-- dump date 20120504_161413 -- class Genbank::CDS -- table cds_note -- id note YP_004503427.1 SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; TIGRFAM: Chromosomal replication control, initiator DnaA; KEGG: spe:Spro_0032 chromosomal replication initiation protein; HAMAP: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal YP_004503428.1 SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: spe:Spro_0033 DNA polymerase III subunit beta; PFAM: DNA polymerase III, beta chain YP_004503429.1 TIGRFAM: DNA-binding, RecF; HAMAP: DNA replication and repair protein recF; KEGG: spe:Spro_0034 recombination protein F; PFAM: RecF/RecN/SMC protein, N-terminal YP_004503430.1 SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like; TIGRFAM: DNA gyrase, subunit B; KEGG: spe:Spro_0035 DNA gyrase subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal YP_004503431.1 KEGG: spe:Spro_0036 sugar phosphatase; TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3 YP_004503432.1 KEGG: ypz:YPZ3_3509 ornithine cyclodeaminase; PFAM: Ornithine cyclodeaminase/mu-crystallin YP_004503433.1 PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; KEGG: spe:Spro_0037 hypothetical protein YP_004503434.1 KEGG: spe:Spro_0046 hypothetical protein YP_004503435.1 PFAM: Protein of unknown function DUF1375; KEGG: spe:Spro_0047 hypothetical protein YP_004503436.1 PFAM: Heat shock protein Hsp20; KEGG: spe:Spro_0048 heat shock protein IbpA YP_004503437.1 PFAM: Heat shock protein Hsp20; KEGG: spe:Spro_0049 heat shock chaperone IbpB YP_004503438.1 TIGRFAM: YidE/YbjL duplication; HAMAP: transport protein yidE; KEGG: spe:Spro_0050 hypothetical protein; PFAM: YidE/YbjL duplication; Regulator of K+ conductance, C-terminal YP_004503439.1 KEGG: spe:Spro_0053 valine--pyruvate transaminase; PFAM: Aminotransferase, class I/II YP_004503440.1 KEGG: spe:Spro_0054 periplasmic alpha-amylase precursor; PFAM: Glycosyl hydrolase, family 13, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region YP_004503441.1 PFAM: CopG-like DNA-binding; KEGG: spe:Spro_0055 CopG family transcriptional regulator YP_004503442.1 PFAM: Plasmid stabilisation system; KEGG: spe:Spro_0056 plasmid stabilization system protein YP_004503443.1 HAMAP: Glyoxylate/hydroxypyruvate reductase B; KEGG: spe:Spro_0057 NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region YP_004503444.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_0058 major facilitator transporter YP_004503445.1 KEGG: spe:Spro_0059 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase YP_004503446.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: spe:Spro_0060 xylose isomerase domain-containing protein YP_004503447.1 KEGG: spe:Spro_0061 LacI family transcription regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004503448.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Rickettsia 17kDa surface antigen; KEGG: spe:Spro_0062 outer membrane lipoprotein YP_004503449.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_0063 hypothetical protein YP_004503450.1 TIGRFAM: DNA-3-methyladenine glycosylase I; KEGG: spe:Spro_0064 DNA-3-methyladenine glycosylase I; PFAM: Methyladenine glycosylase YP_004503451.1 TIGRFAM: Outer membrane autotransporter barrel; KEGG: spe:Spro_0065 outer membrane autotransporter; PFAM: Autotransporter beta-domain; Lipase, GDSL YP_004503452.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_0068 major facilitator transporter YP_004503453.1 PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, alpha subunit; KEGG: spe:Spro_0069 glycyl-tRNA synthetase subunit alpha YP_004503454.1 TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit; HAMAP: Glycyl-tRNA synthetase beta subunit; KEGG: spe:Spro_0070 glycyl-tRNA synthetase subunit beta YP_004503455.1 PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: din:Selin_2492 filamentation induced by cAMP protein Fic YP_004503456.1 KEGG: spe:Spro_0071 hypothetical protein YP_004503457.1 KEGG: spe:Spro_0072 PTS system mannitol-specific transporter subunit IIC; TIGRFAM: Phosphotransferase system, mannitol-specific enzyme IIC; PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; Phosphotransferase system, EIIC; Phosphotransferase system, lactose/cellobiose-specific IIB subunit YP_004503458.1 HAMAP: Mannitol-1-phosphate 5-dehydrogenase; KEGG: spe:Spro_0073 mannitol-1-phosphate 5-dehydrogenase; PFAM: Mannitol dehydrogenase, C-terminal; Mannitol dehydrogenase, N-terminal YP_004503459.1 PFAM: Mannitol repressor; KEGG: spe:Spro_0074 mannitol repressor protein YP_004503460.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: spe:Spro_0075 lysine exporter protein LysE/YggA YP_004503461.1 KEGG: spe:Spro_0076 transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR YP_004503462.1 KEGG: spe:Spro_0077 hypothetical protein YP_004503463.1 PFAM: Methyltransferase type 11; KEGG: spe:Spro_0078 type 11 methyltransferase YP_004503464.1 PFAM: Molybdenum cofactor sulfurase, C-terminal; Protein of unknown function 3-alpha region; KEGG: spe:Spro_0079 hypothetical protein YP_004503465.1 KEGG: spe:Spro_0080 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004503466.1 PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; KEGG: spe:Spro_0081 superoxide dismutase YP_004503467.1 TIGRFAM: Formate dehydrogenase, subunit FdhD; HAMAP: Protein fdhD; KEGG: spe:Spro_0082 formate dehydrogenase accessory protein; PFAM: Formate dehydrogenase, subunit FdhD YP_004503468.1 PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; manually curated; KEGG: yen:YE4135 formate dehydrogenase-o, major subunit; TIGRFAM: Formate dehydrogenase, alpha subunit, anaerobic; Twin-arginine translocation pathway, signal sequence YP_004503469.1 KEGG: spe:Spro_0085 formate dehydrogenase subunit beta; TIGRFAM: Formate dehydrogenase, beta subunit; PFAM: Formate dehydrogenase, transmembrane; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_004503470.1 TIGRFAM: Formate dehydrogenase, gamma subunit; KEGG: spe:Spro_0086 formate dehydrogenase-O subunit gamma YP_004503471.1 TIGRFAM: Formate dehydrogenase accessory protein; HAMAP: Formate dehydrogenase accessory protein; KEGG: spe:Spro_0087 formate dehydrogenase accessory protein FdhE; PFAM: Formate dehydrogenase accessory protein YP_004503472.1 KEGG: spe:Spro_0088 hypothetical protein YP_004503473.1 PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: spe:Spro_0089 glutathione S-transferase YP_004503474.1 PFAM: Pyridoxal phosphate-dependent transferase; TIGRFAM: L-seryl-tRNA selenium transferase; HAMAP: L-seryl-tRNA(Sec) selenium transferase; KEGG: spe:Spro_0090 selenocysteine synthase YP_004503475.1 KEGG: spe:Spro_0091 selenocysteinyl-tRNA-specific translation factor; TIGRFAM: Translation elongation factor, selenocysteine-specific; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor SelB, winged helix, type 2; Translation elongation factor SelB, winged helix, type 3 YP_004503476.1 PFAM: CopG-like DNA-binding; KEGG: rlt:Rleg2_5345 CopG family transcriptional regulator YP_004503477.1 PFAM: Plasmid stabilisation system; KEGG: rec:RHECIAT_PC0000504 plasmid stabilization protein YP_004503478.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_0092 major facilitator transporter YP_004503479.1 manually curated; KEGG: spe:Spro_0093 hypothetical protein YP_004503480.1 KEGG: spe:Spro_0094 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; ThiJ/PfpI; SMART: Helix-turn-helix, AraC domain YP_004503481.1 PFAM: Isochorismatase-like; KEGG: spe:Spro_0095 isochorismatase hydrolase YP_004503482.1 PFAM: Amidohydrolase 3; KEGG: spe:Spro_0096 deaminase YP_004503483.1 KEGG: spe:Spro_0097 xylulokinase; TIGRFAM: Xylulokinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal YP_004503484.1 PFAM: Xylose isomerase, TIM barrel domain; TIGRFAM: Xylose isomerase, bacterial type; HAMAP: Xylose isomerase; KEGG: spe:Spro_0098 xylose isomerase YP_004503485.1 KEGG: spe:Spro_0099 D-xylose transporter subunit XylF; TIGRFAM: D-xylose ABC transporter, substrate-binding protein; PFAM: Periplasmic binding protein/LacI transcriptional regulator YP_004503486.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, D-xylose, ATP-binding protein; KEGG: spe:Spro_0100 xylose transporter ATP-binding subunit; PFAM: ABC transporter-like YP_004503487.1 PFAM: Bacterial inner-membrane translocator; KEGG: spe:Spro_0101 monosaccharide-transporting ATPase YP_004503488.1 KEGG: spe:Spro_0102 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004503489.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: spe:Spro_0105 LysR family transcriptional regulator YP_004503490.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_0106 cyanate transporter YP_004503491.1 KEGG: spe:Spro_0107 hypothetical protein YP_004503494.1 PFAM: Glycosyltransferase sugar-binding region containing DXD motif; KEGG: ppr:PBPRA0243 hypothetical protein YP_004503495.1 PFAM: Glycosyl transferase, family 2; KEGG: efa:EF_B0049 glycosyl transferase, group 2 family protein YP_004503496.1 PFAM: Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; ABC transporter-like; KEGG: rah:Rahaq_5120 peptidase C39 bacteriocin processing; SMART: ATPase, AAA+ type, core YP_004503497.1 PFAM: Secretion protein HlyD; KEGG: rah:Rahaq_5121 secretion protein HlyD family protein YP_004503499.1 KEGG: pct:PC1_0400 hypothetical protein YP_004503500.1 PFAM: Nucleotidyltransferase; KEGG: pfl:PFL_2430 hypothetical protein YP_004503501.1 KEGG: pam:PANA_1956 EanR; PFAM: Autoinducer-binding; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004503502.1 PFAM: Phosphoglycerate mutase; KEGG: spe:Spro_0117 hypothetical protein YP_004503504.1 KEGG: spe:Spro_0118 hypothetical protein YP_004503505.1 PFAM: Major facilitator superfamily MFS-1; KEGG: amd:AMED_6779 MFS transporter arabinose efflux permease YP_004503506.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bam:Bamb_1994 LysR family transcriptional regulator YP_004503507.1 KEGG: spe:Spro_0124 hypothetical protein YP_004503508.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: spe:Spro_0125 NAD-dependent epimerase/dehydratase YP_004503509.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_0126 LysR family transcriptional regulator YP_004503510.1 KEGG: spe:Spro_0127 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004503511.1 TIGRFAM: Phosphotransferase system, beta-glucoside-specific IIABC component; Phosphotransferase system, glucose-like IIB component; Phosphotransferase system, sugar-specific permease EIIA 1 domain; KEGG: pct:PC1_2439 PTS system, beta-glucoside-specific IIABC subunit; PFAM: Phosphotransferase system, sugar-specific permease EIIA 1 domain; Phosphotransferase system, EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_004503512.1 KEGG: rah:Rahaq_1725 glycoside hydrolase 1; PFAM: Glycoside hydrolase, family 1 YP_004503513.1 PFAM: Carbohydrate-selective porin OprB; KEGG: kpn:KPN_02580 carbohydrate-selective porin YP_004503514.1 SMART: Metal-dependent phosphohydrolase, HD region; KEGG: spe:Spro_0128 metal dependent phosphohydrolase YP_004503515.1 KEGG: spe:Spro_0129 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004503516.1 KEGG: spe:Spro_0130 OsmC family protein; TIGRFAM: Peroxiredoxin, organic hydroperoxide resistance-related; PFAM: Peroxiredoxin, OsmC-like protein YP_004503517.1 PFAM: Sulfatase; Protein of unknown function DUF1705; KEGG: spe:Spro_0131 phosphoethanolamine transferase YP_004503518.1 KEGG: spe:Spro_0132 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region YP_004503519.1 KEGG: spe:Spro_0133 sensory histidine kinase UhpB; PFAM: MASE1; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like YP_004503520.1 KEGG: spe:Spro_0134 regulatory protein UhpC; TIGRFAM: GlpT transporter; PFAM: Major facilitator superfamily MFS-1 YP_004503521.1 KEGG: spe:Spro_0135 hypothetical protein YP_004503522.1 PFAM: Glycoside hydrolase, family 18, catalytic domain; Chitinase A N-terminal; KEGG: spe:Spro_0137 chitinase; SMART: Chitinase II; PKD YP_004503523.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: spe:Spro_0138 extracellular solute-binding protein YP_004503524.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_0139 dipeptide transporter permease DppB YP_004503525.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_0140 dipeptide transporter YP_004503526.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: spe:Spro_0141 dipeptide transporter ATP-binding subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_004503527.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: spe:Spro_0142 dipeptide transporter ATP-binding subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_004503528.1 TIGRFAM: Cellulose synthase operon protein YhjU; KEGG: spe:Spro_0143 hypothetical protein YP_004503529.1 TIGRFAM: Cellulose biosynthesis, BcsF/YhjT; KEGG: spe:Spro_0144 hypothetical protein YP_004503530.1 TIGRFAM: Cellulose biosynthesis protein BcsE; KEGG: spe:Spro_0145 hypothetical protein YP_004503531.1 KEGG: spe:Spro_0146 hypothetical protein YP_004503532.1 TIGRFAM: Cellulose synthase operon protein YhjQ; KEGG: spe:Spro_0147 YhjQ family protein YP_004503533.1 KEGG: spe:Spro_0148 cellulose synthase catalytic subunit; TIGRFAM: Cellulose synthase catalytic subunit (UDP-forming); PFAM: Glycosyl transferase, family 2; Type IV pilus assembly PilZ YP_004503534.1 PFAM: Cellulose synthase BcsB, bacterial; KEGG: spe:Spro_0149 cellulose synthase regulator protein YP_004503535.1 KEGG: spe:Spro_0150 endo-1,4-D-glucanase; PFAM: Glycoside hydrolase, family 8 YP_004503536.1 PFAM: Cellulose synthase operon C, C-terminal; Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: spe:Spro_0151 cellulose synthase subunit BcsC YP_004503537.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; HAMP linker domain; KEGG: spe:Spro_0152 phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted YP_004503538.1 KEGG: spe:Spro_0153 C4-dicarboxylate transporter DctA; HAMAP: C4-dicarboxylate transport protein; PFAM: Sodium:dicarboxylate symporter YP_004503539.1 PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: spe:Spro_0154 peptidase M16 domain-containing protein YP_004503540.1 PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: spe:Spro_0155 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004503541.1 KEGG: spe:Spro_0156 ATP-dependent DNA helicase Rep; TIGRFAM: DNA helicase, ATP-dependent, RepA type; PFAM: DNA helicase, UvrD/REP type YP_004503542.1 HAMAP: Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase; KEGG: spe:Spro_0157 guanosine pentaphosphate phosphohydrolase; PFAM: Ppx/GppA phosphatase YP_004503543.1 HAMAP: ATP-dependent RNA helicase rhlB; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; KEGG: spe:Spro_0158 ATP-dependent RNA helicase RhlB; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004503544.1 KEGG: spe:Spro_0159 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain YP_004503545.1 TIGRFAM: Transcription termination factor Rho; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, N-terminal; Rho termination factor, RNA-binding; KEGG: spe:Spro_0160 transcription termination factor Rho; SMART: Cold shock protein; ATPase, AAA+ type, core YP_004503546.1 KEGG: spe:Spro_0161 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; TIGRFAM: Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: Glycosyl transferase, family 4, conserved region YP_004503547.1 PFAM: Lipopolysaccharide biosynthesis; KEGG: spe:Spro_0162 lipopolysaccharide biosynthesis protein WzzE YP_004503548.1 TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: spe:Spro_0163 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_004503549.1 TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: spe:Spro_0164 UDP-N-acetyl-D-mannosamine dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_004503550.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: spe:Spro_0165 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004503551.1 TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; KEGG: spe:Spro_0166 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase YP_004503552.1 KEGG: spe:Spro_0167 TDP-fucosamine acetyltransferase; TIGRFAM: TDP-D-fucosamine acetyltransferase WecD; PFAM: GCN5-related N-acetyltransferase YP_004503553.1 KEGG: spe:Spro_0168 TDP-4-oxo-6-deoxy-D-glucose transaminase; TIGRFAM: TDP-4-keto-6-deoxy-D-glucose transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_004503554.1 PFAM: Polysaccharide biosynthesis protein; KEGG: spe:Spro_0169 polysaccharide biosynthesis protein YP_004503555.1 KEGG: spe:Spro_0170 4-alpha-L-fucosyltransferase; HAMAP: 4-alpha-L-fucosyltransferase; PFAM: 4-alpha-L-fucosyltransferase YP_004503556.1 KEGG: spe:Spro_0171 common antigen polymerase; HAMAP: WzyE; PFAM: WzyE YP_004503557.1 PFAM: Glycosyl transferase WecB/TagA/CpsF; TIGRFAM: Glycosyl transferase WecB/TagA/CpsF; HAMAP: UDP-N-acetyl-D-mannosaminuronic acid transferase; KEGG: spe:Spro_0172 UDP-N-acetyl-D-mannosaminuronic acid transferase YP_004503558.1 PFAM: Amino acid permease-associated region; KEGG: spe:Spro_0173 transport protein YifK YP_004503559.1 KEGG: spe:Spro_0175 protoheme IX biogenesis protein; TIGRFAM: Protohaem IX biosynthesis protein; PFAM: HemY, N-terminal; Tetratricopeptide TPR2 YP_004503560.1 KEGG: spe:Spro_0176 uroporphyrinogen III C-methyltransferase; PFAM: HemX YP_004503561.1 PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; KEGG: spe:Spro_0177 uroporphyrinogen-III synthase YP_004503562.1 TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; HAMAP: Porphobilinogen deaminase; KEGG: spe:Spro_0178 porphobilinogen deaminase; PFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase YP_004503563.1 KEGG: spe:Spro_0179 adenylate cyclase; PFAM: Adenylate cyclase, class-I YP_004503564.1 TIGRFAM: Frataxin-like; HAMAP: Protein cyaY; KEGG: spe:Spro_0180 frataxin-like protein; PFAM: Frataxin-like YP_004503565.1 KEGG: spe:Spro_0181 lipoprotein YP_004503566.1 TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: spe:Spro_0182 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase YP_004503567.1 PFAM: Protein of unknown function DUF484; KEGG: spe:Spro_0183 hypothetical protein YP_004503568.1 TIGRFAM: Tyrosine recombinase XerC; HAMAP: Tyrosine recombinase xerC; KEGG: spe:Spro_0184 site-specific tyrosine recombinase XerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004503569.1 KEGG: spe:Spro_0185 flavin mononucleotide phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004503570.1 KEGG: spe:Spro_0186 DNA-dependent helicase II; TIGRFAM: DNA helicase, ATP-dependent, UvrD type; PFAM: DNA helicase, UvrD/REP type YP_004503571.1 KEGG: spe:Spro_0187 hypothetical protein YP_004503572.1 KEGG: spe:Spro_0188 magnesium/nickel/cobalt transporter CorA; TIGRFAM: Magnesium/cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like YP_004503573.1 KEGG: spe:Spro_0189 ammonia monooxygenase; TIGRFAM: AbrB duplication, membrane protein; PFAM: ammonia monooxygenase YP_004503574.1 KEGG: spe:Spro_0190 transporter DMT superfamily protein; TIGRFAM: RarD protein; PFAM: Protein of unknown function DUF6, transmembrane YP_004503575.1 KEGG: spe:Spro_0191 hypothetical protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily YP_004503576.1 KEGG: spe:Spro_0192 phospholipase A; PFAM: Phospholipase A1 YP_004503577.1 TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: spe:Spro_0193 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain YP_004503578.1 KEGG: spe:Spro_0194 threonine efflux system; TIGRFAM: Homoserine/Threonine efflux protein; PFAM: Lysine exporter protein (LYSE/YGGA) YP_004503579.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: spe:Spro_0195 homoserine/homoserine lactone efflux protein YP_004503580.1 KEGG: spe:Spro_0196 lysophospholipase L2; PFAM: Alpha/beta hydrolase fold-1 YP_004503581.1 KEGG: spe:Spro_0197 sugar phosphatase; TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3 YP_004503582.1 PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: spe:Spro_0198 glycerophosphodiester phosphodiesterase YP_004503583.1 KEGG: spe:Spro_0199 sn-glycerol-3-phosphate transporter; TIGRFAM: Glycerol-3-phosphate transporter; GlpT transporter; PFAM: Major facilitator superfamily MFS-1 YP_004503585.1 TIGRFAM: Anaerobic glycerol-3-phosphate dehydrogenase, A subunit; KEGG: spe:Spro_0200 sn-glycerol-3-phosphate dehydrogenase subunit A; PFAM: FAD dependent oxidoreductase; BFD-like [2Fe-2S]-binding region YP_004503586.1 PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; TIGRFAM: Anaerobic glycerol-3-phosphate dehydrogenase, subunit B; HAMAP: Anaerobic glycerol-3-phosphate dehydrogenase subunit B; KEGG: spe:Spro_0201 anaerobic glycerol-3-phosphate dehydrogenase subunit B YP_004503587.1 KEGG: spe:Spro_0202 sn-glycerol-3-phosphate dehydrogenase subunit C; TIGRFAM: Anaerobic glycerol-3-phosphate dehydrogenase, C subunit; PFAM: Cysteine-rich region, CCG YP_004503588.1 KEGG: spe:Spro_0203 hypothetical protein YP_004503589.1 PFAM: GCN5-related N-acetyltransferase; KEGG: fbl:Fbal_3737 GCN5-related N-acetyltransferase YP_004503590.1 KEGG: spe:Spro_0204 hypothetical protein; TIGRFAM: Protein of unknown function DUF165; PFAM: Protein of unknown function DUF165 YP_004503591.1 KEGG: spe:Spro_0205 SirA family protein; HAMAP: Sulfurtransferase tusA; PFAM: SirA-like YP_004503592.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: spe:Spro_0209 zinc/cadmium/mercury/lead-transporting ATPase; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase YP_004503593.1 PFAM: Peptidase M10, serralysin, C-terminal; Peptidase M10A/M12B, matrixin/adamalysin; Haemolysin-type calcium-binding region; KEGG: spe:Spro_0210 serralysin; SMART: Peptidase, metallopeptidases YP_004503594.1 PFAM: Metalloprotease inhibitor I38; KEGG: spe:Spro_0211 metalloprotease inhibitor I38 YP_004503595.1 PFAM: YhhN-like; KEGG: spe:Spro_0212 YhhN family protein YP_004503596.1 PFAM: Protein of unknown function DUF2500; KEGG: pva:Pvag_3015 hypothetical protein YP_004503597.1 PFAM: Protein of unknown function DUF1145; KEGG: spe:Spro_0219 hypothetical protein YP_004503598.1 TIGRFAM: Conserved hypothetical protein CHP00095; KEGG: spe:Spro_0220 16S rRNA m(2)G966-methyltransferase; PFAM: Protein of unknown function methylase YP_004503599.1 TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: spe:Spro_0221 signal recognition particle-docking protein FtsY; SMART: ATPase, AAA+ type, core YP_004503600.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Cell division protein FtsE; Cell division ATP-binding protein FtsE; KEGG: spe:Spro_0222 cell division protein FtsE; PFAM: ABC transporter-like YP_004503601.1 KEGG: spe:Spro_0223 cell division protein FtsX; TIGRFAM: ABC transporter, FtsX cell division permease; PFAM: Protein of unknown function DUF214, permase predicted YP_004503602.1 KEGG: spe:Spro_0224 RNA polymerase factor sigma-32; TIGRFAM: RNA polymerase sigma factor RpoH, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4 YP_004503603.1 KEGG: spe:Spro_0225 hypothetical protein YP_004503604.1 KEGG: spe:Spro_0226 hypothetical protein YP_004503605.1 KEGG: spe:Spro_0227 GCN5-related N-acetyltransferase YP_004503606.1 PFAM: Extracellular ligand-binding receptor; KEGG: spe:Spro_0228 extracellular ligand-binding receptor YP_004503607.1 PFAM: Bacterial inner-membrane translocator; KEGG: spe:Spro_0229 branched-chain amino acid transporter permease subunit LivH YP_004503608.1 PFAM: Bacterial inner-membrane translocator; KEGG: spe:Spro_0230 leucine/isoleucine/valine transporter permease subunit YP_004503609.1 PFAM: ABC transporter-like; KEGG: spe:Spro_0231 leucine/isoleucine/valine transporter ATP-binding subunit; SMART: ATPase, AAA+ type, core YP_004503610.1 PFAM: ABC transporter-like; KEGG: spe:Spro_0232 leucine/isoleucine/valine transporter ATP-binding subunit; SMART: ATPase, AAA+ type, core YP_004503611.1 KEGG: spe:Spro_0233 GntR family transcriptional regulator; PFAM: Aminotransferase, class I/II YP_004503612.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: spe:Spro_0234 glycerol-3-phosphate transporter periplasmic binding protein YP_004503613.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_0235 glycerol-3-phosphate transporter permease YP_004503614.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_0236 glycerol-3-phosphate transporter membrane protein YP_004503615.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: spe:Spro_0237 glycerol-3-phosphate transporter ATP-binding subunit; SMART: ATPase, AAA+ type, core YP_004503616.1 KEGG: spe:Spro_0238 cytoplasmic glycerophosphodiester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase YP_004503617.1 PFAM: Auxin efflux carrier; KEGG: ypi:YpsIP31758_0261 transporter, auxin efflux carrier (AEC) family protein YP_004503618.1 KEGG: spe:Spro_0239 hypothetical protein YP_004503619.1 KEGG: spe:Spro_0240 carboxylate/amino acid/amine transporter; TIGRFAM: Carboxylate/Amino Acid/Amine Transporter; PFAM: Protein of unknown function DUF6, transmembrane YP_004503620.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_0241 LysR family transcriptional regulator YP_004503621.1 PFAM: Methionine synthase, vitamin-B12 independent; Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal; TIGRFAM: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; HAMAP: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; KEGG: spe:Spro_0242 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase YP_004503622.1 KEGG: spe:Spro_0243 carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase YP_004503623.1 KEGG: spe:Spro_0244 uridine phosphorylase; TIGRFAM: Uridine phosphorylase; PFAM: Nucleoside phosphorylase YP_004503624.1 KEGG: spe:Spro_0245 protein tyrosine/serine phosphatase YP_004503625.1 KEGG: spe:Spro_0246 DedA family protein YP_004503626.1 PFAM: RmuC; KEGG: spe:Spro_0247 hypothetical protein YP_004503627.1 TIGRFAM: UbiE/COQ5 methyltransferase; HAMAP: UbiE/COQ5 methyltransferase; KEGG: spe:Spro_0248 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase YP_004503628.1 PFAM: Sterol-binding; KEGG: spe:Spro_0249 sterol-binding domain-containing protein YP_004503629.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; HAMAP: ubiquinone biosynthesis protein ubiB; KEGG: spe:Spro_0250 ubiquinone biosynthesis protein UbiB; PFAM: ABC-1 YP_004503630.1 KEGG: spe:Spro_0251 twin arginine-targeting protein translocase; TIGRFAM: Twin-arginine translocation protein TatA/E; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106 YP_004503631.1 TIGRFAM: Twin-arginine translocation protein TatB; HAMAP: Twin-arginine translocation protein TatB; KEGG: spe:Spro_0252 twin-arginine translocation protein, TatB subunit; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106 YP_004503632.1 KEGG: spe:Spro_0253 twin-arginine protein translocation system subunit TatC; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent periplasmic protein translocase YP_004503633.1 PFAM: Deoxyribonuclease, TatD-related; KEGG: spe:Spro_0254 DNase TatD YP_004503634.1 KEGG: spe:Spro_0255 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase YP_004503635.1 TIGRFAM: Transcription activator RfaH; PFAM: Transcription antitermination protein, NusG, N-terminal; KEGG: spe:Spro_0256 transcriptional activator RfaH; SMART: Transcription antitermination protein, NusG, N-terminal YP_004503636.1 KEGG: spe:Spro_0257 peptidase E; PFAM: Peptidase S51, dipeptidase E YP_004503637.1 TIGRFAM: Carboxylyase-related; HAMAP: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; KEGG: spe:Spro_0258 3-octaprenyl-4-hydroxybenzoate decarboxylase; PFAM: Carboxylyase-related YP_004503638.1 KEGG: spe:Spro_0259 FMN reductase; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region YP_004503639.1 TIGRFAM: Acetyl-CoA C-acyltransferase FadA; Thiolase; HAMAP: Acetyl-CoA C-acyltransferase FadA; KEGG: spe:Spro_0260 3-ketoacyl-CoA thiolase YP_004503640.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; TIGRFAM: Fatty oxidation complex, alpha subunit FadB; HAMAP: Fatty oxidation complex, alpha subunit FadB; KEGG: spe:Spro_0261 multifunctional fatty acid oxidation complex subunit alpha YP_004503641.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_0262 major facilitator transporter YP_004503642.1 HAMAP: Xaa-Pro dipeptidase; KEGG: spe:Spro_0263 proline dipeptidase; PFAM: Peptidase M24, structural domain YP_004503643.1 KEGG: spe:Spro_0264 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0029, Impact; PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal YP_004503644.1 KEGG: spe:Spro_0265 potassium transporter; TIGRFAM: Potassium uptake protein TrkH; PFAM: Cation transporter YP_004503645.1 KEGG: spe:Spro_0266 protoporphyrinogen oxidase YP_004503646.1 PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: spe:Spro_0267 UDP-N-acetylenolpyruvoylglucosamine reductase YP_004503647.1 TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; Helix-turn-helix biotin operon repressor region; KEGG: spe:Spro_0268 biotin--protein ligase; PFAM: Biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11; Biotin protein ligase, C-terminal YP_004503648.1 PFAM: Phosphoribulokinase/uridine kinase; TIGRFAM: Bacterial pantothenate kinase; HAMAP: Pantothenate kinase; KEGG: spe:Spro_0269 pantothenate kinase YP_004503649.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pct:PC1_0197 GCN5-related N-acetyltransferase YP_004503650.1 KEGG: spe:Spro_4548 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal YP_004503651.1 KEGG: spe:Spro_0271 preprotein translocase subunit SecE; TIGRFAM: SecE subunit of protein translocation complex; PFAM: Protein secE/sec61-gamma protein YP_004503652.1 TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; KEGG: sgl:SG0129 transcription antitermination protein NusG; SMART: Transcription antitermination protein, NusG, N-terminal; KOW YP_004503653.1 TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, N-terminal; Ribosomal protein L11, C-terminal; KEGG: spe:Spro_0273 50S ribosomal protein L11; SMART: Ribosomal protein L11 YP_004503654.1 KEGG: spe:Spro_0274 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1 YP_004503655.1 KEGG: spe:Spro_0275 50S ribosomal protein L10; HAMAP: 50S ribosomal protein L10; PFAM: Ribosomal protein L10 YP_004503656.1 TIGRFAM: Ribosomal protein L7/L12; HAMAP: Ribosomal protein L7/L12; KEGG: spe:Spro_0276 50S ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal YP_004503657.1 TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP: DNA-directed RNA polymerase subunit beta; KEGG: spe:Spro_0277 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 3; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 7 YP_004503658.1 SMART: RNA polymerase, N-terminal; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; KEGG: spe:Spro_0278 DNA-directed RNA polymerase subunit beta'; HAMAP: DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5 YP_004503659.1 PFAM: GCN5-related N-acetyltransferase; KEGG: epy:EpC_11810 GCN5-related N-acetyltransferase YP_004503660.1 KEGG: epy:EpC_11820 hypothetical protein YP_004503661.1 KEGG: epy:EpC_11830 two-component system sensory histidine kinase; PFAM: ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like YP_004503662.1 PFAM: BetR; KEGG: eta:ETA_11350 response regulator receiver YP_004503663.1 KEGG: mxa:MXAN_5464 hypothetical protein YP_004503664.1 KEGG: spe:Spro_0279 thiamine biosynthesis protein ThiH; TIGRFAM: Thiazole biosynthesis ThiH; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM YP_004503665.1 KEGG: spe:Spro_0280 thiazole synthase; HAMAP: Thiazole biosynthesis; PFAM: Thiazole biosynthesis YP_004503666.1 KEGG: spe:Spro_0281 sulfur carrier protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiamineS YP_004503667.1 PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; KEGG: spe:Spro_0282 UBA/ThiF-type NAD/FAD binding protein YP_004503668.1 TIGRFAM: Thiamine monophosphate synthase; HAMAP: Thiamine-phosphate pyrophosphorylase; KEGG: spe:Spro_0283 thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase YP_004503669.1 TIGRFAM: Thiamine biosynthesis protein ThiC; HAMAP: Thiamine biosynthesis protein ThiC; KEGG: spe:Spro_0284 thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC YP_004503670.1 PFAM: Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; KEGG: spe:Spro_0285 anti-RNA polymerase sigma 70 factor YP_004503671.1 HAMAP: NADH pyrophosphatase; KEGG: spe:Spro_0286 NADH pyrophosphatase; PFAM: NUDIX hydrolase domain; NADH pyrophosphatase-like, N-terminal; Zinc ribbon, NADH pyrophosphatase YP_004503672.1 PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: Uroporphyrinogen decarboxylase HemE; HAMAP: Uroporphyrinogen decarboxylase HemE; KEGG: spe:Spro_0287 uroporphyrinogen decarboxylase YP_004503673.1 HAMAP: Endonuclease V; KEGG: spe:Spro_0288 endonuclease V; PFAM: Endonuclease V YP_004503674.1 PFAM: Protein of unknown function DUF416; KEGG: spe:Spro_0289 hypothetical protein YP_004503675.1 KEGG: spe:Spro_0290 transcriptional regulator HU subunit alpha; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_004503676.1 PFAM: Protein of unknown function DUF1481; KEGG: spe:Spro_0291 hypothetical protein YP_004503677.1 PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; TIGRFAM: Phosphoribosylglycinamide synthetase; HAMAP: Phosphoribosylglycinamide synthetase; KEGG: spe:Spro_0292 phosphoribosylamine--glycine ligase YP_004503678.1 KEGG: spe:Spro_0293 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, formylation region; MGS-like; TIGRFAM: AICARFT/IMPCHase bienzyme; HAMAP: Bifunctional purine biosynthesis protein purH; SMART: AICARFT/IMPCHase bienzyme, formylation region YP_004503679.1 PFAM: Protein of unknown function DUF1486; KEGG: pen:PSEEN3064 hypothetical protein YP_004503680.1 TIGRFAM: Cation/acetate symporter ActP; Sodium/solute symporter, subgroup; HAMAP: Cation/acetate symporter ActP; KEGG: spe:Spro_0295 acetate permease; PFAM: Sodium/solute symporter YP_004503681.1 PFAM: Protein of unknown function DUF485; KEGG: eic:NT01EI_0192 hypothetical protein YP_004503682.1 PFAM: AMP-dependent synthetase/ligase; TIGRFAM: Acetate--CoA ligase; HAMAP: Acetyl-coenzyme A synthetase; KEGG: spe:Spro_0297 acetyl-CoA synthetase YP_004503683.1 PFAM: Sodium:dicarboxylate symporter; KEGG: spe:Spro_0298 sodium:dicarboxylate symporter YP_004503684.1 KEGG: pao:Pat9b_3472 carbonate dehydratase; PFAM: Carbonic anhydrase YP_004503685.1 PFAM: Sulphate transporter; KEGG: eta:ETA_28920 sulphate transporter YP_004503686.1 KEGG: spe:Spro_0301 hypothetical protein YP_004503687.1 KEGG: spe:Spro_0302 replicative DNA helicase; TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal YP_004503688.1 KEGG: spe:Spro_0303 hypothetical protein YP_004503689.1 KEGG: ypz:YPZ3_0294 hypothetical protein YP_004503690.1 KEGG: spe:Spro_0305 hypothetical protein YP_004503691.1 KEGG: spe:Spro_0306 hypothetical protein YP_004503692.1 KEGG: spe:Spro_0307 hypothetical protein YP_004503693.1 KEGG: spe:Spro_0308 hypothetical protein; TIGRFAM: integrating conjugative element protein, PFL_4669 family; PFAM: Protein of unknown function DUF1845 YP_004503694.1 KEGG: spe:Spro_0309 hypothetical protein YP_004503695.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: spe:Spro_0310 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger YP_004503696.1 KEGG: spe:Spro_0311 hypothetical protein YP_004503697.1 KEGG: pst:PSPTO_4753 hypothetical protein YP_004503698.1 KEGG: pst:PSPTO_4752 hypothetical protein YP_004503699.1 PFAM: DNA helicase, UvrD/REP type; Protein of unknown function DUF955; KEGG: pst:PSPTO_4751 UvrD/REP helicase YP_004503700.1 KEGG: spe:Spro_0320 type IV B pilus protein YP_004503701.1 KEGG: spe:Spro_4184 hypothetical protein YP_004503702.1 TIGRFAM: integrating conjugative element protein, PFL_4693 family; KEGG: spe:Spro_0322 hypothetical protein YP_004503703.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: ypz:YPZ3_0306 hypothetical protein YP_004503704.1 TIGRFAM: integrating conjugative element protein, PFL_4695 family; KEGG: spe:Spro_0324 hypothetical protein YP_004503705.1 PFAM: Restriction endonuclease, type IV-like, Mrr; KEGG: spe:Spro_0325 restriction endonuclease YP_004503706.1 TIGRFAM: conjugative coupling factor TraD, SXT/TOL subfamily; KEGG: spe:Spro_4179 plasmid transfer protein YP_004503707.1 TIGRFAM: integrating conjugative element membrane protein, PFL_4697 family; KEGG: spe:Spro_0327 hypothetical protein YP_004503709.1 KEGG: spe:Spro_0329 hypothetical protein; TIGRFAM: Protein of unknown function, RAQPRD; PFAM: Protein of unknown function, RAQPRD YP_004503710.1 TIGRFAM: integrating conjugative element protein, PFL_4701 family; KEGG: spe:Spro_0330 hypothetical protein YP_004503711.1 TIGRFAM: integrating conjugative element membrane protein, PFL_4702 family; KEGG: spe:Spro_0331 hypothetical protein YP_004503712.1 KEGG: spe:Spro_4174 hypothetical protein YP_004503713.1 KEGG: spe:Spro_4173 hypothetical protein YP_004503714.1 TIGRFAM: integrating conjugative element protein, PFL_4704 family; KEGG: ypz:YPZ3_0316 hypothetical protein YP_004503715.1 TIGRFAM: integrating conjugative element protein, PFL_4705 family; KEGG: spe:Spro_4171 hypothetical protein YP_004503717.1 TIGRFAM: conjugative transfer region lipoprotein, TIGR03751 family; KEGG: spe:Spro_4170 lipoprotein YP_004503718.1 TIGRFAM: conjugative transfer ATPase, PFL_4706 family; KEGG: spe:Spro_4169 plasmid-like protein YP_004503719.1 KEGG: spe:Spro_0338 hypothetical protein YP_004503720.1 KEGG: pwa:Pecwa_0669 hypothetical protein YP_004503721.1 KEGG: ecz:ECS88_1342 hypothetical protein YP_004503722.1 KEGG: spe:Spro_0348 hypothetical protein; TIGRFAM: integrating conjugative element protein, PFL_4709 family; PFAM: Protein of unknown function DUF1525 YP_004503723.1 KEGG: spe:Spro_0349 hypothetical protein; TIGRFAM: integrating conjugative element protein, PFL_4710 family; PFAM: Protein of unknown function DUF1527 YP_004503724.1 TIGRFAM: integrating conjugative element protein, PFL_4711 family; KEGG: spe:Spro_0350 hypothetical protein YP_004503725.1 manually curated; KEGG: spe:Spro_0351 hypothetical protein YP_004503726.1 KEGG: spe:Spro_0352 hypothetical protein YP_004503727.1 manually curated; KEGG: spe:Spro_0353 hypothetical protein YP_004503728.1 KEGG: ent:Ent638_4323 phage integrase; manually curated; PFAM: Integrase, catalytic core, phage YP_004503729.1 KEGG: ent:Ent638_4324 hypothetical protein YP_004503731.1 manually curated; KEGG: geo:Geob_1729 hypothetical protein YP_004503732.1 KEGG: xau:Xaut_0674 hypothetical protein YP_004503734.1 KEGG: esc:Entcl_1091 hypothetical protein YP_004503735.1 PFAM: RES; KEGG: enc:ECL_B089 hypothetical protein YP_004503738.1 KEGG: ddd:Dda3937_01866 hypothetical protein YP_004503739.1 KEGG: spe:Spro_0389 hypothetical protein YP_004503740.1 KEGG: spe:Spro_0390 hypothetical protein YP_004503741.1 KEGG: gur:Gura_2882 hypothetical protein YP_004503743.1 KEGG: spq:SPAB_05434 hypothetical protein YP_004503744.1 KEGG: spe:Spro_0393 hypothetical protein YP_004503745.1 KEGG: spe:Spro_0394 hypothetical protein YP_004503746.1 PFAM: Domain of unknown function DUF1738; KEGG: spe:Spro_0395 hypothetical protein YP_004503747.1 PFAM: Protein of unknown function DUF1219; KEGG: spe:Spro_0396 hypothetical protein YP_004503748.1 KEGG: rah:Rahaq_5121 secretion protein HlyD family protein; manually curated; PFAM: Secretion protein HlyD YP_004503749.1 PFAM: Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; ABC transporter-like; KEGG: rah:Rahaq_5120 peptidase C39 bacteriocin processing; SMART: ATPase, AAA+ type, core YP_004503750.1 KEGG: kpe:KPK_A0149 hypothetical protein YP_004503751.1 KEGG: spe:Spro_4054 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004503752.1 KEGG: spe:Spro_4053 hypothetical protein YP_004503753.1 KEGG: spe:Spro_4052 hypothetical protein YP_004503754.1 KEGG: spe:Spro_4051 response regulator receiver protein; PFAM: BetR; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004503755.1 KEGG: spe:Spro_4050 hypothetical protein YP_004503756.1 KEGG: spe:Spro_0400 relaxase; TIGRFAM: integrating conjugative element relaxase, PFGI-1 class; PFAM: Protein of unknown function DUF1528, C-terminal; Protein of unknown function, helicase/relaxase YP_004503757.1 PFAM: Integrase, catalytic core, phage; KEGG: spe:Spro_4117 integrase YP_004503758.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: spe:Spro_0402 transcriptional regulator YP_004503759.1 HAMAP: Thiol:disulfide interchange protein dsbD; KEGG: spe:Spro_0403 thiol:disulfide interchange protein precursor; PFAM: Cytochrome c assembly protein, transmembrane region; Thioredoxin domain YP_004503760.1 PFAM: Divalent ion tolerance protein, CutA1; KEGG: spe:Spro_0404 divalent-cation tolerance protein CutA YP_004503761.1 KEGG: spe:Spro_0405 anaerobic C4-dicarboxylate transporter; TIGRFAM: Anaerobic c4-dicarboxylate membrane transporter; PFAM: Anaerobic c4-dicarboxylate membrane transporter YP_004503762.1 TIGRFAM: Aspartate ammonia-lyase; KEGG: spe:Spro_0406 aspartate ammonia-lyase; PFAM: Fumarate lyase; Fumarase C, C-terminal YP_004503763.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: spe:Spro_0407 FxsA cytoplasmic membrane protein YP_004503764.1 KEGG: spe:Spro_0408 co-chaperonin GroES; HAMAP: Chaperonin Cpn10, subgroup; PFAM: Chaperonin Cpn10 YP_004503765.1 TIGRFAM: Chaperonin Cpn60; HAMAP: 60 kDa chaperonin; KEGG: spe:Spro_0409 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1 YP_004503766.1 KEGG: spe:Spro_0410 hypothetical protein YP_004503767.1 TIGRFAM: lysine-2,3-aminomutase-related protein; Protein of unknown function DUF160; KEGG: spe:Spro_0411 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM YP_004503768.1 TIGRFAM: Translation elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor, KOW-like; Translation elongation factor P/YeiP, central; KEGG: spe:Spro_0412 elongation factor P; SMART: Elongation factor P, C-terminal YP_004503769.1 PFAM: Entericidin EcnAB; KEGG: spe:Spro_0413 entericidin EcnAB YP_004503770.1 PFAM: Entericidin EcnAB; KEGG: spe:Spro_0414 entericidin EcnAB YP_004503771.1 PFAM: Small multidrug resistance protein; KEGG: spe:Spro_0415 small multidrug resistance protein YP_004503772.1 KEGG: spe:Spro_0416 fumarate reductase subunit D; HAMAP: Fumarate reductase subunit D; PFAM: Fumarate reductase, D subunit YP_004503773.1 KEGG: spe:Spro_0417 fumarate reductase subunit C; HAMAP: Fumarate reductase, subunit C; PFAM: Fumarate reductase, subunit C YP_004503774.1 TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; KEGG: spe:Spro_0418 fumarate reductase iron-sulfur subunit; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_004503775.1 TIGRFAM: Fumarate reductase, flavoprotein subunit; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; KEGG: spe:Spro_0419 fumarate reductase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal YP_004503776.1 PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); TIGRFAM: Lysyl-tRNA synthetase-related; HAMAP: Lysyl-tRNA synthetase-related; KEGG: spe:Spro_0420 lysyl-tRNA synthetase YP_004503777.1 PFAM: Mechanosensitive ion channel MscS; KEGG: spe:Spro_0421 hypothetical protein YP_004503778.1 TIGRFAM: Phosphatidylserine decarboxylase; HAMAP: Phosphatidylserine decarboxylase proenzyme; KEGG: spe:Spro_0422 phosphatidylserine decarboxylase; PFAM: Phosphatidylserine decarboxylase-related YP_004503779.1 TIGRFAM: GTPase EngC; HAMAP: ribosome biogenesis GTPase RsgA; KEGG: spe:Spro_0423 ribosome-associated GTPase; PFAM: GTPase EngC YP_004503780.1 HAMAP: Oligoribonuclease; PFAM: Exonuclease, RNase T/DNA polymerase III; KEGG: spe:Spro_0424 oligoribonuclease; SMART: Exonuclease YP_004503781.1 manually curated; TIGRFAM: 4Fe-4S cluster binding; KEGG: spe:Spro_0425 iron-sulfur cluster binding protein; PFAM: Domain of unknown function DUF1730 YP_004503782.1 manually curated; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; KEGG: spe:Spro_0426 hypothetical protein; PFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal YP_004503783.1 KEGG: spe:Spro_0427 ATPase; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria YP_004503784.1 KEGG: spe:Spro_0428 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; Peptidoglycan-binding lysin domain; SMART: Cell wall hydrolase/autolysin, catalytic; Peptidoglycan-binding Lysin subgroup YP_004503785.1 TIGRFAM: DNA mismatch repair protein, N-terminal; HAMAP: DNA mismatch repair protein mutL; KEGG: spe:Spro_0429 DNA mismatch repair protein; PFAM: DNA mismatch repair protein, C-terminal; ATP-binding region, ATPase-like; MutL, C-terminal, dimerisation YP_004503786.1 KEGG: spe:Spro_0430 tRNA delta(2)-isopentenylpyrophosphate transferase; manually curated; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; HAMAP: tRNA dimethylallyltransferase YP_004503787.1 KEGG: spe:Spro_0431 RNA-binding protein Hfq; TIGRFAM: Host factor Hfq; PFAM: Like-Sm ribonucleoprotein, core YP_004503788.1 KEGG: spe:Spro_0432 GTPase HflX; TIGRFAM: GTP-binding protein, HflX; PFAM: GTP-binding protein, HSR1-related YP_004503789.1 TIGRFAM: HflK; PFAM: Band 7 protein; KEGG: spe:Spro_0433 FtsH protease regulator HflK; SMART: Band 7 protein YP_004503790.1 TIGRFAM: HflC; PFAM: Band 7 protein; KEGG: spe:Spro_0434 FtsH protease regulator HflC; SMART: Band 7 protein YP_004503791.1 KEGG: spe:Spro_0435 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2065 YP_004503792.1 KEGG: spe:Spro_0436 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; HAMAP: Adenylosuccinate synthetase; SMART: Adenylosuccinate synthetase YP_004503793.1 TIGRFAM: Transcriptional regulator, Rrf2; HAMAP: HTH-type transcriptional repressor nsrR; KEGG: spe:Spro_0437 transcriptional repressor NsrR; PFAM: Transcriptional regulator, Rrf2 YP_004503794.1 TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; PFAM: Ribonuclease II/R; Ribonuclease B, OB region N-terminal; Ribonuclease R winged-helix domain; Ribosomal protein S1, RNA binding domain; KEGG: spe:Spro_0438 exoribonuclease R; SMART: Cold shock protein YP_004503795.1 KEGG: spe:Spro_0439 23S rRNA (guanosine-2'-O-)-methyltransferase; TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding YP_004503796.1 PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; KEGG: spe:Spro_0440 isovaleryl CoA dehydrogenase YP_004503797.1 PFAM: Protein of unknown function DUF350; KEGG: spe:Spro_0441 hypothetical protein YP_004503798.1 PFAM: Protein of unknown function DUF1471; KEGG: spe:Spro_0442 hypothetical protein YP_004503799.1 PFAM: Protein of unknown function DUF1471; KEGG: spe:Spro_0443 biofilm stress and motility protein A YP_004503800.1 KEGG: spe:Spro_0444 esterase YP_004503801.1 PFAM: Protein of unknown function DUF1471; KEGG: spe:Spro_0445 hypothetical protein YP_004503802.1 TIGRFAM: Ribosomal protein S6; HAMAP: Ribosomal protein S6, bacterial-like; KEGG: spe:Spro_0446 30S ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like YP_004503803.1 manually curated; HAMAP: Primosomal replication protein n; KEGG: yps:YPTB0439 primosomal replication protein N; PFAM: Primosome PriB/single-strand DNA-binding YP_004503804.1 TIGRFAM: Ribosomal protein S18; HAMAP: 30S ribosomal protein S18; KEGG: rah:Rahaq_0442 ribosomal protein S18; PFAM: Ribosomal protein S18 YP_004503805.1 TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; HAMAP: Ribosomal protein L9, bacteria/chloroplast; KEGG: rah:Rahaq_0443 ribosomal protein L9; PFAM: Ribosomal protein L9, C-terminal; Ribosomal protein L9, N-terminal YP_004503806.1 PFAM: Protein of unknown function DUF488; KEGG: spe:Spro_0450 hypothetical protein YP_004503807.1 PFAM: Opacity-associated protein A; Opacity-associated protein A, N-terminal; KEGG: spe:Spro_0451 opacity-associated protein A YP_004503808.1 PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; KEGG: spe:Spro_0452 peptidyl-prolyl cis-trans isomerase YP_004503809.1 KEGG: pct:PC1_3427 hypothetical protein; TIGRFAM: Iron-sulfur cluster repair di-iron protein; PFAM: Protein of unknown function DUF542, ScdA N-terminal; Haemerythrin/HHE cation-binding motif YP_004503810.1 TIGRFAM: 2 ,3 -cyclic-nucleotide 2 -phosphodiesterase; KEGG: spe:Spro_0453 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; PFAM: 5'-Nucleotidase, C-terminal; Metallophosphoesterase YP_004503811.1 KEGG: spe:Spro_0454 adenosine-3'(2'),5'-bisphosphate nucleotidase; TIGRFAM: 3(2),5 -bisphosphate nucleotidase, bacterial; PFAM: Inositol monophosphatase YP_004503812.1 KEGG: spe:Spro_0455 hypothetical protein; TIGRFAM: Conserved hypothetical protein, YtfJ; PFAM: Conserved hypothetical protein, YtfJ YP_004503813.1 PFAM: Protein of unknown function DUF1107; KEGG: spe:Spro_0456 hypothetical protein YP_004503814.1 KEGG: spe:Spro_0457 hypothetical protein; PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated region; SMART: Cystathionine beta-synthase, core YP_004503815.1 PFAM: Peptide methionine sulphoxide reductase MsrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: spe:Spro_0458 methionine sulfoxide reductase A YP_004503816.1 PFAM: Bacterial surface antigen (D15); Surface antigen variable number; KEGG: spe:Spro_0459 surface antigen (D15) YP_004503817.1 PFAM: Protein of unknown function DUF490; KEGG: spe:Spro_0460 hypothetical protein YP_004503818.1 PFAM: AIG2-like; KEGG: rah:Rahaq_0455 AIG2 family protein YP_004503819.1 HAMAP: Inorganic pyrophosphatase; KEGG: spe:Spro_0462 inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase YP_004503820.1 KEGG: spe:Spro_0463 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain YP_004503821.1 HAMAP: Fructose-1,6-bisphosphatase; KEGG: spe:Spro_0464 fructose-1,6-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase YP_004503822.1 TIGRFAM: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; KEGG: spe:Spro_0465 UDP-N-acetylmuramate; PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal YP_004503823.1 PFAM: Protein of unknown function DUF1471; KEGG: spe:Spro_0466 hypothetical protein YP_004503824.1 PFAM: Protein of unknown function DUF1471; KEGG: spe:Spro_0467 hypothetical protein YP_004503825.1 KEGG: spe:Spro_0468 arginine repressor; TIGRFAM: Arginine repressor; PFAM: Arginine repressor YP_004503826.1 PFAM: Lactate/malate dehydrogenase; TIGRFAM: Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria; HAMAP: Malate dehydrogenase; KEGG: spe:Spro_0469 malate dehydrogenase YP_004503827.1 KEGG: spe:Spro_0470 transcriptional regulator Nlp YP_004503828.1 PFAM: Transposase MuA/Repressor CI, DNA-binding; KEGG: spe:Spro_3546 MuA-transposase/repressor protein CI DNA-binding YP_004503829.1 KEGG: spe:Spro_0472 octaprenyl diphosphate synthase; PFAM: Polyprenyl synthetase YP_004503830.1 TIGRFAM: Ribosomal protein L21; HAMAP: Ribosomal protein L21; KEGG: spe:Spro_0473 50S ribosomal protein L21; PFAM: Ribosomal protein L21 YP_004503831.1 KEGG: spe:Spro_0474 50S ribosomal protein L27; TIGRFAM: Ribosomal protein L27; PFAM: Ribosomal protein L27 YP_004503832.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: spe:Spro_0475 hypothetical protein YP_004503833.1 TIGRFAM: GTP-binding protein Obg/CgtA; HAMAP: GTPase obg; KEGG: spe:Spro_0476 GTPase ObgE; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related YP_004503834.1 KEGG: spe:Spro_0477 sensor protein BasS/PmrB; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004503835.1 KEGG: spe:Spro_0478 DNA-binding transcriptional regulator BasR; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004503836.1 TIGRFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: spe:Spro_0479 D-alanyl-D-alanine carboxypeptidase/endopeptidase; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C YP_004503837.1 TIGRFAM: Prokaryotic transcription elongation factor GreA; HAMAP: Transcription elongation factor greA; KEGG: spe:Spro_0480 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic YP_004503838.1 KEGG: spe:Spro_0481 hypothetical protein; TIGRFAM: RNA-binding, CRM domain, prokaryote; PFAM: RNA-binding, CRM domain YP_004503839.1 TIGRFAM: Ribosomal RNA large subunit methyltransferase J; HAMAP: Ribosomal RNA large subunit methyltransferase E; KEGG: spe:Spro_0482 23S rRNA methyltransferase J; PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ YP_004503840.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: spe:Spro_0483 ATP-dependent metalloprotease; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular YP_004503841.1 TIGRFAM: Dihydropteroate synthase; KEGG: spe:Spro_0484 dihydropteroate synthase; PFAM: Dihydropteroate synthase, DHPS YP_004503842.1 TIGRFAM: Phosphoglucosamine mutase; KEGG: spe:Spro_0485 phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal YP_004503843.1 KEGG: spe:Spro_0486 preprotein translocase subunit SecG; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit YP_004503844.1 manually curated; HAMAP: Uncharacterised protein family UPF0090, bacteria; KEGG: spe:Spro_0487 hypothetical protein; PFAM: Uncharacterised protein family UPF0090 YP_004503845.1 KEGG: spe:Spro_0488 transcription elongation factor NusA; TIGRFAM: Transcription termination factor NusA; Transcription termination factor NusA, C-terminal duplication; PFAM: Transcription factor NusA, N-terminal; Ribosomal protein S1, RNA binding domain YP_004503846.1 KEGG: spe:Spro_0489 translation initiation factor IF-2; TIGRFAM: Initiation factor 2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Initiation factor 2 associated region, bacterial; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2 YP_004503847.1 TIGRFAM: Ribosome-binding factor A; HAMAP: Ribosome-binding factor A; KEGG: spe:Spro_0490 ribosome-binding factor A; PFAM: Ribosome-binding factor A YP_004503848.1 TIGRFAM: Pseudouridine synthase II, TruB, N-terminal, bacterial-type; HAMAP: tRNA pseudouridine synthase B; KEGG: spe:Spro_0491 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II, TruB, N-terminal; Pseudouridine synthase II, TruB, subfamily 1, C-terminal, bacterial-type YP_004503849.1 KEGG: pct:PC1_0588 ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15 YP_004503850.1 PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA binding domain; TIGRFAM: Polyribonucleotide nucleotidyltransferase; HAMAP: Polyribonucleotide nucleotidyltransferase; KEGG: spe:Spro_0493 polynucleotide phosphorylase/polyadenylase YP_004503851.1 KEGG: spe:Spro_0494 lipoprotein NlpI; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat YP_004503852.1 KEGG: spe:Spro_0495 ATP-dependent RNA helicase DeaD; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004503853.1 PFAM: Protein of unknown function DUF395, YeeE/YedE; KEGG: spe:Spro_0496 hypothetical protein YP_004503854.1 PFAM: SirA-like; KEGG: spe:Spro_0497 hypothetical protein YP_004503855.1 SMART: Helix-turn-helix type 3; KEGG: pao:Pat9b_5281 helix-turn-helix domain-containing protein YP_004503856.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pau:PA14_47900 MFS transporter YP_004503857.1 KEGG: spe:Spro_0498 hypothetical protein; TIGRFAM: Luciferase oxidoreductase, group 1; PFAM: Luciferase-like, subgroup YP_004503858.1 PFAM: Secretion protein HlyD; KEGG: spe:Spro_0499 secretion protein HlyD family protein YP_004503859.1 PFAM: ABC-2 type transporter; KEGG: spe:Spro_0500 ABC-2 type transporter YP_004503860.1 PFAM: ABC-2 type transporter; KEGG: spe:Spro_0501 ABC-2 type transporter YP_004503861.1 PFAM: Transcriptional regulator, YbiH, C-terminal; Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smt:Smal_3543 transcriptional regulator TetR YP_004503862.1 PFAM: Peptidase M24, structural domain; KEGG: smt:Smal_3542 peptidase M24 YP_004503864.1 PFAM: Peptidase U32; KEGG: spe:Spro_0503 peptidase U32 YP_004503865.1 PFAM: Peptidase U32; KEGG: spe:Spro_0504 peptidase U32 YP_004503866.1 PFAM: Sterol-binding; KEGG: spe:Spro_0505 sterol-binding domain-containing protein YP_004503867.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_0506 GCN5-related N-acetyltransferase YP_004503868.1 KEGG: spe:Spro_0507 excinuclease ABC subunit C; HAMAP: UPF0213 protein yhbQ; PFAM: Excinuclease ABC, C subunit, N-terminal YP_004503870.1 HAMAP: UPF0306 protein yhbP; KEGG: spe:Spro_0510 hypothetical protein YP_004503871.1 PFAM: Semialdehyde dehydrogenase, NAD-binding; KEGG: spe:Spro_0511 hypothetical protein YP_004503872.1 TIGRFAM: Phosphonate metabolism protein PhnP; KEGG: spe:Spro_0512 carbon-phosphorus lyase complex accessory protein YP_004503873.1 TIGRFAM: Phosphonate metabolim protein, transferase hexapeptide repeat family; KEGG: spe:Spro_0513 acetyltransferase (virginiamycin, streptogramin A, chloramphenicol) YP_004503874.1 KEGG: spe:Spro_0514 ribose 1,5-bisphosphokinase; TIGRFAM: Phosphonate metabolism, 1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: Guanylate kinase/L-type calcium channel region YP_004503875.1 KEGG: spe:Spro_0515 phosphonate metabolism protein PhnM; TIGRFAM: Phosphonate metabolism PhnM; PFAM: Amidohydrolase 1 YP_004503876.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphonate C-P lyase system, PhnL; KEGG: spe:Spro_0516 phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter-like YP_004503877.