248052 3248783 R outer membrane lipoprotein complement(3248052..3248783) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254608 NP_462002.1 CDS speA NC_003197.1 3248927 3250903 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(3248927..3250903) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254609 NP_462003.1 CDS yqgB NC_003197.1 3250912 3251043 R inner membrane protein complement(3250912..3251043) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254610 NP_462005.1 CDS yqgD NC_003197.1 3251338 3251637 R inner membrane protein complement(3251338..3251637) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254612 NP_462006.1 CDS metK NC_003197.1 3251693 3252847 D methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3251693..3252847 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254613 NP_462007.1 CDS galP NC_003197.1 3253339 3254733 D galactose/proton symporter 3253339..3254733 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254614 NP_462008.1 CDS sprT NC_003197.1 3254812 3255309 D SprT family metalloprotease 3254812..3255309 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254615 NP_462009.1 CDS endA NC_003197.1 3255404 3256111 D DNA-specific endonuclease I 3255404..3256111 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254616 NP_462010.2 CDS yggJ NC_003197.1 3256188 3256919 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 3256188..3256919 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254617 NP_462011.1 CDS gshB NC_003197.1 3256939 3257886 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3256939..3257886 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254618 NP_462012.1 CDS STM3096 NC_003197.1 3258102 3258665 D hypothetical protein 3258102..3258665 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254619 NP_462013.1 CDS yqgF NC_003197.1 3258665 3259081 D Holliday junction resolvase 3258665..3259081 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254620 NP_462014.1 CDS STM3098 NC_003197.1 3259128 3259814 R transcriptional regulator complement(3259128..3259814) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254621 NP_462015.1 CDS yggR NC_003197.1 3259946 3260926 R twitching motility protein complement(3259946..3260926) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254622 NP_462016.1 CDS STM3100 NC_003197.1 3260944 3261648 D enzyme with a TIM-barrel fold; hypothetical protein 3260944..3261648 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254623 NP_462017.1 CDS yggT NC_003197.1 3261667 3262233 D integral membrane protein 3261667..3262233 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254624 NP_462018.1 CDS STM3102 NC_003197.1 3262230 3262520 D hypothetical protein 3262230..3262520 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254625 NP_462019.1 CDS yggV NC_003197.1 3262528 3263121 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; dITP/XTP pyrophosphatase 3262528..3263121 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254626 NP_462020.1 CDS yggW NC_003197.1 3263114 3264250 D oxidoreductase 3263114..3264250 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254627 NP_462021.1 CDS yggM NC_003197.1 3264341 3265348 R periplasmic protein complement(3264341..3265348) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254628 NP_462022.1 CDS ansB NC_003197.1 3265481 3266527 R catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; L-asparaginase II complement(3265481..3266527) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254629 NP_462023.1 CDS yggN NC_003197.1 3266716 3267435 R periplasmic protein complement(3266716..3267435) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254630 NP_462024.1 CDS yggL NC_003197.1 3267485 3267811 R cytoplasmic protein complement(3267485..3267811) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254631 NP_462025.1 CDS trmB NC_003197.1 3267811 3268530 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(3267811..3268530) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254632 NP_462026.1 CDS mutY NC_003197.1 3268685 3269737 D A/G-specific adenine glycosylase 3268685..3269737 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254633 NP_462027.1 CDS yggX NC_003197.1 3269765 3270040 D Fe(2+)-trafficking protein 3269765..3270040 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254634 NP_462028.1 CDS mltC NC_003197.1 3270153 3271238 D Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; lytic murein transglycosylase C 3270153..3271238 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254635 NP_462029.1 CDS nupG NC_003197.1 3271455 3272711 D nucleoside transport 3271455..3272711 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254636 NP_462030.1 CDS speC NC_003197.1 3272773 3274908 R ornithine decarboxylase complement(3272773..3274908) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254637 NP_462031.1 CDS yqgA NC_003197.1 3275333 3276040 D inner membrane protein 3275333..3276040 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254638 NP_462032.1 CDS STM3117 NC_003197.1 3276380 3276814 R macrophage colonization factor complement(3276380..3276814) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254640 NP_462033.1 CDS STM3118 NC_003197.1 3276825 3278150 R acetyl-CoA hydrolase complement(3276825..3278150) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254641 NP_462034.1 CDS STM3119 NC_003197.1 3278175 3278702 R monoamine oxidase complement(3278175..3278702) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254642 NP_462035.1 CDS STM3120 NC_003197.1 3278726 3279568 R citrate lyase subunit beta complement(3278726..3279568) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254643 NP_462036.1 CDS STM3121 NC_003197.1 3279660 3280538 D transcriptional regulator; LysR family; LysR family transcriptional regulator 3279660..3280538 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254644 NP_462037.1 CDS STM3122 NC_003197.1 3280586 3282325 R arylsulfatase complement(3280586..3282325) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254645 NP_462038.1 CDS STM3123 NC_003197.1 3282394 3283578 R arylsulfatase regulator complement(3282394..3283578) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254646 NP_462039.1 CDS STM3124 NC_003197.1 3284090 3284773 D response regulator 3284090..3284773 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254647 NP_462040.1 CDS STM3125 NC_003197.1 3284877 3285434 R cytoplasmic protein complement(3284877..3285434) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254648 NP_462041.1 CDS STM3126 NC_003197.1 3285412 3286911 R amino acid transporter complement(3285412..3286911) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254649 NP_462042.1 CDS STM3127 NC_003197.1 3287120 3287494 R cytoplasmic protein complement(3287120..3287494) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254650 NP_462043.1 CDS STM3128 NC_003197.1 3287509 3288810 R oxidoreductase complement(3287509..3288810) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254651 NP_462044.1 CDS STM3129 NC_003197.1 3288972 3290456 D NAD-dependent aldehyde dehydrogenase 3288972..3290456 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254652 NP_462045.1 CDS iraD NC_003197.1 3290592 3290972 R inhibitor of RssB activity in response to DNA damage; blocks degradation of stationary phase sigma factor RpoS; anti-adapter protein IraD complement(3290592..3290972) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254653 NP_462046.1 CDS STM3131 NC_003197.1 3290972 3291457 R cytoplasmic protein complement(3290972..3291457) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254654 NP_462047.1 CDS STM3132 NC_003197.1 3292183 3293106 R xylanase/chitin deacetylase complement(3292183..3293106) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254655 NP_462048.1 CDS STM3133 NC_003197.1 3293145 3294023 R amidohydrolase complement(3293145..3294023) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254656 NP_462049.1 CDS STM3134 NC_003197.1 3294419 3295723 R permease complement(3294419..3295723) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254657 NP_462050.1 CDS STM3135 NC_003197.1 3296128 3297312 D catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 3296128..3297312 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254658 NP_462051.1 CDS STM3136 NC_003197.1 3297423 3298895 D D-mannonate oxidoreductase 3297423..3298895 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254659 NP_462052.1 CDS STM3137 NC_003197.1 3298907 3300319 D catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; uronate isomerase 3298907..3300319 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254660 NP_462053.1 CDS STM3138 NC_003197.1 3300619 3301677 R methyl-accepting chemotaxis protein complement(3300619..3301677) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254661 NP_462054.1 CDS gsp NC_003197.1 3302347 3304203 R catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase complement(3302347..3304203) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254662 NP_462055.1 CDS yghU NC_003197.1 3304430 3305296 D YghU; B2989; one of eight glutathione transferase proteins from E. coli; glutathione S-transferase 3304430..3305296 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254663 NP_462056.1 CDS STM3141 NC_003197.1 3305364 3306074 R molybdate ABC transporter substrate-binding protein complement(3305364..3306074) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254664 NP_462057.1 CDS STM3142 NC_003197.1 3306074 3307126 R periplasmic ferrichrome-binding protein complement(3306074..3307126) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254665 NP_462058.1 CDS hybG NC_003197.1 3307202 3307450 R hydrogenase 2 accessory protein HypG complement(3307202..3307450) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254666 NP_462059.1 CDS hybF NC_003197.1 3307478 3307819 R plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein HybF complement(3307478..3307819) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254667 NP_462060.1 CDS hybE NC_003197.1 3307812 3308300 R hydrogenase 2-specific chaperone complement(3307812..3308300) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254668 NP_462061.1 CDS hybD NC_003197.1 3308293 3308787 R protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); hydrogenase 2 maturation endopeptidase complement(3308293..3308787) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254669 NP_462062.1 CDS hybC NC_003197.1 3308787 3310490 R involved in hydrogen uptake; hydrogenase 2 large subunit complement(3308787..3310490) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254670 NP_462063.1 CDS hybB NC_003197.1 3310487 3311665 R HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits; hydrogenase 2 b cytochrome subunit complement(3310487..3311665) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254671 NP_462064.1 CDS hybA NC_003197.1 3311655 3312641 R Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 4Fe-4S ferredoxin-type subunit complement(3311655..3312641) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254672 NP_462065.1 CDS hypO NC_003197.1 3312644 3313762 R involved in hydrogen uptake; hydrogenase 2 small subunit complement(3312644..3313762) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254673 NP_462066.1 CDS yghW NC_003197.1 3313952 3314239 R cytoplasmic protein complement(3313952..3314239) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254674 NP_462067.1 CDS STM3152 NC_003197.1 3314324 3315967 R methyl-accepting chemotaxis protein complement(3314324..3315967) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254675 NP_462068.1 CDS STM3153 NC_003197.1 3316274 3316768 R hypothetical protein complement(3316274..3316768) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254676 NP_462069.1 CDS STM3154 NC_003197.1 3317048 3317563 R ATP-dependent RNA helicase-like protein complement(3317048..3317563) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254677 NP_462070.1 CDS STM3155 NC_003197.1 3317655 3318065 D cytoplasmic protein 3317655..3318065 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254678 NP_462071.1 CDS STM3156 NC_003197.1 3318052 3318456 D cytoplasmic protein 3318052..3318456 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254679 NP_462072.1 CDS yghA NC_003197.1 3318580 3319464 D oxidoreductase 3318580..3319464 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254680 NP_462073.1 CDS exbD NC_003197.1 3319577 3320002 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD complement(3319577..3320002) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254681 NP_462074.1 CDS exbB NC_003197.1 3320009 3320743 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbB complement(3320009..3320743) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254682 NP_462075.1 CDS STM3160 NC_003197.1 3320736 3320885 R inner membrane protein complement(3320736..3320885) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254683 NP_462076.1 CDS metC NC_003197.1 3320995 3322182 D catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 3320995..3322182 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254684 NP_462077.1 CDS yghB NC_003197.1 3322322 3322981 D inner membrane protein 3322322..3322981 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254685 NP_462078.1 CDS yqhC NC_003197.1 3323045 3323962 R AraC/XylS family transcriptional regulator complement(3323045..3323962) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254686 NP_462079.1 CDS yqhD NC_003197.1 3324137 3325300 D similar to Escherichia coli oxidoreductase (AAC76047.1); alcohol dehydrogenase 3324137..3325300 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254687 NP_462080.1 CDS dkgA NC_003197.1 3325406 3326233 D methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; 2,5-diketo-D-gluconate reductase A 3325406..3326233 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254688 NP_462081.2 CDS STM3166.S NC_003197.1 3326420 3327883 D cation transporter 3326420..3327883 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254689 NP_462082.1 CDS STM3167 NC_003197.1 3327928 3328383 D Ap4A; diadenosine tetraphosphate hydrolase 3327928..3328383 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254690 YP_006892406.1 CDS STM05675 NC_003197.1 3328541 3328735 R hypothetical protein complement(3328541..3328735) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865710 NP_462083.1 CDS STM3168 NC_003197.1 3328938 3331109 R FeS oxidoreductase family 2; hypothetical protein complement(3328938..3331109) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254691 NP_462084.1 CDS STM3169 NC_003197.1 3331597 3332580 D periplasmic dicarboxylate-binding protein 3331597..3332580 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254692 NP_462085.1 CDS STM3170 NC_003197.1 3332622 3333104 D inner membrane protein 3332622..3333104 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254693 NP_462086.1 CDS ygiK NC_003197.1 3333115 3334422 D transporter 3333115..3334422 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254694 NP_462087.1 CDS ftsP NC_003197.1 3334467 3335879 R SufI protein (SW:SUFI_SALTY); periplasmic protein; cell division protein FtsP complement(3334467..3335879) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254695 NP_462088.1 CDS plsC NC_003197.1 3335953 3336690 R 1-acyl-SN-glycerol-3-phosphate acyltransferase (SW:PLSC_SALTY); 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(3335953..3336690) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254696 NP_462089.1 CDS parC NC_003197.1 3336947 3339205 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(3336947..3339205) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254697 NP_462090.1 CDS STM3175 NC_003197.1 3339316 3340182 R AraC family; helix-turn-helix; regulatory protein complement(3339316..3340182) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254698 NP_462091.1 CDS ygiW NC_003197.1 3340254 3340646 R outer membrane protein complement(3340254..3340646) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254699 NP_462092.1 CDS ygiX NC_003197.1 3340798 3341457 D response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; transcriptional regulator QseB 3340798..3341457 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254700 NP_462093.1 CDS ygiY NC_003197.1 3341454 3342803 D sensor protein QseC 3341454..3342803 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254701 NP_462094.1 CDS mdaB NC_003197.1 3342910 3343491 D NADPH-specific quinone oxidoreductase 3342910..3343491 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254702 NP_462095.1 CDS ygiN NC_003197.1 3343523 3343837 D cytoplasmic protein 3343523..3343837 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254703 NP_462096.1 CDS parE NC_003197.1 3343962 3345854 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(3343962..3345854) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254704 NP_462097.1 CDS yqiA NC_003197.1 3345882 3346463 R Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase complement(3345882..3346463) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254705 NP_462098.1 CDS icc NC_003197.1 3346463 3347290 R cyclic 3',5'-adenosine monophosphate phosphodiesterase complement(3346463..3347290) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254706 NP_462099.1 CDS yqiB NC_003197.1 3347315 3347737 R cytoplasmic protein complement(3347315..3347737) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254707 NP_462100.1 CDS nudF NC_003197.1 3347734 3348366 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose pyrophosphatase NudF complement(3347734..3348366) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254708 NP_462101.2 CDS tolC NC_003197.1 3348573 3350042 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3348573..3350042 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254709 NP_462102.1 CDS STM3187 NC_003197.1 3350255 3350926 D hypothetical protein 3350255..3350926 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254710 NP_462103.1 CDS ygiC NC_003197.1 3350932 3352095 D glutathionylspermidine synthase 3350932..3352095 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254711 NP_462104.1 CDS ygiD NC_003197.1 3352157 3352987 R seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; cytoplasmic protein complement(3352157..3352987) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254712 NP_462105.1 CDS ygiE NC_003197.1 3353086 3353859 D zinc transporter ZupT 3353086..3353859 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254713 YP_006892407.1 CDS STM05680 NC_003197.1 3353926 3354102 R hypothetical protein complement(3353926..3354102) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865724 NP_462108.1 CDS STM3193 NC_003197.1 3356317 3356988 D thiol-disulfide isomerase and thioredoxin; disulfide bond formation protein DsbL 3356317..3356988 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254716 NP_462109.1 CDS STM3194 NC_003197.1 3357003 3357680 D protein-disulfide oxidoreductase DsbI 3357003..3357680 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254717 NP_462110.1 CDS ribB NC_003197.1 3357851 3358504 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(3357851..3358504) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254718 NP_462111.2 CDS STM3196.S NC_003197.1 3358941 3359240 D hypothetical protein 3358941..3359240 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254719 NP_462112.1 CDS glgS NC_003197.1 3359314 3359523 R Involved in glycogen synthesis. May be involved in glycogen priming; glycogen synthesis protein GlgS complement(3359314..3359523) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254720 NP_462113.1 CDS STM3198 NC_003197.1 3359781 3360401 D inner membrane protein 3359781..3360401 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254721 NP_462114.1 CDS yqiK NC_003197.1 3360420 3362099 D membrane protein 3360420..3362099 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254722 NP_462115.1 CDS rfaE NC_003197.1 3362559 3363992 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(3362559..3363992) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254723 NP_462116.1 CDS glnE NC_003197.1 3364040 3366883 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(3364040..3366883) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254724 NP_462117.1 CDS ygiF NC_003197.1 3367001 3368302 R cytoplasmic protein complement(3367001..3368302) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254725 NP_462118.1 CDS ygiM NC_003197.1 3368544 3369158 D contains SH3 domain protein; SH3 domain-containing protein 3368544..3369158 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254726 NP_462119.1 CDS cca NC_003197.1 3369221 3370462 D catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3369221..3370462 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254727 NP_462120.2 CDS uppP NC_003197.1 3370567 3371388 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl-diphosphatase complement(3370567..3371388) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254728 NP_462121.2 CDS folB NC_003197.1 3371486 3371845 R catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase complement(3371486..3371845) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254729 NP_462122.1 CDS ygiH NC_003197.1 3371952 3372563 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase 3371952..3372563 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254730 NP_462123.1 CDS gcp NC_003197.1 3372814 3373827 R catalyzes the formation of a threonylcarbamoyl group at position 37 in tRNAs that read codons beginning with adenine; tRNA N6-adenosine threonylcarbamoyltransferase complement(3372814..3373827) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254731 NP_462124.1 CDS rpsU NC_003197.1 3374055 3374270 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3374055..3374270 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254732 NP_462125.1 CDS dnaG NC_003197.1 3374506 3376251 D synthesizes RNA primers at the replication forks; DNA primase 3374506..3376251 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254733 NP_462126.2 CDS rpoD NC_003197.1 3376401 3378248 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 3376401..3378248 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254734 NP_462127.1 CDS mug NC_003197.1 3378372 3378878 R G/U mismatch-specific DNA glycosylase complement(3378372..3378878) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254735 NP_462128.1 CDS yqjH NC_003197.1 3379159 3379926 R transporter complement(3379159..3379926) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254737 NP_462129.1 CDS yqjI NC_003197.1 3380158 3380805 D transcriptional regulator 3380158..3380805 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254738 NP_462130.1 CDS STM3216 NC_003197.1 3380802 3382367 R methyl-accepting chemotaxis protein complement(3380802..3382367) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254739 NP_462131.1 CDS aer NC_003197.1 3382755 3384275 R aerotaxis sensor receptor complement(3382755..3384275) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254740 NP_462132.2 CDS oat NC_003197.1 3384678 3386084 D catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; putrescine aminotransferase 3384678..3386084 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254741 NP_462133.1 CDS fadH NC_003197.1 3386255 3388273 D 2,4-dienoyl-CoA reductase 3386255..3388273 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254742 NP_462134.1 CDS STM3220 NC_003197.1 3388354 3389490 R rRNA large subunit methyltransferase G complement(3388354..3389490) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254743 NP_462135.1 CDS ygjP NC_003197.1 3389576 3390073 D metal-dependent hydrolase 3389576..3390073 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254744 NP_462136.1 CDS ygjQ NC_003197.1 3390225 3390917 D integral membrane protein 3390225..3390917 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254745 NP_462137.1 CDS ygjR NC_003197.1 3391006 3392004 D dehydrogenase 3391006..3392004 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254746 NP_462138.1 CDS ygjT NC_003197.1 3392277 3393245 D inner membrane protein 3392277..3393245 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254747 NP_462139.1 CDS ygjU NC_003197.1 3393500 3394744 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3393500..3394744 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254748 NP_462140.1 CDS yqjA NC_003197.1 3395194 3395856 D DedA family; DedA family membrane protein 3395194..3395856 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254749 NP_462141.1 CDS yqjB NC_003197.1 3395860 3396243 D modulator protein MzrA 3395860..3396243 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254750 NP_462142.1 CDS yqjC NC_003197.1 3396388 3396756 D periplasmic protein 3396388..3396756 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254751 NP_462143.1 CDS yqjD NC_003197.1 3396798 3397103 D inner membrane protein 3396798..3397103 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254752 NP_462144.1 CDS yqjE NC_003197.1 3397106 3397504 D inner membrane protein 3397106..3397504 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254753 NP_462145.1 CDS yqjK NC_003197.1 3397501 3397800 D inner membrane protein 3397501..3397800 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254754 NP_462146.1 CDS STM3232 NC_003197.1 3397945 3398430 D hypothetical protein 3397945..3398430 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254755 NP_462147.1 CDS yqjG NC_003197.1 3398498 3399484 D glutathione S-transferase 3398498..3399484 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254756 NP_462148.1 CDS yhaH NC_003197.1 3399608 3399973 D inner membrane protein 3399608..3399973 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254757 NP_462149.1 CDS yhaJ NC_003197.1 3400012 3400908 R LysR family transcriptional regulator complement(3400012..3400908) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254758 NP_462150.1 CDS yhaK NC_003197.1 3401013 3401714 D cytoplasmic protein 3401013..3401714 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254759 NP_462151.1 CDS yhaL NC_003197.1 3401738 3401902 D cytoplasmic protein 3401738..3401902 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254760 NP_462152.1 CDS STM3238 NC_003197.1 3402015 3403325 R hypothetical protein complement(3402015..3403325) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254761 NP_462153.1 CDS yhaO NC_003197.1 3403351 3404682 R HAAAP family transport protein complement(3403351..3404682) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254762 NP_462154.1 CDS tdcG NC_003197.1 3404998 3406362 R L-serine deaminase complement(3404998..3406362) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254763 NP_462155.1 CDS tdcE NC_003197.1 3406432 3408726 R pyruvate formate-lyase 4/2-ketobutyrate formate-lyase complement(3406432..3408726) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254764 NP_462156.1 CDS tdcD NC_003197.1 3408760 3409968 R catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; propionate/acetate kinase complement(3408760..3409968) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254765 NP_462157.1 CDS tdcC NC_003197.1 3410034 3411365 R involved in the import of threonine and serine in combination with the import of a proton; threonine/serine transporter TdcC complement(3410034..3411365) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254766 NP_462158.1 CDS tdcB NC_003197.1 3411386 3412375 R catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase TdcB complement(3411386..3412375) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254767 NP_462159.1 CDS tdcA NC_003197.1 3412473 3413411 R regulates the tdcABCDEFG operon which is involved in amino acid degradation; DNA-binding transcriptional activator TdcA complement(3412473..3413411) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254768 NP_462160.1 CDS garK NC_003197.1 3415210 3416355 R glycerate kinase complement(3415210..3416355) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254770 NP_462161.1 CDS garR NC_003197.1 3416453 3417343 R catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase complement(3416453..3417343) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254771 NP_462162.1 CDS garL NC_003197.1 3417369 3418139 R cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; 5-keto-4-deoxy-D-glucarate aldolase complement(3417369..3418139) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254772 NP_462163.1 CDS garD NC_003197.1 3418669 3420240 D galactarate dehydratase 3418669..3420240 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254773 NP_462164.1 CDS STM3251 NC_003197.1 3420480 3421427 R ribokinase family sugar kinase complement(3420480..3421427) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254774 NP_462165.1 CDS agaR NC_003197.1 3421438 3422271 R AGA operon transcriptional repressor complement(3421438..3422271) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254775 NP_462166.1 CDS gatY NC_003197.1 3422605 3423459 D catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; D-tagatose-1,6-bisphosphate aldolase subunit GatY 3422605..3423459 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254776 NP_462167.1 CDS STM3254 NC_003197.1 3423470 3424384 D fructose-1-phosphate kinase 3423470..3424384 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254777 NP_462168.1 CDS STM3255 NC_003197.1 3424411 3425838 D PTS system fructose-specific transporter subunit IIB 3424411..3425838 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254778 NP_462169.1 CDS STM3256 NC_003197.1 3425825 3426631 D PTS system mannitol/fructose-specific transporter subunit IIA/phosphocarrier protein FPr 3425825..3426631 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254779 NP_462170.1 CDS gatZ NC_003197.1 3426829 3428100 D D-tagatose-1,6-bisphosphate aldolase subunit GatZ 3426829..3428100 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254780 NP_462171.1 CDS STM3258 NC_003197.1 3428115 3428579 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIA 3428115..3428579 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254781 NP_462172.1 CDS STM3259 NC_003197.1 3428610 3428894 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIB 3428610..3428894 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254782 NP_462173.1 CDS STM3260 NC_003197.1 3428898 3430271 D PTS system galactitol-specific transporter subunit IIC 3428898..3430271 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254783 NP_462174.1 CDS STM3261 NC_003197.1 3430315 3431358 D Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; galactitol-1-phosphate dehydrogenase 3430315..3431358 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254784 NP_462175.1 CDS STM3262 NC_003197.1 3431469 3432242 D galactitol utilization operon transcriptional repressor 3431469..3432242 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254785 NP_462176.1 CDS yraL NC_003197.1 3432400 3433263 R rRNA small subunit methyltransferase I complement(3432400..3433263) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254786 NP_462177.1 CDS STM3264 NC_003197.1 3433327 3435369 D hypothetical protein 3433327..3435369 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254787 NP_462178.1 CDS STM3265 NC_003197.1 3435327 3435722 D hypothetical protein 3435327..3435722 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254788 NP_462179.1 CDS yraO NC_003197.1 3435744 3436334 D Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; DnaA initiator-associating protein DiaA 3435744..3436334 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254789 NP_462180.1 CDS yraP NC_003197.1 3436344 3436919 D periplasmic protein 3436344..3436919 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254790 NP_462181.1 CDS yraR NC_003197.1 3436986 3437654 R nucleoside-diphosphate-sugar epimerase complement(3436986..3437654) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254791 NP_462182.1 CDS yhbO NC_003197.1 3437752 3438270 D intracellular proteinase 3437752..3438270 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254792 NP_462183.1 CDS STM3270 NC_003197.1 3438250 3438693 R hypothetical protein complement(3438250..3438693) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254793 NP_462184.2 CDS STM3271 NC_003197.1 3438746 3439048 D hypothetical protein 3438746..3439048 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254794 NP_462185.1 CDS yhbS NC_003197.1 3439035 3439538 R ABC superfamily membrane protein; ABC superfamily transport protein complement(3439035..3439538) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254795 NP_462186.1 CDS yhbT NC_003197.1 3439532 3440056 R lipid carrier protein complement(3439532..3440056) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254796 NP_462187.1 CDS yhbU NC_003197.1 3440273 3441268 D protease 3440273..3441268 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254797 NP_462188.2 CDS yhbV NC_003197.1 3441277 3442155 D protease 3441277..3442155 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254798 NP_462189.1 CDS yhbW NC_003197.1 3442333 3443340 D alkanal monooxygenase 3442333..3443340 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254799 NP_462190.1 CDS STM3277 NC_003197.1 3443318 3444037 R inner membrane protein complement(3443318..3444037) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254800 NP_462191.1 CDS STM3278 NC_003197.1 3444196 3444726 D cytoplasmic protein 3444196..3444726 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254801 NP_462192.1 CDS mtr NC_003197.1 3444787 3446031 R tryptophan transporter of high affinity; HAAAP family tryptophan-specific transport protein complement(3444787..3446031) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254802 NP_462193.2 CDS deaD NC_003197.1 3446185 3448074 R participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; ATP-dependent RNA helicase DeaD complement(3446185..3448074) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254803 NP_462194.1 CDS nlpI NC_003197.1 3448253 3449137 R lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI complement(3448253..3449137) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254804 NP_462195.1 CDS pnp NC_003197.1 3449247 3451382 R polyribonucleotide nucleotidyltransferas complement(3449247..3451382) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254805 NP_462196.1 CDS rpsO NC_003197.1 3451624 3451893 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(3451624..3451893) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254806 NP_462197.1 CDS truB NC_003197.1 3452044 3452988 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(3452044..3452988) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254807 NP_462198.1 CDS rbfA NC_003197.1 3452988 3453389 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(3452988..3453389) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254808 NP_462199.1 CDS infB NC_003197.1 3453610 3456288 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(3453610..3456288) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254809 NP_462200.1 CDS nusA NC_003197.1 3456313 3457815 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription termination/antitermination protein NusA complement(3456313..3457815) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254810 NP_462201.2 CDS rimP NC_003197.1 3457843 3458295 R ribosome maturation factor RimP complement(3457843..3458295) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254811 NP_462202.2 CDS argG NC_003197.1 3458923 3460266 D catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 3458923..3460266 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254813 NP_462203.1 CDS STM3291 NC_003197.1 3460352 3461416 R cytoplasmic protein complement(3460352..3461416) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254814 NP_462204.1 CDS secG NC_003197.1 3461852 3462184 R preprotein translocase IISp family protein complement(3461852..3462184) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254816 NP_462205.1 CDS glmM NC_003197.1 3462407 3463744 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(3462407..3463744) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254817 NP_462206.1 CDS folP NC_003197.1 3463737 3464585 R catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate; 7,8-dihydropteroate synthase complement(3463737..3464585) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254818 NP_462207.1 CDS hflB NC_003197.1 3464690 3466624 R inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; ATP-dependent metalloprotease complement(3464690..3466624) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254819 NP_462208.1 CDS rlmE NC_003197.1 3466728 3467354 R Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; rRNA large subunit methyltransferase E complement(3466728..3467354) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254820 NP_462209.2 CDS yhbY NC_003197.1 3467481 3467774 D RNA binding protein found associated to pre-50S subunit of the ribosome; role in ribosome assembly; necessary for optimal growth but not cell viability; RNA-binding protein YhbY 3467481..3467774 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254821 NP_462210.1 CDS greA NC_003197.1 3467930 3468406 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(3467930..3468406) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254822 NP_462211.1 CDS dacB NC_003197.1 3468654 3470087 D penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 3468654..3470087 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254823 NP_462212.1 CDS obgE NC_003197.1 3470219 3471391 