; oligo-analysis -quick -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i /software/CC/bio/opt/rsat/rsa-tools//public_html/data/genomes/Schizosaccharomyces_octosporus_yFS286_MO/genome/Schizosaccharomyces_octosporus_yFS286_MO_start_codons.wc -o /software/CC/bio/opt/rsat/rsa-tools//public_html/data/genomes/Schizosaccharomyces_octosporus_yFS286_MO/genome/Schizosaccharomyces_octosporus_yFS286_MO_start_codon_frequencies ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.163 ; Quick counting mode ; Oligomer length 3 ; Input file $RSAT/public_html/data/genomes/Schizosaccharomyces_octosporus_yFS286_MO/genome/Schizosaccharomyces_octosporus_yFS286_MO_start_codons.wc ; Input format wc ; Output file $RSAT/public_html/data/genomes/Schizosaccharomyces_octosporus_yFS286_MO/genome/Schizosaccharomyces_octosporus_yFS286_MO_start_codon_frequencies ; Count overlapping matches ; Counted on a single strand ; Background model Bernoulli ; Background estimation method ; Sequence type DNA ; Nb of sequences 0 ; Sum of sequence lengths 0 ; discarded residues NA (quick mode) (other letters than ACGT) ; discarded occurrences NA (quick mode) (contain discarded residues) ; nb possible positions NA (quick mode) ; total oligo occurrences 4921 ; alphabet size 4 ; nb possible oligomers 64 ; oligomers tested for significance 0 ; Threshold values ; Parameter Lower Upper ; ms_P none 1 ; occ_P none 1 ; Sequences: ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 obs_freq observed relative frequency ; 4 occ observed occurrences #seq id obs_freq occ atg atg 0.9957325746799 4900 aaa aaa 0.0010160536476 5 acc acc 0.0006096321886 3 aca aca 0.0004064214591 2 tat tat 0.0004064214591 2 gaa gaa 0.0002032107295 1 cca cca 0.0002032107295 1 gca gca 0.0002032107295 1 ttg ttg 0.0002032107295 1 cac cac 0.0002032107295 1 aac aac 0.0002032107295 1 agc agc 0.0002032107295 1 atc atc 0.0002032107295 1 act act 0.0002032107295 1 ; Host name nic42 ; Job started 2011_11_26.230252 ; Job done 2011_11_26.230253 ; Seconds 0.16