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphonate C-P lyase system, PhnK; KEGG: spe:Spro_0517 phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_004503878.1 PFAM: Phosphonate metabolism PhnJ; KEGG: spe:Spro_0518 phosphonate metabolism protein PhnJ YP_004503879.1 PFAM: Phosphonate metabolism; KEGG: spe:Spro_0519 phosphonate metabolism protein PhnI YP_004503880.1 KEGG: spe:Spro_0520 carbon-phosphorus lyase complex subunit; TIGRFAM: Bacterial phosphonate metabolism; PFAM: Bacterial phosphonate metabolism YP_004503881.1 KEGG: spe:Spro_0521 phosphonate metabolism protein PhnG; TIGRFAM: Phosphonate metabolism PhnG; PFAM: Phosphonate metabolism PhnG YP_004503882.1 TIGRFAM: Phosphonate C-P lyase system, transcriptional regulator PhnF; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: spe:Spro_0522 phosphonate metabolism transcriptional regulator PhnF; SMART: HTH transcriptional regulator, GntR YP_004503883.1 PFAM: Protein of unknown function DUF318, transmembrane; KEGG: spe:Spro_0523 permease YP_004503884.1 PFAM: Protein of unknown function DUF1778; KEGG: tau:Tola_1814 transcriptional regulator, CopG family YP_004503885.1 KEGG: vvy:VVA0314 plasmid stabilization system protein protein; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system YP_004503886.1 TIGRFAM: Ribonucleoside-triphosphate reductase activating, anaerobic; KEGG: spe:Spro_0524 anaerobic ribonucleotide reductase-activating protein YP_004503887.1 TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic; KEGG: spe:Spro_0525 anaerobic ribonucleoside triphosphate reductase; PFAM: Formate C-acetyltransferase glycine radical; ATP-cone YP_004503888.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_0526 LysR family transcriptional regulator YP_004503889.1 PFAM: Flavodoxin-like fold; KEGG: spe:Spro_0527 NAD(P)H dehydrogenase (quinone) YP_004503890.1 SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; TIGRFAM: Alpha,alpha-phosphotrehalase; KEGG: spe:Spro_0528 trehalose-6-phosphate hydrolase; PFAM: Glycosyl hydrolase, family 13, catalytic region YP_004503891.1 TIGRFAM: Phosphotransferase system, trehalose-specific IIBC component; Phosphotransferase system, glucose-like IIB component; KEGG: spe:Spro_0529 PTS system trehalose(maltose)-specific transporter subunits IIBC; PFAM: Phosphotransferase system, EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_004503892.1 KEGG: spe:Spro_0530 entry exclusion protein 2 YP_004503893.1 TIGRFAM: Trehalose operon repressor; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; KEGG: spe:Spro_0534 trehalose repressor; SMART: HTH transcriptional regulator, LacI YP_004503894.1 TIGRFAM: ATPase, P-type, magnesium-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: spe:Spro_0535 magnesium-transporting ATPase MgtA; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal YP_004503895.1 KEGG: spe:Spro_0536 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Beta-N-acetylhexosaminidase-like YP_004503896.1 PFAM: Proteasome, subunit alpha/beta; KEGG: spe:Spro_0537 20S proteasome subunits A and B YP_004503897.1 KEGG: spe:Spro_0538 transglutaminase domain-containing protein; PFAM: Bacterial transglutaminase-like, N-terminal; Transglutaminase-like; SMART: Transglutaminase-like YP_004503898.1 PFAM: Protein of unknown function DUF403, bacteria; KEGG: spe:Spro_0539 hypothetical protein YP_004503899.1 PFAM: Protein of unknown function DUF404, bacteria N-terminal; Protein of unknown function DUF407; KEGG: spe:Spro_0540 hypothetical protein YP_004503900.1 KEGG: spe:Spro_0543 endoribonuclease L-PSP; TIGRFAM: YjgF-like protein; PFAM: Endoribonuclease L-PSP YP_004503901.1 TIGRFAM: Aspartate transcarbamylase regulatory subunit; HAMAP: Aspartate transcarbamylase regulatory subunit; KEGG: spe:Spro_0544 aspartate carbamoyltransferase regulatory subunit; PFAM: Aspartate carbamoyltransferase regulatory subunit, N-terminal; Aspartate carbamoyltransferase regulatory subunit, C-terminal YP_004503902.1 PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; HAMAP: Aspartate carbamoyltransferase; KEGG: spe:Spro_0545 aspartate carbamoyltransferase catalytic subunit YP_004503903.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: spe:Spro_0553 extracellular solute-binding protein YP_004503904.1 PFAM: Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; TIGRFAM: Ornithine carbamoyltransferase; HAMAP: Ornithine carbamoyltransferase; KEGG: spe:Spro_0554 ornithine carbamoyltransferase YP_004503905.1 PFAM: Protein of unknown function DUF1260; KEGG: spe:Spro_0555 hypothetical protein YP_004503906.1 PFAM: tRNA--hydroxylase; KEGG: spe:Spro_0556 tRNA--hydroxylase YP_004503907.1 KEGG: spe:Spro_0557 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal YP_004503908.1 PFAM: Acyltransferase 3; KEGG: spe:Spro_0558 acyltransferase 3 YP_004503909.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_0559 GCN5-related N-acetyltransferase YP_004503910.1 TIGRFAM: Valyl-tRNA synthetase, class Ia; HAMAP: Valyl-tRNA synthetase; KEGG: spe:Spro_0560 valyl-tRNA synthetase YP_004503911.1 KEGG: spe:Spro_0561 DNA polymerase III subunit chi; PFAM: DNA polymerase III chi subunit, HolC YP_004503912.1 HAMAP: cytosol aminopeptidase; KEGG: spe:Spro_0562 leucyl aminopeptidase; PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal YP_004503913.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: spe:Spro_0563 permease YjgP/YjgQ family protein YP_004503914.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: spe:Spro_0564 permease YjgP/YjgQ family protein YP_004503915.1 KEGG: eca:ECA0408 plasmid-related protein YP_004503917.1 KEGG: spe:Spro_0566 carbonate dehydratase; PFAM: Carbonic anhydrase YP_004503919.1 KEGG: spe:Spro_0567 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004503920.1 KEGG: rah:Rahaq_4719 HipA N-terminal domain protein; TIGRFAM: HipA, N-terminal; PFAM: HipA-like, C-terminal; HipA-like, N-terminal YP_004503921.1 PFAM: endonuclease, Z1 domain; KEGG: hel:HELO_4400 hypothetical protein YP_004503922.1 KEGG: jan:Jann_2862 hypothetical protein YP_004503923.1 KEGG: hel:HELO_4399 hypothetical protein YP_004503924.1 KEGG: jan:Jann_2860 hypothetical protein YP_004503925.1 KEGG: pmi:PMT9312_0377 hypothetical protein YP_004503926.1 manually curated; TIGRFAM: DNA methylase, C-5 cytosine-specific; KEGG: saz:Sama_0281 modification methylase (cytosine-specific methyltransferase; PFAM: DNA methylase, C-5 cytosine-specific YP_004503927.1 manually curated; TIGRFAM: DNA mismatch endonuclease vsr; KEGG: pde:Pden_2062 DNA mismatch endonuclease vsr; PFAM: DNA mismatch endonuclease vsr YP_004503928.1 KEGG: spe:Spro_0575 cryptic 6-phospho-beta-glucosidase; PFAM: Glycoside hydrolase, family 1 YP_004503929.1 KEGG: spe:Spro_0576 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; PFAM: Phosphotransferase system, EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_004503930.1 KEGG: spe:Spro_0577 LacI family transcription regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004503931.1 PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; KEGG: spe:Spro_0580 GTP-binding protein YjiA YP_004503932.1 PFAM: Protein of unknown function DUF466; KEGG: spe:Spro_0581 hypothetical protein YP_004503933.1 PFAM: Carbon starvation protein CstA; KEGG: spe:Spro_0582 carbon starvation protein CstA YP_004503934.1 PFAM: Beta-lactamase-related; KEGG: azc:AZC_0991 beta-lactamase YP_004503935.1 KEGG: kva:Kvar_2211 alkanesulfonate monooxygenase; PFAM: Luciferase-like, subgroup YP_004503936.1 KEGG: spe:Spro_0583 glycosyl transferase; PFAM: Glycosyl transferase, family 20 YP_004503937.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pam:PANA_4172 hypothetical protein YP_004503938.1 KEGG: spe:Spro_0584 glutamine synthetase catalytic region; PFAM: Glutamine synthetase, catalytic region YP_004503939.1 KEGG: spe:Spro_0585 hypothetical protein YP_004503940.1 PFAM: Protein of unknown function DUF2137; KEGG: pcr:Pcryo_2476 hypothetical protein YP_004503941.1 KEGG: ctu:Ctu_28120 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004503942.1 KEGG: spe:Spro_0586 receptor YP_004503943.1 KEGG: ppr:PBPRA2121 inner membrane transport protein YdhC; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004503944.1 PFAM: Cytochrome P450; KEGG: sna:Snas_1843 cytochrome P450 YP_004503945.1 PFAM: Phosphopantetheine-binding; KEGG: mab:MAB_3576c phosphopantetheine attachment site domain-containing protein YP_004503946.1 PFAM: NADPH-dependent FMN reductase; KEGG: pao:Pat9b_4663 NADPH-dependent FMN reductase YP_004503947.1 PFAM: Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: scb:SCAB_3301 oxidoreductase YP_004503948.1 PFAM: Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: sma:SAV_3651 non-ribosomal peptide synthetase/acyl-CoA dehydrogenase fusion protein YP_004503949.1 PFAM: AMP-dependent synthetase/ligase; KEGG: scb:SCAB_3281 NRPS-associated AMP-binding protein YP_004503950.1 TIGRFAM: Thioester reductase; KEGG: mxa:MXAN_4525 non-ribosomal peptide synthase MxaA; PFAM: Male sterility, NAD-binding; Phosphopantetheine-binding YP_004503951.1 TIGRFAM: Amino acid adenylation; KEGG: ava:Ava_C0009 amino acid adenylation; PFAM: AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding; Luciferase-like, subgroup; Methyltransferase type 11 YP_004503952.1 KEGG: spe:Spro_0596 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004503953.1 KEGG: spe:Spro_0597 AraC family transcriptional regulator; PFAM: Bacterial transcription activator, effector binding; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004503954.1 PFAM: YkuD domain; KEGG: spe:Spro_0598 ErfK/YbiS/YcfS/YnhG family protein YP_004503955.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: spe:Spro_0600 biopolymer transport protein ExbD/TolR YP_004503956.1 TIGRFAM: TonB, C-terminal; KEGG: spe:Spro_0601 TonB family protein YP_004503957.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: spe:Spro_0602 TonB-dependent receptor YP_004503958.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: spe:Spro_0603 MotA/TolQ/ExbB proton channel YP_004503959.1 PFAM: Phospholipase D/Transphosphatidylase; KEGG: spe:Spro_0604 phospholipase D/transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase YP_004503960.1 KEGG: spe:Spro_0607 beta alanine--pyruvate transaminase; PFAM: Aminotransferase class-III YP_004503961.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_0608 LysR family transcriptional regulator YP_004503963.1 KEGG: spe:Spro_0611 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type YP_004503964.1 KEGG: spe:Spro_0612 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004503965.1 PFAM: FAD dependent oxidoreductase; KEGG: spe:Spro_0613 FAD dependent oxidoreductase YP_004503966.1 PFAM: Protein of unknown function DUF861, cupin-3; KEGG: spe:Spro_0614 hypothetical protein YP_004503967.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: spe:Spro_0615 alpha/beta hydrolase fold domain-containing protein YP_004503968.1 PFAM: Histone deacetylase superfamily; KEGG: spe:Spro_0616 histone deacetylase superfamily protein YP_004503969.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_0617 major facilitator transporter YP_004503970.1 KEGG: spe:Spro_0618 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004503971.1 PFAM: Amino acid permease-associated region; KEGG: spe:Spro_0619 amino acid permease-associated protein YP_004503972.1 KEGG: spe:Spro_0620 hypothetical protein YP_004503973.1 KEGG: spe:Spro_0621 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004503974.1 PFAM: Molybdenum cofactor biosynthesis protein F; KEGG: spe:Spro_0622 MoaF YP_004503975.1 KEGG: spe:Spro_0623 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004503976.1 TIGRFAM: Homoprotocatechuate degradation transcriptional regulator HpaR; PFAM: HTH transcriptional regulator, MarR; KEGG: spe:Spro_0624 MarR family transcriptional regulator; SMART: HTH transcriptional regulator, MarR YP_004503977.1 TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit; KEGG: spe:Spro_0625 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG1; PFAM: Fumarylacetoacetase, C-terminal-like YP_004503978.1 TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit; KEGG: spe:Spro_0626 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG2; PFAM: Fumarylacetoacetase, C-terminal-like YP_004503979.1 TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; KEGG: spe:Spro_0627 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004503980.1 TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD; KEGG: krh:KRH_22020 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004503981.1 KEGG: spe:Spro_0629 5-carboxymethyl-2-hydroxymuconate isomerase; PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase YP_004503982.1 TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; KEGG: spe:Spro_0630 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Fumarylacetoacetase, C-terminal-like YP_004503983.1 TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; KEGG: spe:Spro_0631 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase YP_004503984.1 KEGG: spe:Spro_0632 4-hydroxyphenylacetate transporter; TIGRFAM: 4-hydroxyphenylacetate permease; PFAM: Major facilitator superfamily MFS-1 YP_004503985.1 TIGRFAM: 4-hydroxyphenylacetate catabolism regulatory protein hpaA; PFAM: Helix-turn-helix, AraC type; KEGG: spe:Spro_0633 AraC family transcriptional regulator; SMART: Helix-turn-helix, AraC domain YP_004503986.1 KEGG: spe:Spro_0634 4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit; TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component gammaproteobacteria; PFAM: 4-hydroxyphenylacetate 3-hydroxylase YP_004503987.1 KEGG: spe:Spro_0635 4-hydroxyphenylacetate 3-monooxygenase, reductase subunit; TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, reductase component; PFAM: Flavin reductase-like, FMN-binding YP_004503988.1 PFAM: Beta-lactamase-related; KEGG: spe:Spro_0636 beta-lactam binding protein AmpH YP_004503989.1 KEGG: spe:Spro_0637 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004503990.1 KEGG: spe:Spro_0638 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004503991.1 KEGG: spe:Spro_0639 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Fumarylacetoacetase, C-terminal-like YP_004503992.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; KEGG: spe:Spro_0640 mandelate racemase/muconate lactonizing protein YP_004503993.1 PFAM: Amidohydrolase 2; KEGG: spe:Spro_0641 amidohydrolase 2 YP_004503994.1 KEGG: spe:Spro_0642 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004503995.1 PFAM: Rhamnose mutarotase; KEGG: spe:Spro_0643 hypothetical protein YP_004503996.1 KEGG: spe:Spro_0644 L-fucose transporter; TIGRFAM: L-fucose permease; PFAM: Major facilitator superfamily MFS-1 YP_004503997.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pwa:Pecwa_2790 major facilitator superfamily MFS_1 YP_004503998.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: axy:AXYL_02575 LysR family regulatory helix-turn-helix protein 75 YP_004503999.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pfl:PFL_4098 transporter YP_004504000.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: axy:AXYL_03987 TetR family regulatory protein 17 YP_004504001.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: spe:Spro_0645 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004504002.1 PFAM: Protein of unknown function DUF1435; KEGG: spe:Spro_0646 hypothetical protein YP_004504003.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_0647 LysR family transcriptional regulator YP_004504004.1 KEGG: spe:Spro_0648 aldo/keto reductase; PFAM: Aldo/keto reductase YP_004504005.1 HAMAP: Ribosomal RNA small subunit methyltransferase C; KEGG: spe:Spro_0649 16S ribosomal RNA m2G1207 methyltransferase; PFAM: Methyltransferase small; Methyltransferase small, N-terminal YP_004504006.1 KEGG: spe:Spro_0650 DNA polymerase III subunit psi; PFAM: DNA polymerase III, psi subunit YP_004504007.1 TIGRFAM: Ribosomal-protein-alanine acetyltransferase; KEGG: spe:Spro_0651 ribosomal-protein-alanine N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_004504008.1 KEGG: sbn:Sbal195_3478 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004504009.1 KEGG: rah:Rahaq_3831 HipA N-terminal domain protein; TIGRFAM: HipA, N-terminal; PFAM: HipA-like, C-terminal; HipA-like, N-terminal YP_004504010.1 TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; HAMAP: Peptide chain release factor 3; KEGG: spe:Spro_0652 peptide chain release factor 3; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2 YP_004504011.1 KEGG: spe:Spro_0653 periplasmic protein; PFAM: Transport-associated; SMART: Transport-associated and nodulation region, bacteria YP_004504012.1 KEGG: spe:Spro_0654 hypothetical protein; HAMAP: Protein of unknown function DUF1328; PFAM: Protein of unknown function DUF1328 YP_004504013.1 KEGG: spe:Spro_0655 hypothetical protein YP_004504014.1 PFAM: Patatin; KEGG: spe:Spro_0656 patatin YP_004504015.1 PFAM: Deoxyribonuclease, TatD-related; KEGG: spe:Spro_0657 TatD-related deoxyribonuclease YP_004504016.1 KEGG: spe:Spro_0659 nucleoside transporter; TIGRFAM: Concentrative nucleoside transporter, metazoan/bacterial; PFAM: Na dependent nucleoside transporter, C-terminal; Na dependent nucleoside transporter; Nucleoside recognition YP_004504017.1 PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: Deoxyribose-phosphate aldolase; HAMAP: Deoxyribose-phosphate aldolase; KEGG: spe:Spro_0660 deoxyribose-phosphate aldolase YP_004504018.1 PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; Pyrimidine nucleoside phosphorylase, C-terminal; TIGRFAM: Thymidine phosphorylase; Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic; HAMAP: Thymidine phosphorylase; KEGG: spe:Spro_0661 thymidine phosphorylase YP_004504019.1 TIGRFAM: Phosphopentomutase; HAMAP: Phosphopentomutase; KEGG: spe:Spro_0662 phosphopentomutase YP_004504020.1 PFAM: Nucleoside phosphorylase; TIGRFAM: Purine nucleoside phosphorylase; HAMAP: Purine nucleoside phosphorylase deoD-type; KEGG: spe:Spro_0663 purine nucleoside phosphorylase YP_004504021.1 PFAM: Virulence factor, haemolysin regulator; KEGG: spe:Spro_0665 hypothetical protein YP_004504022.1 TIGRFAM: Phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: spe:Spro_0666 phosphoserine phosphatase; PFAM: Haloacid dehalogenase-like hydrolase YP_004504023.1 KEGG: spe:Spro_0667 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: ATPase, AAA+ type, core YP_004504024.1 TIGRFAM: Nicotinamide-nucleotide adenylyltransferase; Cytidyltransferase-related; PFAM: Helix-turn-helix type 3; Cytidylyltransferase; KEGG: spe:Spro_0668 nicotinamide-nucleotide adenylyltransferase; SMART: Helix-turn-helix type 3 YP_004504025.1 KEGG: spe:Spro_0669 zinc-binding alcohol dehydrogenase; TIGRFAM: Alcohol dehydrogenase, zinc-binding type 1; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004504026.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_0670 LysR family transcriptional regulator YP_004504027.1 TIGRFAM: ATP-binding cassette protein, ChvD family; PFAM: ABC transporter-like; KEGG: spe:Spro_0671 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004504028.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: spe:Spro_0672 OmpA/MotB domain-containing protein YP_004504029.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; HAMP linker domain; KEGG: spe:Spro_0673 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004504030.1 KEGG: spe:Spro_0674 hypothetical protein YP_004504031.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: spe:Spro_0675 lytic murein transglycosylase YP_004504032.1 TIGRFAM: Trp repressor, bacterial; HAMAP: Trp repressor, bacterial; KEGG: spe:Spro_0676 Trp operon repressor; PFAM: Trp repressor YP_004504033.1 TIGRFAM: Protein of unknown function DUF84; HAMAP: Protein of unknown function DUF84; KEGG: spe:Spro_0677 NTPase; PFAM: Protein of unknown function DUF84 YP_004504034.1 KEGG: spe:Spro_0678 phosphoglycerate mutase; HAMAP: phosphoglycerate mutase gpmB; PFAM: Phosphoglycerate mutase YP_004504035.1 KEGG: spe:Spro_0679 AraC family transcriptional regulator; PFAM: Bacterial transcription activator, effector binding; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004504036.1 PFAM: CreA; KEGG: spe:Spro_0680 hypothetical protein YP_004504037.1 KEGG: spe:Spro_0681 two-component response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal YP_004504038.1 KEGG: spe:Spro_0682 RNA methyltransferase; TIGRFAM: RNA methyltransferase TrmH, group 1; PFAM: tRNA/rRNA methyltransferase, SpoU YP_004504039.1 KEGG: spe:Spro_0683 bifunctional aspartokinase I/homoserine dehydrogenase I; TIGRFAM: Aspartate kinase region; PFAM: Homoserine dehydrogenase, catalytic; Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT; Aspartate/homoserine dehydrogenase, NAD-binding YP_004504040.1 TIGRFAM: Homoserine kinase; HAMAP: Homoserine kinase; KEGG: spe:Spro_0684 homoserine kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal YP_004504041.1 TIGRFAM: Threonine synthase; KEGG: spe:Spro_0685 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004504042.1 KEGG: spe:Spro_0686 hypothetical protein; HAMAP: UPF0246 protein yaaA; PFAM: Protein of unknown function DUF328 YP_004504043.1 KEGG: spe:Spro_0687 amino acid carrier protein; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter YP_004504044.1 TIGRFAM: Transaldolase AB; HAMAP: Transaldolase; KEGG: spe:Spro_0688 transaldolase B; PFAM: Transaldolase YP_004504045.1 KEGG: spe:Spro_0689 molybdenum cofactor biosynthesis protein MogA; TIGRFAM: Molybdenum cofactor synthesis; PFAM: Molybdopterin binding YP_004504046.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_0690 major facilitator transporter YP_004504047.1 PFAM: GPR1/FUN34/yaaH; KEGG: spe:Spro_0691 hypothetical protein YP_004504048.1 TIGRFAM: Chaperone DnaK; HAMAP: Chaperone DnaK; KEGG: spe:Spro_0692 molecular chaperone DnaK; PFAM: Heat shock protein 70 YP_004504049.1 SMART: Heat shock protein DnaJ, N-terminal; TIGRFAM: Chaperone DnaJ; KEGG: spe:Spro_0693 chaperone protein DnaJ; HAMAP: Chaperone protein dnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, cysteine-rich region; Heat shock protein DnaJ, N-terminal YP_004504050.1 TIGRFAM: Na+/H+ antiporter NhaA; HAMAP: Na+/H+ antiporter NhaA; KEGG: spe:Spro_0694 pH-dependent sodium/proton antiporter; PFAM: Na+/H+ antiporter NhaA YP_004504051.1 PFAM: HTH transcriptional regulator, LysR; KEGG: spe:Spro_0695 transcriptional activator NhaR YP_004504052.1 TIGRFAM: Ribosomal protein S20; HAMAP: Ribosomal protein S20; KEGG: spe:Spro_0696 30S ribosomal protein S20; PFAM: Ribosomal protein S20 YP_004504053.1 TIGRFAM: Riboflavin kinase/FAD synthetase; KEGG: spe:Spro_0697 bifunctional riboflavin kinase/FMN adenylyltransferase; PFAM: FAD synthetase; Riboflavin kinase YP_004504054.1 TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; HAMAP: Isoleucyl-tRNA synthetase; KEGG: spe:Spro_0698 isoleucyl-tRNA synthetase YP_004504055.1 PFAM: Peptidase A8, signal peptidase II; TIGRFAM: Peptidase A8, signal peptidase II; HAMAP: Peptidase A8, signal peptidase II; KEGG: spe:Spro_0699 lipoprotein signal peptidase YP_004504056.1 KEGG: spe:Spro_0700 FKBP-type peptidylprolyl isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type YP_004504057.1 PFAM: LytB protein; TIGRFAM: LytB protein; HAMAP: LytB protein; KEGG: spe:Spro_0701 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_004504058.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_0702 LysR family transcriptional regulator YP_004504059.1 PFAM: Pyoverdine biosynthesis; KEGG: spe:Spro_0703 pyoverdine biosynthesis protein YP_004504060.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: spe:Spro_0704 taurine catabolism dioxygenase TauD/TfdA YP_004504061.1 KEGG: spe:Spro_0705 glycosyl transferase; TIGRFAM: UDP-glycosyltransferase, MGT; PFAM: Glycosyl transferase, family 28 YP_004504062.1 PFAM: Dihydrodipicolinate reductase; TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; HAMAP: Dihydrodipicolinate reductase; KEGG: spe:Spro_0712 dihydrodipicolinate reductase YP_004504063.1 TIGRFAM: Carbamoyl phosphate synthase, small subunit; KEGG: spe:Spro_0713 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal YP_004504064.1 TIGRFAM: Carbamoyl phosphate synthase, large subunit, glutamine-dependent; KEGG: spe:Spro_0714 carbamoyl phosphate synthase large subunit; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Carbamoyl phosphate synthetase, large subunit, oligomerisation; MGS-like YP_004504065.1 PFAM: Flavodoxin-like fold; KEGG: spe:Spro_0715 glutathione-regulated potassium-efflux system ancillary protein KefF YP_004504066.1 KEGG: spe:Spro_0716 glutathione-regulated potassium-efflux system protein KefC; TIGRFAM: K+/H+ exchanger; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal YP_004504067.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: spe:Spro_0717 lysine exporter protein LysE/YggA YP_004504068.1 PFAM: Protein of unknown function DUF1212; KEGG: spe:Spro_0718 hypothetical protein YP_004504069.1 HAMAP: UPF0442 protein yjjB; KEGG: spe:Spro_0719 hypothetical protein YP_004504070.1 KEGG: spe:Spro_0720 dihydrofolate reductase; PFAM: Dihydrofolate reductase region YP_004504071.1 PFAM: Protein of unknown function DUF839, bacterial; KEGG: spe:Spro_0721 hypothetical protein YP_004504072.1 PFAM: Metallophosphoesterase; TIGRFAM: Bis(5'-nucleosyl)-tetraphosphatase (symmetrical); HAMAP: Bis(5'-nucleosyl)-tetraphosphatase, symmetrical; KEGG: spe:Spro_0722 diadenosine tetraphosphatase YP_004504073.1 KEGG: spe:Spro_0723 ApaG protein; HAMAP: Protein ApaG; PFAM: ApaG YP_004504074.1 SMART: Ribosomal RNA adenine methylase transferase, N-terminal; TIGRFAM: Ribosomal RNA adenine dimethylase; KEGG: spe:Spro_0724 dimethyladenosine transferase; HAMAP: Ribosomal RNA adenine dimethylase; PFAM: Ribosomal RNA adenine methylase transferase YP_004504075.1 PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: spe:Spro_0725 4-hydroxythreonine-4-phosphate dehydrogenase YP_004504076.1 KEGG: spe:Spro_0726 peptidyl-prolyl cis-trans isomerase SurA; HAMAP: Chaperone surA; PFAM: SurA N-terminal; Peptidyl-prolyl cis-trans isomerase, PpiC-type YP_004504077.1 manually curated; HAMAP: LPS-assembly protein lptD; KEGG: spe:Spro_0727 organic solvent tolerance protein; PFAM: Organic solvent tolerance protein; OstA-like protein YP_004504078.1 HAMAP: DnaJ-like protein djlA; PFAM: Heat shock protein DnaJ, N-terminal; KEGG: spe:Spro_0728 Dna-J like membrane chaperone protein; SMART: Heat shock protein DnaJ, N-terminal YP_004504079.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: spe:Spro_0729 pseudouridine synthase YP_004504080.1 HAMAP: RNA polymerase-associated protein rapA; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; KEGG: spe:Spro_0730 ATP-dependent helicase HepA; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004504081.1 KEGG: spe:Spro_0731 DNA polymerase II; PFAM: DNA-directed DNA polymerase, family B, conserved region; DNA-directed DNA polymerase, family B, exonuclease domain; SMART: DNA-directed DNA polymerase, family B YP_004504082.1 PFAM: SNARE associated Golgi protein; KEGG: spe:Spro_0732 hypothetical protein YP_004504083.1 PFAM: Amino acid-binding ACT; KEGG: spe:Spro_0733 acetolactate synthase 1 regulatory subunit YP_004504084.1 TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; KEGG: spe:Spro_0734 acetolactate synthase catalytic subunit; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004504085.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, thiamine, ATP-binding protein; KEGG: spe:Spro_0735 thiamine transporter ATP-binding subunit; PFAM: ABC transporter-like YP_004504086.1 KEGG: spe:Spro_0736 thiamine transporter membrane protein; TIGRFAM: Thiamine ABC transporter, permease; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004504087.1 KEGG: spe:Spro_0737 thiamine transporter substrate binding subunit; TIGRFAM: Proteobacterial thiamine ABC transporter, periplasmic binding protein; Thiamine ABC transporter periplasmic binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004504088.1 KEGG: spe:Spro_0738 transcriptional regulator SgrR; HAMAP: HTH-type transcriptional regulator sgrR; PFAM: Bacterial extracellular solute-binding protein, family 5 YP_004504089.1 KEGG: spe:Spro_0739 hypothetical protein YP_004504090.1 KEGG: spe:Spro_0740 sugar efflux transporter; TIGRFAM: Sugar efflux; PFAM: Major facilitator superfamily MFS-1 YP_004504091.1 KEGG: spe:Spro_0741 anion transporter; TIGRFAM: Sodium/sulphate symporter; PFAM: Sodium/sulphate symporter YP_004504092.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit region; HAMAP: 3-isopropylmalate dehydratase, small subunit region; KEGG: spe:Spro_0742 isopropylmalate isomerase small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004504093.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit region; HAMAP: 3-isopropylmalate dehydratase, large subunit region; KEGG: spe:Spro_0743 isopropylmalate isomerase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YP_004504094.1 PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: Isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; KEGG: spe:Spro_0744 3-isopropylmalate dehydrogenase YP_004504095.1 TIGRFAM: Bacterial 2-isopropylmalate synthase; KEGG: spe:Spro_0745 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YP_004504096.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: spe:Spro_0746 leucine transcriptional activator YP_004504097.1 KEGG: spe:Spro_0747 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004504098.1 TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; KEGG: spe:Spro_0748 acetolactate synthase 3 catalytic subunit; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004504099.1 TIGRFAM: Acetolactate synthase, small subunit; KEGG: spe:Spro_0749 acetolactate synthase 3 regulatory subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT YP_004504100.1 TIGRFAM: D-fructose-responsive transcription factor; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; KEGG: spe:Spro_0750 DNA-binding transcriptional regulator FruR; SMART: HTH transcriptional regulator, LacI YP_004504101.1 PFAM: Protein of unknown function DUF1144; KEGG: spe:Spro_0751 hypothetical protein YP_004504102.1 TIGRFAM: MraZ; HAMAP: MraZ; KEGG: spe:Spro_0752 cell division protein MraZ; PFAM: MraZ domain YP_004504103.1 TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; KEGG: spe:Spro_0753 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW YP_004504104.1 KEGG: spe:Spro_0754 cell division protein FtsL; TIGRFAM: Cell division protein, FtsL -like; PFAM: Cell division protein FtsL YP_004504105.1 KEGG: spe:Spro_0755 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain YP_004504106.1 PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; HAMAP: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: spe:Spro_0756 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_004504107.1 TIGRFAM: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; KEGG: spe:Spro_0757 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal YP_004504108.1 TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; KEGG: spe:Spro_0758 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_004504109.1 TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; KEGG: spe:Spro_0759 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; PFAM: Mur ligase, central; Mur ligase, C-terminal YP_004504110.1 KEGG: spe:Spro_0760 cell division protein FtsW; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein YP_004504111.1 TIGRFAM: N-acetylglucosaminyltransferase, MurG; HAMAP: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; KEGG: spe:Spro_0761 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 28; Glycosyl transferase, family 28, C-terminal YP_004504112.1 PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; KEGG: spe:Spro_0762 UDP-N-acetylmuramate--L-alanine ligase YP_004504113.1 PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; TIGRFAM: D-alanine--D-alanine ligase; HAMAP: D-alanine--D-alanine ligase; KEGG: spe:Spro_0763 D-alanine--D-alanine ligase YP_004504114.1 PFAM: Cell division protein FtsQ; Polypeptide-transport-associated, FtsQ-type; KEGG: spe:Spro_0764 cell division protein FtsQ YP_004504115.1 TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA domain; KEGG: spe:Spro_0765 cell division protein FtsA; SMART: Cell division protein FtsA domain YP_004504116.1 KEGG: spe:Spro_0766 cell division protein FtsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain YP_004504117.1 TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; HAMAP: UDP-3-O-acyl N-acetylglucosamine deacetylase; KEGG: spe:Spro_0767 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase YP_004504118.1 PFAM: Protein of unknown function DUF721; KEGG: spe:Spro_0768 hypothetical protein YP_004504119.1 manually curated; HAMAP: Secretion monitor; KEGG: spe:Spro_0769 SecA regulator SecM; PFAM: Secretion monitor YP_004504120.1 TIGRFAM: SecA protein; HAMAP: Protein translocase subunit secA; KEGG: spe:Spro_0770 preprotein translocase subunit SecA; PFAM: SecA DEAD-like; SecA preprotein cross-linking region; SecA Wing/Scaffold; SEC-C motif YP_004504121.1 KEGG: spe:Spro_0771 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: Mutator MutT protein; PFAM: NUDIX hydrolase domain YP_004504122.1 KEGG: spe:Spro_0772 hypothetical protein; HAMAP: Uncharacterised protein family, zinc-binding; PFAM: Uncharacterised protein family, zinc-binding YP_004504123.1 KEGG: spe:Spro_0773 hypothetical protein; HAMAP: UPF0289 protein yacF; PFAM: Protein of unknown function DUF1342 YP_004504124.1 TIGRFAM: Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; KEGG: spe:Spro_0774 dephospho-CoA kinase YP_004504125.1 PFAM: IMP dehydrogenase/GMP reductase; TIGRFAM: Guanosine monophosphate reductase 1; HAMAP: GMP reductase; KEGG: spe:Spro_0775 guanosine 5'-monophosphate oxidoreductase YP_004504126.1 PFAM: Type II secretion system F domain; KEGG: spe:Spro_0776 type IV pilin biogenesis protein YP_004504127.1 PFAM: Type II secretion system protein E; KEGG: spe:Spro_0777 hypothetical protein YP_004504128.1 KEGG: spe:Spro_0778 major pilin subunit YP_004504129.1 TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; KEGG: spe:Spro_0779 quinolinate phosphoribosyltransferase; PFAM: Quinolinate phosphoribosyl transferase; Peptidoglycan binding-like YP_004504130.1 KEGG: rah:Rahaq_3711 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2 YP_004504131.1 KEGG: spe:Spro_0780 regulatory protein AmpE YP_004504132.1 PFAM: Aminotransferase class-III; TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; HAMAP: Glutamate-1-semialdehyde 2,1-aminomutase; KEGG: spe:Spro_0781 glutamate-1-semialdehyde aminotransferase YP_004504133.1 KEGG: spe:Spro_0782 chloride channel protein; HAMAP: H(+)/Cl(-) exchange transporter clcA; PFAM: Chloride channel, voltage gated YP_004504134.1 TIGRFAM: FeS cluster insertion; HAMAP: Iron--sulfur cluster insertion protein erpA; KEGG: spe:Spro_0783 iron-sulfur cluster assembly accessory protein; PFAM: FeS cluster biogenesis YP_004504135.1 PFAM: Uncharacterised protein family UPF0126; KEGG: spe:Spro_0785 hypothetical protein YP_004504136.1 KEGG: spe:Spro_0786 vitamin B12-transporter protein BtuF; HAMAP: Vitamin B12-binding protein; PFAM: Periplasmic binding protein YP_004504137.1 PFAM: Nucleoside phosphorylase; TIGRFAM: MTA/SAH nucleosidase; HAMAP: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; KEGG: spe:Spro_0787 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_004504138.1 KEGG: spe:Spro_0788 deoxyguanosinetriphosphate triphosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; HAMAP: Deoxyguanosinetriphosphate triphosphohydrolase, proteobacteria; SMART: Metal-dependent phosphohydrolase, HD region YP_004504139.1 SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: spe:Spro_0789 serine endoprotease; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF YP_004504140.1 KEGG: spe:Spro_0790 hybrid sensory histidine kinase BarA; PFAM: Protein of unknown function DUF2222; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region YP_004504141.1 TIGRFAM: RelA/SpoT protein; KEGG: spe:Spro_0792 GDP/GTP pyrophosphokinase; PFAM: RelA/SpoT; TGS; Amino acid-binding ACT YP_004504142.1 KEGG: spe:Spro_0793 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; PFAM: NTP pyrophosphohydrolase MazG, catalytic core YP_004504143.1 PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; TIGRFAM: CTP synthase; HAMAP: CTP synthase; KEGG: spe:Spro_0794 CTP synthetase YP_004504144.1 PFAM: Enolase, C-terminal; Enolase, N-terminal; TIGRFAM: Enolase; HAMAP: Enolase; KEGG: ypb:YPTS_0788 phosphopyruvate hydratase YP_004504145.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: spe:Spro_0796 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004504146.1 KEGG: spe:Spro_0797 hypothetical protein YP_004504147.1 TIGRFAM: Methionine gamma-lyase; KEGG: spe:Spro_0798 methionine gamma-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004504148.1 PFAM: Amino acid permease-associated region; KEGG: spe:Spro_0803 amino acid permease-associated protein YP_004504149.1 PFAM: Phenylalanine/histidine ammonia-lyase; TIGRFAM: Histidine ammonia-lyase; HAMAP: Histidine ammonia-lyase; KEGG: spe:Spro_0804 histidine ammonia-lyase YP_004504150.1 PFAM: Urocanase; TIGRFAM: Urocanase; HAMAP: Urocanate hydratase; KEGG: spe:Spro_0805 urocanate hydratase YP_004504151.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_0807 major facilitator transporter YP_004504152.1 PFAM: Radical SAM; KEGG: spe:Spro_0808 radical SAM domain-containing protein YP_004504153.1 KEGG: ypb:YPTS_0791 queuosine biosynthesis protein QueD; TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase-related YP_004504154.1 PFAM: FAD-binding, type 1; Flavodoxin/nitric oxide synthase; Oxidoreductase FAD/NAD(P)-binding; TIGRFAM: Sulphite reductase [NADPH] flavoprotein, alpha chain; HAMAP: Sulfite reductase [NADPH] flavoprotein alpha-component; KEGG: spe:Spro_0810 sulfite reductase subunit alpha YP_004504155.1 PFAM: Nitrite/sulphite reductase 4Fe-4S region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; TIGRFAM: Sulphite reductase (NADPH) hemoprotein, beta subunit; HAMAP: Sulfite reductase [NADPH] hemoprotein beta-component; KEGG: spe:Spro_0811 sulfite reductase subunit beta YP_004504156.1 PFAM: Phosphoadenosine phosphosulphate reductase; TIGRFAM: Phosphoadenosine phosphosulphate reductase thioredoxin; Phosphoadenosine phosphosulphate reductase CysH-type; HAMAP: Phosphoadenosine phosphosulfate reductase; KEGG: spe:Spro_0812 phosphoadenosine phosphosulfate reductase YP_004504157.1 PFAM: Peptidase M28; KEGG: spe:Spro_0815 alkaline phosphatase isozyme conversion aminopeptidase YP_004504158.1 PFAM: Tetrapyrrole methylase; Sirohaem synthase, dimerisation domain; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; Sirohaem synthase, N-terminal; HAMAP: Siroheme synthase; KEGG: spe:Spro_0817 uroporphyrin-III C-methyltransferase YP_004504159.1 PFAM: Phosphoadenosine phosphosulphate reductase; TIGRFAM: Sulphate adenylyltransferase, small subunit; HAMAP: Sulfate adenylyltransferase subunit 2; KEGG: spe:Spro_0818 sulfate adenylyltransferase subunit 2 YP_004504160.1 PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; TIGRFAM: Sulphate adenylyltransferase, large subunit; Small GTP-binding protein; HAMAP: Sulfate adenylyltransferase subunit 1; KEGG: spe:Spro_0819 sulfate adenylyltransferase subunit 1 YP_004504161.1 PFAM: Adenylylsulphate kinase, C-terminal; TIGRFAM: Adenylylsulphate kinase, C-terminal; HAMAP: Adenylyl-sulfate kinase; KEGG: spe:Spro_0820 adenylyl-sulfate kinase YP_004504162.1 KEGG: spe:Spro_0821 hypothetical protein YP_004504163.1 KEGG: spe:Spro_0825 cell division protein FtsB; HAMAP: Cell division protein ftsB-like protein; PFAM: Septum formation initiator YP_004504164.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; HAMAP: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; KEGG: spe:Spro_0826 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_004504165.1 TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; KEGG: spe:Spro_0827 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core YP_004504166.1 TIGRFAM: Pseudouridine synthase, TruD; HAMAP: tRNA pseudouridine synthase D; KEGG: spe:Spro_0828 tRNA pseudouridine synthase D; PFAM: Pseudouridine synthase, TruD YP_004504167.1 PFAM: Survival protein SurE-like phosphatase/nucleotidase; TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; HAMAP: Multifunctional protein surE; KEGG: spe:Spro_0829 stationary phase survival protein SurE YP_004504168.1 PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; HAMAP: Protein-L-isoaspartate O-methyltransferase; KEGG: spe:Spro_0830 protein-L-isoaspartate O-methyltransferase YP_004504169.1 KEGG: spe:Spro_0831 lipoprotein NlpD; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004504170.1 KEGG: spe:Spro_0832 RNA polymerase sigma factor RpoS; TIGRFAM: RNA polymerase sigma factor RpoS, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 4 YP_004504171.1 SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; TIGRFAM: DNA mismatch repair protein MutS, type 1; KEGG: spe:Spro_0833 DNA mismatch repair protein MutS; HAMAP: DNA mismatch repair protein MutS, type 1; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, clamp YP_004504172.1 KEGG: spe:Spro_0834 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; TIGRFAM: Phosphotransferase system, EIIB component, type 3, subgroup; PFAM: Phosphotransferase system, lactose/cellobiose-specific IIB subunit YP_004504173.1 TIGRFAM: Phosphotransferase system, cellobiose-specific IIC component; Phosphotransferase system, lactose/cellobiose IIC component; KEGG: spe:Spro_0835 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; PFAM: Phosphotransferase system, EIIC YP_004504174.1 KEGG: spe:Spro_0836 beta-glucosidase; PFAM: Glycoside hydrolase, family 1 YP_004504175.1 KEGG: spe:Spro_0837 DNA-binding transcriptional regulator ChbR; PFAM: Helix-turn-helix, AraC type; Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC domain YP_004504176.1 KEGG: spe:Spro_0838 hypothetical protein; HAMAP: UPF0249 protein chbG; PFAM: YdjC-like protein YP_004504177.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_0839 major facilitator transporter YP_004504178.1 KEGG: spe:Spro_0840 competence damage-inducible protein A; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal YP_004504179.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA recombination and repair protein RecA; KEGG: spe:Spro_0841 recombinase A; HAMAP: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA YP_004504180.1 KEGG: spe:Spro_0842 recombination regulator RecX; HAMAP: Regulatory protein recX; PFAM: Regulatory protein RecX YP_004504181.1 KEGG: spe:Spro_0843 alanyl-tRNA synthetase; TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1 YP_004504182.1 KEGG: xne:XNC1_1263 carbon storage regulator, post-translational activator of flhDC expression, regulates biofilm formation, RNA-binding; TIGRFAM: Carbon storage regulator; PFAM: Carbon storage regulator YP_004504183.1 KEGG: spe:Spro_0845 fructose-1-phosphatase; TIGRFAM: Beta-phosphoglucomutase hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004504184.1 KEGG: spe:Spro_0846 hypothetical protein YP_004504185.1 TIGRFAM: Glutamate--cysteine ligase, monofunctional; HAMAP: Glutamate--cysteine ligase; KEGG: spe:Spro_0847 glutamate--cysteine ligase; PFAM: Glutamate--cysteine ligase YP_004504186.1 HAMAP: S-ribosylhomocysteinase (LuxS); KEGG: spe:Spro_0848 S-ribosylhomocysteinase; PFAM: S-ribosylhomocysteinase (LuxS) YP_004504187.1 PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated region; KEGG: spe:Spro_0849 hypothetical protein YP_004504188.1 PFAM: Cytochrome c assembly protein; KEGG: spe:Spro_0850 cytochrome c assembly protein YP_004504189.1 TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; KEGG: spe:Spro_0851 signal recognition particle protein; SMART: ATPase, AAA+ type, core YP_004504190.1 KEGG: spe:Spro_0852 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16; PFAM: Ribosomal protein S16 YP_004504191.1 TIGRFAM: 16S rRNA processing protein RimM; HAMAP: 16S rRNA processing protein RimM; KEGG: spe:Spro_0853 16S rRNA-processing protein RimM; PFAM: RimM protein; PRC-barrel YP_004504192.1 PFAM: tRNA (guanine-N1-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: spe:Spro_0854 tRNA (guanine-N(1)-)-methyltransferase YP_004504193.1 TIGRFAM: Ribosomal protein L19; HAMAP: Ribosomal protein L19; KEGG: spe:Spro_0855 50S ribosomal protein L19; PFAM: Ribosomal protein L19 YP_004504194.1 PFAM: Phage transcriptional activator, Ogr/Delta; KEGG: spe:Spro_0856 transcriptional activator Ogr/delta YP_004504195.1 PFAM: Phage late control D; KEGG: yps:YPTB1739 D protein bacteriophage 186 and P2 YP_004504196.1 PFAM: Phage P2 GpU; KEGG: spe:Spro_0858 P2 GpU family protein YP_004504197.1 KEGG: spe:Spro_0859 TP901 family phage tail tape measure protein; TIGRFAM: Phage tail tape measure protein TP901, core region; PFAM: Phage tail tape measure protein TP901, core region YP_004504198.1 KEGG: spe:Spro_0860 P2 GpE family protein; manually curated; PFAM: Phage P2 GpE YP_004504199.1 PFAM: Phage tail E; KEGG: spe:Spro_0861 tail E family protein YP_004504200.1 KEGG: spe:Spro_0862 phage major tail tube protein; TIGRFAM: Phage major tail tube protein; PFAM: Phage major tail tube protein YP_004504201.1 KEGG: spe:Spro_0863 tail sheath protein YP_004504202.1 PFAM: Phage tail assembly chaperone gp38; KEGG: pam:PANA_3405 hypothetical protein YP_004504203.1 PFAM: Phage tail fiber repeat 2; KEGG: spe:Spro_0865 tail fiber repeat 2-containing protein YP_004504204.1 KEGG: spe:Spro_0866 phage tail protein I; TIGRFAM: Phage tail protein I; PFAM: Phage tail protein I YP_004504205.1 PFAM: Baseplate assembly protein J-like, predicted; KEGG: spe:Spro_0867 baseplate J family protein YP_004504206.1 PFAM: GPW/gp25; KEGG: spe:Spro_0868 gpW/GP25 family protein YP_004504207.1 KEGG: spe:Spro_0869 phage baseplate assembly protein V; TIGRFAM: Phage-related baseplate assembly protein V; PFAM: Phage baseplate assembly protein V YP_004504208.1 PFAM: P2 phage tail completion R; KEGG: spe:Spro_0870 P2 phage tail completion R family protein YP_004504209.1 PFAM: Glycoside hydrolase, family 24; KEGG: spe:Spro_0871 glycoside hydrolase YP_004504210.1 KEGG: spe:Spro_0872 prophage Hp1 family holin YP_004504211.1 PFAM: Phage tail protein X; KEGG: spe:Spro_0873 tail X family protein YP_004504212.1 KEGG: rah:Rahaq_0725 hypothetical protein YP_004504213.1 KEGG: spe:Spro_0875 TraR/DksA family transcriptional regulator; manually curated; TIGRFAM: Zinc finger, C4 DksA/TraR-type YP_004504214.1 KEGG: spe:Spro_0876 gpB bacteriophage P2-like protein YP_004504215.1 PFAM: Bacteriophage CI repressor; KEGG: spe:Spro_0877 CI repressor YP_004504216.1 PFAM: Protein of unknown function DUF481; KEGG: spe:Spro_0878 hypothetical protein YP_004504217.1 TIGRFAM: DHAP synthase, class 1; KEGG: spe:Spro_0879 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_004504218.1 KEGG: spe:Spro_0880 bifunctional chorismate mutase/prephenate dehydrogenase; TIGRFAM: Chorismate mutase, T-protein; PFAM: Chorismate mutase, type II; Prephenate dehydrogenase YP_004504219.1 KEGG: spe:Spro_0881 bifunctional chorismate mutase/prephenate dehydratase; TIGRFAM: Chorismate mutase, gammaproteobacteria; PFAM: Prephenate dehydratase; Chorismate mutase, type II YP_004504220.1 KEGG: spe:Spro_0882 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein YP_004504221.1 TIGRFAM: Outer membrane assembly lipoprotein YfiO; KEGG: spe:Spro_0883 outer membrane protein assembly complex subunit YfiO YP_004504222.1 TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: spe:Spro_0884 23S rRNA pseudouridine synthase D; SMART: RNA-binding S4 YP_004504223.1 KEGG: spe:Spro_0885 hypothetical protein; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase, laccase YP_004504224.1 TIGRFAM: Chaperonin ClpB; PFAM: ATPase associated with various cellular activities, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: spe:Spro_0886 protein disaggregation chaperone; SMART: ATPase, AAA+ type, core YP_004504225.1 KEGG: spe:Spro_0888 hypothetical protein YP_004504226.1 KEGG: spe:Spro_0889 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004504227.1 KEGG: spe:Spro_0890 acyl carrier protein YP_004504228.1 PFAM: Phosphopantetheine-binding; KEGG: spe:Spro_0891 acyl carrier protein YP_004504229.1 KEGG: spe:Spro_0892 hypothetical protein YP_004504230.1 PFAM: AMP-dependent synthetase/ligase; KEGG: spe:Spro_0893 AMP-binding protein YP_004504231.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: spe:Spro_0894 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_004504232.1 PFAM: Glycosyl transferase, family 2; KEGG: spe:Spro_0895 glycosyl transferase YP_004504233.1 PFAM: Thioesterase superfamily; KEGG: spe:Spro_0896 thioesterase superfamily protein YP_004504234.1 KEGG: spe:Spro_0897 outer-membrane lipoprotein carrier protein YP_004504235.1 KEGG: spe:Spro_0898 hypothetical protein YP_004504236.1 KEGG: spe:Spro_0899 lipoprotein YP_004504237.1 KEGG: spe:Spro_0900 3-oxoacyl-(acyl carrier protein) synthase I; PFAM: Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, N-terminal YP_004504238.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: spe:Spro_0901 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_004504239.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase, KEGG: spe:Spro_0902 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004504240.1 KEGG: spe:Spro_0903 3-oxoacyl-(acyl carrier protein) synthase II; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal YP_004504241.1 KEGG: spe:Spro_0904 2,5-diketo-D-gluconate reductase B; PFAM: Aldo/keto reductase YP_004504242.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_0905 LysR family transcriptional regulator YP_004504243.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_0906 major facilitator transporter YP_004504244.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: spe:Spro_0907 hypothetical protein YP_004504245.1 manually curated; PFAM: Lytic transglycosylase-like, catalytic; MLTD-N; Peptidoglycan-binding lysin domain; KEGG: spe:Spro_0908 membrane-bound lytic murein transglycosylase D; SMART: Peptidoglycan-binding Lysin subgroup YP_004504246.1 KEGG: spe:Spro_0909 hydroxyacylglutathione hydrolase; TIGRFAM: Hydroxyacylglutathione hydrolase; HAMAP: Hydroxyacylglutathione hydrolase YP_004504247.1 PFAM: Methyltransferase type 11; KEGG: spe:Spro_0910 type 11 methyltransferase YP_004504248.1 HAMAP: Ribonuclease H; KEGG: spe:Spro_0911 ribonuclease H; PFAM: Ribonuclease H YP_004504249.1 SMART: Exonuclease; TIGRFAM: DNA polymerase 3, epsilon subunit; DNA polymerase III, epsilon subunit; KEGG: spe:Spro_0912 DNA polymerase III subunit epsilon; PFAM: Exonuclease, RNase T/DNA polymerase III YP_004504250.1 PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: spe:Spro_0913 cytosine/purines uracil thiamine allantoin permease YP_004504251.1 KEGG: spe:Spro_0914 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004504252.1 KEGG: spe:Spro_0915 Asp/Glu racemase; PFAM: Asp/Glu/hydantoin racemase YP_004504253.1 TIGRFAM: urate catabolism protein; KEGG: spe:Spro_0916 chitin deacetylase; PFAM: Polysaccharide deacetylase YP_004504254.1 KEGG: spe:Spro_0917 XRE family transcriptional regulator YP_004504255.1 PFAM: Protein of unknown function DUF891; KEGG: gca:Galf_2192 hypothetical protein YP_004504256.1 KEGG: spe:Spro_0918 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004504257.1 KEGG: spe:Spro_0919 L-lysine 6-monooxygenase (NADPH) YP_004504258.1 PFAM: IucA/IucC; KEGG: spe:Spro_0920 IucA/IucC family protein YP_004504259.1 PFAM: Siderophore biosynthesis protein, conserved region; KEGG: spe:Spro_0921 aerobactin siderophore biosynthesis protein IucB YP_004504260.1 PFAM: IucA/IucC; KEGG: spe:Spro_0922 IucA/IucC family protein YP_004504261.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_0923 major facilitator transporter YP_004504262.1 PFAM: FAD-binding 9, siderophore-interacting; Siderophore-interacting protein; KEGG: spe:Spro_0924 FAD-binding 9 siderophore-interacting domain-containing protein YP_004504263.1 KEGG: spe:Spro_0927 hypothetical protein YP_004504264.1 KEGG: spe:Spro_0928 amidase; TIGRFAM: Amidohydrolase, AtzE type; PFAM: Amidase YP_004504265.1 KEGG: spe:Spro_0929 hypothetical protein YP_004504266.1 KEGG: spe:Spro_0930 gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase YP_004504267.1 PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: spe:Spro_0931 RpiR family transcriptional regulator YP_004504268.1 KEGG: spe:Spro_0932 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004504269.1 KEGG: spe:Spro_0933 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004504270.1 KEGG: spe:Spro_0934 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004504271.1 PFAM: ABC transporter-like; KEGG: spe:Spro_0935 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004504272.1 KEGG: spe:Spro_0936 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004504273.1 TIGRFAM: Amidase, hydantoinase/carbamoylase; KEGG: spe:Spro_0937 allantoate amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004504274.1 KEGG: spe:Spro_0938 urate oxidase, N-terminal; TIGRFAM: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 2; PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase YP_004504275.1 KEGG: spe:Spro_0939 transthyretin; TIGRFAM: Hydroxyisourate hydrolase; PFAM: Transthyretin/hydroxyisourate hydrolase YP_004504276.1 KEGG: eta:ETA_26130 xanthine/uracil permease; TIGRFAM: Xanthine permease; Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease YP_004504277.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: spe:Spro_0940 hypothetical protein YP_004504278.1 KEGG: spe:Spro_0941 aminotransferase; PFAM: Aminotransferase, class I/II YP_004504279.1 PFAM: Class II aldolase/adducin, N-terminal; TIGRFAM: Methylthioribulose-1-phosphate dehydratase; HAMAP: Methylthioribulose-1-phosphate dehydratase; KEGG: spe:Spro_0942 methylthioribulose-1-phosphate dehydratase YP_004504280.1 PFAM: Haloacid dehalogenase-like hydrolase; TIGRFAM: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; HAMAP: Enolase-phosphatase E1; KEGG: spe:Spro_0943 2,3-diketo-5-methylthio-1-phosphopentane phosphatase YP_004504281.1 HAMAP: Acireductone dioxygenase; KEGG: spe:Spro_0944 acireductone dioxygenase ARD; PFAM: Acireductone dioxygenase, ARD YP_004504282.1 PFAM: Initiation factor 2B related; TIGRFAM: translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; Initiation factor 2B alpha/beta/delta; HAMAP: Methylthioribose-1-phosphate isomerase; KEGG: spe:Spro_0945 eIF-2B alpha/beta/delta-related hypothetical protein YP_004504283.1 PFAM: Aminoglycoside phosphotransferase; TIGRFAM: Methylthioribose kinase; HAMAP: Methylthioribose kinase; KEGG: spe:Spro_0946 methylthioribose kinase YP_004504284.1 PFAM: Hok/gef cell toxic protein; KEGG: spe:Spro_0948 Hok/gef cell toxic protein YP_004504285.1 KEGG: pay:PAU_03376 hypothetical protein YP_004504286.1 PFAM: Hok/gef cell toxic protein; KEGG: spe:Spro_0948 Hok/gef cell toxic protein YP_004504287.1 PFAM: Protein of unknown function DUF1974; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: spe:Spro_0949 acyl-CoA dehydrogenase YP_004504288.1 KEGG: spe:Spro_0950 phosphoheptose isomerase; TIGRFAM: Phosphoheptose isomerase, subgroup; PFAM: Sugar isomerase (SIS) YP_004504289.1 PFAM: Glutamine amidotransferase, class-II; KEGG: spe:Spro_0951 glutamine amidotransferase class-II YP_004504290.1 PFAM: YkuD domain; KEGG: spe:Spro_0952 hypothetical protein YP_004504291.1 TIGRFAM: Na-translocating NADH-quinone reductase subunit A; HAMAP: Na(+)-translocating NADH-quinone reductase subunit A; KEGG: spe:Spro_0953 Na(+)-translocating NADH-quinone reductase subunit A; PFAM: Na-translocating NADH-quinone reductase subunit A YP_004504292.1 TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit; HAMAP: Na(+)-translocating NADH-quinone reductase subunit B; KEGG: spe:Spro_0954 Na(+)-translocating NADH-quinone reductase subunit B; PFAM: NADH-quinone reductase NQR2/RnfD YP_004504293.1 TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit; HAMAP: Na(+)-translocating NADH-quinone reductase subunit C; KEGG: spe:Spro_0955 Na(+)-translocating NADH-quinone reductase subunit C; PFAM: FMN-binding YP_004504294.1 TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit; HAMAP: Na(+)-translocating NADH-quinone reductase subunit D; KEGG: spe:Spro_0956 Na(+)-translocating NADH-quinone reductase subunit D; PFAM: Electron transport complex, Rnf/Nqr YP_004504295.1 TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit; HAMAP: Na(+)-translocating NADH-quinone reductase subunit E; KEGG: spe:Spro_0957 Na(+)-translocating NADH-quinone reductase subunit E; PFAM: Electron transport complex, Rnf/Nqr YP_004504296.1 PFAM: Oxidoreductase FAD/NAD(P)-binding; Ferredoxin; Oxidoreductase FAD-binding region; TIGRFAM: NADH-quinone reductase, Na(+)-translocating, F subunit; HAMAP: Na(+)-translocating NADH-quinone reductase subunit F; KEGG: spe:Spro_0958 Na(+)-translocating NADH-quinone reductase subunit F YP_004504297.1 PFAM: ApbE-like lipoprotein; KEGG: spe:Spro_0959 ApbE family lipoprotein YP_004504298.1 PFAM: Protein of unknown function DUF539; KEGG: spe:Spro_0960 hypothetical protein YP_004504299.1 PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: spe:Spro_0961 glycerophosphoryl diester phosphodiesterase YP_004504300.1 HAMAP: DNA polymerase IV; KEGG: spe:Spro_0962 DNA polymerase IV; PFAM: DNA-repair protein, UmuC-like YP_004504301.1 TIGRFAM: Peptidase M20C, Xaa-His dipeptidase; KEGG: spe:Spro_0963 aminoacyl-histidine dipeptidase; PFAM: Peptidase M20, dimerisation; Peptidase M20 YP_004504302.1 HAMAP: Xanthine phosphoribosyltransferase; KEGG: spe:Spro_0964 xanthine-guanine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_004504303.1 HAMAP: Esterase frsA; KEGG: spe:Spro_0965 fermentation/respiration switch protein YP_004504304.1 KEGG: spe:Spro_0966 DNA-binding transcriptional regulator Crl; HAMAP: Sigma factor-binding protein crl; PFAM: Transcriptional regulator Crl YP_004504305.1 SMART: Pseudouridine synthase/archaeosine transglycosylase; TIGRFAM: Glutamate 5-kinase, ProB-related; KEGG: spe:Spro_0967 gamma-glutamyl kinase; HAMAP: Glutamate 5-kinase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase YP_004504306.1 PFAM: Aldehyde dehydrogenase; TIGRFAM: Gamma-glutamyl phosphate reductase GPR; HAMAP: Glutamate-5-semialdehyde dehydrogenase; KEGG: spe:Spro_0968 gamma-glutamyl phosphate reductase YP_004504307.1 TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; KEGG: ilo:IL2519 deoxyguanosinetriphosphate triphosphohydrolase-like protein; SMART: Metal-dependent phosphohydrolase, HD region YP_004504308.1 KEGG: eca:ECA0965 regulatory protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004504309.1 KEGG: spe:Spro_0971 hypothetical protein YP_004504310.1 KEGG: spe:Spro_0972 cytochrome b561 YP_004504311.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: spe:Spro_0973 extracellular solute-binding protein YP_004504312.1 PFAM: Condensation domain; KEGG: spe:Spro_0974 condensation domain-containing protein YP_004504313.1 TIGRFAM: Amino acid adenylation; KEGG: pay:PAU_00882 six-domain nonribosomal peptide synthetase; PFAM: AMP-dependent synthetase/ligase; Non-ribosomal peptide synthetase; Condensation domain YP_004504314.1 KEGG: pay:PAU_00881 six-domain nonribosomal peptide synthetase; PFAM: Condensation domain; Non-ribosomal peptide synthetase YP_004504315.1 KEGG: spe:Spro_0977 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004504316.1 KEGG: spe:Spro_0978 condensation domain-containing protein; PFAM: Condensation domain; Phosphopantetheine-binding YP_004504317.1 KEGG: spe:Spro_0979 hypothetical protein YP_004504318.1 KEGG: spe:Spro_0981 hypothetical protein YP_004504319.1 KEGG: spe:Spro_0982 hypothetical protein YP_004504320.1 PFAM: DSBA oxidoreductase; KEGG: spe:Spro_0983 DsbA oxidoreductase YP_004504321.1 KEGG: spe:Spro_0984 DNA-binding transcriptional activator FeaR; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004504322.1 KEGG: spe:Spro_0985 phenylacetaldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004504323.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: spe:Spro_0986 leucine export protein LeuE YP_004504324.1 KEGG: spe:Spro_0987 tellurite resistance protein TehB; TIGRFAM: Tellurite resistance methyltransferase, TehB; PFAM: Tellurite resistance methyltransferase, TehB, core; Protein of unknown function DUF1971 YP_004504325.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_4829 GCN5-related N-acetyltransferase YP_004504326.1 PFAM: Protein of unknown function DUF1615; KEGG: spe:Spro_0988 hypothetical protein YP_004504327.1 PFAM: Glutathione S-transferase, N-terminal; KEGG: spe:Spro_0989 glutathione S-transferase domain-containing protein YP_004504328.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: spe:Spro_0990 alpha/beta hydrolase fold domain-containing protein YP_004504329.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_0991 LysR family transcriptional regulator YP_004504330.1 KEGG: spe:Spro_0992 thiamine pyrophosphate binding domain-containing protein; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004504331.1 PFAM: Antimicrobial peptide resistance/lipid A acylation PagP; KEGG: spe:Spro_0993 palmitoyl transferase YP_004504332.1 PFAM: Protein of unknown function DUF2501; KEGG: spe:Spro_0994 hypothetical protein YP_004504333.1 PFAM: Protein of unknown function DUF333; KEGG: spe:Spro_0995 hypothetical protein YP_004504334.1 KEGG: spe:Spro_0996 hypothetical protein YP_004504335.1 KEGG: spe:Spro_0997 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004504336.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: spe:Spro_0998 glyoxalase/bleomycin resistance protein/dioxygenase YP_004504337.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_0999 LysR family transcriptional regulator YP_004504338.1 PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: spe:Spro_1000 pirin domain-containing protein YP_004504339.1 PFAM: Isochorismatase-like; KEGG: spe:Spro_1001 isochorismatase hydrolase YP_004504340.1 KEGG: spe:Spro_1002 hypothetical protein YP_004504341.1 PFAM: thiol-disulphide oxidoreductase DCC; KEGG: spe:Spro_1003 thiol-disulfide oxidoreductase DCC YP_004504342.1 KEGG: spe:Spro_1004 hypothetical protein YP_004504343.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_1005 GCN5-related N-acetyltransferase YP_004504344.1 PFAM: Protein of unknown function DUF2076; KEGG: spe:Spro_1006 periplasmic ligand-binding sensor protein YP_004504345.1 SMART: Helix-turn-helix type 3; KEGG: spe:Spro_1007 XRE family transcriptional regulator YP_004504346.1 PFAM: Methyltransferase type 11; KEGG: spe:Spro_1008 type 11 methyltransferase YP_004504347.1 TIGRFAM: Aquaporin; HAMAP: Aquaporin Z; KEGG: spe:Spro_1009 aquaporin Z; PFAM: Major intrinsic protein YP_004504348.1 KEGG: spe:Spro_1010 hypothetical protein YP_004504349.1 PFAM: Bacterial low temperature requirement A; KEGG: spe:Spro_1011 low temperature requirement A YP_004504350.1 PFAM: Protein of unknown function DUF1471; KEGG: spe:Spro_1012 hypothetical protein YP_004504351.1 KEGG: spe:Spro_1013 methyltransferase YP_004504352.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_1014 GCN5-related N-acetyltransferase YP_004504353.1 PFAM: Periplasmic binding protein; KEGG: spe:Spro_1015 periplasmic binding protein YP_004504354.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_1017 GCN5-related N-acetyltransferase YP_004504355.1 HAMAP: Shikimate kinase; KEGG: spe:Spro_1018 shikimate kinase II; PFAM: Shikimate kinase YP_004504356.1 KEGG: dze:Dd1591_3492 aldo/keto reductase; PFAM: Aldo/keto reductase YP_004504357.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: eca:ECA3294 TetR family transcriptional regulator YP_004504358.1 KEGG: spe:Spro_1019 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004504359.1 KEGG: spe:Spro_1020 hypothetical protein YP_004504360.1 KEGG: spe:Spro_1021 hypothetical protein YP_004504361.1 KEGG: spe:Spro_1026 hypothetical protein; HAMAP: Protein of unknown function DUF1255; PFAM: Protein of unknown function DUF1255 YP_004504362.1 KEGG: spe:Spro_1027 recombination associated protein; HAMAP: Recombination-associated protein rdgC; PFAM: exonuclease, RdgC YP_004504363.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; KEGG: spe:Spro_1028 multi-sensor hybrid histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; PAS; Signal transduction response regulator, receiver region YP_004504364.1 PFAM: ABC transporter-like; KEGG: spe:Spro_1029 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004504365.1 PFAM: Bacterial inner-membrane translocator; KEGG: spe:Spro_1030 monosaccharide-transporting ATPase YP_004504366.1 PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: spe:Spro_1031 periplasmic binding protein/LacI transcriptional regulator YP_004504367.1 PFAM: Protein of unknown function DUF1498; KEGG: spe:Spro_1032 hypothetical protein YP_004504368.1 TIGRFAM: Ketose-bisphosphate aldolase, class-II; KEGG: spe:Spro_1033 hypothetical protein; PFAM: Ketose-bisphosphate aldolase, class-II YP_004504369.1 PFAM: Carbohydrate/purine kinase; KEGG: spe:Spro_1034 ribokinase-like domain-containing protein YP_004504370.1 KEGG: spe:Spro_1035 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004504371.1 PFAM: ROK; KEGG: spe:Spro_1036 ROK family protein YP_004504372.1 KEGG: spe:Spro_1037 prevent-host-death family protein YP_004504373.1 PFAM: PilT protein, N-terminal; KEGG: spe:Spro_1038 PilT domain-containing protein YP_004504374.1 PFAM: CAT RNA-binding region; PRD; KEGG: pwa:Pecwa_2743 transcriptional antiterminator, BglG YP_004504375.1 KEGG: pao:Pat9b_0891 ethanolamine transporter; TIGRFAM: Ethanolamine permease; PFAM: Amino acid permease-associated region YP_004504376.1 KEGG: spe:Spro_1039 exonuclease SbcC; TIGRFAM: Exonuclease SbcC; PFAM: RecF/RecN/SMC protein, N-terminal YP_004504377.1 KEGG: spe:Spro_1040 exonuclease subunit SbcD; TIGRFAM: Exonuclease SbcD; PFAM: Metallophosphoesterase YP_004504378.1 TIGRFAM: Signal transduction response regulator, phosphate regulon transcriptional regulatory protein phoB; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; KEGG: spe:Spro_1041 two component transcriptional regulator; SMART: Signal transduction response regulator, receiver region YP_004504379.1 TIGRFAM: Signal transduction histidine kinase, phosphate regulon sensor PhoR; PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; KEGG: spe:Spro_1042 phosphate regulon sensor protein; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS YP_004504380.1 TIGRFAM: Phosphate binding protein; KEGG: spe:Spro_1043 phosphate binding protein YP_004504381.1 PFAM: Methionine synthase, vitamin-B12 independent; KEGG: spe:Spro_1044 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase YP_004504382.1 manually curated; TIGRFAM: Branched-chain amino acid transport system II carrier protein; KEGG: spe:Spro_1045 branched-chain amino acid transport system II carrier protein; PFAM: Branched-chain amino acid transport system II carrier protein YP_004504383.1 PFAM: Amino acid permease-associated region; KEGG: spe:Spro_1046 proline-specific permease YP_004504384.1 KEGG: spe:Spro_1047 hypothetical protein YP_004504385.1 PFAM: Mechanosensitive ion channel MscS; KEGG: spe:Spro_1048 mechanosensitive ion channel MscS YP_004504386.1 PFAM: Glycosyl hydrolase, family 13, catalytic region; Glycoside hydrolase, family 13, N-terminal Ig-like region; KEGG: spe:Spro_1049 maltodextrin glucosidase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region YP_004504387.1 TIGRFAM: Gamma-glutamyltranspeptidase; KEGG: spe:Spro_1057 gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase YP_004504388.1 KEGG: spe:Spro_1058 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal YP_004504389.1 HAMAP: Acyl carrier protein phosphodiesterase; KEGG: spe:Spro_1059 (acyl-carrier-protein) phosphodiesterase; PFAM: Acyl carrier protein phosphodiesterase YP_004504390.1 TIGRFAM: Queuosine biosynthesis protein; HAMAP: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; KEGG: spe:Spro_1060 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein YP_004504391.1 PFAM: Queuine/other tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; KEGG: spe:Spro_1061 queuine tRNA-ribosyltransferase YP_004504392.1 KEGG: spe:Spro_1062 preprotein translocase subunit YajC; TIGRFAM: YajC; PFAM: YajC YP_004504393.1 KEGG: spe:Spro_1063 preprotein translocase subunit SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; PFAM: SecD/SecF/SecDF export membrane protein YP_004504394.1 KEGG: spe:Spro_1064 preprotein translocase subunit SecF; TIGRFAM: SecF protein; SecD/SecF/SecDF export membrane protein; PFAM: SecD/SecF/SecDF export membrane protein YP_004504395.1 KEGG: spe:Spro_1070 hypothetical protein YP_004504396.1 KEGG: spe:Spro_1071 transcriptional regulator NrdR; TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone YP_004504397.1 TIGRFAM: Riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase, C-terminal; KEGG: spe:Spro_1072 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding YP_004504398.1 TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: spe:Spro_1073 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase YP_004504399.1 TIGRFAM: NusB antitermination factor; HAMAP: N utilization substance protein B-like protein; KEGG: spe:Spro_1074 transcription antitermination protein NusB; PFAM: NusB/RsmB/TIM44 YP_004504400.1 TIGRFAM: Thiamine-monophosphate kinase; KEGG: spe:Spro_1075 thiamine monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal YP_004504401.1 KEGG: spe:Spro_1076 phosphatidylglycerophosphatase A; PFAM: Phosphatidylglycerophosphatase A YP_004504402.1 KEGG: spe:Spro_1077 aldo/keto reductase; PFAM: Aldo/keto reductase YP_004504403.1 PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; TIGRFAM: Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; KEGG: spe:Spro_1078 1-deoxy-D-xylulose-5-phosphate synthase YP_004504404.1 KEGG: spe:Spro_1079 geranyltranstransferase; PFAM: Polyprenyl synthetase YP_004504405.1 TIGRFAM: Exonuclease VII, small subunit; HAMAP: Exonuclease VII, small subunit; KEGG: spe:Spro_1080 exodeoxyribonuclease VII small subunit; PFAM: Exonuclease VII, small subunit YP_004504406.1 TIGRFAM: Thiamine biosynthesis protein; HAMAP: Thiamine biosynthesis protein; KEGG: spe:Spro_1081 thiamine biosynthesis protein ThiI; PFAM: Thiamine biosynthesis protein, C-terminal; THUMP YP_004504407.1 KEGG: spe:Spro_1082 DJ-1 family protein; TIGRFAM: DJ-1; PFAM: ThiJ/PfpI YP_004504408.1 TIGRFAM: Ketopantoate reductase ApbA/PanE; KEGG: spe:Spro_1083 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, C-terminal; Ketopantoate reductase ApbA/PanE, N-terminal YP_004504409.1 KEGG: spe:Spro_1084 nucleotide-binding protein; HAMAP: UPF0234 protein yajQ; PFAM: Protein of unknown function DUF520 YP_004504410.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_1085 major facilitator transporter YP_004504411.1 TIGRFAM: Protohaem IX farnesyltransferase; HAMAP: Protohaem IX farnesyltransferase; KEGG: spe:Spro_1086 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase YP_004504412.1 KEGG: spe:Spro_1087 cytochrome o ubiquinol oxidase subunit IV; TIGRFAM: Cytochrome o ubiquinol oxidase subunit IV; PFAM: Cytochrome C oxidase subunit IV prokaryotic YP_004504413.1 KEGG: spe:Spro_1088 cytochrome o ubiquinol oxidase subunit III; TIGRFAM: Cytochrome o ubiquinol oxidase, subunit III; PFAM: Cytochrome c oxidase, subunit III YP_004504414.1 TIGRFAM: Cytochrome o ubiquinol oxidase, subunit I; KEGG: spe:Spro_1089 cytochrome o ubiquinol oxidase subunit I; PFAM: Cytochrome c oxidase, subunit I YP_004504415.1 KEGG: spe:Spro_1090 cytochrome o ubiquinol oxidase subunit II; TIGRFAM: Cytochrome o ubiquinol oxidase subunit II; PFAM: COX aromatic rich; Cytochrome c oxidase subunit II C-terminal YP_004504416.1 KEGG: spe:Spro_1091 muropeptide transporter; TIGRFAM: AmpG-related permease; PFAM: Major facilitator superfamily MFS-1 YP_004504417.1 PFAM: Uncharacterised protein family, YajG; KEGG: spe:Spro_1092 hypothetical protein YP_004504418.1 PFAM: BolA-like protein; KEGG: spe:Spro_1093 transcriptional regulator BolA YP_004504419.1 TIGRFAM: Trigger factor; HAMAP: Trigger factor; KEGG: spe:Spro_1094 trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Peptidyl-prolyl cis-trans isomerase, FKBP-type; Trigger factor, C-terminal, bacterial YP_004504420.1 PFAM: Peptidase S14, ClpP; TIGRFAM: Peptidase S14, ClpP; HAMAP: ATP-dependent Clp protease proteolytic subunit; KEGG: spe:Spro_1095 ATP-dependent Clp protease, proteolytic subunit ClpP YP_004504421.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Clp protease, ATP-binding subunit ClpX; KEGG: spe:Spro_1096 ATP-dependent protease ATP-binding subunit ClpX; HAMAP: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase associated with various cellular activities, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal YP_004504422.1 SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; TIGRFAM: Peptidase S16, ATP-dependent protease La; KEGG: spe:Spro_1097 DNA-binding ATP-dependent protease La; PFAM: Peptidase S16, lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core YP_004504423.1 KEGG: spe:Spro_1098 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_004504424.1 PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: spe:Spro_1099 peptidyl-prolyl cis-trans isomerase D YP_004504425.1 TIGRFAM: Competence protein ComEA, helix-hairpin-helix region; KEGG: spe:Spro_1100 helix-hairpin-helix repeat-containing competence protein ComEA YP_004504426.1 KEGG: spe:Spro_1101 thioesterase superfamily protein; TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily YP_004504427.1 KEGG: spe:Spro_1102 queuosine biosynthesis protein QueC; TIGRFAM: Exoenzyme S synthesis protein B/queuosine synthesis; PFAM: Queuosine synthesis-like YP_004504428.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: spe:Spro_1103 extracellular solute-binding protein YP_004504429.1 TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB; HAMAP: HMP-PP phosphatase; KEGG: spe:Spro_1104 Cof-like hydrolase; PFAM: HAD superfamily hydrolase-like, type 3 YP_004504430.1 KEGG: spe:Spro_1105 pyridoxal-5'-phosphate-dependent protein subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004504431.1 KEGG: spe:Spro_1106 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004504432.1 PFAM: ABC transporter-like; ABC transporter, transmembrane region; KEGG: spe:Spro_1107 multidrug transporter membrane\ATP-binding components; SMART: ATPase, AAA+ type, core YP_004504433.1 PFAM: ABC transporter-like; ABC transporter, transmembrane region; KEGG: spe:Spro_1108 multidrug transporter membrane\ATP-binding components; SMART: ATPase, AAA+ type, core YP_004504434.1 PFAM: Nitrogen regulatory protein PII; KEGG: pao:Pat9b_0957 nitrogen regulatory protein P-II YP_004504435.1 KEGG: spe:Spro_1110 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter YP_004504436.1 TIGRFAM: Acyl-CoA thioesterase; KEGG: spe:Spro_1111 acyl-CoA thioesterase II; PFAM: Acyl-CoA thioesterase YP_004504437.1 KEGG: spe:Spro_1112 lipoprotein YP_004504438.1 KEGG: spe:Spro_1113 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YP_004504439.1 PFAM: Integrase, catalytic core, phage; KEGG: asa:ASA_1922 phage integrase site specific recombinase YP_004504440.1 KEGG: pct:PC1_2623 hypothetical protein YP_004504443.1 PFAM: Integrase, catalytic core, phage; KEGG: shm:Shewmr7_1771 phage integrase YP_004504449.1 KEGG: asa:ASA_1924 hypothetical protein YP_004504452.1 KEGG: eoj:ECO26_0311 hypothetical protein YP_004504453.1 KEGG: eoj:ECO26_0312 hypothetical protein YP_004504455.1 KEGG: enc:ECL_04200 hypothetical protein YP_004504456.1 PFAM: DNA N-6-adenine-methyltransferase; KEGG: ecw:EcE24377A_1400 phage N-6-adenine-methyltransferase YP_004504457.1 KEGG: xau:Xaut_3656 hypothetical protein YP_004504458.1 PFAM: Haemolysin expression modulating, HHA; KEGG: rah:Rahaq_3328 hemolysin expression modulating family protein YP_004504459.1 PFAM: Biofilm formation regulator YbaJ; KEGG: spe:Spro_1119 hypothetical protein YP_004504460.1 KEGG: spe:Spro_1120 hypothetical protein YP_004504461.1 PFAM: ABC transporter-like; KEGG: spe:Spro_1121 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004504462.1 PFAM: ABC-3; KEGG: spe:Spro_1122 ABC-3 protein YP_004504463.1 PFAM: ABC transporter metal-binding lipoprotein; KEGG: spe:Spro_1123 periplasmic solute binding protein YP_004504464.1 TIGRFAM: Ribosomal protein L36; HAMAP: Ribosomal protein L36; KEGG: spe:Spro_1124 50S ribosomal protein L36; PFAM: Ribosomal protein L36 YP_004504465.1 TIGRFAM: Ribosomal protein L31; HAMAP: 50S ribosomal protein L31 type B; KEGG: spe:Spro_1125 50S ribosomal protein L31 type B; PFAM: Ribosomal protein L31 YP_004504466.1 KEGG: spe:Spro_1126 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004504467.1 KEGG: spe:Spro_1127 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004504468.1 PFAM: Transcriptional regulator, MAATS, C-terminal; Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: spe:Spro_1128 DNA-binding transcriptional repressor AcrR YP_004504469.1 PFAM: Sulphur relay, DsrE-like protein; KEGG: spe:Spro_1129 DsrE family protein YP_004504470.1 PFAM: Mechanosensitive ion channel MscS; KEGG: spe:Spro_1130 potassium efflux protein KefA YP_004504471.1 PFAM: Protein of unknown function DUF2496, YbaM-related; KEGG: spe:Spro_1131 hypothetical protein YP_004504472.1 PFAM: Primosomal replication priB/priC; KEGG: spe:Spro_1132 primosomal replication PriB and PriC YP_004504473.1 PFAM: Protein of unknown function DUF454; KEGG: spe:Spro_1133 hypothetical protein YP_004504474.1 TIGRFAM: Adenine phosphoribosyl transferase; HAMAP: Adenine phosphoribosyl transferase; KEGG: spe:Spro_1134 adenine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_004504475.1 TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: ATPase, AAA-type, core; KEGG: spe:Spro_1135 DNA polymerase III subunits gamma and tau; SMART: ATPase, AAA+ type, core YP_004504476.1 TIGRFAM: Uncharacterised protein family UPF0133; HAMAP: Uncharacterised protein family UPF0133; KEGG: cro:ROD_05291 hypothetical protein; PFAM: Uncharacterised protein family UPF0133 YP_004504477.1 SMART: Toprim domain, subgroup; TIGRFAM: RecR protein; KEGG: spe:Spro_1137 recombination protein RecR; HAMAP: Recombination protein recR; PFAM: Toprim domain; Zinc finger C4-type, RecR YP_004504478.1 HAMAP: Chaperone protein htpG; PFAM: Heat shock protein Hsp90, C-terminal; ATP-binding region, ATPase-like; KEGG: spe:Spro_1138 heat shock protein 90; SMART: ATP-binding region, ATPase-like YP_004504479.1 TIGRFAM: Adenylate kinase, subfamily; HAMAP: Adenylate kinase; KEGG: spe:Spro_1139 adenylate kinase; PFAM: Adenylate kinase; Adenylate kinase, zinc-finger lid region YP_004504480.1 PFAM: sugar diacid recognition; KEGG: spe:Spro_1140 transcriptional regulator CdaR YP_004504481.1 PFAM: Divalent ion symporter; KEGG: spe:Spro_1141 gluconate transporter YP_004504482.1 TIGRFAM: Glycerate kinase; KEGG: spe:Spro_1142 glycerate kinase; PFAM: Glycerate kinase YP_004504483.1 PFAM: Ferrochelatase; TIGRFAM: Ferrochelatase; HAMAP: Ferrochelatase; KEGG: spe:Spro_1143 ferrochelatase YP_004504484.1 KEGG: spe:Spro_1144 inosine kinase; PFAM: Carbohydrate/purine kinase YP_004504485.1 KEGG: spe:Spro_1145 cation:proton antiport protein; TIGRFAM: K+/H+ exchanger; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal YP_004504486.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_1146 major facilitator transporter YP_004504487.1 KEGG: spe:Spro_1147 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; PFAM: 5'-Nucleotidase, C-terminal; Metallophosphoesterase YP_004504488.1 KEGG: spe:Spro_1148 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00011; PFAM: YbaK/aminoacyl-tRNA synthetase associated region YP_004504489.1 PFAM: GumN; KEGG: spe:Spro_1149 GumN family protein YP_004504490.1 TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: yen:YE3061 copper exporting ATPase; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase YP_004504491.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: spe:Spro_1151 MerR family transcriptional regulator; SMART: HTH transcriptional regulator, MerR YP_004504492.1 KEGG: spe:Spro_3097 hypothetical protein YP_004504493.1 PFAM: Nodulation efficiency, NfeD; KEGG: spe:Spro_1152 hypothetical protein YP_004504494.1 KEGG: spe:Spro_1153 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein YP_004504495.1 KEGG: spe:Spro_1154 cyclopropane fatty acyl phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase YP_004504496.1 KEGG: spe:Spro_1155 thioredoxin domain-containing protein; manually curated; PFAM: Thioredoxin domain YP_004504497.1 KEGG: spe:Spro_1156 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004504498.1 KEGG: spe:Spro_1157 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; PFAM: Lipase, GDSL YP_004504499.1 PFAM: ABC transporter-like; KEGG: spe:Spro_1158 ABC transporter ATP-binding protein YbbA; SMART: ATPase, AAA+ type, core YP_004504500.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: spe:Spro_1159 hypothetical protein YP_004504501.1 KEGG: spe:Spro_1160 sugar transporter; TIGRFAM: Sugar/inositol transporter; PFAM: General substrate transporter YP_004504502.1 TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: spe:Spro_1162 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YP_004504503.1 TIGRFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: spe:Spro_1163 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_004504504.1 TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; HAMAP: UDP-2,3-diacylglucosamine hydrolase; KEGG: spe:Spro_1164 UDP-2,3-diacylglucosamine hydrolase; PFAM: Metallophosphoesterase YP_004504505.1 KEGG: spe:Spro_1165 peptidyl-prolyl cis-trans isomerase B; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_004504506.1 TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; KEGG: spe:Spro_1166 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia, N-terminal; Cysteinyl-tRNA synthetase, class Ia, DALR YP_004504507.1 KEGG: spe:Spro_1167 hypothetical protein YP_004504508.1 HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: spe:Spro_1168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_004504510.1 KEGG: spe:Spro_1169 hypothetical protein YP_004504511.1 KEGG: rsa:RSal33209_3415 esterase YP_004504512.1 PFAM: Amidohydrolase 2; KEGG: bur:Bcep18194_B2954 amidohydrolase 2 YP_004504513.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rpa:RPA2189 TetR family transcriptional regulator YP_004504515.1 PFAM: Fimbrial protein, C-terminal; KEGG: ecc:c1239 F1C major fimbrial subunit precursor YP_004504516.1 PFAM: Fimbrial protein, C-terminal; KEGG: eci:UTI89_C1110 S fimbriae minor subunit SfaD YP_004504517.1 PFAM: Pili assembly chaperone, N-terminal, bacterial; Pili assembly chaperone, C-terminal, bacterial; KEGG: ecc:c1241 F1C periplasmic chaperone YP_004504518.1 KEGG: ecp:ECP_0296 fimbrial usher protein; region: usher; pfam00577; manually curated; PFAM: Fimbrial biogenesis outer membrane usher protein YP_004504519.1 PFAM: Fimbrial protein, C-terminal; KEGG: eci:UTI89_C1113 S fimbriae minor subunit SfaG YP_004504520.1 PFAM: Fimbrial protein, C-terminal; KEGG: ecc:c1244 F1C minor fimbrial subunit protein G presursor YP_004504521.1 PFAM: FimH, mannose-binding; Fimbrial protein, C-terminal; KEGG: ecc:c1245 F1C fimbrial adhesin precursor YP_004504522.1 PFAM: PP-loop; KEGG: sty:STY4583 hypothetical protein YP_004504523.1 KEGG: eci:UTI89_C2237 hypothetical protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease YP_004504524.1 manually curated; KEGG: etw:ECSP_6077 hypothetical protein YP_004504525.1 KEGG: ecq:ECED1_5018 L-lactate permease; TIGRFAM: L-lactate permease; PFAM: L-lactate permease YP_004504526.1 PFAM: Cysteine-rich region, CCG; KEGG: ecq:ECED1_5017 conserved hypothetical protein, dehydrogenase subunit YP_004504527.1 KEGG: ecq:ECED1_5016 oxidoreductase subunit with NAD(P)-binding domain and ferridoxin-like domain; TIGRFAM: Iron-sulphur cluster binding protein; PFAM: Protein of unknown function DUF162 YP_004504528.1 PFAM: Protein of unknown function DUF162; KEGG: ecq:ECED1_5015 hypothetical protein YP_004504530.1 KEGG: bac:BamMC406_2395 hypothetical protein YP_004504531.1 PFAM: Major facilitator superfamily MFS-1; KEGG: agr:AGROH133_05970 MFS transporter YP_004504532.1 KEGG: hse:Hsero_4628 hypothetical protein YP_004504533.1 KEGG: dac:Daci_2057 fis family two component sigma-54-specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_004504534.1 KEGG: dac:Daci_2058 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004504535.1 KEGG: enc:ECL_00606 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; ThiJ/PfpI; SMART: Helix-turn-helix, AraC domain YP_004504536.1 KEGG: enc:ECL_00608 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, N-terminal YP_004504537.1 KEGG: caa:Caka_0866 hypothetical protein YP_004504538.1 KEGG: abc:ACICU_01539 hypothetical protein YP_004504539.1 KEGG: rso:RS05860 peptide synthetase; PFAM: Beta-ketoacyl synthase, N-terminal; AMP-dependent synthetase/ligase; Phosphopantetheine-binding; Beta-ketoacyl synthase, C-terminal; Acyl transferase; Aminotransferase class-III; Condensation domain YP_004504540.1 PFAM: Arylesterase; KEGG: lby:Lbys_0674 arylesterase YP_004504541.1 KEGG: lbf:LBF_2715 flavodoxin reductase; PFAM: Ferredoxin; Oxidoreductase FAD-binding region; Oxidoreductase FAD/NAD(P)-binding YP_004504542.1 PFAM: Fatty acid desaturase, type 1; KEGG: pna:Pnap_4185 oxidoreductase FAD/NAD(P)-binding subunit YP_004504543.1 KEGG: hna:Hneap_0961 alpha/beta superfamily hydrolase/acyltransferase YP_004504544.1 KEGG: rah:Rahaq_3477 phenazine biosynthesis protein PhzF family; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein YP_004504545.1 KEGG: sew:SeSA_A1756 hypothetical protein YP_004504546.1 KEGG: rah:Rahaq_2633 hypothetical protein YP_004504547.1 KEGG: spe:Spro_1178 aldo/keto reductase; PFAM: Aldo/keto reductase YP_004504548.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_1179 LysR family transcriptional regulator YP_004504549.1 PFAM: Flavodoxin/nitric oxide synthase; KEGG: spe:Spro_1180 flavodoxin/nitric oxide synthase YP_004504550.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: spe:Spro_1181 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004504552.1 PFAM: Cold-shock protein, DNA-binding; KEGG: spe:Spro_1182 cold-shock DNA-binding domain-containing protein YP_004504553.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: spe:Spro_1183 glyoxalase/bleomycin resistance protein/dioxygenase YP_004504554.1 PFAM: ABC transporter-like; KEGG: spe:Spro_1184 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004504555.1 KEGG: spe:Spro_1185 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004504556.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_1186 GCN5-related N-acetyltransferase YP_004504558.1 TIGRFAM: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase; KEGG: spe:Spro_1187 hypothetical protein YP_004504559.1 TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: spe:Spro_1188 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004504560.1 KEGG: ypb:YPTS_1144 cold shock protein CspE; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004504561.1 KEGG: spe:Spro_1190 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004504562.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: spe:Spro_1191 TetR family transcriptional regulator YP_004504564.1 TIGRFAM: Camphor resistance CrcB protein; HAMAP: CrcB-like protein; KEGG: spe:Spro_1192 CrcB protein; PFAM: Camphor resistance CrcB protein YP_004504565.1 PFAM: GCN5-related N-acetyltransferase; KEGG: esa:ESA_01926 hypothetical protein YP_004504566.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; MASE2; KEGG: spe:Spro_1193 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004504567.1 TIGRFAM: Twin-arginine translocation protein TatA/E; HAMAP: Twin-arginine translocation protein TatA/E; KEGG: spe:Spro_1194 twin arginine translocase A; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106 YP_004504568.1 KEGG: spe:Spro_1195 lipoyl synthase; PFAM: Radical SAM; TIGRFAM: Lipoate synthase; HAMAP: Lipoate synthase; SMART: Elongator protein 3/MiaB/NifB YP_004504569.1 PFAM: Biotin/lipoate A/B protein ligase; TIGRFAM: Octanoyltransferase; HAMAP: Octanoyltransferase; KEGG: spe:Spro_1196 lipoate-protein ligase B YP_004504570.1 KEGG: spe:Spro_1197 hypothetical protein; HAMAP: Protein of unknown function DUF493; PFAM: Protein of unknown function DUF493 YP_004504571.1 KEGG: spe:Spro_1198 D-alanyl-D-alanine carboxypeptidase fraction A; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YP_004504572.1 KEGG: spe:Spro_1199 rare lipoprotein A; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Rare lipoprotein A; Sporulation/cell division region, bacteria YP_004504573.1 KEGG: spe:Spro_1200 cell wall shape-determining protein; TIGRFAM: Rod shape-determining protein RodA; PFAM: Cell cycle protein YP_004504574.1 TIGRFAM: Penicillin-binding protein 2; KEGG: spe:Spro_1201 penicillin-binding protein 2; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain YP_004504575.1 TIGRFAM: Conserved hypothetical protein CHP00246; HAMAP: Ribosomal RNA large subunit methyltransferase H; KEGG: spe:Spro_1202 hypothetical protein; PFAM: SPOUT methyltransferase, predicted YP_004504576.1 KEGG: spe:Spro_1203 hypothetical protein; TIGRFAM: Iojap-related protein; PFAM: Iojap-related protein YP_004504577.1 PFAM: Cytidylyltransferase; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; HAMAP: nicotinate-nucleotide adenylyltransferase; KEGG: spe:Spro_1204 nicotinic acid mononucleotide adenylyltransferase YP_004504578.1 TIGRFAM: DNA polymerase III, delta subunit; KEGG: spe:Spro_1205 DNA polymerase III subunit delta; PFAM: DNA polymerase III, delta YP_004504579.1 KEGG: spe:Spro_1206 LPS-assembly lipoprotein RlpB; HAMAP: LPS-assembly lipoprotein lptE; PFAM: Rare lipoprotein B YP_004504580.1 TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; KEGG: spe:Spro_1207 leucyl-tRNA synthetase YP_004504581.1 PFAM: Protein of unknown function DUF1451; KEGG: spe:Spro_1208 hypothetical protein YP_004504582.1 KEGG: spe:Spro_1209 NAD(P)H dehydrogenase (quinone); HAMAP: FMN-dependent NADH-azoreductase; PFAM: Flavodoxin-like fold YP_004504583.1 KEGG: spe:Spro_1210 ribonucleoside hydrolase 1; PFAM: Inosine/uridine-preferring nucleoside hydrolase YP_004504584.1 PFAM: ABC transporter-like; KEGG: spe:Spro_1211 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004504585.1 KEGG: spe:Spro_1212 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004504586.1 KEGG: spe:Spro_1213 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004504587.1 KEGG: spe:Spro_1214 glutamate and aspartate transporter subunit; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004504588.1 TIGRFAM: Apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase; KEGG: spe:Spro_1215 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004504589.1 PFAM: Transporter-associated region; Cystathionine beta-synthase, core; KEGG: spe:Spro_1216 transporter-associated region YP_004504590.1 TIGRFAM: Uncharacterised protein family UPF0054; HAMAP: Uncharacterised protein family UPF0054; KEGG: spe:Spro_1217 hypothetical protein; PFAM: Uncharacterised protein family UPF0054 YP_004504591.1 PFAM: PhoH-like protein; KEGG: spe:Spro_1218 PhoH family protein YP_004504592.1 KEGG: spe:Spro_1219 hypothetical protein; TIGRFAM: PhnA protein; PFAM: PhnA protein, C-terminal; PhnA protein, N-terminal YP_004504593.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: tRNA-i(6)A37 modification enzyme MiaB; Methylthiotransferase; KEGG: spe:Spro_1220 tRNA-i(6)A37 thiotransferase enzyme MiaB; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM YP_004504594.1 KEGG: spe:Spro_1221 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: Monooxygenase, FAD-binding YP_004504595.1 TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: spe:Spro_1222 asparagine synthetase B; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II YP_004504596.1 KEGG: spe:Spro_1223 glycoside hydrolase; PFAM: Glycoside hydrolase, family 18, catalytic domain; Fibronectin, type III; Carbohydrate-binding domain, family 5/12; SMART: Carbohydrate-binding domain, family 5/12; Fibronectin, type III; Chitinase II YP_004504597.1 KEGG: spe:Spro_1224 UMP phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase-like hydrolase YP_004504598.1 KEGG: spe:Spro_1225 ROK family protein; PFAM: ROK; HTH transcriptional regulator, MarR YP_004504599.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: spe:Spro_1226 N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase 1 YP_004504600.1 PFAM: Glucosamine/galactosamine-6-phosphate isomerase; TIGRFAM: Glucosamine-6-phosphate isomerase, subgroup; HAMAP: Glucosamine-6-phosphate deaminase; KEGG: spe:Spro_1227 glucosamine-6-phosphate deaminase YP_004504601.1 TIGRFAM: Phosphotransferase system, N-acetylglucosamine-specific IIBC component; Phosphotransferase system, glucose-like IIB component; Phosphotransferase system, sugar-specific permease EIIA 1 domain; KEGG: rah:Rahaq_3183 PTS system, N-acetylglucosamine-specific IIBC subunit; PFAM: Phosphotransferase system, sugar-specific permease EIIA 1 domain; Phosphotransferase system, EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_004504602.1 PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; TIGRFAM: Glutaminyl-tRNA synthetase, class Ic; HAMAP: Glutaminyl-tRNA synthetase; KEGG: spe:Spro_1229 glutaminyl-tRNA synthetase YP_004504603.1 PFAM: Outer membrane porin, bacterial; KEGG: spe:Spro_1230 outer membrane porin YP_004504604.1 KEGG: spe:Spro_1231 lipoprotein YP_004504605.1 KEGG: spe:Spro_1232 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Carbohydrate-binding, chitobiase/hexosaminidase-type, N-terminal; Beta-N-acetylhexosaminidase-like; Glycoside hydrolase, family 20, C-terminal YP_004504606.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_1233 major facilitator transporter YP_004504607.1 TIGRFAM: UDP-glucose 4-epimerase; KEGG: spe:Spro_1234 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_004504608.1 PFAM: Glycosyltransferase sugar-binding region containing DXD motif; KEGG: spe:Spro_1235 hypothetical protein YP_004504609.1 PFAM: Ferric-uptake regulator; KEGG: spe:Spro_1236 ferric uptake regulator YP_004504610.1 KEGG: spe:Spro_1237 flavodoxin; TIGRFAM: Flavodoxin, long chain; PFAM: Flavodoxin/nitric oxide synthase YP_004504611.1 PFAM: CopG-like DNA-binding; KEGG: spe:Spro_1238 LexA regulated protein YP_004504612.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: spe:Spro_1239 alpha/beta hydrolase fold domain-containing protein YP_004504614.1 PFAM: Regulation modulator SeqA; KEGG: spe:Spro_1240 replication initiation regulator SeqA YP_004504615.1 KEGG: spe:Spro_1241 phosphoglucomutase; TIGRFAM: Phosphoglucomutase, alpha-D-glucose specific; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal YP_004504616.1 PFAM: Transcriptional regulator PadR N-terminal-like; KEGG: spe:Spro_1242 PadR-like family transcriptional regulator YP_004504617.1 KEGG: spe:Spro_1243 hypothetical protein YP_004504618.1 KEGG: spe:Spro_1244 DNA-binding transcriptional activator KdpE; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004504619.1 KEGG: spe:Spro_1245 sensor protein KdpD; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; UspA; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004504620.1 PFAM: Potassium transporting ATPase, C subunit; TIGRFAM: Potassium transporting ATPase, C subunit; HAMAP: Potassium transporting ATPase, C subunit; KEGG: spe:Spro_1246 potassium-transporting ATPase subunit C YP_004504621.1 PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; HAMAP: Potassium-transporting ATPase, B chain; KEGG: spe:Spro_1247 potassium-transporting ATPase subunit B YP_004504622.1 PFAM: ATPase, K+ transporting, A subunit; TIGRFAM: ATPase, K+ transporting, A subunit; HAMAP: ATPase, K+ transporting, A subunit; KEGG: spe:Spro_1248 potassium-transporting ATPase subunit A YP_004504623.1 PFAM: Protein of unknown function DUF2517; KEGG: spe:Spro_1250 hypothetical protein YP_004504624.1 PFAM: Protein of unknown function DUF1722; Protein of unknown function DUF523; KEGG: spe:Spro_1251 hypothetical protein YP_004504625.1 KEGG: spe:Spro_1252 deoxyribodipyrimidine photolyase; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal YP_004504626.1 KEGG: spe:Spro_1253 cyclic-AMP phosphodiesterase; PFAM: Cyclic-AMP phosphodiesterase, class-II YP_004504627.1 KEGG: spe:Spro_1254 hydrolase-oxidase; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NGG1p interacting factor 3, NIF3 YP_004504628.1 TIGRFAM: Conserved hypothetical protein CHP00370; PFAM: Allophanate hydrolase subunit 1; KEGG: spe:Spro_1255 allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1 YP_004504629.1 SMART: Allophanate hydrolase subunit 2; TIGRFAM: Allophanate hydrolase subunit 2; KEGG: spe:Spro_1256 UreA amidolyase related protein; PFAM: Allophanate hydrolase subunit 2 YP_004504630.1 KEGG: spe:Spro_1257 LamB/YcsF family protein; HAMAP: UPF0271 protein ybgL; PFAM: LamB/YcsF YP_004504631.1 PFAM: Peptidase C15, pyroglutamyl peptidase I; TIGRFAM: Peptidase C15, pyroglutamyl peptidase I; HAMAP: Pyrrolidone-carboxylate peptidase; KEGG: spe:Spro_1260 pyrrolidone-carboxylate peptidase YP_004504632.1 KEGG: spe:Spro_1261 endonuclease VIII; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding YP_004504633.1 KEGG: spe:Spro_1262 type II citrate synthase; TIGRFAM: Citrate synthase, type II; PFAM: Citrate synthase-like YP_004504634.1 manually curated; TIGRFAM: Succinate dehydrogenase, cytochrome b556 subunit; KEGG: spe:Spro_1263 succinate dehydrogenase cytochrome b556 large membrane subunit; PFAM: Succinate dehydrogenase, cytochrome b subunit YP_004504635.1 TIGRFAM: Succinate dehydrogenase, hydrophobic membrane anchor; KEGG: spe:Spro_1264 succinate dehydrogenase cytochrome b556 small membrane subunit YP_004504636.1 TIGRFAM: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Succinate dehydrogenase, flavoprotein subunit; KEGG: spe:Spro_1265 succinate dehydrogenase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal YP_004504637.1 KEGG: spe:Spro_1266 succinate dehydrogenase iron-sulfur subunit; TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein YP_004504638.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; KEGG: spe:Spro_1267 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component YP_004504639.1 TIGRFAM: Dihydrolipoamide succinyltransferase; KEGG: spe:Spro_1268 dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004504640.1 PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; TIGRFAM: Succinyl-CoA synthetase, beta subunit; HAMAP: Succinyl-CoA ligase [ADP-forming] subunit beta; KEGG: spe:Spro_1269 succinyl-CoA synthetase subunit beta YP_004504641.1 TIGRFAM: Succinyl-CoA ligase, alpha subunit; KEGG: spe:Spro_1270 succinyl-CoA synthetase subunit alpha; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding YP_004504642.1 KEGG: yen:YE2940 5'-nucleotidase; PFAM: 5'-Nucleotidase, C-terminal; Metallophosphoesterase YP_004504643.1 PFAM: Cytochrome bd ubiquinol oxidase, subunit I; KEGG: spe:Spro_1271 cytochrome bd ubiquinol oxidase subunit I YP_004504644.1 KEGG: spe:Spro_1272 cytochrome d ubiquinol oxidase subunit II; TIGRFAM: Cytochrome bd ubiquinol oxidase, subunit II; PFAM: Cytochrome bd ubiquinol oxidase, subunit II YP_004504645.1 KEGG: spe:Spro_1273 cyd operon protein YbgT; TIGRFAM: Cyd operon protein YbgT; PFAM: Membrane bound YbgT-like YP_004504646.1 KEGG: spe:Spro_1274 hypothetical protein; TIGRFAM: Cyd operon protein YbgE; PFAM: Cyd operon protein YbgE YP_004504647.1 KEGG: spe:Spro_1275 acyl-CoA thioester hydrolase YbgC; TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily YP_004504648.1 KEGG: spe:Spro_1276 colicin uptake protein TolQ; TIGRFAM: Tol-Pal system, TolQ; PFAM: MotA/TolQ/ExbB proton channel YP_004504649.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: spe:Spro_1277 colicin uptake protein TolR YP_004504650.1 KEGG: spe:Spro_1278 cell envelope integrity inner membrane protein TolA; TIGRFAM: Tol-Pal system, TolA; PFAM: Tol-Pal system, TolA YP_004504651.1 TIGRFAM: Tol-Pal system beta propeller repeat-containing protein, TolB; HAMAP: Tol-Pal system beta propeller repeat-containing protein, TolB; KEGG: spe:Spro_1279 translocation protein TolB; PFAM: TolB, N-terminal; WD40-like Beta Propeller YP_004504652.1 KEGG: spe:Spro_1280 peptidoglycan-associated outer membrane lipoprotein; TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal YP_004504653.1 TIGRFAM: Tol-Pal system, YbgF; KEGG: spe:Spro_1281 tol-pal system protein YbgF YP_004504654.1 PFAM: Quinolinate synthetase A; TIGRFAM: Quinolinate synthetase A; HAMAP: Quinolinate synthase A; KEGG: spe:Spro_1282 quinolinate synthetase YP_004504655.1 KEGG: spe:Spro_1283 nicotinamide mononucleotide transporter PnuC; TIGRFAM: Nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC YP_004504656.1 KEGG: spe:Spro_1284 zinc transporter ZitB; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004504657.1 KEGG: spe:Spro_1285 Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Extracellular solute-binding protein, family 3; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Extracellular solute-binding protein, family 3; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region YP_004504658.1 KEGG: spe:Spro_1286 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region YP_004504659.1 TIGRFAM: DHAP synthase, class 1; KEGG: spe:Spro_1287 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_004504660.1 PFAM: Phosphoglycerate mutase; TIGRFAM: Phosphoglycerate mutase 1; HAMAP: Phosphoglycerate mutase 1; KEGG: spe:Spro_1288 phosphoglyceromutase YP_004504661.1 PFAM: PsiF; KEGG: spe:Spro_1289 PsiF repeat-containing protein YP_004504662.1 TIGRFAM: Galactose mutarotase; KEGG: spe:Spro_1290 galactose mutarotase; PFAM: Aldose 1-epimerase YP_004504663.1 PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase, C-terminal; TIGRFAM: Galactokinase; HAMAP: Galactokinase; KEGG: spe:Spro_1291 galactokinase YP_004504664.1 TIGRFAM: Galactose-1-phosphate uridyl transferase, class I; KEGG: spe:Spro_1292 galactose-1-phosphate uridylyltransferase; PFAM: Galactose-1-phosphate uridyl transferase, N-terminal; Galactose-1-phosphate uridyl transferase, C-terminal YP_004504665.1 PFAM: Abortive infection protein; KEGG: spe:Spro_1293 abortive infection protein YP_004504666.1 PFAM: Isochorismatase-like; KEGG: spe:Spro_1294 isochorismatase hydrolase YP_004504667.1 KEGG: spe:Spro_1295 molybdenum transport ATP-binding protein ModF; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004504668.1 KEGG: spe:Spro_1296 DNA-binding transcriptional regulator ModE; TIGRFAM: Molybdenum-binding protein, N-terminal; Molybdenum-pterin binding; PFAM: Transport-associated OB, type 1; HTH transcriptional regulator, LysR YP_004504669.1 PFAM: Protein of unknown function DUF2592; KEGG: spe:Spro_1302 hypothetical protein YP_004504670.1 KEGG: spe:Spro_1303 molybdate transporter periplasmic protein; TIGRFAM: Molybdenum ABC transporter, periplasmic binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004504671.1 KEGG: spe:Spro_1304 molybdate ABC transporter permease; TIGRFAM: Molybdate ABC transporter, permease; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004504672.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Molybdate ABC transporter, ATP-binding protein; Molybdenum-pterin binding; KEGG: spe:Spro_1305 molybdate transporter ATP-binding protein; PFAM: ABC transporter-like; Transport-associated OB, type 1 YP_004504673.1 KEGG: spe:Spro_1306 phosphotransferase; TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3 YP_004504674.1 HAMAP: 6-phosphogluconolactonase; KEGG: spe:Spro_1307 6-phosphogluconolactonase; PFAM: Domain of unknown function DUF2394 YP_004504675.1 KEGG: spe:Spro_1308 kinase inhibitor protein; TIGRFAM: YbhB/YbcL; PFAM: Phosphatidylethanolamine-binding protein PEBP YP_004504676.1 PFAM: Protein of unknown function DUF1232; KEGG: spe:Spro_1309 hypothetical protein YP_004504677.1 TIGRFAM: Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; KEGG: spe:Spro_1310 adenosylmethionine--8-amino-7-oxononanoate transaminase; PFAM: Aminotransferase class-III YP_004504678.1 KEGG: spe:Spro_1311 biotin synthase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; TIGRFAM: Biotin synthase; HAMAP: Biotin synthase; SMART: Elongator protein 3/MiaB/NifB YP_004504679.1 PFAM: Aminotransferase, class I/II; TIGRFAM: 8-amino-7-oxononanoate synthase; HAMAP: 8-amino-7-oxononanoate synthase; KEGG: spe:Spro_1312 8-amino-7-oxononanoate synthase YP_004504680.1 KEGG: spe:Spro_1313 biotin biosynthesis protein BioC; TIGRFAM: Biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11 YP_004504681.1 TIGRFAM: Dethiobiotin synthase; HAMAP: Dethiobiotin synthase; KEGG: spe:Spro_1314 dithiobiotin synthetase; PFAM: Cobyrinic acid a,c-diamide synthase YP_004504682.1 PFAM: ABC transporter-like; KEGG: spe:Spro_1316 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004504683.1 SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; TIGRFAM: Excinuclease ABC, B subunit; KEGG: spe:Spro_1317 excinuclease ABC subunit B; HAMAP: Excinuclease ABC, B subunit; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein YP_004504684.1 PFAM: Protein of unknown function DUF2132; KEGG: spe:Spro_1318 hypothetical protein YP_004504685.1 KEGG: spe:Spro_1319 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0052; PFAM: LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 YP_004504686.1 TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum cofactor synthesis C-terminal; Radical SAM; KEGG: spe:Spro_1320 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB YP_004504687.1 KEGG: spe:Spro_1321 molybdenum cofactor biosynthesis protein B; TIGRFAM: Molybdenum cofactor biosynthesis protein B, proteobacteria; Molybdenum cofactor synthesis; PFAM: Molybdopterin binding YP_004504688.1 KEGG: spe:Spro_1322 molybdenum cofactor biosynthesis protein MoaC; TIGRFAM: Molybdopterin cofactor biosynthesis MoaC region; PFAM: Molybdopterin cofactor biosynthesis MoaC region YP_004504689.1 KEGG: spe:Spro_1323 molybdopterin synthase small subunit; TIGRFAM: Molybdopterin converting factor, subunit 1; PFAM: ThiamineS YP_004504690.1 PFAM: Molybdopterin biosynthesis MoaE; KEGG: spe:Spro_1324 molybdopterin guanine dinucleotide biosynthesis protein MoaE YP_004504691.1 PFAM: Uncharacterised protein family UPF0005; KEGG: spe:Spro_1325 hypothetical protein YP_004504692.1 PFAM: ABC-2 type transporter; KEGG: spe:Spro_1326 ABC-2 type transporter YP_004504693.1 PFAM: ABC-2 type transporter; KEGG: spe:Spro_1327 ABC-2 type transporter YP_004504694.1 KEGG: spe:Spro_1328 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004504695.1 PFAM: Secretion protein HlyD; KEGG: spe:Spro_1329 hypothetical protein YP_004504696.1 PFAM: Transcriptional regulator, YbiH, C-terminal; Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: spe:Spro_1330 DNA-binding transcriptional regulator YP_004504697.1 KEGG: spe:Spro_1331 ATP-dependent RNA helicase RhlE; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004504698.1 KEGG: spe:Spro_1336 NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region YP_004504699.1 PFAM: tRNA-dihydrouridine synthase; KEGG: spe:Spro_1337 tRNA-dihydrouridine synthase C YP_004504700.1 KEGG: spe:Spro_1338 N-acetyltransferase; PFAM: N-acetyltransferase YP_004504701.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_1339 LysR family transcriptional regulator YP_004504702.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: spe:Spro_1340 hypothetical protein YP_004504703.1 SMART: Metal-dependent phosphohydrolase, HD region; KEGG: dze:Dd1591_3579 metal dependent phosphohydrolase YP_004504704.1 KEGG: spe:Spro_2685 hypothetical protein YP_004504705.1 PFAM: Polysaccharide biosynthesis protein; KEGG: spe:Spro_1343 polysaccharide biosynthesis protein YP_004504706.1 KEGG: spe:Spro_1344 hypothetical protein YP_004504707.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_1345 LysR family transcriptional regulator YP_004504708.1 KEGG: spe:Spro_1346 hypothetical protein YP_004504709.1 PFAM: Amino acid permease-associated region; KEGG: spe:Spro_1347 amino acid permease-associated protein YP_004504710.1 PFAM: Transmembrane pair, bacterial; KEGG: spe:Spro_1348 transmembrane pair domain-containing protein YP_004504711.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_1349 LysR family transcriptional regulator YP_004504712.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ddd:Dda3937_01179 threonine efflux protein YP_004504713.1 PFAM: SNARE associated Golgi protein; KEGG: spe:Spro_1350 hypothetical protein YP_004504714.1 PFAM: ThiJ/PfpI; KEGG: pay:PAU_02206 transcriptional regulator, AraC family YP_004504715.1 KEGG: sur:STAUR_6012 AraC family transcriptional regulator; PFAM: ThiJ/PfpI; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004504716.1 KEGG: spe:Spro_1351 adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding YP_004504717.1 PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; KEGG: spe:Spro_1352 D-alanyl-D-alanine endopeptidase YP_004504718.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aha:AHA_2409 acetyltransferase YP_004504719.1 PFAM: 3-demethylubiquinone-9 3-O-methyltransferase; KEGG: spe:Spro_1353 3-demethylubiquinone-9 3-methyltransferase YP_004504720.1 PFAM: Protein of unknown function DUF808; KEGG: spe:Spro_1355 hypothetical protein YP_004504721.1 KEGG: spe:Spro_1356 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_004504722.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: acd:AOLE_11150 hypothetical protein YP_004504723.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: meh:M301_0831 transcriptional regulator, LysR family YP_004504724.1 SMART: HTH transcriptional regulator, MerR; KEGG: spe:Spro_1357 MerR family transcriptional regulator YP_004504725.1 KEGG: spe:Spro_1359 YaeC family lipoprotein; TIGRFAM: Lipoprotein YaeC; PFAM: NLPA lipoprotein YP_004504726.1 PFAM: Protein of unknown function DUF1460; KEGG: spe:Spro_1360 hypothetical protein YP_004504727.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_1361 GCN5-related N-acetyltransferase YP_004504728.1 PFAM: Bacterial transferase hexapeptide repeat; KEGG: spe:Spro_1362 hexapaptide repeat-containing transferase YP_004504729.1 PFAM: Protein of unknown function DUF1282; KEGG: spe:Spro_1363 hypothetical protein YP_004504730.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: axy:AXYL_03456 hypothetical protein YP_004504731.1 KEGG: enc:ECL_00740 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004504732.1 KEGG: spe:Spro_1364 D-lactate dehydrogenase; PFAM: D-lactate dehydrogenase, membrane binding, C-terminal; FAD linked oxidase, N-terminal YP_004504733.1 TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: spe:Spro_1365 methionine aminopeptidase; PFAM: Peptidase M24, structural domain YP_004504734.1 KEGG: spe:Spro_1366 hypothetical protein YP_004504735.1 PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; TIGRFAM: D-alanine--D-alanine ligase; HAMAP: D-alanine--D-alanine ligase; KEGG: spe:Spro_1367 D-alanine--D-alanine ligase YP_004504737.1 KEGG: spe:Spro_1368 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004504738.1 KEGG: spe:Spro_1369 aminotransferase; PFAM: Aminotransferase, class I/II YP_004504739.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_1370 LysR family transcriptional regulator YP_004504740.1 KEGG: spe:Spro_1371 glycoside hydrolase 3 protein; PFAM: Glycoside hydrolase, family 3, C-terminal; Glycoside hydrolase, family 3, N-terminal YP_004504741.1 KEGG: cti:RALTA_A0253 transcriptional regulator GntR family molecule-binding ubic domain; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004504742.1 KEGG: ypb:YPTS_2252 hypothetical protein YP_004504743.1 PFAM: Periplasmic binding protein; KEGG: spe:Spro_1372 periplasmic binding protein YP_004504744.1 PFAM: Bacterial transport system permease; KEGG: spe:Spro_1373 transport system permease YP_004504745.1 PFAM: ABC transporter-like; KEGG: spe:Spro_1374 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004504746.1 KEGG: spe:Spro_1375 molybdate ABC transporter periplasmic substrate-binding protein YP_004504747.1 KEGG: spe:Spro_1376 hypothetical protein YP_004504748.1 KEGG: spe:Spro_1377 cobyrinic acid a,c-diamide synthase YP_004504749.1 KEGG: spe:Spro_1378 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease; Zinc finger, C2H2-like YP_004504750.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_1379 GCN5-related N-acetyltransferase YP_004504751.1 KEGG: rah:Rahaq_3062 hypothetical protein YP_004504752.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_1380 LysR family transcriptional regulator YP_004504753.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_1381 major facilitator transporter YP_004504754.1 KEGG: spe:Spro_1382 autoinducer-2 (AI-2) kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal YP_004504755.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: spe:Spro_1383 autoinducer-2 (AI-2) modifying protein LsrG YP_004504756.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: spe:Spro_1384 lysine exporter protein LysE/YggA YP_004504757.1 KEGG: spe:Spro_1385 AraC family transcriptional regulator; PFAM: AraC protein, arabinose-binding/dimerisation; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004504758.1 KEGG: asa:ASA_1279 hypothetical protein YP_004504759.1 KEGG: spe:Spro_1386 hypothetical protein; PFAM: RIO-like kinase; SMART: RIO kinase YP_004504760.1 PFAM: Glycosyl hydrolase, family 13, catalytic region; Alpha-amylase, C-terminal all beta; KEGG: spe:Spro_1387 cytoplasmic alpha-amylase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region YP_004504761.1 PFAM: Protein of unknown function DUF799; KEGG: spe:Spro_1388 hypothetical protein YP_004504762.1 KEGG: spe:Spro_1389 lipoprotein YP_004504763.1 PFAM: Curli production assembly/transport component CsgG; KEGG: spe:Spro_1390 curli production assembly/transport component CsgG YP_004504764.1 TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: kpe:KPK_2448 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase YP_004504765.1 KEGG: yen:YE3292 transposase for insertion element IS1669; manually curated; PFAM: Integrase, catalytic core YP_004504766.1 KEGG: sea:SeAg_B4795 ISPsy11, transposase OrfA YP_004504767.1 PFAM: Protein of unknown function DUF1471; KEGG: spe:Spro_1392 hypothetical protein YP_004504768.1 PFAM: Protein of unknown function DUF1471; KEGG: spe:Spro_1393 hypothetical protein YP_004504769.