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(3470219..3471391) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254824 NP_462213.1 CDS rpmA NC_003197.1 3472501 3472758 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(3472501..3472758) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254826 NP_462214.1 CDS rplU NC_003197.1 3472778 3473089 R 50S ribosomal protein L21 complement(3472778..3473089) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254827 NP_462215.1 CDS ispB NC_003197.1 3473347 3474318 D octaprenyl diphosphate synthase 3473347..3474318 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254828 NP_462216.1 CDS nlp NC_003197.1 3474550 3474837 D activator of maltose metabolism genes; DNA-binding transcriptional regulator Nlp 3474550..3474837 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254829 NP_462217.1 CDS murA NC_003197.1 3474895 3476154 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3474895..3476154) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254830 NP_462218.1 CDS yrbA NC_003197.1 3476208 3476501 R BolA family; BolA family transcriptional regulator complement(3476208..3476501) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254831 NP_462219.1 CDS yrbB NC_003197.1 3476650 3476946 R STAS domain; STAS domain-containing protein complement(3476650..3476946) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254832 NP_462220.1 CDS yrbC NC_003197.1 3476946 3477581 R ABC superfamily; ABC transporter substrate-binding protein complement(3476946..3477581) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254833 NP_462221.1 CDS yrbD NC_003197.1 3477600 3478151 R ABC superfamily binding protein; ABC transporter substrate-binding protein complement(3477600..3478151) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254834 NP_462222.1 CDS yrbE NC_003197.1 3478156 3478938 R ABC superfamily membrane protein; ABC transporter permease complement(3478156..3478938) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254835 NP_462223.1 CDS yrbF NC_003197.1 3478946 3479758 R ABC transporter ATP-binding protein complement(3478946..3479758) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254836 NP_462224.1 CDS yrbG NC_003197.1 3479971 3480948 D YrbG; inner membrane protein involved in cell envelope integrity; sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; calcium/sodium:proton antiporter 3479971..3480948 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254837 NP_462225.1 CDS kdsD NC_003197.1 3480962 3481948 D arabinose 5-phosphate isomerase KdsD 3480962..3481948 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254838 NP_462226.1 CDS kdsC NC_003197.1 3481969 3482535 D forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC 3481969..3482535 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254839 NP_462227.1 CDS lptC NC_003197.1 3482532 3483107 D lipopolysaccharide export system protein LptC 3482532..3483107 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254840 NP_462228.1 CDS lptA NC_003197.1 3483076 3483630 D LptA; periplasmic binding protein part of a ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system; lipopolysaccharide ABC transporter substrate-binding protein LptA 3483076..3483630 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254841 NP_462229.1 CDS yhbG NC_003197.1 3483637 3484362 D lipopolysaccharide ABC transporter ATP-binding protein LptB 3483637..3484362 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254842 NP_462230.1 CDS rpoN NC_003197.1 3484410 3485843 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 3484410..3485843 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254843 NP_462231.1 CDS yhbH NC_003197.1 3485866 3486153 D sigma(54) modulation protein; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; ribosome hibernation promoting factor 3485866..3486153 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254844 NP_462232.1 CDS ptsN NC_003197.1 3486271 3486762 D PTS system transporter subunit IIA 3486271..3486762 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254845 NP_462233.1 CDS STM3323 NC_003197.1 3486808 3487662 D kinase; contains P-loop; hypothetical protein 3486808..3487662 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254846 NP_462234.1 CDS ptsO NC_003197.1 3487659 3487931 D N-regulated phosphocarrier protein NPr 3487659..3487931 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254847 NP_462235.1 CDS yrbL NC_003197.1 3488180 3488812 D cytoplasmic protein 3488180..3488812 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254848 NP_462236.1 CDS mtgA NC_003197.1 3488887 3489615 R glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase complement(3488887..3489615) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254849 NP_462237.1 CDS yhbL NC_003197.1 3489612 3490265 R isoprenoid biosynthesis protein complement(3489612..3490265) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254850 NP_462238.1 CDS arcB NC_003197.1 3490492 3492828 R sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor histidine kinase ArcB complement(3490492..3492828) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254851 NP_462239.1 CDS yhcC NC_003197.1 3492922 3493851 R FeS oxidoreductase complement(3492922..3493851) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254852 NP_462240.1 CDS gltB NC_003197.1 3494523 3498983 D catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 3494523..3498983 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254853 NP_462241.1 CDS gltD NC_003197.1 3498993 3500411 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3498993..3500411 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254854 NP_462242.1 CDS yhcG NC_003197.1 3500618 3501721 D cytoplasmic protein 3500618..3501721 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254855 NP_462243.1 CDS codB NC_003197.1 3501838 3503091 D cytosine permease 3501838..3503091 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254856 NP_462244.1 CDS STM3334 NC_003197.1 3503078 3504358 D Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3503078..3504358 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254857 NP_462245.1 CDS yhcH NC_003197.1 3504441 3504908 R cytoplasmic protein complement(3504441..3504908) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254858 NP_462246.1 CDS nanK NC_003197.1 3504905 3505780 R catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase complement(3504905..3505780) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254859 NP_462247.1 CDS nanE NC_003197.1 3505777 3506466 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(3505777..3506466) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254860 NP_462248.1 CDS nanT NC_003197.1 3506513 3508003 R sialic acid transporter complement(3506513..3508003) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254861 NP_462249.1 CDS nanA NC_003197.1 3508119 3509012 R catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase complement(3508119..3509012) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254862 NP_462250.1 CDS yhcK NC_003197.1 3509147 3509938 R Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; transcriptional regulator NanR complement(3509147..3509938) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254863 NP_462251.1 CDS sspB NC_003197.1 3510047 3510547 R ClpXP protease specificity-enhancing factor complement(3510047..3510547) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254864 NP_462252.1 CDS sspA NC_003197.1 3510553 3511191 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A complement(3510553..3511191) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254865 NP_462253.1 CDS STM3343 NC_003197.1 3511454 3512206 R cytoplasmic protein complement(3511454..3512206) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254866 NP_462254.1 CDS rpsI NC_003197.1 3512406 3512798 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(3512406..3512798) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254867 NP_462255.1 CDS rplM NC_003197.1 3512814 3513242 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(3512814..3513242) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254868 NP_462256.1 CDS yhcM NC_003197.1 3513545 3514669 R ATPase complement(3513545..3514669) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254869 NP_462257.1 CDS yhcB NC_003197.1 3514856 3515260 D periplasmic protein 3514856..3515260 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254870 NP_462258.1 CDS degQ NC_003197.1 3515417 3516784 D serine endoprotease 3515417..3516784 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254871 NP_462259.1 CDS degS NC_003197.1 3516877 3517947 D serine endoprotease 3516877..3517947 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254872 NP_462260.1 CDS STM3350 NC_003197.1 3517981 3518712 R inner membrane protein complement(3517981..3518712) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254873 NP_462261.1 CDS oadB NC_003197.1 3518732 3520033 R oxaloacetate decarboxylase beta chain (SW:DCOB_SALTY); oxaloacetate decarboxylase subunit beta complement(3518732..3520033) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254874 NP_462262.1 CDS oadA NC_003197.1 3520046 3521821 R catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase subunit alpha complement(3520046..3521821) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254875 NP_462263.1 CDS oadG NC_003197.1 3521837 3522091 R catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma complement(3521837..3522091) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254876 NP_462264.1 CDS STM3354 NC_003197.1 3522247 3522864 R Involved in the tartrate degradation pathway; L(+)-tartrate dehydratase subunit beta complement(3522247..3522864) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254877 NP_462265.1 CDS STM3355 NC_003197.1 3522864 3523763 R Involved in the tartrate degradation pathway; tartrate dehydratase subunit alpha complement(3522864..3523763) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254878 NP_462266.1 CDS STM3356 NC_003197.1 3523796 3525064 R cation transporter complement(3523796..3525064) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254879 NP_462267.1 CDS STM3357 NC_003197.1 3525275 3525940 R GntR family; GntR family regulatory protein complement(3525275..3525940) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254880 NP_462268.1 CDS STM3358 NC_003197.1 3525927 3526556 R GntR family; GntR family regulatory protein complement(3525927..3526556) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254881 NP_462269.1 CDS mdh NC_003197.1 3526676 3527614 R oxidizes malate to oxaloacetate; malate dehydrogenase complement(3526676..3527614) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254882 NP_462270.1 CDS argR NC_003197.1 3528028 3528498 D regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 3528028..3528498 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254883 NP_462271.1 CDS yhcN NC_003197.1 3528863 3529126 D outer membrane protein 3528863..3529126 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254884 NP_462272.1 CDS STM3362 NC_003197.1 3529230 3529496 D periplasmic protein 3529230..3529496 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254885 NP_462273.1 CDS yhcO NC_003197.1 3529556 3529828 R cytoplasmic protein complement(3529556..3529828) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254886 NP_462274.1 CDS aaeB NC_003197.1 3530000 3531967 R with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux pump subunit AaeB complement(3530000..3531967) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254887 NP_462275.1 CDS aaeA NC_003197.1 3531973 3532905 R with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux pump subunit AaeA complement(3531973..3532905) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254888 NP_462276.1 CDS aaeX NC_003197.1 3532913 3533116 R membrane protein AaeX; the gene is a member of the aaeXAB operon; membrane protein AaeX complement(3532913..3533116) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254889 NP_462277.1 CDS yhcS NC_003197.1 3533298 3534227 D LysR family transcriptional regulator 3533298..3534227 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254890 NP_462278.1 CDS tldD NC_003197.1 3534350 3535795 R responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; protease TldD complement(3534350..3535795) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254891 NP_462279.1 CDS STM3369 NC_003197.1 3535940 3539740 R hypothetical protein complement(3535940..3539740) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254892 NP_462280.1 CDS cafA NC_003197.1 3539847 3541316 R involved in the processing of the 5'end of 16S rRNA; RNase G complement(3539847..3541316) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254893 NP_462281.1 CDS maf NC_003197.1 3541306 3541899 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(3541306..3541899) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254894 NP_462282.1 CDS mreD NC_003197.1 3541908 3542399 R part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD complement(3541908..3542399) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254895 NP_462283.1 CDS mreC NC_003197.1 3542399 3543451 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(3542399..3543451) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254896 NP_462284.1 CDS mreB NC_003197.1 3543516 3544559 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(3543516..3544559) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254897 NP_951055.1 CDS STM3374.1n NC_003197.1 3544667 3544858 D hypothetical protein 3544667..3544858 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673730 NP_462285.1 CDS yhdA NC_003197.1 3544867 3546807 R regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD complement(3544867..3546807) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254898 NP_462286.1 CDS yhdH NC_003197.1 3547011 3547985 D oxidoreductase 3547011..3547985 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254899 NP_462287.1 CDS yedY NC_003197.1 3548098 3549102 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase catalytic subunit YedY 3548098..3549102 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254900 NP_462288.1 CDS yedZ NC_003197.1 3549103 3549702 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase heme-binding subunit YedZ 3549103..3549702 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254901 NP_462289.1 CDS accB NC_003197.1 3550095 3550565 D composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3550095..3550565 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254902 NP_462290.1 CDS accC NC_003197.1 3550576 3551925 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 3550576..3551925 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254903 NP_462291.1 CDS yhdT NC_003197.1 3552034 3552276 D inner membrane protein 3552034..3552276 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254904 NP_462292.1 CDS panF NC_003197.1 3552266 3553717 D mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; SSS family sodium/pantothenate symporter 3552266..3553717 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254905 NP_462293.1 CDS prmA NC_003197.1 3553729 3554610 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3553729..3554610 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254906 NP_462294.1 CDS yhdG NC_003197.1 3555271 3556236 D TIM-barrel enzyme; hypothetical 35.9 kDa protein in pmrA-fis intergenic region (SW:YHDG_SALTY); tRNA-dihydrouridine synthase B 3555271..3556236 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254907 NP_462295.1 CDS fis NC_003197.1 3556262 3556558 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 3556262..3556558 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254908 NP_462296.1 CDS yhdJ NC_003197.1 3556644 3557528 D methyltransferase 3556644..3557528 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254909 NP_462297.1 CDS yhdU NC_003197.1 3557611 3557775 D periplasmic protein 3557611..3557775 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254910 NP_462298.1 CDS STM3388 NC_003197.1 3557926 3560025 D membrane domain involved in; diguanylate cyclase/phosphodiesterase domain 1; diguanylate cyclase/phosphodiesterase domain 2; signal transduction protein 3557926..3560025 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254911 NP_462299.1 CDS envR NC_003197.1 3560028 3560690 R DNA-binding transcriptional regulator EnvR complement(3560028..3560690) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254912 NP_462300.1 CDS acrE NC_003197.1 3561104 3562261 D multidrug efflux protein AcrE 3561104..3562261 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254913 NP_462301.1 CDS acrF NC_003197.1 3562273 3565386 D multidrug efflux protein AcrF 3562273..3565386 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254914 NP_462302.1 CDS yhdV NC_003197.1 3565622 3565843 D outer membrane lipoprotein 3565622..3565843 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254915 NP_462303.1 CDS yrdA NC_003197.1 3572482 3573036 D ferripyochelin-binding protein 3572482..3573036 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254922 NP_462304.1 CDS yrdB NC_003197.1 3573012 3573269 R periplasmic protein complement(3573012..3573269) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254923 NP_462305.1 CDS aroE NC_003197.1 3573266 3574084 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate dehydrogenase complement(3573266..3574084) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254924 NP_462306.1 CDS tsaC NC_003197.1 3574089 3574661 R RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA; threonylcarbamoyl-AMP synthase complement(3574089..3574661) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254925 NP_462307.1 CDS yrdD NC_003197.1 3574666 3575208 R DNA topoisomerase complement(3574666..3575208) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254926 NP_462308.1 CDS STM3404 NC_003197.1 3575235 3575708 R hypothetical protein complement(3575235..3575708) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254927 NP_462309.1 CDS smf NC_003197.1 3575680 3576804 R DNA protecting protein DprA complement(3575680..3576804) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254928 NP_462310.1 CDS def NC_003197.1 3576936 3577445 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 3576936..3577445 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254929 NP_462311.1 CDS fmt NC_003197.1 3577461 3578408 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 3577461..3578408 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254930 NP_462312.1 CDS sun NC_003197.1 3578460 3579749 D catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; rRNA small subunit methyltransferase B 3578460..3579749 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254931 NP_462313.1 CDS trkA NC_003197.1 3579771 3581147 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; Trk system potassium uptake protein TrkA 3579771..3581147 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254932 NP_462314.1 CDS mscL NC_003197.1 3581289 3581702 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 3581289..3581702 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254933 NP_462315.1 CDS STM3411 NC_003197.1 3581638 3581907 R cytoplasmic protein complement(3581638..3581907) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254934 NP_462316.1 CDS zntR NC_003197.1 3581965 3582390 R mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator complement(3581965..3582390) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254935 NP_462317.1 CDS yhdN NC_003197.1 3582401 3582769 R cytoplasmic protein complement(3582401..3582769) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254936 NP_462318.1 CDS rplQ NC_003197.1 3582877 3583260 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(3582877..3583260) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254937 NP_462319.1 CDS rpoA NC_003197.1 3583301 3584290 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(3583301..3584290) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254938 NP_462320.1 CDS rpsD NC_003197.1 3584316 3584936 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(3584316..3584936) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254939 NP_462321.1 CDS rpsK NC_003197.1 3584970 3585359 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(3584970..3585359) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254940 NP_462322.1 CDS rpsM NC_003197.1 3585376 3585732 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(3585376..3585732) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254941 NP_462323.1 CDS rpmJ NC_003197.1 3585879 3585995 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(3585879..3585995) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254942 NP_462324.1 CDS secY NC_003197.1 3586027 3587358 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(3586027..3587358) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254943 NP_462325.1 CDS rplO NC_003197.1 3587366 3587800 R late assembly protein; 50S ribosomal protein L15 complement(3587366..3587800) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254944 NP_462326.1 CDS rpmD NC_003197.1 3587804 3587983 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(3587804..3587983) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254945 NP_462327.1 CDS rpsE NC_003197.1 3587987 3588490 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(3587987..3588490) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254946 NP_462328.1 CDS rplR NC_003197.1 3588505 3588858 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(3588505..3588858) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254947 NP_462329.1 CDS rplF NC_003197.1 3588868 3589401 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(3588868..3589401) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254948 NP_462330.1 CDS rpsH NC_003197.1 3589414 3589806 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(3589414..3589806) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254949 NP_462331.3 CDS rpsN NC_003197.1 3589840 3590145 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(3589840..3590145) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254950 NP_462332.1 CDS rplE NC_003197.1 3590160 3590699 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(3590160..3590699) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254951 NP_462333.1 CDS rplX NC_003197.1 3590714 3591028 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(3590714..3591028) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254952 NP_462334.1 CDS rplN NC_003197.1 3591039 3591410 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(3591039..3591410) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254953 NP_462335.1 CDS rpsQ NC_003197.1 3591574 3591828 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(3591574..3591828) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254954 NP_462336.1 CDS rpmC NC_003197.1 3591828 3592019 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(3591828..3592019) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254955 NP_462337.1 CDS rplP NC_003197.1 3592019 3592429 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(3592019..3592429) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254956 NP_462338.1 CDS rpsC NC_003197.1 3592442 3593143 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(3592442..3593143) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254957 NP_462339.1 CDS rplV NC_003197.1 3593161 3593493 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(3593161..3593493) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254958 NP_462340.1 CDS rpsS NC_003197.1 3593508 3593786 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(3593508..3593786) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254959 NP_462341.1 CDS rplB NC_003197.1 3593803 3594624 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(3593803..3594624) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254960 NP_462342.1 CDS rplW NC_003197.1 3594642 3594944 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(3594642..3594944) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254961 NP_462343.1 CDS rplD NC_003197.1 3594941 3595546 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(3594941..3595546) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254962 NP_462344.1 CDS rplC NC_003197.1 3595557 3596186 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(3595557..3596186) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254963 NP_462345.1 CDS rpsJ NC_003197.1 3596219 3596530 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(3596219..3596530) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254964 NP_462346.1 CDS hopD NC_003197.1 3596910 3597377 D leader peptidase HopD 3596910..3597377 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254965 NP_462347.1 CDS bfr NC_003197.1 3597374 3597850 R iron storage protein; bacterioferritin complement(3597374..3597850) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254966 NP_462348.1 CDS bfd NC_003197.1 3597923 3598117 R regulatory or redox component complexing with Bfr in iron storage and mobility (SW:BFD_SALTY); bacterioferritin-associated ferredoxin complement(3597923..3598117) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254967 NP_462349.1 CDS tuf NC_003197.1 3598302 3599486 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(3598302..3599486) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254968 NP_462350.1 CDS fusA NC_003197.1 3599558 3601672 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3599558..3601672) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254969 NP_462351.1 CDS rpsG NC_003197.1 3601769 3602239 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(3601769..3602239) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254970 NP_462352.1 CDS rpsL NC_003197.1 3602335 3602709 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(3602335..3602709) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254971 NP_462353.1 CDS yheL NC_003197.1 3602835 3603122 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; tRNA 2-thiouridine synthesizing protein TusB complement(3602835..3603122) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254972 NP_462354.1 CDS yheM NC_003197.1 3603130 3603486 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; tRNA 2-thiouridine synthesizing protein TusC complement(3603130..3603486) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254973 NP_462355.1 CDS yheN NC_003197.1 3603486 3603872 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; tRNA 2-thiouridine synthesizing protein TusD complement(3603486..3603872) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254974 NP_462356.1 CDS yheO NC_003197.1 3603872 3604594 R regulatory protein complement(3603872..3604594) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254975 NP_462357.1 CDS fkpA NC_003197.1 3604871 3605689 R rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase complement(3604871..3605689) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254976 NP_462358.1 CDS STM3454 NC_003197.1 3605909 3606127 D hypothetical protein 3605909..3606127 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254977 NP_462359.1 CDS slyD NC_003197.1 3606315 3606905 R rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase complement(3606315..3606905) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254978 NP_462360.1 CDS yheV NC_003197.1 3607000 3607200 R cytoplasmic protein complement(3607000..3607200) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254979 NP_462361.1 CDS kefB NC_003197.1 3607211 3609016 R involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB complement(3607211..3609016) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254980 NP_462362.1 CDS yheR NC_003197.1 3609016 3609567 R required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG complement(3609016..3609567) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254981 NP_462363.1 CDS yheS NC_003197.1 3609833 3611740 D ABC transporter ATP-binding protein 3609833..3611740 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254982 NP_462364.1 CDS STM3461 NC_003197.1 3612126 3612437 R cytoplasmic protein complement(3612126..3612437) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254984 NP_462365.1 CDS yheT NC_003197.1 3612635 3613702 D alpha/beta-hydrolase fold; hydrolase 3612635..3613702 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254985 NP_462366.1 CDS STM3463 NC_003197.1 3613710 3613916 D hypothetical protein 3613710..3613916 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254986 NP_462367.1 CDS prkB NC_003197.1 3613968 3614837 D phosphoribulokinase 3613968..3614837 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254987 NP_462368.1 CDS yhfA NC_003197.1 3614933 3615337 R inner membrane protein complement(3614933..3615337) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254988 NP_462369.1 CDS crp NC_003197.1 3615645 3616277 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-activated global transcriptional regulator 3615645..3616277 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254989 NP_462370.1 CDS yhfK NC_003197.1 3616326 3618413 D inner membrane protein 3616326..3618413 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254990 NP_462371.1 CDS argD NC_003197.1 3618456 3619673 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein complement(3618456..3619673) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254991 NP_462372.1 CDS pabA NC_003197.1 3619759 3620322 R aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; minodeoxychorismate synthase component II complement(3619759..3620322) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254992 NP_462373.1 CDS fic NC_003197.1 3620354 3620956 R cell filamentation protein Fic (SW:FIC_SALTY); stationary phase induced gene; affects cell division; adenosine monophosphate-protein transferase Fic complement(3620354..3620956) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254993 NP_462374.1 CDS STM3471 NC_003197.1 3620946 3621113 R hypothetical 6.8 kDa protein in fic-ppiA intergenic region (SW:YHFG_SALTY); hypothetical protein complement(3620946..3621113) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254994 NP_462375.1 CDS ppiA NC_003197.1 3621222 3621794 R peptidyl-prolyl cis-trans isomerase A (SW:PPIA_SALTY); rotamase A; peptidyl-prolyl cis-trans isomerase A complement(3621222..3621794) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254995 NP_462376.1 CDS yhfC NC_003197.1 3622071 3623252 D transporter 3622071..3623252 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254996 NP_462377.1 CDS nirB NC_003197.1 3623515 3626058 D nitrite reductase large subunit 3623515..3626058 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254997 NP_462378.1 CDS nirD NC_003197.1 3626055 3626381 D involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; nitrite reductase small subunit 3626055..3626381 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254998 NP_462379.1 CDS nirC NC_003197.1 3626647 3627456 D member of the FNT family of formate and nitrite transporters; nitrite transporter NirC 3626647..3627456 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254999 NP_462380.1 CDS cysG NC_003197.1 3627468 3628841 D multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin; siroheme synthase 3627468..3628841 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255000 NP_462381.1 CDS bigA NC_003197.1 3629167 3635028 D surface-exposed virulence protein BigA 3629167..3635028 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255001 NP_462382.1 CDS tnpA_5 NC_003197.1 3635160 3635618 R transposase for insertion sequence element is200 (SW:T200_SALTY); insertion sequence element IS200 transposase complement(3635160..3635618) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255002 NP_462383.1 CDS yhfL NC_003197.1 3635932 3636102 D outer membrane lipoprotein 3635932..3636102 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255003 NP_462384.1 CDS trpS NC_003197.1 3636247 3637251 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophan--tRNA ligase complement(3636247..3637251) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255004 NP_462385.1 CDS gph NC_003197.1 3637244 3638002 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase complement(3637244..3638002) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255005 NP_462386.1 CDS rpe NC_003197.1 3637995 3638672 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(3637995..3638672) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255006 NP_462387.1 CDS dam NC_003197.1 3638690 3639526 R DNA adenine methylase (SW:DMA_SALTY); DNA adenine methylase complement(3638690..3639526) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255007 NP_462388.1 CDS damX NC_003197.1 3639707 3640984 R membrane protein complement(3639707..3640984) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255008 NP_462389.1 CDS aroB NC_003197.1 3641082 3642170 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(3641082..3642170) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255009 NP_462390.1 CDS aroK NC_003197.1 3642227 3642748 R type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I complement(3642227..3642748) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255010 NP_462391.1 CDS hofQ NC_003197.1 3643213 3644451 R outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; transporter complement(3643213..3644451) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255011 NP_462392.1 CDS yrfA NC_003197.1 3644366 3644767 R inner membrane protein complement(3644366..3644767) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255012 NP_462393.1 CDS yrfB NC_003197.1 3644757 3645230 R inner membrane protein complement(3644757..3645230) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255013 NP_462394.1 CDS yrfC NC_003197.1 3645214 3645753 R inner membrane protein complement(3645214..3645753) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255014 NP_462395.1 CDS yrfD NC_003197.1 3645753 3646532 R periplasmic protein complement(3645753..3646532) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255015 NP_462396.2 CDS mrcA NC_003197.1 3646653 3649205 D bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; bifunctional murein transglycosylase/murein transpeptidase 3646653..3649205 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255016 NP_462397.2 CDS nudE NC_003197.1 3649301 3649864 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE complement(3649301..3649864) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255017 NP_462398.1 CDS igaA NC_003197.1 3650187 3652319 D intracellular growth attenuator protein IgaA 3650187..3652319 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255018 NP_462399.1 CDS yrfG NC_003197.1 3652384 3653052 D hydrolase 3652384..3653052 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255019 NP_462400.1 CDS yrfH NC_003197.1 3653063 3653464 D predicted small RNA-binding protein; ribosome-associated heat shock protein Hsp15 3653063..3653464 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255020 NP_462401.2 CDS hslO NC_003197.1 3653489 3654367 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 3653489..3654367 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255021 NP_462402.1 CDS yhgE NC_003197.1 3654477 3656186 R inner membrane protein complement(3654477..3656186) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255022 NP_462403.1 CDS pckA NC_003197.1 3656566 3658182 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 3656566..3658182 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255023 NP_462404.1 CDS envZ NC_003197.1 3658257 3659609 R membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein EnvZ complement(3658257..3659609) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255024 NP_462405.1 CDS ompR NC_003197.1 3659606 3660325 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator OmpR complement(3659606..3660325) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255025 NP_462406.1 CDS greB NC_003197.1 3660551 3661024 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 3660551..3661024 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255026 NP_462407.2 CDS yhgF NC_003197.1 3661123 3663453 D RNase R 3661123..3663453 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255027 NP_462408.1 CDS feoA NC_003197.1 3663890 3664117 D ferrous iron transport protein A 3663890..3664117 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255028 NP_462409.1 CDS feoB NC_003197.1 3664136 3666454 D cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; ferrous iron transport protein B 3664136..3666454 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255029 NP_462410.1 CDS yhgG NC_003197.1 3666467 3666703 D ferrous iron transport protein C 3666467..3666703 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255030 NP_462411.1 CDS STM3508 NC_003197.1 3666938 3667852 D cytoplasmic protein 3666938..3667852 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255031 NP_462412.1 CDS bioH NC_003197.1 3667888 3668658 R Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; pimeloyl-ACP methyl ester esterase complement(3667888..3668658) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255032 NP_462413.1 CDS STM3510 NC_003197.1 3668696 3669379 D hypothetical protein 3668696..3669379 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255033 NP_462414.1 CDS yhgI NC_003197.1 3669438 3670013 D Fe/S biogenesis protein NfuA 3669438..3670013 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255034 NP_462415.1 CDS gntT NC_003197.1 3670390 3671706 D high-affinity gluconate permease 3670390..3671706 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255035 NP_462416.1 CDS malQ NC_003197.1 3671825 3673903 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(3671825..3673903) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255036 NP_462417.1 CDS malP NC_003197.1 3673913 3676306 R maltodextrin phosphorylase complement(3673913..3676306) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255037 NP_462418.1 CDS malT NC_003197.1 3676900 3679605 D Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; HTH-type transcriptional regulator MalT 3676900..3679605 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255038 NP_462419.1 CDS STM3516 NC_003197.1 3679693 3679968 R cytoplasmic protein complement(3679693..3679968) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255039 NP_462420.1 CDS STM3517 NC_003197.1 3679971 3680231 R DNA-damage-inducibile protein complement(3679971..3680231) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255040 NP_462421.1 CDS rtcA NC_003197.1 3680340 3681359 R catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester; RNA 3'-terminal-phosphate cyclase complement(3680340..3681359) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255041 NP_462422.1 CDS rtcB NC_003197.1 3681363 3682580 R RNA-splicing ligase RtcB complement(3681363..3682580) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255042 NP_462423.1 CDS STM3521 NC_003197.1 3683125 3684678 R ribonucleoprotein related-protein complement(3683125..3684678) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255044 NP_462424.1 CDS rtcR NC_003197.1 3684868 3686451 D rtcBA sigma 54-dependent regulator 3684868..3686451 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255045 NP_462425.1 CDS glpR NC_003197.1 3686448 3687206 R represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism; DNA-binding transcriptional repressor GlpR complement(3686448..3687206) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255046 NP_462426.1 CDS glpG NC_003197.1 3687300 3688130 R protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; rhomboid protease GlpG complement(3687300..3688130) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255047 NP_462427.1 CDS glpE NC_003197.1 3688206 3688532 R belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase GlpE complement(3688206..3688532) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255048 NP_462428.1 CDS glpD NC_003197.1 3688731 3690239 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 3688731..3690239 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255049 NP_462429.1 CDS STM3527 NC_003197.1 3690286 3690831 R inner membrane protein complement(3690286..3690831) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255050 NP_462430.1 CDS STM3528 NC_003197.1 3690841 3692400 R periplasmic phosphate-binding protein complement(3690841..3692400) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255051 NP_462431.1 CDS gldA NC_003197.1 3692494 3693603 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase complement(3692494..3693603) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255052 NP_462432.1 CDS STM3531 NC_003197.1 3695271 3696986 D dihydroxyacid dehydratase 3695271..3696986 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255054 NP_462433.1 CDS STM3532 NC_003197.1 3697030 3697935 D dihydrodipicolinate synthetase 3697030..3697935 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255055 NP_462434.1 CDS STM3533 NC_003197.1 3697979 3698734 R transcriptional regulator complement(3697979..3698734) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255056 NP_462435.1 CDS glgP NC_003197.1 3698912 3701359 R glycogen phosphorylase complement(3698912..3701359) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255057 NP_462436.1 CDS glgA NC_003197.1 3701379 3702812 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase complement(3701379..3702812) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255058 NP_462437.1 CDS glgC NC_003197.1 3702812 3704107 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(3702812..3704107) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255059 NP_462438.1 CDS glgX NC_003197.1 3704122 3706098 R catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen; glycogen debranching protein complement(3704122..3706098) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255060 NP_462439.1 CDS glgB NC_003197.1 3706095 3708281 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; 1,4-alpha-glucan branching protein GlgB complement(3706095..3708281) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255061 NP_462440.1 CDS asd NC_003197.1 3708628 3709734 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(3708628..3709734) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255062 NP_462442.1 CDS gntU NC_003197.1 3710158 3711498 R low affinity gluconate transporter complement(3710158..3711498) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255064 NP_462443.1 CDS gntK NC_003197.1 3711495 3712028 R thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; gluconate kinase complement(3711495..3712028) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255065 NP_462444.1 CDS gntR NC_003197.1 3712167 3713162 R gluconate operon transcriptional repressor complement(3712167..3713162) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255066 NP_462445.1 CDS yhhW NC_003197.1 3713292 3713987 R cytoplasmic protein complement(3713292..3713987) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255067 NP_462446.1 CDS yhhX NC_003197.1 3714111 3715148 R oxidoreductase complement(3714111..3715148) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255068 NP_462447.1 CDS yhhY NC_003197.1 3715617 3716105 D YhhY; regulated by the fur regulator; unknown function; acetyltransferase 3715617..3716105 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255069 NP_462448.2 CDS STM3547.Sc NC_003197.1 3716637 3717584 D regulator of sugar metabolism; transcriptional regulator 3716637..3717584 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255070 NP_462449.1 CDS STM3548 NC_003197.1 3717600 3718361 D cytoplasmic protein 3717600..3718361 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255071 NP_462450.1 CDS STM3549 NC_003197.1 3718415 3719386 D inner membrane protein 3718415..3719386 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255072 NP_462451.1 CDS STM3550 NC_003197.1 3719383 3720417 D phosphotriesterase 3719383..3720417 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255073 NP_462452.1 CDS ggt NC_003197.1 3720462 3722204 R periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides; gamma-glutamyltranspeptidase complement(3720462..3722204) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255074 NP_462453.1 CDS yhhA NC_003197.1 3722330 3722746 D outer membrane protein 3722330..3722746 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255075 NP_462454.1 CDS ugpQ NC_003197.1 3722759 3723499 R hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; glycerophosphodiester phosphodiesterase complement(3722759..3723499) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255076 NP_462455.1 CDS ugpC NC_003197.1 3723496 3724566 R part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate ABC transporter ATP-binding protein UgpC complement(3723496..3724566) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255077 NP_462456.1 CDS ugpE NC_003197.1 3724568 3725413 R with UgpABC is involved in uptake of glycerol-3-phosphate; glycerol-3-phosphate ABC transporter permease UdpE complement(3724568..3725413) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255078 NP_462457.1 CDS ugpA NC_003197.1 3725410 3726297 R with UgpEC is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate ABC transporter permease UdpA complement(3725410..3726297) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255079 NP_462458.1 CDS ugpB NC_003197.1 3726361 3727677 R with UgpACE is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate ABC transporter substrate-binding protein UdpB complement(3726361..3727677) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255080 NP_462459.1 CDS STM3558 NC_003197.1 3727936 3728304 R death-on-curing protein complement(3727936..3728304) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255081 NP_462460.1 CDS yefM NC_003197.1 3728301 3728528 R antitoxin YefM complement(3728301..3728528) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255082 NP_462461.1 CDS livF NC_003197.1 3728654 3729367 R with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF complement(3728654..3729367) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255083 NP_462462.1 CDS livG NC_003197.1 3729369 3730136 R Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG complement(3729369..3730136) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255084 NP_462463.1 CDS livM NC_003197.1 3730133 3731410 R Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; high-affinity branched-chain amino acid ABC transporter permease LivM complement(3730133..3731410) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255085 NP_462464.1 CDS livH NC_003197.1 3731407 3732333 R LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; high-affinity branched-chain amino acid ABC transporter permease LivH complement(3731407..3732333) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255086 NP_462465.1 CDS livK NC_003197.1 3732393 3733502 R leucine-specific binding protein precursor; LS-BP (SW:LIVK_SALTY); ABC superfamily binding protein; high-affinity branched-chain amino acid ABC transporter leucine-binding protein LivL complement(3732393..3733502) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255087 NP_462466.1 CDS yhhK NC_003197.1 3733924 3734307 D acetyltransferase 3733924..3734307 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255088 NP_462467.1 CDS STM3566 NC_003197.1 3734285 3734419 D cytoplasmic protein 3734285..3734419 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255089 NP_462468.1 CDS livJ NC_003197.1 3734502 3735599 R leu/ile/val/thr-binding protein precursor; LIVT-BP (SW:LIVJ_SALTY); ABC superfamily binding protein; high-affinity branched-chain amino acid transporter substrate-binding protein LivJ complement(3734502..3735599) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255090 NP_462469.1 CDS rpoH NC_003197.1 3735927 3736781 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase sigma factor RpoH complement(3735927..3736781) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255091 NP_462470.1 CDS ftsX NC_003197.1 3737027 3738082 R ABC transporter, membrane protein; cell division protein FtsX complement(3737027..3738082) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255092 NP_462471.1 CDS ftsE NC_003197.1 3738075 3738743 R ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; cell division ATPase FtsE complement(3738075..3738743) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255093 NP_462472.1 CDS ftsY NC_003197.1 3738746 3740221 R signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; aignal recognition particle receptor FtsY complement(3738746..3740221) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255094 NP_462473.1 CDS rsmD NC_003197.1 3740347 3740943 D catalyzes the methylation of 16S rRNA at position G966; 16S rRNA m(2)G966-methyltransferase 3740347..3740943 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255095 NP_462474.2 CDS yhhL NC_003197.1 3740933 3741202 D inner membrane protein 3740933..3741202 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255096 NP_462475.1 CDS yhhM NC_003197.1 3741224 3741595 R inner membrane protein complement(3741224..3741595) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255097 NP_462476.1 CDS yhhN NC_003197.1 3741737 3742363 D inner membrane protein 3741737..3742363 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255098 NP_462477.1 CDS zntA NC_003197.1 3742444 3744642 D P-type ATPase involved in the export of lead, cadmium, zinc and mercury; zinc/cadmium/mercury/lead-transporting ATPase 3742444..3744642 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255099 NP_462478.1 CDS tcp NC_003197.1 3744842 3746485 D methyl-accepting chemotaxis citrate transducer (citrate chemoreceptorprotein) (SW:MCPC_SALTY); methyl-accepting transmembrane citrate/phenol chemoreceptor 3744842..3746485 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255100 NP_462479.1 CDS tusA NC_003197.1 3746509 3746754 R TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; tRNA 2-thiouridine synthesizing protein TusA complement(3746509..3746754) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255101 NP_462480.1 CDS yhhQ NC_003197.1 3746924 3747589 D integral membrane protein 3746924..3747589 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255102 NP_462481.1 CDS STM3580 NC_003197.1 3747662 3748219 D inner membrane lipoprotein 3747662..3748219 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255103 NP_462482.2 CDS yhhS NC_003197.1 3748223 3749440 R major facilitator superfamily transporter complement(3748223..3749440) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255104 NP_462483.1 CDS yhhT NC_003197.1 3749572 3750621 D PerM family; PerM family permease 3749572..3750621 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255105 NP_462484.1 CDS acpT NC_003197.1 3750673 3751251 D 4'-phosphopantetheinyl transferase AcpT 3750673..3751251 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255106 NP_462485.1 CDS nikR NC_003197.1 3751343 3751744 D Inhibits transcription at high concentrations of nickel; nickel responsive regulator 3751343..3751744 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255107 NP_462486.1 CDS yhhJ NC_003197.1 3751834 3752958 R ABC transport ATP-binding protein complement(3751834..3752958) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255108 NP_462487.2 CDS yhiH NC_003197.1 3752958 3755699 R multidrug ABC transporter ATPase complement(3752958..3755699) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255109 NP_462488.1 CDS yhiI NC_003197.1 3755696 3756763 R membrane protein complement(3755696..3756763) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255110 NP_462489.1 CDS yhiN NC_003197.1 3757069 3758265 R periplasmic protein complement(3757069..3758265) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255111 NP_462490.1 CDS pitA NC_003197.1 3758496 3759992 D low-affinity phosphate transporter 3758496..3759992 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255112 NP_462491.1 CDS uspB NC_003197.1 3760132 3760467 R ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein B complement(3760132..3760467) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255113 NP_462492.1 CDS uspA NC_003197.1 3760855 3761289 D universal stress protein A 3760855..3761289 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255114 NP_462493.1 CDS yhiP NC_003197.1 3761614 3763083 D member of the POT family of peptide transporters; probable proton-dependent peptide transporter function; dipeptide/tripeptide permease B 3761614..3763083 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255115 NP_462494.1 CDS rmsJ NC_003197.1 3763175 3763933 R predicted SAM-dependent methyltransferase; rRNA small subunit methyltransferase J complement(3763175..3763933) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255116 NP_462495.1 CDS prlC NC_003197.1 3763940 3765982 R oligopeptidase A (SW:OPDA_SALTY); oligopeptidase A complement(3763940..3765982) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255117 NP_462496.1 CDS STM3595 NC_003197.1 3766164 3767435 R phosphatase complement(3766164..3767435) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255118 NP_462497.1 CDS yhiR NC_003197.1 3767646 3768488 D rRNA large subunit methyltransferase J 3767646..3768488 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255119 NP_462498.1 CDS gor NC_003197.1 3768593 3769945 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione oxidoreductase 3768593..3769945 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255120 NP_462499.1 CDS STM3598 NC_003197.1 3769992 3771035 R L-asparaginase complement(3769992..3771035) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255121 NP_462500.1 CDS STM3599 NC_003197.1 3771094 3772413 R anaerobic C4-dicarboxylate transporter complement(3771094..3772413) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255122 NP_462501.1 CDS STM3600 NC_003197.1 3772467 3773312 R sugar kinase complement(3772467..3773312) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255123 NP_462502.1 CDS STM3601 NC_003197.1 3773376 3774353 R phosphosugar isomerase complement(3773376..3774353) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255124 NP_462503.1 CDS STM3602 NC_003197.1 3774529 3775248 R GntR family regulatory protein complement(3774529..3775248) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255125 NP_462504.1 CDS treF NC_003197.1 3775574 3777223 D cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; trehalase 3775574..3777223 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255126 NP_462505.1 CDS STM3604 NC_003197.1 3777236 3778825 R inner membrane protein complement(3777236..3778825) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255127 NP_462506.1 CDS STM3605 NC_003197.1 3779106 3779462 D phage endolysin 3779106..3779462 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255128 NP_462507.1 CDS yhjB NC_003197.1 3779468 3780070 R transcriptional regulator complement(3779468..3780070) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255129 NP_462508.1 CDS yhjC NC_003197.1 3780701 3781600 D LysR family transcriptional regulator 3780701..3781600 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255130 NP_462509.1 CDS yhjD NC_003197.1 3781673 3782701 D tRNA-processing ribonuclease 3781673..3782701 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255131 NP_462510.1 CDS yhjE NC_003197.1 3783052 3784374 D MFS family transport protein 3783052..3784374 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255132 NP_462511.1 CDS yhjG NC_003197.1 3784414 3786474 R inner membrane protein complement(3784414..3786474) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255133 NP_462512.1 CDS yhjH NC_003197.1 3786584 3787351 R in Escherichia coli this protein is involved in flagellar function; diguanylate cyclase/phosphodiesterase domain-containing protein complement(3786584..3787351) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255134 NP_462513.1 CDS kdgK NC_003197.1 3787580 3788509 D ketodeoxygluconokinase 3787580..3788509 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255135 NP_462514.1 CDS yhjJ NC_003197.1 3788563 3790050 R protein YhjJ (SW:YHJJ_SALTY); Zn-dependent peptidase complement(3788563..3790050) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255136 NP_462515.1 CDS dctA NC_003197.1 3790270 3791556 R involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter complement(3790270..3791556) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255137 NP_462516.2 CDS yhjK NC_003197.1 3791714 3793720 R HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; similar to a phosphodiesterase protein from E. coli; diguanylate cyclase/phosphodiesterase complement(3791714..3793720) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255138 NP_462517.1 CDS yhjL NC_003197.1 3793894 3797436 R cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; cellulose synthase subunit BcsC complement(3793894..3797436) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255139 NP_462518.1 CDS STM3617 NC_003197.1 3797418 3798527 R catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endoglucanase complement(3797418..3798527) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255140 NP_462519.1 CDS yhjN NC_003197.1 3798531 3800831 R binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein complement(3798531..3800831) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255141 NP_462520.1 CDS bcsA NC_003197.1 3800842 3803466 R polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; cellulose synthase catalytic subunit complement(3800842..3803466) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255142 NP_462521.1 CDS bcsQ NC_003197.1 3803463 3804215 R cellulose biosynthesis protein BcsQ complement(3803463..3804215) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255143 NP_462522.1 CDS yhjR NC_003197.1 3804216 3804419 R cytoplasmic protein complement(3804216..3804419) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255144 NP_462523.1 CDS yhjS NC_003197.1 3804664 3806235 D cellulose biosynthesis protein BcsE 3804664..3806235 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255145 NP_462524.1 CDS bcsF NC_003197.1 3806232 3806423 D cellulose biosynthesis protein BcsF 3806232..3806423 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255146 NP_462525.1 CDS bcsG NC_003197.1 3806420 3808099 D cellulose biosynthesis protein BcsG 3806420..3808099 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255147 NP_462526.1 CDS STM3624A NC_003197.1 3808673 3808813 D cystathionine gamma-synthase 3808673..3808813 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255148 NP_462527.1 CDS yhjV NC_003197.1 3808931 3810229 D HAAAP family transport protein 3808931..3810229 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255149 NP_462528.1 CDS dppF NC_003197.1 3810330 3811343 R Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide ABC transporter ATP-binding subunit DppF complement(3810330..3811343) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255150 NP_462529.1 CDS dppD NC_003197.1 3811340 3812323 R DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; dipeptide ABC transporter ATP-binding subunit DppD complement(3811340..3812323) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255151 NP_462530.1 CDS dppC NC_003197.1 3812334 3813236 R dipeptide ABC transporter permease DppC complement(3812334..3813236) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255152 NP_462531.1 CDS dppB NC_003197.1 3813246 3814265 R transports peptides consisting of two or three amino acids; dipeptide ABC transporter permease DppB complement(3813246..3814265) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255153 NP_462532.1 CDS dppA NC_003197.1 3814422 3816029 R dipeptide ABC transporter substrate-binding protein DppA complement(3814422..3816029) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255154 NP_462533.1 CDS STM3631 NC_003197.1 3816585 3817910 R xanthine permease complement(3816585..3817910) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255155 NP_462534.1 CDS STM3632 NC_003197.1 3817968 3819092 R contains PQQ enzyme repeat; hypothetical protein complement(3817968..3819092) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255156 NP_462535.1 CDS STM3633 NC_003197.1 3819242 3820249 D regulatory protein 3819242..3820249 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255157 NP_462536.1 CDS yhjW NC_003197.1 3820576 3822267 R catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; phosphoethanolamine transferase complement(3820576..3822267) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255159 NP_462537.1 CDS lpfE NC_003197.1 3822485 3823012 R long polar fimbrial minor protein LpfE complement(3822485..3823012) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255160 NP_462538.1 CDS lpfD NC_003197.1 3823018 3824097 R LpfD protein (SW:LPFD_SALTY); long polar fimbrial protein LpfD complement(3823018..3824097) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255161 NP_462539.1 CDS lpfC NC_003197.1 3824115 3826643 R outer membrane usher protein LpfC (SW:LPFC_SALTY); long polar fimbrial outer membrane usher protein LfpC complement(3824115..3826643) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255162 NP_462540.1 CDS lpfB NC_003197.1 3826666 3827364 R chaperone protein LpfB (SW:LPFB_SALTY); long polar fimbrial chaperone protein LpfB complement(3826666..3827364) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255163 NP_462541.1 CDS lpfA NC_003197.1 3827449 3827985 R long polar fimbrial protein A (SW:LPFA_SALTY); long polar fimbrial protein LpfA complement(3827449..3827985) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255164 NP_462542.1 CDS yhjY NC_003197.1 3828491 3829195 R lipase complement(3828491..3829195) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255165 NP_462543.1 CDS tag NC_003197.1 3829352 3829933 D constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine; 3-methyladenine DNA glycosylase 3829352..3829933 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255166 NP_462544.1 CDS yiaC NC_003197.1 3829911 3830351 D acetyltransferase 3829911..3830351 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255167 NP_462545.1 CDS bisC NC_003197.1 3830320 3832653 R biotin sulfoxide reductase complement(3830320..3832653) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255168 NP_462546.1 CDS yiaD NC_003197.1 3832806 3833468 D outer membrane lipoprotein 3832806..3833468 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255169 NP_462547.1 CDS yiaE NC_003197.1 3833687 3834661 D Involved in the metabolism of aromatic amino acids; glyoxylate/hydroxypyruvate reductase B 3833687..3834661 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255170 NP_462548.1 CDS yiaF NC_003197.1 3834711 3835421 R outer membrane lipoprotein complement(3834711..3835421) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255171 NP_462549.1 CDS yiaG NC_003197.1 3835860 3836150 D transcriptional regulator 3835860..3836150 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255172 NP_462550.1 CDS cspA NC_003197.1 3836439 3836651 D cold shock protein CspA (SW:CSPA_SALTY); 7.4 kDa; transcriptional activator of hns; cold shock protein CspA 3836439..3836651 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255173 NP_462551.1 CDS STM3650 NC_003197.1 3836825 3837364 D hypothetical protein 3836825..3837364 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255174 NP_462552.1 CDS STM3651 NC_003197.1 3837736 3838221 R acetyltransferase complement(3837736..3838221) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255175 NP_462553.1 CDS STM3652 NC_003197.1 3838209 3838496 R cytoplasmic protein complement(3838209..3838496) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255176 NP_462554.1 CDS STM3653 NC_003197.1 3838674 3839141 R acetyltransferase complement(3838674..3839141) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255177 NP_462555.1 CDS glyS NC_003197.1 3839770 3841839 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycine--tRNA ligase subunit beta complement(3839770..3841839) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255179 NP_462556.1 CDS glyQ NC_003197.1 3841849 3842760 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycine--tRNA ligase subunit alpha complement(3841849..3842760) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255180 NP_462557.1 CDS STM3657 NC_003197.1 3842899 3843201 R lipoprotein complement(3842899..3843201) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255181 NP_462558.1 CDS yiaH NC_003197.1 3843367 3844362 D inner membrane protein 3843367..3844362 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255182 NP_462559.1 CDS yiaB NC_003197.1 3844385 3844738 R inner membrane protein complement(3844385..3844738) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255183 NP_462560.1 CDS xylB NC_003197.1 3844913 3846367 R xylulokinase complement(3844913..3846367) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255184 NP_462561.1 CDS xylA NC_003197.1 3846467 3847789 R catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase complement(3846467..3847789) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255185 NP_462562.1 CDS xylR NC_003197.1 3848152 3849330 D xylose operon regulatory protein 3848152..3849330 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255186 NP_462563.1 CDS STM3663 NC_003197.1 3849391 3850215 R hypothetical protein complement(3849391..3850215) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255187 NP_462564.1 CDS malS NC_003197.1 3850531 3852558 D periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds; alpha-amylase 3850531..3852558 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255188 NP_462565.1 CDS avtA NC_003197.1 3852732 3853982 D transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase 3852732..3853982 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255189 NP_462566.1 CDS ysaA NC_003197.1 3854019 3854492 R oxidoreductase complement(3854019..3854492) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255190 NP_462567.1 CDS yiaJ NC_003197.1 3854609 3855409 R IclR family transcriptional repressor complement(3854609..3855409) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255191 NP_462568.1 CDS yiaK NC_003197.1 3855639 3856637 D NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; 2,3-diketo-L-gulonate reductase 3855639..3856637 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255192 NP_462569.1 CDS yiaL NC_003197.1 3856649 3857113 D cytoplasmic protein 3856649..3857113 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255193 NP_462570.1 CDS STM3670 NC_003197.1 3857137 3858069 D hypothetical protein 3857137..3858069 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255194 NP_462571.1 CDS yiaM NC_003197.1 3858208 3858681 D membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO; L-dehydroascorbate TRAP transporter small permease 3858208..3858681 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255195 NP_462572.1 CDS yiaN NC_003197.1 3858684 3859961 D L-dehydroascorbate TRAP transporter large permease 3858684..3859961 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255196 NP_462573.1 CDS yiaO NC_003197.1 3859973 3860959 D periplasmic dicarboxylate-binding protein 3859973..3860959 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255197 NP_462574.1 CDS lyxK NC_003197.1 3860963 3862459 D cryptic L-xylulose kinase 3860963..3862459 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255198 NP_462575.1 CDS sgbH NC_003197.1 3862456 3863118 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate; 3-keto-L-gulonate-6-phosphate decarboxylase 3862456..3863118 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255199 NP_462576.1 CDS sgbU NC_003197.1 3863111 3863971 D L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; 3-hexulose-6-phosphate isomerase 3863111..3863971 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255200 NP_462577.1 CDS sgbE NC_003197.1 3863965 3864660 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 3863965..3864660 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255201 NP_462578.1 CDS STM3678 NC_003197.1 3864821 3865636 R regulatory protein complement(3864821..3865636) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255202 NP_462579.1 CDS STM3679 NC_003197.1 3865900 3867855 D cytoplasmic protein 3865900..3867855 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255203 NP_462580.1 CDS aldB NC_003197.1 3867973 3869511 R aldehyde dehydrogenase B complement(3867973..3869511) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255204 NP_462581.1 CDS STM3681 NC_003197.1 3869680 3870561 D transcriptional regulator 3869680..3870561 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255205 NP_462582.1 CDS selB NC_003197.1 3870846 3872696 R selenocysteinyl-tRNA-specific translation factor complement(3870846..3872696) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255206 NP_462583.1 CDS selA NC_003197.1 3872693 3874084 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; L-seryl-tRNA(Sec) selenium transferase complement(3872693..3874084) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255207 NP_462584.1 CDS yibF NC_003197.1 3874183 3874791 R glutathione S-transferase complement(3874183..3874791) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255208 NP_462585.1 CDS mtlA NC_003197.1 3875267 3877183 D PTS system mannitol-specific transporter subunit IIABC 3875267..3877183 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255209 NP_462586.1 CDS mtlD NC_003197.1 3877404 3878552 D mannitol-1-phosphate 5-dehydrogenase 3877404..3878552 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255210 NP_462587.1 CDS mtlR NC_003197.1 3878549 3879139 D Acts as a repressor of the mtlAD operon; mannitol repressor protein 3878549..3879139 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255211 NP_462588.1 CDS STM3688 NC_003197.1 3879149 3879358 R hypothetical protein complement(3879149..3879358) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255212 NP_462589.1 CDS yibL NC_003197.1 3879649 3880011 D cytoplasmic protein 3879649..3880011 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255213 NP_462590.1 CDS STM3690 NC_003197.1 3880501 3881184 D inner membrane lipoprotein 3880501..3881184 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255214 NP_462591.1 CDS STM3691 NC_003197.1 3881228 3885613 D trimeric autotransporter adhesin 3881228..3885613 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255215 NP_462592.1 CDS lldP NC_003197.1 3885912 3887567 D L-lactate permease 3885912..3887567 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255216 NP_462593.1 CDS lldR NC_003197.1 3887564 3888340 D represses the lctPRD operon; DNA-binding transcriptional repressor LldR 3887564..3888340 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255217 NP_462594.1 CDS lldD NC_003197.1 3888337 3889527 D flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 3888337..3889527 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255218 NP_462595.1 CDS yibK NC_003197.1 3889591 3890064 D member of the SPOUT superfamily of RNA methyltransferases; no methyltransferase activity observed with certain tRNA substrates; tRNA (cytidine(34)-2'-O)-methyltransferase 3889591..3890064 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255219 NP_462596.1 CDS STM3696 NC_003197.1 3890132 3891136 R transcriptional regulator complement(3890132..3891136) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255220 NP_462597.1 CDS STM3697 NC_003197.1 3891455 3892651 D mandelate racemase 3891455..3892651 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255221 NP_462598.1 CDS STM3698 NC_003197.1 3892725 3894035 D permease 3892725..3894035 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255222 NP_462599.1 CDS cysE NC_003197.1 3894118 3894939 R catalyzes the O-acetylation of serine; serine acetyltransferase complement(3894118..3894939) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255223 NP_462600.1 CDS gpsA NC_003197.1 3895017 3896036 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; glycerol-3-phosphate dehydrogenase complement(3895017..3896036) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255224 NP_462601.1 CDS secB NC_003197.1 3896036 3896503 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; protein-export protein SecB complement(3896036..3896503) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255225 NP_462602.1 CDS grxC NC_003197.1 3896547 3896798 R glutaredoxin 3 complement(3896547..3896798) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255226 NP_462603.1 CDS yibN NC_003197.1 3896885 3897316 R rhodanese-like sulfurtransferase complement(3896885..3897316) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255227 NP_462604.1 CDS pmgI NC_003197.1 3897564 3899108 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 3897564..3899108 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255228 NP_462605.1 CDS yibP NC_003197.1 3899118 3900401 D membrane protein 3899118..3900401 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255229 NP_462606.1 CDS yigQ NC_003197.1 3900405 3901367 D periplasmic protein 3900405..3901367 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255230 NP_462607.1 CDS yibD NC_003197.1 3901354 3902388 R glycosyl transferase complement(3901354..3902388) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255231 NP_462608.1 CDS tdh NC_003197.1 3902882 3903907 R converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase complement(3902882..3903907) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255232 NP_462609.1 CDS kbl NC_003197.1 3903917 3905113 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase complement(3903917..3905113) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255233 NP_462610.1 CDS rfaD NC_003197.1 3905316 3906248 D catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-manno-heptose-6-epimerase 3905316..3906248 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255234 NP_462611.1 CDS rfaF NC_003197.1 3906251 3907297 D catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose--LPS heptosyltransferase 3906251..3907297 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255235 NP_462612.1 CDS rfaC NC_003197.1 3907297 3908250 D lipopolysaccharide heptosyltransferase-1 (SW:RFAC_SALTY); ADP-heptose--LPS heptosyltransferase 3907297..3908250 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255236 NP_462613.1 CDS rfaL NC_003197.1 3908290 3909504 D O-antigen ligase (SW:RFAL_SALTY); O-antigen ligase 3908290..3909504 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255237 NP_462614.1 CDS rfaK NC_003197.1 3909561 3910706 R lipopolysaccharide 1,2-N-acetylglucosaminetransferase (SW:RFAK_SALTY); lipopolysaccharide core biosynthetic protein; lipopolysaccharide 1,2-N-acetylglucosaminetransferase complement(3909561..3910706) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255238 NP_462615.1 CDS rfaZ NC_003197.1 3910807 3911616 R lipopolysaccharide core biosynthetic protein RfaZ (SW:RFAZ_SALTY); lipopolysaccharide core biosynthesis protein RfaZ complement(3910807..3911616) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255239 NP_462616.1 CDS rfaY NC_003197.1 3911766 3912464 R lipopolysaccharide core biosynthesis protein RfaY (SW:RFAY_SALTY); modification of heptose region of the core; lipopolysaccharide core heptose(II) kinase RfaY complement(3911766..3912464) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255240 NP_462617.1 CDS rfaJ NC_003197.1 3912487 3913497 R UDP-D-glucose/galactosyl; lipopolysaccharide 1,2-glucosyltransferase (SW:RFAJ_SALTY); lipopolysaccharide 1,2-glucosyltransferase complement(3912487..3913497) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255241 NP_462618.1 CDS rfaI NC_003197.1 3913515 3914528 R UDP-D-galactose/glucosyl; lipopolysaccharide 1,3-galactosyltransferase (SW:RFAI_SALTY); lipopolysaccharide 1,3-galactosyltransferase complement(3913515..3914528) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255242 NP_462619.1 CDS rfaB NC_003197.1 3914534 3915613 R UDP-D-galactose/(glucosyl; lipopolysaccharide 1,6-galactosyltransferase (SW:RFAB_SALTY); lipopolysaccharide 1,6-galactosyltransferase complement(3914534..3915613) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255243 NP_462620.1 CDS STM3720 NC_003197.1 3915683 3915916 R hypothetical 9.0 kDa protein in rfaB-rfaP intergenic region (SW:YIBR_SALTY); hypothetical protein complement(3915683..3915916) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255244 NP_462621.1 CDS rfaP NC_003197.1 3915948 3916745 R lipopolysaccharide core biosynthetic protein RfaP (SW:RFAP_SALTY); phosphorylation of core heptose; lipopolysaccharide core heptose(I) kinase RfaP complement(3915948..3916745) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255245 NP_462622.1 CDS rfaG NC_003197.1 3916738 3917862 R glucosyltransferase I complement(3916738..3917862) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255246 NP_462623.1 CDS rfaQ NC_003197.1 3917859 3918893 R lipopolysaccharide core biosynthesis protein complement(3917859..3918893) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255247 NP_462624.1 CDS kdtA NC_003197.1 3919338 3920615 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 3919338..3920615 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255248 NP_462625.1 CDS coaD NC_003197.1 3920624 3921103 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 3920624..3921103 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255249 NP_462626.1 CDS mutM NC_003197.1 3921131 3921940 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(3921131..3921940) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255250 NP_462627.1 CDS rpmG NC_003197.1 3922038 3922205 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(3922038..3922205) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255251 NP_462628.1 CDS rpmB NC_003197.1 3922226 3922462 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(3922226..3922462) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255252 NP_462629.1 CDS STM3729 NC_003197.1 3922680 3923345 R hypothetical protein complement(3922680..3923345) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255253 NP_462630.2 CDS dfp NC_003197.1 3923521 3924741 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 3923521..3924741 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255254 NP_462631.1 CDS dut NC_003197.1 3924722 3925177 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 3924722..3925177 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255255 NP_462632.1 CDS slmA NC_003197.1 3925285 3925881 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein SlmA 3925285..3925881 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255256 NP_462633.1 CDS pyrE NC_003197.1 3925959 3926600 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(3925959..3926600) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255257 NP_462634.1 CDS rph NC_003197.1 3926679 3927395 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(3926679..3927395) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255258 NP_462635.1 CDS STM3735 NC_003197.1 3927521 3928384 D hypothetical protein 3927521..3928384 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255259 NP_462636.1 CDS STM3736 NC_003197.1 3928434 3929336 R LysR family transcriptional regulator complement(3928434..3929336) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255260 NP_462637.1 CDS STM3737 NC_003197.1 3929410 3930291 D Zn-dependent hydrolase 3929410..3930291 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255261 NP_462638.1 CDS yigC NC_003197.1 3930542 3931159 D inner membrane protein 3930542..3931159 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255262 NP_462639.1 CDS ligB NC_003197.1 3931156 3932841 R this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; DNA ligase LigB complement(3931156..3932841) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255263 NP_462640.1 CDS gmk NC_003197.1 3933098 3933721 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 3933098..3933721 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255264 NP_462641.1 CDS rpoZ NC_003197.1 3933776 3934051 D promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3933776..3934051 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255265 NP_462642.1 CDS spoT NC_003197.1 3934070 3936181 D bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3934070..3936181 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255266 NP_462643.1 CDS spoU NC_003197.1 3936186 3936875 D specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 3936186..3936875 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255267 NP_462644.1 CDS recG NC_003197.1 3936881 3938962 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 3936881..3938962 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255268 NP_462645.1 CDS STM3745 NC_003197.1 3938965 3939816 R cytoplasmic protein complement(3938965..3939816) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255269 NP_462646.1 CDS gltS NC_003197.1 3939819 3941024 R GltS family glutamate transport protein complement(3939819..3941024) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255270 NP_462647.1 CDS yicE NC_003197.1 3941252 3942643 D NCS2 family purine/xanthine transport protein 3941252..3942643 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255271 NP_462648.1 CDS yicH NC_003197.1 3942764 3944473 D inner membrane protein 3942764..3944473 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255272 NP_462649.1 CDS yicI NC_003197.1 3944576 3946894 R catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides; alpha-xylosidase complement(3944576..3946894) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255273 NP_462650.1 CDS yicJ NC_003197.1 3946906 3948288 R may be involved in the transport of galactosides-pentoses-hexuronides; GPH family transport protein complement(3946906..3948288) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255274 NP_462651.1 CDS STM3752 NC_003197.1 3948987 3949331 R cytoplasmic protein complement(3948987..3949331) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255276 NP_462652.1 CDS sugR NC_003197.1 3950009 3951199 D ATP-binding protein 3950009..3951199 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255277 NP_462653.1 CDS STM3754 NC_003197.1 3951196 3951546 D cytoplasmic protein 3951196..3951546 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255278 NP_462654.1 CDS rhuM NC_003197.1 3951733 3952770 D RhuM; cytoplasmic protein 3951733..3952770 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255279 NP_462655.1 CDS rmbA NC_003197.1 3954069 3954686 D RmbA; cytoplasmic protein 3954069..3954686 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255280 NP_462656.1 CDS misL NC_003197.1 3954761 3957628 D autotransported protein 3954761..3957628 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255281 NP_462657.1 CDS fidL NC_003197.1 3957723 3958187 R FidL; inner membrane protein complement(3957723..3958187) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255282 NP_462658.3 CDS marT NC_003197.1 3958198 3958962 R transcriptional regulator complement(3958198..3958962) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255283 NP_462660.1 CDS STM3761 NC_003197.1 3959839 3960519 D inner membrane protein 3959839..3960519 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255285 NP_462661.1 CDS cigR NC_003197.1 3960748 3961227 R CigR; inner membrane protein complement(3960748..3961227) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255286 NP_462662.1 CDS mgtB NC_003197.1 3961542 3964268 R Mg(2+) transport ATPase, P-type 2 (SW:ATMB_SALTY); cotranscribed with mgtC; magnesium-transporting ATPase complement(3961542..3964268) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255287 NP_462663.1 CDS mgtC NC_003197.1 3964488 3965183 R Mg(2+) transport ATPase protein C (SW:ATMC_SALTY); reqired for intracmacrophage survival and growth in low calcium; cotranscribed with mgtB and transcriptionally controlled by PhoP/PhoQ system; protein MgtC complement(3964488..3965183) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255288 NP_462664.1 CDS yicL NC_003197.1 3965692 3966594 D inner membrane transporter 3965692..3966594 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255289 NP_462665.1 CDS STM3766 NC_003197.1 3966637 3967578 R cytoplasmic protein complement(3966637..3967578) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255290 NP_462666.1 CDS STM3767 NC_003197.1 3967814 3968557 R cytoplasmic protein complement(3967814..3968557) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255291 NP_462667.1 CDS STM3768 NC_003197.1 3968544 3969653 R L-seryl-tRNA selenium transferase; selenocysteine synthase complement(3968544..3969653) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255292 NP_462668.2 CDS STM3769.S NC_003197.1 3969657 3970514 R PTS system mannose-specific transporter subunit IID complement(3969657..3970514) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255293 NP_462669.1 CDS STM3770 NC_003197.1 3970514 3971263 R PTS system mannose-specific transporter subunit IIC complement(3970514..3971263) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255294 NP_462670.1 CDS STM3771 NC_003197.1 3971409 3971894 R PTS system mannose-specific transporter subunit IIB complement(3971409..3971894) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255295 NP_462671.1 CDS STM3772 NC_003197.1 3971905 3972330 R PTS system mannose-specific transporter subunit IIA complement(3971905..3972330) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255296 NP_462672.1 CDS STM3773 NC_003197.1 3972549 3975347 R NtrC family transcriptional regulator complement(3972549..3975347) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255297 NP_462673.1 CDS STM3774 NC_003197.1 3975544 3975837 D hypothetical protein 3975544..3975837 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255298 NP_462674.1 CDS STM3775 NC_003197.1 3975943 3977325 D glycosyl hydrolase family protein 3975943..3977325 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255299 NP_462675.1 CDS nepI NC_003197.1 3977385 3978578 R experimental results in Escherichia coli suggest that this gene encodes an inosine export protein; member of major facilitator superfamily; MFS; purine ribonucleoside efflux pump NepI complement(3977385..3978578) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255300 NP_462676.1 CDS STM3777 NC_003197.1 3978794 3979153 D cytoplasmic protein 3978794..3979153 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255301 NP_462677.1 CDS STM3778 NC_003197.1 3979137 3979460 D helix-turn-helix; DNA-binding protein 3979137..3979460 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255302 NP_462678.1 CDS STM3779 NC_003197.1 3979551 3979820 R PTS system phosphocarrier protein HPr complement(3979551..3979820) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255303 NP_462679.1 CDS gatY NC_003197.1 3979830 3980690 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase complement(3979830..3980690) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255304 NP_462680.1 CDS STM3781 NC_003197.1 3980753 3982237 R sugar kinase complement(3980753..3982237) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255305 NP_462681.1 CDS STM3782 NC_003197.1 3982230 3983588 R PTS system mannitol/fructose-specific transporter subunit IIC complement(3982230..3983588) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255306 NP_462682.1 CDS STM3783 NC_003197.1 3983664 3983951 R PTS system mannitol/fructose-specific transporter subunit IIB complement(3983664..3983951) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255307 NP_462683.1 CDS STM3784 NC_003197.1 3983948 3984421 R PTS system mannitol/fructose-specific transporter subunit IIA complement(3983948..3984421) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255308 NP_462684.1 CDS STM3785 NC_003197.1 3984439 3985182 R GntR family regulatory protein complement(3984439..3985182) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255309 NP_462685.1 CDS yicN NC_003197.1 3985535 3985987 R inner membrane protein complement(3985535..3985987) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255310 NP_462686.1 CDS uhpT NC_003197.1 3986180 3987571 R cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; hexose phosphate transport protein complement(3986180..3987571) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255311 NP_462687.1 CDS uhpC NC_003197.1 3987714 3989042 R membrane protein regulates uhpT expression; regulatory protein UhpC complement(3987714..3989042) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255312 NP_462688.1 CDS uhpB NC_003197.1 3989052 3990554 R Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; sensor protein UhpB complement(3989052..3990554) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255313 NP_462689.1 CDS uhpA NC_003197.1 3990554 3991144 R response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; transcriptional regulator UhpA complement(3990554..3991144) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255314 NP_462690.1 CDS STM3791 NC_003197.1 3991219 3992232 R cytoplasmic protein complement(3991219..3992232) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255315 NP_462691.1 CDS STM3792 NC_003197.1 3992244 3993560 R L-fucose permease complement(3992244..3993560) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255316 NP_462692.1 CDS STM3793 NC_003197.1 3993591 3994511 R sugar kinase complement(3993591..3994511) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255317 NP_462693.1 CDS STM3794 NC_003197.1 3994836 3995621 D DeoR family regulatory protein 3994836..3995621 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255318 NP_462694.1 CDS ilvN NC_003197.1 3995623 3995913 R with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; acetolactate synthase 1 regulatory subunit complement(3995623..3995913) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255319 NP_462695.1 CDS ilvB NC_003197.1 3995917 3997605 R catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase catalytic subunit complement(3995917..3997605) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255320 NP_462696.1 CDS ivbL NC_003197.1 3997712 3997810 R ilvB operon leader peptide complement(3997712..3997810) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255321 NP_462698.2 CDS STM3796A.S NC_003197.1 3998653 3999486 D integral membrane protein 3998653..3999486 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255324 NP_462699.1 CDS emrD NC_003197.1 3999689 4000873 D multidrug efflux protein involved in adaptation to low energy shock; MFS family multidrug tranport protein 3999689..4000873 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255325 NP_462700.1 CDS STM3799 NC_003197.1 4000800 4001885 R periplasmic protein complement(4000800..4001885) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255326 NP_462701.1 CDS dsdC NC_003197.1 4001949 4002872 R regulates the synthesis and expression of the dsdXA operon and dadA gene; LysR family transcriptional activator complement(4001949..4002872) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255327 NP_462702.1 CDS dsdX NC_003197.1 4003098 4004435 D member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX 4003098..4004435 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255328 NP_462703.1 CDS dsdA NC_003197.1 4004453 4005775 D catalyzes the formation of pyruvate from serine; D-serine dehydratase 4004453..4005775 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255329 NP_462704.1 CDS yidF NC_003197.1 4005857 4006387 R cytoplasmic protein complement(4005857..4006387) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255330 NP_462705.1 CDS yidG NC_003197.1 4006384 4006746 R inner membrane protein complement(4006384..4006746) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255331 NP_462706.1 CDS yidH NC_003197.1 4006736 4007083 R inner membrane protein complement(4006736..4007083) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255332 NP_462707.1 CDS yidE NC_003197.1 4007527 4009188 R transport protein YidE complement(4007527..4009188) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255334 NP_462708.3 CDS ibpB NC_003197.1 4009378 4009806 R 16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent; heat shock protein IbpB complement(4009378..4009806) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255335 NP_462709.3 CDS ibpA NC_003197.1 4009916 4010329 R with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; heat shock protein IbpA complement(4009916..4010329) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255336 NP_462710.1 CDS yidQ NC_003197.1 4010636 4010971 D outer membrane lipoprotein 4010636..4010971 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255337 NP_462711.1 CDS yidR NC_003197.1 4010973 4012199 R cytoplasmic protein complement(4010973..4012199) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255338 NP_462712.1 CDS ccmH NC_003197.1 4012321 4013364 R heme lyase subunit complement(4012321..4013364) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255339 NP_462713.1 CDS ccmG NC_003197.1 4013361 4013918 R Thiol:disulfide interchange protein DsbE; cytochrome c biogenesis protein CcmG complement(4013361..4013918) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255340 NP_462714.1 CDS ccmF NC_003197.1 4013915 4015846 R cytochrome c-type biogenesis protein CcmF complement(4013915..4015846) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255341 NP_462715.1 CDS ccmE NC_003197.1 4015843 4016322 R cytochrome c-type biogenesis protein CcmE complement(4015843..4016322) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255342 NP_462716.1 CDS ccmD NC_003197.1 4016319 4016531 R heme exporter protein CcmD complement(4016319..4016531) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255343 NP_462717.1 CDS ccmC NC_003197.1 4016528 4017265 R heme exporter protein CcmC complement(4016528..4017265) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255344 NP_462718.1 CDS ccmB NC_003197.1 4017317 4017976 R heme exporter protein CcmC complement(4017317..4017976) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255345 NP_462719.1 CDS ccmA NC_003197.1 4017973 4018590 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis ATP-binding export protein CcmA complement(4017973..4018590) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255346 NP_462720.1 CDS STM3820 NC_003197.1 4018596 4019996 R cytochrome c peroxidase complement(4018596..4019996) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255347 NP_462721.1 CDS torD NC_003197.1 4020186 4020818 R TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD complement(4020186..4020818) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255348 NP_462722.1 CDS torA NC_003197.1 4020811 4023363 R trimethylamine N-oxide reductase complement(4020811..4023363) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255349 NP_462723.1 CDS torC NC_003197.1 4023353 4024537 R trimethylamine N-oxide reductase cytochrome c-like subunit complement(4023353..4024537) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255350 NP_462724.1 CDS torR NC_003197.1 4024667 4025359 D response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; response regulator TorR 4024667..4025359 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255351 NP_462725.1 CDS torT NC_003197.1 4025332 4026372 R periplasmic sensory protein associated with the TorRS two-component regulatory system; periplasmic sensor TorT complement(4025332..4026372) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255352 NP_462726.1 CDS torS NC_003197.1 4026452 4029187 D Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; sensory kinase TorS 4026452..4029187 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255353 NP_462727.1 CDS dgoT NC_003197.1 4029213 4030550 R MFS family D-galactonate transport protein complement(4029213..4030550) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255354 NP_462728.1 CDS dgoA NC_003197.1 4030635 4031783 R galactonate dehydratase complement(4030635..4031783) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255355 NP_462729.1 CDS dgoK NC_003197.1 4032380 4033258 R 2-oxo-3-deoxygalactonate kinase complement(4032380..4033258) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255356 NP_462730.1 CDS dgoR NC_003197.1 4033255 4033944 R galactonate operon transcriptional repressor complement(4033255..4033944) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255357 NP_462731.1 CDS yidA NC_003197.1 4034205 4035050 R YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins; sugar phosphatase complement(4034205..4035050) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255358 NP_462732.1 CDS STM3832 NC_003197.1 4035356 4036618 D permease 4035356..4036618 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255359 NP_462733.1 CDS STM3833 NC_003197.1 4036632 4037825 D mandelate racemase 4036632..4037825 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255360 NP_462734.1 CDS STM3834 NC_003197.1 4037940 4038836 D LysR family transcriptional regulator 4037940..4038836 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255361 NP_462735.1 CDS gyrB NC_003197.1 4038855 4041269 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(4038855..4041269) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255362 NP_462736.1 CDS recF NC_003197.1 4041298 4042371 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; DNA replication/repair protein RecF complement(4041298..4042371) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255363 NP_462737.1 CDS dnaN NC_003197.1 4042519 4043619 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(4042519..4043619) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255364 NP_462738.1 CDS dnaA NC_003197.1 4043624 4045024 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein DnaA complement(4043624..4045024) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255365 NP_462739.1 CDS rpmH NC_003197.1 4045685 4045825 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4045685..4045825 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255366 NP_462740.1 CDS rnpA NC_003197.1 4045842 4046201 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P protein 4045842..4046201 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255367 NP_462741.1 CDS STM3841 NC_003197.1 4046165 4046422 D membrane protein insertion efficiency factor 4046165..4046422 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255368 NP_462742.1 CDS yidC NC_003197.1 4046425 4048071 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; membrane protein insertase YidC 4046425..4048071 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255369 NP_462743.1 CDS mnmE NC_003197.1 4048213 4049577 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase mnmE 4048213..4049577 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255370 NP_462744.1 CDS STM3845 NC_003197.1 4051378 4052340 D inner membrane protein 4051378..4052340 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255372 NP_462745.2 CDS STM3846.s NC_003197.1 4052340 4053275 D RNA-dependent DNA polymerase; reverse transcriptase 4052340..4053275 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255373 NP_462746.1 CDS yidY NC_003197.1 4054077 4055264 D Confers resistance to chloramphenicol; multidrug resistance protein MdtL 4054077..4055264 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255374 NP_462747.1 CDS yidZ NC_003197.1 4055233 4056192 D Involved in anaerobic NO protection; HTH-type transcriptional regulator YidZ 4055233..4056192 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255375 NP_462748.1 CDS yieE NC_003197.1 4056350 4057105 D cytoplasmic protein 4056350..4057105 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255376 NP_462749.2 CDS yieF NC_003197.1 4057123 4057689 D oxidoreductase 4057123..4057689 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255377 NP_462750.2 CDS yieG NC_003197.1 4057734 4059071 R xanthine/uracil permease complement(4057734..4059071) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255378 NP_462751.1 CDS yieH NC_003197.1 4059240 4059905 D YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily; bifunctional phosphoenolpyruvate/6-phosphogluconate phosphatase 4059240..4059905 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255379 NP_462752.1 CDS phoU NC_003197.1 4060000 4060725 R regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU complement(4060000..4060725) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255380 NP_462753.1 CDS pstB NC_003197.1 4060740 4061513 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein PstB complement(4060740..4061513) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255381 NP_462754.1 CDS pstA NC_003197.1 4061600 4062490 R Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate ABC transporter permease subunit PtsA complement(4061600..4062490) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255382 NP_462755.1 CDS pstC NC_003197.1 4062490 4063449 R part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate ABC transporter permease PstC complement(4062490..4063449) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255383 NP_462756.1 CDS pstS NC_003197.1 4063585 4064625 R phosphate ABC transporter substrate-binding protein PstS complement(4063585..4064625) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255384 NP_462757.1 CDS STM3858 NC_003197.1 4064792 4066165 R PTS system fructose-specific transporter subunit IIBC complement(4064792..4066165) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255385 NP_462758.1 CDS aroE NC_003197.1 4066214 4067032 R catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(4066214..4067032) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255386 NP_462759.1 CDS STM3860 NC_003197.1 4067127 4068884 D dipeptide/oligopeptide/nickel ABC transporter substrate-binding protein 4067127..4068884 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255387 NP_462760.1 CDS glmS NC_003197.1 4069035 4070864 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(4069035..4070864) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255388 NP_462761.1 CDS glmU NC_003197.1 4071053 4072423 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(4071053..4072423) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255389 NP_462762.1 CDS STM3863 NC_003197.1 4072743 4073441 R permease complement(4072743..4073441) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255390 NP_462763.1 CDS atpC NC_003197.1 4073671 4074090 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(4073671..4074090) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255391 NP_462764.1 CDS atpD NC_003197.1 4074111 4075493 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(4074111..4075493) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255392 NP_462765.1 CDS atpG NC_003197.1 4075520 4076383 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(4075520..4076383) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255393 NP_462766.1 CDS atpA NC_003197.1 4076434 4077975 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(4076434..4077975) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255394 NP_462767.1 CDS atpH NC_003197.1 4077988 4078521 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(4077988..4078521) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255395 NP_462768.1 CDS atpF NC_003197.1 4078536 4079006 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(4078536..4079006) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255396 NP_462769.1 CDS atpE NC_003197.1 4079066 4079305 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(4079066..4079305) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255397 NP_462770.1 CDS atpB NC_003197.1 4079352 4080167 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(4079352..4080167) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255398 NP_462771.1 CDS atpI NC_003197.1 4080176 4080556 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I complement(4080176..4080556) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255399 NP_462772.3 CDS gidB NC_003197.1 4081172 4081795 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; rRNA small subunit methyltransferase complement(4081172..4081795) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255400 NP_462773.1 CDS gidA NC_003197.1 4081898 4083787 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(4081898..4083787) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255401 NP_462774.1 CDS mioC NC_003197.1 4084166 4084609 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; FMN-binding protein complement(4084166..4084609) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255402 NP_462775.1 CDS asnC NC_003197.1 4084699 4085157 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(4084699..4085157) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255403 NP_462776.1 CDS asnA NC_003197.1 4085308 4086300 D catalyzes the formation of asparagine from aspartate and ammonia; aspartate--ammonia ligase 4085308..4086300 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255404 NP_462777.2 CDS viaA NC_003197.1 4086305 4087756 R contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; protein ViaA complement(4086305..4087756) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255405 NP_462778.1 CDS yieN NC_003197.1 4087750 4089246 R interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase; ATPase RavA complement(4087750..4089246) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255406 NP_462779.1 CDS trkD NC_003197.1 4089594 4091462 D Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transport protein Kup 4089594..4091462 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255407 NP_462780.1 CDS rbsD NC_003197.1 4091659 4092078 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 4091659..4092078 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255408 NP_462781.1 CDS rbsA NC_003197.1 4092086 4093591 D with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose ABC transporter ATP-binding protein RbsA 4092086..4093591 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255409 NP_462782.1 CDS rbsC NC_003197.1 4093597 4094562 D functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease RbsC 4093597..4094562 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255410 NP_462783.1 CDS rbsB NC_003197.1 4094587 4095477 D periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose ABC transporter substrate-binding protein RbsB 4094587..4095477 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255411 NP_462784.1 CDS rbsK NC_003197.1 4095611 4096540 D catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 4095611..4096540 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255412 NP_462785.1 CDS rbsR NC_003197.1 4096544 4097542 D DNA-binding transcriptional repressor of ribose metabolism; transcriptional repressor RbsR 4096544..4097542 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255413 NP_462786.1 CDS yieO NC_003197.1 4097508 4098935 R MFS family tranport protein complement(4097508..4098935) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255414 NP_462787.1 CDS yieP NC_003197.1 4098947 4099651 R GntR family; GntR family regulatory protein complement(4098947..4099651) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255415 NP_462788.2 CDS yifA NC_003197.1 4105545 4106381 R Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; HTH-type transcriptional regulator HdfR complement(4105545..4106381) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255423 NP_462789.1 CDS STM3898 NC_003197.1 4106500 4106838 D LysR type regulator; with pssR; hypothetical protein 4106500..4106838 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255424 NP_462790.1 CDS yifB NC_003197.1 4106863 4108383 R among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; ATP-dependent protease complement(4106863..4108383) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255425 NP_462791.1 CDS ilvL NC_003197.1 4108735 4108833 D ilvGmedA operon leader peptide; attenuator peptide (SW:LPID_ECOLI); ilvG operon leader peptide 4108735..4108833 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255426 NP_462792.1 CDS ilvG NC_003197.1 4108973 4110619 D catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 4108973..4110619 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255427 NP_462793.2 CDS ilvM NC_003197.1 4110616 4110879 D acetolactate synthase 2 regulatory subunit 4110616..4110879 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255428 NP_462794.1 CDS ilvE NC_003197.1 4110897 4111826 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4110897..4111826 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255429 NP_462795.1 CDS ilvD NC_003197.1 4111987 4113837 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4111987..4113837 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255430 NP_462796.1 CDS ilvA NC_003197.1 4113840 4115384 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase IlvA 4113840..4115384 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255431 NP_462797.1 CDS STM3906 NC_003197.1 4115668 4115985 D cytoplasmic protein 4115668..4115985 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255432 NP_462798.1 CDS STM3907 NC_003197.1 4115982 4116323 D cytoplasmic protein 4115982..4116323 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255433 NP_462799.1 CDS ilvY NC_003197.1 4116326 4117213 R participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; HTH-type transcriptional regulator IlvY complement(4116326..4117213) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255434 NP_462800.1 CDS ilvC NC_003197.1 4117377 4118852 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 4117377..4118852 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255435 NP_462801.1 CDS ppiC NC_003197.1 4118944 4119225 R peptidyl-prolyl cis-trans isomerase C complement(4118944..4119225) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255436 NP_462802.1 CDS STM3911 NC_003197.1 4119514 4119663 D inner membrane protein 4119514..4119663 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255437 NP_462803.1 CDS rep NC_003197.1 4119763 4121787 D single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; ATP-dependent DNA helicase Rep 4119763..4121787 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255438 NP_462804.1 CDS gppA NC_003197.1 4121827 4123308 R catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase complement(4121827..4123308) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255439 NP_462805.1 CDS rhlB NC_003197.1 4123427 4124692 R enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB complement(4123427..4124692) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255440 NP_462806.1 CDS trxA NC_003197.1 4124836 4125165 D thioredoxin 1; TRX1; TRX (SW:THIO_ECOLI); redox factor; thioredoxin 4124836..4125165 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255441 NP_462807.1 CDS rho NC_003197.1 4125584 4126843 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 4125584..4126843 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255443 NP_462808.1 CDS rfe NC_003197.1 4127073 4128176 D undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase 4127073..4128176 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255444 NP_462809.1 CDS wzzE NC_003197.1 4128188 4129234 D Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; lipopolysaccharide biosynthesis protein WzzE 4128188..4129234 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255445 NP_462810.1 CDS wecB NC_003197.1 4129290 4130420 D UDP-N-acetyl glucosamine 2-epimerase 4129290..4130420 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255446 NP_462811.1 CDS wecC NC_003197.1 4130417 4131679 D catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase 4130417..4131679 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255447 NP_462812.1 CDS rffG NC_003197.1 4131679 4132746 D dTDP-glucose 4,6-dehydratase 4131679..4132746 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255448 NP_462813.1 CDS rffH NC_003197.1 4132779 4133003 D glucose-1-phosphate thymidylyltransferase 4132779..4133003 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255449 NP_462814.2 CDS wecD NC_003197.1 4132981 4133658 D TDP-fucosamine acetyltransferase 4132981..4133658 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255450 NP_462815.1 CDS wecE NC_003197.1 4133663 4134793 D catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4133663..4134793 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255451 