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: spe:Spro_1394 TetR family transcriptional regulator YP_004504770.1 PFAM: NLPA lipoprotein; KEGG: spe:Spro_1395 NlpA lipoprotein YP_004504771.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_1396 binding-protein-dependent transport systems inner membrane component YP_004504772.1 PFAM: ABC transporter-like; NIL domain; KEGG: spe:Spro_1397 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004504773.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_1398 GCN5-related N-acetyltransferase YP_004504774.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_1399 LysR family transcriptional regulator YP_004504775.1 KEGG: spe:Spro_1400 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004504776.1 PFAM: Protein of unknown function DUF2236; KEGG: spe:Spro_1401 hypothetical protein YP_004504777.1 KEGG: spe:Spro_1402 hypothetical protein YP_004504778.1 PFAM: Isochorismatase-like; KEGG: spe:Spro_1403 isochorismatase hydrolase YP_004504779.1 KEGG: spe:Spro_1404 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004504780.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_1405 LysR family transcriptional regulator YP_004504781.1 KEGG: pct:PC1_4068 hypothetical protein YP_004504782.1 manually curated; KEGG: pct:PC1_4069 helix-turn-helix type 11 domain protein YP_004504783.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_1407 major facilitator transporter YP_004504784.1 PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; KEGG: spe:Spro_1408 GntR family transcriptional regulator YP_004504785.1 KEGG: spe:Spro_1409 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding YP_004504786.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, phosphonate import, PhnC; KEGG: spe:Spro_1410 phosphonate ABC transporter ATPase subunit; PFAM: ABC transporter-like YP_004504787.1 TIGRFAM: ABC transporter, phosphonate, periplasmic substrate-binding protein; Phosphonate-binding periplasmic protein; KEGG: spe:Spro_1411 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_004504788.1 KEGG: spe:Spro_1412 phosphonate ABC transporter inner membrane subunit; TIGRFAM: Phosphonate uptake transporter; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004504789.1 KEGG: spe:Spro_1413 phosphonate ABC transporter inner membrane subunit; TIGRFAM: Phosphonate uptake transporter; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004504790.1 PFAM: Protein of unknown function DUF1456; KEGG: spe:Spro_1414 hypothetical protein YP_004504791.1 TIGRFAM: Allophanate hydrolase; KEGG: spe:Spro_1418 allophanate hydrolase; PFAM: Amidase YP_004504792.1 SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; TIGRFAM: Urea carboxylase; Allophanate hydrolase subunit 2; KEGG: spe:Spro_1419 UreA carboxylase; PFAM: Allophanate hydrolase subunit 2; Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Allophanate hydrolase subunit 1; Biotin/lipoyl attachment YP_004504793.1 KEGG: spe:Spro_1420 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004504794.1 KEGG: spe:Spro_1421 substrate-binding periplasmic transport protein; TIGRFAM: ABC transporter, urea, substrate-binding, UrtA; PFAM: Extracellular ligand-binding receptor YP_004504795.1 KEGG: spe:Spro_1422 inner-membrane translocator; TIGRFAM: ABC transporter, urea, permease, UrtB; PFAM: Bacterial inner-membrane translocator YP_004504796.1 KEGG: spe:Spro_1423 inner-membrane translocator; TIGRFAM: ABC transporter, urea, permease, UrtC; PFAM: Bacterial inner-membrane translocator YP_004504797.1 TIGRFAM: ABC transporter, urea, ATP-binding protein, UrtD; KEGG: spe:Spro_1424 ABC transporter-like protein; PFAM: ABC transporter-like YP_004504798.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, urea, ATP-binding protein, UrtE; KEGG: spe:Spro_1425 ABC transporter-like protein; PFAM: ABC transporter-like YP_004504799.1 PFAM: Plasmid stabilisation system; KEGG: enc:ECL_A010 plasmid stabilization system YP_004504800.1 KEGG: pao:Pat9b_0067 addiction module antidote protein; TIGRFAM: addiction module antidote protein, CC2985; PFAM: addiction module antidote protein, CC2985 YP_004504801.1 PFAM: Protein of unknown function DUF2165, transmembrane; KEGG: spe:Spro_1426 hypothetical protein YP_004504802.1 KEGG: pfl:PFL_5231 phosphoesterase; TIGRFAM: Acid phosphatase, AcpA; Twin-arginine translocation pathway, signal sequence; PFAM: Phosphoesterase YP_004504803.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_1428 GCN5-related N-acetyltransferase YP_004504804.1 PFAM: Monooxygenase, FAD-binding; KEGG: spe:Spro_1429 hypothetical protein YP_004504805.1 KEGG: spe:Spro_1430 hypothetical protein YP_004504806.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_1431 LysR family transcriptional regulator YP_004504807.1 PFAM: Rhodanese-like; KEGG: spe:Spro_1432 rhodanese domain-containing protein; SMART: Rhodanese-like YP_004504808.1 PFAM: NUDIX hydrolase domain; KEGG: spe:Spro_1436 NUDIX hydrolase YP_004504809.1 PFAM: Protein of unknown function DUF523; KEGG: spe:Spro_1437 hypothetical protein YP_004504810.1 KEGG: vpe:Varpa_1823 hypothetical protein YP_004504811.1 SMART: Helix-turn-helix, AraC domain; KEGG: spe:Spro_1439 AraC family transcriptional regulator YP_004504812.1 PFAM: Aminotransferase, class I/II; HTH transcriptional regulator, GntR; KEGG: spe:Spro_1440 transcriptional regulator; SMART: HTH transcriptional regulator, GntR YP_004504813.1 PFAM: Protein of unknown function DUF1127; KEGG: spe:Spro_1441 hypothetical protein YP_004504814.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: dac:Daci_4710 glutathione S-transferase domain-containing protein YP_004504815.1 PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: spe:Spro_1442 oxidoreductase domain-containing protein YP_004504816.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rah:Rahaq_4643 antibiotic biosynthesis monooxygenase YP_004504817.1 PFAM: Isochorismatase-like; KEGG: rah:Rahaq_0165 isochorismatase hydrolase YP_004504818.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pao:Pat9b_3284 LysR family transcriptional regulator YP_004504819.1 PFAM: Peroxiredoxin, OsmC-like protein; KEGG: dda:Dd703_2114 OsmC family protein YP_004504820.1 PFAM: Fatty acid desaturase, type 1; KEGG: spe:Spro_1444 fatty acid desaturase YP_004504821.1 PFAM: ABC-type glycine betaine transport system, substrate-binding region; KEGG: spe:Spro_1445 glycine betaine ABC transporter substrate-binding protein YP_004504822.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_1446 binding-protein-dependent transport systems inner membrane component YP_004504823.1 PFAM: ABC transporter-like; Cystathionine beta-synthase, core; KEGG: spe:Spro_1447 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004504824.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_1448 binding-protein-dependent transport systems inner membrane component YP_004504825.1 manually curated; KEGG: spe:Spro_1449 hypothetical protein YP_004504826.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: yen:YE2860 short chain dehydrogenase YP_004504827.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: yen:YE2859 LysR family transcriptional regulator YP_004504828.1 KEGG: spe:Spro_1450 hypothetical protein YP_004504829.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: spe:Spro_1451 hypothetical protein YP_004504830.1 KEGG: rah:Rahaq_3041 hypothetical protein YP_004504831.1 KEGG: spe:Spro_1452 transcriptional regulator YP_004504832.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_1453 major facilitator transporter YP_004504833.1 KEGG: ddd:Dda3937_02117 L-rhamnose operon transcriptional activator RhaR; PFAM: AraC protein, arabinose-binding/dimerisation; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004504834.1 PFAM: AzlC-like; KEGG: vvm:VVM_02146 AzlC family protein YP_004504835.1 PFAM: Branched-chain amino acid transport; KEGG: dze:Dd1591_1355 branched-chain amino acid transport YP_004504836.1 KEGG: spe:Spro_1454 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3 YP_004504837.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_1455 GCN5-related N-acetyltransferase YP_004504838.1 KEGG: spe:Spro_1456 5'-nucleotidase; TIGRFAM: 5-nucleotidase lipoprotein e(P4); PFAM: Acid phosphatase (Class B) YP_004504839.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_1457 GCN5-related N-acetyltransferase YP_004504840.1 PFAM: Porin, Gram-negative type; KEGG: spe:Spro_1458 porin YP_004504841.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: spe:Spro_1459 carboxymuconolactone decarboxylase YP_004504842.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: spe:Spro_1460 tautomerase YP_004504843.1 SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal; Helicase-like, DEXD box c2 type; KEGG: spe:Spro_1461 ATP-dependent DNA helicase DinG YP_004504844.1 KEGG: spe:Spro_1462 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004504845.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: spe:Spro_1463 hypothetical protein YP_004504846.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pfl:PFL_1390 drug transporter YP_004504847.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: mxa:MXAN_6792 LysR family transcriptional regulator YP_004504848.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bam:Bamb_5140 lysine exporter protein LysE/YggA YP_004504849.1 SMART: Helix-turn-helix type 3; KEGG: spe:Spro_1464 helix-turn-helix domain-containing protein YP_004504850.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_1465 major facilitator transporter YP_004504851.1 PFAM: Negative transcriptional regulator; KEGG: spe:Spro_1466 FMN-binding negative transcriptional regulator YP_004504852.1 PFAM: Glycosyl transferase, family 3, N-terminal; KEGG: spe:Spro_1467 glycosyl transferase YP_004504853.1 PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; KEGG: spe:Spro_1468 peptidase M3A and M3B thimet/oligopeptidase F YP_004504854.1 PFAM: Protein of unknown function DUF1471; KEGG: yen:YE2851 hypothetical protein YP_004504855.1 PFAM: Flavin reductase-like, FMN-binding; KEGG: spe:Spro_1469 flavoprotein oxygenase YP_004504856.1 HAMAP: Ribosomal RNA large subunit methyltransferase F; KEGG: spe:Spro_1470 SAM-dependent methyltransferase; PFAM: S-adenosyl-L-methionine dependent methyltransferase, predicted YP_004504857.1 KEGG: spe:Spro_1471 hypothetical protein YP_004504858.1 PFAM: ABC transporter-like; KEGG: spe:Spro_1477 glutamine ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004504859.1 KEGG: spe:Spro_1478 glutamine ABC transporter permease; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004504860.1 TIGRFAM: Lysine-arginine-ornithine-binding periplasmic protein; PFAM: Extracellular solute-binding protein, family 3; KEGG: spe:Spro_1479 glutamine ABC transporter periplasmic protein; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor YP_004504862.1 KEGG: spe:Spro_1480 hypothetical protein YP_004504863.1 KEGG: spe:Spro_1481 DNA starvation/stationary phase protection protein Dps; HAMAP: DNA protection during starvation protein; PFAM: Ferritin/Dps protein YP_004504864.1 KEGG: rah:Rahaq_4639 shikimate kinase YP_004504865.1 KEGG: spe:Spro_1482 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00022; PFAM: Conserved hypothetical protein CHP00022 YP_004504866.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: spe:Spro_1483 threonine and homoserine efflux system YP_004504867.1 KEGG: spe:Spro_1484 outer membrane protein X; TIGRFAM: Outer membrane insertion C-terminal signal, omp85; PFAM: Virulence-related outer membrane protein YP_004504868.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: spe:Spro_1485 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004504869.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_1486 LysR family transcriptional regulator YP_004504870.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_1487 GCN5-related N-acetyltransferase YP_004504871.1 KEGG: spe:Spro_1489 hydroxypyruvate isomerase; PFAM: Xylose isomerase, TIM barrel domain YP_004504872.1 PFAM: Oxidoreductase, molybdopterin binding; KEGG: spe:Spro_1495 oxidoreductase molybdopterin binding YP_004504873.1 KEGG: spe:Spro_1496 HupC/HyaC/HydC family protein YP_004504874.1 KEGG: spe:Spro_1497 hypothetical protein YP_004504875.1 KEGG: spe:Spro_1507 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004504876.1 KEGG: spe:Spro_1508 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004504877.1 KEGG: spe:Spro_1509 thiosulfate reductase cytochrome subunit B (membrane anchoring protein) YP_004504878.1 PFAM: Oxidoreductase, molybdopterin binding; KEGG: spe:Spro_1510 oxidoreductase molybdopterin binding YP_004504879.1 TIGRFAM: Pentapeptide MXKDX repeat protein; KEGG: spe:Spro_1511 pentapeptide MXKDX repeat-containing protein YP_004504880.1 KEGG: spe:Spro_1512 choline transport protein BetT; TIGRFAM: BCCT transporter; PFAM: BCCT transporter YP_004504881.1 TIGRFAM: Transcriptional repressor BetI; HAMAP: HTH-type transcriptional regulator betI; KEGG: spe:Spro_1513 transcriptional regulator BetI; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal YP_004504882.1 PFAM: Aldehyde dehydrogenase; TIGRFAM: Betaine aldehyde dehydrogenase; HAMAP: Betaine aldehyde dehydrogenase; KEGG: spe:Spro_1514 betaine aldehyde dehydrogenase YP_004504883.1 PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; TIGRFAM: Choline dehydrogenase; HAMAP: Choline dehydrogenase; KEGG: spe:Spro_1515 choline dehydrogenase YP_004504884.1 KEGG: spe:Spro_1516 ferredoxin-dependent glutamate synthase; PFAM: Glutamate synthase, central-C YP_004504885.1 SMART: Transcription regulator LuxR, C-terminal; KEGG: spe:Spro_1517 LuxR family transcriptional regulator YP_004504886.1 KEGG: spe:Spro_1518 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, predicted; SMART: Diguanylate phosphodiesterase, predicted YP_004504887.1 PFAM: Fimbrial protein, C-terminal; KEGG: smt:Smal_0561 fimbrial protein YP_004504888.1 PFAM: Pili assembly chaperone, N-terminal, bacterial; Pili assembly chaperone, C-terminal, bacterial; KEGG: smt:Smal_0562 pili assembly chaperone, N-terminal YP_004504889.1 PFAM: Fimbrial biogenesis outer membrane usher protein; KEGG: sml:Smlt0708 outer membrane usher protein mrkc precursor YP_004504890.1 PFAM: Fimbrial protein, C-terminal; KEGG: xfa:XF0077 fimbrial adhesin precursor YP_004504891.1 KEGG: spe:Spro_1523 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004504892.1 PFAM: Malate:quinone-oxidoreductase; TIGRFAM: Malate:quinone-oxidoreductase; KEGG: spe:Spro_1524 malate:quinone oxidoreductase; HAMAP: Malate:quinone-oxidoreductase YP_004504893.1 KEGG: spe:Spro_1525 NmrA family protein YP_004504894.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: spe:Spro_1526 TetR family transcriptional regulator YP_004504895.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_1527 GCN5-related N-acetyltransferase YP_004504896.1 PFAM: Alkaline phosphatase; KEGG: spe:Spro_1528 alkaline phosphatase; SMART: Alkaline phosphatase YP_004504897.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: spe:Spro_1529 glutathione S-transferase domain-containing protein YP_004504898.1 KEGG: xbo:XBJ1_2784 transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004504899.1 KEGG: cti:RALTA_B2169 cytochrome p450 family protein YP_004504900.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: spe:Spro_1530 antibiotic biosynthesis monooxygenase YP_004504901.1 PFAM: Isochorismatase-like; KEGG: geo:Geob_1291 isochorismatase hydrolase YP_004504902.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pfl:PFL_4036 LysR family transcriptional regulator YP_004504903.1 KEGG: spe:Spro_1531 hypothetical protein YP_004504904.1 KEGG: pen:PSEEN4672 hypothetical protein YP_004504905.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pao:Pat9b_5809 major facilitator superfamily MFS_1 YP_004504906.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: gvi:gll2860 LysR family transcriptional regulator YP_004504907.1 KEGG: spe:Spro_1536 hypothetical protein YP_004504908.1 KEGG: spe:Spro_1545 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004504911.1 KEGG: spe:Spro_1546 molybdopterin biosynthesis protein MoeB; TIGRFAM: Molybdopterin synthase sulfurylase MoeB; PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB YP_004504912.1 KEGG: spe:Spro_1547 molybdopterin biosynthesis protein MoeA; TIGRFAM: Molybdenum cofactor synthesis; PFAM: MoeA, N-terminal region, domain I/II; Molybdopterin binding; MoeA, C-terminal, domain IV YP_004504913.1 PFAM: Protein of unknown function DUF924, bacterial; KEGG: spe:Spro_1548 hypothetical protein YP_004504914.1 KEGG: spe:Spro_1549 peptidase T2 asparaginase 2; PFAM: Peptidase T2, asparaginase 2 YP_004504915.1 KEGG: spe:Spro_1550 ABC transporter-like protein; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; SMART: ATPase, AAA+ type, core YP_004504916.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: spe:Spro_1551 extracellular solute-binding protein YP_004504917.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_1552 binding-protein-dependent transport systems inner membrane component YP_004504918.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_1553 binding-protein-dependent transport systems inner membrane component YP_004504919.1 PFAM: Post-segregation antitoxin CcdA; KEGG: spe:Spro_1554 post-segregation antitoxin CcdA YP_004504920.1 PFAM: CcdB protein; KEGG: spe:Spro_1555 CcdB protein YP_004504921.1 TIGRFAM: S-formylglutathione hydrolase; KEGG: spe:Spro_1556 S-formylglutathione hydrolase; PFAM: esterase YP_004504922.1 KEGG: spe:Spro_1557 S-(hydroxymethyl)glutathione dehydrogenase; TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding YP_004504923.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_1558 LysR family transcriptional regulator YP_004504924.1 PFAM: Protein of unknown function DUF1228; KEGG: spe:Spro_1559 hypothetical protein YP_004504925.1 PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM: GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; KEGG: spe:Spro_1560 GTP cyclohydrolase I YP_004504926.1 PFAM: Protein of unknown function DUF418; Protein of unknown function DUF405; KEGG: spe:Spro_1561 hypothetical protein YP_004504927.1 KEGG: spe:Spro_1562 DNA-binding transcriptional regulator GalS; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004504928.1 PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: spe:Spro_1563 periplasmic binding protein/LacI transcriptional regulator YP_004504929.1 PFAM: ABC transporter-like; KEGG: spe:Spro_1564 galactose/methyl galaxtoside transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004504930.1 PFAM: Bacterial inner-membrane translocator; KEGG: spe:Spro_1565 beta-methylgalactoside transporter inner membrane component YP_004504931.1 PFAM: Protein of unknown function DUF218; KEGG: spe:Spro_1566 hypothetical protein YP_004504932.1 HAMAP: NAD-dependent malic enzyme; KEGG: spe:Spro_1567 malate dehydrogenase; PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal YP_004504933.1 PFAM: Cytidine/deoxycytidylate deaminase, zinc-binding region; CMP/dCMP deaminase, zinc-binding; TIGRFAM: Cytidine deaminase, homodimeric; HAMAP: Cytidine deaminase, bacteria; KEGG: spe:Spro_1568 cytidine deaminase YP_004504934.1 KEGG: spe:Spro_1569 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00659; PFAM: LrgB-like protein YP_004504935.1 KEGG: spe:Spro_1570 hypothetical protein; HAMAP: UPF0299 membrane protein yohJ; PFAM: LrgA YP_004504936.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_1571 major facilitator transporter YP_004504937.1 KEGG: yen:YE2787 sugar ABC transporter YP_004504938.1 PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding region; TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; HAMAP: Methionyl-tRNA synthetase; KEGG: spe:Spro_1573 methionyl-tRNA synthetase YP_004504939.1 PFAM: ATPase-like, ParA/MinD; KEGG: spe:Spro_1574 ATPase YP_004504940.1 KEGG: spe:Spro_1575 PA-phosphatase-like phosphoesterase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase YP_004504941.1 PFAM: Phosphoribulokinase/uridine kinase; TIGRFAM: Uridine kinase; HAMAP: Uridine kinase; KEGG: spe:Spro_1576 uridine kinase YP_004504942.1 TIGRFAM: Deoxycytidine triphosphate deaminase; HAMAP: Deoxycytidine triphosphate deaminase; KEGG: spe:Spro_1577 deoxycytidine triphosphate deaminase; PFAM: DeoxyUTP pyrophosphatase domain YP_004504943.1 PFAM: AsmA; KEGG: spe:Spro_1578 assembly protein YP_004504944.1 KEGG: gvi:gll4242 hypothetical protein YP_004504945.1 KEGG: spe:Spro_1579 C4-dicarboxylate transporter DcuC; TIGRFAM: C4-dicarboxylate anaerobic carrier; PFAM: C4-dicarboxylate anaerobic carrier-like YP_004504946.1 PFAM: Integral membrane protein TerC; Cystathionine beta-synthase, core; Transporter-associated region; KEGG: spe:Spro_1580 integral membrane protein TerC YP_004504947.1 TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: spe:Spro_1581 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase YP_004504948.1 TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: spe:Spro_1582 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase YP_004504949.1 manually curated; KEGG: pdi:BDI_1846 transmembrane protein YP_004504950.1 KEGG: abn:AB57_0097 hypothetical protein YP_004504951.1 PFAM: Glycosyl transferase, group 1; KEGG: eca:ECA1434 glycosyl transferase YP_004504952.1 PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: spe:Spro_1583 polysaccharide export protein YP_004504953.1 manually curated; PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: pct:PC1_1297 protein tyrosine phosphatase; SMART: Protein-tyrosine phosphatase, low molecular weight YP_004504954.1 TIGRFAM: Exopolysaccharide synthesis protein; KEGG: pwa:Pecwa_3034 tyrosine kinase; PFAM: Lipopolysaccharide biosynthesis YP_004504955.1 PFAM: Glycosyl transferase, group 1; KEGG: nsa:Nitsa_1418 glycosyl transferase group 1 YP_004504956.1 PFAM: Glycosyl transferase, group 1; KEGG: rah:Rahaq_3590 glycosyl transferase group 1 YP_004504957.1 TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: pwa:Pecwa_3033 undecaprenyl-phosphate galactose phosphotransferase, WbaP; PFAM: Bacterial sugar transferase YP_004504958.1 KEGG: bxe:Bxe_A3849 hypothetical protein YP_004504959.1 KEGG: spe:Spro_1595 hypothetical protein YP_004504960.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, type I secretion system, PrtD; KEGG: spe:Spro_1596 type I secretion system ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane region YP_004504961.1 KEGG: spe:Spro_1597 HlyD family type I secretion membrane fusion protein; TIGRFAM: Type I secretion membrane fusion protein, HlyD; PFAM: Secretion protein HlyD YP_004504962.1 KEGG: spe:Spro_1598 TolC family type I secretion outer membrane protein; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein YP_004504963.1 TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: spe:Spro_1599 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Nucleotidyl transferase; Mannose-6-phosphate isomerase, type II, C-terminal YP_004504964.1 KEGG: spe:Spro_1600 phosphomannomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal YP_004504965.1 TIGRFAM: UDP-glucose 4-epimerase; KEGG: spe:Spro_1601 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_004504966.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: ddc:Dd586_1245 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related YP_004504967.1 PFAM: dTDP-4-dehydrorhamnose reductase; manually curated; KEGG: dze:Dd1591_2856 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase YP_004504968.1 PFAM: Glycosyl transferase, family 2; KEGG: kpn:KPN_02487 glycosyltransferase YP_004504969.1 PFAM: ABC-2 type transporter; KEGG: kpn:KPN_02486 O-antigen export - TMD component YP_004504970.1 PFAM: ABC transporter-like; KEGG: kpn:KPN_02485 O-antigen export - NBD component; SMART: ATPase, AAA+ type, core YP_004504971.1 PFAM: Capsule polysaccharide biosynthesis; Glycosyl transferase, family 2; KEGG: kpn:KPN_02484 glycosyltransferase YP_004504972.1 PFAM: Acyltransferase 3; KEGG: pfo:Pfl01_5194 acyltransferase 3 YP_004504973.1 TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; KEGG: spe:Spro_1608 6-phosphogluconate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, C-terminal; 6-phosphogluconate dehydrogenase, NAD-binding YP_004504974.1 TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; HAMAP: Histidine biosynthesis bifunctional protein hisIE; KEGG: spe:Spro_1609 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; Phosphoribosyl-AMP cyclohydrolase YP_004504975.1 TIGRFAM: Histidine biosynthesis, HisF; HAMAP: Imidazole glycerol phosphate synthase subunit hisF; KEGG: spe:Spro_1610 imidazole glycerol phosphate synthase subunit HisF; PFAM: Histidine biosynthesis YP_004504976.1 PFAM: Histidine biosynthesis; TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; HAMAP: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; KEGG: spe:Spro_1611 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_004504977.1 TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; HAMAP: Imidazole glycerol phosphate synthase, subunit H; KEGG: spe:Spro_1612 imidazole glycerol phosphate synthase subunit HisH; PFAM: Glutamine amidotransferase class-I, C-terminal YP_004504978.1 PFAM: Imidazoleglycerol-phosphate dehydratase; Polynucleotide kinase 3 phosphatase, central region; TIGRFAM: Histidinol-phosphatase; Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; HAMAP: Imidazoleglycerol-phosphate dehydratase; Histidine biosynthesis bifunctional protein hisB; KEGG: spe:Spro_1613 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_004504979.1 PFAM: Aminotransferase, class I/II; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: spe:Spro_1614 histidinol-phosphate aminotransferase YP_004504980.1 PFAM: Histidinol dehydrogenase, prokaryotic-type; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; HAMAP: Histidinol dehydrogenase, prokaryotic-type; KEGG: spe:Spro_1615 histidinol dehydrogenase YP_004504981.1 PFAM: ATP phosphoribosyltransferase, catalytic region; Histidine biosynthesis HisG, C-terminal; TIGRFAM: ATP phosphoribosyltransferase, catalytic region; Histidine biosynthesis HisG, C-terminal; HAMAP: Histidine biosynthesis HisG, ATP phosphoribosyltransferase, subgroup; KEGG: spe:Spro_1616 ATP phosphoribosyltransferase YP_004504982.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: spe:Spro_1617 NAD-dependent epimerase/dehydratase YP_004504983.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_1618 LysR family transcriptional regulator YP_004504984.1 TIGRFAM: agmatinase; KEGG: spe:Spro_1619 agmatinase; PFAM: Ureohydrolase YP_004504985.1 PFAM: Sodium/solute symporter; KEGG: spe:Spro_1620 Na+/solute symporter YP_004504986.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: spe:Spro_1621 Mg2 transporter protein CorA family protein YP_004504987.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_1622 GCN5-related N-acetyltransferase YP_004504988.1 KEGG: eca:ECA2691 hypothetical protein YP_004504989.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: spe:Spro_1623 glutathione S-transferase domain-containing protein YP_004504990.1 KEGG: spe:Spro_1624 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial; HAD-superfamily hydrolase, subfamily IB, PSPase-like; PFAM: Haloacid dehalogenase-like hydrolase YP_004504992.1 PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: spe:Spro_1625 2OG-Fe(II) oxygenase YP_004504993.1 PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; KEGG: spe:Spro_1626 cystathionine gamma-synthase YP_004504994.1 PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Cystathionine beta-synthase, core; KEGG: spe:Spro_1627 pyridoxal-5'-phosphate-dependent protein subunit beta; SMART: Cystathionine beta-synthase, core YP_004504995.1 KEGG: spe:Spro_1628 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YP_004504996.1 TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; KEGG: spe:Spro_1629 L-serine dehydratase 1; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain YP_004504997.1 TIGRFAM: Serine transporter; KEGG: spe:Spro_1630 serine transporter YP_004504998.1 KEGG: spe:Spro_1631 DNA-binding transcriptional repressor DeoR; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004504999.1 PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: Deoxyribose-phosphate aldolase; HAMAP: Deoxyribose-phosphate aldolase; KEGG: spe:Spro_1632 deoxyribose-phosphate aldolase YP_004505000.1 KEGG: spe:Spro_1633 hypothetical protein YP_004505001.1 PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; KEGG: spe:Spro_1634 undecaprenyl pyrophosphate phosphatase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase YP_004505002.1 KEGG: spe:Spro_1635 hypothetical protein YP_004505003.1 KEGG: spe:Spro_1636 purine phosphorylase 1; TIGRFAM: MTA/SAH nucleosidase; PFAM: Nucleoside phosphorylase YP_004505004.1 KEGG: spe:Spro_1637 ecotin; HAMAP: Ecotin; PFAM: Proteinase inhibitor I11, ecotin YP_004505005.1 PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; KEGG: spe:Spro_1638 pyridoxal-5'-phosphate-dependent protein subunit beta YP_004505006.1 KEGG: bpr:GBP346_A2242 hypothetical protein YP_004505007.1 KEGG: bur:Bcep18194_A5039 XRE family transcriptional regulator YP_004505008.1 PFAM: Calcium-mediated lectin; KEGG: plu:plu4230 hypothetical protein YP_004505009.1 TIGRFAM: YidE/YbjL duplication; HAMAP: transport protein ybjL; KEGG: spe:Spro_1639 hypothetical protein; PFAM: YidE/YbjL duplication; Regulator of K+ conductance, C-terminal YP_004505010.1 KEGG: spe:Spro_1640 hypothetical protein YP_004505011.1 KEGG: spe:Spro_1641 glutaredoxin 1; TIGRFAM: Glutaredoxin, GrxA; PFAM: Glutaredoxin YP_004505012.1 PFAM: Protein of unknown function DUF1418; KEGG: spe:Spro_1642 hypothetical protein YP_004505013.1 TIGRFAM: S6 modification enzyme RimK; HAMAP: Ribosomal protein S6 modification protein; KEGG: spe:Spro_1643 alpha-L-glutamate ligase; PFAM: ATP-grasp fold, RimK-type YP_004505014.1 PFAM: Sensory transduction regulator, , bacterial; KEGG: spe:Spro_1644 hypothetical protein YP_004505015.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: spe:Spro_1645 putrescine ABC transporter periplasmic-binding protein YP_004505016.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Spermidine/putrescine ABC transporter ATP-binding subunit; KEGG: spe:Spro_1646 putrescine transporter ATP-binding subunit; PFAM: ABC transporter-like; Transport-associated OB, type 2 YP_004505017.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_1647 putrescine ABC transporter membrane protein YP_004505018.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_1648 putrescine ABC transporter membrane protein YP_004505019.1 KEGG: spe:Spro_1649 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2593 YP_004505020.1 TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumB; HAMAP: 23S rRNA (uracil-5-)-methyltransferase rumB; KEGG: spe:Spro_1650 23S rRNA methyluridine methyltransferase; PFAM: (Uracil-5)-methyltransferase YP_004505021.1 TIGRFAM: Lysine-arginine-ornithine-binding periplasmic protein; PFAM: Extracellular solute-binding protein, family 3; KEGG: spe:Spro_1652 cationic amino acid ABC transporter periplasmic binding protein; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor YP_004505022.1 KEGG: spe:Spro_1653 arginine transporter permease subunit ArtM; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004505023.1 KEGG: spe:Spro_1654 arginine transporter permease subunit ArtQ; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004505024.1 TIGRFAM: Lysine-arginine-ornithine-binding periplasmic protein; PFAM: Extracellular solute-binding protein, family 3; KEGG: spe:Spro_1655 cationic amino acid ABC transporter periplasmic binding protein; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor YP_004505025.1 PFAM: ABC transporter-like; KEGG: spe:Spro_1656 arginine transporter ATP-binding subunit; SMART: ATPase, AAA+ type, core YP_004505026.1 KEGG: spe:Spro_1657 lipoprotein YP_004505027.1 manually curated; PFAM: Transcription regulator, AsnC-type, C-terminal; KEGG: psb:Psyr_1172 regulatory proteins, AsnC/Lrp; SMART: Transcription regulator, AsnC-type YP_004505028.1 PFAM: Protein of unknown function DUF2000; KEGG: ddd:Dda3937_01319 hypothetical protein YP_004505029.1 KEGG: spe:Spro_1658 hypothetical protein; HAMAP: UPF0145 protein ybjQ; PFAM: Uncharacterised protein family UPF0145 YP_004505030.1 KEGG: bcm:Bcenmc03_3637 hypothetical protein YP_004505031.1 KEGG: spe:Spro_1659 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2 YP_004505032.1 KEGG: spe:Spro_1660 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004505033.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: spe:Spro_1661 NAD-dependent epimerase/dehydratase YP_004505034.1 PFAM: Protein of unknown function DUF1294; KEGG: spe:Spro_1662 hypothetical protein YP_004505035.1 KEGG: spe:Spro_1663 L-threonine aldolase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase YP_004505036.1 KEGG: spe:Spro_1664 pyruvate dehydrogenase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004505037.1 PFAM: Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; KEGG: spe:Spro_1665 HCP oxidoreductase YP_004505038.1 TIGRFAM: Hybrid cluster protein; HAMAP: Hybrid cluster protein; KEGG: spe:Spro_1666 hydroxylamine reductase; PFAM: Prismane YP_004505039.1 PFAM: Protein of unknown function DUF340, prokaryotic membrane; KEGG: spe:Spro_1667 hypothetical protein YP_004505040.1 KEGG: spe:Spro_1668 hypothetical protein YP_004505041.1 PFAM: Protein of unknown function DUF535; KEGG: spe:Spro_1669 hypothetical protein YP_004505042.1 KEGG: spe:Spro_1670 macrolide transporter subunit MacA; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004505043.1 PFAM: ABC transporter-like; Protein of unknown function DUF214, permase predicted; KEGG: spe:Spro_1671 macrolide transporter ATP-binding/permease; SMART: ATPase, AAA+ type, core YP_004505044.1 TIGRFAM: CspD, cold shock; PFAM: Cold-shock protein, DNA-binding; KEGG: spe:Spro_1672 cold-shock DNA-binding domain-containing protein; SMART: Cold shock protein YP_004505045.1 PFAM: Adaptor protein ClpS, core; KEGG: spe:Spro_1673 ATP-dependent Clp protease adaptor protein ClpS YP_004505046.1 TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: spe:Spro_1674 ATP-dependent Clp protease ATP-binding subunit; SMART: ATPase, AAA+ type, core YP_004505047.1 TIGRFAM: Translation initiation factor IF-1; HAMAP: Translation initiation factor IF-1; KEGG: rah:Rahaq_1444 translation initiation factor IF-1; PFAM: S1, IF1 type YP_004505048.1 PFAM: Leucyl/phenylalanyl-tRNA-protein transferase; TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase; HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase; KEGG: spe:Spro_1676 leucyl/phenylalanyl-tRNA--protein transferase YP_004505049.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; KEGG: spe:Spro_1677 cysteine/glutathione ABC transporter membrane/ATP-binding component; PFAM: ABC transporter-like YP_004505050.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; KEGG: spe:Spro_1678 cysteine/glutathione ABC transporter membrane/ATP-binding component; PFAM: ABC transporter-like; ABC transporter, transmembrane region YP_004505051.1 PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: spe:Spro_1679 glutathione S-transferase domain-containing protein YP_004505052.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_1680 LysR family transcriptional regulator YP_004505053.1 TIGRFAM: Thioredoxin reductase; KEGG: spe:Spro_1681 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004505054.1 KEGG: spe:Spro_1682 leucine-responsive transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004505055.1 PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: spe:Spro_1683 cell division protein FtsK/SpoIIIE YP_004505056.1 TIGRFAM: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; HAMAP: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; KEGG: spe:Spro_1684 outer-membrane lipoprotein carrier protein; PFAM: Outer membrane lipoprotein carrier protein LolA YP_004505057.1 KEGG: spe:Spro_1685 recombination factor protein RarA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_004505058.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Seryl-tRNA synthetase, class IIa, N-terminal; TIGRFAM: Seryl-tRNA synthetase, class IIa; HAMAP: Seryl-tRNA synthetase; KEGG: spe:Spro_1686 seryl-tRNA synthetase YP_004505059.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dda:Dd703_0041 lysine exporter (LysE/YggA) YP_004505060.1 KEGG: dda:Dd703_0040 AraC family transcriptional regulator; PFAM: AraC protein, arabinose-binding/dimerisation; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004505061.1 PFAM: Protein of unknown function DUF1801; KEGG: sbn:Sbal195_1946 hypothetical protein YP_004505062.1 KEGG: spe:Spro_1700 MFS family transporter protein; manually curated; PFAM: Major facilitator superfamily MFS-1 YP_004505063.1 TIGRFAM: Pyruvate formate-lyase activating; KEGG: spe:Spro_1701 pyruvate formate lyase-activating enzyme 1; PFAM: Radical SAM YP_004505064.1 TIGRFAM: Formate acetyltransferase; KEGG: spe:Spro_1702 formate acetyltransferase; PFAM: Pyruvate formate-lyase, PFL; Formate C-acetyltransferase glycine radical YP_004505065.1 KEGG: spe:Spro_1703 formate transporter; TIGRFAM: Formate/nitrite transporter; PFAM: Formate/nitrite transporter YP_004505066.1 KEGG: spe:Spro_1704 hypothetical protein; TIGRFAM: YcaO-like; PFAM: YcaO-like YP_004505067.1 TIGRFAM: L-asparaginase, type II; KEGG: spe:Spro_1705 L-asparaginase II; PFAM: Asparaginase/glutaminase YP_004505068.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; TIGRFAM: Phosphoserine aminotransferase; HAMAP: Phosphoserine aminotransferase; KEGG: spe:Spro_1706 phosphoserine aminotransferase YP_004505069.1 PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; KEGG: spe:Spro_1707 3-phosphoshikimate 1-carboxyvinyltransferase YP_004505070.1 PFAM: Cytidylate kinase region; TIGRFAM: Cytidylate kinase; HAMAP: Cytidylate kinase; KEGG: spe:Spro_1708 cytidylate kinase YP_004505071.1 KEGG: spe:Spro_1709 30S ribosomal protein S1; TIGRFAM: Ribosomal S1 synthesis/modification protein; PFAM: Ribosomal protein S1, RNA binding domain YP_004505072.1 TIGRFAM: Integration host factor, beta subunit; PFAM: Histone-like bacterial DNA-binding protein; KEGG: spe:Spro_1710 integration host factor subunit beta; SMART: Histone-like bacterial DNA-binding protein YP_004505073.1 manually curated; TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; KEGG: spe:Spro_1711 hypothetical protein; PFAM: ComEC/Rec2-related protein YP_004505074.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, lipid A export, MsbA; KEGG: spe:Spro_1712 lipid transporter ATP-binding/permease; PFAM: ABC transporter-like; ABC transporter, transmembrane region YP_004505075.1 PFAM: Tetraacyldisaccharide 4'-kinase; TIGRFAM: Tetraacyldisaccharide 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; KEGG: spe:Spro_1713 tetraacyldisaccharide 4'-kinase YP_004505076.1 PFAM: Protein of unknown function DUF1338; KEGG: spe:Spro_1714 hypothetical protein YP_004505077.1 KEGG: spe:Spro_1715 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004505078.1 KEGG: spe:Spro_1716 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004505079.1 PFAM: Protein of unknown function DUF1006; KEGG: spe:Spro_1717 hypothetical protein YP_004505080.1 KEGG: spe:Spro_1718 hypothetical protein; HAMAP: UPF0434 protein ycaR; PFAM: Protein of unknown function DUF343 YP_004505081.1 PFAM: Acylneuraminate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: spe:Spro_1719 3-deoxy-manno-octulosonate cytidylyltransferase YP_004505082.1 KEGG: spe:Spro_1720 hypothetical protein YP_004505083.1 PFAM: Protein of unknown function DUF218; KEGG: spe:Spro_1721 hypothetical protein YP_004505084.1 PFAM: Methyltransferase type 11; KEGG: spe:Spro_1722 metallothionein SmtA YP_004505085.1 KEGG: spe:Spro_1723 condesin subunit F; HAMAP: Chromosome partition protein MukF; PFAM: Chromosome partition protein MukF YP_004505086.1 KEGG: spe:Spro_1724 condesin subunit E; HAMAP: Prokaryotic chromosome segregation/condensation protein MukE; PFAM: Prokaryotic chromosome segregation/condensation protein MukE YP_004505087.1 KEGG: spe:Spro_1725 cell division protein MukB; HAMAP: Chromosome partition protein MukB; PFAM: Prokaryotic chromosome segregation/condensation protein MukB, N-terminal YP_004505088.1 PFAM: YkuD domain; Peptidoglycan binding-like; KEGG: spe:Spro_1726 hypothetical protein YP_004505089.1 KEGG: spe:Spro_1727 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF882, bacterial YP_004505090.1 KEGG: spe:Spro_1728 beta-lactamase domain-containing protein YP_004505091.1 KEGG: spe:Spro_1729 aromatic amino acid aminotransferase; PFAM: Aminotransferase, class I/II YP_004505092.1 PFAM: Porin, Gram-negative type; KEGG: spe:Spro_1730 porin YP_004505093.1 PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Asparaginyl-tRNA synthetase, class IIb; HAMAP: Asparaginyl-tRNA synthetase; KEGG: spe:Spro_1731 asparaginyl-tRNA synthetase YP_004505094.1 TIGRFAM: Nicotinate phosphoribosyltransferase; HAMAP: Nicotinate phosphoribosyltransferase; KEGG: spe:Spro_1732 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like YP_004505095.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: spe:Spro_1733 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004505097.1 KEGG: spe:Spro_1734 aminopeptidase N; TIGRFAM: Peptidase M1, alanyl aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal YP_004505098.1 PFAM: ABC transporter-like; KEGG: spe:Spro_1735 aliphatic sulfonates transport ATP-binding subunit; SMART: ATPase, AAA+ type, core YP_004505099.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_1736 binding-protein-dependent transport systems inner membrane component YP_004505100.1 PFAM: Luciferase-like, subgroup; TIGRFAM: Alkanesulphonate monooxygenase, FMN-dependent; HAMAP: Alkanesulfonate monooxygenase; KEGG: spe:Spro_1737 alkanesulfonate monooxygenase YP_004505101.1 KEGG: spe:Spro_1738 alkanesulfonate transporter substrate-binding subunit; TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulphonates; SMART: Extracellular solute-binding protein, family 3 YP_004505102.1 TIGRFAM: NADPH-dependent ,FMN reductase, SsuE; KEGG: spe:Spro_1739 NAD(P)H-dependent FMN reductase; PFAM: NADPH-dependent FMN reductase YP_004505103.1 PFAM: Dihydroorotate dehydrogenase, class 1/ 2; TIGRFAM: Dihydroorotate dehydrogenase, class 2; HAMAP: Dihydroorotate dehydrogenase; KEGG: spe:Spro_1740 dihydroorotate dehydrogenase 2 YP_004505104.1 PFAM: Protein of unknown function DUF1379; KEGG: spe:Spro_1741 hypothetical protein YP_004505105.1 PFAM: Molybdenum cofactor sulfurase, C-terminal; MOSC, N-terminal beta barrel; Ferredoxin; KEGG: spe:Spro_1742 MOSC domain-containing protein YP_004505106.1 HAMAP: S-adenosyl-L-dependent RNA methyltransferase, bacteria,; KEGG: spe:Spro_1743 23S rRNA m(2)G2445 methyltransferase; PFAM: RNA methylase; THUMP; Protein of unknown function methylase YP_004505107.1 KEGG: spe:Spro_1744 ABC transporter ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004505108.1 KEGG: spe:Spro_1745 PqiA family integral membrane protein; TIGRFAM: Conserved hypothetical protein CHP00155; PFAM: Paraquat-inducible protein A YP_004505109.1 PFAM: Mammalian cell entry related; KEGG: spe:Spro_1746 paraquat-inducible protein B YP_004505110.1 PFAM: Protein of unknown function DUF330; KEGG: spe:Spro_1747 hypothetical protein YP_004505111.1 PFAM: Ribosome modulation factor; KEGG: spe:Spro_1748 ribosome modulation factor YP_004505112.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; KEGG: spe:Spro_1749 3-oxoacyl-(acyl carrier protein) synthase II; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal YP_004505113.1 PFAM: Helix-turn-helix, HxlR type; KEGG: spe:Spro_1750 HxlR family transcriptional regulator YP_004505114.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; HAMAP: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase; KEGG: spe:Spro_1751 3-hydroxydecanoyl-(acyl carrier protein) dehydratase YP_004505115.1 manually curated; KEGG: spe:Spro_1752 Lon protease YP_004505116.1 KEGG: spe:Spro_1753 hypothetical protein; HAMAP: UPF0268 protein ycbG; PFAM: Protein of unknown function DUF1047 YP_004505117.1 KEGG: spe:Spro_1754 outer membrane protein A YP_004505118.1 TIGRFAM: Cell division inhibitor SulA; HAMAP: Cell division inhibitor SulA; KEGG: spe:Spro_1755 SOS cell division inhibitor; PFAM: Cell division inhibitor SulA YP_004505119.1 PFAM: TfoX, N-terminal; TfoX, C-terminal; KEGG: spe:Spro_1756 regulator of competence-specific genes YP_004505120.1 TIGRFAM: Integral membrane protein, YccS/YhfK; Intergral membrane protein, YccS; KEGG: spe:Spro_1757 hypothetical protein YP_004505121.1 PFAM: Protein of unknown function DUF307; KEGG: spe:Spro_1758 hypothetical protein YP_004505122.1 PFAM: DNA helicase, UvrD/REP type; KEGG: spe:Spro_1759 DNA helicase IV YP_004505123.1 PFAM: MGS-like; TIGRFAM: Methylglyoxal synthase; HAMAP: Methylglyoxal synthase; KEGG: spe:Spro_1760 methylglyoxal synthase YP_004505124.1 KEGG: spe:Spro_1761 hypothetical protein; HAMAP: UPF0319 protein yccT; PFAM: Protein of unknown function DUF2057 YP_004505125.1 PFAM: CoA-binding; KEGG: spe:Spro_1762 CoA-binding domain-containing protein YP_004505126.1 TIGRFAM: Hemimethylated DNA-binding region; HAMAP: Heat shock protein hspQ; KEGG: spe:Spro_1763 heat shock protein HspQ; PFAM: Hemimethylated DNA-binding region YP_004505127.1 HAMAP: Ribosomal RNA large subunit methyltransferase I; KEGG: spe:Spro_1764 PUA domain-containing protein; SMART: Pseudouridine synthase/archaeosine transglycosylase YP_004505128.1 KEGG: spe:Spro_1765 acylphosphatase; HAMAP: Acylphosphatase; PFAM: Acylphosphatase-like YP_004505129.1 KEGG: spe:Spro_1766 DsrC family protein; TIGRFAM: DsrC-like protein; PFAM: DsrC-like protein YP_004505130.1 PFAM: Uncharacterised protein family UPF0005; KEGG: spe:Spro_1767 hypothetical protein YP_004505131.1 PFAM: Protein of unknown function DUF1295; KEGG: hch:HCH_06037 hypothetical protein YP_004505132.1 KEGG: hch:HCH_06036 nitroreductase YP_004505133.1 KEGG: lpj:JDM1_1415 phosphopantetheinyltransferase YP_004505134.1 KEGG: hch:HCH_06034 RedY-like protein YP_004505135.1 KEGG: hch:HCH_06033 polyketide synthase modules-like protein; PFAM: Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, N-terminal YP_004505136.1 KEGG: hch:HCH_06032 non-ribosomal peptide synthetase modules-like protein; PFAM: AMP-dependent synthetase/ligase YP_004505137.1 KEGG: hch:HCH_06031 7-keto-8-aminopelargonate synthetase-like protein; PFAM: Aminotransferase, class I/II; Phosphopantetheine-binding YP_004505138.1 KEGG: hch:HCH_06030 acyl carrier protein YP_004505139.1 PFAM: O-methyltransferase, family 2; KEGG: hch:HCH_06029 SAM-dependent methyltransferase YP_004505140.1 KEGG: hch:HCH_06028 ornithine/acetylornithine aminotransferase; PFAM: Aminotransferase class-III YP_004505141.1 KEGG: hch:HCH_06027 hypothetical protein YP_004505142.1 KEGG: hch:HCH_06026 phosphoenolpyruvate synthase/pyruvate phosphate dikinase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region YP_004505143.1 PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: hch:HCH_06024 hypothetical protein YP_004505144.1 KEGG: hch:HCH_06021 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central region; Acyl-CoA dehydrogenase, N-terminal YP_004505145.1 KEGG: spe:Spro_1806 hypothetical protein YP_004505146.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: spe:Spro_1810 nuclease; SMART: Extracellular Endonuclease, subunit A YP_004505147.1 KEGG: spe:Spro_1812 hypothetical protein YP_004505148.1 TIGRFAM: Flavoprotein WrbA; HAMAP: Flavoprotein wrbA; KEGG: spe:Spro_1813 TrpR binding protein WrbA; PFAM: Flavodoxin/nitric oxide synthase YP_004505149.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: spe:Spro_1814 lysine exporter protein LysE/YggA YP_004505150.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_1815 LysR family transcriptional regulator YP_004505151.1 KEGG: rah:Rahaq_1574 hypothetical protein YP_004505152.1 KEGG: spe:Spro_1816 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3 YP_004505153.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: spe:Spro_1817 hypothetical protein YP_004505154.1 KEGG: spe:Spro_1818 uracil-xanthine permease; TIGRFAM: Pyrimidine permease RutG, predicted; Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease YP_004505155.1 KEGG: spe:Spro_1819 flavin reductase domain-containing protein; TIGRFAM: Flavin reductase-like, FMN-binding, pyrimidine utilisation protein RutF; PFAM: Flavin reductase-like, FMN-binding YP_004505156.1 KEGG: spe:Spro_1820 alpha/beta hydrolase fold domain-containing protein; TIGRFAM: Pyrimidine utilisation protein RutD; PFAM: Alpha/beta hydrolase fold-1 YP_004505157.1 KEGG: spe:Spro_1821 endoribonuclease L-PSP; TIGRFAM: Endoribonuclease L-PSP, pyrimidine utilisation protein RutC; PFAM: Endoribonuclease L-PSP YP_004505158.1 KEGG: spe:Spro_1822 isochorismatase hydrolase; TIGRFAM: Isochorismatase-like, pyrimidine utilization, RutB; PFAM: Isochorismatase-like YP_004505159.1 KEGG: spe:Spro_1823 luciferase; TIGRFAM: Luciferase-like, pyrimidine utilisation protein RutA; PFAM: Luciferase-like, subgroup YP_004505160.1 PFAM: Transcriptional regulator, YcdC, C-terminal; Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: spe:Spro_1824 TetR family transcriptional regulator YP_004505161.1 PFAM: Amino acid permease-associated region; KEGG: spe:Spro_1825 D-alanine/D-serine/glycine permease YP_004505162.1 PFAM: Tol-Pal system, TolA; KEGG: eic:NT01EI_2858 protein TolA YP_004505163.1 PFAM: SNARE associated Golgi protein; KEGG: spe:Spro_1826 DedA family protein YP_004505164.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: spe:Spro_1827 antibiotic biosynthesis monooxygenase YP_004505165.1 PFAM: Crotonase, core; KEGG: spe:Spro_1828 enoyl-CoA hydratase/isomerase YP_004505166.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_1829 major facilitator transporter YP_004505167.1 TIGRFAM: Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase; KEGG: spe:Spro_1830 5-aminolevulinate synthase; PFAM: Aminotransferase, class I/II YP_004505168.1 KEGG: spe:Spro_1831 acetyl-CoA acetyltransferase; TIGRFAM: Thiolase YP_004505169.1 KEGG: spe:Spro_1832 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004505170.1 KEGG: spe:Spro_1833 LuxR family transcriptional regulator; PFAM: Autoinducer-binding; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004505171.1 PFAM: UspA; KEGG: spe:Spro_1834 UspA domain-containing protein YP_004505172.1 KEGG: spe:Spro_1835 malate/L-lactate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase YP_004505173.1 PFAM: Amino acid permease-associated region; KEGG: spe:Spro_1836 amino acid permease-associated protein YP_004505174.1 KEGG: spe:Spro_1837 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004505175.1 PFAM: Dihydrodipicolinate synthetase; KEGG: spe:Spro_1838 dihydrodipicolinate synthetase YP_004505176.1 KEGG: spe:Spro_1839 AraC family transcriptional regulator; PFAM: PAS fold-4; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004505177.1 KEGG: spe:Spro_1840 proline racemase; PFAM: Proline racemase YP_004505178.1 PFAM: FAD dependent oxidoreductase; KEGG: spe:Spro_1841 FAD dependent oxidoreductase YP_004505179.1 KEGG: spe:Spro_1842 ferredoxin YP_004505180.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding region; KEGG: spe:Spro_1843 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004505181.1 KEGG: spe:Spro_1844 hypothetical protein YP_004505182.1 PFAM: Extensin-like, C-terminal; KEGG: pct:PC1_1846 extensin family protein YP_004505183.1 KEGG: spe:Spro_1845 hypothetical protein YP_004505184.1 KEGG: spe:Spro_1846 hypothetical protein YP_004505185.1 PFAM: GlpM; KEGG: rah:Rahaq_2566 GlpM family protein YP_004505186.1 PFAM: Protein of unknown function DUF2594; KEGG: spe:Spro_1847 hypothetical protein YP_004505187.1 KEGG: spe:Spro_1848 response regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004505188.1 SMART: Excinuclease ABC, C subunit, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; TIGRFAM: Excinuclease ABC, C subunit; KEGG: spe:Spro_1849 excinuclease ABC subunit C; HAMAP: UvrABC system protein C; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein; Helix-hairpin-helix motif YP_004505189.1 PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; HAMAP: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: spe:Spro_1850 phosphatidylglycerophosphate synthetase YP_004505190.1 KEGG: spe:Spro_1853 hypothetical protein YP_004505191.1 PFAM: Sulfatase; Protein of unknown function DUF1705; KEGG: spe:Spro_1859 phosphoethanolamine transferase YP_004505192.1 KEGG: rah:Rahaq_0794 ribosomal-protein-alanine N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_004505193.1 KEGG: spe:Spro_1860 proline/glycine betaine transporter; TIGRFAM: Citrate-proton symport; PFAM: General substrate transporter; Osmosensory transporter coiled coil YP_004505194.1 KEGG: spe:Spro_1861 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004505195.1 PFAM: ABC transporter-like; Protein of unknown function DUF214, permase predicted; KEGG: spe:Spro_1862 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004505196.1 KEGG: spe:Spro_1863 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004505197.1 KEGG: ebi:EbC_18640 excinuclease cho; PFAM: Excinuclease ABC, C subunit, N-terminal; SMART: Excinuclease ABC, C subunit, N-terminal YP_004505198.1 KEGG: spe:Spro_1864 hypothetical protein YP_004505199.1 PFAM: Extracytoplasmic function sigma factor YlaC; KEGG: spe:Spro_1865 hypothetical protein YP_004505200.1 KEGG: spe:Spro_1866 hypothetical protein YP_004505201.1 KEGG: spe:Spro_1867 potassium/proton antiporter; HAMAP: Cell volume regulation protein A; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, C-terminal; Transporter-associated region YP_004505202.1 KEGG: spe:Spro_1868 hypothetical protein YP_004505203.1 PFAM: Acyltransferase 3; KEGG: rah:Rahaq_3585 acyltransferase 3 YP_004505204.1 PFAM: Acyltransferase 3; KEGG: spe:Spro_1869 glucans biosynthesis protein YP_004505205.1 KEGG: spe:Spro_1870 glucan biosynthesis protein G; HAMAP: Glucans biosynthesis protein G; PFAM: Glucan biosynthesis, periplasmic, MdoG C-terminal YP_004505206.1 manually curated; HAMAP: Glucans biosynthesis glucosyltransferase H; KEGG: spe:Spro_1871 glucosyltransferase MdoH; PFAM: Glycosyl transferase, family 2 YP_004505207.1 PFAM: Protein of unknown function DUF1375; KEGG: spe:Spro_1872 hypothetical protein YP_004505208.1 KEGG: spe:Spro_1873 hypothetical protein YP_004505209.1 KEGG: spe:Spro_1874 hypothetical protein YP_004505210.1 TIGRFAM: Yeast 2-isopropylmalate synthase; KEGG: spe:Spro_1875 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YP_004505211.1 KEGG: spe:Spro_1876 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004505212.1 KEGG: spe:Spro_1877 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004505213.1 PFAM: Protein of unknown function DUF395, YeeE/YedE; KEGG: spe:Spro_1878 hypothetical protein YP_004505214.1 PFAM: Protein of unknown function DUF395, YeeE/YedE; KEGG: spe:Spro_1879 hypothetical protein YP_004505215.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: spe:Spro_1880 glyoxalase/bleomycin resistance protein/dioxygenase YP_004505216.1 KEGG: spe:Spro_1881 amino acid/peptide transporter; TIGRFAM: Amino acid/peptide transporter; PFAM: Oligopeptide transporter YP_004505217.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_1882 major facilitator transporter YP_004505218.1 PFAM: YCII-related; KEGG: spe:Spro_1883 YCII-like protein YP_004505219.1 KEGG: spe:Spro_1884 lipid A biosynthesis lauroyl acyltransferase; TIGRFAM: Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase YP_004505221.1 KEGG: rah:Rahaq_2978 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004505222.1 HAMAP: UPF0176 protein yceA; PFAM: Rhodanese-like; KEGG: spe:Spro_1886 hypothetical protein; SMART: Rhodanese-like YP_004505223.1 KEGG: spe:Spro_1887 YceI family protein; HAMAP: Protein yceI; PFAM: Lipid/polyisoprenoid-binding, YceI-like YP_004505224.1 KEGG: spe:Spro_1888 cytochrome b561 YP_004505225.1 PFAM: Uncharacterised protein family UPF0118; KEGG: spe:Spro_1889 transport protein YP_004505226.1 KEGG: spe:Spro_1891 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004505227.1 KEGG: spe:Spro_1892 N-methyltryptophan oxidase; PFAM: FAD dependent oxidoreductase YP_004505228.1 KEGG: spe:Spro_1893 biofilm formation regulatory protein BssS YP_004505229.1 KEGG: spe:Spro_1894 hypothetical protein YP_004505230.1 PFAM: DNA damage-inducible protein DinI-like; KEGG: spe:Spro_1895 DNA damage-inducible protein I YP_004505231.1 PFAM: Amidohydrolase 1; TIGRFAM: Dihydroorotase homodimeric type; HAMAP: Dihydroorotase; KEGG: spe:Spro_1896 dihydroorotase YP_004505232.