NP_462816.1 CDS wzxE NC_003197.1 4134795 4136045 D O-antigen translocase 4134795..4136045 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255452 NP_462817.1 CDS STM3927 NC_003197.1 4136042 4137121 D catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase 4136042..4137121 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255453 NP_462818.1 CDS wecF NC_003197.1 4137118 4138476 D enterobacterial common antigen polymerase; ECA polymerase 4137118..4138476 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255454 NP_462819.1 CDS wecG NC_003197.1 4138473 4139213 D probable UDP-N-acetyl-D-mannosaminuronic acid transferase (SW:WECG_SALTY); UDP-N-acetyl-D-mannosaminuronic acid transferase 4138473..4139213 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255455 NP_462820.1 CDS yifK NC_003197.1 4139420 4140805 D uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function; transporter 4139420..4140805 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255456 NP_462821.1 CDS hemY NC_003197.1 4141922 4143121 R protoheme IX biogenesis protein complement(4141922..4143121) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255461 NP_462822.1 CDS hemX NC_003197.1 4143121 4144290 R uroporphyrinogen III C-methyltransferase complement(4143121..4144290) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255462 NP_462823.1 CDS hemD NC_003197.1 4144312 4145052 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase complement(4144312..4145052) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255463 NP_462824.1 CDS hemC NC_003197.1 4145049 4146005 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(4145049..4146005) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255464 NP_462825.1 CDS cyaA NC_003197.1 4146367 4148913 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 4146367..4148913 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255465 NP_462826.1 CDS STM3940 NC_003197.1 4149021 4149374 D inner membrane protein 4149021..4149374 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255466 NP_462827.1 CDS STM3941 NC_003197.1 4149560 4150102 D inner membrane protein 4149560..4150102 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255467 NP_462828.1 CDS STM3942 NC_003197.1 4150114 4150476 D cytoplasmic protein 4150114..4150476 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255468 NP_462829.1 CDS cyaY NC_003197.1 4150547 4150867 R defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein complement(4150547..4150867) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255469 NP_462830.1 CDS STM3944 NC_003197.1 4150937 4151326 R inner membrane protein complement(4150937..4151326) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255470 NP_462831.1 CDS yifL NC_003197.1 4152022 4152225 D lipoprotein 4152022..4152225 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255472 NP_462832.2 CDS dapF NC_003197.1 4152262 4153086 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4152262..4153086 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255473 NP_462833.1 CDS STM3948 NC_003197.1 4153083 4153790 D hypothetical protein in dapF-xerC intergenic region (SW:YIGA_SALTY); hypothetical protein 4153083..4153790 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255474 NP_462834.1 CDS xerC NC_003197.1 4153787 4154689 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; tyrosine recombinase XerC 4153787..4154689 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255475 NP_462835.1 CDS yigB NC_003197.1 4154689 4155405 D YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; flavin mononucleotide phosphatase 4154689..4155405 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255476 NP_462836.1 CDS uvrD NC_003197.1 4155541 4157703 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 4155541..4157703 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255477 NP_462837.1 CDS corA NC_003197.1 4158175 4159125 D responsible for the influx of magnesium ions; magnesium transport protein CorA 4158175..4159125 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255478 NP_462838.1 CDS STM3953 NC_003197.1 4159174 4159554 R hypothetical 14.6 kDa protein in corA-rarD intergenic region (SW:YIGF_SALTY); hypothetical protein complement(4159174..4159554) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255479 NP_462839.1 CDS yigG NC_003197.1 4159570 4160028 R inner membrane protein complement(4159570..4160028) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255480 NP_462840.1 CDS rarD NC_003197.1 4160063 4160947 R chloramphenicol resistance permease complement(4160063..4160947) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255481 NP_462841.2 CDS STM3956 NC_003197.1 4160991 4161458 R hypothetical protein in rarD-pldA intergenic region (SW:YIGI_SALTY); possibly involved in aromatic compounds catabolism; PaaI; hypothetical protein complement(4160991..4161458) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255482 NP_462842.1 CDS pldA NC_003197.1 4161623 4162492 D catalyzes the hydrolysis of phosphatidylcholine; phospholipase A 4161623..4162492 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255483 NP_462843.1 CDS recQ NC_003197.1 4162558 4164405 D functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; ATP-dependent DNA helicase RecQ 4162558..4164405 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255484 NP_462844.1 CDS rhtC NC_003197.1 4164469 4165089 D RhtB family; threonine efflux protein 4164469..4165089 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255485 NP_462845.1 CDS rhtB NC_003197.1 4165129 4165749 R homoserine/homoserine lactone efflux protein complement(4165129..4165749) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255486 NP_462846.1 CDS pldB NC_003197.1 4165860 4166876 D lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; lysophospholipase L2 4165860..4166876 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255487 NP_462847.1 CDS yigL NC_003197.1 4166892 4167692 D purine and pyrimidine nucleotides are secondary substrates; yigL expression is regulated by heat shock, osmotic shock and starvation of glucose, phosphate or ammonium; HAD superfamily hydrolase 4166892..4167692 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255488 NP_462848.1 CDS yigM NC_003197.1 4167773 4168672 D membrane protein 4167773..4168672 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255489 NP_462849.1 CDS metR NC_003197.1 4168560 4169513 R transcriptional activator protein metR (SW:METR_SALTY); LysR family; HTH-type transcriptional regulator MetR complement(4168560..4169513) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255490 NP_462850.1 CDS metE NC_003197.1 4169762 4172026 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 4169762..4172026 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255491 NP_462851.1 CDS STM3966 NC_003197.1 4172370 4173713 D arylsulfatase regulator 4172370..4173713 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255492 NP_462852.1 CDS dlhH NC_003197.1 4173793 4174605 R carboxymethylenebutenolidase complement(4173793..4174605) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255493 NP_462853.1 CDS udp NC_003197.1 4174864 4175625 D catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4174864..4175625 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255494 NP_462854.1 CDS yigN NC_003197.1 4175765 4177195 D YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner; DNA recombination protein RmuC 4175765..4177195 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255495 NP_462855.1 CDS ubiE NC_003197.1 4177291 4178046 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; converts 2-octaprenyl-6-methoxy-1,4-benzoquinone to 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone; ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE 4177291..4178046 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255496 NP_462856.1 CDS yigP NC_003197.1 4178056 4178661 D inner membrane protein 4178056..4178661 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255497 NP_462857.1 CDS ubiB NC_003197.1 4178658 4180298 D an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; protein kinase UbiB 4178658..4180298 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255498 NP_462858.1 CDS tatA NC_003197.1 4180504 4180758 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; Sec-independent protein translocase protein TatA 4180504..4180758 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255499 NP_462859.1 CDS tatB NC_003197.1 4180762 4181310 D mediates the export of protein precursors bearing twin-arginine signal peptides; Sec-independent protein translocase protein TatB 4180762..4181310 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255500 NP_462860.1 CDS tatC NC_003197.1 4181313 4182092 D with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; Sec-independent protein translocase protein TatC 4181313..4182092 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255501 NP_462861.3 CDS yigW NC_003197.1 4182134 4182916 D magnesium dependent; not involved in the Sec-independent protein export system; DNase TatD 4182134..4182916 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255502 NP_462862.1 CDS rfaH NC_003197.1 4182924 4183412 R transcriptional activator RfaH complement(4182924..4183412) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255503 NP_462863.1 CDS yigC NC_003197.1 4183598 4185076 D catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 4183598..4185076 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255504 NP_462864.1 CDS fre NC_003197.1 4185162 4185863 D NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; NAD(P)H-flavin reductase 4185162..4185863 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255505 NP_462865.1 CDS STM3980 NC_003197.1 4186117 4186830 D outer membrane protein 4186117..4186830 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255506 NP_462866.1 CDS STM3981 NC_003197.1 4186882 4187940 D cytoplasmic protein 4186882..4187940 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255507 NP_462867.1 CDS fadA NC_003197.1 4188137 4189300 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(4188137..4189300) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255508 NP_462868.1 CDS fadB NC_003197.1 4189310 4191499 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha complement(4189310..4191499) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255509 NP_462869.1 CDS pepQ NC_003197.1 4191689 4193020 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; Xaa-Pro dipeptidase 4191689..4193020 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255510 NP_462870.1 CDS yigZ NC_003197.1 4193020 4193634 D cytoplasmic protein 4193020..4193634 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255511 NP_462871.1 CDS trkH NC_003197.1 4193673 4195124 D Trk system potassium uptake protein TrkH 4193673..4195124 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255512 NP_462872.1 CDS hemG NC_003197.1 4195136 4195681 D catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen IX dehydrogenase 4195136..4195681 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255513 NP_462873.1 CDS mobB NC_003197.1 4201684 4202199 R in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; molybdopterin-guanine dinucleotide biosynthesis protein B complement(4201684..4202199) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255519 NP_462874.1 CDS mobA NC_003197.1 4202196 4202780 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdenum cofactor guanylyltransferase complement(4202196..4202780) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255520 NP_462875.1 CDS yihD NC_003197.1 4202850 4203119 D cytoplasmic protein 4202850..4203119 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255521 NP_462876.1 CDS yihE NC_003197.1 4203196 4204182 D serine/threonine protein kinase; MazF antagonist; catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; stress response kinase A 4203196..4204182 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255522 NP_462877.1 CDS dsbA NC_003197.1 4204199 4204822 D thiol-disulfide interchange protein DabA (SW:DSBA_SALTY); thiol:disulfide interchange protein DsbA 4204199..4204822 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255523 NP_462878.1 CDS yihG NC_003197.1 4204835 4205743 R acyltransferase complement(4204835..4205743) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255524 NP_462879.1 CDS polA NC_003197.1 4206131 4208917 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 4206131..4208917 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255525 NP_462881.1 CDS engB NC_003197.1 4209252 4209884 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; GTP-binding protein EngB complement(4209252..4209884) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255527 NP_462882.1 CDS STM4002 NC_003197.1 4210124 4210348 D cytoplasmic protein 4210124..4210348 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255528 NP_462883.1 CDS yihI NC_003197.1 4210467 4210982 D Der GTPase-activating protein YihI 4210467..4210982 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255529 NP_462884.1 CDS hemN NC_003197.1 4211171 4212544 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4211171..4212544 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255530 NP_462885.1 CDS glnG NC_003197.1 4212857 4214266 R response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; nitrogen regulation protein NR(I) complement(4212857..4214266) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255531 NP_462886.1 CDS glnL NC_003197.1 4214275 4215324 R sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) complement(4214275..4215324) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255532 NP_462887.1 CDS glnA NC_003197.1 4215599 4217008 R forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase complement(4215599..4217008) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255533 NP_462889.1 CDS typA NC_003197.1 4217384 4219207 D GTP-binding elongation factor family protein 4217384..4219207 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255535 NP_462890.1 CDS STM4010 NC_003197.1 4219262 4219996 R similar to Escherichia coli phosphatase (AAC73853.1); hydrolase complement(4219262..4219996) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255536 NP_462891.1 CDS STM4011 NC_003197.1 4219981 4220859 R inner membrane protein complement(4219981..4220859) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255537 NP_462892.1 CDS STM4012 NC_003197.1 4220856 4222097 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(4220856..4222097) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255538 NP_462893.2 CDS STM4013.S NC_003197.1 4222099 4222962 R membrane-associated metal-dependent hydrolase complement(4222099..4222962) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255539 NP_462894.2 CDS STM4014 NC_003197.1 4222967 4223575 R periplasmic protein complement(4222967..4223575) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255540 NP_462895.1 CDS STM4015 NC_003197.1 4224005 4224853 R cytoplasmic protein complement(4224005..4224853) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255541 NP_462896.1 CDS ompL NC_003197.1 4225010 4225702 R porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown; porin OmpL complement(4225010..4225702) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255542 NP_462897.1 CDS yihO NC_003197.1 4225770 4227191 R symporter complement(4225770..4227191) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255543 NP_462898.1 CDS yihP NC_003197.1 4227237 4228619 R inner membrane symporter complement(4227237..4228619) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255544 NP_462899.1 CDS yihQ NC_003197.1 4228665 4230701 R alpha-glucosidase complement(4228665..4230701) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255545 NP_462900.2 CDS yihR NC_003197.1 4230745 4231596 R aldose-1-epimerase complement(4230745..4231596) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255546 NP_462901.1 CDS yihS NC_003197.1 4231606 4232847 R isomerase complement(4231606..4232847) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255547 NP_462902.1 CDS yihT NC_003197.1 4232863 4233741 R aldolase complement(4232863..4233741) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255548 NP_462903.1 CDS yihU NC_003197.1 4233764 4234660 R oxidoreductase complement(4233764..4234660) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255549 NP_462904.2 CDS yihV NC_003197.1 4234819 4235721 D sugar kinase 4234819..4235721 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255550 NP_462905.1 CDS yihW NC_003197.1 4235755 4236558 D glycerol-3-phosphate regulon repressor 4235755..4236558 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255551 NP_462906.1 CDS yihX NC_003197.1 4236749 4237348 D alpha-D-glucose-1-phosphate phosphatase 4236749..4237348 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255552 NP_462907.1 CDS STM4027 NC_003197.1 4237342 4238214 D hypothetical protein 4237342..4238214 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255553 NP_462908.1 CDS yihZ NC_003197.1 4238211 4238648 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4238211..4238648 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255554 NP_462909.1 CDS yiiD NC_003197.1 4238645 4239634 D acetyltransferase 4238645..4239634 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255555 NP_462910.2 CDS STM4030.S NC_003197.1 4239649 4240077 R hypothetical protein complement(4239649..4240077) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255556 NP_462911.1 CDS STM4031 NC_003197.1 4240092 4240403 R cytoplasmic protein complement(4240092..4240403) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255557 NP_462912.1 CDS STM4032 NC_003197.1 4240489 4241418 R acetyl esterase complement(4240489..4241418) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255558 NP_945170.1 CDS STM4032.2N NC_003197.1 4241636 4241947 D hypothetical protein 4241636..4241947 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673731 NP_462913.2 CDS STM4033 NC_003197.1 4241948 4242238 D merR family; MerR family regulatory protein 4241948..4242238 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255559 NP_462914.1 CDS fdhE NC_003197.1 4242285 4243214 R required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE complement(4242285..4243214) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255560 NP_462915.1 CDS fdoI NC_003197.1 4243211 4243846 R cytochrome b556(FDO) component; heme containing; formate dehydrogenase-O cytochrome B556 subunit complement(4243211..4243846) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255561 NP_462916.1 CDS fdoH NC_003197.1 4243843 4244745 R formate dehydrogenase-O Fe-S subunit complement(4243843..4244745) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255562 NP_462917.1 CDS fdoG NC_003197.1 4244758 4247808 R formate dehydrogenase large subunit complement(4244758..4247808) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255563 NP_462918.1 CDS fdhD NC_003197.1 4248003 4248839 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein FdhD 4248003..4248839 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255564 NP_462919.1 CDS STM4039 NC_003197.1 4249107 4250138 R inner membrane lipoprotein complement(4249107..4250138) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255565 NP_462920.1 CDS yiiG NC_003197.1 4250363 4251421 D cytoplasmic protein 4250363..4251421 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255566 NP_462921.1 CDS STM4041 NC_003197.1 4251776 4252099 R inner membrane protein complement(4251776..4252099) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255567 NP_462922.1 CDS STM4042 NC_003197.1 4252099 4252758 R branched-chain amino acid permease complement(4252099..4252758) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255568 NP_462923.1 CDS STM4042A NC_003197.1 4252841 4253407 D hypothetical protein 4252841..4253407 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255569 NP_462924.1 CDS yiiL NC_003197.1 4253496 4253810 R L-rhamnose mutarotase complement(4253496..4253810) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255570 NP_462925.1 CDS STM4044 NC_003197.1 4253807 4254955 R alcohol dehydrogenase complement(4253807..4254955) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255571 NP_462926.1 CDS rhaD NC_003197.1 4255082 4255909 R rhamnulose-1-phosphate aldolase complement(4255082..4255909) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255572 NP_462927.1 CDS rhaA NC_003197.1 4256052 4257311 R catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase complement(4256052..4257311) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255573 NP_462928.1 CDS rhaB NC_003197.1 4257308 4258777 R catalyzes the ATP-dependent phosphorylation of rhamnulose; rhamnulokinase complement(4257308..4258777) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255574 NP_462929.1 CDS rhaS NC_003197.1 4259065 4259901 D activates the expression of the rhaBAD operon and rhaT gene; HTH-type transcriptional activator RhaS 4259065..4259901 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255575 NP_462930.1 CDS rhaR NC_003197.1 4260054 4260902 D activates the expression of rhaRS in response to L-rhamnose; HTH-type transcriptional activator RhaR 4260054..4260902 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255576 NP_462931.1 CDS rhaT NC_003197.1 4260899 4261933 R transports L-rhamnose and L-lyxose into the cell; L-rhamnose-proton symporter complement(4260899..4261933) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255577 NP_462932.2 CDS STM4051 NC_003197.1 4262564 4263235 D hypothetical 15.6 kDa protein in RhaT 5'region (SW:YIIY_SALTY); hypothetical protein 4262564..4263235 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255578 NP_462933.1 CDS STM4052 NC_003197.1 4263393 4264700 R C4-dicarboxylate transport system complement(4263393..4264700) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255579 NP_462934.1 CDS STM4053 NC_003197.1 4264693 4265208 R C4-dicarboxylate transport system complement(4264693..4265208) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255580 NP_462935.1 CDS STM4054 NC_003197.1 4265227 4266210 R hypothetical protein in sodA 5'region (SW:YIIZ_SALTY); hypothetical protein complement(4265227..4266210) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255581 NP_462936.1 CDS sodA NC_003197.1 4266539 4267159 D SodA; manganese binding; only present under aerobic conditions; destroys free radicals; superoxide dismutase 4266539..4267159 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255582 NP_462937.2 CDS STM4056.S NC_003197.1 4267229 4267918 D hypothetical protein 4267229..4267918 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255583 NP_462938.1 CDS STM4057 NC_003197.1 4267930 4268325 D inner membrane protein 4267930..4268325 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255584 NP_462939.1 CDS cpxA NC_003197.1 4268376 4269749 R part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; sensory kinase CpxS complement(4268376..4269749) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255585 NP_462940.1 CDS cpxR NC_003197.1 4269746 4270444 R response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; response reguator CpxR complement(4269746..4270444) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255586 NP_462941.1 CDS cpxP NC_003197.1 4270595 4271095 D repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; cpx regulon periplasmic repressor 4270595..4271095 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255587 NP_462942.1 CDS fieF NC_003197.1 4271243 4272145 D member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; cation-efflux pump FieF 4271243..4272145 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255588 NP_462943.1 CDS pfkA NC_003197.1 4272330 4273292 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 4272330..4273292 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255589 NP_462944.1 CDS sbp NC_003197.1 4273496 4274485 D sulfate-binding protein (SW:SUBI_SALTY); ABC superfamily binding protein; sulfate-binding protein 4273496..4274485 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255590 NP_462945.1 CDS ushB NC_003197.1 4274586 4275341 D CDP-diacylglycerol pyrophosphatase (SW:CDH_SALTY); CDP-diacylglycerol pyrophosphatase 4274586..4275341 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255591 NP_462946.1 CDS STM4065 NC_003197.1 4275604 4276938 D Na+/galactoside symporter 4275604..4276938 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255592 NP_462947.1 CDS STM4066 NC_003197.1 4276949 4277908 D phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; sugar kinase 4276949..4277908 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255593 NP_462948.1 CDS STM4067 NC_003197.1 4277918 4278958 D ADP-ribosylglycohydrolase 4277918..4278958 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255594 NP_462949.1 CDS STM4068 NC_003197.1 4279021 4279743 D GntR family regulatory protein 4279021..4279743 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255595 NP_462950.1 CDS STM4069 NC_003197.1 4279841 4280005 D periplasmic protein 4279841..4280005 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255596 NP_462951.1 CDS STM4070 NC_003197.1 4280021 4280152 D hypothetical protein 4280021..4280152 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255597 NP_462952.1 CDS STM4071 NC_003197.1 4280242 4280508 R mannose-6-phosphate isomerase complement(4280242..4280508) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255598 NP_462953.1 CDS ydeV NC_003197.1 4280606 4282198 R autoinducer-2 kinase LsrK complement(4280606..4282198) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255599 NP_462954.1 CDS STM4073 NC_003197.1 4282286 4283245 R transcriptional regulator LysR complement(4282286..4283245) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255600 NP_462955.1 CDS STM4074 NC_003197.1 4283501 4285036 D autoinducer 2 import system ATP-binding protein LsrA 4283501..4285036 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255601 NP_462956.1 CDS STM4075 NC_003197.1 4285030 4286073 D autoinducer 2 import system permease LsrC 4285030..4286073 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255602 NP_462957.1 CDS STM4076 NC_003197.1 4286070 4287071 D autoinducer 2 import system permease LsrD 4286070..4287071 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255603 NP_462958.1 CDS STM4077 NC_003197.1 4287100 4288122 D autoinducer 2 import system substrate-binding protein LsrB 4287100..4288122 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255604 NP_462959.1 CDS STM4078 NC_003197.1 4288151 4289026 D autoinducer-2 aldolase LsrF 4288151..4289026 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255605 NP_462960.2 CDS STM4079.S NC_003197.1 4289106 4289399 D autoinducer-2 degrading protein LsrG 4289106..4289399 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255606 NP_462961.1 CDS STM4080 NC_003197.1 4289409 4290173 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; epimerase 4289409..4290173 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255607 NP_462962.1 CDS tpiA NC_003197.1 4290265 4291032 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(4290265..4291032) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255608 NP_462963.1 CDS yiiQ NC_003197.1 4291145 4291741 R periplasmic protein complement(4291145..4291741) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255609 NP_462964.1 CDS yiiR NC_003197.1 4291842 4292270 D inner membrane protein 4291842..4292270 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255610 NP_462965.1 CDS fpr NC_003197.1 4292377 4293123 R ferredoxin-NADP reductase complement(4292377..4293123) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255611 NP_462966.1 CDS glpX NC_003197.1 4293220 4294230 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(4293220..4294230) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255612 NP_462967.1 CDS glpK NC_003197.1 4294342 4295850 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(4294342..4295850) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255613 NP_462968.1 CDS glpF NC_003197.1 4295871 4296716 R glycerol diffusion protein complement(4295871..4296716) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255614 NP_462969.1 CDS yiiU NC_003197.1 4297115 4297354 D cell division protein ZapB 4297115..4297354 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255615 NP_462970.1 CDS menG NC_003197.1 4297576 4298061 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(4297576..4298061) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255616 NP_462971.1 CDS menA NC_003197.1 4298154 4299083 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(4298154..4299083) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255617 NP_462972.1 CDS hslU NC_003197.1 4299150 4300481 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATPase subunit HslU complement(4299150..4300481) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255618 NP_462973.1 CDS hslV NC_003197.1 4300491 4301021 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit HslV complement(4300491..4301021) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255619 NP_462974.1 CDS ftsN NC_003197.1 4301113 4302087 R essential cell division protein FtsN complement(4301113..4302087) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255620 NP_462975.1 CDS cytR NC_003197.1 4302181 4303206 R negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; GalR/LacI family transcriptional repressor complement(4302181..4303206) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255621 NP_462976.1 CDS priA NC_003197.1 4303361 4305559 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosomal protein N' complement(4303361..4305559) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255622 NP_462977.1 CDS rpmE NC_003197.1 4305763 4305975 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 4305763..4305975 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255623 NP_462978.1 CDS STM4097 NC_003197.1 4306021 4306683 R outer membrane lipoprotein complement(4306021..4306683) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255624 NP_462979.1 CDS STM4098 NC_003197.1 4306884 4308674 R arylsulfate sulfotransferase complement(4306884..4308674) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255625 NP_462980.1 CDS metJ NC_003197.1 4309131 4309448 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor MetJ complement(4309131..4309448) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255626 NP_462981.1 CDS metB NC_003197.1 4309713 4310873 D catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 4309713..4310873 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255627 NP_462982.1 CDS metL NC_003197.1 4310876 4313308 D multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 4310876..4313308 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255628 NP_462983.1 CDS STM4102 NC_003197.1 4313424 4314281 R mechanosensitive channel protein complement(4313424..4314281) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255629 YP_006892408.1 CDS STM05910 NC_003197.1 4314284 4315282 R hypothetical protein complement(4314284..4315282) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865725 NP_462984.1 CDS STM4103 NC_003197.1 4315517 4316641 R cytoplasmic protein complement(4315517..4316641) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255630 NP_462985.1 CDS STM4104 NC_003197.1 4316777 4318333 D 5'-nucleotidase 4316777..4318333 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255631 NP_462986.1 CDS metF NC_003197.1 4318528 4319418 D MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 4318528..4319418 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255632 NP_462987.1 CDS katG NC_003197.1 4319583 4321763 D peroxidase/catalase HPI (SW:CATA_SALTY); catalase-peroxidase 4319583..4321763 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255633 NP_462988.1 CDS yijF NC_003197.1 4321821 4322444 R periplasmic protein complement(4321821..4322444) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255634 NP_462989.1 CDS gldA NC_003197.1 4322703 4323806 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase complement(4322703..4323806) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255635 NP_462990.1 CDS talC NC_003197.1 4323818 4324480 R fructose-6-phosphate aldolase complement(4323818..4324480) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255636 NP_462991.1 CDS ptsA NC_003197.1 4324491 4326992 R PEP-protein phosphotransferase complement(4324491..4326992) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255637 NP_462992.1 CDS frwC NC_003197.1 4327301 4328380 D FrwC with FrwB, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; forms translocation channel and contains the specific substrate-binding site; PTS system fructose-like transporter subunit IIC 4327301..4328380 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255639 NP_462993.1 CDS frwB NC_003197.1 4328395 4328715 D FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS; PTS system fructose-like transporter subunit IIB 4328395..4328715 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255640 NP_462994.1 CDS pflD NC_003197.1 4328814 4331111 D involved in production of D-lactate from glucose under microaerobic conditions; cytoplasmic protein; pyruvate formate lyase II 4328814..4331111 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255641 NP_462995.1 CDS pflC NC_003197.1 4331077 4331955 D pyruvate formate lyase II activase 4331077..4331955 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255642 NP_462996.1 CDS frwD NC_003197.1 4331957 4332310 D FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog; PTS system fructose-like transporter subunit IIB 4331957..4332310 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255643 NP_462997.1 CDS yijO NC_003197.1 4332297 4333148 R AraC/XylS family transcriptional regulator complement(4332297..4333148) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255644 NP_462998.1 CDS STM4118 NC_003197.1 4333309 4335042 R phosphoethanolamine transferase CptA complement(4333309..4335042) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255645 NP_462999.1 CDS ppc NC_003197.1 4335253 4337904 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(4335253..4337904) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255646 NP_463000.1 CDS argE NC_003197.1 4338273 4339424 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase complement(4338273..4339424) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255647 NP_463001.1 CDS argC NC_003197.1 4339513 4340517 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 4339513..4340517 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255648 NP_463002.2 CDS argB NC_003197.1 4340528 4341301 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4340528..4341301 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255649 NP_463003.1 CDS argH NC_003197.1 4341419 4342795 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 4341419..4342795 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255650 NP_463004.1 CDS oxyR NC_003197.1 4343080 4343997 D Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR 4343080..4343997 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255651 NP_463005.1 CDS udhA NC_003197.1 4343980 4345380 R catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase complement(4343980..4345380) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255652 NP_463006.2 CDS fabR NC_003197.1 4345582 4346214 D negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; HTH-type transcriptional repressor FabR 4345582..4346214 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255653 NP_463007.1 CDS yijD NC_003197.1 4346230 4346589 D inner membrane protein 4346230..4346589 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255654 NP_463008.1 CDS trmA NC_003197.1 4346636 4347736 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA/tmRNA (uracil-C(5))-methyltransferase complement(4346636..4347736) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255655 NP_463009.1 CDS btuB NC_003197.1 4348110 4349954 D involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; vitamin B12 transporter BtuB 4348110..4349954 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255656 NP_463010.1 CDS murI NC_003197.1 4349899 4350750 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 4349899..4350750 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255657 NP_463011.1 CDS murB NC_003197.1 4356672 4357700 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4356672..4357700 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255663 NP_463012.1 CDS birA NC_003197.1 4357697 4358659 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; bifunctional ligase/repressor BirA 4357697..4358659 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255664 NP_463013.1 CDS coaA NC_003197.1 4358694 4359644 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(4358694..4359644) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255665 NP_463014.1 CDS STM4141 NC_003197.1 4359853 4360026 R cytoplasmic protein complement(4359853..4360026) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255667 NP_463015.1 CDS tuf NC_003197.1 4360603 4361787 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 4360603..4361787 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255672 NP_463016.1 CDS secE NC_003197.1 4362017 4362400 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 4362017..4362400 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255673 NP_463017.1 CDS nusG NC_003197.1 4362402 4362947 D Modulates Rho-dependent transcription termination; transcription termination/antitermination protein NusG 4362402..4362947 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255674 NP_463018.1 CDS rplK NC_003197.1 4363105 4363533 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 4363105..4363533 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255675 NP_463019.1 CDS rplA NC_003197.1 4363537 4364241 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 4363537..4364241 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255676 NP_463020.1 CDS rplJ NC_003197.1 4364661 4365158 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4364661..4365158 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255677 NP_463021.1 CDS rplL NC_003197.1 4365225 4365590 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 4365225..4365590 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255678 NP_463022.1 CDS rpoB NC_003197.1 4365908 4369936 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4365908..4369936 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255679 NP_463023.1 CDS rpoC NC_003197.1 4370013 4374236 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4370013..4374236 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255680 NP_463024.1 CDS STM4155 NC_003197.1 4374278 4374601 D inner membrane protein 4374278..4374601 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255681 NP_463025.1 CDS STM4156 NC_003197.1 4374607 4374951 R cytoplasmic protein complement(4374607..4374951) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255682 NP_463026.1 CDS STM4157 NC_003197.1 4375350 4376360 D cytoplasmic protein 4375350..4376360 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255683 NP_463027.1 CDS STM4158 NC_003197.1 4376683 4376871 D cytoplasmic protein 4376683..4376871 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255684 NP_463028.1 CDS thiH NC_003197.1 4377022 4378155 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; catalyzes the formation of 2-iminoacetate and 4-cresol from tyrosine; forms a complex with ThiG; contains an iron-sulfur center; 2-iminoacetate synthase complement(4377022..4378155) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255685 NP_463029.1 CDS thiG NC_003197.1 4378152 4378922 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(4378152..4378922) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255686 NP_463030.1 CDS STM4161 NC_003197.1 4378924 4379124 R with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS complement(4378924..4379124) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255687 NP_463031.1 CDS thiF NC_003197.1 4379105 4379863 R catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF complement(4379105..4379863) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255688 NP_463032.1 CDS thiE NC_003197.1 4379856 4380491 R catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate synthase complement(4379856..4380491) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255689 NP_463033.1 CDS thiC NC_003197.1 4380491 4382386 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; phosphomethylpyrimidine synthase complement(4380491..4382386) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255690 NP_463034.1 CDS rsd NC_003197.1 4382750 4383238 R binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor complement(4382750..4383238) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255691 NP_463035.1 CDS nudC NC_003197.1 4383331 4384104 D can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 4383331..4384104 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255692 NP_463036.1 CDS hemE NC_003197.1 4384145 4385209 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 4384145..4385209 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255693 NP_463037.1 CDS nfi NC_003197.1 4385219 4385890 D Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures; endonuclease V 4385219..4385890 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255694 NP_463038.1 CDS STM4169 NC_003197.1 4385932 4386522 D hypothetical protein 4385932..4386522 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255695 NP_463039.1 CDS hupA NC_003197.1 4386709 4386981 D histone-like DNA-binding protein; DNA-binding protein HU-alpha 4386709..4386981 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255696 NP_463040.1 CDS yjaH NC_003197.1 4386993 4387685 D inner membrane protein 4386993..4387685 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255697 NP_463041.1 CDS zraP NC_003197.1 4387727 4388182 R zinc resistance protein complement(4387727..4388182) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255698 NP_463042.1 CDS hydH NC_003197.1 4388436 4389833 D sensor protein HydA (SW:HYDH_SALTY); in two component regulatory system with HydG; sensor protein ZraS 4388436..4389833 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255699 NP_463043.1 CDS hydG NC_003197.1 4389839 4391164 D DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; transcriptional regulator ZraR 4389839..4391164 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255700 NP_463044.1 CDS purD NC_003197.1 4391161 4392450 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(4391161..4392450) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255701 NP_463045.1 CDS purH NC_003197.1 4392462 4394051 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(4392462..4394051) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255702 NP_463046.1 CDS yjaB NC_003197.1 4400247 4400684 R N-acetyltransferase complement(4400247..4400684) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255707 NP_463047.1 CDS metA NC_003197.1 4400841 4401770 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 4400841..4401770 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255708 NP_463048.1 CDS aceB NC_003197.1 4402039 4403640 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4402039..4403640 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255709 NP_463049.1 CDS aceA NC_003197.1 4403672 4404976 D Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 4403672..4404976 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255710 NP_463050.1 CDS aceK NC_003197.1 4405078 4406829 D catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase 4405078..4406829 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255711 NP_463051.1 CDS STM4186 NC_003197.1 4406793 4407200 R cytoplasmic protein complement(4406793..4407200) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255712 NP_463052.1 CDS iclR NC_003197.1 4407211 4408035 R regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; acetate operon repressor complement(4407211..4408035) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255713 NP_463053.2 CDS metH NC_003197.1 4408339 4412022 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4408339..4412022 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255714 NP_463054.1 CDS yjbB NC_003197.1 4412289 4413920 D Na/Pi co-transporter 4412289..4413920 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255715 NP_463055.1 CDS pepE NC_003197.1 4413996 4414685 R alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E complement(4413996..4414685) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255716 NP_463056.1 CDS STM4191 NC_003197.1 4414757 4414858 D cytoplasmic protein 4414757..4414858 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255717 NP_463057.1 CDS STM4192 NC_003197.1 4414893 4415432 D cytoplasmic protein 4414893..4415432 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255718 NP_463058.1 CDS rluF NC_003197.1 4415479 4416348 D catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; rRNA large subunit pseudouridine synthase F 4415479..4416348 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255719 NP_463059.1 CDS yjbD NC_003197.1 4416345 4416617 R cytoplasmic protein complement(4416345..4416617) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255720 NP_463060.1 CDS STM4195 NC_003197.1 4416715 4417656 R Na+-dependent transporter complement(4416715..4417656) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255721 NP_463061.1 CDS STM4196 NC_003197.1 4417918 4418646 R cytoplasmic protein complement(4417918..4418646) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255722 NP_463062.1 CDS STM4197 NC_003197.1 4418843 4419133 R inner membrane protein complement(4418843..4419133) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255723 NP_463063.1 CDS STM4198 NC_003197.1 4419382 4419837 R cytoplasmic protein complement(4419382..4419837) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255724 NP_463064.1 CDS STM4199 NC_003197.1 4419834 4420439 R cytoplasmic protein complement(4419834..4420439) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255725 NP_463065.1 CDS STM4200 NC_003197.1 4420444 4422189 R phage tail fiber protein H complement(4420444..4422189) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255726 NP_463066.1 CDS STM4201 NC_003197.1 4422192 4422824 R phage tail protein complement(4422192..4422824) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255727 NP_463067.1 CDS STM4202 NC_003197.1 4422817 4423932 R phage baseplate protein complement(4422817..4423932) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255728 NP_463068.1 CDS STM4203 NC_003197.1 4423923 4424282 R phage baseplate protein complement(4423923..4424282) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255729 NP_463069.1 CDS STM4204 NC_003197.1 4424446 4425993 R inner membrane protein complement(4424446..4425993) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255730 NP_463070.1 CDS STM4205 NC_003197.1 4425993 4426922 R phage glycosyltransferase complement(4425993..4426922) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255731 NP_463071.1 CDS STM4206 NC_003197.1 4426919 4427281 R phage glucose translocase complement(4426919..4427281) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255732 NP_463072.1 CDS STM4207 NC_003197.1 4427609 4428331 R phage baseplate component complement(4427609..4428331) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255733 NP_463073.1 CDS STM4208 NC_003197.1 4428341 4429384 R cytoplasmic protein complement(4428341..4429384) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255734 NP_463074.1 CDS STM4209 NC_003197.1 4429372 4429581 R inner membrane protein complement(4429372..4429581) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255735 NP_463075.1 CDS STM4210 NC_003197.1 4429581 4430534 R methyl-accepting chemotaxis protein complement(4429581..4430534) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255736 NP_463076.1 CDS STM4211 NC_003197.1 4430534 4432888 R phage tail protein complement(4430534..4432888) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255737 NP_463077.1 CDS STM4212 NC_003197.1 4433440 4433964 R phage tail core protein complement(4433440..4433964) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255738 NP_463078.1 CDS STM4213 NC_003197.1 4433964 4435391 R phage tail sheath protein complement(4433964..4435391) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255739 NP_463079.1 CDS STM4214 NC_003197.1 4435381 4435578 R cytoplasmic protein complement(4435381..4435578) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255740 NP_463080.1 CDS STM4215 NC_003197.1 4435575 4436030 R cytoplasmic protein complement(4435575..4436030) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255741 NP_463081.1 CDS STM4216 NC_003197.1 4436190 4436504 R inner membrane protein complement(4436190..4436504) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255742 NP_463082.1 CDS STM4217 NC_003197.1 4436517 4437122 R soluble lytic murein transglycosylase complement(4436517..4437122) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255743 NP_463083.1 CDS STM4218 NC_003197.1 4437125 4437412 R inner membrane protein complement(4437125..4437412) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255744 NP_463084.2 CDS STM4219.S NC_003197.1 4437988 4438335 D hypothetical protein 4437988..4438335 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255745 NP_463085.1 CDS lysC NC_003197.1 4438468 4439817 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartokinase complement(4438468..4439817) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255746 NP_463086.1 CDS pgi NC_003197.1 4440162 4441811 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 4440162..4441811 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255747 NP_463087.2 CDS yjbE NC_003197.1 4442255 4442497 D outer membrane protein 4442255..4442497 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255748 NP_463088.2 CDS yjbF NC_003197.1 4442561 4443199 D outer membrane lipoprotein 4442561..4443199 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255749 NP_463089.1 CDS yjbG NC_003197.1 4443196 4443933 D periplasmic protein 4443196..4443933 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255750 NP_463090.1 CDS yjbH NC_003197.1 4443933 4446029 D outer membrane lipoprotein 4443933..4446029 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255751 NP_463091.1 CDS yjbA NC_003197.1 4446172 4446582 D phosphate-starvation-inducible protein PsiE 4446172..4446582 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255752 NP_463092.1 CDS malG NC_003197.1 4446748 4447638 R with MalKFE is involved in the transport of maltose into the cell; maltose ABC transporter permease MalG complement(4446748..4447638) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255753 NP_463093.1 CDS malF NC_003197.1 4447653 4449197 R with MalKGE is involved in maltose transport into the cell; maltose ABC transporter permease MalF complement(4447653..4449197) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255754 NP_463094.2 CDS malE NC_003197.1 4449329 4450519 R functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter substrate-binding protein MalE complement(4449329..4450519) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255755 NP_463095.1 CDS malK NC_003197.1 4450881 4451990 D with malEFG is involved in import of maltose/maltodextrin; maltose ABC transporter ATP-binding protein MalK 4450881..4451990 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255756 NP_463096.1 CDS lamB NC_003197.1 4452079 4453437 D porin involved in the transport of maltose and maltodextrins; maltoporin 4452079..4453437 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255757 NP_463097.1 CDS malM NC_003197.1 4453601 4454518 D maltose operon periplasmic protein (SW:MALM_SALTY); protein of mal regulon; maltose regulon periplasmic protein 4453601..4454518 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255758 NP_463098.1 CDS ubiC NC_003197.1 4454699 4455196 D catalyzes the formation of 4-hydroxybenzoate from chorismate; chorismate pyruvate lyase 4454699..4455196 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255759 NP_463099.1 CDS ubiA NC_003197.1 4455210 4456082 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 4455210..4456082 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255760 NP_463100.1 CDS plsB NC_003197.1 4456181 4458601 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(4456181..4458601) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255761 NP_463101.1 CDS dgkA NC_003197.1 4458772 4459140 D diacylglycerol kinase 4458772..4459140 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255762 NP_463102.1 CDS lexA NC_003197.1 4459249 4459857 D Represses a number of genes involved in the response to DNA damage; LexA repressor 4459249..4459857 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255763 NP_463103.1 CDS dinF NC_003197.1 4460035 4461360 D DNA-damage-inducible protein F 4460035..4461360 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255764 NP_463104.1 CDS STM4239 NC_003197.1 4461357 4461470 D cytoplasmic protein 4461357..4461470 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255765 NP_463105.1 CDS yjbJ NC_003197.1 4461489 4461701 D unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential; stress-response protein 4461489..4461701 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255766 NP_463106.1 CDS zur NC_003197.1 4461800 4462315 R Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB; zinc uptake transcriptional repressor complement(4461800..4462315) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255767 NP_463107.1 CDS STM4242 NC_003197.1 4462562 4463872 D conjugative transfer protein 4462562..4463872 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255768 NP_463108.1 CDS yjbN NC_003197.1 4463960 4464958 D TIM-barrel enzyme; possibly dehydrogenases; nifR3 family; tRNA-dihydrouridine synthase A 4463960..4464958 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255769 NP_463109.1 CDS pspG NC_003197.1 4465126 4465368 D coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia; phage shock protein G 4465126..4465368 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255770 NP_463110.1 CDS qor NC_003197.1 4465543 4466526 R quinone oxidoreductase complement(4465543..4466526) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255771 NP_463111.1 CDS dnaB NC_003197.1 4466591 4468006 D unwinds double stranded DNA; replicative DNA helicase 4466591..4468006 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255772 NP_463112.1 CDS alr NC_003197.1 4468038 4469117 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 4468038..4469117 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255773 NP_463113.1 CDS tyrB NC_003197.1 4469303 4470496 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4469303..4470496 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255774 NP_463114.1 CDS aphA NC_003197.1 4470683 4471396 D Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; class B acid phosphatase 4470683..4471396 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255775 NP_463115.1 CDS STM4250 NC_003197.1 4471525 4471941 D hypothetical protein 4471525..4471941 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255776 NP_463116.1 CDS yjbR NC_003197.1 4471944 4472300 D cytoplasmic protein 4471944..4472300 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255777 NP_463117.1 CDS STM4252 NC_003197.1 4472301 4472639 R inner membrane protein complement(4472301..4472639) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255778 NP_463118.1 CDS STM4253 NC_003197.1 4472626 4473081 R outer membrane lipoprotein complement(4472626..4473081) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255779 NP_463119.1 CDS uvrA NC_003197.1 4473213 4476038 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(4473213..4476038) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255780 NP_463120.1 CDS STM4255 NC_003197.1 4476003 4476119 D cytoplasmic protein 4476003..4476119 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255781 NP_463121.1 CDS ssb NC_003197.1 4476286 4476816 D binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein 4476286..4476816 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255782 NP_463122.1 CDS STM4257 NC_003197.1 4477857 4478489 D inner membrane or exported protein spi4_A; hypothetical protein 4477857..4478489 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255783 NP_463123.1 CDS STM4258 NC_003197.1 4478486 4479874 D methyl-accepting chemotaxis protein 4478486..4479874 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255784 NP_463124.1 CDS STM4259 NC_003197.1 4479864 4481183 D ABC exporter outer membrane protein 4479864..4481183 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255785 NP_463125.1 CDS STM4260 NC_003197.1 4481180 4482457 D membrane permease; HlyD secretion protein; membrane permease 4481180..4482457 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255786 NP_463126.1 CDS STM4261 NC_003197.1 4482474 4499153 D fusion of two Salmonella typhimurium hypothetical proteins; may contain rearrangements with respect to similar proteins; inner membrane protein 4482474..4499153 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255787 NP_463127.1 CDS STM4262 NC_003197.1 4499193 4501259 D bacteriocin/lantibiotic ABC transporter 4499193..4501259 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255788 NP_463128.1 CDS yjcB NC_003197.1 4501537 4501818 R inner membrane protein complement(4501537..4501818) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255789 NP_463129.1 CDS yjcC NC_003197.1 4502381 4503982 D diguanylate cyclase/phosphodiesterase 4502381..4503982 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255790 NP_463130.1 CDS soxS NC_003197.1 4503970 4504293 R regulates genes involved in response to oxidative stress; DNA-binding transcriptional regulator SoxS complement(4503970..4504293) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255791 NP_463131.1 CDS soxR NC_003197.1 4504380 4504838 D redox-sensitive transcriptional activator SOXR (SW:SOXR_SALTY); MerR family; contains iron-sulfur center for redox-sensing; redox-sensitive transcriptional activator SoxR 4504380..4504838 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255792 NP_463132.1 CDS STM4267 NC_003197.1 4505131 4505799 D glutathione S-transferase 4505131..4505799 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255793 NP_463133.1 CDS STM4268 NC_003197.1 4506146 4507495 D xanthine/uracil permease family; hypothetical protein 4506146..4507495 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255794 NP_463134.1 CDS yjcE NC_003197.1 4507645 4509291 D CPA1 family; Na/H transport protein 4507645..4509291 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255795 NP_463135.1 CDS STM4270 NC_003197.1 4509386 4510273 R transcriptional regulator complement(4509386..4510273) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255796 NP_463136.1 CDS STM4271 NC_003197.1 4510377 4510787 D inner membrane protein 4510377..4510787 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255797 NP_463137.1 CDS STM4272 NC_003197.1 4510780 4511469 D inner membrane protein 4510780..4511469 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255798 NP_463138.1 CDS actP NC_003197.1 4511508 4513157 R member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; cation/acetate symporter ActP complement(4511508..4513157) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255799 NP_463139.1 CDS yjcH NC_003197.1 4513154 4513468 R inner membrane protein complement(4513154..4513468) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255800 NP_463140.1 CDS acs NC_003197.1 4513714 4515672 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(4513714..4515672) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255801 NP_463141.1 CDS STM4276 NC_003197.1 4515859 4516005 D cytoplasmic protein 4515859..4516005 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255802 NP_463142.1 CDS nrfA NC_003197.1 4516104 4517540 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 4516104..4517540 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255803 NP_463143.2 CDS nrfB NC_003197.1 4517652 4518218 D part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; cytochrome c nitrite reductase pentaheme subunit 4517652..4518218 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255804 NP_463144.1 CDS nrfC NC_003197.1 4518215 4518886 D formate-dependent nitrite reductase 4518215..4518886 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255805 NP_463145.1 CDS nrfD NC_003197.1 4518883 4519839 D formate-dependent nitrate reductase 4518883..4519839 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255806 NP_463146.1 CDS nrfE NC_003197.1 4519832 4522054 D formate-dependent nitrite reductase 4519832..4522054 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255807 NP_463147.1 CDS nrfG NC_003197.1 4522051 4522671 D formate-dependent nitrite reductase complex subunit NrfG 4522051..4522671 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255808 NP_463148.1 CDS gltP NC_003197.1 4523016 4524326 D carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system; glutamate/aspartate:proton symporter 4523016..4524326 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255809 NP_463149.1 CDS STM4284 NC_003197.1 4524484 4525173 R contains TPR repeats; hypothetical protein complement(4524484..4525173) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255810 NP_463150.1 CDS fdhF NC_003197.1 4525350 4527497 R formate dehydrogenase complement(4525350..4527497) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255811 NP_463151.1 CDS lpxO NC_003197.1 4527852 4528760 R dioxygenase for lipid synthesis; LpxO; dioxygenase complement(4527852..4528760) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255812 NP_463152.2 CDS phnO NC_003197.1 4529018 4529452 R PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role; aminoalkylphosphonic acid N-acetyltransferase complement(4529018..4529452) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255813 NP_463153.1 CDS phnB NC_003197.1 4529604 4530047 R cytoplasmic protein complement(4529604..4530047) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255814 NP_463154.1 CDS STM4289 NC_003197.1 4530167 4530502 R involved in phosphonate metabolism; hypothetical protein complement(4530167..4530502) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255815 NP_463155.1 CDS proP NC_003197.1 4530970 4532472 D proline/betaine transporter 4530970..4532472 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255816 NP_463156.1 CDS basS NC_003197.1 4532639 4533709 R sensor protein BasS/PmrB (SW:BASS_SALTY); in two-component regulatory system with BasR; sensor protein BasS complement(4532639..4533709) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255817 NP_463157.1 CDS basR NC_003197.1 4533719 4534387 R response regulator in two-component regulatory system with BasS; transcriptional regulator BasR complement(4533719..4534387) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255818 NP_463158.1 CDS eptA NC_003197.1 4534384 4536027 R involved in resistance to polymixin B by modifying lipid A; phosphoethanolamine transferase complement(4534384..4536027) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255819 NP_463159.1 CDS yjdE NC_003197.1 4536161 4537498 R arginine/agmatin antiporter complement(4536161..4537498) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255820 NP_463160.1 CDS adiY NC_003197.1 4537638 4538399 R transcriptional activator complement(4537638..4538399) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255821 NP_463161.1 CDS adi NC_003197.1 4538697 4540967 R catabolic arginine decarboxylase complement(4538697..4540967) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255822 NP_463162.1 CDS melR NC_003197.1 4541197 4542129 R DNA-binding transcriptional regulator MelR complement(4541197..4542129) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255823 NP_463163.1 CDS melA NC_003197.1 4542398 4543753 D alpha-galactosidase (SW:AGAL_SALTY); alpha-galactosidase 4542398..4543753 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255824 NP_463164.1 CDS melB NC_003197.1 4543837 4545267 D melibiose carrier protein; thiomethylgalactoside permease; melibiose permease; Na+/Li+ melibiose symporter; melibiosetransporter (SW:MELB_SALTY); GPH family; melibiose:sodium symporter 4543837..4545267 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255825 NP_463165.1 CDS fumB NC_003197.1 4545365 4547011 R fumarase B complement(4545365..4547011) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255826 NP_463166.1 CDS dcuB NC_003197.1 4547107 4548447 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter complement(4547107..4548447) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255827 NP_463167.1 CDS STM4302 NC_003197.1 4548594 4548860 R cytoplasmic protein complement(4548594..4548860) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255828 NP_463168.1 CDS dcuR NC_003197.1 4549177 4549896 R response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; transcriptional regulator complement(4549177..4549896) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255829 NP_463169.1 CDS dcuS NC_003197.1 4549893 4551524 R C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; sensory histidine kinase DcuS complement(4549893..4551524) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255830 NP_463170.2 CDS STM4305.S NC_003197.1 4551880 4554309 D anaerobic dimethylsulfoxide reductase subunit A 4551880..4554309 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255831 NP_463171.1 CDS STM4306 NC_003197.1 4554323 4554949 D anaerobic dimethylsulfoxide reductase subunit B 4554323..4554949 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255832 NP_463172.1 CDS STM4307 NC_003197.1 4554942 4555715 D anaerobic dimethylsulfoxide reductase subunit C 4554942..4555715 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255833 NP_463173.1 CDS STM4308 NC_003197.1 4555731 4556384 D anaerobic dehydrogenase subunit 4555731..4556384 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255834 NP_463174.1 CDS STM4309 NC_003197.1 4556468 4557868 R hypothetical protein complement(4556468..4557868) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255835 NP_463175.1 CDS STM4310 NC_003197.1 4558172 4559077 D inner membrane protein 4558172..4559077 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255836 NP_463176.1 CDS tnpA_6 NC_003197.1 4559416 4559874 D transposase for insertion sequence element is200 (SW:T200_SALTY); insertion sequence element IS200 transposase 4559416..4559874 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255837 NP_463177.1 CDS STM4312 NC_003197.1 4560083 4560352 R hypothetical protein complement(4560083..4560352) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255838 NP_463178.1 CDS STM4313 NC_003197.1 4560360 4560575 R cytoplasmic protein complement(4560360..4560575) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255839 NP_463179.2 CDS STM4314 NC_003197.1 4560598 4560870 R LuxR family; LuxR family transcriptional regulator complement(4560598..4560870) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255840 NP_463180.1 CDS STM4315 NC_003197.1 4560882 4561757 R HilD; AraC-type; contains DNA-binding domain; AraC-type DNA-binding domain-containing protein complement(4560882..4561757) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255841 NP_463181.1 CDS STM4316 NC_003197.1 4562022 4562243 R cytoplasmic protein complement(4562022..4562243) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255842 NP_463182.1 CDS STM4317 NC_003197.1 4562560 4562853 D CopG family; helix-turn-helix protein; hypothetical protein 4562560..4562853 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255843 NP_463183.1 CDS STM4318 NC_003197.1 4562850 4563341 D acetyltransferase 4562850..4563341 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255844 NP_463184.1 CDS phoN NC_003197.1 4563589 4564341 R nonspecific acid phosphatase (SW:PHON_SALTY); non-specific acid phosphatase complement(4563589..4564341) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255845 YP_006892409.1 CDS STM06000 NC_003197.1 4565550 4565927 R hypothetical protein complement(4565550..4565927) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 13865712 NP_463185.1 CDS STM4320 NC_003197.1 4565999 4566331 D MerR family regulatory protein 4565999..4566331 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255846 NP_463186.1 CDS yjdC NC_003197.1 4566770 4567345 R MerR family regulatory protein complement(4566770..4567345) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255848 NP_463187.1 CDS dipZ NC_003197.1 4567382 4569085 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein DsbD complement(4567382..4569085) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255849 NP_463188.1 CDS cutA NC_003197.1 4569061 4569408 R copper binding protein required for copper tolerance; involved in resistance toward heavy metals; divalent-cation tolerance protein CutA complement(4569061..4569408) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255850 NP_463189.1 CDS dcuA NC_003197.1 4569529 4570830 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(4569529..4570830) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255851 NP_463190.1 CDS aspA NC_003197.1 4570945 4572381 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(4570945..4572381) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255852 NP_463191.2 CDS fxsA NC_003197.1 4572722 4573198 D F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 4572722..4573198 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255853 NP_463192.1 CDS yjeH NC_003197.1 4573257 4574498 R uncharacterized member of the APC superfamily of amino acid transporters; unknown function; transporter complement(4573257..4574498) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255854 NP_463193.1 CDS groES NC_003197.1 4574774 4575067 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4574774..4575067 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255855 NP_463194.1 CDS groEL NC_003197.1 4575111 4576757 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 4575111..4576757 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255856 NP_463195.1 CDS yjeI NC_003197.1 4576983 4577354 D outer membrane lipoprotein 4576983..4577354 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255857 NP_463196.1 CDS yjeJ NC_003197.1 4577402 4578259 R inner membrane protein complement(4577402..4578259) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255858 NP_463197.1 CDS yjeK NC_003197.1 4578541 4579569 R L-lysine 2,3-aminomutase complement(4578541..4579569) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255859 NP_463198.1 CDS efp NC_003197.1 4579610 4580176 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 4579610..4580176 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255860 NP_463199.1 CDS ecnA NC_003197.1 4580195 4580371 D entericidin A 4580195..4580371 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255861 NP_463200.1 CDS ecnB NC_003197.1 4580479 4580625 D entericidin B 4580479..4580625 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255862 NP_463201.1 CDS ecnR NC_003197.1 4580656 4581243 R LuxR family; LuxR family transcriptional regulator complement(4580656..4581243) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255863 NP_463202.1 CDS sugE NC_003197.1 4581500 4581817 D member of the SMR family of proton-dependent drug efflux transporters; quaternary ammonium compound efflux pump; confers resistance to cetylpyridinium, cetyldimethylethyl ammonium and cetrimide cations; quaternary ammonium compound-resistance protein SugE 4581500..4581817 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255864 NP_463203.1 CDS blc NC_003197.1 4581834 4582367 R lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc complement(4581834..4582367) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255865 NP_463204.1 CDS frdD NC_003197.1 4582479 4582838 R in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D complement(4582479..4582838) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255866 NP_463205.1 CDS frdC NC_003197.1 4582849 4583244 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C complement(4582849..4583244) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255867 NP_463206.1 CDS frdB NC_003197.1 4583255 4583989 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit complement(4583255..4583989) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255868 NP_463207.1 CDS frdA NC_003197.1 4583982 4585772 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit complement(4583982..4585772) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255869 NP_463208.1 CDS yjeA NC_003197.1 4586095 4587072 D catalyzes the activation of beta-lysine which is then transfered to L34 of EF-P; elongation factor P--(R)-beta-lysine ligase 4586095..4587072 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255870 NP_463209.1 CDS yjeM NC_003197.1 4587298 4588800 D hypothetical protein in poxA-psd intergenic region (SW:YJEM_SALTY); APC family; inner membrane transporter 4587298..4588800 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255871 NP_463210.1 CDS yjeO NC_003197.1 4588852 4589166 D inner membrane protein 4588852..4589166 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255872 NP_463211.1 CDS yjeP NC_003197.1 4589233 4592559 R mechanosensitive channel protein complement(4589233..4592559) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255873 NP_463212.1 CDS psd NC_003197.1 4592578 4593546 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase complement(4592578..4593546) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255874 NP_463213.2 CDS rsgA NC_003197.1 4593638 4594690 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome biogenesis GTPase RsgA complement(4593638..4594690) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255875 NP_463214.1 CDS orn NC_003197.1 4594797 4595342 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 4594797..4595342 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255876 NP_463215.3 CDS STM4351 NC_003197.1 4595404 4596144 R arginine ABC transporter substrate-binding protein complement(4595404..4596144) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255877 NP_463216.2 CDS yjeS NC_003197.1 4597229 4598368 R epoxyqueuosine reductase complement(4597229..4598368) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255881 NP_463217.1 CDS yjeF NC_003197.1 4598367 4599914 D bifunctional ADP-dependent (S)-NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase 4598367..4599914 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255882 NP_463218.1 CDS yjeE NC_003197.1 4599886 4600347 D tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein 4599886..4600347 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255883 NP_463219.1 CDS amiB NC_003197.1 4600364 4601683 D N-acetylmuramoyl-L-alanine amidase AMIB (SW:AMIB_SALTY); a murein hydrolase; N-acetylmuramoyl-l-alanine amidase AmiB 4600364..4601683 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255884 NP_463220.1 CDS mutL NC_003197.1 4601693 4603549 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein MutL 4601693..4603549 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255885 NP_463221.1 CDS miaA NC_003197.1 4603542 4604492 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA dimethylallyltransferase 4603542..4604492 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255886 NP_463222.1 CDS hfq NC_003197.1 4604575 4604883 D Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 4604575..4604883 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255887 NP_463223.1 CDS hflX NC_003197.1 4604955 4606235 D involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; GTPase HflX 4604955..4606235 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255888 NP_463224.1 CDS hflK NC_003197.1 4606451 4607710 D with HflC inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflK 4606451..4607710 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255889 NP_463225.1 CDS hflC NC_003197.1 4607713 4608717 D with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC 4607713..4608717 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255890 NP_463226.1 CDS yjeT NC_003197.1 4608796 4608993 D inner membrane protein 4608796..4608993 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255891 NP_463227.1 CDS purA NC_003197.1 4609096 4610394 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 4609096..4610394 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255892 NP_463228.1 CDS yjeB NC_003197.1 4610601 4611026 D negatively regulates the transcription of genes upregulated by nitrosative stress; HTH-type transcriptional repressor NsrR 4610601..4611026 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255893 NP_463229.1 CDS vacB NC_003197.1 4611064 4613502 D 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; ribonuclease R 4611064..4613502 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255894 NP_463230.1 CDS yjfH NC_003197.1 4613593 4614324 D Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 4613593..4614324 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255895 NP_463231.1 CDS yjfI NC_003197.1 4614456 4614860 D cytoplasmic protein 4614456..4614860 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255896 NP_463232.1 CDS yjfJ NC_003197.1 4614875 4615573 D phage shock protein A 4614875..4615573 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255897 NP_463233.1 CDS STM4372 NC_003197.1 4615573 4616643 D potassium channel protein 4615573..4616643 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255898 NP_463234.2 CDS yjfK NC_003197.1 4616640 4617299 D cytoplasmic protein 4616640..4617299 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255899 NP_463235.1 CDS yjfL NC_003197.1 4617317 4617715 D inner membrane protein 4617317..4617715 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255900 NP_463236.1 CDS yjfM NC_003197.1 4617725 4618363 D inner membrane protein 4617725..4618363 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255901 NP_463237.1 CDS yjfC NC_003197.1 4618366 4619529 D glutathionylspermidine synthase 4618366..4619529 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255902 NP_463238.3 CDS aidB NC_003197.1 4619614 4621236 D DNA alkylation damage repair protein 4619614..4621236 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255903 NP_463239.1 CDS yjfN NC_003197.1 4621281 4621601 R inner membrane protein complement(4621281..4621601) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255904 NP_463240.1 CDS yjfO NC_003197.1 4621687 4622016 R in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility; biofilm peroxide resistance protein complement(4621687..4622016) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255905 NP_463241.1 CDS yjfP NC_003197.1 4622200 4622949 D YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; acyl-CoA esterase 4622200..4622949 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255906 NP_463242.1 CDS yjfQ NC_003197.1 4622946 4623701 R negative regulator of ulaG and ulaABCDEF; HTH-type transcriptional repressor UlaR complement(4622946..4623701) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255907 NP_463243.1 CDS yjfR NC_003197.1 4623806 4624870 R contains beta-lactamase fold; L-ascorbate 6-phosphate lactonase complement(4623806..4624870) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255908 NP_463244.2 CDS ulaA NC_003197.1 4625233 4626630 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 4625233..4626630 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255909 NP_463245.1 CDS sgaB NC_003197.1 4626646 4626951 D involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIB 4626646..4626951 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255910 NP_463246.1 CDS ptxA NC_003197.1 4626961 4627425 D involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIA 4626961..4627425 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255911 NP_463247.1 CDS ulaD NC_003197.1 4627439 4628089 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 4627439..4628089 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255912 NP_463248.1 CDS sgaU NC_003197.1 4628099 4628953 D UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway; L-ribulose-5-phosphate 3-epimerase UlaE 4628099..4628953 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255913 NP_463249.1 CDS sgaE NC_003197.1 4628953 4629639 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase UlaF 4628953..4629639 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255914 NP_463250.1 CDS yjfY NC_003197.1 4629768 4630043 R outer membrane protein complement(4629768..4630043) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255915 NP_463251.1 CDS STM4390 NC_003197.1 4630237 4630443 D cytoplasmic protein 4630237..4630443 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255916 NP_463252.1 CDS rpsF NC_003197.1 4630514 4630909 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 4630514..4630909 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255917 NP_463253.1 CDS priB NC_003197.1 4630916 4631230 D binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 4630916..4631230 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255918 NP_463254.1 CDS rpsR NC_003197.1 4631235 4631462 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4631235..4631462 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255919 NP_463255.1 CDS rplI NC_003197.1 4631504 4631953 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4631504..4631953 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255920 NP_463256.1 CDS yifZ NC_003197.1 4632101 4633027 D permease 4632101..4633027 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255921 NP_463257.1 CDS ytfB NC_003197.1 4633077 4633712 R cell envelope opacity-associated protein A complement(4633077..4633712) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255922 NP_463258.2 CDS fklB NC_003197.1 4633932 4634552 D FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase 4633932..4634552 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255923 NP_463259.1 CDS cycA NC_003197.1 4634848 4636257 D involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 4634848..4636257 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255924 NP_463260.1 CDS ytfE NC_003197.1 4636369 4637031 R Involved in anaerobic NO protection and iron metabolism; iron-sulfur cluster repair protein complement(4636369..4637031) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255925 NP_463261.1 CDS ytfF NC_003197.1 4637134 4638099 R cationic amino acid transporter complement(4637134..4638099) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255926 NP_463262.1 CDS ytfG NC_003197.1 4638180 4639028 R reductase complement(4638180..4639028) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255927 NP_463263.1 CDS ytfH NC_003197.1 4639116 4639502 D transcriptional regulator 4639116..4639502 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255928 NP_463264.1 CDS cpdB NC_003197.1 4639560 4641503 R periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein complement(4639560..4641503) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255929 NP_463265.1 CDS cysQ NC_003197.1 4641771 4642511 D catalyzes the formation of AMP from adenosine-3',5'-bisphosphate; 3'(2'),5'-bisphosphate nucleotidase CysQ 4641771..4642511 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255930 NP_463266.1 CDS ytfJ NC_003197.1 4642501 4643058 R transcriptional regulator complement(4642501..4643058) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255931 NP_463267.2 CDS STM4406.S NC_003197.1 4643385 4643591 D hypothetical protein 4643385..4643591 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255932 NP_463268.1 CDS ytfL NC_003197.1 4643676 4645019 R hemolysin-like protein complement(4643676..4645019) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255933 NP_463269.1 CDS msrA NC_003197.1 4645202 4645840 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; peptide methionine sulfoxide reductase A complement(4645202..4645840) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255934 NP_463270.1 CDS ytfM NC_003197.1 4646053 4647786 D outer membrane protein 4646053..4647786 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255935 NP_463271.1 CDS ytfN NC_003197.1 4647783 4651562 D periplasmic protein 4647783..4651562 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255936 NP_463272.1 CDS ytfP NC_003197.1 4651565 4651909 D cytoplasmic protein 4651565..4651909 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255937 NP_463273.1 CDS STM4412 NC_003197.1 4651963 4653171 R pemease complement(4651963..4653171) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255938 NP_463274.1 CDS STM4413 NC_003197.1 4653168 4654331 R Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; amidohydrolase complement(4653168..4654331) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255939 NP_463275.1 CDS ppa NC_003197.1 4654741 4655271 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(4654741..4655271) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255940 NP_463276.1 CDS fbp NC_003197.1 4655498 4656496 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(4655498..4656496) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255941 NP_463277.1 CDS mpl NC_003197.1 4656671 4658050 D UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4656671..4658050 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255942 NP_463278.1 CDS STM4417 NC_003197.1 4658541 4659374 D transcriptional regulator 4658541..4659374 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255943 NP_463279.1 CDS STM4418 NC_003197.1 4659425 4660858 R sugar transporter complement(4659425..4660858) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255944 NP_463280.1 CDS STM4419 NC_003197.1 4661317 4662753 D sugar transporter 4661317..4662753 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255945 NP_463281.1 CDS STM4420 NC_003197.1 4663106 4663915 R inner membrane protein complement(4663106..4663915) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255946 NP_463282.1 CDS STM4421 NC_003197.1 4663940 4665445 R NAD-dependent aldehyde dehydrogenase complement(4663940..4665445) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255947 NP_463284.1 CDS STM4423 NC_003197.1 4665886 4666710 D AraC-type DNA-binding domain-containing protein 4665886..4666710 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255949 NP_463285.2 CDS STM4424.S NC_003197.1 4666985 4667890 D inosose dehydratase 4666985..4667890 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255950 NP_463286.1 CDS STM4425 NC_003197.1 4667909 4668919 D inositol 2-dehydrogenas 4667909..4668919 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255951 NP_463287.1 CDS srfJ NC_003197.1 4669016 4670359 D glycosyl hydrolase family protein 4669016..4670359 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255952 NP_463288.1 CDS STM4427 NC_003197.1 4670360 4671193 D endonuclease 4670360..4671193 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255953 NP_463289.1 CDS STM4428 NC_003197.1 4671190 4672356 R major facilitator superfamily transporter complement(4671190..4672356) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255954 NP_463294.1 CDS STM4433 NC_003197.1 4676890 4677912 D dehydrogenase 4676890..4677912 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255959 NP_463295.1 CDS STM4434 NC_003197.1 4677985 4679211 D permease 4677985..4679211 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255960 NP_463296.1 CDS STM4435 NC_003197.1 4679372 4680187 D cytoplasmic protein 4679372..4680187 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255961 NP_463297.1 CDS STM4436 NC_003197.1 4680240 4681124 D endonuclease 4680240..4681124 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255962 NP_463298.1 CDS STM4437 NC_003197.1 4681180 4681731 R hypothetical protein complement(4681180..4681731) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255963 NP_463299.1 CDS pmbA NC_003197.1 4681827 4683179 D protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptide maturation protein 4681827..4683179 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255964 NP_463300.1 CDS cybC NC_003197.1 4683278 4683664 D cytochrome b562 4683278..4683664 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255965 NP_463301.1 CDS STM4440 NC_003197.1 4683942 4684280 D nitrogen regulation protein NR(ii) (SW:NTRB_SALTY); cytoplasmic protein 4683942..4684280 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255966 NP_463302.1 CDS STM4441 NC_003197.1 4684291 4684653 D cytoplasmic protein 4684291..4684653 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255967 NP_463303.1 CDS STM4442 NC_003197.1 4684653 4684955 D cytoplasmic protein 4684653..4684955 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255968 NP_463304.1 CDS STM4443 NC_003197.1 4684978 4685754 D inner membrane protein 4684978..4685754 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255969 NP_463305.1 CDS STM4444 NC_003197.1 4685766 4686410 D inner membrane protein 4685766..4686410 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255970 NP_463306.1 CDS STM4445 NC_003197.1 4686469 4687602 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 4686469..4687602 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255971 NP_463307.1 CDS STM4446 NC_003197.1 4687586 4688704 D L-seryl-tRNA selenium transferase; selenocysteine synthase 4687586..4688704 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255972 NP_463308.1 CDS STM4447 NC_003197.1 4688701 4689330 D periplasmic protein 4688701..4689330 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255973 NP_463309.1 CDS STM4448 NC_003197.1 4689457 4691370 D Ntr-type; PTS system mannitol/fructose-specific transporter subunit IIA 4689457..4691370 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255974 NP_463310.1 CDS STM4449 NC_003197.1 4691448 4691690 D Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 4691448..4691690 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255975 NP_463311.1 CDS STM4450 NC_003197.1 4691680 4691964 D inner membrane protein 4691680..4691964 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255976 NP_463312.1 CDS nrdG NC_003197.1 4691968 4692432 R activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide-triphosphate reductase-activating protein complement(4691968..4692432) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255977 NP_463313.1 CDS nrdD NC_003197.1 4692553 4694691 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside-triphosphate reductase complement(4692553..4694691) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255978 NP_945171.1 CDS STM4452.1N NC_003197.1 4694896 4695066 D hypothetical protein 4694896..4695066 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673768 NP_463314.1 CDS treC NC_003197.1 4695100 4696752 R trehalose-6-phosphate hydrolase complement(4695100..4696752) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255979 NP_463315.1 CDS treR NC_003197.1 4698357 4699304 R regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; HTH-type transcriptional regulator TreR complement(4698357..4699304) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255981 NP_463316.1 CDS mgtA NC_003197.1 4699688 4702396 D P-type ATPase involved in magnesium influx; magnesium-transporting ATPase 4699688..4702396 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255982 NP_463317.1 CDS STM4457 NC_003197.1 4702512 4702958 R transposase complement(4702512..4702958) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255983 NP_463318.1 CDS yjgF NC_003197.1 4703033 4703419 R enamine/imine deaminase complement(4703033..4703419) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255984 NP_463319.1 CDS pyrI NC_003197.1 4703496 4703957 R involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit complement(4703496..4703957) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255985 NP_463320.1 CDS pyrB NC_003197.1 4703970 4704905 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(4703970..4704905) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255986 NP_463321.1 CDS pyrL NC_003197.1 4704941 4705042 R pyrBI operon leader peptide (attenuator) (SW:LPPY_SALTY); contains a frameshift and premature stop as compared to Escherichia coli pyrBI operon leader peptide; pyrBI operon leader peptide complement(4704941..4705042) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255987 NP_463323.1 CDS STM4463 NC_003197.1 4705132 4705620 R arginine repressor complement(4705132..4705620) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255989 NP_463324.1 CDS STM4464 NC_003197.1 4705807 4707210 R arginine repressor complement(4705807..4707210) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255990 NP_463325.1 CDS STM4465 NC_003197.1 4707266 4708270 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase complement(4707266..4708270) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255991 NP_463326.1 CDS STM4466 NC_003197.1 4708382 4709314 R reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(4708382..4709314) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255992 NP_463327.1 CDS STM4467 NC_003197.1 4709325 4710545 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(4709325..4710545) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255993 NP_463328.1 CDS yjgK NC_003197.1 4711221 4711673 D cytoplasmic protein 4711221..4711673 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255994 NP_463329.1 CDS argI NC_003197.1 4711747 4712751 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.; ornithine carbamoyltransferase complement(4711747..4712751) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255995 NP_463330.1 CDS yjgD NC_003197.1 4712917 4713333 D hypothetical 15.7 dda protein in argI-miaE intergenic region (ORF15.6) (SW:YJGD_SALTY); ribonuclease regulator 4712917..4713333 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255996 NP_463331.1 CDS miaE NC_003197.1 4713345 4714157 D tRNA-hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA (SW:MIAE_SALTY); tRNA-(ms[2]io[6]A)-hydroxylase 4713345..4714157 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255997 NP_463332.1 CDS STM4472 NC_003197.1 4714391 4714879 R hypothetical 17.8 kKa protein in miaE 3'region (ORF 17.8) (SW:YTGA_SALTY); hypothetical protein complement(4714391..4714879) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255998 NP_463333.1 CDS yjgM NC_003197.1 4714986 4715489 R hypothetical 18.3 kDa protein in miaE 3'region (ORF 18.3) (SW:YJGM_SALTY); acetyltransferase complement(4714986..4715489) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255999 NP_463334.1 CDS yjgN NC_003197.1 4715684 4716871 D hypothetical protein in miaE 3'region (ORF x) (SW:YJGN_SALTY); inner membrane protein 4715684..4716871 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256000 NP_463335.1 CDS valS NC_003197.1 4717013 4719868 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valine--tRNA ligase complement(4717013..4719868) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256001 NP_463336.2 CDS holC NC_003197.1 4719868 4720311 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(4719868..4720311) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256002 NP_463337.1 CDS pepA NC_003197.1 4720448 4721959 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; cytosol aminopeptidase complement(4720448..4721959) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256003 NP_463338.1 CDS STM4478 NC_003197.1 4722003 4722122 R cytoplasmic protein complement(4722003..4722122) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256004 NP_463339.1 CDS yjgP NC_003197.1 4722354 4723454 D permease 4722354..4723454 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256005 NP_463340.1 CDS yjgQ NC_003197.1 4723454 4724536 D permease 4723454..4724536 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256006 NP_463341.1 CDS idnR NC_003197.1 4724731 4725729 R L-idonate regulator complement(4724731..4725729) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256007 NP_463342.1 CDS idnT NC_003197.1 4725793 4727112 R GntP family L-idonate transport protein complement(4725793..4727112) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256008 NP_463343.1 CDS idnO NC_003197.1 4727174 4727938 R Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; 5-keto-D-gluconate-5-reductase complement(4727174..4727938) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256009 NP_463344.1 CDS idnD NC_003197.1 4727963 4728994 R NAD-binding; L-idonate 5-dehydrogenase complement(4727963..4728994) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256010 NP_463345.1 CDS idnK NC_003197.1 4729211 4729741 D D-gluconate kinase 4729211..4729741 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256011 NP_463346.1 CDS yjgB NC_003197.1 4729769 4730788 R alcohol dehydrogenase complement(4729769..4730788) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256012 NP_463347.1 CDS STM4488 NC_003197.1 4731314 4731601 D integrase 4731314..4731601 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256014 NP_463348.1 CDS STM4489 NC_003197.1 4731963 4735478 D DNA helicase 4731963..4735478 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256015 NP_463349.1 CDS STM4490 NC_003197.1 4735575 4736564 D Mrr; restriction endonuclease 4735575..4736564 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256016 NP_463350.1 CDS STM4491 NC_003197.1 4736677 4738761 R ATP-dependent Lon protease complement(4736677..4738761) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256017 NP_463351.1 CDS STM4492 NC_003197.1 4738772 4741369 R cytoplasmic protein complement(4738772..4741369) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256018 NP_463352.1 CDS STM4493 NC_003197.1 4741372 4742193 R cytoplasmic protein complement(4741372..4742193) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256019 NP_463353.1 CDS STM4494 NC_003197.1 4742171 4743262 R sugar/spermidine/putrescine ABC transporter ATPase complement(4742171..4743262) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256020 NP_463354.1 CDS STM4495 NC_003197.1 4743262 4746939 R type II restriction enzyme methylase subunit complement(4743262..4746939) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256021 NP_463355.1 CDS STM4496 NC_003197.1 4746985 4750626 R DNA repair ATPase complement(4746985..4750626) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256022 NP_463356.1 CDS STM4497 NC_003197.1 4750638 4751240 R cytoplasmic protein complement(4750638..4751240) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256023 NP_463357.1 CDS STM4498 NC_003197.1 4751237 4751839 R inner membrane protein complement(4751237..4751839) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256024 NP_463358.2 CDS yeeN NC_003197.1 4752665 4753381 R transcriptional regulator complement(4752665..4753381) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256025 NP_463359.1 CDS yjhP NC_003197.1 4753941 4755572 R SAM-dependent methyltransferase complement(4753941..4755572) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256026 NP_463360.1 CDS STM4501 NC_003197.1 4755577 4755834 R hypothetical protein complement(4755577..4755834) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256027 NP_463361.1 CDS STM4502 NC_003197.1 4756323 4756931 D cytoplasmic protein 4756323..4756931 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256028 NP_463362.1 CDS STM4503 NC_003197.1 4757441 4758178 D inner membrane protein 4757441..4758178 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256029 NP_463363.1 CDS STM4504 NC_003197.1 4758454 4759365 D IicA; cytoplasmic protein 4758454..4759365 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256030 NP_463364.1 CDS STM4505 NC_003197.1 4759570 4760031 D inner membrane or exported; hypothetical protein 4759570..4760031 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256031 NP_463365.1 CDS STM4506 NC_003197.1 4760028 4760702 R dienelactone hydrolase complement(4760028..4760702) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256032 NP_463366.1 CDS uxuR NC_003197.1 4761052 4761825 D regulates the expression of uxuBA; DNA-binding transcriptional repressor UxuR 4761052..4761825 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256033 NP_463367.1 CDS trpS2 NC_003197.1 4761826 4762839 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II complement(4761826..4762839) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256034 NP_945172.1 CDS STM4508.1N NC_003197.1 4763136 4763288 D hypothetical protein 4763136..4763288 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673744 NP_463368.2 CDS STM4509.S NC_003197.1 4763641 4764087 D hypothetical protein 4763641..4764087 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256035 NP_463369.1 CDS STM4510 NC_003197.1 4764326 4765060 D aspartate racemase 4764326..4765060 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256036 NP_463370.1 CDS yjiE NC_003197.1 4765066 4765974 R LysR family transcriptional regulator complement(4765066..4765974) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256037 NP_463371.1 CDS iadA NC_003197.1 4766093 4767265 R isoaspartyl dipeptidase complement(4766093..4767265) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256038 NP_463372.1 CDS yjiG NC_003197.1 4767278 4767739 R inner membrane protein complement(4767278..4767739) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256039 NP_463373.2 CDS yjiH NC_003197.1 4767736 4768407 R inner membrane protein complement(4767736..4768407) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256040 NP_463374.1 CDS yjiJ NC_003197.1 4769280 4770464 R sugar transporter complement(4769280..4770464) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256041 NP_463375.1 CDS yjiN NC_003197.1 4770684 4771955 R inner membrane protein complement(4770684..4771955) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256042 NP_463376.1 CDS yjiO NC_003197.1 4772042 4773283 R multidrug resistance protein MdtM complement(4772042..4773283) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256043 NP_463377.1 CDS STM4518 NC_003197.1 4773762 4774277 D inner membrane protein 4773762..4774277 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256044 NP_463378.1 CDS STM4519 NC_003197.1 4774458 4775828 D NAD-dependent aldehyde dehydrogenase 4774458..4775828 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256045 NP_463379.1 CDS STM4520 NC_003197.1 4775923 4776066 R cytoplasmic protein complement(4775923..4776066) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256046 NP_463380.1 CDS yjiS NC_003197.1 4776033 4776197 D cytoplasmic protein 4776033..4776197 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256047 NP_463381.1 CDS STM4522 NC_003197.1 4776272 4776973 R inner membrane protein complement(4776272..4776973) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256048 NP_463382.1 CDS yjiW NC_003197.1 4777047 4777379 R involved in the degradation of RNA; may be involved in the recycling of RNA during the SOS response; endoribonuclease SymE complement(4777047..4777379) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256049 NP_463383.1 CDS hsdS NC_003197.1 4777606 4779015 R S protein; STYSJI specificity protein (SW:T1S_SALTY); specificity determinant for hsdM and hsdR; type I restriction enzyme specificity protein complement(4777606..4779015) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256050 NP_463384.1 CDS hsdM NC_003197.1 4779012 4780601 R type I restriction enzyme STYSJI Mm protein (SW:T1M_SALTY); host modification; type I restriction enzyme methylase complement(4779012..4780601) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256051 NP_463385.1 CDS hsdR NC_003197.1 4780759 4784268 R restriction endonuclease; the EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'; subunit R is required for both nuclease and ATPase activities; endonuclease R complement(4780759..4784268) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256052 NP_463386.1 CDS mrr NC_003197.1 4784466 4785380 D methylated adenine/cytosine restriction protein 4784466..4785380 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256053 NP_463387.1 CDS STM4528 NC_003197.1 4785649 4785936 D inner membrane protein 4785649..4785936 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256054 NP_463388.1 CDS STM4529 NC_003197.1 4785923 4786225 D cytoplasmic protein 4785923..4786225 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256055 NP_463389.1 CDS yjiA NC_003197.1 4786300 4787256 R GTPase complement(4786300..4787256) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256056 NP_463390.1 CDS yjiX NC_003197.1 4787267 4787470 R cytoplasmic protein complement(4787267..4787470) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256057 NP_463391.1 CDS yjiY NC_003197.1 4787565 4789715 R carbon starvation protein complement(4787565..4789715) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256058 NP_463392.1 CDS tsr NC_003197.1 4790082 4791743 D methyl-accepting chemotaxis protein I 4790082..4791743 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256059 NP_463393.1 CDS STM4534 NC_003197.1 4792067 4794832 D NtrC family transcriptional regulator 4792067..4794832 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256060 NP_463394.1 CDS STM4535 NC_003197.1 4794934 4795356 D PTS system mannose-specific transporter subunit IIA 4794934..4795356 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256061 NP_463395.1 CDS STM4536 NC_003197.1 4795371 4795832 D PTS system mannose-specific transporter subunit IIB 4795371..4795832 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256062 NP_463396.1 CDS STM4537 NC_003197.1 4795858 4796637 D PTS system mannose-specific transporter subunit IIC 4795858..4796637 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256063 NP_463397.1 CDS STM4538 NC_003197.1 4796627 4797463 D PTS system mannose-specific transporter subunit IID 4796627..4797463 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256064 NP_463398.1 CDS STM4539 NC_003197.1 4797476 4798537 D glucosamine-fructose-6-phosphate aminotransferase 4797476..4798537 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256065 NP_463399.2 CDS STM4540.S NC_003197.1 4798555 4799565 D glucosamine-fructose-6-phosphate aminotransferase 4798555..4799565 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256066 NP_463400.2 CDS mdoB NC_003197.1 4799699 4801990 R catalyzes the transfer of phosphoglycerol to the glucan backbone; phosphoglycerol transferase I complement(4799699..4801990) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256067 NP_463401.1 CDS yjjA NC_003197.1 4802273 4802734 R outer membrane protein complement(4802273..4802734) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256068 NP_463402.1 CDS dnaC NC_003197.1 4802792 4803529 R acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC complement(4802792..4803529) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256069 NP_463403.1 CDS dnaT NC_003197.1 4803532 4804071 R This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'; primosomal protein I complement(4803532..4804071) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256070 NP_463404.1 CDS STM4545 NC_003197.1 4804164 4804637 R hypothetical protein complement(4804164..4804637) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256071 NP_463405.1 CDS yjjP NC_003197.1 4804628 4805539 R membrane protein complement(4804628..4805539) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256072 NP_463406.1 CDS yjjQ NC_003197.1 4806117 4806842 D LuxR/UhpA family transcriptional regulator 4806117..4806842 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256073 NP_463407.2 CDS bglJ NC_003197.1 4806854 4807477 D regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin; DNA-binding transcriptional activator BglJ 4806854..4807477 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256074 NP_463408.1 CDS STM4549 NC_003197.1 4807528 4807986 R cytoplasmic protein complement(4807528..4807986) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256075 NP_463409.1 CDS fhuF NC_003197.1 4808137 4808925 R involved in reduction of ferric iron in cytoplasmic ferrioxamine B; ferric hydroximate transport ferric iron reductase complement(4808137..4808925) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256076 NP_463410.1 CDS STM4551 NC_003197.1 4809046 4810110 R contains diguanylate cyclase/phosphodiesterase domain 1; diguanylate cyclase/phosphodiesterase domain-containing protein complement(4809046..4810110) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256077 NP_463411.1 CDS STM4552 NC_003197.1 4810361 4810597 D inner membrane protein 4810361..4810597 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256078 NP_463412.1 CDS rsmC NC_003197.1 4811138 4812166 R 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; rRNA small subunit methyltransferase C complement(4811138..4812166) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256082 NP_463413.1 CDS holD NC_003197.1 4812269 4812706 D with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 4812269..4812706 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256083 NP_463414.1 CDS rimI NC_003197.1 4812651 4813097 D alanine acetyltransferase that specifically acetylates ribosomal protein S18; ribosomal-protein-alanine N-acetyltransferase 4812651..4813097 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256084 NP_463415.2 CDS yjjG NC_003197.1 4813119 4813796 D manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 4813119..4813796 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256085 NP_463416.1 CDS prfC NC_003197.1 4813888 4815477 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4813888..4815477 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256086 NP_463417.1 CDS osmY NC_003197.1 4815879 4816496 D hyperosmotically inducible periplasmic protein 4815879..4816496 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256087 NP_463418.1 CDS STM4562 NC_003197.1 4816607 4816786 D hypothetical protein 4816607..4816786 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256088 NP_463419.1 CDS yjjU NC_003197.1 4816910 4817983 D phosphoesterase 4816910..4817983 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256089 NP_463420.1 CDS yjjV NC_003197.1 4817980 4818753 D deoxyribonuclease 4817980..4818753 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256090 NP_463421.1 CDS yjjW NC_003197.1 4818786 4819649 R pyruvate formate lyase-activating enzyme complement(4818786..4819649) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256091 NP_463422.1 CDS yjjI NC_003197.1 4819621 4821171 R cytoplasmic protein complement(4819621..4821171) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256092 NP_463423.1 CDS deoC NC_003197.1 4821413 4822210 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 4821413..4822210 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256093 NP_463424.1 CDS deoA NC_003197.1 4822334 4823656 D Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 4822334..4823656 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256094 NP_463425.1 CDS deoB NC_003197.1 4823708 4824931 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 4823708..4824931 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256095 NP_463426.1 CDS deoD NC_003197.1 4825141 4825860 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 4825141..4825860 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256096 NP_463427.1 CDS STM4571 NC_003197.1 4825898 4826470 R outer membrane protein complement(4825898..4826470) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256097 NP_463428.1 CDS stjB NC_003197.1 4826467 4828875 R fimbrial usher protein complement(4826467..4828875) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256098 NP_463429.1 CDS stjC NC_003197.1 4828889 4829596 R member of the periplasmic pilus chaperone family of proteins; fimbrial chaparone protein complement(4828889..4829596) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256099 NP_463430.1 CDS STM4574 NC_003197.1 4829674 4830363 R outer membrane protein complement(4829674..4830363) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256100 NP_463431.1 CDS STM4575 NC_003197.1 4830411 4831100 R outer membrane protein complement(4830411..4831100) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256101 