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: spe:Spro_1897 antibiotic biosynthesis monooxygenase YP_004505233.1 KEGG: spe:Spro_1898 ribonuclease E; TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain YP_004505234.1 TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: spe:Spro_1899 23S rRNA pseudouridylate synthase C; SMART: RNA-binding S4 YP_004505235.1 TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: spe:Spro_1900 maf protein; PFAM: Maf-like protein YP_004505236.1 PFAM: Protein of unknown function DUF177; KEGG: spe:Spro_1901 hypothetical protein YP_004505237.1 TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: rah:Rahaq_2959 ribosomal protein L32; PFAM: Ribosomal protein L32p YP_004505238.1 TIGRFAM: Phospholipid biosynthesis protein, PlsX like; HAMAP: Phospholipid biosynthesis protein, PlsX like; KEGG: spe:Spro_1903 glycerol-3-phosphate acyltransferase PlsX; PFAM: Fatty acid synthesis plsX protein YP_004505239.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); KEGG: spe:Spro_1904 3-oxoacyl-(acyl carrier protein) synthase III YP_004505240.1 TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; KEGG: spe:Spro_1905 malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase YP_004505241.1 KEGG: spe:Spro_1906 3-ketoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004505242.1 TIGRFAM: Acyl carrier protein (ACP); HAMAP: Acyl carrier protein (ACP); KEGG: spe:Spro_1907 acyl carrier protein; PFAM: Phosphopantetheine-binding YP_004505243.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; KEGG: spe:Spro_1908 3-oxoacyl-(acyl carrier protein) synthase II; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal YP_004505244.1 TIGRFAM: Aminodeoxychorismate lyase, class IV; KEGG: spe:Spro_1909 4-amino-4-deoxychorismate lyase; PFAM: Aminotransferase, class IV YP_004505245.1 KEGG: spe:Spro_1910 aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family YceG-like; PFAM: Uncharacterised protein family YceG-like YP_004505246.1 PFAM: Thymidylate kinase-like; TIGRFAM: Thymidylate kinase; HAMAP: Thymidylate kinase; KEGG: spe:Spro_1911 thymidylate kinase YP_004505247.1 KEGG: spe:Spro_1912 DNA polymerase III subunit delta'; TIGRFAM: DNA polymerase III, delta prime subunit; PFAM: DNA polymerase III, delta subunit, C-terminal YP_004505248.1 KEGG: spe:Spro_1913 metallodependent hydrolase; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related YP_004505249.1 TIGRFAM: Phosphotransferase system, glucose-specific IIBC component; Phosphotransferase system, maltose/glucose-specific IIC component; Phosphotransferase system, glucose-like IIB component; KEGG: spe:Spro_1914 PTS system glucose-specific transporter subunits IIBC; PFAM: Phosphotransferase system, EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_004505250.1 KEGG: spe:Spro_1915 manganese transport regulator MntR; PFAM: Iron dependent repressor; SMART: Iron dependent repressor YP_004505251.1 TIGRFAM: Natural resistance-associated macrophage protein; HAMAP: Manganese transport protein mntH; KEGG: spe:Spro_1916 Mn2+/Fe2+ transporter; PFAM: Natural resistance-associated macrophage protein YP_004505252.1 KEGG: kva:Kvar_4261 lipoprotein YP_004505253.1 KEGG: abb:ABBFA_002554 hypothetical protein; PFAM: SH3, type 3; SMART: Bacterial SH3-like region YP_004505254.1 KEGG: spe:Spro_1917 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004505255.1 PFAM: Helix-turn-helix, HxlR type; KEGG: spe:Spro_1918 HxlR family transcriptional regulator YP_004505256.1 KEGG: spe:Spro_1919 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004505257.1 PFAM: Histidine triad (HIT) protein; KEGG: spe:Spro_1920 histidine triad (HIT) protein YP_004505258.1 PFAM: Protein of unknown function DUF1425; KEGG: spe:Spro_1921 hypothetical protein YP_004505259.1 TIGRFAM: Uncharacterised conserved lipoprotein, UCP02722; KEGG: spe:Spro_1922 membrane lipoprotein lipid attachment site YP_004505260.1 KEGG: spe:Spro_1923 thiamine kinase; PFAM: Aminoglycoside phosphotransferase YP_004505261.1 KEGG: spe:Spro_1924 beta-hexosaminidase; HAMAP: Beta-hexosaminidase; PFAM: Glycoside hydrolase, family 3, N-terminal YP_004505262.1 KEGG: spe:Spro_1925 hypothetical protein; HAMAP: UPF0227 protein ycfP; PFAM: Uncharacterised protein family UPF0227 YP_004505263.1 KEGG: spe:Spro_1926 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004505264.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: spe:Spro_1927 hypothetical protein YP_004505265.1 PFAM: Transcriptional regulator, Rrf2; KEGG: spe:Spro_1928 BadM/Rrf2 family transcriptional regulator YP_004505266.1 KEGG: spe:Spro_1929 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004505267.1 KEGG: spe:Spro_1930 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004505268.1 KEGG: spe:Spro_1931 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004505269.1 KEGG: spe:Spro_1932 amino acid/peptide transporter; TIGRFAM: Amino acid/peptide transporter; PFAM: Oligopeptide transporter YP_004505270.1 HAMAP: Glyoxylate/hydroxypyruvate reductase A; KEGG: spe:Spro_1933 NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_004505271.1 HAMAP: hydrolase ycdX; PFAM: PHP, C-terminal; KEGG: spe:Spro_1934 hydrolase; SMART: Polymerase/histidinol phosphatase, N-terminal YP_004505272.1 KEGG: spe:Spro_1935 cytoplasmic chaperone TorD family protein YP_004505273.1 PFAM: Protein of unknown function DUF533; KEGG: spe:Spro_1936 hypothetical protein YP_004505274.1 KEGG: spe:Spro_1937 oligopeptidase B; PFAM: Peptidase S9A, oligopeptidase, N-terminal beta-propeller; Peptidase S9, prolyl oligopeptidase, catalytic domain YP_004505275.1 KEGG: spe:Spro_1938 exodeoxyribonuclease X; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease YP_004505276.1 KEGG: ypb:YPTS_1781 hypothetical protein YP_004505277.1 TIGRFAM: RNA polymerase-binding, DksA; KEGG: spe:Spro_1939 TraR/DksA family transcriptional regulator YP_004505278.1 KEGG: spe:Spro_1940 proline iminopeptidase; TIGRFAM: Peptidase S33, proline iminopeptidase 1; PFAM: Alpha/beta hydrolase fold-1 YP_004505279.1 PFAM: DNA polymerase III-theta, bacterial; KEGG: spe:Spro_1941 DNA polymerase III subunit theta YP_004505280.1 manually curated; KEGG: spe:Spro_1942 ferroxidase; PFAM: Ferritin/Dps protein YP_004505281.1 PFAM: Copper resistance protein CopC, core; KEGG: spe:Spro_1943 copper resistance protein CopC YP_004505282.1 PFAM: Copper resistance D; KEGG: spe:Spro_1944 copper resistance D domain-containing protein YP_004505283.1 PFAM: Protein of unknown function DUF2511; KEGG: spe:Spro_1945 hypothetical protein YP_004505284.1 KEGG: aha:AHA_2965 hypothetical protein YP_004505286.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: ddd:Dda3937_04484 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase YP_004505288.1 PFAM: Isochorismatase-like; KEGG: pfl:PFL_2630 isochorismatase YP_004505289.1 KEGG: spe:Spro_1948 hypothetical protein YP_004505290.1 KEGG: spe:Spro_1595 hypothetical protein YP_004505291.1 KEGG: yen:YE3292 transposase for insertion element IS1669; manually curated; PFAM: Integrase, catalytic core YP_004505292.1 KEGG: sea:SeAg_B4795 ISPsy11, transposase OrfA YP_004505293.1 HAMAP: Uncharacterised protein family, TER reductase; KEGG: spe:Spro_1949 trans-2-enoyl-CoA reductase; PFAM: Uncharacterised protein family, TER reductase YP_004505294.1 KEGG: spe:Spro_1950 hypothetical protein YP_004505295.1 KEGG: spe:Spro_1951 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004505297.1 KEGG: spe:Spro_1952 hypothetical protein YP_004505299.1 KEGG: spe:Spro_1954 hypothetical protein YP_004505300.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: axy:AXYL_04229 LysR family regulatory helix-turn-helix protein 141 YP_004505301.1 TIGRFAM: 3-oxoadipate enol-lactonase; KEGG: mci:Mesci_2298 3-oxoadipate enol-lactonase; PFAM: Alpha/beta hydrolase fold-1 YP_004505302.1 KEGG: spe:Spro_1958 DNA-binding transcriptional activator DcuR; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004505303.1 KEGG: spe:Spro_1959 sensory histidine kinase DcuS; PFAM: ATP-binding region, ATPase-like; PAS fold; SMART: ATP-binding region, ATPase-like YP_004505304.1 PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: spe:Spro_1960 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_004505305.1 PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: spe:Spro_1961 periplasmic binding protein/LacI transcriptional regulator YP_004505306.1 PFAM: ABC transporter-like; KEGG: spe:Spro_1962 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004505307.1 PFAM: Bacterial inner-membrane translocator; KEGG: spe:Spro_1963 monosaccharide-transporting ATPase YP_004505308.1 PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: spe:Spro_1964 periplasmic binding protein/LacI transcriptional regulator YP_004505309.1 KEGG: spe:Spro_1965 hypothetical protein YP_004505310.1 KEGG: spe:Spro_1966 YaeC family lipoprotein; TIGRFAM: Lipoprotein YaeC; PFAM: NLPA lipoprotein YP_004505311.1 KEGG: spe:Spro_1967 hypothetical protein YP_004505312.1 PFAM: UspA; KEGG: spe:Spro_1969 UspA domain-containing protein YP_004505313.1 KEGG: plu:plu4352 hypothetical protein; manually curated; PFAM: Carbohydrate/purine kinase; Helix-turn-helix, type 11 YP_004505314.1 KEGG: pay:PAU_03909 hypothetical protein; HAMAP: Pseudouridine-5'-phosphate glycosidase; PFAM: Indigoidine synthase A like protein YP_004505315.1 KEGG: xbo:XBJ1_2252 NUP family transport protein; TIGRFAM: Concentrative nucleoside transporter, metazoan/bacterial; PFAM: Na dependent nucleoside transporter, C-terminal; Na dependent nucleoside transporter; Nucleoside recognition YP_004505316.1 PFAM: Protein of unknown function DUF1097; KEGG: vvy:VVA0739 hypothetical protein YP_004505317.1 KEGG: spe:Spro_1976 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004505318.1 PFAM: Polyketide cyclase/dehydrase; KEGG: spe:Spro_1977 hypothetical protein YP_004505319.1 HAMAP: ATP-dependent Clp protease proteolytic subunit; KEGG: spe:Spro_1978 ATP-dependent Clp protease proteolytic subunit; PFAM: Peptidase S14, ClpP YP_004505320.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-3; KEGG: har:HEAR2418 hypothetical protein; SMART: Diguanylate cyclase, predicted; PAC motif YP_004505321.1 KEGG: spe:Spro_1982 GTP-dependent nucleic acid-binding protein EngD; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Protein of unknown function DUF933; GTP-binding protein, HSR1-related YP_004505322.1 PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: spe:Spro_1983 sulfate transporter YP_004505323.1 PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; KEGG: spe:Spro_1984 peptidyl-tRNA hydrolase YP_004505324.1 PFAM: Protein of unknown function DUF2583; KEGG: spe:Spro_1985 hypothetical protein YP_004505325.1 TIGRFAM: Phosphoribosyl pyrophosphokinase; KEGG: spe:Spro_1986 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase YP_004505326.1 PFAM: GHMP kinase; GHMP kinase, C-terminal; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: spe:Spro_1987 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_004505327.1 TIGRFAM: Outer membrane lipoprotein LolB; HAMAP: Outer-membrane lipoprotein lolB; KEGG: spe:Spro_1988 outer membrane lipoprotein LolB; PFAM: Outer membrane lipoprotein LolB YP_004505328.1 PFAM: Chitin-binding, domain 3; KEGG: psm:PSM_B0253 chitinase B YP_004505329.1 TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; HAMAP: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; KEGG: spe:Spro_1989 glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal YP_004505330.1 TIGRFAM: Peptide chain release factor 1; HAMAP: Peptide chain release factor 1; KEGG: spe:Spro_1990 peptide chain release factor 1; PFAM: Class I peptide chain release factor; Peptide chain release factor YP_004505331.1 KEGG: spe:Spro_1991 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: Methyltransferase small YP_004505332.1 PFAM: Invasion gene expression up-regulator, SirB; KEGG: spe:Spro_1992 invasion gene expression up-regulator SirB YP_004505333.1 KEGG: spe:Spro_1993 transcriptional regulator YP_004505334.1 PFAM: DAHP synthetase I/KDSA; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; HAMAP: 3-deoxy-8-phosphooctulonate synthase; KEGG: spe:Spro_1994 2-dehydro-3-deoxyphosphooctonate aldolase YP_004505335.1 KEGG: spe:Spro_1995 sulfate transporter YchM; TIGRFAM: Sulphate anion transporter; PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS YP_004505336.1 KEGG: spe:Spro_1996 hypothetical protein; HAMAP: UPF0303 protein; PFAM: Protein of unknown function DUF336 YP_004505337.1 TIGRFAM: Transcription-repair coupling factor; PFAM: Transcription-repair-coupling factor; Transcription factor CarD; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; KEGG: spe:Spro_1998 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004505338.1 KEGG: spe:Spro_1999 pyridoxal-5'-phosphate-dependent protein subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004505339.1 PFAM: YheO-like; KEGG: spe:Spro_2000 YheO domain-containing protein YP_004505340.1 KEGG: spe:Spro_2001 outer membrane-specific lipoprotein transporter subunit LolC; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Protein of unknown function DUF214, permase predicted YP_004505341.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Lipoprotein releasing system, ATP-binding protein; KEGG: spe:Spro_2002 lipoprotein transporter ATP-binding subunit; PFAM: ABC transporter-like YP_004505342.1 KEGG: spe:Spro_2003 outer membrane-specific lipoprotein transporter subunit LolE; TIGRFAM: Lipoprotein releasing system, transmembrane protein LolE; Lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Protein of unknown function DUF214, permase predicted YP_004505343.1 HAMAP: N-acetyl-D-glucosamine kinase; KEGG: spe:Spro_2004 N-acetyl-D-glucosamine kinase; PFAM: ROK YP_004505344.1 KEGG: spe:Spro_2005 NAD-dependent deacetylase; HAMAP: NAD-dependent deacetylase; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2 YP_004505345.1 PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: spe:Spro_2006 RpiR family transcriptional regulator YP_004505346.1 KEGG: spe:Spro_2007 glycoside hydrolase; PFAM: Glycoside hydrolase, family 4 YP_004505347.1 KEGG: spe:Spro_2008 PTS system glucose-like transporter subunit IIB; TIGRFAM: Phosphotransferase system, glucose-like IIB component; PFAM: Phosphotransferase system, EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_004505348.1 PFAM: Peptidase M20, dimerisation; Peptidase M20; TIGRFAM: Peptidase M20B, tripeptide aminopeptidase; HAMAP: Peptidase T; KEGG: spe:Spro_2009 peptidase T YP_004505349.1 KEGG: spe:Spro_2010 hypothetical protein; PFAM: Malate/L-lactate dehydrogenase YP_004505350.1 KEGG: bam:Bamb_1993 beta-lactamase domain-containing protein YP_004505351.1 KEGG: bam:Bamb_1991 hypothetical protein YP_004505352.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bam:Bamb_1990 LysR family transcriptional regulator YP_004505353.1 KEGG: spe:Spro_2011 cupin 4 family protein; PFAM: Cupin 4; SMART: Transcription factor jumonji/aspartyl beta-hydroxylase YP_004505354.1 KEGG: spe:Spro_2012 sensor protein PhoQ; PFAM: PhoQ Sensor; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004505355.1 KEGG: spe:Spro_2013 DNA-binding transcriptional regulator PhoP; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004505356.1 KEGG: spe:Spro_2017 transcriptional regulator; PFAM: Aminotransferase, class I/II; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004505357.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_2018 GCN5-related N-acetyltransferase YP_004505358.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_2019 GCN5-related N-acetyltransferase YP_004505359.1 TIGRFAM: Adenylosuccinate lyase; KEGG: spe:Spro_2020 adenylosuccinate lyase; PFAM: Fumarate lyase; Adenylosuccinate lyase C-terminal YP_004505360.1 KEGG: spe:Spro_2021 hypothetical protein; HAMAP: Uncharacterised protein family UPF0274; PFAM: Uncharacterised protein family UPF0274 YP_004505361.1 TIGRFAM: tRNA-specific 2-thiouridylase; HAMAP: tRNA-specific 2-thiouridylase; KEGG: spe:Spro_2022 tRNA-specific 2-thiouridylase MnmA; PFAM: tRNA methyl transferase-like YP_004505362.1 PFAM: NUDIX hydrolase domain; KEGG: spe:Spro_2023 NUDIX hydrolase YP_004505363.1 KEGG: spe:Spro_2024 pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F YP_004505364.1 TIGRFAM: Isocitrate dehydrogenase NADP-dependent, prokaryotic; KEGG: spe:Spro_2025 isocitrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase YP_004505365.1 KEGG: spe:Spro_2605 peptidase S24/S26 domain-containing protein YP_004505366.1 KEGG: pap:PSPA7_3898 transcriptional regulator LasR; PFAM: Transcription regulator LuxR, C-terminal; Autoinducer-binding; SMART: Transcription regulator LuxR, C-terminal YP_004505367.1 KEGG: plu:plu1650 hypothetical protein YP_004505368.1 PFAM: Protein of unknown function DUF159; KEGG: ebi:EbC_32170 conserved uncharacterized protein YP_004505369.1 KEGG: ddc:Dd586_3999 hypothetical protein YP_004505370.1 PFAM: Tol-Pal system, TolA; KEGG: spe:Spro_2049 colicin uptake-like protein YP_004505373.1 PFAM: Uncharacterised protein family UPF0118; KEGG: spe:Spro_2050 hypothetical protein YP_004505375.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rah:Rahaq_2484 GCN5-related N-acetyltransferase YP_004505376.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pag:PLES_12641 major facilitator superfamily (MFS) transporter YP_004505377.1 KEGG: spe:Spro_2053 LacI family transcription regulator; PFAM: HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004505378.1 KEGG: spe:Spro_2054 xylose isomerase domain-containing protein; PFAM: Xylose isomerase, TIM barrel domain YP_004505379.1 PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: spe:Spro_2055 oxidoreductase domain-containing protein YP_004505380.1 KEGG: spe:Spro_2057 hypothetical protein YP_004505381.1 PFAM: Protein of unknown function DUF1835; KEGG: spe:Spro_2058 hypothetical protein YP_004505382.1 PFAM: Pentapeptide repeat; KEGG: spe:Spro_2059 pentapeptide repeat-containing protein YP_004505383.1 KEGG: bpt:Bpet3617 hypothetical protein YP_004505384.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bpy:Bphyt_7118 lysine exporter protein LysE/YggA YP_004505385.1 KEGG: spe:Spro_2061 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004505386.1 KEGG: pst:PSPTO_2262 hypothetical protein YP_004505387.1 KEGG: spe:Spro_2063 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004505388.1 PFAM: FAD dependent oxidoreductase; KEGG: spe:Spro_2064 FAD dependent oxidoreductase YP_004505389.1 PFAM: Aldehyde dehydrogenase; KEGG: spe:Spro_2065 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase YP_004505390.1 KEGG: spe:Spro_2066 DNA-binding transcriptional repressor PuuR; PFAM: Cupin 2, conserved barrel; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004505391.1 KEGG: spe:Spro_2067 gamma-glutamyl-gamma-aminobutyrate hydrolase; PFAM: Peptidase C26 YP_004505392.1 KEGG: spe:Spro_2068 glutamate--putrescine ligase; PFAM: Glutamine synthetase, catalytic region YP_004505394.1 PFAM: Amino acid permease-associated region; KEGG: spe:Spro_2069 amino acid permease-associated protein YP_004505395.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: spe:Spro_2070 hypothetical protein YP_004505396.1 KEGG: spe:Spro_2071 hypothetical protein YP_004505397.1 PFAM: Nucleoside-specific channel-forming protein, Tsx-like; KEGG: spe:Spro_2072 nucleoside-specific channel-forming protein Tsx YP_004505399.1 KEGG: spe:Spro_2073 hypothetical protein YP_004505400.1 KEGG: spe:Spro_2074 chorismate mutase; TIGRFAM: Chorismate mutase, periplasmic; PFAM: Chorismate mutase, type II YP_004505401.1 PFAM: Beta-lactamase-related; KEGG: spe:Spro_2075 beta-lactamase YP_004505402.1 KEGG: spe:Spro_2076 N-formylglutamate amidohydrolase; TIGRFAM: N-formylglutamate deformylase; PFAM: N-formylglutamate amidohydrolase YP_004505403.1 PFAM: Amidohydrolase 1; TIGRFAM: Imidazolonepropionase; HAMAP: Imidazolonepropionase; KEGG: spe:Spro_2077 imidazolonepropionase YP_004505404.1 TIGRFAM: Histidine utilization repressor; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: spe:Spro_2078 histidine utilization repressor; SMART: HTH transcriptional regulator, GntR YP_004505405.1 KEGG: spe:Spro_2079 N-formimino-L-glutamate deiminase; TIGRFAM: Formiminoglutamate deiminase; PFAM: Amidohydrolase 1 YP_004505406.1 PFAM: HutD; KEGG: spe:Spro_2080 hypothetical protein YP_004505407.1 PFAM: ABC-type glycine betaine transport system, substrate-binding region; KEGG: ddd:Dda3937_01664 UreA carboxylase-related ABC transporter periplasmic substrate-binding protein YP_004505408.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rah:Rahaq_2161 binding-protein-dependent transport systems inner membrane component YP_004505409.1 PFAM: ABC transporter-like; KEGG: rah:Rahaq_2162 ABC transporter; SMART: ATPase, AAA+ type, core YP_004505410.1 PFAM: Aminotransferase, class I/II; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: rah:Rahaq_2165 histidinol-phosphate aminotransferase YP_004505411.1 KEGG: rah:Rahaq_2166 (S)-mandelate dehydrogenase; PFAM: FMN-dependent dehydrogenase YP_004505412.1 KEGG: spe:Spro_2081 LacI family transcription regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004505413.1 TIGRFAM: Sucrose-6-phosphate hydrolase; PFAM: Glycosyl hydrolases family 32, N-terminal; Glycosyl hydrolase 32, C-terminal; KEGG: spe:Spro_2082 sucrose-6-phosphate hydrolase; SMART: Glycoside hydrolase, family 32 YP_004505414.1 KEGG: spe:Spro_2083 galactoside permease; TIGRFAM: Proton/sugar symporter, LacY; PFAM: Proton/sugar symporter, LacY YP_004505415.1 KEGG: rah:Rahaq_2168 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004505416.1 KEGG: rah:Rahaq_2169 hypothetical protein YP_004505417.1 PFAM: Histidinol dehydrogenase, prokaryotic-type; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; HAMAP: Histidinol dehydrogenase, prokaryotic-type; KEGG: rah:Rahaq_2170 histidinol dehydrogenase YP_004505418.1 PFAM: ABC transporter-like; KEGG: rah:Rahaq_2171 ABC transporter; SMART: ATPase, AAA+ type, core YP_004505419.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rah:Rahaq_2172 binding-protein-dependent transport systems inner membrane component YP_004505420.1 KEGG: rah:Rahaq_2173 hypothetical protein YP_004505421.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_2084 major facilitator transporter YP_004505422.1 KEGG: aha:AHA_3212 hypothetical protein YP_004505423.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: aha:AHA_3213 TetR family transcriptional regulator YP_004505424.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ebi:EbC_44900 LysR family transcriptional regulator YP_004505425.1 KEGG: ddc:Dd586_1724 amidohydrolase; PFAM: Amidohydrolase 1 YP_004505426.1 PFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; TIGRFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; HAMAP: Phosphoenolpyruvate carboxykinase [ATP]; KEGG: spe:Spro_2098 phosphoenolpyruvate carboxykinase YP_004505427.1 PFAM: 2-hydroxycarboxylate transporter; KEGG: spe:Spro_2099 citrate carrier protein YP_004505428.1 KEGG: spe:Spro_2101 hypothetical protein YP_004505429.1 KEGG: spe:Spro_2102 hypothetical protein YP_004505431.1 PFAM: ASCH domain; KEGG: spe:Spro_2104 hypothetical protein YP_004505432.1 KEGG: spe:Spro_2105 hypothetical protein YP_004505433.1 PFAM: Protein of unknown function DUF1480; KEGG: spe:Spro_2106 hypothetical protein YP_004505434.1 PFAM: Spore coat protein U; KEGG: spe:Spro_2107 spore coat U domain-containing protein YP_004505435.1 PFAM: Fimbrial biogenesis outer membrane usher protein; KEGG: spe:Spro_2108 fimbrial biogenesis outer membrane usher protein YP_004505436.1 KEGG: spe:Spro_2109 chaperone protein YP_004505437.1 PFAM: Spore coat protein U; KEGG: spe:Spro_2110 spore coat U domain-containing protein YP_004505438.1 PFAM: Spore coat protein U; KEGG: spe:Spro_2111 spore coat U domain-containing protein YP_004505439.1 PFAM: Spore coat protein U; KEGG: spe:Spro_2112 spore coat U domain-containing protein YP_004505440.1 TIGRFAM: Nop2p; HAMAP: Ribosomal RNA small subunit methyltransferase F; KEGG: spe:Spro_2113 rRNA (cytosine-C(5)-)-methyltransferase RsmF; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p YP_004505441.1 PFAM: Mammalian cell entry related; KEGG: yen:YE1864 hypothetical protein YP_004505442.1 KEGG: spe:Spro_2116 PqiA family integral membrane protein; TIGRFAM: Conserved hypothetical protein CHP00155; PFAM: Paraquat-inducible protein A YP_004505443.1 KEGG: spe:Spro_2117 GAF sensor protein; PFAM: GAF; SMART: GAF YP_004505444.1 KEGG: spe:Spro_2118 solute/DNA competence effector; HAMAP: ProP effector; PFAM: Fertility inhibition FinO-like YP_004505445.1 SMART: Peptidase S41; PDZ/DHR/GLGF; TIGRFAM: Peptidase S41A, C-terminal protease; KEGG: spe:Spro_2119 carboxy-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF YP_004505446.1 KEGG: tra:Trad_0278 hypothetical protein YP_004505447.1 HAMAP: protease htpX; KEGG: spe:Spro_2120 heat shock protein HtpX YP_004505448.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_2121 major facilitator transporter YP_004505449.1 KEGG: spe:Spro_2122 IclR family transcriptional regulator; PFAM: Transcriptional regulator IclR, C-terminal; Transcriptional regulator IclR, N-terminal; SMART: Transcriptional regulator IclR, N-terminal YP_004505450.1 PFAM: Sodium:dicarboxylate symporter; KEGG: spe:Spro_2123 sodium:dicarboxylate symporter YP_004505451.1 PFAM: Protein of unknown function DUF457, transmembrane; KEGG: spe:Spro_2124 hypothetical protein YP_004505452.1 KEGG: spe:Spro_2125 2-deoxyglucose-6-phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004505453.1 KEGG: spe:Spro_2126 membrane-bound protease YP_004505454.1 KEGG: spe:Spro_2127 yfeABCD locus regulator YP_004505455.1 PFAM: Fructosamine/Ketosamine-3-kinase; KEGG: spe:Spro_2128 fructosamine kinase YP_004505456.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_2129 GCN5-related N-acetyltransferase YP_004505457.1 PFAM: ABC-3; KEGG: spe:Spro_2130 ABC-3 protein YP_004505458.1 PFAM: ABC-3; KEGG: spe:Spro_2131 ABC-3 protein YP_004505459.1 PFAM: ABC transporter-like; KEGG: spe:Spro_2132 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004505460.1 PFAM: ABC transporter metal-binding lipoprotein; KEGG: spe:Spro_2133 periplasmic solute binding protein YP_004505461.1 KEGG: spe:Spro_2134 hypothetical protein YP_004505462.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: spe:Spro_2135 lytic transglycosylase catalytic YP_004505463.1 KEGG: spe:Spro_2136 gluconate 2-dehydrogenase YP_004505464.1 KEGG: spe:Spro_2137 gluconate 2-dehydrogenase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal YP_004505465.1 KEGG: spe:Spro_2138 gluconate 2-dehydrogenase; PFAM: Cytochrome c, class I YP_004505466.1 KEGG: spe:Spro_2139 serine transporter YP_004505467.1 PFAM: Periplasmic binding protein; KEGG: spe:Spro_2140 periplasmic binding protein YP_004505468.1 KEGG: spe:Spro_2141 multiple drug resistance protein MarC; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: Multiple antibiotic resistance (MarC)-related YP_004505469.1 KEGG: spe:Spro_2142 hypothetical protein YP_004505471.1 KEGG: spe:Spro_2144 threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding YP_004505472.1 PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal; manually curated; TIGRFAM: Translation initiation factor 3; KEGG: ypi:YpsIP31758_1713 translation initiation factor IF-3; HAMAP: Translation initiation factor IF-3 YP_004505473.1 KEGG: spe:Spro_2146 50S ribosomal protein L35; TIGRFAM: Ribosomal protein L35; PFAM: Ribosomal protein L35 YP_004505474.1 KEGG: spe:Spro_2147 50S ribosomal protein L20; TIGRFAM: Ribosomal protein L20; PFAM: Ribosomal protein L20 YP_004505475.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain; KEGG: spe:Spro_2148 phenylalanyl-tRNA synthetase subunit alpha; PFAM: Phenylalanyl-tRNA synthetase alpha chain; Phenylalanyl-tRNA synthetase, class II, N-terminal YP_004505476.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: spe:Spro_2149 phenylalanyl-tRNA synthetase subunit beta YP_004505477.1 TIGRFAM: Integration host factor, alpha subunit; PFAM: Histone-like bacterial DNA-binding protein; KEGG: spe:Spro_2150 integration host factor subunit alpha; SMART: Histone-like bacterial DNA-binding protein YP_004505479.1 PFAM: Protein of unknown function DUF2502; KEGG: rah:Rahaq_2828 hypothetical protein YP_004505480.1 KEGG: spe:Spro_2151 vtamin B12-transporter permease; HAMAP: Vitamin B12 import system permease btuC; PFAM: Bacterial transport system permease YP_004505481.1 KEGG: spe:Spro_2152 glutathione peroxidase; PFAM: Glutathione peroxidase YP_004505482.1 SMART: ATPase, AAA+ type, core; HAMAP: Vitamin B12 import ATP-binding protein btuD; KEGG: spe:Spro_2153 vitamin B12-transporter ATPase; PFAM: ABC transporter-like YP_004505483.1 HAMAP: UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; KEGG: spe:Spro_2154 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_004505484.1 KEGG: spe:Spro_2155 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; HAMAP: Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase; PFAM: Glycosyl transferase, family 2 YP_004505485.1 HAMAP: Bifunctional polymyxin resistance protein ArnA; KEGG: spe:Spro_2156 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; PFAM: NAD-dependent epimerase/dehydratase; Formyl transferase, C-terminal; Formyl transferase, N-terminal YP_004505486.1 KEGG: spe:Spro_2157 polysaccharide deacetylase; HAMAP: 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; PFAM: Polysaccharide deacetylase YP_004505487.1 KEGG: spe:Spro_2158 4-amino-4-deoxy-L-arabinose transferase; HAMAP: Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase; PFAM: Glycosyl transferase, family 39 YP_004505488.1 KEGG: spe:Spro_2159 hypothetical protein; HAMAP: 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; PFAM: Protein of unknown function DUF6, transmembrane YP_004505489.1 HAMAP: 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; KEGG: spe:Spro_2160 hypothetical protein YP_004505490.1 PFAM: NLP/P60; KEGG: spe:Spro_2161 NLP/P60 protein YP_004505491.1 TIGRFAM: Lipoyltransferase/lipoate-protein ligase; HAMAP: Lipoate-protein ligase A; KEGG: spe:Spro_2162 lipoate-protein ligase A; PFAM: Lipoate protein ligase, C-terminal; Biotin/lipoate A/B protein ligase YP_004505492.1 manually curated; PFAM: Diguanylate phosphodiesterase, predicted; KEGG: spe:Spro_2163 diguanylate phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted YP_004505493.1 KEGG: spe:Spro_2164 hypothetical protein; HAMAP: UPF0061 protein ydiU; PFAM: Uncharacterised protein family UPF0061 YP_004505494.1 PFAM: ABC transporter-like; KEGG: spe:Spro_2165 hemin importer ATP-binding subunit; SMART: ATPase, AAA+ type, core YP_004505495.1 PFAM: Bacterial transport system permease; KEGG: spe:Spro_2166 transport system permease YP_004505496.1 PFAM: Periplasmic binding protein; KEGG: spe:Spro_2167 periplasmic binding protein YP_004505497.1 PFAM: Haemin-degrading; KEGG: spe:Spro_2168 hemin-degrading family protein YP_004505498.1 KEGG: spe:Spro_2169 TonB-dependent heme/hemoglobin receptor family protein; TIGRFAM: TonB-dependent haem/haemoglobin receptor; TonB-dependent haemoglobin/transferrin/lactoferrin receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel YP_004505499.1 PFAM: Hemin uptake protein hemP; KEGG: spe:Spro_2170 hypothetical protein YP_004505500.1 KEGG: spe:Spro_2171 glutathione peroxidase; PFAM: Glutathione peroxidase YP_004505501.1 TIGRFAM: DHAP synthase, class 1; KEGG: spe:Spro_2172 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_004505502.1 KEGG: spe:Spro_2173 hypothetical protein; HAMAP: Protein of unknown function DUF299, phosphotransferase, predicted; PFAM: Protein of unknown function DUF299, phosphotransferase, predicted YP_004505503.1 TIGRFAM: Phosphoenolpyruvate synthase; KEGG: spe:Spro_2174 phosphoenolpyruvate synthase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; PEP-utilising enzyme YP_004505504.1 PFAM: Uncharacterised protein family UPF0118; KEGG: spe:Spro_2175 hypothetical protein YP_004505505.1 KEGG: spe:Spro_2176 FAD linked oxidase domain-containing protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal YP_004505506.1 manually curated; TIGRFAM: Phenylacetic acid degradation-related protein; KEGG: spe:Spro_2177 thioesterase superfamily protein; PFAM: Thioesterase superfamily YP_004505507.1 KEGG: spe:Spro_2178 hypothetical protein YP_004505508.1 KEGG: spe:Spro_2179 iron-sulfur cluster assembly scaffold protein; TIGRFAM: SUF system FeS cluster assembly, SufA scaffold; FeS cluster insertion; PFAM: FeS cluster biogenesis YP_004505509.1 manually curated; TIGRFAM: SUF system FeS cluster assembly, SufB; KEGG: spe:Spro_2180 cysteine desulfurase activator complex subunit SufB; PFAM: SUF system FeS cluster assembly, SufBD YP_004505510.1 TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter-like; KEGG: spe:Spro_2181 cysteine desulfurase ATPase; SMART: ATPase, AAA+ type, core YP_004505511.1 KEGG: spe:Spro_2182 FeS assembly protein SufD; TIGRFAM: SUF system FeS cluster assembly, SufD; PFAM: SUF system FeS cluster assembly, SufBD YP_004505512.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; TIGRFAM: Cysteine desulfurase, SufS; HAMAP: Cysteine desulfurase; KEGG: spe:Spro_2183 SufS subfamily cysteine desulfurase YP_004505513.1 KEGG: spe:Spro_2184 cysteine desufuration protein SufE; HAMAP: Cysteine desulfuration protein sufE; PFAM: Fe-S metabolism associated SufE YP_004505514.1 PFAM: YkuD domain; KEGG: spe:Spro_2185 ErfK/YbiS/YcfS/YnhG family protein YP_004505515.1 PFAM: LPP motif; KEGG: pao:Pat9b_1673 LPP repeat-containing protein YP_004505516.1 TIGRFAM: Pyruvate kinase; KEGG: spe:Spro_2187 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta YP_004505517.1 PFAM: Cupin 2, conserved barrel; KEGG: spe:Spro_2188 cupin 2 domain-containing protein YP_004505518.1 TIGRFAM: Multi antimicrobial extrusion protein MatE; HAMAP: Multidrug resistance protein mdtK; KEGG: spe:Spro_2189 multidrug efflux protein; PFAM: Multi antimicrobial extrusion protein MatE YP_004505519.1 TIGRFAM: Lumazine-binding protein; KEGG: spe:Spro_2190 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein YP_004505520.1 KEGG: spe:Spro_2191 hypothetical protein YP_004505521.1 KEGG: spe:Spro_2192 cyclopropane fatty acyl phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase YP_004505522.1 KEGG: spe:Spro_2193 inner membrane transport protein YdhC; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004505523.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_2194 DNA-binding transcriptional regulator YP_004505524.1 HAMAP: HTH-type transcriptional repressor purR; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; KEGG: spe:Spro_2195 DNA-binding transcriptional repressor PurR; SMART: HTH transcriptional regulator, LacI YP_004505525.1 PFAM: NLP/P60; KEGG: spe:Spro_2197 NLP/P60 protein YP_004505526.1 KEGG: spe:Spro_2198 hypothetical protein; TIGRFAM: Glutaredoxin-related protein; PFAM: Glutaredoxin YP_004505527.1 SMART: Exonuclease; TIGRFAM: Ribonuclease T; KEGG: spe:Spro_2199 ribonuclease T; HAMAP: Ribonuclease T; PFAM: Exonuclease, RNase T/DNA polymerase III YP_004505528.1 TIGRFAM: Glyoxalase I; KEGG: spe:Spro_2200 lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004505529.1 PFAM: NUDIX hydrolase domain; TIGRFAM: Isopentenyl-diphosphate delta-isomerase, type 1; HAMAP: Isopentenyl-diphosphate Delta-isomerase; KEGG: spe:Spro_2201 isopentenyl-diphosphate delta-isomerase, type 1 YP_004505530.1 KEGG: spe:Spro_2202 N-ethylmaleimide reductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004505531.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: spe:Spro_2203 TetR family transcriptional regulator YP_004505532.1 PFAM: Protein of unknown function DUF1705; Sulfatase; KEGG: spe:Spro_2204 cell division protein YP_004505533.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: spe:Spro_2205 NAD-dependent epimerase/dehydratase YP_004505534.1 KEGG: spe:Spro_2206 LysR family transcriptional regulator; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR YP_004505535.1 PFAM: Protein of unknown function DUF1289; KEGG: spe:Spro_2207 hypothetical protein YP_004505536.1 PFAM: Aldo/keto reductase; KEGG: spe:Spro_2208 aldo/keto reductase YP_004505537.1 KEGG: spe:Spro_2209 triacylglycerol lipase; PFAM: Lipase, class 3; Haemolysin-type calcium-binding region YP_004505538.1 KEGG: spe:Spro_2210 superoxide dismutase; PFAM: Superoxide dismutase, copper/zinc binding YP_004505539.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: spe:Spro_2211 fusaric acid resistance protein region YP_004505540.1 PFAM: Secretion protein HlyD; KEGG: spe:Spro_2212 secretion protein HlyD family protein YP_004505541.1 KEGG: spe:Spro_2213 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF1656 YP_004505542.1 HAMAP: Transcriptional regulator slyA; PFAM: HTH transcriptional regulator, MarR; KEGG: spe:Spro_2214 transcriptional regulator SlyA; SMART: HTH transcriptional regulator, MarR YP_004505543.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: spe:Spro_2215 17 kDa surface antigen YP_004505544.1 KEGG: spe:Spro_2216 anhydro-N-acetylmuramic acid kinase; HAMAP: Anhydro-N-acetylmuramic acid kinase; PFAM: Anhydro-N-acetylmuramic acid kinase YP_004505545.1 PFAM: Protein of unknown function DUF2091, periplasmic; KEGG: spe:Spro_2217 lipoprotein YP_004505546.1 PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal; TIGRFAM: Pyridoxamine 5'-phosphate oxidase; HAMAP: Pyridoxamine 5'-phosphate oxidase; KEGG: spe:Spro_2218 pyridoxamine 5'-phosphate oxidase YP_004505547.1 KEGG: spe:Spro_2219 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; HAMAP: Tyrosyl-tRNA synthetase; SMART: RNA-binding S4 YP_004505548.1 PFAM: Carbohydrate/purine kinase; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase; HAMAP: Pyridoxamine kinase; KEGG: spe:Spro_2220 pyridoxamine kinase YP_004505549.1 PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: spe:Spro_2221 glutathionine S-transferase YP_004505550.1 TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: spe:Spro_2222 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase YP_004505551.1 KEGG: spe:Spro_2223 hypothetical protein YP_004505552.1 KEGG: spe:Spro_2224 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region YP_004505553.1 KEGG: spe:Spro_2225 hypothetical protein YP_004505554.1 KEGG: rah:Rahaq_2762 hypothetical protein YP_004505555.1 KEGG: esa:ESA_pESA3p05455 hypothetical protein YP_004505556.1 KEGG: atu:Atu0742 hypothetical protein YP_004505557.1 PFAM: Endoribonuclease L-PSP; KEGG: spe:Spro_2226 endoribonuclease L-PSP YP_004505558.1 PFAM: Aminoglycoside/hydroxyurea antibiotic resistance kinase; KEGG: spe:Spro_2227 aminoglycoside/hydroxyurea antibiotic resistance kinase YP_004505559.1 PFAM: Cupin 2, conserved barrel; KEGG: spe:Spro_2228 cupin 2 domain-containing protein YP_004505560.1 PFAM: MEKHLA; KEGG: spe:Spro_2229 MEKHLA domain-containing protein YP_004505561.1 KEGG: spe:Spro_2230 benzoate transporter; TIGRFAM: Benzoate membrane transport protein; PFAM: Benzoate membrane transport protein YP_004505562.1 KEGG: spe:Spro_2231 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3 YP_004505563.1 KEGG: spe:Spro_2232 prolyl oligopeptidase YP_004505564.1 KEGG: spe:Spro_2233 tripeptide transporter permease; TIGRFAM: Amino acid/peptide transporter; PFAM: Oligopeptide transporter YP_004505565.1 KEGG: plu:plu2272 hypothetical protein; PFAM: Glycoside hydrolase, family 30 YP_004505566.1 KEGG: kva:Kvar_0588 sugar (glycoside-pentoside-hexuronide) transporter; TIGRFAM: Sodium:galactoside symporter; PFAM: Major facilitator superfamily MFS-1 YP_004505567.1 KEGG: kva:Kvar_0587 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004505568.1 KEGG: kva:Kvar_0587 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004505569.1 KEGG: kva:Kvar_0588 sugar (glycoside-pentoside-hexuronide) transporter; TIGRFAM: Sodium:galactoside symporter; PFAM: Major facilitator superfamily MFS-1 YP_004505570.1 KEGG: mrb:Mrub_0289 xylan 1,4-beta-xylosidase; PFAM: Glycoside hydrolase, family 43 YP_004505571.1 SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; TIGRFAM: Endonuclease III/Nth; KEGG: spe:Spro_2234 endonuclease III; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif YP_004505572.1 TIGRFAM: Electron transport complex, RnfE; HAMAP: Electron transport complex protein rnfE; KEGG: spe:Spro_2235 electron transport complex RsxE subunit; PFAM: Electron transport complex, Rnf/Nqr YP_004505573.1 TIGRFAM: Electron transport complex, RnfG; HAMAP: Electron transport complex protein rnfG; KEGG: spe:Spro_2236 electron transport complex protein RnfG; PFAM: FMN-binding YP_004505574.1 TIGRFAM: Electron transport complex, RnfD; HAMAP: Electron transport complex protein rnfD; KEGG: spe:Spro_2237 electron transport complex protein RnfD; PFAM: NADH-quinone reductase NQR2/RnfD YP_004505575.1 KEGG: spe:Spro_2238 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004505576.1 TIGRFAM: Electron transport complex, RnfC; HAMAP: Electron transport complex protein rnfC; KEGG: spe:Spro_2239 RnfABCDGE type electron transport complex subunit C; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_004505577.1 TIGRFAM: Electron transport complex, RnfB; HAMAP: Electron transport complex, RnfB, subgroup; KEGG: spe:Spro_2240 electron transport complex protein RnfB; PFAM: Fe-S cluster; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_004505578.1 KEGG: spe:Spro_2241 RnfABCDGE type electron transport complex subunit A; TIGRFAM: Electron transport complex, RnfA; PFAM: Electron transport complex, Rnf/Nqr YP_004505579.1 PFAM: Protein of unknown function DUF2569; KEGG: spe:Spro_2242 hypothetical protein YP_004505580.1 HAMAP: L-arabinose isomerase; KEGG: spe:Spro_2243 L-arabinose isomerase; PFAM: L-arabinose isomerase YP_004505581.1 PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; TIGRFAM: L-ribulokinase; HAMAP: L-ribulokinase; KEGG: spe:Spro_2244 ribulokinase YP_004505582.1 PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: spe:Spro_2245 monosaccharide-transporting ATPase YP_004505583.1 PFAM: ABC transporter-like; KEGG: spe:Spro_2246 L-arabinose transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004505584.1 PFAM: Bacterial inner-membrane translocator; KEGG: spe:Spro_2247 L-arabinose transporter permease YP_004505585.1 KEGG: spe:Spro_2248 DNA-binding transcriptional regulator AraC; PFAM: AraC protein, arabinose-binding/dimerisation; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004505586.1 KEGG: ami:Amir_3801 hypothetical protein YP_004505587.1 PFAM: Methyltransferase type 11; KEGG: plu:plu3986 hypothetical protein YP_004505588.1 PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; TIGRFAM: Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; KEGG: brh:RBRH_01161 1-deoxy-D-xylulose 5-phosphate synthase YP_004505589.1 PFAM: NUDIX hydrolase domain; TIGRFAM: Isopentenyl-diphosphate delta-isomerase, type 1; HAMAP: Isopentenyl-diphosphate Delta-isomerase; KEGG: spe:Spro_2201 isopentenyl-diphosphate delta-isomerase, type 1 YP_004505590.1 PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: spe:Spro_2249 oxidoreductase YP_004505591.1 KEGG: spe:Spro_2250 hypothetical protein YP_004505592.1 PFAM: Adenosine/AMP deaminase; TIGRFAM: Adenosine deaminase; HAMAP: Adenosine deaminase; KEGG: spe:Spro_2251 adenosine deaminase YP_004505593.1 KEGG: spe:Spro_2252 serine protease YP_004505594.1 PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; KEGG: spe:Spro_2253 PTS IIA-like nitrogen-regulatory protein PtsN YP_004505595.1 KEGG: spe:Spro_2254 hypothetical protein YP_004505596.1 TIGRFAM: Ketose-bisphosphate aldolase, class-II; KEGG: spe:Spro_2255 ketose-bisphosphate aldolase; PFAM: Ketose-bisphosphate aldolase, class-II YP_004505597.1 KEGG: spe:Spro_2256 PTS system ascorbate-specific transporter subunit IIC YP_004505598.1 PFAM: Phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: spe:Spro_2257 phosphotransferase system lactose/cellobiose-specific IIB subunit YP_004505599.1 KEGG: spe:Spro_2258 phosphofructokinase; PFAM: Phosphofructokinase YP_004505600.1 KEGG: spe:Spro_2259 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004505601.1 KEGG: spe:Spro_2260 NUDIX hydrolase; TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase domain YP_004505602.1 KEGG: spe:Spro_2261 hypothetical protein YP_004505603.1 KEGG: spe:Spro_2262 aminotransferase class I and II; PFAM: Aminotransferase, class I/II YP_004505604.1 TIGRFAM: PTS system, maltose/glucose-specific IIBC component; Phosphotransferase system, maltose/glucose-specific IIC component; Phosphotransferase system, glucose-like IIB component; KEGG: yen:YE2011 bifunctional PTS system maltose and glucose-specific transporter subunits IICB; PFAM: Phosphotransferase system, EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_004505605.1 KEGG: spe:Spro_2271 DNA-binding transcriptional repressor MalI; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004505606.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_2272 LysR family transcriptional regulator YP_004505607.1 KEGG: spe:Spro_2273 beta-lactamase; PFAM: Beta-lactamase-related YP_004505608.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_2274 LysR family transcriptional regulator YP_004505609.1 PFAM: Beta-lactamase-related; KEGG: spe:Spro_2275 beta-lactamase YP_004505610.1 PFAM: Protein of unknown function DUF945, bacterial; KEGG: spe:Spro_2276 hypothetical protein YP_004505611.1 TIGRFAM: Mannose-6-phosphate isomerase, type I; KEGG: spe:Spro_2277 mannose-6-phosphate isomerase, class I; PFAM: Mannose-6-phosphate isomerase, type I YP_004505612.1 KEGG: spe:Spro_2278 hypothetical protein YP_004505613.1 PFAM: Fumarate lyase; Fumarase C, C-terminal; TIGRFAM: Fumarate hydratase, class II; HAMAP: Fumarate hydratase class II; KEGG: spe:Spro_2279 fumarate hydratase YP_004505614.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: gdi:GDI_2772 alkyl hydroperoxide reductase YP_004505615.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bgf:BC1003_1327 LysR family transcriptional regulator YP_004505616.1 KEGG: rhi:NGR_c35550 transcriptional regulator YP_004505617.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll3207 hypothetical protein YP_004505618.1 TIGRFAM: DNA replication terminus site-binding protein; HAMAP: DNA replication terminus site-binding protein; KEGG: spe:Spro_2280 DNA replication terminus site-binding protein; PFAM: DNA replication terminus site-binding protein YP_004505619.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_2281 major facilitator transporter YP_004505620.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_2282 LysR family transcriptional regulator YP_004505621.1 KEGG: spe:Spro_2283 ROK family protein; PFAM: ROK YP_004505622.1 TIGRFAM: Dethiobiotin synthase; HAMAP: Dethiobiotin synthase; KEGG: spe:Spro_2284 dethiobiotin synthase; PFAM: Cobyrinic acid a,c-diamide synthase YP_004505623.1 KEGG: spe:Spro_2285 voltage-gated ClC-type chloride channel ClcB; HAMAP: Voltage-gated ClC-type chloride channel clcB; PFAM: Chloride channel, voltage gated YP_004505624.1 KEGG: spe:Spro_2286 EmrB/QacA family drug resistance transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004505625.1 PFAM: Protein of unknown function DUF1161; KEGG: spe:Spro_2287 hypothetical protein YP_004505626.1 KEGG: spe:Spro_2288 hypothetical protein; HAMAP: Protein of unknown function DUF1283; PFAM: Protein of unknown function DUF1283 YP_004505627.1 KEGG: spe:Spro_2289 hypothetical protein; HAMAP: Uncharacterised protein family UPF0060; PFAM: Uncharacterised protein family UPF0060 YP_004505628.1 KEGG: spe:Spro_2290 3-hydroxy acid dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004505629.1 KEGG: spe:Spro_2291 GCN5-related N-acetyltransferase YP_004505630.1 PFAM: Aldo/keto reductase; KEGG: rah:Rahaq_2226 aldo/keto reductase YP_004505631.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_2292 major facilitator transporter YP_004505632.1 PFAM: ABC transporter-like; KEGG: spe:Spro_2293 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004505633.1 PFAM: Carbohydrate/purine kinase; KEGG: spe:Spro_2294 ribokinase-like domain-containing protein YP_004505634.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2295 binding-protein-dependent transport systems inner membrane component YP_004505635.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2296 binding-protein-dependent transport systems inner membrane component YP_004505636.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: spe:Spro_2297 extracellular solute-binding protein YP_004505637.1 PFAM: ROK; KEGG: spe:Spro_2298 ROK family protein YP_004505639.1 KEGG: ypb:YPTS_3504 fibronectin type III domain-containing protein; PFAM: Chitin-binding, domain 3; Fibronectin, type III; Carbohydrate-binding domain, family 5/12; SMART: Fibronectin, type III; Carbohydrate-binding domain, family 5/12 YP_004505640.1 KEGG: pst:PSPTO_0400 chitinase; PFAM: Glycoside hydrolase, family 18, catalytic domain; Fibronectin, type III; Carbohydrate-binding domain, family 5/12; SMART: Fibronectin, type III; Chitinase II YP_004505641.1 TIGRFAM: Guanine deaminase; KEGG: spe:Spro_2299 guanine deaminase; PFAM: Amidohydrolase 1 YP_004505642.1 TIGRFAM: Xanthine dehydrogenase, small subunit; KEGG: spe:Spro_2300 xanthine dehydrogenase small subunit; PFAM: Molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding; Ferredoxin; CO dehydrogenase flavoprotein, C-terminal YP_004505643.1 TIGRFAM: Xanthine dehydrogenase, molybdopterin binding subunit; KEGG: spe:Spro_2301 xanthine dehydrogenase molybdopterin binding subunit; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead YP_004505644.1 KEGG: spe:Spro_2302 xanthine dehydrogenase accessory protein XdhC; TIGRFAM: Xanthine dehydrogenase accessory protein XdhC; PFAM: XdhC- CoxI YP_004505645.1 KEGG: eta:ETA_14010 6-phospho-alpha-glucosidase; PFAM: Glycoside hydrolase, family 4 YP_004505646.1 TIGRFAM: Phosphotransferase system, alpha-glucoside-specific IIBC component; Phosphotransferase system, maltose/glucose-specific IIC component; Phosphotransferase system, glucose-like IIB component; KEGG: kva:Kvar_0018 PTS system, alpha-glucoside-specific IIBC subunit; PFAM: Phosphotransferase system, EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_004505647.1 KEGG: aha:AHA_0117 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004505648.1 PFAM: Glycosyl hydrolase, family 13, catalytic region; KEGG: eta:ETA_16540 sucrose isomerase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region YP_004505649.1 manually curated; KEGG: axy:AXYL_03557 hypothetical protein YP_004505650.1 KEGG: spe:Spro_2306 peptidyl-dipeptidase DCP; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F YP_004505651.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_2307 major facilitator transporter YP_004505652.1 KEGG: spe:Spro_2308 N-carbamoylsarcosine amidase; PFAM: Isochorismatase-like YP_004505653.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: spe:Spro_2309 Asp/Glu racemase YP_004505654.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: spe:Spro_2310 alpha/beta hydrolase fold domain-containing protein YP_004505655.1 KEGG: spe:Spro_2311 monooxygenase FAD-binding; PFAM: Amine oxidase YP_004505656.1 KEGG: spe:Spro_2312 hypothetical protein YP_004505657.1 KEGG: spe:Spro_2313 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004505658.1 KEGG: spe:Spro_2314 2Fe-2S iron-sulfur cluster binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin YP_004505659.1 KEGG: spe:Spro_2315 aldehyde oxidase and xanthine dehydrogenas; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Cytochrome c, class I YP_004505660.1 PFAM: Secretion protein HlyD; Biotin/lipoyl attachment; KEGG: spe:Spro_2316 secretion protein HlyD family protein YP_004505661.1 PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane region; KEGG: spe:Spro_2317 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004505662.1 PFAM: Monooxygenase, FAD-binding; KEGG: spe:Spro_2318 monooxygenase FAD-binding YP_004505663.1 PFAM: Peptidase S58, DmpA; KEGG: rah:Rahaq_2425 peptidase S58 DmpA YP_004505664.1 PFAM: Protein of unknown function DUF1003; KEGG: pfl:PFL_4534 hypothetical protein YP_004505665.1 KEGG: spe:Spro_2319 aldehyde oxidase and xanthine dehydrogenas; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding YP_004505666.1 KEGG: spe:Spro_2320 2Fe-2S iron-sulfur cluster binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin YP_004505667.1 KEGG: spe:Spro_2321 gluconate 2-dehydrogenase; PFAM: Cytochrome c, class I YP_004505668.1 TIGRFAM: Phosphotransferase system, beta-glucoside-specific IIABC component; Phosphotransferase system, sugar-specific permease EIIA 1 domain; KEGG: spe:Spro_2323 PTS system beta-glucoside-specific transporter subunit IIABC; PFAM: Phosphotransferase system, sugar-specific permease EIIA 1 domain; Phosphotransferase system, EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_004505669.1 KEGG: spe:Spro_2324 glycoside hydrolase; PFAM: Glycoside hydrolase, family 1 YP_004505670.1 PFAM: CAT RNA-binding region; PRD; KEGG: spe:Spro_2325 transcriptional antiterminator, BglG YP_004505671.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_2326 LysR family transcriptional regulator YP_004505672.1 PFAM: Chromate transporter region; KEGG: spe:Spro_2327 chromate transporter YP_004505673.1 PFAM: Chromate transporter region; KEGG: spe:Spro_2328 chromate transporter YP_004505674.1 PFAM: Metalloprotease inhibitor I38; KEGG: spe:Spro_2329 metalloprotease inhibitor I38 YP_004505675.1 KEGG: spe:Spro_2330 lipoprotein YP_004505676.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: ebi:EbC_42330 phytanoyl-CoA dioxygenase YP_004505677.1 KEGG: avn:Avin_26200 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004505678.1 KEGG: avn:Avin_26190 LacI regulatory protein; PFAM: HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004505679.1 KEGG: epy:EpC_22790 hypothetical protein YP_004505680.1 PFAM: Peptidase C39, bacteriocin processing; KEGG: eay:EAM_2822 bacteriocin processing peptidase YP_004505681.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: spe:Spro_2336 hypothetical protein YP_004505682.1 KEGG: spe:Spro_2337 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004505683.1 KEGG: spe:Spro_2338 hypothetical protein YP_004505684.1 KEGG: sna:Snas_2099 hypothetical protein YP_004505685.1 PFAM: NIPSNAP; KEGG: pmu:PM1467 hypothetical protein YP_004505686.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_2339 major facilitator transporter YP_004505687.1 KEGG: spe:Spro_2340 hypothetical protein YP_004505688.1 TIGRFAM: HAD-superfamily hydrolase, superfamily IIB, YedP; HAD-superfamily hydrolase, subfamily IIB; KEGG: spe:Spro_2341 mannosyl-3-phosphoglycerate phosphatase; PFAM: HAD superfamily hydrolase-like, type 3 YP_004505689.1 KEGG: spe:Spro_2342 hypothetical protein YP_004505690.1 KEGG: spe:Spro_2343 hypothetical protein YP_004505691.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_2344 GCN5-related N-acetyltransferase YP_004505692.1 KEGG: spe:Spro_2345 RpiR family transcriptional regulator YP_004505693.1 PFAM: Peptidase M15D, vanX D-ala-D-ala dipeptidase; KEGG: spe:Spro_2346 D-alanyl-D-alanine dipeptidase YP_004505694.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: spe:Spro_2347 extracellular solute-binding protein YP_004505695.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2348 binding-protein-dependent transport systems inner membrane component YP_004505696.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2349 ATP-dependent peptide transporter membrane subunit YP_004505697.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: spe:Spro_2350 oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_004505698.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: spe:Spro_2351 oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_004505699.1 KEGG: spe:Spro_2352 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase; PFAM: Bacterial transferase hexapeptide repeat YP_004505700.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_2353 major facilitator transporter YP_004505701.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_2354 LysR family transcriptional regulator YP_004505702.1 KEGG: spe:Spro_2355 hypothetical protein YP_004505703.1 TIGRFAM: Penicillin-binding protein 2; KEGG: spe:Spro_2356 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain YP_004505704.1 KEGG: spe:Spro_2357 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain YP_004505705.1 KEGG: spe:Spro_2359 osmotically inducible lipoprotein YP_004505706.