NP_463432.1 CDS lplA NC_003197.1 4831413 4832429 R Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins; lipoate-protein ligase A complement(4831413..4832429) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256102 NP_463433.1 CDS smp NC_003197.1 4832463 4833107 R membrane protein; transcribed divergently from serB; membrane protein complement(4832463..4833107) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256103 NP_463434.1 CDS serB NC_003197.1 4833224 4834192 D catalyzes the formation of serine from O-phosphoserine; 3-phosphoserine phosphatase 4833224..4834192 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256104 NP_463435.1 CDS radA NC_003197.1 4834276 4835658 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 4834276..4835658 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256105 NP_463436.4 CDS nadR NC_003197.1 4835782 4837041 D catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; also has a regulatory function; multifunctional DNA-binding transcriptional repressor/NMN adenylyltransferase/ribosylnicotinamide kinase 4835782..4837041 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256106 NP_463437.1 CDS yjjK NC_003197.1 4837159 4838826 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(4837159..4838826) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256107 NP_463438.2 CDS slt NC_003197.1 4839035 4840972 D catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; lytic murein transglycosylase 4839035..4840972 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256108 NP_463439.1 CDS trpR NC_003197.1 4841030 4841356 D When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 4841030..4841356 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256109 NP_463440.1 CDS yjjX NC_003197.1 4841458 4841973 R pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; non-canonical purine NTP phosphatase complement(4841458..4841973) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256110 NP_463441.1 CDS gpmB NC_003197.1 4842022 4842669 D catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; phosphoglycerate mutase 4842022..4842669 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256111 NP_463442.1 CDS rob NC_003197.1 4842666 4843535 R transcriptional regulator complement(4842666..4843535) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256112 NP_463443.1 CDS creA NC_003197.1 4843747 4844220 D catabolite regulation protein A 4843747..4844220 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256113 NP_463444.1 CDS creB NC_003197.1 4844233 4844922 D response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 4844233..4844922 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256114 NP_463445.1 CDS creC NC_003197.1 4844922 4846346 D part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 4844922..4846346 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256115 NP_463446.1 CDS creD NC_003197.1 4846404 4847753 D inner membrane protein 4846404..4847753 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256116 NP_463447.1 CDS sthE NC_003197.1 4847811 4848896 R major fimbrial subunit complement(4847811..4848896) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256117 NP_463448.1 CDS sthD NC_003197.1 4848937 4849494 R fimbrial subunit complement(4848937..4849494) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256118 NP_463449.1 CDS sthB NC_003197.1 4849512 4852049 R fimbrial usher protein complement(4849512..4852049) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256119 NP_463450.1 CDS sthA NC_003197.1 4852095 4852778 R fimbrial chaperone complement(4852095..4852778) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256120 NP_463451.1 CDS STM4595 NC_003197.1 4852849 4853394 R fimbrial chaperone complement(4852849..4853394) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256121 NP_463452.1 CDS STM4596 NC_003197.1 4853733 4854404 R inner membrane protein complement(4853733..4854404) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256122 NP_463453.1 CDS STM4597 NC_003197.1 4854789 4855103 R periplasmic protein complement(4854789..4855103) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256123 NP_463454.1 CDS arcA NC_003197.1 4855370 4856086 R two-component response regulator complement(4855370..4856086) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256124 NP_463455.1 CDS yjjY NC_003197.1 4856182 4856322 D inner membrane protein 4856182..4856322 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256125 NP_463456.1 CDS lasT NC_003197.1 4856722 4857408 D member of the SPOUT superfamily of methyltransferases; tRNA/rRNA methyltransferase 4856722..4857408 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256126 NP_490493.1 CDS PSLT001 NC_003277.1 94 378 D putative cytoplasmic protein 94..378 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256238 NP_490494.1 CDS PSLT002 NC_003277.1 712 1155 D putative phospholipase D 712..1155 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256237 NP_490495.1 CDS repC NC_003277.1 1334 1600 D replication protein 1334..1600 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256235 NP_490496.1 CDS repA3 NC_003277.1 1723 1845 D DNA replication protein 1723..1845 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256236 NP_490497.1 CDS tap NC_003277.1 1850 1927 D acts to regulate the expression of the plasmid replication protein RepA in the IncFII plasmid group; RepA leader peptide Tap 1850..1927 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256234 NP_490498.2 CDS repA NC_003277.1 1920 2789 D RepA; replication protein 1920..2789 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256233 NP_490499.1 CDS PSLT007 NC_003277.1 3730 3870 D putative outer membrane protein 3730..3870 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256232 NP_490500.1 CDS srgC NC_003277.1 3967 4725 R sdiA-regulated gene; putative bacterial helix-turn-helix proteins; member of araC family; rcK; putative regulatory protein complement(3967..4725) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256231 NP_490501.1 CDS rcK NC_003277.1 4992 5549 R srgB; resistance to complement killing complement(4992..5549) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256230 NP_490502.1 CDS srgB NC_003277.1 5639 6538 R sdiA-regulated gene; srgA; putative outer membrane protein complement(5639..6538) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256228 NP_490503.1 CDS srgA NC_003277.1 6671 7324 R sdiA-regulated gene; orf7; putative thiol-disulfide isomerase or thioredoxin complement(6671..7324) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256229 NP_490504.1 CDS orf7 NC_003277.1 7569 7919 R luxR family; pefI; putative regulatory protein complement(7569..7919) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256227 NP_490505.1 CDS pefI NC_003277.1 7904 8116 R plasmid-encoded fimbriae; orf6; regulator complement(7904..8116) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256226 NP_490506.1 CDS orf6 NC_003277.1 8548 9423 R orf5; putative outer membrane protein complement(8548..9423) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256224 NP_490507.1 CDS orf5 NC_003277.1 9676 10233 R pefD; putative outer membrane protein complement(9676..10233) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256225 NP_490508.1 CDS pefD NC_003277.1 10248 10940 R plasmid-encoded fimbriae; pefC; chaperone complement(10248..10940) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256223 NP_490509.1 CDS pefC NC_003277.1 10933 13341 R plasmid-encoded fimbriae; pefA; usher protein complement(10933..13341) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256222 NP_490510.1 CDS pefA NC_003277.1 13569 14087 R plasmid-encoded fimbriae; pefB; major fimbrial subunit complement(13569..14087) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256221 NP_490511.1 CDS pefB NC_003277.1 14362 14664 R plasmid-encoded fimbriae; regulatory protein complement(14362..14664) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256219 NP_490513.1 CDS repA2 NC_003277.1 16636 17625 R DNA replication protein complement(16636..17625) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256216 NP_490514.1 CDS PSLT024 NC_003277.1 17369 17677 D hypothetical protein 17369..17677 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256217 NP_490515.1 CDS PSLT025 NC_003277.1 18119 18415 R putative cytoplasmic protein complement(18119..18415) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256215 NP_490516.1 CDS PSLT026 NC_003277.1 18899 19420 R putative periplasmic protein complement(18899..19420) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256213 NP_490517.1 CDS ccdA NC_003277.1 20096 20314 D toxin addiction system; plasmid maintenance protein CcdA 20096..20314 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256214 NP_490518.1 CDS ccdB NC_003277.1 20316 20621 D controlled cell death protein; post-segregation toxin; toxin addiction system; plasmid maintenance protein CcdB 20316..20621 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256209 NP_490519.1 CDS PSLT029 NC_003277.1 20623 20913 D putative cytoplasmic protein 20623..20913 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256212 NP_490520.1 CDS PSLT030 NC_003277.1 20910 21431 D putative cytoplasmic protein 20910..21431 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256211 NP_490521.1 CDS rsdB NC_003277.1 21466 22248 D resolvase 21466..22248 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256210 NP_490522.1 CDS PSLT032 NC_003277.1 22257 22808 D putative diguanylate cyclase/phosphodiesterase 22257..22808 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256207 NP_861530.1 CDS PSLT032.1N NC_003277.1 22974 23483 D similar to orf from Salmonella enteritidis virulence plasmid; hypothetical protein 22974..23483 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256208 NP_490523.1 CDS PSLT033 NC_003277.1 23477 23962 D putative inner membrane protein 23477..23962 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256205 NP_490526.1 CDS PSLT036 NC_003277.1 25877 26140 D IS200-like; putative transposase 25877..26140 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256203 NP_490527.1 CDS spvD NC_003277.1 26267 26917 R Salmonella typhimurium plasmid virulence protein; hydrophilic protein complement(26267..26917) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256202 NP_490528.1 CDS spvC NC_003277.1 27178 27903 R Salmonella typhimurium plasmid virulence protein; hydrophilic protein complement(27178..27903) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256201 NP_490529.1 CDS spvB NC_003277.1 28191 29966 R Salmonella typhimurium plasmid virulence protein; hydrophilic protein complement(28191..29966) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256199 NP_490530.1 CDS spvA NC_003277.1 30148 30915 R Salmonella typhimurium plasmid virulence protein; spvR; outer membrane protein complement(30148..30915) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256200 NP_490531.1 CDS spvR NC_003277.1 31427 32320 R Salmonella typhimurium plasmid virulence protein; lysR family; regulator of spv operon complement(31427..32320) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256197 NP_490532.1 CDS PSLT042 NC_003277.1 32929 33966 D putative integrase protein 32929..33966 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256195 NP_490533.1 CDS PSLT043 NC_003277.1 34155 35180 R similar to ExeA protein; type II secretion system protein complement(34155..35180) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256196 NP_490534.1 CDS rlgA NC_003277.1 35113 36777 R putative integrase protein complement(35113..36777) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256194 NP_490535.1 CDS PSLT045 NC_003277.1 36761 37321 R putative resolvase complement(36761..37321) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256192 NP_490536.1 CDS PSLT046 NC_003277.1 37528 38268 R putative carbonic anhydrase complement(37528..38268) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256193 NP_490537.1 CDS PSLT047 NC_003277.1 38923 39411 R putative cytoplasmic protein complement(38923..39411) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256191 NP_490538.1 CDS tlpA NC_003277.1 39670 40785 D alpha-helical coiled-coil protein 39670..40785 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256190 NP_861531.1 CDS PSLT050.1N NC_003277.1 41390 41806 D similar to orf40 from Salmonella enteritidis virulence plasmid; hypothetical protein 41390..41806 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256187 NP_861532.1 CDS PSLT050.2N NC_003277.1 41908 42429 D hypothetical protein 41908..42429 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256188 NP_490541.1 CDS PSLT051 NC_003277.1 42461 43402 R putative cytoplasmic protein complement(42461..43402) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256185 NP_490542.1 CDS parA NC_003277.1 43817 45022 D plasmid partition protein A 43817..45022 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256186 NP_490543.1 CDS parB NC_003277.1 45019 45996 D plasmid partition protein B 45019..45996 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256184 NP_490544.1 CDS umuC NC_003277.1 46078 47352 R binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC complement(46078..47352) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256183 NP_490545.1 CDS samA NC_003277.1 47352 47774 R protection from mutagenesis by UV and mutagens; similar to umuDC operon; SamA complement(47352..47774) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256182 NP_490546.1 CDS PSLT056 NC_003277.1 48285 48755 D putative cytoplasmic protein 48285..48755 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256180 NP_490547.1 CDS PSLT057 NC_003277.1 48748 49104 D putative cytoplasmic protein 48748..49104 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256181 NP_490548.1 CDS PSLT059 NC_003277.1 49486 50166 D putative methylase 49486..50166 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256178 NP_490549.1 CDS PSLT060 NC_003277.1 50166 50387 D putative cytoplasmic protein 50166..50387 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256177 NP_861533.1 CDS PSLT060.1N NC_003277.1 50443 50856 D hypothetical protein 50443..50856 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256175 NP_490550.1 CDS PSLT061 NC_003277.1 50928 51692 D putative inner membrane protein 50928..51692 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256176 NP_490551.1 CDS PSLT062 NC_003277.1 52188 52622 D putative cytoplasmic protein 52188..52622 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256173 NP_490552.1 CDS PSLT063 NC_003277.1 52689 53123 D putative cytoplasmic protein 52689..53123 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256174 NP_490553.1 CDS PSLT064 NC_003277.1 53359 53682 D similar to DNA polymerase III theta subunit; putative inner membrane protein 53359..53682 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256172 NP_490554.1 CDS ssbB NC_003277.1 54401 54919 D single-strand DNA binding protein 54401..54919 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256170 NP_490555.1 CDS PSLT067 NC_003277.1 54974 55216 D putative cytoplasmic protein 54974..55216 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256168 NP_490556.1 CDS PSLT068 NC_003277.1 55285 57282 D putative ParB-like nuclease 55285..57282 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256169 NP_490557.1 CDS psiB NC_003277.1 57322 57756 D plasmid SOS inhibition; plasmid SOS inhibition protein B 57322..57756 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256167 NP_490558.1 CDS psiA NC_003277.1 57753 58490 D PsiA; plasmid SOS inhibition protein A 57753..58490 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256166 NP_490559.1 CDS PSLT072 NC_003277.1 60129 60599 R putative transglycosylase complement(60129..60599) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256164 NP_490560.1 CDS traM NC_003277.1 61014 61394 D conjugative transfer; DNA-binding protein; conjugal transfer protein TraM 61014..61394 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256163 NP_490561.1 CDS traJ NC_003277.1 61587 62273 D conjugative transfer; positively regulates transfer operon transcription; negatively regulated by finP; positively regulated by Lrp; regulatory protein 61587..62273 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256127 NP_490562.1 CDS traY NC_003277.1 62274 62594 D conjugative transfer; promotes nicking at oriT and transfer operon transcription; conjugal transfer protein TraY 62274..62594 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256161 NP_490563.1 CDS traA NC_003277.1 62636 62998 D conjugative transfer; pilin; conjugal transfer pilin subunit TraA 62636..62998 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256159 NP_490564.1 CDS traL NC_003277.1 63013 63324 D conjugative transfer; conjugal transfer pilus assembly protein TraL 63013..63324 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256160 NP_490565.1 CDS traE NC_003277.1 63346 63912 D conjugative transfer; conjugal transfer pilus assembly protein TraE 63346..63912 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256158 NP_490566.1 CDS traK NC_003277.1 63899 64639 D conjugative transfer; conjugal transfer protein TraK 63899..64639 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256157 NP_490567.1 CDS traB NC_003277.1 64639 66060 D conjugative transfer; conjugal transfer pilus assembly protein TraB 64639..66060 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256155 NP_490568.1 CDS traP NC_003277.1 66050 66646 D conjugal transfer protein TraP 66050..66646 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256156 NP_490569.1 CDS trbD NC_003277.1 66624 66869 D conjugal transfer protein TrbD 66624..66869 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256154 NP_490570.1 CDS traV NC_003277.1 66866 67381 D conjugative transfer; putative outer membrane lipoprotein; conjugal transfer protein TraV 66866..67381 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256153 NP_490571.1 CDS traR NC_003277.1 67516 67737 D conjugal transfer protein TraR 67516..67737 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256151 NP_490572.1 CDS PSLT087 NC_003277.1 67730 68197 D conjugative transfer; OrfG2 67730..68197 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256152 NP_490573.1 CDS traC NC_003277.1 68593 71241 D similar to VirB4; conjugal transfer ATP-binding protein TraC 68593..71241 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256150 NP_490574.1 CDS trbI NC_003277.1 71216 71602 D conjugative transfer; conjugal transfer protein TrbI 71216..71602 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256149 NP_490575.1 CDS traW NC_003277.1 71599 72231 D conjugative transfer; conjugal transfer pilus assembly protein TraW 71599..72231 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256147 NP_490576.1 CDS traU NC_003277.1 72228 73220 D conjugative transfer; conjugal transfer pilus assembly protein TraU 72228..73220 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256148 NP_490577.1 CDS PSLT093 NC_003277.1 73239 73547 D conjugative transfer; OrfF 73239..73547 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256146 NP_490578.1 CDS trbC NC_003277.1 73532 74170 D conjugative transfer; conjugal transfer pilus assembly protein TrbC 73532..74170 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256145 NP_861534.1 CDS PSLT094.1N NC_003277.1 74207 74626 D hypothetical protein 74207..74626 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256143 NP_490579.1 CDS traN NC_003277.1 74623 76449 D TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell; conjugal transfer mating pair stabilization protein TraN 74623..76449 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256144 NP_490580.1 CDS trbE NC_003277.1 76460 76675 D conjugal transfer protein TrbE 76460..76675 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256142 NP_490581.1 CDS traF NC_003277.1 76687 77436 D type IV secretion system pilus assembly protein; similar to F plasmid TraF; conjugal pilus assembly protein TraF 76687..77436 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256140 NP_490582.1 CDS traQ NC_003277.1 77650 77943 D conjugative transfer; conjugal transfer pilin chaperone TraQ 77650..77943 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256141 NP_490583.1 CDS trbB NC_003277.1 77930 78478 D conjugal transfer protein TrbB 77930..78478 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256139 NP_490584.1 CDS traH NC_003277.1 78468 79850 D conjugative transfer; conjugal transfer pilus assembly protein TraH 78468..79850 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256138 NP_490585.1 CDS traG NC_003277.1 79847 82669 D conjugative transfer; conjugal transfer mating pair stabilization protein TraG 79847..82669 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256136 NP_490586.1 CDS traS NC_003277.1 82685 83179 D conjugative transfer; entry exclusion protein 82685..83179 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256137 NP_490587.1 CDS traT NC_003277.1 83215 83946 D conjugative transfer; conjugal transfer surface exclusion protein TraT 83215..83946 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256135 NP_490588.1 CDS traD NC_003277.1 84323 86566 D type IV secretion system coupling protein; similar to F plasmid TraD; conjugal transfer protein TraD 84323..86566 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256134 NP_490589.1 CDS trbH NC_003277.1 86566 87285 D conjugative transfer protein 86566..87285 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256132 NP_490590.1 CDS PSLT106 NC_003277.1 86575 86973 R stability determinant protein; plasmid maintenance protein complement(86575..86973) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256133 NP_490591.1 CDS PSLT107 NC_003277.1 86973 87203 R putative cytoplasmic protein complement(86973..87203) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256131 NP_490592.1 CDS traI NC_003277.1 87282 92540 D cleaves origin of transfer and unwinds; oriT relaxase; conjugal transfer nickase/helicase TraI 87282..92540 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256130 NP_490593.1 CDS traX NC_003277.1 92560 93300 D conjugative transfer; conjugal transfer pilus acetylation protein TraX 92560..93300 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256128 NP_490594.1 CDS finO NC_003277.1 93355 93918 D conjugative transfer; srgC; conjugal transfer fertility inhibition protein FinO 93355..93918 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256129 STM0250 tRNA ileV NC_003197.1 290790 290866 D tRNA-Ile 290790..290866 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251768 STM0251 tRNA alaV NC_003197.1 290976 291051 D tRNA-Ala 290976..291051 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251769 STM0254 tRNA aspU NC_003197.1 294828 294904 D tRNA-Asp 294828..294904 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251772 STM0265 tRNA aspV NC_003197.1 304267 304343 D tRNA-Asp 304267..304343 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251783 STM0323 tRNA thrW NC_003197.1 368796 368871 D tRNA-Thr 368796..368871 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251842 STM0553 tRNA argU NC_003197.1 613558 613634 D tRNA-Arg 613558..613634 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252073 STM05559.T1 tRNA STM05559.T1 NC_003197.1 617984 618056 D tRNA-OTHER 617984..618056 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 2673761 STM0673 tRNA glnX NC_003197.1 738008 738082 R tRNA-Gln complement(738008..738082) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252193 STM0674 tRNA glnV NC_003197.1 738126 738200 R tRNA-Gln complement(738126..738200) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252194 STM0675 tRNA metU NC_003197.1 738247 738323 R tRNA-Met complement(738247..738323) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252195 STM0676 tRNA glnW NC_003197.1 738339 738413 R tRNA-Gln complement(738339..738413) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252196 STM0677 tRNA glnU NC_003197.1 738449 738523 R tRNA-Gln complement(738449..738523) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252197 STM0678 tRNA leuW NC_003197.1 738547 738631 R tRNA-Leu complement(738547..738631) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252198 STM0679 tRNA metT NC_003197.1 738640 738716 R tRNA-Met complement(738640..738716) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252199 STM0751 tRNA lysT NC_003197.1 818778 818853 D tRNA-Lys 818778..818853 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252271 STM0752 tRNA valT NC_003197.1 818985 819060 D tRNA-Val 818985..819060 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252272 STM0753 tRNA lysW NC_003197.1 819064 819139 D tRNA-Lys 819064..819139 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252273 STM0754 tRNA lysY NC_003197.1 819189 819264 D tRNA-Lys 819189..819264 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252274 STM0755 tRNA lysZ NC_003197.1 819399 819474 D tRNA-Lys 819399..819474 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252275 STM0949 tRNA serW NC_003197.1 1027443 1027530 R tRNA-Ser complement(1027443..1027530) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252468 STM1086 tRNA serT NC_003197.1 1175322 1175409 D tRNA-Ser 1175322..1175409 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252604 STM1134 tRNA serX NC_003197.1 1224742 1224829 R tRNA-Ser complement(1224742..1224829) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252652 STM1247 tRNA STM1247 NC_003197.1 1333214 1333290 D tRNA-Arg 1333214..1333290 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252765 STM1262 tRNA STM1262 NC_003197.1 1345652 1345728 D tRNA-Arg 1345652..1345728 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252780 STM1423 tRNA valW NC_003197.1 1501634 1501710 R tRNA-Val complement(1501634..1501710) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252941 STM1424 tRNA valV NC_003197.1 1501734 1501810 R tRNA-Val complement(1501734..1501810) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1252942 STM1757 tRNA tyrT NC_003197.1 1852569 1852653 D tRNA-Tyr 1852569..1852653 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253276 STM1759 tRNA tyrV NC_003197.1 1852858 1852942 D tRNA-Tyr 1852858..1852942 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253278 STM1942 tRNA leuZ NC_003197.1 2035362 2035448 R tRNA-Leu complement(2035362..2035448) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253463 STM1943 tRNA cysT NC_003197.1 2035460 2035533 R tRNA-Cys complement(2035460..2035533) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253464 STM1944 tRNA glyW NC_003197.1 2035586 2035661 R tRNA-Gly complement(2035586..2035661) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253465 STM2000 tRNA serU NC_003197.1 2082173 2082262 R tRNA-Ser complement(2082173..2082262) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253521 STM2002 tRNA asnT NC_003197.1 2083249 2083324 D tRNA-Asn 2083249..2083324 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253523 STM2004 tRNA asnT NC_003197.1 2084219 2084294 D tRNA-Asn 2084219..2084294 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253525 STM2012 tRNA asnW NC_003197.1 2094161 2094236 R tRNA-Asn complement(2094161..2094236) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253533 STM2014 tRNA asnU NC_003197.1 2095994 2096069 D tRNA-Asn 2095994..2096069 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253535 STM2229 tRNA tRNAPro2 NC_003197.1 2330754 2330830 D tRNA-Pro 2330754..2330830 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253751 STM2394 tRNA argW NC_003197.1 2505824 2505898 D tRNA-Arg 2505824..2505898 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253916 STM2411 tRNA alaX NC_003197.1 2528938 2529013 R tRNA-Ala complement(2528938..2529013) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253933 STM2412 tRNA alaW NC_003197.1 2529056 2529131 R tRNA-Ala complement(2529056..2529131) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253934 STM2416 tRNA valU NC_003197.1 2531837 2531912 D tRNA-Val 2531837..2531912 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253938 STM2417 tRNA valX NC_003197.1 2531958 2532033 D tRNA-Val 2531958..2532033 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253939 STM2418 tRNA valY NC_003197.1 2532075 2532150 D tRNA-Val 2532075..2532150 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253940 STM2419 tRNA lysV NC_003197.1 2532155 2532230 D tRNA-Lys 2532155..2532230 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1253941 STM2615 tRNA STM2615 NC_003197.1 2761646 2761722 R tRNA-Arg complement(2761646..2761722) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254138 STM2658 tRNA gltW NC_003197.1 2799958 2800033 R tRNA-Glu complement(2799958..2800033) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254181 STM2821 tRNA STM2821 NC_003197.1 2969927 2970003 R tRNA-Arg complement(2969927..2970003) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254344 STM2822 tRNA STM2822 NC_003197.1 2970197 2970273 R tRNA-Arg complement(2970197..2970273) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254345 STM2823 tRNA STM2823 NC_003197.1 2970336 2970412 R tRNA-Arg complement(2970336..2970412) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254346 STM2824 tRNA STM2824 NC_003197.1 2970475 2970551 R tRNA-Arg complement(2970475..2970551) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254347 STM2825 tRNA STM2825 NC_003197.1 2970555 2970647 R tRNA-Ser complement(2970555..2970647) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254348 STM2989 tRNA metZ NC_003197.1 3141064 3141140 D tRNA-Met 3141064..3141140 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254512 STM2990 tRNA metW NC_003197.1 3141170 3141246 D tRNA-Met 3141170..3141246 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254513 STM3037 tRNA glyU NC_003197.1 3197422 3197495 R tRNA-Gly complement(3197422..3197495) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254560 STM3116 tRNA pheV NC_003197.1 3276146 3276221 D tRNA-Phe 3276146..3276221 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254639 STM3213 tRNA STM3213 NC_003197.1 3379004 3379079 D tRNA-Met 3379004..3379079 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254736 STM3289 tRNA metY NC_003197.1 3458503 3458579 R tRNA-Met complement(3458503..3458579) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254812 STM3292 tRNA leuU NC_003197.1 3461752 3461838 R tRNA-Leu complement(3461752..3461838) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254815 STM3394 tRNA thrV NC_003197.1 3566782 3566857 R tRNA-Thr complement(3566782..3566857) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254917 STM3397 tRNA STM3397 NC_003197.1 3570305 3570380 R tRNA-Glu complement(3570305..3570380) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254920 STM3634 tRNA proK NC_003197.1 3820409 3820485 R tRNA-Pro complement(3820409..3820485) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255158 STM3751 tRNA selC NC_003197.1 3948576 3948670 D tRNA-Sec 3948576..3948670 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255275 STM3890 tRNA gltU NC_003197.1 4101759 4101834 D tRNA-Glu 4101759..4101834 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255417 STM3895 tRNA aspT NC_003197.1 4105283 4105359 D tRNA-Asp 4105283..4105359 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255421 STM3896 tRNA trpT NC_003197.1 4105368 4105443 D tRNA-Trp 4105368..4105443 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255422 STM3931 tRNA argX NC_003197.1 4140908 4140984 D tRNA-Arg 4140908..4140984 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255457 STM3932 tRNA hisR NC_003197.1 4141039 4141114 D tRNA-His 4141039..4141114 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255458 STM3933 tRNA leuT NC_003197.1 4141135 4141221 D tRNA-Leu 4141135..4141221 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255459 STM3934 tRNA proM NC_003197.1 4141264 4141340 D tRNA-Pro 4141264..4141340 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255460 STM3989 tRNA ileT NC_003197.1 4197670 4197746 D tRNA-Ile 4197670..4197746 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255515 STM3990 tRNA alaT NC_003197.1 4197858 4197933 D tRNA-Ala 4197858..4197933 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255516 STM4133 tRNA ileU NC_003197.1 4352741 4352817 D tRNA-Ile 4352741..4352817 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255659 STM4134 tRNA STM4134 NC_003197.1 4352929 4353004 D tRNA-Ala 4352929..4353004 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255660 STM4142 tRNA thrU NC_003197.1 4360046 4360121 D tRNA-Thr 4360046..4360121 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255668 STM4143 tRNA tyrU NC_003197.1 4360130 4360214 D tRNA-Tyr 4360130..4360214 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255669 STM4144 tRNA glyT NC_003197.1 4360331 4360405 D tRNA-Gly 4360331..4360405 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255670 STM4145 tRNA thrT NC_003197.1 4360412 4360487 D tRNA-Thr 4360412..4360487 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255671 STM4178 tRNA gltV NC_003197.1 4396303 4396378 D tRNA-Glu 4396303..4396378 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255704 STM4321 tRNA pheR NC_003197.1 4566579 4566654 R tRNA-Phe complement(4566579..4566654) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255847 STM4352 tRNA glyV NC_003197.1 4596420 4596495 D tRNA-Gly 4596420..4596495 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255878 STM4353 tRNA glyX NC_003197.1 4596652 4596727 D tRNA-Gly 4596652..4596727 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255879 STM4354 tRNA glyY NC_003197.1 4596884 4596959 D tRNA-Gly 4596884..4596959 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255880 STM4487 tRNA leuX NC_003197.1 4731011 4731095 D tRNA-Leu 4731011..4731095 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256013 STM4553 tRNA leuV NC_003197.1 4810629 4810715 R tRNA-Leu complement(4810629..4810715) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256079 STM4554 tRNA leuP NC_003197.1 4810747 4810833 R tRNA-Leu complement(4810747..4810833) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256080 STM4555 tRNA leuQ NC_003197.1 4810861 4810947 R tRNA-Leu complement(4810861..4810947) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1256081 STM0249 rRNA rrsH NC_003197.1 289189 290732 D 16S ribosomal RNA 289189..290732 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251767 STM0252 rRNA rrlH NC_003197.1 291244 294336 D 23S ribosomal RNA 291244..294336 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251770 STM0253 rRNA rrfH NC_003197.1 294519 294640 D 5S ribosomal RNA 294519..294640 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1251771 STM2656 rRNA rrfG NC_003197.1 2796440 2796561 R 5S ribosomal RNA complement(2796440..2796561) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254179 STM2657 rRNA rrlG NC_003197.1 2796755 2799764 R 23S ribosomal RNA complement(2796755..2799764) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254180 STM2659 rRNA rrsG NC_003197.1 2800118 2801660 R 16S ribosomal RNA complement(2800118..2801660) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254182 STM3393 rRNA rrfF NC_003197.1 3566622 3566743 R 5S ribosomal RNA complement(3566622..3566743) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254916 STM3395 rRNA rrfD NC_003197.1 3566867 3566988 R 5S ribosomal RNA complement(3566867..3566988) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254918 STM3396 rRNA rrlD NC_003197.1 3567078 3570071 R 23S ribosomal RNA complement(3567078..3570071) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254919 STM3398 rRNA rrsD NC_003197.1 3570463 3572006 R 16S ribosomal RNA complement(3570463..3572006) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1254921 STM3889 rRNA rrsC NC_003197.1 4100132 4101675 D 16S ribosomal RNA 4100132..4101675 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255416 STM3891 rRNA rrlC NC_003197.1 4102028 4105021 D 23S ribosomal RNA 4102028..4105021 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255418 STM3894 rRNA rrfC NC_003197.1 4105111 4105230 D 5S ribosomal RNA 4105111..4105230 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255420 STM3988 rRNA rrsA NC_003197.1 4196059 4197600 D 16S ribosomal RNA 4196059..4197600 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255514 STM3991 rRNA rrlA NC_003197.1 4198116 4201110 D 23S ribosomal RNA 4198116..4201110 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255517 STM3992 rRNA rrfA NC_003197.1 4201302 4201423 D 5S ribosomal RNA 4201302..4201423 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255518 STM4132 rRNA rrsB NC_003197.1 4351130 4352673 D 16S ribosomal RNA 4351130..4352673 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255658 STM4135 rRNA rrlB NC_003197.1 4353187 4356180 D 23S ribosomal RNA 4353187..4356180 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255661 STM4136 rRNA rrfB NC_003197.1 4356373 4356493 D 5S ribosomal RNA 4356373..4356493 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255662 STM4177 rRNA rrsE NC_003197.1 4394675 4396219 D 16S ribosomal RNA 4394675..4396219 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255703 STM4179 rRNA rrlE NC_003197.1 4396611 4399604 D 23S ribosomal RNA 4396611..4399604 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255705 STM4180 rRNA rrfE NC_003197.1 4399797 4399918 D 5S ribosomal RNA 4399797..4399918 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 1255706