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rah:Rahaq_3469 GCN5-related N-acetyltransferase YP_004505707.1 PFAM: Protein of unknown function DUF2592; KEGG: spe:Spro_2360 hypothetical protein YP_004505708.1 PFAM: ABC transporter-like; KEGG: spe:Spro_2361 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004505709.1 KEGG: spe:Spro_2362 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004505710.1 KEGG: spe:Spro_2363 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004505711.1 TIGRFAM: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase; KEGG: spe:Spro_2364 xenobiotic compound monooxygenase subunit A YP_004505712.1 PFAM: MmgE/PrpD; KEGG: spe:Spro_2365 MmgE/PrpD family protein YP_004505713.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bid:Bind_1454 LysR family transcriptional regulator YP_004505714.1 PFAM: Beta-lactamase-related; KEGG: reh:H16_A1195 beta-lactamase YP_004505715.1 PFAM: Major facilitator superfamily MFS-1; KEGG: avn:Avin_35860 major facilitator superfamily transporter YP_004505716.1 KEGG: spe:Spro_0530 entry exclusion protein 2 YP_004505717.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_2367 major facilitator transporter YP_004505718.1 PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: amr:AM1_4848 riboflavin biosynthesis protein RibD domain-containing protein YP_004505719.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: spe:Spro_2368 glyoxalase/bleomycin resistance protein/dioxygenase YP_004505720.1 KEGG: spe:Spro_2369 hypothetical protein YP_004505721.1 KEGG: spe:Spro_2370 hypothetical protein YP_004505722.1 KEGG: spe:Spro_2371 hypothetical protein; PFAM: Alcohol dehydrogenase, iron-type YP_004505723.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: spe:Spro_2372 NAD-dependent epimerase/dehydratase YP_004505724.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: spe:Spro_2373 TetR family transcriptional regulator YP_004505725.1 PFAM: Pirin, N-terminal; KEGG: dze:Dd1591_0941 pirin domain-containing protein YP_004505726.1 PFAM: DoxX; KEGG: rec:RHECIAT_CH0000673 hypothetical protein YP_004505727.1 KEGG: abb:ABBFA_001781 FMN-dependent NADH-azoreductase; HAMAP: FMN-dependent NADH-azoreductase; PFAM: Flavodoxin-like fold YP_004505728.1 PFAM: Helix-turn-helix, HxlR type; KEGG: axy:AXYL_02294 HxlR-like helix-turn-helix family protein 1 YP_004505729.1 KEGG: rah:Rahaq_2721 hypothetical protein YP_004505730.1 KEGG: vpe:Varpa_4097 alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004505731.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rah:Rahaq_2723 LysR family transcriptional regulator YP_004505732.1 KEGG: rah:Rahaq_2719 hypothetical protein YP_004505733.1 PFAM: ABC transporter-like; Transport-associated OB, type 1; KEGG: ypb:YPTS_3224 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004505734.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: yps:YPTB3101 ABC type periplasmic sugar(maltose)-binding protein YP_004505735.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ypb:YPTS_3222 binding-protein-dependent transport systems inner membrane component YP_004505736.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ypb:YPTS_3221 binding-protein-dependent transport systems inner membrane component YP_004505737.1 KEGG: ypb:YPTS_3220 glycosyl hydrolase 53 protein; PFAM: Glycosyl hydrolase 53 YP_004505738.1 KEGG: ypb:YPTS_3219 glycoside hydrolase 42 protein; PFAM: Glycoside hydrolase, family 42, N-terminal; Beta-galactosidase trimerisation; Beta-galactosidase C-terminal YP_004505739.1 PFAM: Phosphotransferase system EIIB/cysteine, phosphorylation site; KEGG: ypb:YPTS_3218 PTS system transporter subunit EIIB YP_004505740.1 KEGG: enc:ECL_02641 maltoporin 1; HAMAP: Maltoporin; PFAM: Porin, LamB type YP_004505741.1 KEGG: dze:Dd1591_1283 lac repressor; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004505742.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: psp:PSPPH_2305 TetR family transcriptional regulator YP_004505743.1 PFAM: Major facilitator superfamily MFS-1; KEGG: psp:PSPPH_2306 major facilitator family transporter YP_004505744.1 KEGG: spe:Spro_2383 CopG/DNA-binding domain-containing protein YP_004505745.1 PFAM: Protein of unknown function DUF156; KEGG: enc:ECL_A112 nickel-resistant pritein NirB YP_004505746.1 PFAM: Nickel/cobalt transporter, high-affinity; KEGG: enc:ECL_A111 nickel-resistant membrane protein-like protein NcrC YP_004505747.1 PFAM: CopG-like DNA-binding; KEGG: spe:Spro_2383 CopG/DNA-binding domain-containing protein YP_004505748.1 KEGG: spe:Spro_2384 spermidine synthase-like protein YP_004505749.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: spe:Spro_2385 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_004505750.1 TIGRFAM: Uncharacterised protein family UPF0114, bacteria; HAMAP: Uncharacterised protein family UPF0114, gammaproteobacteria; KEGG: spe:Spro_2386 hypothetical protein; PFAM: Uncharacterised protein family UPF0114, prokaryotic YP_004505751.1 TIGRFAM: SelT/selW/selH selenoprotein; KEGG: ebi:EbC_37660 selenoprotein YP_004505752.1 KEGG: spe:Spro_2392 PAS modulated sigma54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004505753.1 KEGG: spe:Spro_2393 inositol 2-dehydrogenase; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal YP_004505754.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: spe:Spro_2394 xylose isomerase domain-containing protein YP_004505755.1 PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: spe:Spro_2395 periplasmic binding protein/LacI transcriptional regulator YP_004505756.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pva:Pvag_3062 MFS family transporter YP_004505757.1 KEGG: yen:YE4033 LysR family transcriptional regulator; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR YP_004505758.1 KEGG: spe:Spro_2396 dimethylargininase; PFAM: Amidinotransferase YP_004505759.1 KEGG: spe:Spro_2397 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004505760.1 KEGG: spe:Spro_2398 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004505761.1 KEGG: spe:Spro_2399 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004505762.1 KEGG: spe:Spro_2400 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004505763.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: spe:Spro_2401 succinylglutamate desuccinylase/aspartoacylase YP_004505764.1 PFAM: Filamentation induced by cAMP/death on curing, related YP_004505766.1 PFAM: ABC transporter-like; KEGG: spe:Spro_2402 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004505768.1 KEGG: pam:PANA_0927 hypothetical protein YP_004505769.1 PFAM: Uncharacterised conserved protein UCP012641; KEGG: mab:MAB_2856c hypothetical protein YP_004505770.1 PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; KEGG: esa:ESA_01682 hypothetical protein YP_004505771.1 PFAM: Aldehyde dehydrogenase; KEGG: spe:Spro_2410 aldehyde dehydrogenase YP_004505772.1 KEGG: spe:Spro_2411 fis family GAF modulated sigma54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004505773.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: swi:Swit_0153 TetR family transcriptional regulator YP_004505774.1 PFAM: Alcohol dehydrogenase, zinc-binding; KEGG: bur:Bcep18194_B1574 zinc-containing alcohol dehydrogenase superfamily protein YP_004505775.1 KEGG: spe:Spro_2412 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004505776.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: eca:ECA3634 LysR family transcriptional regulator YP_004505777.1 manually curated YP_004505778.1 KEGG: acd:AOLE_12945 MFS family transporter; manually curated; PFAM: Major facilitator superfamily MFS-1 YP_004505779.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold-4; KEGG: spe:Spro_2414 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate cyclase, predicted; Diguanylate phosphodiesterase, predicted YP_004505780.1 TIGRFAM: PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate related; KEGG: spe:Spro_2415 pyrrolo-quinoline quinone; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal YP_004505781.1 PFAM: Peptidase S33, tripeptidyl-peptidase C-terminal; Alpha/beta hydrolase fold-1; KEGG: spe:Spro_2416 TAP domain-containing protein YP_004505782.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_2417 LysR family transcriptional regulator YP_004505783.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bgf:BC1003_5503 short-chain dehydrogenase/reductase SDR YP_004505784.1 KEGG: spe:Spro_2418 pyridoxal-dependent decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase YP_004505785.1 TIGRFAM: Diaminobutyrate-2-oxoglutarate transaminase; KEGG: pct:PC1_2060 2,4-diaminobutyrate 4-transaminase; PFAM: Aminotransferase class-III YP_004505786.1 KEGG: mxa:MXAN_4523 lipoprotein YP_004505790.1 KEGG: hoh:Hoch_6268 hypotheticalprotein; TIGRFAM: RHS repeat-associated core domain; YD repeat; PFAM: YD repeat YP_004505791.1 KEGG: spe:Spro_2447 RNase H YP_004505792.1 PFAM: MltA-interacting MipA; KEGG: spe:Spro_2730 MltA-interacting MipA family protein YP_004505793.1 KEGG: rah:Rahaq_0871 outer membrane protein assembly complex, YaeT protein; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number YP_004505794.1 KEGG: rah:Rahaq_0281 hypothetical protein YP_004505795.1 KEGG: ent:Ent638_0039 LacI family transcription regulator; PFAM: HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004505796.1 PFAM: Phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: ent:Ent638_0038 phosphotransferase system, lactose/cellobiose-specific IIB subunit YP_004505797.1 TIGRFAM: Phosphotransferase system, lactose/cellobiose IIC component; KEGG: enc:ECL_00049 PTS system lactose/cellobiose family IIC subunit; PFAM: Phosphotransferase system, EIIC YP_004505798.1 KEGG: pao:Pat9b_4386 6-phospho-beta-glucosidase; PFAM: Glycoside hydrolase, family 1 YP_004505799.1 PFAM: Phosphotransferase system, lactose/cellobiose-specific IIA subunit; KEGG: yen:YE1291 PTS system protein YP_004505800.1 PFAM: Porin, LamB type; KEGG: cro:ROD_41141 maltoporin YP_004505801.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ctu:Ctu_1p00190 hypothetical protein YP_004505802.1 manually curated; KEGG: esa:ESA_pESA3p05449 hypothetical protein YP_004505803.1 KEGG: enc:ECL_01758 acridine efflux pump; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004505804.1 KEGG: sml:Smlt4121 dihydrolipoamide acetyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004505805.1 TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type; KEGG: bgl:bglu_1g10580 2-oxoacid dehydrogenase subunit E1; PFAM: Transketolase, N-terminal YP_004505806.1 KEGG: bcj:BCAM1943 MarR family regulatory protein; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004505807.1 PFAM: FAD dependent oxidoreductase; KEGG: spe:Spro_2449 FAD dependent oxidoreductase YP_004505808.1 PFAM: Helix-turn-helix, HxlR type; KEGG: bpy:Bphyt_2048 transcriptional regulator, HxlR family YP_004505809.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bch:Bcen2424_3218 short-chain dehydrogenase/reductase SDR YP_004505810.1 PFAM: YCII-related; KEGG: pst:PSPTO_4066 hypothetical protein YP_004505811.1 PFAM: Helix-turn-helix, HxlR type; KEGG: ddd:Dda3937_01476 transcriptional regulator YP_004505812.1 PFAM: Male sterility, NAD-binding; KEGG: kvu:EIO_2869 oxidoreductase YtfG YP_004505813.1 manually curated; PFAM: HTH transcriptional regulator, MarR; KEGG: pwa:Pecwa_2559 MarR family transcriptional regulator; SMART: HTH transcriptional regulator, MarR YP_004505814.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: pct:PC1_2255 hypothetical protein YP_004505815.1 PFAM: Nitroreductase-like; KEGG: dac:Daci_3107 nitroreductase YP_004505816.1 PFAM: Integrase, catalytic core; KEGG: kpe:KPK_B0045 transposase YP_004505817.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: sro:Sros_3694 alpha/beta hydrolase fold protein YP_004505818.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: cko:CKO_00824 hypothetical protein YP_004505819.1 KEGG: cko:CKO_00825 hypothetical protein YP_004505820.1 PFAM: Amidohydrolase 2; KEGG: cai:Caci_6458 amidohydrolase 2 YP_004505821.1 PFAM: Methyltransferase type 11; KEGG: ent:Ent638_0824 methyltransferase type 11 YP_004505822.1 KEGG: spe:Spro_2452 NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region YP_004505823.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: psa:PST_1624 transcriptional regulator YP_004505824.1 KEGG: bxe:Bxe_B2110 NAD(P)H dehydrogenase (quinone); PFAM: Flavodoxin-like fold YP_004505825.1 PFAM: Flavodoxin-like fold; KEGG: bbe:BBR47_31250 hypothetical protein YP_004505826.1 PFAM: Helix-turn-helix, HxlR type; KEGG: acd:AOLE_01150 HxlR-like helix-turn-helix family protein YP_004505827.1 KEGG: spe:Spro_2471 MarR family transcriptional regulator; PFAM: GCN5-related N-acetyltransferase; HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004505828.1 PFAM: Major facilitator superfamily MFS-1; KEGG: bcm:Bcenmc03_4887 major facilitator transporter YP_004505829.1 KEGG: tau:Tola_1929 hypothetical protein YP_004505830.1 KEGG: psb:Psyr_3799 hypothetical protein YP_004505831.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: psb:Psyr_3801 regulatory protein, LysR:LysR, substrate-binding YP_004505832.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bph:Bphy_5765 LysR family transcriptional regulator YP_004505833.1 KEGG: spe:Spro_1853 hypothetical protein YP_004505835.1 PFAM: Peptidase M10, serralysin, C-terminal; Peptidase M10A/M12B, matrixin/adamalysin; Haemolysin-type calcium-binding region; KEGG: spe:Spro_0210 serralysin; SMART: Peptidase, metallopeptidases YP_004505836.1 PFAM: YheO-like; KEGG: pae:PA3864 transcriptional regulator of the dauBAR operon, DauR YP_004505837.1 KEGG: spe:Spro_2473 Glu/Leu/Phe/Val dehydrogenase; PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation region YP_004505838.1 KEGG: spe:Spro_2475 PfpI family intracellular peptidase; TIGRFAM: Peptidase C56, PfpI; PFAM: ThiJ/PfpI YP_004505839.1 PFAM: Protein of unknown function DUF1493; KEGG: spe:Spro_2476 hypothetical protein YP_004505840.1 KEGG: spe:Spro_2477 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004505841.1 KEGG: spe:Spro_2478 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004505842.1 KEGG: spe:Spro_2479 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004505843.1 KEGG: spe:Spro_2480 EmrB/QacA family drug resistance transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004505844.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: spe:Spro_2481 TetR family transcriptional regulator YP_004505845.1 TIGRFAM: L-asparaginase, type II; KEGG: kva:Kvar_3192 L-asparaginase, type II; PFAM: Asparaginase/glutaminase YP_004505846.1 KEGG: pfo:Pfl01_2316 benzoate membrane transport protein; TIGRFAM: Benzoate membrane transport protein; PFAM: Benzoate membrane transport protein YP_004505847.1 KEGG: pfo:Pfl01_2317 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR YP_004505848.1 KEGG: spe:Spro_2487 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004505849.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: spe:Spro_2488 hypothetical protein YP_004505850.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: psb:Psyr_3156 regulatory protein, LysR:LysR, substrate-binding YP_004505852.1 PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal; Acyl-CoA dehydrogenase, N-terminal; KEGG: pao:Pat9b_5473 acyl-CoA dehydrogenase type 2 domain-containing protein YP_004505853.1 PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal; Acyl-CoA dehydrogenase, N-terminal; KEGG: pao:Pat9b_5474 acyl-CoA dehydrogenase type 2 domain-containing protein YP_004505854.1 TIGRFAM: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase; KEGG: ebi:EbC_20780 monooxygenase, DszA family YP_004505855.1 PFAM: NLPA lipoprotein; KEGG: pao:Pat9b_5476 NlpA lipoprotein YP_004505856.1 PFAM: ABC transporter-like; NIL domain; KEGG: pao:Pat9b_5477 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004505857.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_2366 binding-protein-dependent transport systems inner membrane component YP_004505858.1 KEGG: ebi:EbC_20680 ABC-like transporter; TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulphonates; SMART: Extracellular solute-binding protein, family 3 YP_004505859.1 TIGRFAM: Cysteine desulfurase, SufS; KEGG: spe:Spro_2493 SufS subfamily cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004505860.1 KEGG: spe:Spro_2494 hypothetical protein YP_004505861.1 KEGG: spe:Spro_2495 serine O-acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat YP_004505862.1 SMART: Rhodanese-like; KEGG: spe:Spro_2496 rhodanese domain-containing protein YP_004505863.1 KEGG: spe:Spro_2497 NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region YP_004505864.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_2498 major facilitator transporter YP_004505865.1 PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: spe:Spro_2499 RpiR family transcriptional regulator YP_004505866.1 KEGG: spe:Spro_2500 glycoside hydrolase; PFAM: Glycoside hydrolase, family 1 YP_004505868.1 TIGRFAM: Protocatechuate 3,4-dioxygenase, beta subunit; KEGG: spe:Spro_2501 protocatechuate 3,4-dioxygenase subunit beta; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal YP_004505869.1 TIGRFAM: Protocatechuate 3,4-dioxygenase, alpha subunit; KEGG: spe:Spro_2502 protocatechuate 3,4-dioxygenase subunit alpha; PFAM: Intradiol ring-cleavage dioxygenase, C-terminal YP_004505870.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_2503 LysR family transcriptional regulator YP_004505871.1 TIGRFAM: 4-carboxymuconolactone decarboxylase; KEGG: spe:Spro_2504 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase YP_004505872.1 TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; KEGG: spe:Spro_2505 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: Fumarate lyase; Adenylosuccinate lyase, C-terminal YP_004505873.1 KEGG: spe:Spro_2506 4-hydroxybenzoate 3-monooxygenase; PFAM: Monooxygenase, FAD-binding YP_004505874.1 KEGG: spe:Spro_2507 benzoate transport; TIGRFAM: Benzoate transport; PFAM: Major facilitator superfamily MFS-1 YP_004505875.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_2512 major facilitator transporter YP_004505876.1 KEGG: bmn:BMA10247_A0893 shikimate 5-dehydrogenase; HAMAP: Shikimate dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_004505877.1 KEGG: pam:PANA_3342 VllY; PFAM: Xylose isomerase, TIM barrel domain; Glyoxalase/bleomycin resistance protein/dioxygenase YP_004505878.1 KEGG: spe:Spro_2519 glycosyltransferase YP_004505879.1 KEGG: spe:Spro_2520 L-lysine 6-monooxygenase (NADPH) YP_004505881.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: spe:Spro_2513 TetR family transcriptional regulator YP_004505882.1 TIGRFAM: Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR; PFAM: Transcriptional regulator IclR, C-terminal; Transcriptional regulator IclR, N-terminal; KEGG: spe:Spro_2514 IclR family transcriptional regulator; SMART: Transcriptional regulator IclR, N-terminal YP_004505883.1 PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; TIGRFAM: D-serine ammonia-lyase; HAMAP: D-serine dehydratase; KEGG: spe:Spro_2515 D-serine dehydratase YP_004505884.1 PFAM: Protein of unknown function DUF125, transmembrane; KEGG: esc:Entcl_2819 hypothetical protein YP_004505885.1 PFAM: 3-demethylubiquinone-9 3-O-methyltransferase; KEGG: spe:Spro_2516 3-demethylubiquinone-9 3-methyltransferase YP_004505886.1 PFAM: Protein of unknown function DUF1428; KEGG: spe:Spro_2517 hypothetical protein YP_004505887.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: spe:Spro_2518 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004505888.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sme:SMc01462 acetyltransferase YP_004505889.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: pfo:Pfl01_2337 binding-protein dependent transport system inner membrane protein YP_004505890.1 PFAM: ABC transporter-like; NIL domain; KEGG: ypb:YPTS_1446 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004505891.1 PFAM: NLPA lipoprotein; KEGG: yen:YE1466 hypothetical protein YP_004505892.1 KEGG: pct:PC1_2718 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal YP_004505893.1 KEGG: yen:YE2604 oxidoreductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region YP_004505894.1 PFAM: Carbohydrate/purine kinase; KEGG: pct:PC1_2720 PfkB domain protein YP_004505895.1 PFAM: Bacterial inner-membrane translocator; KEGG: yen:YE2606 sugar permease YP_004505896.1 PFAM: Bacterial inner-membrane translocator; KEGG: yen:YE2607 membrane permease YP_004505897.1 PFAM: ABC transporter-like; KEGG: yen:YE2608 sugar transport, ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004505898.1 PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: yen:YE2609 ABC transporter, substrate binding component YP_004505899.1 PFAM: Glycosyl hydrolase, family 13, catalytic region; KEGG: spe:Spro_2521 alpha amylase catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region YP_004505900.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: spe:Spro_2522 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004505901.1 KEGG: spe:Spro_2523 glycoside hydrolase; PFAM: Glycoside hydrolase, family 4 YP_004505902.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2524 binding-protein-dependent transport systems inner membrane component YP_004505903.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2525 binding-protein-dependent transport systems inner membrane component YP_004505904.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: spe:Spro_2526 extracellular solute-binding protein YP_004505905.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_2527 LysR family transcriptional regulator YP_004505906.1 PFAM: Phosphotransferase system EIIB/cysteine, phosphorylation site; KEGG: rah:Rahaq_2687 PTS system, glucose-specific IIABC component YP_004505908.1 PFAM: Mechanosensitive ion channel MscS; KEGG: spe:Spro_2528 mechanosensitive ion channel MscS YP_004505909.1 KEGG: spe:Spro_2529 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004505910.1 PFAM: Cupin 2, conserved barrel; KEGG: kpn:KPN_01138 hypothetical protein YP_004505911.1 KEGG: kva:Kvar_3242 AraC protein arabinose-binding/dimerization; PFAM: AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain YP_004505912.1 PFAM: Peptidase M24, structural domain; Creatinase; KEGG: spe:Spro_3031 peptidase M24 YP_004505913.1 KEGG: spe:Spro_2530 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004505916.1 PFAM: MgtE integral membrane region; Cystathionine beta-synthase, core; KEGG: spe:Spro_2531 MgtE integral membrane region YP_004505917.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: ent:Ent638_1483 extracellular solute-binding protein YP_004505918.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sro:Sros_8805 hypothetical protein YP_004505919.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rah:Rahaq_3119 LysR family transcriptional regulator YP_004505920.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: spe:Spro_2534 extracellular solute-binding protein YP_004505921.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2535 binding-protein-dependent transport systems inner membrane component YP_004505922.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: spe:Spro_2536 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004505923.1 KEGG: spe:Spro_2537 translation elongation factor G; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal YP_004505924.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: spe:Spro_2538 hypothetical protein YP_004505925.1 PFAM: Protein of unknown function DUF2239; KEGG: gdj:Gdia_2823 hypothetical protein YP_004505926.1 KEGG: vap:Vapar_2886 ArsR family transcriptional regulator YP_004505927.1 KEGG: vpe:Varpa_3121 transcriptional regulator AsnC family YP_004505928.1 KEGG: spe:Spro_2540 AraC family transcriptional regulator; PFAM: AraC protein, arabinose-binding/dimerisation; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004505929.1 KEGG: spe:Spro_2541 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004505930.1 KEGG: spe:Spro_2542 alpha/beta hydrolase domain-containing protein YP_004505931.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: spe:Spro_2543 alpha/beta hydrolase fold domain-containing protein YP_004505932.1 PFAM: Xylose isomerase, TIM barrel domain; AP endonuclease, family 2, C-terminal; KEGG: spe:Spro_2544 xylose isomerase domain-containing protein YP_004505933.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: spe:Spro_2545 TetR family transcriptional regulator YP_004505934.1 PFAM: Cupin 2, conserved barrel; KEGG: spe:Spro_2546 cupin 2 domain-containing protein YP_004505935.1 KEGG: spe:Spro_2547 K potassium transporter; HAMAP: Low affinity potassium transport system protein kup; PFAM: K+ potassium transporter YP_004505936.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_2548 LysR family transcriptional regulator YP_004505937.1 PFAM: Bacterial inner-membrane translocator; KEGG: spe:Spro_2549 inner-membrane translocator YP_004505938.1 PFAM: Bacterial inner-membrane translocator; KEGG: spe:Spro_2550 inner-membrane translocator YP_004505939.1 PFAM: ABC transporter-like; KEGG: spe:Spro_2551 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004505940.1 KEGG: spe:Spro_2552 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004505941.1 PFAM: Extracellular ligand-binding receptor; KEGG: spe:Spro_2553 extracellular ligand-binding receptor YP_004505942.1 KEGG: spe:Spro_2554 hypothetical protein YP_004505943.1 TIGRFAM: Amidase, hydantoinase/carbamoylase; KEGG: spe:Spro_2555 amidase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004505944.1 KEGG: spe:Spro_2556 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004505945.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: spe:Spro_2557 activator of HSP90 ATPase 1 family protein YP_004505946.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: spe:Spro_2558 Mg2 transporter protein CorA family protein YP_004505947.1 PFAM: Phosphate transporter; KEGG: spe:Spro_2559 phosphate transporter YP_004505948.1 KEGG: spe:Spro_2560 hypothetical protein; TIGRFAM: polyphosphate kinase 2; PFAM: Polyphosphate kinase 2 YP_004505949.1 PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; KEGG: spe:Spro_2561 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 YP_004505950.1 KEGG: spe:Spro_2562 luciferase; TIGRFAM: Luciferase oxidoreductase, group 1; PFAM: Luciferase-like, subgroup YP_004505951.1 KEGG: spe:Spro_2563 transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR YP_004505952.1 KEGG: spe:Spro_2564 hypothetical protein YP_004505953.1 PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: spe:Spro_2565 glutamine amidotransferase class-I YP_004505954.1 TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase; KEGG: spe:Spro_2566 pyridoxal kinase; PFAM: Carbohydrate/purine kinase YP_004505955.1 PFAM: Type IV pilus assembly PilZ; YcgR; KEGG: spe:Spro_2567 YcgR family protein YP_004505956.1 PFAM: N-formylglutamate amidohydrolase; KEGG: spe:Spro_2568 N-formylglutamate amidohydrolase YP_004505957.1 KEGG: spe:Spro_2569 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004505958.1 KEGG: spe:Spro_2580 hypothetical protein YP_004505959.1 KEGG: spe:Spro_2581 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Methylguanine DNA methyltransferase, ribonuclease-like YP_004505960.1 KEGG: spe:Spro_2582 fumarate/nitrate reduction transcriptional regulator; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp YP_004505961.1 PFAM: UspA; KEGG: spe:Spro_2583 universal stress protein UspE YP_004505962.1 KEGG: spe:Spro_2584 pyridine nucleotide transhydrogenase; PFAM: NAD(P) transhydrogenase, beta subunit YP_004505963.1 KEGG: spe:Spro_2585 NAD(P) transhydrogenase subunit alpha; TIGRFAM: NAD(P) transhydrogenase, alpha subunit; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal YP_004505964.1 PFAM: Protein of unknown function DUF1471; KEGG: spe:Spro_2586 hypothetical protein YP_004505965.1 KEGG: spe:Spro_2587 arginine/ornithine antiporter; TIGRFAM: Arginine/ornithine antiporter; PFAM: Amino acid permease-associated region YP_004505966.1 KEGG: spe:Spro_2588 hypothetical protein YP_004505967.1 KEGG: spe:Spro_2589 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004505968.1 KEGG: spe:Spro_2590 DNA-binding transcriptional regulator RstA; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004505969.1 KEGG: spe:Spro_2591 sensor protein RstB; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004505970.1 KEGG: spe:Spro_2592 carboxypeptidase Taq; PFAM: Peptidase M32, carboxypeptidase Taq metallopeptidase YP_004505971.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: mtc:MT0674 carboxyl esterase YP_004505972.1 KEGG: spe:Spro_2593 acid shock-inducible periplasmic protein; HAMAP: Acid shock protein; PFAM: Acid shock YP_004505973.1 KEGG: spe:Spro_2594 peptidase S1 and S6 chymotrypsin/Hap; PFAM: Peptidase S1/S6, chymotrypsin/Hap; SMART: Peptidase S1/S6, chymotrypsin/Hap YP_004505974.1 TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpA type; PFAM: Helicase-associated region; DNA/RNA helicase, C-terminal; Domain of unknown function DUF1605; KEGG: spe:Spro_2595 ATP-dependent RNA helicase HrpA; SMART: DEAD-like helicase, N-terminal; ATPase, AAA+ type, core; DNA/RNA helicase, C-terminal YP_004505975.1 KEGG: spe:Spro_2596 azoreductase; HAMAP: FMN-dependent NADH-azoreductase; PFAM: Flavodoxin-like fold YP_004505976.1 PFAM: Uncharacterised conserved protein UCP025560; KEGG: spe:Spro_2597 hypothetical protein YP_004505977.1 KEGG: spe:Spro_2598 hypothetical protein YP_004505978.1 KEGG: spe:Spro_2599 hypothetical protein YP_004505979.1 KEGG: spe:Spro_2600 NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region YP_004505980.1 PFAM: Domain of unknown function DUF306, Meta/HslJ; KEGG: spe:Spro_2601 heat-inducible protein YP_004505981.1 PFAM: Protein of unknown function DUF333; KEGG: spe:Spro_2602 lipoprotein YP_004505982.1 PFAM: Small multidrug resistance protein; KEGG: spe:Spro_2603 small multidrug resistance protein YP_004505983.1 TIGRFAM: Pyruvate-flavodoxin oxidoreductase; KEGG: spe:Spro_2604 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004505984.1 KEGG: yen:YE2857 hypothetical protein YP_004505985.1 KEGG: pva:Pvag_pPag30503 HTH-type transcriptional regulator; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3 YP_004505986.1 PFAM: B3/B4 tRNA-binding domain; KEGG: pva:Pvag_pPag30504 hypothetical protein YP_004505987.1 KEGG: spe:Spro_2607 C32 tRNA thiolase; HAMAP: tRNA 2-thiocytidine biosynthesis protein TtcA; PFAM: PP-loop YP_004505988.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: spe:Spro_2608 glyoxalase/bleomycin resistance protein/dioxygenase YP_004505989.1 KEGG: spe:Spro_2609 zinc transporter; HAMAP: Zinc transport protein zntB; PFAM: Mg2+ transporter protein, CorA-like YP_004505990.1 KEGG: spe:Spro_2610 hypothetical protein YP_004505991.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: spe:Spro_2611 extracellular solute-binding protein YP_004505992.1 KEGG: spe:Spro_2612 hypothetical protein YP_004505993.1 PFAM: Peptidase M14, carboxypeptidase A; KEGG: spe:Spro_2614 murein peptide amidase A YP_004505994.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; KEGG: spe:Spro_2615 mandelate racemase/muconate lactonizing protein YP_004505995.1 KEGG: spe:Spro_2616 thiol peroxidase; HAMAP: thiol peroxidase; PFAM: Redoxin YP_004505996.1 KEGG: spe:Spro_2617 DNA-binding transcriptional regulator TyrR; PFAM: RNA polymerase sigma factor 54, interaction; PAS fold; Amino acid-binding ACT; SMART: PAS; ATPase, AAA+ type, core YP_004505997.1 TIGRFAM: Conserved hypothetical protein CHP01620; HAMAP: UPF0283 membrane protein ycjF; KEGG: spe:Spro_2618 hypothetical protein; PFAM: Conserved hypothetical protein CHP01620 YP_004505998.1 PFAM: Protein of unknown function DUF463, YcjX-like protein; KEGG: spe:Spro_2619 hypothetical protein YP_004505999.1 KEGG: spe:Spro_2620 hypothetical protein YP_004506000.1 manually curated; TIGRFAM: Phage shock protein PspD; KEGG: spe:Spro_2621 peripheral inner membrane phage-shock protein; PFAM: Phage shock protein PspD YP_004506001.1 KEGG: spe:Spro_2622 DNA-binding transcriptional activator PspC; TIGRFAM: Phage shock protein C; PFAM: PspC YP_004506002.1 KEGG: spe:Spro_2623 phage shock protein B; TIGRFAM: Phage shock B; PFAM: Phage shock B YP_004506003.1 KEGG: spe:Spro_2624 phage shock protein PspA; TIGRFAM: Phage shock protein A; PFAM: PspA/IM30 YP_004506004.1 TIGRFAM: Transcription activator PspF; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; KEGG: spe:Spro_2625 phage shock protein operon transcriptional activator; SMART: ATPase, AAA+ type, core YP_004506005.1 PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; KEGG: spe:Spro_2626 cobalamin synthesis protein P47K YP_004506006.1 KEGG: spe:Spro_2627 carbonic anhydrase-like protein YP_004506007.1 KEGG: spe:Spro_2628 GTP cyclohydrolase; PFAM: Protein of unknown function DUF198 YP_004506008.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: spe:Spro_2629 extracellular solute-binding protein YP_004506009.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2630 binding-protein-dependent transport systems inner membrane component YP_004506010.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2631 binding-protein-dependent transport systems inner membrane component YP_004506011.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: spe:Spro_2632 oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_004506012.1 PFAM: ABC transporter-like; KEGG: spe:Spro_2633 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004506013.1 KEGG: spe:Spro_2634 peroxidase-like protein; TIGRFAM: Uncharacterised peroxidase-related; PFAM: Carboxymuconolactone decarboxylase YP_004506014.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_2635 LysR family transcriptional regulator YP_004506015.1 KEGG: spe:Spro_2636 D-alanyl-D-alanine carboxypeptidase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal YP_004506016.1 TIGRFAM: Oxidoreductase alpha (molybdopterin) subunit; KEGG: spe:Spro_2637 oxidoreductase alpha (molybdopterin) subunit; PFAM: Molydopterin dinucleotide-binding region; Molybdopterin oxidoreductase YP_004506017.1 SMART: Cold shock protein; TIGRFAM: Ribonuclease II, bacterial; Ribonuclease II/ribonuclease R, bacteria; KEGG: spe:Spro_2638 exoribonuclease II; HAMAP: Exoribonuclease 2; PFAM: Ribonuclease II/R; Ribonuclease B, OB region N-terminal; Ribosomal protein S1, RNA binding domain YP_004506018.1 PFAM: Carbon starvation protein CstA; KEGG: spe:Spro_2639 carbon starvation protein CstA YP_004506019.1 TIGRFAM: Transaldolase C; KEGG: spe:Spro_2640 fructose-6-phosphate aldolase; PFAM: Transaldolase YP_004506020.1 KEGG: spe:Spro_2643 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004506021.1 TIGRFAM: L-ribulose-5-phosphate 4-epimerase; KEGG: spe:Spro_2644 L-ribulose-5-phosphate 4-epimerase; PFAM: Class II aldolase/adducin, N-terminal YP_004506022.1 KEGG: spe:Spro_2645 lipoprotein YP_004506023.1 KEGG: spe:Spro_2646 translation initiation factor SUI1; TIGRFAM: Archaeal/bacterial translation initiation factor SUI1; PFAM: Translation initiation factor SUI1 YP_004506024.1 TIGRFAM: Orotidine 5'-phosphate decarboxylase, subfamily 1, core; KEGG: spe:Spro_2647 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase, core YP_004506025.1 PFAM: Protein of unknown function DUF1471; KEGG: spe:Spro_2648 hypothetical protein YP_004506026.1 KEGG: spe:Spro_2649 hypothetical protein YP_004506027.1 KEGG: spe:Spro_2650 tetratricopeptide repeat-containing protein YP_004506028.1 PFAM: Protein of unknown function DUF1049; KEGG: spe:Spro_2651 hypothetical protein YP_004506029.1 PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; KEGG: spe:Spro_2652 phosphatidylglycerophosphatase B; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase YP_004506030.1 PFAM: GTP cyclohydrolase II; TIGRFAM: GTP cyclohydrolase II; HAMAP: GTP cyclohydrolase-2; KEGG: spe:Spro_2653 GTP cyclohydrolase II YP_004506031.1 TIGRFAM: Aconitase/iron regulatory protein 2; KEGG: spe:Spro_2654 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004506032.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_2656 transcriptional regulator CysB YP_004506033.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; TIGRFAM: DNA topoisomerase I, bacterial-type; KEGG: spe:Spro_2657 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger; DNA topoisomerase I, zinc ribbon-like, bacterial-type YP_004506034.1 PFAM: Protein of unknown function DUF2498; KEGG: spe:Spro_2658 hypothetical protein YP_004506035.1 PFAM: Peptidase S49, N-terminal proteobacteria; Peptidase S49; KEGG: spe:Spro_2659 periplasmic protease YP_004506036.1 KEGG: spe:Spro_2660 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004506037.1 TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; KEGG: spe:Spro_2661 cob(I)alamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR YP_004506038.1 TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: spe:Spro_2662 23S rRNA pseudouridylate synthase B; SMART: RNA-binding S4 YP_004506039.1 KEGG: spe:Spro_2663 dioxygenase YP_004506040.1 KEGG: spe:Spro_2664 hypothetical protein YP_004506041.1 KEGG: spe:Spro_2665 hypothetical protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal YP_004506042.1 KEGG: spe:Spro_2666 phosphotransferase domain-containing protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal YP_004506043.1 TIGRFAM: Anthranilate synthase component I, TrpE; KEGG: spe:Spro_2667 anthranilate synthase component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal YP_004506044.1 TIGRFAM: Glutamine amidotransferase of anthranilate synthase; KEGG: spe:Spro_2668 anthranilate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal YP_004506045.1 PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; TIGRFAM: Anthranilate phosphoribosyl transferase; HAMAP: Anthranilate phosphoribosyl transferase; KEGG: spe:Spro_2669 anthranilate phosphoribosyltransferase YP_004506046.1 KEGG: spe:Spro_2670 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; PFAM: Indole-3-glycerol phosphate synthase; N-(5'phosphoribosyl)anthranilate isomerase (PRAI) YP_004506047.1 PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; TIGRFAM: Tryptophan synthase, beta chain; HAMAP: Tryptophan synthase beta chain; KEGG: spe:Spro_2671 tryptophan synthase subunit beta YP_004506048.1 PFAM: Tryptophan synthase, alpha chain; TIGRFAM: Tryptophan synthase, alpha chain; HAMAP: Tryptophan synthase, alpha chain; KEGG: spe:Spro_2672 tryptophan synthase subunit alpha YP_004506049.1 KEGG: spe:Spro_2673 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation region, bacteria YP_004506050.1 PFAM: Outer membrane protein, OmpW; KEGG: spe:Spro_2674 outer membrane protein W YP_004506051.1 PFAM: Uncharacterised protein family UPF0153; KEGG: rah:Rahaq_2625 hypothetical protein YP_004506052.1 KEGG: spe:Spro_2675 hypothetical protein; HAMAP: UPF0259 membrane protein yciC; PFAM: Uncharacterised protein family UPF0259 YP_004506053.1 PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: spe:Spro_2676 sulfate transporter YP_004506054.1 TIGRFAM: Intracellular septation protein A; HAMAP: Intracellular septation protein A; KEGG: spe:Spro_2677 intracellular septation protein A; PFAM: Intracellular septation protein A YP_004506055.1 PFAM: Thioesterase superfamily; KEGG: spe:Spro_2678 acyl-CoA thioester hydrolase YP_004506056.1 KEGG: spe:Spro_2682 transport protein TonB; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein YP_004506057.1 PFAM: Protein of unknown function DUF208; KEGG: spe:Spro_2683 hypothetical protein YP_004506058.1 PFAM: YCII-related; KEGG: spe:Spro_2684 YCII-like protein YP_004506059.1 PFAM: Phage P22 tailspike protein, head-binding; KEGG: eck:EC55989_2595 hypothetical protein; head-binding domain YP_004506060.1 KEGG: kpe:KPK_4121 regulatory protein Mnt YP_004506061.1 manually curated; KEGG: nit:NAL212_0856 hypothetical protein YP_004506062.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: sfx:S0248 DNA transfer protein YP_004506063.1 KEGG: sfv:SFV_0229 prophage DNA injection protein YP_004506064.1 KEGG: efe:EFER_2036 DNA transfer protein gp7 from phage origin YP_004506065.1 KEGG: efe:EFER_2037 hypothetical protein YP_004506066.1 KEGG: ses:SARI_02643 hypothetical protein YP_004506067.1 KEGG: seh:SeHA_C0406 packaged DNA stabilization protein GP10 YP_004506068.1 KEGG: sfv:SFV_0224 DNA stabilization protein YP_004506069.1 KEGG: efe:EFER_2041 hypothetical protein YP_004506070.1 KEGG: sfv:SFV_0222 coat protein YP_004506071.1 KEGG: seh:SeHA_C0402 scaffolding protein YP_004506072.1 KEGG: efe:EFER_2044 portal protein (protein gp1) YP_004506073.1 KEGG: sek:SSPA2233a terminase large subunit YP_004506074.1 PFAM: Terminase small subunit; KEGG: ypy:YPK_1220 terminase small subunit YP_004506075.1 KEGG: ppp:PHYPADRAFT_103959 hypothetical protein YP_004506076.1 KEGG: sec:SC0353 hypothetical protein YP_004506079.1 PFAM: Bacteriophage lysis protein; KEGG: ent:Ent638_2608 bacteriophage lysis protein YP_004506080.1 KEGG: sew:SeSA_A2272 lytic enzyme YP_004506081.1 KEGG: epy:EpC_20600 phage holin, lambda family; TIGRFAM: Holin, phage lambda; PFAM: Holin, phage lambda YP_004506082.1 PFAM: Phage antitermination Q-like; KEGG: ypy:YPK_1214 hypothetical protein YP_004506083.1 PFAM: Virulence-associated E; KEGG: ecr:ECIAI1_2654 conserved hypothetical protein; virulence-associated protein E YP_004506084.1 KEGG: hde:HDEF_1664 APSE-2 prophage: cro YP_004506085.1 KEGG: eoh:ECO103_3126 phage repressor; PFAM: Peptidase S24/S26A/S26B, conserved region; SMART: Helix-turn-helix type 3 YP_004506087.1 KEGG: bac:BamMC406_6704 hypothetical protein YP_004506089.1 KEGG: sed:SeD_A1098 hypothetical protein YP_004506091.1 KEGG: ses:SARI_02673 hypothetical protein YP_004506092.1 KEGG: ypy:YPK_1209 hypothetical protein YP_004506093.1 KEGG: ypy:YPK_1208 hypothetical protein YP_004506094.1 KEGG: ypy:YPK_1207 hypothetical protein YP_004506096.1 SMART: DNA-directed DNA polymerase, family A, palm domain; KEGG: ecr:ECIAI1_2664 DNA polymerase from bacteriophage origin YP_004506097.1 KEGG: sfv:SFV_1903 hypothetical protein YP_004506098.1 PFAM: VRR-NUC; KEGG: ecr:ECIAI1_2667 hypothetical protein YP_004506100.1 SMART: DEAD-like helicase, N-terminal; KEGG: eok:G2583_3139 superfamily II DNA/RNA helicases, SNF2 family YP_004506101.1 KEGG: pao:Pat9b_2166 excisionase YP_004506102.1 PFAM: Integrase, catalytic core, phage; KEGG: ecd:ECDH10B_1313 integrase YP_004506103.1 manually curated; KEGG: yen:YE1910 hypothetical protein YP_004506104.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: spe:Spro_2686 TetR family transcriptional regulator YP_004506105.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_2687 major facilitator transporter YP_004506106.1 manually curated; KEGG: ddc:Dd586_2135 hypothetical protein YP_004506107.1 HAMAP: Cardiolipin synthase; PFAM: Phospholipase D/Transphosphatidylase; KEGG: spe:Spro_2689 cardiolipin synthetase; SMART: Phospholipase D/Transphosphatidylase YP_004506108.1 PFAM: dsDNA mimic, KEGG: spe:Spro_2690 dsDNA-mimic protein YP_004506109.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: spe:Spro_2697 oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_004506110.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: spe:Spro_2698 oligopeptide transporter ATP-binding protein; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_004506111.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2699 binding-protein-dependent transport systems inner membrane component YP_004506112.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2700 oligopeptide transporter permease YP_004506113.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: yen:YE2233 periplasmic oligopeptide-binding protein precursor YP_004506114.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: spe:Spro_2702 extracellular solute-binding protein YP_004506115.1 KEGG: spe:Spro_2703 hypothetical protein; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: Multiple antibiotic resistance (MarC)-related YP_004506116.1 KEGG: spe:Spro_2704 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type; Aldehyde dehydrogenase YP_004506117.1 HAMAP: Thymidine kinase, subgroup; KEGG: spe:Spro_2705 thymidine kinase; PFAM: Thymidine kinase YP_004506118.1 KEGG: spe:Spro_2706 global DNA-binding transcriptional dual regulator H-NS; PFAM: Histone-like nucleoid-structuring protein H-NS; SMART: Histone-like nucleoid-structuring protein H-NS YP_004506120.1 KEGG: spe:Spro_2707 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004506121.1 TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: spe:Spro_2708 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_004506122.1 TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: spe:Spro_2709 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; PFAM: Nucleotidyl transferase YP_004506123.1 KEGG: spe:Spro_2710 response regulator of RpoS; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004506124.1 PFAM: Patatin; KEGG: spe:Spro_2711 hypothetical protein YP_004506125.1 manually curated; HAMAP: UPF0225 protein ychJ; KEGG: spe:Spro_2712 hypothetical protein; PFAM: SEC-C motif YP_004506126.1 TIGRFAM: Formyltetrahydrofolate deformylase; KEGG: spe:Spro_2713 formyltetrahydrofolate deformylase; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT YP_004506127.1 KEGG: spe:Spro_2714 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00730; PFAM: Conserved hypothetical protein CHP00730 YP_004506128.1 TIGRFAM: AP endonuclease, family 1; Exodeoxyribonuclease III xth; KEGG: spe:Spro_2715 exonuclease III; PFAM: Endonuclease/exonuclease/phosphatase YP_004506129.1 PFAM: NUDIX hydrolase domain; KEGG: spe:Spro_2716 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase YP_004506130.1 PFAM: Protein of unknown function DUF1496; KEGG: spe:Spro_2717 hypothetical protein YP_004506131.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: spe:Spro_2718 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain YP_004506132.1 TIGRFAM: tRNA 2-selenouridine synthase; HAMAP: tRNA 2-selenouridine synthase; KEGG: spe:Spro_2719 tRNA 2-selenouridine synthase; SMART: Rhodanese-like YP_004506133.1 TIGRFAM: Selenide water dikinase; HAMAP: Selenide, water dikinase; KEGG: spe:Spro_2720 selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal YP_004506134.1 PFAM: Nitroreductase-like; KEGG: spe:Spro_2721 hypothetical protein YP_004506135.1 KEGG: spe:Spro_2722 protease 4; TIGRFAM: Peptidase S49, protease IV; Peptidase S49, SppA; PFAM: Peptidase S49 YP_004506136.1 TIGRFAM: L-asparaginase, type I; KEGG: spe:Spro_2723 cytoplasmic asparaginase I; PFAM: Asparaginase/glutaminase YP_004506137.1 KEGG: spe:Spro_2724 nicotinamidase/pyrazinamidase; PFAM: Isochorismatase-like YP_004506138.1 PFAM: Glycoside hydrolase, family 18, catalytic domain; KEGG: spe:Spro_2725 glycoside hydrolase; SMART: Chitinase II YP_004506139.1 PFAM: Protein of unknown function DUF1315; KEGG: spe:Spro_2726 hypothetical protein YP_004506140.1 PFAM: Methionine sulphoxide reductase B; TIGRFAM: Methionine sulphoxide reductase B; HAMAP: Peptide methionine sulfoxide reductase msrB; KEGG: spe:Spro_2727 methionine sulfoxide reductase B YP_004506141.1 TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: ent:Ent638_1675 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004506142.1 PFAM: Aldose 1-epimerase; KEGG: spe:Spro_2729 aldose 1-epimerase YP_004506143.1 PFAM: MltA-interacting MipA; KEGG: spe:Spro_2730 MltA-interacting MipA family protein YP_004506145.1 KEGG: spe:Spro_2731 serine protein kinase, PrkA; PFAM: PrkA AAA; PrkA serine kinase; SMART: PrkA AAA YP_004506146.1 KEGG: spe:Spro_2732 hypothetical protein; HAMAP: UPF0229 protein yeaH; PFAM: Protein of unknown function DUF444 YP_004506147.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN1830 acetyltransferase YP_004506148.1 PFAM: ThiJ/PfpI; KEGG: pfl:PFL_3588 ThiJ/PfpI family protein YP_004506149.1 PFAM: Uncharacterised protein family UPF0057; KEGG: spe:Spro_2734 hypothetical protein YP_004506150.1 PFAM: Protein of unknown function DUF2566; KEGG: spe:Spro_2735 hypothetical protein YP_004506151.1 KEGG: spe:Spro_2736 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004506152.1 KEGG: spe:Spro_2738 hypothetical protein YP_004506154.1 PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: spe:Spro_2739 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004506155.1 PFAM: ABC transporter-like; KEGG: spe:Spro_2740 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004506156.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: spe:Spro_2741 extracellular solute-binding protein YP_004506157.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2742 binding-protein-dependent transport systems inner membrane component YP_004506158.1 KEGG: spe:Spro_2743 endodeoxyribonuclease YP_004506159.1 KEGG: spe:Spro_2744 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004506160.1 PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; TIGRFAM: Alanine racemase; HAMAP: Alanine racemase; KEGG: spe:Spro_2745 alanine racemase YP_004506161.1 HAMAP: D-amino acid dehydrogenase small subunit; KEGG: spe:Spro_2746 D-amino acid dehydrogenase small subunit; PFAM: FAD dependent oxidoreductase YP_004506163.1 KEGG: rah:Rahaq_5015 hypothetical protein YP_004506164.1 KEGG: pay:PAU_01648 tail fiber protein YP_004506165.1 KEGG: plu:plu3026 hypothetical protein YP_004506166.1 KEGG: pay:PAU_01576 bacteriophage protein YP_004506167.1 KEGG: bmj:BMULJ_01435 bacteriophage protein YP_004506168.1 KEGG: sec:SC2587 bacteriophage protein YP_004506170.1 manually curated; KEGG: spq:SPAB_02219 hypothetical protein YP_004506171.1 KEGG: spq:SPAB_02220 hypothetical protein YP_004506172.1 KEGG: spq:SPAB_02221 hypothetical protein YP_004506173.1 KEGG: sty:STY1062 bacteriophage protein YP_004506174.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: spq:SPAB_02223 hypothetical protein YP_004506175.1 KEGG: ent:Ent638_0808 bacteriophage protein YP_004506176.1 KEGG: pay:PAU_01568 bacteriophage protein YP_004506177.1 KEGG: ctu:Ctu_34230 hypothetical protein YP_004506178.1 KEGG: rah:Rahaq_5001 bacteriophage protein YP_004506179.1 KEGG: rah:Rahaq_5000 hypothetical protein YP_004506180.1 KEGG: rah:Rahaq_4999 hypothetical protein YP_004506181.1 KEGG: sec:SC2603 bacteriophage protein YP_004506182.1 KEGG: sty:STY1053 bacteriophage protein YP_004506183.1 PFAM: Protein of unknown function DUF2184; KEGG: spq:SPAB_02232 hypothetical protein YP_004506184.1 KEGG: eok:G2583_3117 bacteriophage protein YP_004506185.1 PFAM: Protein of unknown function DUF2213; KEGG: see:SNSL254_A1157 hypothetical protein YP_004506186.1 manually curated; KEGG: ent:Ent638_0801 bacteriophage protein YP_004506187.1 KEGG: ecr:ECIAI1_2646 hypothetical protein; TIGRFAM: Phage-related protein HI1409; PFAM: Protein of unknown function DUF2212; Phage-related protein, HI1409, conserved region YP_004506188.1 KEGG: see:SNSL254_A1154 GP33 TerL YP_004506190.1 KEGG: ypi:YpsIP31758_2228 hypothetical protein YP_004506191.1 KEGG: cvi:CV_2285 hypothetical protein YP_004506192.1 KEGG: spe:Spro_3473 hypothetical protein YP_004506193.1 KEGG: epy:EpC_17590 lytic enzyme YP_004506194.1 KEGG: epy:EpC_17580 similar to phage lysis protein S; TIGRFAM: Holin, phage lambda; PFAM: Holin, phage lambda YP_004506195.1 KEGG: sbp:Sbal223_4362 hypothetical protein YP_004506196.1 PFAM: Phage antitermination Q-like; KEGG: yen:YE2336 late gene antiterminator protein YP_004506197.1 KEGG: epy:EpC_17560 conserved bacteriophage protein; manually curated; PFAM: Protein of unknown function DUF1364 YP_004506198.1 PFAM: Protein of unknown function DUF1367; KEGG: see:SNSL254_A1146 gifsy-2 prophage protein YP_004506199.1 PFAM: Protein of unknown function DUF2513; KEGG: ecl:EcolC_2886 hypothetical protein YP_004506200.1 PFAM: DNA methylase, C-5 cytosine-specific; KEGG: rah:Rahaq_1788 C-5 cytosine-specific DNA methylase YP_004506201.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: eic:NT01EI_3149 DNA adenine methyltransferase YP_004506203.1 KEGG: see:SNSL254_A1142 hypothetical protein YP_004506204.1 KEGG: rah:Rahaq_4968 hypothetical protein YP_004506205.1 KEGG: ypi:YpsIP31758_2244 replicative DNA helicase; PFAM: DNA helicase, DnaB-like, C-terminal; SMART: ATPase, AAA+ type, core YP_004506206.1 PFAM: Phage replication protein O, N-terminal; KEGG: sgl:SG1144 hypothetical protein YP_004506207.1 KEGG: ecy:ECSE_2252 hypothetical protein YP_004506208.1 PFAM: Protein of unknown function DUF1019; KEGG: ypi:YpsIP31758_2246 hypothetical protein YP_004506209.1 manually curated; PFAM: Helix-turn-helix type 3; KEGG: ecl:EcolC_2058 transcriptional repressor DicA; SMART: Helix-turn-helix type 3 YP_004506211.1 KEGG: see:SNSL254_A1135 hypothetical protein YP_004506213.1 KEGG: see:SNSL254_A1133 hypothetical protein YP_004506214.1 PFAM: Siphovirus Gp157; KEGG: see:SNSL254_A1132 hypothetical protein YP_004506215.1 KEGG: ecy:ECSE_2259 hypothetical protein YP_004506216.1 KEGG: plu:plu3485 hypothetical protein YP_004506217.1 PFAM: Excisionase-like; KEGG: eoi:ECO111_2979 excisionase YP_004506218.1 PFAM: Integrase, lambda-type, N-terminal DNA-binding; Integrase, N-terminal SAM-like, phage; Integrase, catalytic core, phage; KEGG: ecg:E2348C_0979 predicted integrase YP_004506219.1 PFAM: Sporulation stage V, protein R; KEGG: spe:Spro_2747 SpoVR family protein YP_004506220.1 SMART: HTH transcriptional regulator, GntR; TIGRFAM: Fatty acid response transcription factor FadR; KEGG: spe:Spro_2748 fatty acid metabolism regulator; HAMAP: Fatty acid metabolism regulator protein; PFAM: Fatty acid responsive transcription factor FadR, C-terminal; HTH transcriptional regulator, GntR YP_004506221.1 TIGRFAM: Na+/H+ antiporter NhaB; HAMAP: Na+/H+ antiporter NhaB; KEGG: spe:Spro_2749 sodium/proton antiporter; PFAM: Na+/H+ antiporter NhaB YP_004506222.1 KEGG: spe:Spro_2750 disulfide bond formation protein B; HAMAP: Disulfide bond formation protein B; PFAM: Disulphide bond formation protein DsbB YP_004506223.1 KEGG: spe:Spro_2751 hypothetical protein; HAMAP: Uncharacterised conserved protein UCP006173; PFAM: Uncharacterised protein family UPF0153 YP_004506224.1 PFAM: Protein of unknown function DUF883, ElaB; KEGG: spe:Spro_2752 hypothetical protein YP_004506225.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: spe:Spro_2753 hypothetical protein YP_004506226.1 TIGRFAM: Lytic murein transglycosylase; KEGG: spe:Spro_2754 lytic murein transglycosylase YP_004506227.1 KEGG: spe:Spro_2755 hypothetical protein; HAMAP: YcgL domain; PFAM: YcgL domain YP_004506228.1 TIGRFAM: Septum formation inhibitor MinC; HAMAP: Septum formation inhibitor MinC; KEGG: spe:Spro_2756 septum formation inhibitor; PFAM: Septum formation inhibitor MinC, C-terminal; Septum formation inhibitor MinC, N-terminal YP_004506229.1 KEGG: spe:Spro_2757 cell division inhibitor MinD; TIGRFAM: Septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase YP_004506230.1 TIGRFAM: Septum formation topological specificity factor MinE; HAMAP: Septum formation topological specificity factor MinE; KEGG: yen:YE2373 cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE YP_004506231.1 SMART: 3'-5' exonuclease; Helicase/RNase D C-terminal, HRDC domain; TIGRFAM: Ribonuclease D; KEGG: spe:Spro_2759 ribonuclease D; PFAM: 3'-5' exonuclease; Helicase/RNase D C-terminal, HRDC domain YP_004506232.1 KEGG: spe:Spro_2760 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004506233.1 KEGG: spe:Spro_2761 Slp family outer membrane lipoprotein; TIGRFAM: Outer membrane lipoprotein Slp; PFAM: Outer membrane lipoprotein Slp YP_004506234.1 KEGG: spe:Spro_2762 peptidase M22 glycoprotease; TIGRFAM: universal protein YeaZ; PFAM: Peptidase M22, glycoprotease YP_004506235.1 SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal; KEGG: spe:Spro_2763 helicase C2 YP_004506236.1 PFAM: Endoribonuclease L-PSP; KEGG: spe:Spro_2764 endoribonuclease L-PSP YP_004506237.1 KEGG: spe:Spro_2765 multidrug efflux system protein MdtI; HAMAP: Spermidine export protein mdtI; PFAM: Small multidrug resistance protein YP_004506238.1 KEGG: spe:Spro_2766 small multidrug resistance protein; HAMAP: Spermidine export protein mdtJ; PFAM: Small multidrug resistance protein YP_004506239.1 TIGRFAM: KDPG/KHG aldolase; KEGG: spe:Spro_2767 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; PFAM: KDPG/KHG aldolase YP_004506240.1 TIGRFAM: Glucose-6-phosphate dehydrogenase; KEGG: spe:Spro_2768 glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase YP_004506241.1 PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: spe:Spro_2769 DNA-binding transcriptional regulator HexR YP_004506242.1 TIGRFAM: Pyruvate kinase; KEGG: spe:Spro_2770 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta YP_004506243.1 KEGG: lsp:Bsph_2663 protein lap4 (protein scribble) (protein smell-impaired) YP_004506244.1 KEGG: spe:Spro_2771 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; TIGRFAM: Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase YP_004506245.1 KEGG: spe:Spro_2772 hypothetical protein; PFAM: Peptidase M23; Opacity-associated protein A, N-terminal; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004506246.1 PFAM: ABC transporter metal-binding lipoprotein; KEGG: spe:Spro_2773 high-affinity zinc transporter periplasmic component YP_004506247.1 PFAM: ABC transporter-like; KEGG: spe:Spro_2774 high-affinity zinc transporter ATPase; SMART: ATPase, AAA+ type, core YP_004506248.1 PFAM: ABC-3; KEGG: spe:Spro_2775 high-affinity zinc transporter membrane protein YP_004506249.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: spe:Spro_2776 Holliday junction DNA helicase RuvB; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal YP_004506250.1 SMART: Helix-hairpin-helix DNA-binding motif, class 1; TIGRFAM: Bacterial DNA recombination protein RuvA; KEGG: spe:Spro_2777 Holliday junction DNA helicase RuvA; HAMAP: Holliday junction ATP-dependent DNA helicase ruvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal YP_004506251.1 PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; HAMAP: Crossover junction endodeoxyribonuclease RuvC; KEGG: spe:Spro_2778 Holliday junction resolvase YP_004506252.1 KEGG: spe:Spro_2779 hypothetical protein; TIGRFAM: Protein of unknown function DUF28; PFAM: Protein of unknown function DUF28 YP_004506253.1 PFAM: NUDIX hydrolase domain; KEGG: spe:Spro_2780 NUDIX hydrolase YP_004506254.1 TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; KEGG: spe:Spro_2781 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain YP_004506255.1 manually curated; TIGRFAM: Regulatory protein, FmdB, KEGG: spe:Spro_2782 FmdB family regulatory protein; PFAM: Regulatory protein, FmdB YP_004506256.1 PFAM: Isochorismatase-like; KEGG: spe:Spro_2783 hypothetical protein YP_004506257.1 PFAM: Protein of unknown function DUF72; KEGG: spe:Spro_2784 hypothetical protein YP_004506258.1 KEGG: spe:Spro_2785 hypothetical protein YP_004506259.1 TIGRFAM: tRNA (cmo5U34)-methyltransferase; HAMAP: tRNA (cmo5U34)-methyltransferase; KEGG: spe:Spro_2786 methyltransferase; PFAM: Methyltransferase type 11 YP_004506260.1 TIGRFAM: tRNA (mo5U34)-methyltransferase; HAMAP: tRNA (mo5U34)-methyltransferase; KEGG: spe:Spro_2787 methyltransferase; PFAM: tRNA (mo5U34)-methyltransferase YP_004506261.1 PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: eta:ETA_02710 peptidyl-prolyl cis-trans isomerase, fragment YP_004506262.1 KEGG: spe:Spro_4151 hypothetical protein YP_004506263.1 KEGG: spe:Spro_2788 copper homeostasis protein CutC; HAMAP: Copper homeostasis protein cutC; PFAM: CutC YP_004506264.1 KEGG: spe:Spro_2789 aminotransferase class I and II; PFAM: Aminotransferase, class I/II YP_004506265.1 PFAM: Protein of unknown function DUF991; KEGG: spe:Spro_2790 hypothetical protein YP_004506266.1 TIGRFAM: Arginyl-tRNA synthetase, class Ic; HAMAP: Arginyl-tRNA synthetase, class Ic; KEGG: spe:Spro_2791 arginyl-tRNA synthetase YP_004506267.1 manually curated; TIGRFAM: Flagellin assembly, membrane protein MviN; KEGG: spe:Spro_2792 integral membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN YP_004506268.1 PFAM: Oxidoreductase, N-terminal; KEGG: spe:Spro_2793 oxidoreductase domain-containing protein YP_004506269.1 KEGG: spe:Spro_2794 hypothetical protein; HAMAP: Protein of unknown function DUF480; PFAM: Protein of unknown function DUF480 YP_004506270.1 KEGG: spe:Spro_2795 ribosomal-protein-S5-alanine N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_004506271.1 KEGG: spe:Spro_2796 multidrug resistance protein MdtH; HAMAP: Multidrug resistance protein mdtH; PFAM: Major facilitator superfamily MFS-1 YP_004506272.1 KEGG: spe:Spro_2797 hypothetical protein YP_004506273.1 KEGG: spe:Spro_2798 glutaredoxin 2; TIGRFAM: Glutaredoxin, GrxB; PFAM: Glutaredoxin 2, C-terminal YP_004506274.1 PFAM: ABC-1; KEGG: spe:Spro_2799 hypothetical protein YP_004506275.1 PFAM: Protein of unknown function DUF1439; KEGG: spe:Spro_2800 hypothetical protein YP_004506276.1 KEGG: spe:Spro_2801 hypothetical protein YP_004506277.1 KEGG: spe:Spro_2802 hypothetical protein; HAMAP: Uncharacterised conserved protein UCP029143; PFAM: ASCH domain YP_004506278.1 PFAM: YebG; KEGG: spe:Spro_2803 YebG family protein YP_004506279.1 KEGG: spe:Spro_2804 ATP-dependent RNA helicase DbpA; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004506280.1 PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; TIGRFAM: Phosphoribosylglycinamide formyltransferase 2; HAMAP: Phosphoribosylglycinamide formyltransferase 2; KEGG: spe:Spro_2805 phosphoribosylglycinamide formyltransferase 2 YP_004506281.1 KEGG: spe:Spro_2806 hypothetical protein; HAMAP: Uncharacterised protein family UPF0181; PFAM: Uncharacterised protein family UPF0181 YP_004506282.1 PFAM: Glycosyl transferase, family 2; KEGG: spe:Spro_2807 glycosyl transferase YP_004506284.1 TIGRFAM: Para-aminobenzoate synthase, component I; KEGG: spe:Spro_2808 para-aminobenzoate synthase subunit I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal YP_004506285.1 PFAM: NUDIX hydrolase domain; KEGG: spe:Spro_2809 hypothetical protein YP_004506286.1 TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; KEGG: spe:Spro_2810 L-serine dehydratase 1; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain YP_004506287.1 KEGG: spe:Spro_2811 EAL domain-containing protein; PFAM: Diguanylate phosphodiesterase, predicted; SMART: Diguanylate phosphodiesterase, predicted YP_004506288.1 PFAM: Integral membrane protein TerC; Cystathionine beta-synthase, core; Transporter-associated region; KEGG: spe:Spro_2812 integral membrane protein TerC YP_004506289.1 TIGRFAM: Phosphotransferase system, sorbose subfamily IIB component, subgroup; Phosphotransferase system, fructose subfamily IIA component, subgroup; KEGG: spe:Spro_2813 PTS system mannose/fructose/sorbose family transporter subunit IIB; PFAM: Phosphotransferase system, sorbose subfamily IIB component; Phosphotransferase system, fructose subfamily IIA component YP_004506290.1 KEGG: spe:Spro_2814 PTS system mannose/fructose/sorbose family transporter subunit IIC; TIGRFAM: Phosphotransferase system, sorbose-specific IIC subunit, subgroup; PFAM: Phosphotransferase system, sorbose-specific IIC subunit YP_004506291.1 KEGG: spe:Spro_2815 PTS system mannose-specific transporter subunit IID; TIGRFAM: Phosphotransferase system, mannose/fructose/sorbose family IID component, subgroup; PFAM: Phosphotransferase system, mannose/fructose/sorbose family IID component YP_004506292.1 KEGG: spe:Spro_2816 hypothetical protein; HAMAP: UPF0266 membrane protein yobD; PFAM: Protein of unknown function DUF986 YP_004506293.1 KEGG: spe:Spro_2817 hypothetical protein; HAMAP: UPF0059 membrane protein yebN; PFAM: Protein of unknown function DUF204 YP_004506294.1 KEGG: spe:Spro_2818 major facilitator transporter; manually curated; PFAM: Major facilitator superfamily MFS-1 YP_004506295.1 SMART: HTH transcriptional regulator, ArsR; KEGG: spe:Spro_2819 ArsR family transcriptional regulator YP_004506296.1 KEGG: spe:Spro_2820 23S rRNA methyltransferase A; PFAM: Methyltransferase type 11 YP_004506297.1 PFAM: Multi-copper polyphenol oxidoreductase, laccase; KEGG: spe:Spro_2821 hypothetical protein YP_004506298.1 KEGG: rah:Rahaq_2905 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004506299.1 KEGG: spe:Spro_2823 beta-lactamase domain-containing protein YP_004506300.1 KEGG: spe:Spro_2824 hypothetical protein YP_004506301.1 PFAM: Amino acid permease-associated region; KEGG: spe:Spro_2825 amino acid permease-associated protein YP_004506302.1 KEGG: spe:Spro_2826 hypothetical protein YP_004506303.1 PFAM: Protein of unknown function DUF2591; KEGG: spe:Spro_2827 hypothetical protein YP_004506304.1 KEGG: pva:Pvag_1856 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004506305.1 KEGG: spe:Spro_2828 hypothetical protein YP_004506306.1 KEGG: spe:Spro_2830 hypothetical protein YP_004506307.1 KEGG: spe:Spro_2831 hypothetical protein YP_004506308.1 KEGG: spe:Spro_2832 hypothetical protein YP_004506309.1 KEGG: spe:Spro_2833 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004506310.1 PFAM: Protein of unknown function DUF1304; KEGG: spe:Spro_2834 hypothetical protein YP_004506311.1 PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: spe:Spro_2835 pirin domain-containing protein YP_004506313.1 KEGG: spe:Spro_2836 LysM domain/BON superfamily protein; PFAM: Peptidoglycan-binding lysin domain; Transport-associated; SMART: Peptidoglycan-binding Lysin subgroup; Transport-associated and nodulation region, bacteria YP_004506314.1 PFAM: Protein of unknown function DUF1482; KEGG: spe:Spro_2837 hypothetical protein YP_004506315.1 KEGG: spe:Spro_2838 hypothetical protein YP_004506316.1 PFAM: Porin, Gram-negative type; KEGG: spe:Spro_2839 porin YP_004506317.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; TIGRFAM: Succinylglutamate desuccinylase; HAMAP: Succinylglutamate desuccinylase; KEGG: spe:Spro_2840 succinylglutamate desuccinylase YP_004506318.1 PFAM: Succinylarginine dihydrolase; TIGRFAM: Succinylarginine dihydrolase; HAMAP: N-succinylarginine dihydrolase; KEGG: spe:Spro_2841 succinylarginine dihydrolase YP_004506319.1 PFAM: Aldehyde dehydrogenase; TIGRFAM: Succinylglutamic semialdehyde dehydrogenase; HAMAP: Succinylglutamic semialdehyde dehydrogenase; KEGG: spe:Spro_2842 succinylglutamic semialdehyde dehydrogenase YP_004506320.1 TIGRFAM: Arginine N-succinyltransferase AstA; Arginine N-succinyltransferase Ast/AOST; KEGG: spe:Spro_2843 arginine succinyltransferase; PFAM: Arginine N-succinyltransferase Ast/AOST YP_004506321.1 PFAM: Aminotransferase class-III; TIGRFAM: Succinylornithine transaminase; Acetylornithine/succinylornithine aminotransferase; HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase; KEGG: spe:Spro_2844 bifunctional succinylornithine transaminase/acetylornithine transaminase YP_004506322.1 KEGG: spe:Spro_2852 alpha/beta hydrolase domain-containing protein YP_004506323.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: spe:Spro_2853 oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_004506324.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: spe:Spro_2854 oligopeptide/dipeptide ABC transporter ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_004506325.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2855 binding-protein-dependent transport systems inner membrane component YP_004506326.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2856 binding-protein-dependent transport systems inner membrane component YP_004506327.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: spe:Spro_2857 extracellular solute-binding protein YP_004506328.1 KEGG: spe:Spro_2858 transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR YP_004506329.1 PFAM: Cytochrome bd ubiquinol oxidase, subunit I; KEGG: spe:Spro_2859 cytochrome bd ubiquinol oxidase subunit I YP_004506330.1 KEGG: spe:Spro_2860 cytochrome d ubiquinol oxidase subunit II; TIGRFAM: Cytochrome bd ubiquinol oxidase, subunit II; PFAM: Cytochrome bd ubiquinol oxidase, subunit II YP_004506331.1 PFAM: Protein of unknown function DUF2474; KEGG: spe:Spro_2861 hypothetical protein YP_004506332.1 KEGG: spe:Spro_2870 hypothetical protein YP_004506334.1 PFAM: Fatty acid desaturase, type 1; KEGG: spe:Spro_2862 fatty acid desaturase YP_004506335.1 PFAM: Fatty acid desaturase, type 1; KEGG: spe:Spro_2863 fatty acid desaturase YP_004506336.1 PFAM: Fatty acid hydroxylase; KEGG: spe:Spro_2864 fatty acid hydroxylase YP_004506337.1 PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; KEGG: spe:Spro_2865 hypothetical protein YP_004506338.1 TIGRFAM: Conserved hypothetical protein, F390 synthetase-related; KEGG: spe:Spro_2866 adenylate-forming protein YP_004506339.1 KEGG: spe:Spro_2867 beta-lactamase domain-containing protein YP_004506340.1 KEGG: spe:Spro_2868 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004506341.1 KEGG: spe:Spro_2869 beta-ketoacyl-acyl-carrier-protein synthase I; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_004506342.1 TIGRFAM: Nitrate reductase, gamma subunit; KEGG: spe:Spro_2880 respiratory nitrate reductase subunit gamma; PFAM: Nitrate reductase, gamma subunit YP_004506343.1 TIGRFAM: Nitrate reductase, delta subunit; KEGG: spe:Spro_2881 nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit YP_004506344.1 KEGG: spe:Spro_2882 nitrate reductase subunit beta; TIGRFAM: Nitrate reductase, beta subunit YP_004506345.1 TIGRFAM: Nitrate reductase, alpha subunit; KEGG: spe:Spro_2883 nitrate reductase subunit alpha; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region YP_004506346.1 KEGG: spe:Spro_2884 hypothetical protein YP_004506347.1 PFAM: Glycosyl transferase, family 2; KEGG: spe:Spro_2885 glycosyl transferase YP_004506348.1 PFAM: Glycosyl transferase, family 2; KEGG: spe:Spro_2886 glycosyl transferase YP_004506349.1 PFAM: Carbohydrate-binding, CenC-like; KEGG: spe:Spro_2887 carbohydrate-binding CenC domain-containing protein YP_004506350.1 PFAM: Glycosyl transferase, family 2; KEGG: spe:Spro_2888 glycosyl transferase YP_004506351.1 PFAM: Glycosyl transferase, group 1; KEGG: spe:Spro_2889 group 1 glycosyl transferase YP_004506352.1 PFAM: Glycosyl transferase, family 2; KEGG: spe:Spro_2890 glycosyl transferase YP_004506353.1 KEGG: spe:Spro_2891 hypothetical protein YP_004506354.1 PFAM: Polysaccharide biosynthesis protein; KEGG: spe:Spro_2892 polysaccharide biosynthesis protein YP_004506355.1 TIGRFAM: Exopolysaccharide synthesis protein; KEGG: spe:Spro_2893 non-specific protein-tyrosine kinase; PFAM: Lipopolysaccharide biosynthesis YP_004506356.1 KEGG: spe:Spro_2894 polysaccharide export protein; manually curated; PFAM: Polysaccharide export protein; Soluble ligand binding domain YP_004506357.1 KEGG: spe:Spro_2895 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; TIGRFAM: Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: Glycosyl transferase, family 4, conserved region YP_004506358.1 KEGG: spe:Spro_2896 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004506359.1 KEGG: spe:Spro_2897 transcriptional regulator CadC; manually curated; PFAM: Signal transduction response regulator, C-terminal YP_004506360.1 KEGG: spe:Spro_2898 nitrite transporter; TIGRFAM: Nitrate transporter; PFAM: Major facilitator superfamily MFS-1 YP_004506361.1 KEGG: spe:Spro_2899 nitrate/nitrite sensor protein NarX; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; HAMP linker domain; ATP-binding region, ATPase-like; SMART: HAMP linker domain; ATP-binding region, ATPase-like YP_004506362.1 KEGG: spe:Spro_2900 transcriptional regulator NarL; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004506363.1 KEGG: spe:Spro_2901 hypothetical protein YP_004506364.1 KEGG: spe:Spro_2902 peptidase A24A prepilin type IV; PFAM: Peptidase A24A, prepilin type IV YP_004506365.1 KEGG: spe:Spro_2903 PEBP family protein; TIGRFAM: YbhB/YbcL; PFAM: Phosphatidylethanolamine-binding protein PEBP YP_004506366.1 TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; KEGG: spe:Spro_2904 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase YP_004506367.1 KEGG: spe:Spro_2905 molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; BFD-like [2Fe-2S]-binding region YP_004506368.1 TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirB; Nitrite reductase [NAD(P)H] large subunit, NirD; KEGG: spe:Spro_2906 nitrite reductase (NAD(P)H), large subunit; PFAM: Nitrite/sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like YP_004506369.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Nitrate transport ATP-binding subunit C/D; KEGG: spe:Spro_2907 nitrate ABC transporter ATPase subunits C and D; PFAM: ABC transporter-like YP_004506370.1 KEGG: spe:Spro_2908 nitrate ABC transporter inner membrane subunit; TIGRFAM: Nitrate transport permease; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004506371.1 KEGG: spe:Spro_2909 nitrate-binding proteint YP_004506372.1 PFAM: Nitrate/nitrite sensing protein NIT; ANTAR; KEGG: spe:Spro_2910 response regulator receiver/ANTAR domain-containing protein YP_004506373.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: spe:Spro_2911 extracellular solute-binding protein YP_004506374.1 PFAM: ABC transporter-like; KEGG: spe:Spro_2912 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004506375.1 PFAM: ABC transporter-like; KEGG: spe:Spro_2913 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004506376.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2914 binding-protein-dependent transport systems inner membrane component YP_004506377.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2915 binding-protein-dependent transport systems inner membrane component YP_004506378.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: spe:Spro_2916 4-phytase YP_004506379.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_2917 transcriptional regulator CysB-like protein YP_004506380.1 PFAM: ChaC-like protein; KEGG: spe:Spro_2918 ChaC family protein YP_004506381.1 PFAM: ChaB; KEGG: ctu:Ctu_24170 cation transport regulator YP_004506382.1 PFAM: FAD-binding 9, siderophore-interacting; Siderophore-interacting protein; KEGG: spe:Spro_2919 FAD-binding 9 siderophore-interacting domain-containing protein YP_004506383.1 KEGG: spe:Spro_2920 calcium/sodium:proton antiporter; TIGRFAM: Calcium/proton exchanger; PFAM: Sodium/calcium exchanger membrane region YP_004506384.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: spe:Spro_2921 aspartyl/asparaginyl beta-hydroxylase YP_004506385.1 PFAM: PhoH-like protein; KEGG: spe:Spro_2925 hypothetical protein YP_004506387.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: spe:Spro_2926 TonB-dependent receptor YP_004506388.1 KEGG: spe:Spro_2927 Dyp-type peroxidase; TIGRFAM: Tat-translocated enzyme; Twin-arginine translocation pathway, signal sequence; Dyp-type peroxidase; PFAM: Dyp-type peroxidase YP_004506389.1 PFAM: Peptidase M75, Imelysin; KEGG: spe:Spro_2928 hypothetical protein YP_004506390.1 PFAM: Iron permease FTR1; KEGG: spe:Spro_2929 iron permease FTR1 YP_004506391.1 KEGG: spe:Spro_2930 sodium/proline symporter; TIGRFAM: Sodium/proline symporter; Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter YP_004506392.1 TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 3; KEGG: spe:Spro_2931 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; PFAM: Proline dehydrogenase; Aldehyde dehydrogenase YP_004506393.1 KEGG: spe:Spro_2932 YcfA family protein; manually curated; PFAM: YcfA-like YP_004506394.1 PFAM: Uncharacterised protein family UPF0150; KEGG: spe:Spro_2933 hypothetical protein YP_004506395.1 PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: spe:Spro_2934 amino-acid ABC transporter ATP-binding protein YecC; SMART: ATPase, AAA+ type, core YP_004506396.1 KEGG: spe:Spro_2935 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004506397.1 KEGG: spe:Spro_2936 cystine transporter subunit; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor YP_004506398.1 TIGRFAM: Pyridoxal phosphate-dependent deaminase; KEGG: spe:Spro_2937 D-cysteine desulfhydrase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004506399.1 TIGRFAM: flagellar regulatory protein FliZ; KEGG: spe:Spro_2938 flagella biosynthesis protein FliZ YP_004506400.1 KEGG: spe:Spro_2939 flagellar biosynthesis sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3 YP_004506401.1 PFAM: Flagellin, N-terminal; Flagellin, C-terminal; KEGG: spe:Spro_2940 flagellin domain-containing protein YP_004506402.1 PFAM: Flagellar hook-associated 2, C-terminal; Flagellar hook-associated protein 2, N-terminal; Flagellin hook, IN motif; KEGG: spe:Spro_2941 flagellar hook-associated 2 domain-containing protein YP_004506403.1 KEGG: spe:Spro_2942 flagellar protein FliS; TIGRFAM: Flagellar protein FliS; PFAM: Flagellar protein FliS YP_004506404.1 KEGG: spe:Spro_2943 flagellar biosynthesis protein FliT; HAMAP: Flagellar protein fliT; PFAM: Flagellar export chaperone YP_004506405.1 KEGG: spe:Spro_2944 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004506409.1 TIGRFAM: Flagellar hook-basal body complex protein FliE; HAMAP: Flagellar hook-basal body complex protein FliE; KEGG: spe:Spro_2946 flagellar hook-basal body complex subunit FliE; PFAM: Flagellar hook-basal body complex protein FliE YP_004506410.1 KEGG: spe:Spro_2947 flagellar MS-ring protein; TIGRFAM: Flagellar FliF M-ring protein; PFAM: Secretory protein YscJ/FliF; Flagellar M-ring C-terminal YP_004506411.1 KEGG: spe:Spro_2948 flagellar motor switch protein G; TIGRFAM: Flagellar motor switch protein FliG; PFAM: Flagellar motor switch protein FliG YP_004506412.1 PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: spe:Spro_2949 flagellar assembly protein H YP_004506413.1 TIGRFAM: Flagellar protein export ATPase, FliI; ATPase, type III secretion system, FliI/YscN; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; KEGG: spe:Spro_2950 flagellum-specific ATP synthase; SMART: ATPase, AAA+ type, core YP_004506414.1 TIGRFAM: Flagellar export FliJ; KEGG: spe:Spro_2951 flagellar biosynthesis chaperone YP_004506415.1 PFAM: Flagellar hook-length control protein; KEGG: spe:Spro_2952 flagellar hook-length control protein YP_004506417.1 PFAM: Flagellar basal body-associated protein FliL; KEGG: spe:Spro_2953 flagellar basal body-associated protein FliL YP_004506418.1 KEGG: spe:Spro_2954 flagellar motor switch protein FliM; TIGRFAM: Flagellar motor switch protein FliM; PFAM: Flagellar motor switch protein FliM; Surface presentation of antigen (SpoA) YP_004506419.1 KEGG: spe:Spro_2955 flagellar motor switch protein FliN; TIGRFAM: Flagellar motor switch FliN; PFAM: Surface presentation of antigen (SpoA) YP_004506420.1 KEGG: spe:Spro_2956 flagellar biosynthesis protein FliO; TIGRFAM: Flagellar biosynthesis protein, FliO; PFAM: Flagellar biosynthesis protein, FliO YP_004506421.1 KEGG: spe:Spro_2957 flagellar biosynthesis protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein YP_004506422.1 KEGG: spe:Spro_2958 flagellar biosynthesis protein FliQ; TIGRFAM: Flagellar biosynthesis protein FliQ; PFAM: Bacterial export protein FliQ, family 3 YP_004506423.1 KEGG: spe:Spro_2959 flagellar biosynthesis protein FliR; TIGRFAM: Flagellar biosynthesis protein FliR; PFAM: Type III secretion system inner membrane R protein YP_004506427.1 KEGG: spe:Spro_2960 flagellar hook-associated protein 3; TIGRFAM: Flagellar hook-associated protein 3; PFAM: Flagellin, N-terminal YP_004506428.1 KEGG: spe:Spro_2961 flagellar hook-associated protein FlgK; TIGRFAM: Flagellar hook-associated protein, FlgK; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004506429.1 TIGRFAM: Flagellar protein FlgJ type-2; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ, N-terminal; KEGG: spe:Spro_2962 flagellar rod assembly protein/muramidase FlgJ; SMART: Lysozyme subfamily 2 YP_004506430.1 KEGG: spe:Spro_2963 flagellar basal body P-ring protein; HAMAP: Flagellar P-ring protein; PFAM: Flagellar P-ring protein YP_004506431.1 KEGG: spe:Spro_2964 flagellar basal body L-ring protein; HAMAP: Flagellar L-ring protein; PFAM: Flagellar L-ring protein YP_004506432.1 KEGG: spe:Spro_2965 flagellar basal body rod protein FlgG; TIGRFAM: Flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal YP_004506433.1 KEGG: spe:Spro_2966 flagellar basal body rod protein FlgF; TIGRFAM: Flagellar basal-body rod FlgF; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body rod protein, N-terminal YP_004506434.1 KEGG: spe:Spro_2967 flagellar hook protein FlgE; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body FlaE; Flagellar basal body rod protein, N-terminal; Protein of unknown function DUF1078, C-terminal YP_004506435.1 PFAM: Flagellar hook capping protein; KEGG: spe:Spro_2968 flagellar basal body rod modification protein YP_004506436.1 KEGG: spe:Spro_2969 flagellar basal body rod protein FlgC; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Flagellar basal body rod protein, N-terminal; Protein of unknown function DUF1078, C-terminal YP_004506437.1 KEGG: spe:Spro_2970 flagellar basal body rod protein FlgB; TIGRFAM: Flagellar basal-body rod protein FlgB; PFAM: Flagellar basal body rod protein, N-terminal YP_004506438.1 KEGG: spe:Spro_2971 SAF domain-containing protein; TIGRFAM: Flagella basal body P-ring formation protein FlgA; PFAM: SAF domain YP_004506439.1 KEGG: spe:Spro_2972 anti-sigma28 factor FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor protein FlgM; PFAM: Anti-sigma-28 factor, FlgM YP_004506440.1 PFAM: FlgN; KEGG: spe:Spro_2973 FlgN family protein YP_004506441.1 PFAM: Protein of unknown function DUF1044; KEGG: ajs:Ajs_2626 hypothetical protein YP_004506442.1 PFAM: Protein of unknown function DUF1044 YP_004506443.1 PFAM: Helix-turn-helix type 3; KEGG: spe:Spro_2974 XRE family transcriptional regulator YP_004506444.1 PFAM: Flagellar FlhE; KEGG: spe:Spro_2975 flagellar FlhE family protein YP_004506445.1 KEGG: spe:Spro_2976 flagellar biosynthesis protein FlhA; TIGRFAM: Flagellar biosynthesis protein FlhA; PFAM: Type III secretion system FHIPEP YP_004506446.1 KEGG: spe:Spro_2977 flagellar biosynthesis protein FlhB; TIGRFAM: Flagellar biosynthetic protein FlhB; PFAM: Type III secretion exporter YP_004506447.1 PFAM: Chemotaxis phosphatase, CheZ; KEGG: spe:Spro_2978 chemotaxis regulator CheZ YP_004506448.1 KEGG: spe:Spro_2979 chemotaxis regulatory protein CheY; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004506449.1 SMART: Signal transduction response regulator, receiver region; HAMAP: Chemotaxis response regulator protein-glutamate methylesterase; KEGG: spe:Spro_2980 chemotaxis-specific methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver region YP_004506450.1 PFAM: MCP methyltransferase, CheR-type; KEGG: spe:Spro_2981 chemotaxis methyltransferase CheR; SMART: MCP methyltransferase, CheR-type YP_004506451.1 KEGG: spe:Spro_2982 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; Chemotaxis methyl-accepting receptor, ligand-binding; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; Chemotaxis methyl-accepting receptor, ligand-binding; HAMP linker domain YP_004506452.1 KEGG: spe:Spro_2983 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; Chemotaxis methyl-accepting receptor, ligand-binding; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; Chemotaxis methyl-accepting receptor, ligand-binding; HAMP linker domain YP_004506454.1 KEGG: spe:Spro_2984 purine-binding chemotaxis protein; PFAM: CheW-like protein; SMART: CheW-like protein YP_004506455.1 KEGG: spe:Spro_2985 chemotaxis protein CheA; PFAM: CheY binding; Signal transduction histidine kinase, phosphotransfer (Hpt) region; Signal transduction histidine kinase, subgroup, homodimeric; ATP-binding region, ATPase-like; CheW-like protein; SMART: CheW-like protein; Signal transduction histidine kinase, phosphotransfer (Hpt) region; ATP-binding region, ATPase-like YP_004506456.1 TIGRFAM: flagellar motor stator protein MotA; KEGG: spe:Spro_2987 flagellar motor protein MotA YP_004506457.1 PFAM: Flagellar transcriptional activator FlhC; KEGG: spe:Spro_2988 transcriptional activator FlhC YP_004506458.1 KEGG: spe:Spro_2989 transcriptional activator FlhD; HAMAP: Transcriptional activator FlhD; PFAM: Flagellar transcriptional activator YP_004506459.1 PFAM: Haemolysin expression modulating, HHA; KEGG: spe:Spro_2990 hemolysin expression modulating family protein YP_004506460.1 PFAM: UspA; KEGG: spe:Spro_2991 universal stress protein UspC YP_004506461.1 KEGG: spe:Spro_2992 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding YP_004506462.1 PFAM: Bacterial transcription activator, effector binding; KEGG: spe:Spro_3021 DNA gyrase inhibitor YP_004506463.1 KEGG: spe:Spro_3022 tryptophan 23-dioxygenase; TIGRFAM: Tryptophan 2,3-dioxygenase, bacteria; PFAM: Tryptophan 2,3-dioxygenase YP_004506464.1 KEGG: kpe:KPK_A0149 hypothetical protein YP_004506466.1 KEGG: pva:Pvag_1214 UmuC protein; PFAM: DNA-repair protein, UmuC-like YP_004506467.1 KEGG: mar:MAE_36710 hypothetical protein YP_004506468.1 PFAM: Major facilitator superfamily MFS-1; KEGG: kpu:KP1_2796 permease of the major facilitator superfamily YP_004506469.1 KEGG: pam:PANA_0337 DsbG YP_004506470.1 KEGG: pap:PSPA7_4153 hypothetical protein YP_004506471.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: ebi:EbC_25470 DNA polymerase V, subunit D YP_004506472.1 KEGG: enc:ECL_00718 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004506473.1 KEGG: ebi:EbC_06430 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1 YP_004506474.1 PFAM: Protein of unknown function DUF894, DitE; KEGG: ebi:EbC_06440 major facilitator superfamily protein YP_004506475.1 PFAM: DoxX; KEGG: pao:Pat9b_1933 DoxX family protein YP_004506476.1 PFAM: Amidohydrolase 3; KEGG: pao:Pat9b_1932 amidohydrolase 3 YP_004506477.1 PFAM: Isochorismatase-like; KEGG: enc:ECL_00713 isochorismatase hydrolase YP_004506478.1 KEGG: enc:ECL_00714 hypothetical protein; TIGRFAM: XapX domain; PFAM: Protein of unknown function DUF1427 YP_004506479.1 KEGG: enc:ECL_00715 hypothetical protein; TIGRFAM: XapX domain; PFAM: Protein of unknown function DUF1427 YP_004506480.1 KEGG: enc:ECL_00716 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004506481.1 PFAM: ATP-binding region, ATPase-like; Serine/threonine-protein kinase-like domain; GAF; PAS fold-3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: enc:ECL_00717 PAS sensor protein; SMART: ATP-binding region, ATPase-like; GAF; Serine/threonine-protein kinase domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004506482.1 TIGRFAM: Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR; PFAM: Transcriptional regulator IclR, C-terminal; Transcriptional regulator IclR, N-terminal; KEGG: spe:Spro_3036 IclR family transcriptional regulator; SMART: Transcriptional regulator IclR, N-terminal YP_004506483.1 TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: spe:Spro_3037 3-oxoacid CoA-transferase, subunit A; PFAM: Coenzyme A transferase YP_004506484.1 TIGRFAM: 3-oxoacid CoA-transferase, subunit B; KEGG: spe:Spro_3038 3-oxoacid CoA-transferase, subunit B; PFAM: Coenzyme A transferase YP_004506485.1 KEGG: spe:Spro_3039 beta-ketoadipyl CoA thiolase; TIGRFAM: Beta-ketoadipyl CoA thiolase; Thiolase YP_004506486.1 TIGRFAM: 3-oxoadipate enol-lactonase; KEGG: spe:Spro_3040 3-oxoadipate enol-lactonase; PFAM: Alpha/beta hydrolase fold-1 YP_004506487.1 TIGRFAM: Arsenate reductase; KEGG: enc:ECL_00465 arsenate reductase; PFAM: Arsenate reductase-like YP_004506488.1 KEGG: spc:Sputcn32_3829 arsenical pump membrane protein; TIGRFAM: Arsenical pump membrane protein; PFAM: Arsenical pump membrane protein YP_004506489.1 KEGG: enc:ECL_00470 arsenical resistance operon repressor; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004506490.1 TIGRFAM: Carboxylate-amine ligase, predicted; HAMAP: Carboxylate-amine ligase ybdK; KEGG: cko:CKO_00830 hypothetical protein; PFAM: Glutamate--cysteine ligase, GCS2 YP_004506491.1 KEGG: spe:Spro_3041 hypothetical protein YP_004506492.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dda:Dd703_2133 LysR family transcriptional regulator YP_004506493.1 PFAM: Protein of unknown function DUF606; KEGG: cvi:CV_3483 hypothetical protein YP_004506494.1 PFAM: Protein of unknown function DUF606; KEGG: cvi:CV_3484 hypothetical protein YP_004506495.1 KEGG: spe:Spro_3042 hypothetical protein YP_004506496.1 KEGG: spe:Spro_3043 hypothetical protein YP_004506497.1 TIGRFAM: ATPase, P-type, magnesium-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: spe:Spro_3044 magnesium-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal YP_004506498.1 PFAM: MgtC/SapB transporter; KEGG: spe:Spro_3045 MgtC/SapB transporter YP_004506499.1 KEGG: spe:Spro_3046 hypothetical protein YP_004506500.1 PFAM: CoA-transferase III; KEGG: spe:Spro_3047 L-carnitine dehydratase/bile acid-inducible protein F YP_004506501.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3048 LysR family transcriptional regulator YP_004506502.1 KEGG: spe:Spro_3049 pyridoxal-dependent decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase YP_004506503.1 KEGG: spe:Spro_3050 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004506504.1 KEGG: spe:Spro_3051 hypothetical protein; HAMAP: Dextransucrase DSRB; PFAM: Dextransucrase DSRB YP_004506505.1 KEGG: spe:Spro_3052 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004506506.1 KEGG: spe:Spro_3054 hypothetical protein YP_004506508.1 KEGG: spe:Spro_3055 hypothetical protein YP_004506509.1 TIGRFAM: Quinone oxidoreductase , PIG3; KEGG: spe:Spro_3056 quinone oxidoreductase PIG3; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004506510.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: spe:Spro_3057 endonuclease/exonuclease/phosphatase YP_004506511.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: spe:Spro_3058 NAD-dependent epimerase/dehydratase YP_004506512.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3059 LysR family transcriptional regulator YP_004506513.1 PFAM: Protein of unknown function DUF937, bacterial; KEGG: spe:Spro_3060 hypothetical protein YP_004506514.1 PFAM: Transglycosylase-associated protein; KEGG: spe:Spro_3061 hypothetical protein YP_004506515.1 PFAM: Protein of unknown function DUF883, ElaB; KEGG: rah:Rahaq_0768 hypothetical protein YP_004506516.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3062 LysR family transcriptional regulator YP_004506517.1 KEGG: spe:Spro_3063 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004506518.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: spe:Spro_3064 3-demethylubiquinone-9 3-methyltransferase YP_004506519.1 KEGG: spe:Spro_3065 hypothetical protein YP_004506520.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: spe:Spro_3068 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004506521.1 TIGRFAM: Phenylacetic acid degradation protein paaN; KEGG: spe:Spro_3071 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; PFAM: MaoC-like dehydratase; Aldehyde dehydrogenase YP_004506522.1 KEGG: spe:Spro_3072 phenylacetate-CoA oxygenase subunit PaaA; TIGRFAM: Phenylacetate-CoA oxygenase, PaaG subunit; PFAM: Phenylacetic acid catabolic YP_004506523.1 KEGG: spe:Spro_3073 phenylacetate-CoA oxygenase subunit PaaB; TIGRFAM: Phenylacetic acid degradation B; PFAM: Phenylacetic acid degradation B YP_004506524.1 KEGG: spe:Spro_3074 phenylacetate-CoA oxygenase, PaaI subunit; TIGRFAM: Phenylacetate-CoA oxygenase, PaaI subunit; PFAM: Phenylacetic acid catabolic YP_004506525.1 KEGG: spe:Spro_3075 phenylacetate-CoA oxygenase, PaaJ subunit; TIGRFAM: Phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: Protein of unknown function DUF59 YP_004506526.1 KEGG: spe:Spro_3076 phenylacetate-CoA oxygenase/reductase subunit PaaK; TIGRFAM: Phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: Ferredoxin; Oxidoreductase FAD-binding region; Oxidoreductase FAD/NAD(P)-binding YP_004506527.1 PFAM: Crotonase, core; KEGG: spe:Spro_3077 enoyl-CoA hydratase-isomerase YP_004506528.1 KEGG: spe:Spro_3078 enoyl-CoA hydratase; TIGRFAM: Phenylacetate degradation probable enoyl-CoA hydratase paaB; PFAM: Crotonase, core YP_004506529.1 KEGG: spe:Spro_3079 3-hydroxy-acyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004506530.1 KEGG: spe:Spro_3080 phenylacetic acid degradation protein PaaD; TIGRFAM: Phenylacetic acid degradation protein PaaD; Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily YP_004506532.1 TIGRFAM: Phenylacetate-CoA ligase; KEGG: spe:Spro_3082 phenylacetate-CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004506533.1 KEGG: spe:Spro_3083 PaaX family transcriptional regulator; TIGRFAM: Phenylacetic acid degradation operon negative regulatory protein paaX; PFAM: PaaX-like, C-terminal; PaaX-like, N-terminal YP_004506534.1 KEGG: spe:Spro_3084 phenylacetic acid degradation protein PaaY; TIGRFAM: Phenylacetic acid degradation protein PaaY; PFAM: Bacterial transferase hexapeptide repeat YP_004506535.1 KEGG: bam:Bamb_4617 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR YP_004506536.1 KEGG: acd:AOLE_07670 AraC family transcription regulator; PFAM: Helix-turn-helix, AraC type; ThiJ/PfpI; SMART: Helix-turn-helix, AraC domain YP_004506537.1 KEGG: pao:Pat9b_1286 hypothetical protein YP_004506538.1 PFAM: Protein of unknown function DUF6, transmembrane; Na+/H+ antiporter NhaC-like; KEGG: spe:Spro_3086 hypothetical protein YP_004506539.1 PFAM: Amino acid permease-associated region; KEGG: spe:Spro_3087 amino acid permease-associated protein YP_004506540.1 KEGG: spe:Spro_3088 aromatic amino acid aminotransferase; PFAM: Aminotransferase, class I/II YP_004506541.1 PFAM: Endoribonuclease L-PSP; KEGG: spe:Spro_3089 endoribonuclease L-PSP YP_004506542.1 KEGG: spe:Spro_3090 esterase/lipase-like protein YP_004506543.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3091 LysR family transcriptional regulator YP_004506544.1 PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: spe:Spro_3092 glutathione S-transferase domain-containing protein YP_004506545.1 PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: spe:Spro_3093 pyridoxamine 5'-phosphate oxidase-like protein YP_004506546.1 KEGG: spe:Spro_3094 glycogen synthesis protein YP_004506547.1 TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: spe:Spro_3095 succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004506548.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: spe:Spro_3096 glyoxalase/bleomycin resistance protein/dioxygenase YP_004506549.1 PFAM: Cupin 2, conserved barrel; KEGG: spe:Spro_3098 cupin 2 domain-containing protein YP_004506550.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3099 LysR family transcriptional regulator YP_004506551.1 TIGRFAM: Amino acid adenylation; KEGG: eta:ETA_29170 similar to bacitracin synthetase 1 (BA1), protein contains non-ribosomal peptide synthetase modules; PFAM: AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding; Thioesterase YP_004506552.1 SMART: Pyrrolo-quinoline quinone beta-propeller repeat; TIGRFAM: PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate related; KEGG: spe:Spro_3100 quinoprotein glucose dehydrogenase; PFAM: PQQ-dependent enzyme, N-terminal; Pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal YP_004506553.1 PFAM: Phosphoglycerate mutase; KEGG: esa:ESA_pESA3p05525 hypothetical protein YP_004506554.1 KEGG: spe:Spro_3102 major facilitator superfamily oligosaccharide/H+ symporter; TIGRFAM: Proton/sugar symporter, LacY; PFAM: Proton/sugar symporter, LacY YP_004506555.1 KEGG: spe:Spro_3103 glycoside hydrolase; PFAM: Glycoside hydrolase, family 4 YP_004506556.1 KEGG: spe:Spro_3104 AraC family transcriptional regulator; PFAM: AraC protein, arabinose-binding/dimerisation; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004506557.1 KEGG: spe:Spro_3106 hypothetical protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: Multi antimicrobial extrusion protein MatE YP_004506558.1 KEGG: pfl:PFL_2254 hypothetical protein YP_004506559.1 KEGG: sme:SMa1067 transcriptional regulator; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding YP_004506560.1 KEGG: sme:SMa1067 transcriptional regulator; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding YP_004506561.1 KEGG: spe:Spro_3110 hypothetical protein; HAMAP: Protein mtfA; PFAM: Protein of unknown function DUF980 YP_004506562.1 KEGG: spe:Spro_3182 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004506563.1 KEGG: ent:Ent638_2279 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004506564.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rah:Rahaq_1903 short-chain dehydrogenase/reductase SDR YP_004506565.1 KEGG: rah:Rahaq_1902 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004506566.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: spe:Spro_3184 TetR family transcriptional regulator YP_004506567.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: rah:Rahaq_1650 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004506568.1 KEGG: pfl:PFL_0319 hypothetical protein YP_004506569.1 PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; KEGG: pfl:PFL_0320 acid phosphatase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase YP_004506570.1 PFAM: MltA-interacting MipA; KEGG: pfl:PFL_0321 hypothetical protein YP_004506572.1 PFAM: Protein of unknown function DUF1214; Protein of unknown function DUF1254; KEGG: pfl:PFL_0322 hypothetical protein YP_004506573.1 KEGG: pva:Pvag_pPag30129 hypothetical protein YP_004506574.1 KEGG: pao:Pat9b_5352 alcohol dehydrogenase zinc-binding domain-containing protein; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding YP_004506575.1 PFAM: Biotin/lipoate A/B protein ligase; KEGG: kpn:KPN_02459 lipoate-protein ligase A YP_004506576.1 KEGG: epy:EpC_14400 transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004506577.1 KEGG: spe:Spro_3114 LacI family transcription regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004506578.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: spe:Spro_3115 extracellular solute-binding protein YP_004506579.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_3116 binding-protein-dependent transport systems inner membrane component YP_004506580.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: spe:Spro_3117 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004506581.1 PFAM: Inositol monophosphatase; KEGG: spe:Spro_3118 inositol-phosphate phosphatase YP_004506582.1 TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: spe:Spro_3119 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004506583.1 KEGG: spe:Spro_3120 AraC family transcriptional regulator; PFAM: ThiJ/PfpI; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004506584.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: xfa:XF1741 daunorubicin C-13 ketoreductase YP_004506585.1 PFAM: Luciferase-like, subgroup; KEGG: spe:Spro_3121 luciferase YP_004506586.1 PFAM: TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C; KEGG: spe:Spro_3122 TenA family transcription regulator YP_004506587.1 PFAM: ABC transporter-like; KEGG: spe:Spro_3123 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004506588.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_3124 binding-protein-dependent transport systems inner membrane component YP_004506589.1 KEGG: spe:Spro_3125 NMT1/THI5-like domain-containing protein YP_004506590.1 KEGG: met:M446_1628 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004506591.1 KEGG: spe:Spro_3126 phosphoglycerol transferase I; PFAM: Sulfatase YP_004506592.1 TIGRFAM: AMP nucleosidase; KEGG: spe:Spro_3127 AMP nucleosidase; PFAM: AMP nucleoside phosphorylase, N-terminal; Nucleoside phosphorylase YP_004506593.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3129 nitrogen assimilation transcriptional regulator YP_004506594.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dze:Dd1591_2458 short-chain dehydrogenase/reductase SDR YP_004506595.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dze:Dd1591_2459 TetR family transcriptional regulator YP_004506596.1 PFAM: Helix-turn-helix, AraC type; KEGG: ctu:Ctu_06220 right origin-binding protein YP_004506597.1 KEGG: eca:ECA1481 hypothetical protein YP_004506598.1 KEGG: pwa:Pecwa_2845 hypothetical protein YP_004506599.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3131 LysR family transcriptional regulator YP_004506600.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_3132 major facilitator transporter YP_004506601.1 PFAM: Helix-turn-helix, HxlR type; KEGG: bxe:Bxe_B1101 transcriptional regulator YP_004506602.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: bxe:Bxe_B1098 reductase YP_004506603.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: bxe:Bxe_B1099 epimerase/dehydratase YP_004506604.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: bpy:Bphyt_5762 NADP oxidoreductase coenzyme F420-dependent YP_004506605.1 KEGG: mes:Meso_1112 cystathionine beta-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004506606.1 PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; KEGG: hoh:Hoch_6148 ATP-dependent carboxylate-amine ligase domain protein ATP-grasp YP_004506607.1 KEGG: hoh:Hoch_1307 hypothetical protein YP_004506608.1 PFAM: Rhodanese-like; KEGG: ttu:TERTU_4548 rhodanese domain-containing protein; SMART: Rhodanese-like YP_004506609.1 PFAM: Major facilitator superfamily MFS-1; KEGG: plu:plu0117 hypothetical protein YP_004506610.1 PFAM: Protein of unknown function DUF1234; KEGG: rah:Rahaq_2328 hypothetical protein YP_004506611.1 KEGG: rah:Rahaq_2329 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004506612.1 KEGG: bxe:Bxe_C0717 hypothetical protein YP_004506613.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pam:PANA_4100 RhtC YP_004506614.1 KEGG: pct:PC1_3494 hypothetical protein YP_004506615.1 KEGG: ddd:Dda3937_04144 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal YP_004506616.1 PFAM: Protein of unknown function DUF1852; KEGG: spe:Spro_3175 hypothetical protein YP_004506617.1 KEGG: rah:Rahaq_4623 methionine synthase; PFAM: Methionine synthase, vitamin-B12 independent YP_004506618.1 KEGG: eca:ECA2924 lipoprotein YP_004506619.1 KEGG: pao:Pat9b_4510 PEBP family protein; TIGRFAM: YbhB/YbcL; PFAM: Phosphatidylethanolamine-binding protein PEBP YP_004506620.1 KEGG: pao:Pat9b_4509 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004506621.1 KEGG: spe:Spro_3179 major facilitator superfamily metabolite/H(+) symporter; TIGRFAM: Citrate-proton symport; PFAM: General substrate transporter YP_004506622.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: spe:Spro_3180 extracellular solute-binding protein YP_004506623.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3181 LysR family transcriptional regulator YP_004506624.1 PFAM: Periplasmic binding protein; KEGG: spe:Spro_2539 periplasmic binding protein YP_004506625.1 KEGG: bra:BRADO0019 hypothetical protein YP_004506626.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: cak:Caul_0455 LysR family transcriptional regulator YP_004506627.1 PFAM: Restriction endonuclease, type IV-like, Mrr; KEGG: hse:Hsero_2806 mrr restriction system protein YP_004506628.1 KEGG: seh:SeHA_C2938 hypothetical protein YP_004506630.1 PFAM: Sugar isomerase (SIS); Helix-turn-helix protein RpiR; KEGG: pao:Pat9b_5741 transcriptional regulator, RpiR family YP_004506631.1 KEGG: rah:Rahaq_5040 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004506632.1 KEGG: kva:Kvar_2733 oligosaccharide/H+ symporter, major facilitator superfamily (MFS); TIGRFAM: Proton/sugar symporter, LacY; PFAM: Proton/sugar symporter, LacY YP_004506633.1 KEGG: kva:Kvar_2732 glycoside hydrolase 2 TIM barrel; HAMAP: Beta-galactosidase; PFAM: Glycoside hydrolase 2, TIM barrel; Glycoside hydrolase 2, carbohydrate-binding; Glycoside hydrolase 2, immunoglobulin-like beta-sandwich; Glycoside hydrolase, family 42, domain 5 YP_004506634.1 KEGG: kva:Kvar_2731 transcriptional regulator, LacI family; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004506635.1 KEGG: dda:Dd703_3132 histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004506636.1 PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; KEGG: bgl:bglu_1g22930 two component transcriptional regulator, LuxR family protein YP_004506637.1 KEGG: ddd:Dda3937_01471 phosphate regulon transcriptional regulatory protein PhoB; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004506638.1 PFAM: Protein of unknown function DUF606; KEGG: ent:Ent638_2105 hypothetical protein YP_004506639.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dvm:DvMF_0463 GCN5-related N-acetyltransferase YP_004506640.1 KEGG: ara:Arad_2927 transcriptional regulator protein; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3 YP_004506641.1 PFAM: Nitroreductase-like; KEGG: spe:Spro_3146 nitroreductase YP_004506642.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3147 LysR family transcriptional regulator YP_004506643.1 PFAM: NADPH-dependent FMN reductase; KEGG: spe:Spro_3148 NAD(P)H dehydrogenase (quinone) YP_004506644.1 PFAM: Glycosyl transferase, family 9; KEGG: spe:Spro_3149 glycosyl transferase YP_004506645.1 PFAM: O-antigen ligase-related; KEGG: spe:Spro_3150 O-antigen polymerase YP_004506646.1 KEGG: spe:Spro_3151 lipopolysaccharide glycosyltransferase YP_004506647.1 TIGRFAM: Alkanesulphonate monooxygenase, FMN-dependent; KEGG: pva:Pvag_pPag10058 alkanesulfonate monooxygenase; PFAM: Luciferase-like, subgroup YP_004506648.1 TIGRFAM: ABC transporter, substrate-binding protein, aliphatic sulphonates; PFAM: RNA polymerase sigma factor 54, interaction; NMT1/THI5 like; KEGG: ebi:EbC_20690 ABC-like transporter, ATPase subunit; SMART: Extracellular solute-binding protein, family 3; ATPase, AAA+ type, core YP_004506649.1 KEGG: spe:Spro_3152 peroxidase-like protein; TIGRFAM: Uncharacterised peroxidase-related; Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase YP_004506650.1 PFAM: Luciferase-like, subgroup; KEGG: spe:Spro_3153 luciferase YP_004506651.1 PFAM: ABC transporter-like; KEGG: spe:Spro_3154 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004506652.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_3155 binding-protein-dependent transport systems inner membrane component YP_004506653.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_3156 binding-protein-dependent transport systems inner membrane component YP_004506654.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: spe:Spro_3157 extracellular solute-binding protein YP_004506655.1 KEGG: spe:Spro_3158 hypothetical protein YP_004506656.1 PFAM: Threonyl/alanyl tRNA synthetase, SAD; KEGG: spe:Spro_3159 threonyl/alanyl tRNA synthetase SAD YP_004506657.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3160 LysR family transcriptional regulator YP_004506658.1 PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: spe:Spro_3161 2OG-Fe(II) oxygenase YP_004506659.1 TIGRFAM: RarD protein; KEGG: spe:Spro_3162 transporter DMT superfamily protein YP_004506660.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: spe:Spro_3163 4'-phosphopantetheinyl transferase YP_004506661.1 KEGG: spe:Spro_3164 glucose-1-phosphatase/inositol phosphatase; PFAM: Histidine acid phosphatase YP_004506662.1 KEGG: spe:Spro_3165 anion transporter; TIGRFAM: Sodium/sulphate symporter; PFAM: Sodium/sulphate symporter YP_004506663.1 TIGRFAM: Triphosphoribosyl-dephospho-CoA synthase, CitG; KEGG: spe:Spro_3166 triphosphoribosyl-dephospho-CoA synthase; PFAM: Triphosphoribosyl-dephospho-CoA protein YP_004506664.1 TIGRFAM: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; KEGG: spe:Spro_3167 holo-ACP synthase; PFAM: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase YP_004506665.1 TIGRFAM: Citrate lyase, alpha subunit; KEGG: spe:Spro_3168 citrate lyase subunit alpha; PFAM: Citrate lyase, alpha subunit YP_004506666.1 TIGRFAM: Citrate lyase, beta subunit, bacteria; KEGG: spe:Spro_3169 citrate lyase subunit beta; PFAM: HpcH/HpaI aldolase YP_004506667.1 TIGRFAM: Citrate lyase acyl carrier protein CitD; HAMAP: Citrate lyase acyl carrier protein; KEGG: spe:Spro_3170 citrate lyase subunit gamma; PFAM: Citrate lyase acyl carrier protein CitD YP_004506668.1 SMART: Citrate lyase ligase, C-terminal; TIGRFAM: Citrate lyase ligase; Cytidyltransferase-related; KEGG: spe:Spro_3171 citrate lyase ligase; PFAM: Citrate lyase ligase, C-terminal; GCN5-related N-acetyltransferase YP_004506669.1 KEGG: spe:Spro_3172 response regulator receiver/unknown domain-containing protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004506670.1 KEGG: bam:Bamb_0730 hypothetical protein YP_004506671.1 KEGG: bcj:BCAL3148 hypothetical protein YP_004506672.1 TIGRFAM: Acetoin reductase; KEGG: pmr:PMI2092 acetoin(diacetyl) reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004506673.1 TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: kva:Kvar_4124 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004506674.1 PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; KEGG: kpu:KP1_1117 dihydrolipoamide acetyltransferase YP_004506675.1 KEGG: kpu:KP1_1118 acetoin:DCPIP oxidoreductase beta subunit; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal YP_004506676.1 KEGG: kva:Kvar_4121 pyruvate dehydrogenase (acetyl-transferring); PFAM: Dehydrogenase, E1 component YP_004506677.1 KEGG: kpu:KP1_1121 trans-acting regulatory protein of aco operon; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004506678.1 PFAM: Protein of unknown function DUF1440; KEGG: sea:SeAg_B4667 inner membrane protein YagU YP_004506679.1 PFAM: Haem peroxidase, plant/fungal/bacterial; TIGRFAM: Catalase-peroxidase haem; HAMAP: Catalase-peroxidase haem; KEGG: spe:Spro_3192 catalase/peroxidase HPI YP_004506680.1 PFAM: HipA-like, C-terminal; HipA-like, N-terminal; KEGG: vvm:VVM_02072 HipA protein YP_004506681.1 manually curated; PFAM: Helix-turn-helix type 3; KEGG: vvu:VV1_2191 hypothetical protein; SMART: Helix-turn-helix type 3 YP_004506682.1 KEGG: ddc:Dd586_2655 AraC family transcriptional regulator; PFAM: AraC-type transcriptional regulator, N-terminal; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004506683.1 PFAM: Flavodoxin-like fold; KEGG: ddc:Dd586_2654 NAD(P)H dehydrogenase (quinone) YP_004506684.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pst:PSPTO_3196 LysR family transcriptional regulator YP_004506685.1 PFAM: Major facilitator superfamily MFS-1; KEGG: psb:Psyr_3063 major facilitator transporter YP_004506686.1 KEGG: spe:Spro_3194 sugar efflux transporter; HAMAP: sugar efflux transporter; PFAM: Major facilitator superfamily MFS-1 YP_004506687.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: spe:Spro_3198 aspartyl/asparaginyl beta-hydroxylase YP_004506688.1 PFAM: ABC transporter-like; KEGG: spe:Spro_3199 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004506689.1 PFAM: ABC transporter-like; KEGG: spe:Spro_3200 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004506690.1 PFAM: Bacterial inner-membrane translocator; KEGG: spe:Spro_3201 inner-membrane translocator YP_004506691.1 PFAM: Bacterial inner-membrane translocator; KEGG: spe:Spro_3202 inner-membrane translocator YP_004506692.1 PFAM: Extracellular ligand-binding receptor; KEGG: spe:Spro_3203 extracellular ligand-binding receptor YP_004506694.1 KEGG: cti:pRALTA_0597 hypothetical protein YP_004506695.1 KEGG: kva:Kvar_2758 transcriptional regulator, LysR family; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR YP_004506696.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: kva:Kvar_2759 carboxymuconolactone decarboxylase YP_004506697.1 PFAM: Major facilitator superfamily MFS-1; KEGG: bam:Bamb_1996 major facilitator transporter YP_004506698.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bam:Bamb_1994 LysR family transcriptional regulator YP_004506700.1 KEGG: rah:Rahaq_2364 phenylalanine/histidine ammonia-lyase; PFAM: Phenylalanine/histidine ammonia-lyase YP_004506701.1 PFAM: ABC-type glycine betaine transport system, substrate-binding region; KEGG: rah:Rahaq_2365 substrate-binding region of ABC-type glycine betaine transport system YP_004506702.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rah:Rahaq_2366 binding-protein-dependent transport systems inner membrane component YP_004506703.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rah:Rahaq_2367 binding-protein-dependent transport systems inner membrane component YP_004506704.1 PFAM: ABC transporter-like; KEGG: rah:Rahaq_2368 ABC transporter; SMART: ATPase, AAA+ type, core YP_004506705.1 KEGG: eca:ECA2927 transporter; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004506706.1 PFAM: Acriflavin resistance protein; KEGG: rah:Rahaq_1909 acriflavin resistance protein YP_004506707.1 KEGG: rah:Rahaq_1908 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004506708.1 KEGG: pct:PC1_2679 transcriptional regulator, TetR family; manually curated; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal YP_004506709.1 KEGG: rah:Rahaq_1906 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004506710.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: rah:Rahaq_1905 NADP oxidoreductase coenzyme F420-dependent YP_004506711.1 PFAM: Helix-turn-helix, HxlR type; KEGG: eca:ECA2934 transcriptional regulator YP_004506712.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: eca:ECA2935 hypothetical protein YP_004506713.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3205 LysR family transcriptional regulator YP_004506714.1 TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: spe:Spro_3206 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004506715.1 KEGG: spe:Spro_3207 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004506716.1 KEGG: spe:Spro_3208 hypothetical protein; HAMAP: Protein of unknown function DUF496; PFAM: Protein of unknown function DUF496 YP_004506717.1 KEGG: spe:Spro_3209 hypothetical protein YP_004506718.1 KEGG: spe:Spro_3210 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2 YP_004506719.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: spe:Spro_3211 phage repressor YP_004506720.1 PFAM: Male sterility, NAD-binding; KEGG: spe:Spro_3212 hypothetical protein YP_004506722.1 PFAM: DNA polymerase III-theta, bacterial; KEGG: spe:Spro_3213 hypothetical protein YP_004506723.1 PFAM: Exonuclease C-terminal; Exonuclease, RNase T/DNA polymerase III; KEGG: spe:Spro_3214 exonuclease I; SMART: Exonuclease YP_004506725.1 PFAM: Amino acid permease-associated region; KEGG: spe:Spro_3215 amino acid permease-associated protein YP_004506726.1 KEGG: yen:YE2760 hypothetical protein YP_004506727.1 KEGG: spe:Spro_3216 glutamine synthetase catalytic region; PFAM: Glutamine synthetase, catalytic region YP_004506728.1 KEGG: spe:Spro_3217 DNA-binding transcriptional repressor PuuR; PFAM: Cupin 2, conserved barrel; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004506729.1 PFAM: FAD dependent oxidoreductase; KEGG: pao:Pat9b_2557 FAD dependent oxidoreductase YP_004506730.1 PFAM: ABC transporter-like; KEGG: spe:Spro_3218 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004506731.1 PFAM: Bacterial inner-membrane translocator; KEGG: spe:Spro_3219 monosaccharide-transporting ATPase YP_004506732.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: spe:Spro_3220 outer membrane receptor YP_004506733.1 PFAM: ABC transporter-like; KEGG: spe:Spro_3221 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004506734.1 PFAM: Bacterial transport system permease; KEGG: spe:Spro_3222 transport system permease YP_004506735.1 KEGG: spe:Spro_3223 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; SMART: Diguanylate cyclase, predicted YP_004506736.1 PFAM: Amino acid permease-associated region; KEGG: spe:Spro_3224 lysine transporter YP_004506737.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3225 DNA-binding transcriptional regulator YP_004506738.1 KEGG: spe:Spro_3226 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0324, bacteria; PFAM: Uncharacterised protein family UPF0324, prokaryote YP_004506739.1 KEGG: spe:Spro_3227 endonuclease IV; PFAM: Xylose isomerase, TIM barrel domain; TIGRFAM: Endodeoxyribonuclease IV; HAMAP: Endodeoxyribonuclease IV; SMART: Endodeoxyribonuclease IV YP_004506740.1 TIGRFAM: Phosphotransferase system, fructose IIC component; Phosphotransferase system, fructose-specific IIB subunit; KEGG: spe:Spro_3228 PTS system fructose-specific transporter subunits IIBC; PFAM: Phosphotransferase system, fructose-specific IIB subunit; Phosphotransferase system, EIIC YP_004506741.1 TIGRFAM: 1-phosphofructokinase; 1-phosphofructokinase; KEGG: spe:Spro_3229 1-phosphofructokinase; PFAM: Carbohydrate/purine kinase YP_004506742.1 KEGG: spe:Spro_3230 bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; Phosphotransferase system, phosphocarrier HPr protein YP_004506743.1 PFAM: NUDIX hydrolase domain; KEGG: spe:Spro_3231 NUDIX hydrolase YP_004506744.1 PFAM: NapC/NirT cytochrome c, N-terminal; KEGG: spe:Spro_3232 NapC/NirT cytochrome c domain-containing protein YP_004506745.1 TIGRFAM: Molybdopterin guanine dinucleotide-containing S/N-oxide reductase; Twin-arginine translocation pathway, signal sequence; KEGG: spe:Spro_3233 molybdopterin guanine dinucleotide-containing S/N-oxide reductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region YP_004506746.1 KEGG: spe:Spro_3234 sugar efflux transporter; TIGRFAM: Sugar efflux; PFAM: Major facilitator superfamily MFS-1 YP_004506747.1 PFAM: Uncharacterised protein family UPF0153; KEGG: spe:Spro_3235 hypothetical protein YP_004506748.1 KEGG: spe:Spro_3236 aromatic amino acid transporter; TIGRFAM: Tryptophan/tyrosine transporter; PFAM: Tryptophan/tyrosine permease YP_004506749.1 TIGRFAM: Translation elongation factor P-like, YeiP; HAMAP: Translation elongation factor P-like, YeiP; KEGG: spe:Spro_3237 elongation factor P-like protein YeiP; PFAM: Elongation factor P, C-terminal; Translation elongation factor, KOW-like; Translation elongation factor P/YeiP, central YP_004506750.1 PFAM: Mannonate dehydratase; TIGRFAM: Mannonate dehydratase; HAMAP: Mannonate dehydratase; KEGG: spe:Spro_3238 mannonate dehydratase YP_004506751.1 KEGG: spe:Spro_3239 mannitol dehydrogenase domain-containing protein; PFAM: Mannitol dehydrogenase, C-terminal; Mannitol dehydrogenase, N-terminal YP_004506752.1 PFAM: Fimbrial protein, C-terminal; KEGG: spe:Spro_3240 hypothetical protein YP_004506753.1 PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; KEGG: spe:Spro_3241 cobalamin synthesis protein P47K YP_004506754.1 KEGG: spe:Spro_3242 PA-phosphatase-like phosphoesterase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase YP_004506755.1 PFAM: NLP/P60; KEGG: spe:Spro_3244 outer membrane lipoprotein YP_004506756.1 KEGG: spe:Spro_3245 hypothetical protein; PFAM: Diguanylate phosphodiesterase, predicted; SMART: Diguanylate phosphodiesterase, predicted YP_004506757.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: spe:Spro_3246 extracellular solute-binding protein YP_004506758.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_3247 binding-protein-dependent transport systems inner membrane component YP_004506759.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_3248 binding-protein-dependent transport systems inner membrane component YP_004506760.1 PFAM: ABC transporter-like; KEGG: spe:Spro_3249 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004506761.1 KEGG: spe:Spro_3250 hypothetical protein YP_004506762.1 KEGG: spe:Spro_3251 bicyclomycin/multidrug efflux system; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004506763.1 TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: spe:Spro_3252 16S rRNA pseudouridylate synthase A; SMART: RNA-binding S4 YP_004506764.1 KEGG: spe:Spro_3253 type III restriction protein res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004506765.1 KEGG: spe:Spro_3254 50S ribosomal protein L25; HAMAP: 50S ribosomal protein L25; PFAM: Ribosomal protein L25, N-terminal YP_004506766.1 KEGG: spe:Spro_3255 nucleoid-associated protein NdpA; HAMAP: Nucleoid-associated protein ndpA; PFAM: 37kDa nucleoid-associated bacterial protein YP_004506767.1 KEGG: spe:Spro_3256 hypothetical protein; HAMAP: Uncharacterised protein family UPF0352; PFAM: Uncharacterised protein family UPF0352 YP_004506768.1 PFAM: Sulfatase; KEGG: spe:Spro_3257 sulfatase YP_004506769.1 PFAM: DNA damage-inducible protein DinI-like; KEGG: ctu:Ctu_26810 virulence protein MsgA YP_004506772.1 PFAM: Prophage tail fibre N-terminal; Lipase, GDSL; Carbohydrate-binding, CenC-like; KEGG: eoi:ECO111_2394 side tail fiber protein YP_004506773.1 PFAM: Protein of unknown function DUF1983; KEGG: xbo:XBJ1_3931 phage host specificity protein YP_004506774.1 PFAM: Bacteriophage lambda tail assembly I; KEGG: xbo:XBJ1_1280 bacteriophage protein YP_004506775.1 manually curated; KEGG: yen:YE2300 hypothetical protein YP_004506776.1 KEGG: xbo:XBJ1_3935 phage minor tail protein; PFAM: NLP/P60; SMART: Mov34/MPN/PAD-1 YP_004506777.1 KEGG: xbo:XBJ1_1278 hypothetical protein; TIGRFAM: Phage minor tail protein L; PFAM: Phage minor tail protein L YP_004506778.1 PFAM: Phage minor tail; KEGG: xbo:XBJ1_3938 GP17 YP_004506779.1 KEGG: enc:ECL_01710 GP16; TIGRFAM: Phage tail tape measure protein; PFAM: Phage tail tape measure protein, conserved region; Prophage tail length tape measure YP_004506780.1 manually curated; TIGRFAM: Minor tail T; KEGG: stm:STM2595 minor tail-like protein; PFAM: Minor tail T YP_004506781.1 KEGG: sbo:SBO_1631 tail component of prophage; TIGRFAM: Phage minor tail protein G; PFAM: Phage minor tail protein G YP_004506782.1 KEGG: enc:ECL_01707 GP13; PFAM: Bacterial Ig-like, group 2; SMART: Bacterial Ig-like, group 2 YP_004506783.1 PFAM: Phage minor tail U; KEGG: rah:Rahaq_4516 minor tail U YP_004506784.1 PFAM: Prophage minor tail Z; KEGG: rah:Rahaq_4517 prophage minor tail Z family protein YP_004506785.1 manually curated; KEGG: rah:Rahaq_4518 hypothetical protein YP_004506786.1 PFAM: Uncharacterised conserved protein UCP030771; KEGG: esc:Entcl_1868 hypothetical protein YP_004506787.1 PFAM: Peptidase S14, ClpP; KEGG: esc:Entcl_1867 peptidase S14 ClpP YP_004506788.1 KEGG: rah:Rahaq_4521 phage portal protein, lambda family; TIGRFAM: Phage portal protein, lambda; PFAM: Phage portal protein, lambda YP_004506789.1 KEGG: rah:Rahaq_4522 hypothetical protein YP_004506790.1 PFAM: Phage terminase GpA; KEGG: rah:Rahaq_4523 terminase GpA YP_004506791.1 PFAM: Protein of unknown function DUF1441; KEGG: sew:SeSA_A0691 hypothetical protein YP_004506792.1 KEGG: kva:Kvar_2099 hypothetical protein YP_004506793.1 PFAM: DNA polymerase III-theta, bacterial; KEGG: spe:Spro_2040 DNA polymerase II subunit beta YP_004506795.1 KEGG: epy:EpC_17600 hypothetical protein YP_004506796.1 KEGG: eci:UTI89_C0932 endolysin YP_004506797.1 PFAM: Protein of unknown function DUF754; KEGG: esa:ESA_01018 hypothetical protein YP_004506798.1 manually curated; KEGG: spe:Spro_4930 phage-related transmembrane protein YP_004506799.1 PFAM: Antitermination protein; KEGG: rah:Rahaq_4534 antitermination protein YP_004506800.1 KEGG: epy:EpC_20670 hypothetical protein YP_004506801.1 PFAM: DNA methylase, C-5 cytosine-specific; KEGG: rah:Rahaq_1788 C-5 cytosine-specific DNA methylase YP_004506802.1 KEGG: yps:YPTB1798 hypothetical protein; TIGRFAM: DNA N-6-adenine-methyltransferase; PFAM: DNA N-6-adenine-methyltransferase YP_004506803.1 KEGG: xbo:XBJ1_2077 hypothetical protein YP_004506804.1 KEGG: epy:EpC_20700 phage O protein family YP_004506806.1 PFAM: Phage regulatory protein, Rha-like; Phage antirepressor protein; KEGG: cro:ROD_26191 hypothetical protein YP_004506807.1 KEGG: epy:EpC_20730 hypothetical protein YP_004506808.1 KEGG: epy:EpC_20740 hypothetical protein YP_004506809.1 KEGG: yen:YE2350 repressor protein CI; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004506810.1 KEGG: rah:Rahaq_1781 hypothetical protein YP_004506811.1 KEGG: sew:SeSA_A4443 hypothetical protein YP_004506812.1 PFAM: Protein of unknown function DUF2303; KEGG: epy:EpC_20800 hypothetical protein YP_004506813.1 KEGG: cro:ROD_26251 hypothetical protein YP_004506815.1 KEGG: ctu:Ctu_11210 hypothetical protein YP_004506816.1 KEGG: psp:PSPPH_2388 hypothetical protein YP_004506817.1 KEGG: ypb:YPTS_3265 phage-like protein YP_004506818.1 PFAM: Protein of unknown function DUF551; KEGG: ecz:ECS88_4998 hypothetical protein YP_004506819.1 KEGG: set:SEN1965 phage protein YP_004506820.1 KEGG: plu:plu2946 hypothetical protein YP_004506821.1 KEGG: plu:plu2947 hypothetical protein YP_004506823.1 PFAM: Acyltransferase 3; KEGG: pam:PANA_2174 BcsY YP_004506824.1 PFAM: SmpA/OmlA; KEGG: spe:Spro_3258 DNA-binding transcriptional activator OsmE YP_004506825.1 PFAM: PepSY-associated TM helix; KEGG: psb:Psyr_2687 PepSY-associated TM helix YP_004506826.1 KEGG: pfo:Pfl01_0597 hypothetical protein YP_004506827.1 PFAM: Protein of unknown function DUF1348; KEGG: spe:Spro_3261 hypothetical protein YP_004506828.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: spe:Spro_3262 TetR family transcriptional regulator YP_004506829.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: spe:Spro_3263 glyoxalase/bleomycin resistance protein/dioxygenase YP_004506830.1 PFAM: Porin, Gram-negative type; KEGG: spe:Spro_3264 outer membrane porin protein C YP_004506831.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_3265 major facilitator transporter YP_004506832.1 KEGG: spe:Spro_3266 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like YP_004506833.1 KEGG: spe:Spro_3267 transcriptional regulator RcsB; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region YP_004506834.1 manually curated; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal; Signal transduction response regulator, receiver region; KEGG: spe:Spro_3268 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; SMART: Signal transduction response regulator, receiver region; ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004506835.1 SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; TIGRFAM: DNA gyrase, subunit A; KEGG: spe:Spro_3269 DNA gyrase subunit A; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YP_004506836.1 PFAM: Methyltransferase type 11; TIGRFAM: Ubiquinone biosynthesis O-methyltransferase; HAMAP: 3-demethylubiquinone-9 3-methyltransferase; KEGG: spe:Spro_3270 3-demethylubiquinone-9 3-methyltransferase YP_004506837.1 KEGG: spe:Spro_3271 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: Ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal; ATP-cone YP_004506838.1 KEGG: spe:Spro_3272 ribonucleotide-diphosphate reductase subunit beta; PFAM: Ribonucleotide reductase YP_004506839.1 PFAM: Ferredoxin; KEGG: spe:Spro_3273 2Fe-2S ferredoxin YfaE YP_004506840.1 PFAM: Hok/gef cell toxic protein; KEGG: spe:Spro_3274 Hok/gef cell toxic protein YP_004506841.1 KEGG: spe:Spro_3275 competence damage-inducible protein A; TIGRFAM: Competence-induced protein CinA; Molybdenum cofactor synthesis; PFAM: Molybdopterin binding YP_004506842.1 KEGG: spe:Spro_3276 aromatic amino acid transporter; TIGRFAM: Tryptophan/tyrosine transporter; PFAM: Tryptophan/tyrosine permease YP_004506843.1 PFAM: YfaZ; KEGG: spe:Spro_3277 YfaZ family protein YP_004506844.1 KEGG: spe:Spro_3278 catalase; PFAM: Catalase related subgroup; Catalase-related immune responsive YP_004506845.1 TIGRFAM: O-succinylbenzoate-CoA ligase; KEGG: spe:Spro_3279 O-succinylbenzoic acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004506846.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; TIGRFAM: O-succinylbenzoic acid (OSB) synthetase, gamma proteobacteria/archaea; KEGG: spe:Spro_3280 O-succinylbenzoate synthase; HAMAP: o-succinylbenzoate synthase YP_004506847.1 TIGRFAM: Naphthoate synthase; KEGG: spe:Spro_3281 naphthoate synthase; PFAM: Crotonase, core YP_004506848.1 PFAM: Alpha/beta hydrolase fold-1; TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; KEGG: spe:Spro_3282 acyl-CoA thioester hydrolase YfbB; HAMAP: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase YP_004506849.1 PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; TIGRFAM: Menaquinone biosynthesis protein MenD; KEGG: spe:Spro_3283 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase; HAMAP: Menaquinone biosynthesis protein MenD YP_004506850.1 TIGRFAM: Isochorismate synthase; KEGG: spe:Spro_3284 isochorismate synthase; PFAM: Chorismate binding, C-terminal YP_004506851.1 PFAM: Glycosyltransferase 36; carbohydrate binding; Glycosyltransferase 36 associated; KEGG: spe:Spro_3285 glycosyltransferase 36 YP_004506852.1 PFAM: Protein of unknown function DUF883, ElaB; KEGG: spe:Spro_3286 hypothetical protein YP_004506853.1 KEGG: spe:Spro_3287 L-idonate 5-dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding YP_004506854.1 KEGG: spe:Spro_3288 gluconate 5-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004506855.1 KEGG: spe:Spro_3289 LacI family transcription regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004506856.1 PFAM: Protein of unknown function DUF1097; KEGG: spe:Spro_3290 hypothetical protein YP_004506857.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_3291 major facilitator transporter YP_004506858.1 KEGG: abn:AB57_0216 hypothetical protein YP_004506859.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: spe:Spro_3292 hypothetical protein YP_004506860.1 KEGG: spe:Spro_3293 cupin 2 domain-containing protein YP_004506861.1 KEGG: spe:Spro_3294 thiamine pyrophosphate binding domain-containing protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region YP_004506862.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3295 LysR family transcriptional regulator YP_004506863.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; TIGRFAM: NADH-quinone oxidoreductase, chain N; HAMAP: NAD(P)H-quinone oxidoreductase subunit 2; KEGG: spe:Spro_3296 NADH dehydrogenase subunit N YP_004506864.1 TIGRFAM: NADH-quinone oxidoreductase, chain M; KEGG: spe:Spro_3297 NADH dehydrogenase subunit M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004506865.1 TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; KEGG: spe:Spro_3298 NADH dehydrogenase subunit L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal YP_004506866.1 KEGG: spe:Spro_3299 NADH dehydrogenase subunit K; HAMAP: NAD(P)H-quinone oxidoreductase subunit 4L; PFAM: NADH:ubiquinone/quinone oxidoreductase, chain 4L YP_004506867.1 KEGG: spe:Spro_3300 NADH dehydrogenase subunit J; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 YP_004506868.1 TIGRFAM: NADH-quinone oxidoreductase, chain I; KEGG: spe:Spro_3301 NADH dehydrogenase subunit I; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_004506869.1 HAMAP: NAD(P)H-quinone oxidoreductase subunit 1; KEGG: spe:Spro_3302 NADH dehydrogenase subunit H; PFAM: NADH:ubiquinone oxidoreductase, subunit 1 YP_004506870.1 TIGRFAM: NADH:ubiquinone oxidoreductase, subunit G; KEGG: spe:Spro_3303 NADH dehydrogenase subunit G; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; Molybdopterin oxidoreductase Fe4S4 region; Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region YP_004506871.1 TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; KEGG: spe:Spro_3304 NADH dehydrogenase I subunit F; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YP_004506872.1 TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: spe:Spro_3305 NADH dehydrogenase subunit E; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit YP_004506873.1 TIGRFAM: NADH dehydrogenase I, D subunit; NADH (or F420H2) dehydrogenase, subunit C; HAMAP: NAD(P)H-quinone oxidoreductase subunit J; KEGG: spe:Spro_3306 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; PFAM: NADH-quinone oxidoreductase, subunit D; NADH:ubiquinone oxidoreductase, 30kDa subunit YP_004506874.1 PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, 20kDa subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit K; KEGG: spe:Spro_3307 NADH dehydrogenase subunit B YP_004506875.1 KEGG: spe:Spro_3308 NADH dehydrogenase subunit A; HAMAP: NAD(P)H-quinone oxidoreductase subunit 3; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 YP_004506877.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3309 LysR family transcriptional regulator YP_004506878.1 KEGG: spe:Spro_3310 aminotransferase AlaT; PFAM: Aminotransferase, class I/II YP_004506879.1 SMART: Metal-dependent phosphohydrolase, HD region; HAMAP: UPF0207 protein yfbR; KEGG: spe:Spro_3311 hypothetical protein; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain YP_004506880.1 PFAM: Divalent ion symporter; Regulator of K+ conductance, C-terminal; KEGG: spe:Spro_3312 citrate transporter YP_004506881.1 KEGG: spe:Spro_3313 phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004506882.1 KEGG: spe:Spro_3314 hypothetical protein; HAMAP: YfbU; PFAM: YfbU YP_004506883.1 KEGG: spe:Spro_3315 hypothetical protein; HAMAP: UPF0208 membrane protein yfbV; PFAM: Uncharacterised protein family UPF0208 YP_004506884.1 PFAM: Acetate/butyrate kinase; TIGRFAM: Acetate kinase; HAMAP: Acetate kinase; KEGG: spe:Spro_3316 acetate kinase YP_004506885.1 TIGRFAM: Phosphate acetyltransferase; KEGG: spe:Spro_3317 phosphate acetyltransferase; PFAM: Phosphate acetyl/butaryl transferase; DRTGG YP_004506886.1 PFAM: NUDIX hydrolase domain; KEGG: spe:Spro_3318 NUDIX hydrolase YP_004506887.1 KEGG: spe:Spro_3319 phosphodiesterase; TIGRFAM: Uncharacterised protein family UPF0025; PFAM: Metallophosphoesterase YP_004506888.1 PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: spe:Spro_3320 glutathione S-transferase domain-containing protein YP_004506889.1 KEGG: spe:Spro_3321 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; TIGRFAM: Dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase YP_004506890.1 PFAM: Domain of unknown function DUF1731, C-terminal; NAD-dependent epimerase/dehydratase; KEGG: spe:Spro_3322 hypothetical protein YP_004506891.1 PFAM: ABC transporter-like; KEGG: spe:Spro_3323 histidine/lysine/arginine/ornithine transporter subunit; SMART: ATPase, AAA+ type, core YP_004506892.1 KEGG: spe:Spro_3324 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004506893.1 KEGG: spe:Spro_3325 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004506894.1 TIGRFAM: Lysine-arginine-ornithine-binding periplasmic protein; PFAM: Extracellular solute-binding protein, family 3; KEGG: spe:Spro_3326 cationic amino acid ABC transporter periplasmic binding protein; SMART: Extracellular solute-binding protein, family 3 YP_004506895.1 KEGG: spe:Spro_3327 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein YP_004506896.1 TIGRFAM: Amidophosphoribosyl transferase; KEGG: spe:Spro_3328 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; Phosphoribosyltransferase YP_004506897.1 PFAM: Colicin V production protein; KEGG: spe:Spro_3329 colicin V production protein YP_004506898.1 PFAM: Sporulation/cell division region, bacteria; KEGG: spe:Spro_3330 hypothetical protein YP_004506899.1 TIGRFAM: Folylpolyglutamate synthetase; KEGG: spe:Spro_3331 bifunctional folylpolyglutamate synthase/dihydrofolate synthase; PFAM: Mur ligase, central; Mur ligase, C-terminal YP_004506900.1 PFAM: Carboxyl transferase; TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; HAMAP: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; KEGG: spe:Spro_3332 acetyl-CoA carboxylase subunit beta YP_004506901.1 PFAM: SNARE associated Golgi protein; KEGG: spe:Spro_3333 hypothetical protein YP_004506902.1 PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; TIGRFAM: Pseudouridine synthase I, TruA; HAMAP: Pseudouridine synthase I, TruA; KEGG: spe:Spro_3334 tRNA pseudouridine synthase A YP_004506903.1 KEGG: spe:Spro_3335 semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation region; Semialdehyde dehydrogenase, NAD-binding YP_004506904.1 HAMAP: Erythronate-4-phosphate dehydrogenase; KEGG: spe:Spro_3336 NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region YP_004506905.1 KEGG: spe:Spro_3337 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004506906.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: spe:Spro_3338 hypothetical protein YP_004506907.1 KEGG: spe:Spro_3339 integral membrane sensor signal transduction histidine kinase; PFAM: Two-component sensor kinase N-terminal; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004506908.1 KEGG: spe:Spro_3340 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004506909.1 KEGG: spe:Spro_3341 hypothetical protein YP_004506910.1 KEGG: spe:Spro_3342 hypothetical protein YP_004506911.1 KEGG: spe:Spro_3343 tricarboxylic transport YP_004506912.1 PFAM: Protein of unknown function DUF112, transmembrane; KEGG: spe:Spro_3344 hypothetical protein YP_004506913.1 KEGG: spe:Spro_3345 hexapaptide repeat-containing transferase YP_004506914.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: spe:Spro_3346 hypothetical protein YP_004506915.1 PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; KEGG: spe:Spro_3347 transcriptional regulator; SMART: HTH transcriptional regulator, GntR YP_004506916.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: spe:Spro_3348 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004506917.1 PFAM: DSBA oxidoreductase; KEGG: spe:Spro_3349 DsbA oxidoreductase YP_004506918.1 KEGG: spe:Spro_3350 cytochrome c biogenesis protein transmembrane region; PFAM: Cytochrome c assembly protein, transmembrane region YP_004506919.1 KEGG: spe:Spro_3351 metal resistance protein YP_004506920.1 KEGG: spe:Spro_3352 flagella biosynthesis regulator YP_004506921.1 KEGG: eta:ETA_11640 probable rhodanese-related sulfurtransferase; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004506922.1 KEGG: rah:Rahaq_1221 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR YP_004506923.1 PFAM: Major facilitator superfamily MFS-1; KEGG: cro:ROD_27341 major facilitator superfamily protein YP_004506924.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: spe:Spro_3358 endonuclease/exonuclease/phosphatase YP_004506925.1 TIGRFAM: Peptidase M20B, tripeptide aminopeptidase; KEGG: spe:Spro_3359 peptidase T; PFAM: Peptidase M20, dimerisation; Peptidase M20 YP_004506926.1 PFAM: Divalent ion symporter; KEGG: spe:Spro_3360 citrate transporter YP_004506927.1 PFAM: ApbE-like lipoprotein; KEGG: spe:Spro_3361 thiamine biosynthesis lipoprotein ApbE YP_004506928.1 KEGG: spe:Spro_3367 outer membrane lipoprotein YP_004506929.1 KEGG: spe:Spro_3368 3-oxoacyl-(acyl carrier protein) synthase I; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal YP_004506930.1 TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal; HAMAP: tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC; KEGG: spe:Spro_3369 5-methylaminomethyl-2-thiouridine methyltransferase; PFAM: Protein of unknown function DUF752; FAD dependent oxidoreductase YP_004506931.1 PFAM: Uncharacterised protein family YfcL; KEGG: spe:Spro_3370 YfcL protein YP_004506932.1 PFAM: Protein of unknown function DUF462; KEGG: spe:Spro_3371 hypothetical protein YP_004506933.1 PFAM: Protein of unknown function DUF81; KEGG: spe:Spro_3372 hypothetical protein YP_004506934.1 KEGG: spe:Spro_3373 penicillin-insensitive murein endopeptidase; manually curated; PFAM: Peptidase M74, penicillin-insensitive murein endopeptidase YP_004506935.1 TIGRFAM: Chorismate synthase; KEGG: spe:Spro_3374 chorismate synthase; PFAM: Chorismate synthase YP_004506936.1 TIGRFAM: Ribosomal protein L3-specific, glutamine-N5-methyltransferase; Modification methylase HemK; KEGG: spe:Spro_3375 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; PFAM: Methyltransferase small YP_004506937.1 HAMAP: UPF0115 protein yfcN; PFAM: Smr protein/MutS2 C-terminal; KEGG: spe:Spro_3376 hypothetical protein; SMART: Smr protein/MutS2 C-terminal YP_004506938.1 manually curated; TIGRFAM: Phosphohistidine phosphatase SixA, subgroup; KEGG: spe:Spro_3377 phosphohistidine phosphatase; PFAM: Phosphoglycerate mutase YP_004506939.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; TIGRFAM: Fatty oxidation complex, alpha subunit FadJ; HAMAP: Fatty oxidation complex, alpha subunit FadJ; KEGG: spe:Spro_3378 multifunctional fatty acid oxidation complex subunit alpha YP_004506940.1 TIGRFAM: Acetyl-CoA C-acyltransferase FadI; Thiolase; HAMAP: Acetyl-CoA C-acyltransferase FadI; KEGG: spe:Spro_3379 3-ketoacyl-CoA thiolase YP_004506941.1 KEGG: spe:Spro_3380 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00743; PFAM: Conserved hypothetical protein CHP00743 YP_004506942.1 PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: spe:Spro_3381 long-chain fatty acid outer membrane transporter YP_004506943.1 PFAM: VacJ-like lipoprotein; KEGG: spe:Spro_3382 VacJ family lipoprotein YP_004506944.1 TIGRFAM: Cytochrome c-type biogenesis protein CcmI; KEGG: spe:Spro_3383 TPR repeat-containing protein YP_004506945.1 PFAM: Cytochrome C biogenesis protein CcmH; KEGG: spe:Spro_3384 cytochrome c biogenesis protein YP_004506946.1 KEGG: spe:Spro_3385 periplasmic protein thiol--disulfide oxidoreductase DsbE; TIGRFAM: Periplasmic protein thiol:disulphide oxidoreductase DsbE; PFAM: Redoxin YP_004506947.1 KEGG: spe:Spro_3386 cytochrome c-type biogenesis protein CcmF; TIGRFAM: Cytochrome c-type biogenesis protein CcmF; PFAM: Cytochrome c assembly protein YP_004506948.1 KEGG: spe:Spro_3387 cytochrome c-type biogenesis protein CcmE; HAMAP: CcmE/CycJ protein; PFAM: CcmE/CycJ protein YP_004506949.1 KEGG: spe:Spro_3388 heme exporter protein CcmD; TIGRFAM: Haem exporter protein D (CcmD); PFAM: Haem exporter protein D (CcmD) YP_004506950.1 KEGG: spe:Spro_3389 heme exporter protein CcmC; TIGRFAM: Cytochrome c-type biogenesis protein CcmC; PFAM: Cytochrome c assembly protein YP_004506951.1 KEGG: spe:Spro_3390 heme exporter protein CcmB; TIGRFAM: Cytochrome c-type biogenesis protein CcmB; PFAM: Cytochrome c-type biogenesis protein CcmB YP_004506952.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, haem export, CcmA; KEGG: spe:Spro_3391 cytochrome c biogenesis protein CcmA; PFAM: ABC transporter-like YP_004506953.1 PFAM: Formate/nitrite transporter; KEGG: spe:Spro_3392 hypothetical protein YP_004506954.1 KEGG: spe:Spro_3394 DNA-binding transcriptional regulator DsdC; TIGRFAM: D-serine deaminase transcriptional activator; PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding YP_004506955.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: spe:Spro_3396 hypothetical protein YP_004506956.1 KEGG: spe:Spro_3397 hypothetical protein YP_004506957.1 KEGG: spe:Spro_3398 outer membrane protein YP_004506958.1 TIGRFAM: Lytic murein transglycosylase B; KEGG: spe:Spro_3399 murein hydrolase B YP_004506959.1 PFAM: Protein of unknown function DUF805; KEGG: pay:PAU_01746 hypothetical protein YP_004506960.1 KEGG: spe:Spro_3400 hypothetical protein YP_004506962.1 KEGG: yen:YE1232 B-type cytochrome YP_004506963.1 KEGG: spe:Spro_3401 aminotransferase; PFAM: Aminotransferase, class I/II YP_004506964.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_3402 GCN5-related N-acetyltransferase YP_004506965.1 PFAM: Protein of unknown function DUF1479; KEGG: spe:Spro_3403 hypothetical protein YP_004506966.1 KEGG: spe:Spro_3404 signal transduction histidine kinase LytS; PFAM: Signal transduction histidine kinase, internal region; Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region; GAF; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like YP_004506967.1 KEGG: spe:Spro_3405 LytTR family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region YP_004506968.1 PFAM: Protein of unknown function DUF2502; KEGG: rah:Rahaq_2994 hypothetical protein YP_004506969.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_3406 major facilitator transporter YP_004506970.1 PFAM: Glucokinase; TIGRFAM: Glucokinase; HAMAP: Glucokinase; KEGG: spe:Spro_3407 glucokinase YP_004506971.1 PFAM: Chloride channel, voltage gated; KEGG: spe:Spro_3408 hypothetical protein YP_004506972.1 KEGG: spe:Spro_3409 aspartate racemase; TIGRFAM: Aspartate racemase; PFAM: Asp/Glu/hydantoin racemase YP_004506973.1 PFAM: Transmembrane pair, bacterial; KEGG: spe:Spro_3410 transmembrane pair domain-containing protein YP_004506974.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3411 LysR family transcriptional regulator YP_004506975.1 KEGG: spe:Spro_3412 thiamine pyrophosphate binding domain-containing protein; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004506976.1 PFAM: Aldo/keto reductase; KEGG: spe:Spro_3413 aldo/keto reductase YP_004506977.1 PFAM: Protein of unknown function DUF2502; KEGG: spe:Spro_3414 hypothetical protein YP_004506978.1 TIGRFAM: Natural resistance-associated macrophage protein; HAMAP: Manganese transport protein mntH; KEGG: spe:Spro_3415 manganese transport protein MntH; PFAM: Natural resistance-associated macrophage protein YP_004506979.1 KEGG: spe:Spro_3416 nucleoside transporter; TIGRFAM: Concentrative nucleoside transporter, metazoan/bacterial; PFAM: Na dependent nucleoside transporter, C-terminal; Na dependent nucleoside transporter; Nucleoside recognition YP_004506980.1 TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; KEGG: spe:Spro_3417 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_004506981.1 KEGG: spe:Spro_3418 2,3-dihydroxybenzoate-2,3-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004506982.1 KEGG: spe:Spro_3419 isochorismatase; PFAM: Isochorismatase-like; Phosphopantetheine-binding YP_004506983.1 TIGRFAM: 2,3-dihydroxybenzoate-AMP ligase; KEGG: spe:Spro_3420 enterobactin synthase subunit E; PFAM: AMP-dependent synthetase/ligase YP_004506984.1 TIGRFAM: Isochorismate synthase; KEGG: spe:Spro_3421 isochorismate synthase; PFAM: Chorismate binding, C-terminal YP_004506985.1 PFAM: Periplasmic binding protein; KEGG: spe:Spro_3422 iron-enterobactin transporter periplasmic binding protein YP_004506986.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_3423 enterobactin exporter EntS YP_004506987.1 PFAM: Bacterial transport system permease; KEGG: spe:Spro_3424 iron-enterobactin transporter membrane protein YP_004506988.1 PFAM: Bacterial transport system permease; KEGG: spe:Spro_3425 iron-enterobactin transporter permease YP_004506989.1 PFAM: ABC transporter-like; KEGG: spe:Spro_3426 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004506990.1 TIGRFAM: Amino acid adenylation; KEGG: spe:Spro_3427 enterobactin synthase subunit F; PFAM: AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding; Thioesterase YP_004506991.1 PFAM: MbtH-like protein; KEGG: spe:Spro_3428 MbtH domain-containing protein YP_004506992.1 PFAM: esterase; KEGG: spe:Spro_3429 enterobactin/ferric enterobactin esterase YP_004506993.1 KEGG: spe:Spro_3430 outer membrane receptor FepA; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel YP_004506994.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: spe:Spro_3431 extracellular solute-binding protein YP_004506995.1 TIGRFAM: Acetolactate synthase, catabolic; KEGG: spe:Spro_3432 acetolactate synthase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004506996.1 TIGRFAM: Alpha-acetolactate decarboxylase; KEGG: spe:Spro_3433 acetolactate decarboxylase; PFAM: Alpha-acetolactate decarboxylase YP_004506997.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3434 LysR family transcriptional regulator YP_004506998.1 KEGG: spe:Spro_3435 ethanolamine ammonia-lyase; PFAM: Ethanolamine ammonia-lyase light chain YP_004506999.1 KEGG: spe:Spro_3436 ethanolamine ammonia lyase large subunit; PFAM: Ethanolamine ammonia lyase large subunit YP_004507000.1 PFAM: Protein of unknown function DUF925, bacterial; KEGG: spe:Spro_3437 hypothetical protein YP_004507001.1 KEGG: spe:Spro_3438 hypothetical protein YP_004507002.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3441 LysR family transcriptional regulator YP_004507003.1 PFAM: Bile acid:sodium symporter; KEGG: spe:Spro_3442 bile acid:sodium symporter YP_004507004.1 KEGG: spe:Spro_3443 hypothetical protein YP_004507005.1 KEGG: spe:Spro_3444 NAD-dependent DNA ligase LigA; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; Zinc-finger, NAD-dependent DNA ligase C4-type; Helix-hairpin-helix motif; BRCT; TIGRFAM: NAD-dependent DNA ligase; HAMAP: DNA ligase; SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT YP_004507006.1 SMART: ZipA, C-terminal FtsZ-binding region; TIGRFAM: Cell division protein ZipA; KEGG: spe:Spro_3445 cell division protein ZipA; HAMAP: Cell division protein zipA-like protein; PFAM: ZipA, C-terminal FtsZ-binding region YP_004507007.1 PFAM: Protein of unknown function DUF540; KEGG: spe:Spro_3446 sulfate transport protein CysZ YP_004507008.1 TIGRFAM: Cysteine synthase A; Cysteine synthase K/M; KEGG: spe:Spro_3447 cysteine synthase A; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004507009.1 KEGG: spe:Spro_3448 PTS system phosphohistidinoprotein-hexose phosphotransferase subunit HPr; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein YP_004507010.1 TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; KEGG: spe:Spro_3449 phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile region YP_004507011.1 manually curated; TIGRFAM: Phosphotransferase system, sugar-specific permease EIIA 1 domain; KEGG: spe:Spro_3450 PTS system glucose-specific transporter subunit; PFAM: Phosphotransferase system, sugar-specific permease EIIA 1 domain YP_004507012.1 PFAM: Sulfotransferase; KEGG: pla:Plav_2304 sulfotransferase YP_004507013.1 KEGG: spe:Spro_3451 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004507014.1 KEGG: spe:Spro_3452 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004507015.1 KEGG: yps:YPTB2720 HlyD family secretion protein; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004507016.1 PFAM: ABC transporter-like; Protein of unknown function DUF214, permase predicted; KEGG: yen:YE1199 ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004507017.1 TIGRFAM: Cysteine synthase B; Cysteine synthase K/M; KEGG: spe:Spro_3453 cysteine synthase B; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004507018.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Sulphate transport system permease 1; KEGG: spe:Spro_3454 sulfate/thiosulfate transporter subunit; PFAM: ABC transporter-like YP_004507019.1 KEGG: spe:Spro_3455 sulfate/thiosulfate transporter permease subunit; TIGRFAM: Sulphate ABC transporter permease 2; Sulphate ABC transporter, permease CysW; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004507020.1 KEGG: spe:Spro_3456 sulfate/thiosulfate transporter subunit; TIGRFAM: Sulphate ABC transporter permease 2; Sulphate ABC transporter, permease CysT; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004507021.1 KEGG: spe:Spro_3457 thiosulfate transporter subunit; TIGRFAM: Thiosulphate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004507022.1 KEGG: spe:Spro_3458 Dyp-type peroxidase; TIGRFAM: Dyp-type peroxidase; PFAM: Dyp-type peroxidase YP_004507023.1 PFAM: Protein of unknown function DUF1131; KEGG: spe:Spro_3459 hypothetical protein YP_004507024.1 KEGG: spe:Spro_3460 hypothetical protein YP_004507025.1 KEGG: spe:Spro_3461 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00156; PFAM: Protein of unknown function DUF388, OB-fold YP_004507026.1 KEGG: spe:Spro_3462 acetyltransferase; HAMAP: Acetyltransferase ypeA; PFAM: GCN5-related N-acetyltransferase YP_004507027.1 KEGG: spe:Spro_3463 N-acetylmuramoyl-L-alanine amidase I; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic YP_004507028.1 HAMAP: Coproporphyrinogen-III oxidase, aerobic; KEGG: spe:Spro_3464 coproporphyrinogen III oxidase; PFAM: Coproporphyrinogen III oxidase YP_004507029.1 KEGG: spe:Spro_3465 hypothetical protein; HAMAP: Protein of unknown function DUF188; PFAM: Protein of unknown function DUF188 YP_004507030.1 PFAM: Protein of unknown function DUF399; KEGG: spe:Spro_3469 hypothetical protein YP_004507031.1 PFAM: Amino acid permease-associated region; KEGG: spe:Spro_3470 S-methylmethionine transporter YP_004507032.1 KEGG: spe:Spro_3471 homocysteine methyltransferase; PFAM: Homocysteine S-methyltransferase YP_004507033.1 PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; Phosphate acetyl/butaryl transferase; KEGG: spe:Spro_3472 malic enzyme YP_004507034.1 KEGG: spe:Spro_3473 hypothetical protein YP_004507035.1 KEGG: spe:Spro_3474 phagelysin YP_004507036.1 KEGG: spe:Spro_3475 phage holin; TIGRFAM: Holin, phage lambda; PFAM: Holin, phage lambda YP_004507037.1 PFAM: Glycoside hydrolase, family 18, catalytic domain; Carbohydrate-binding domain, family 5/12; KEGG: spe:Spro_3476 chitinase; SMART: Chitinase II; Carbohydrate-binding domain, family 5/12 YP_004507038.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: spe:Spro_3477 LysR family transcriptional regulator YP_004507039.1 PFAM: Chitin-binding, domain 3; KEGG: spe:Spro_3478 chitin-binding domain-containing protein YP_004507040.1 TIGRFAM: Transaldolase AB; HAMAP: Transaldolase; KEGG: spe:Spro_3479 transaldolase A; PFAM: Transaldolase YP_004507041.1 TIGRFAM: Transketolase, bacterial-like; KEGG: spe:Spro_3480 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal YP_004507042.1 KEGG: spe:Spro_3483 NUDIX hydrolase; TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase domain YP_004507043.1 KEGG: spe:Spro_3484 cytochrome c-type protein NapC; TIGRFAM: Periplasmic nitrate reductase c-type cytochrome, NapC/NirT; PFAM: NapC/NirT cytochrome c, N-terminal YP_004507044.1 PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: spe:Spro_3485 citrate reductase cytochrome c-type subunit YP_004507045.1 PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Twin-arginine translocation pathway, signal sequence, subgroup; Molydopterin dinucleotide-binding region; TIGRFAM: Nitrate reductase, large subunit, periplasmic; Twin-arginine translocation pathway, signal sequence; HAMAP: Nitrate reductase, large subunit, periplasmic; KEGG: spe:Spro_3486 nitrate reductase catalytic subunit YP_004507046.1 PFAM: NapD; KEGG: spe:Spro_3487 assembly protein for periplasmic nitrate reductase YP_004507047.1 KEGG: spe:Spro_3488 ferredoxin-type protein NapF; TIGRFAM: Ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup YP_004507048.1 KEGG: spe:Spro_3489 nitrate/nitrite sensor protein NarQ; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; HAMP linker domain YP_004507049.1 KEGG: spe:Spro_3490 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver region; Transcription regulator LuxR, C-terminal YP_004507050.1 PFAM: Uncharacterised conserved protein UCP037266; KEGG: spe:Spro_3491 hypothetical protein YP_004507051.1 KEGG: yen:YE1151 aminoglycoside/multidrug efflux system; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004507052.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: spe:Spro_3494 TonB-dependent receptor YP_004507053.1 KEGG: spe:Spro_3495 receptor YP_004507054.1 KEGG: spe:Spro_3496 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004507055.1 KEGG: spe:Spro_3497 hypothetical protein YP_004507056.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_3498 GCN5-related N-acetyltransferase YP_004507057.1 PFAM: Chorismate mutase, type II; KEGG: pfl:PFL_0353 isochorismate-pyruvate lyase YP_004507058.1 KEGG: vfm:VFMJ11_A0648 acetyltransferase, GNAT family YP_004507059.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_3499 GCN5-related N-acetyltransferase YP_004507060.1 KEGG: spe:Spro_3500 hypothetical protein; TIGRFAM: Conserved hypothetical protein, ArsC related; PFAM: Arsenate reductase-like YP_004507061.1 TIGRFAM: Succinyl-diaminopimelate desuccinylase, proteobacteria; HAMAP: Succinyl-diaminopimelate desuccinylase, proteobacteria; KEGG: spe:Spro_3501 succinyl-diaminopimelate desuccinylase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004507062.1 PFAM: Peptidase M15B/M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: spe:Spro_3502 peptidase M15B and M15C dd-carboxypeptidase VanY/endolysin YP_004507063.1 HAMAP: UPF0370 protein ypfN; KEGG: spe:Spro_3503 hypothetical protein YP_004507064.1 KEGG: pmy:Pmen_0655 transglutaminase domain-containing protein; PFAM: Protein of unknown function DUF2126; Bacterial transglutaminase-like, N-terminal; Transglutaminase-like; SMART: Transglutaminase-like YP_004507065.1 PFAM: Protein of unknown function DUF404, bacteria N-terminal; Protein of unknown function DUF407; Protein of unknown function DUF403, bacteria; KEGG: app:CAP2UW1_4069 hypothetical protein YP_004507066.1 KEGG: mei:Msip34_0340 transglutaminase domain protein; PFAM: Bacterial transglutaminase-like, N-terminal; Transglutaminase-like; SMART: Transglutaminase-like YP_004507067.1 PFAM: Phospholipase/carboxylesterase; KEGG: spe:Spro_3504 esterase YpfH YP_004507068.1 KEGG: spe:Spro_3505 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF699, ATPase ; GCN5-related N-acetyltransferase YP_004507069.1 PFAM: Protein of unknown function, zinc metallopeptidase KEGG: spe:Spro_3506 hypothetical protein YP_004507070.1 PFAM: SAICAR synthetase; TIGRFAM: SAICAR synthetase; HAMAP: Phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: spe:Spro_3507 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_004507071.1 PFAM: NlpBDapX lipoprotein; KEGG: spe:Spro_3508 lipoprotein YP_004507072.1 PFAM: Dihydrodipicolinate synthetase; TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: spe:Spro_3509 dihydrodipicolinate synthase YP_004507073.1 PFAM: Amino acid-binding ACT; KEGG: spe:Spro_3510 glycine cleavage system transcriptional repressor YP_004507074.1 KEGG: spe:Spro_3511 thioredoxin-dependent thiol peroxidase; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_004507075.1 PFAM: Uncharacterised protein family UPF0118; KEGG: spe:Spro_3512 hypothetical protein YP_004507076.1 KEGG: kpn:KPN_01826 hypothetical protein YP_004507077.1 PFAM: Molybdopterin biosynthesis MoaE; KEGG: esc:Entcl_3036 molybdopterin biosynthesis MoaE protein YP_004507078.1 KEGG: sea:SeAg_B0840 molybdopterin synthase small subunit; TIGRFAM: Molybdopterin converting factor, subunit 1; PFAM: ThiamineS YP_004507079.1 TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum cofactor synthesis C-terminal; Radical SAM; KEGG: ebi:EbC_13450 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB YP_004507080.1 PFAM: Protein of unknown function DUF2474; KEGG: ddc:Dd586_2475 hypothetical protein YP_004507081.1 KEGG: cko:CKO_01228 hypothetical protein; TIGRFAM: Cytochrome bd ubiquinol oxidase, subunit II; PFAM: Cytochrome bd ubiquinol oxidase, subunit II YP_004507082.1 PFAM: Cytochrome bd ubiquinol oxidase, subunit I; KEGG: cko:CKO_01227 hypothetical protein YP_004507083.1 KEGG: api:100162283 similar to conserved hypothetical protein; TIGRFAM: Dyp-type peroxidase; PFAM: Dyp-type peroxidase YP_004507084.1 TIGRFAM: Oxidoreductase alpha (molybdopterin) subunit; KEGG: enc:ECL_01530 hypothetical protein; PFAM: Molydopterin dinucleotide-binding region; Molybdopterin oxidoreductase YP_004507085.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: spe:Spro_3513 lysine exporter protein LysE/YggA YP_004507086.1 KEGG: spe:Spro_3514 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004507088.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: spe:Spro_3515 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004507089.1 KEGG: spe:Spro_3516 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2 YP_004507091.1 PFAM: Peptidase M48, Ste24p; KEGG: spe:Spro_3517 peptidase M48 Ste24p YP_004507092.1 TIGRFAM: Arsenate reductase; KEGG: spe:Spro_3518 arsenate reductase; PFAM: Arsenate reductase-like YP_004507093.1 KEGG: eay:EAM_0332 DNA-binding protein YP_004507094.1 PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); manually curated; TIGRFAM: Chromosomal replication control, regulator Hda; KEGG: yen:YE1130 DNA replication initiation factor; HAMAP: DnaA-like protein hda YP_004507095.1 KEGG: spe:Spro_3520 cell envelope integrity inner membrane protein TolA YP_004507096.1 PFAM: Transglycosylase-associated protein; KEGG: spe:Spro_3521 hypothetical protein YP_004507097.1 KEGG: spe:Spro_3522 uracil transporter; TIGRFAM: Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease YP_004507098.1 KEGG: spe:Spro_3523 uracil phosphoribosyltransferase; TIGRFAM: Uracil phosphoribosyl transferase; PFAM: Phosphoribosyltransferase YP_004507099.1 TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; KEGG: spe:Spro_3524 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein YP_004507100.1 TIGRFAM: Phosphoribosylglycinamide formyltransferase; KEGG: spe:Spro_3525 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal YP_004507101.1 PFAM: Plasmid stabilisation system; KEGG: spe:Spro_3526 addiction module antitoxin YP_004507102.1 KEGG: spe:Spro_3527 hypothetical protein YP_004507103.1 KEGG: spe:Spro_3528 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_004507104.1 PFAM: Protein of unknown function DUF596; KEGG: kpe:KPK_A0225 hypothetical protein YP_004507105.1 KEGG: kpe:KPK_A0227 hemagglutinin family protein YP_004507106.1 KEGG: eay:EAM_2755 hypothetical protein YP_004507107.1 KEGG: plu:plu3064 hypothetical protein; TIGRFAM: Filamentous haemagglutinin, N-terminal, bacterial; Adhesin HecA 20-residue repeat x2; PFAM: Protein of unknown function DUF637, haemagglutinin/haemolysin ; Filamentous haemagglutinin, N-terminal, bacterial; Filamentous haemagglutinin, bacterial YP_004507108.1 PFAM: Polypeptide-transport-associated, ShlB-type; Haemolysin activator HlyB; KEGG: plu:plu3569 hypothetical protein YP_004507109.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphate transport system permease 1; KEGG: spe:Spro_3538 phosphate transporter ATP-binding protein; PFAM: ABC transporter-like YP_004507110.1 KEGG: spe:Spro_3539 phosphate ABC transporter inner membrane subunit PstA; TIGRFAM: Phosphate transport system permease 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004507111.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_3540 binding-protein-dependent transport systems inner membrane component YP_004507112.1 PFAM: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1; HAMAP: Polyphosphate kinase; KEGG: spe:Spro_3541 polyphosphate kinase YP_004507113.1 TIGRFAM: exopolyphosphatase; KEGG: spe:Spro_3542 exopolyphosphatase; PFAM: Ppx/GppA phosphatase YP_004507114.1 KEGG: spe:Spro_3544 hypothetical protein YP_004507115.1 KEGG: spe:Spro_3545 magnesium transporter; TIGRFAM: Divalent cation transporter; PFAM: Magnesium transporter, MgtE intracellular region; Cystathionine beta-synthase, core; MgtE integral membrane region YP_004507116.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-3; PAS fold; MASE1; PAS fold-4; Diguanylate phosphodiesterase, predicted; KEGG: yen:YE1116 sensor protein; SMART: Diguanylate cyclase, predicted; PAS; PAC motif; Diguanylate phosphodiesterase, predicted YP_004507117.1 PFAM: Transposase MuA/Repressor CI, DNA-binding; KEGG: spe:Spro_3546 MuA-transposase/repressor protein CI DNA-binding YP_004507118.1 KEGG: spe:Spro_3547 AraC family transcriptional regulator; PFAM: Ada DNA repair, metal-binding; Helix-turn-helix, AraC type; AlkA, N-terminal; HhH-GPD domain; SMART: Helix-turn-helix, AraC domain; HhH-GPD domain YP_004507119.1 KEGG: spe:Spro_3548 chaperone YP_004507120.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_3549 GCN5-related N-acetyltransferase YP_004507121.1 PFAM: Chloramphenicol phosphotransferase-like; KEGG: spe:Spro_3550 kinase YP_004507122.1 PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: xne:XNC1_2253 pyridoxamine 5'-phosphate oxidase YP_004507123.1 PFAM: Aldo/keto reductase; KEGG: spe:Spro_3551 aldo/keto reductase YP_004507124.1 KEGG: spe:Spro_3552 multidrug efflux system subunit MdtA; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004507125.1 KEGG: spe:Spro_3553 multidrug efflux system subunit MdtB; HAMAP: Multidrug resistance protein mdtB; PFAM: Acriflavin resistance protein YP_004507126.1 KEGG: spe:Spro_3554 multidrug efflux system subunit MdtC; HAMAP: Multidrug resistance protein mdtC; PFAM: Acriflavin resistance protein YP_004507127.1 KEGG: spe:Spro_3555 multidrug efflux system protein MdtE; HAMAP: multidrug resistance protein mdtD; PFAM: Major facilitator superfamily MFS-1 YP_004507128.1 KEGG: spe:Spro_3556 signal transduction histidine-protein kinase BaeS; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004507129.1 KEGG: spe:Spro_3557 DNA-binding transcriptional regulator BaeR; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004507131.1 PFAM: Protein of unknown function DUF1508; KEGG: spe:Spro_3560 hypothetical protein YP_004507132.1 PFAM: Peptidase U32; KEGG: spe:Spro_3561 peptidase U32 YP_004507133.1 SMART: Diacylglycerol kinase, catalytic region; TIGRFAM: lipid kinase YegS; Conserved hypothetical protein CHP00147; KEGG: spe:Spro_3562 lipid kinase; HAMAP: lipid kinase yegS; PFAM: Diacylglycerol kinase, catalytic region YP_004507134.1 KEGG: spe:Spro_3563 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004507135.1 KEGG: spe:Spro_3564 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding YP_004507136.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_3565 major facilitator transporter YP_004507137.1 KEGG: spe:Spro_3566 mannitol dehydrogenase domain-containing protein; PFAM: Mannitol dehydrogenase, C-terminal; Mannitol dehydrogenase, N-terminal YP_004507138.1 KEGG: spe:Spro_3567 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004507139.1 PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: spe:Spro_3568 fructose-bisphosphate aldolase YP_004507140.1 SMART: Cystathionine beta-synthase, core; TIGRFAM: KpsF/GutQ; KEGG: spe:Spro_3575 D-arabinose 5-phosphate isomerase; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core YP_004507141.1 PFAM: Inhibitor of vertebrate lysozyme; KEGG: spe:Spro_3576 inhibitor of vertebrate lysozyme YP_004507142.1 TIGRFAM: Phosphomethylpyrimidine kinase type-2; KEGG: spe:Spro_3577 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_004507143.1 PFAM: Hydroxyethylthiazole kinase; TIGRFAM: hydroxyethylthiazole kinase; HAMAP: Hydroxyethylthiazole kinase; KEGG: spe:Spro_3578 hydroxyethylthiazole kinase YP_004507144.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_3579 GCN5-related N-acetyltransferase YP_004507145.1 PFAM: Methyltransferase type 12; KEGG: pap:PSPA7_3251 hypothetical protein YP_004507146.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_3583 major facilitator transporter YP_004507147.1 PFAM: Helix-turn-helix, HxlR type; KEGG: spe:Spro_3584 HxlR family transcriptional regulator YP_004507148.1 TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: spe:Spro_3586 pseudouridine synthase; SMART: RNA-binding S4 YP_004507149.1 KEGG: spe:Spro_3587 outer membrane autotransporter; TIGRFAM: Outer membrane autotransporter barrel; PFAM: Autotransporter beta-domain YP_004507150.1 KEGG: enc:ECL_04309 hypothetical protein YP_004507151.1 KEGG: spe:Spro_3589 two component LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver region YP_004507152.1 KEGG: spe:Spro_3590 integral membrane sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004507153.1 PFAM: Crotonase, core; KEGG: spe:Spro_3591 enoyl-CoA hydratase/isomerase YP_004507154.1 PFAM: Helix-turn-helix, HxlR type; KEGG: spe:Spro_3592 HxlR family transcriptional regulator YP_004507155.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ebi:EbC_28380 GCN5-related N-acetyltransferase YP_004507156.1 KEGG: rah:Rahaq_2329 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004507157.1 PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: sjp:SJA_C1-34830 LmbE-like protein YP_004507158.1 KEGG: bpy:Bphyt_0911 undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase YP_004507160.1 KEGG: ecp:ECP_3006 protein of unknown function (DUF342); region: DUF342; pfam03961 YP_004507161.1 KEGG: ecp:ECP_3007 protein of unknown function (DUF2971); region: DUF2971; pfam11185 YP_004507162.1 PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; tRNA methyl transferase-like; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; HAMAP: GMP synthase [glutamine-hydrolyzing]; KEGG: spe:Spro_3595 GMP synthase YP_004507163.1 SMART: Cystathionine beta-synthase, core; TIGRFAM: IMP dehydrogenase; KEGG: spe:Spro_3596 inosine 5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core YP_004507164.1 TIGRFAM: Exonuclease VII, large subunit; HAMAP: Exodeoxyribonuclease 7 large subunit; KEGG: spe:Spro_3597 exodeoxyribonuclease VII large subunit; PFAM: Exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type YP_004507165.1 KEGG: spe:Spro_3598 alpha-glucosidase; PFAM: Glycoside hydrolase, family 31 YP_004507166.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_3599 major facilitator transporter YP_004507167.1 KEGG: spe:Spro_3600 LacI family transcription regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004507168.1 KEGG: spe:Spro_3601 peptidase M4 thermolysin; PFAM: Peptidase M4, thermolysin C-terminal; Peptidase M4, thermolysin YP_004507169.1 KEGG: spe:Spro_3602 hypothetical protein YP_004507170.1 PFAM: Protein of unknown function DUF1407; KEGG: spe:Spro_3603 hypothetical protein YP_004507171.1 PFAM: Auxin efflux carrier; KEGG: spe:Spro_3604 auxin efflux carrier YP_004507172.1 TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; HAMAP: GTP-binding, EngA; KEGG: spe:Spro_3605 GTP-binding protein EngA; PFAM: GTP-binding protein, HSR1-related YP_004507173.1 TIGRFAM: Outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone repeat; KEGG: spe:Spro_3606 outer membrane protein assembly complex subunit YfgL; SMART: Pyrrolo-quinoline quinone beta-propeller repeat YP_004507174.1 PFAM: Protein of unknown function DUF2133; KEGG: spe:Spro_3607 hypothetical protein YP_004507175.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Anticodon-binding; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: spe:Spro_3608 histidyl-tRNA synthetase YP_004507176.1 TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; KEGG: spe:Spro_3609 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type YP_004507177.1 HAMAP: Cytoskeleton protein rodZ; PFAM: Helix-turn-helix type 3; KEGG: spe:Spro_3610 cytoskeletal protein RodZ; SMART: Helix-turn-helix type 3 YP_004507178.1 TIGRFAM: Pilus biogenesis/stability type IV, PilW; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: spe:Spro_3611 type IV pilus biogenesis/stability protein PilW; SMART: Tetratricopeptide repeat YP_004507179.1 TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; KEGG: spe:Spro_3612 ribosomal RNA large subunit methyltransferase N; PFAM: Radical SAM YP_004507180.1 SMART: Nucleoside diphosphate kinase, core; HAMAP: Nucleoside diphosphate kinase; KEGG: spe:Spro_3613 nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase, core YP_004507181.1 TIGRFAM: Penicillin-binding protein 1C; KEGG: spe:Spro_3614 penicillin-binding protein 1C; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; Penicillin-binding, C-terminal YP_004507182.1 PFAM: Alpha-2-macroglobulin, N-terminal; Alpha-2-macroglobulin, N-terminal 2; KEGG: spe:Spro_3615 alpha-2-macroglobulin domain-containing protein YP_004507183.1 TIGRFAM: Phosphotransferase system, glucose-like IIB component; KEGG: pct:PC1_3019 PTS system, glucose-like IIB subunint; PFAM: Phosphotransferase system, EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_004507184.1 KEGG: eca:ECA3226 6-phospho-alpha-glucosidase; PFAM: Glycoside hydrolase, family 4 YP_004507185.1 PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: eca:ECA3228 transcriptional regulator YP_004507186.1 PFAM: SseB; KEGG: spe:Spro_3619 enhanced serine sensitivity protein SseB YP_004507187.1 HAMAP: Peptidase B; KEGG: spe:Spro_3620 aminopeptidase B; PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal YP_004507188.1 KEGG: spe:Spro_3621 hypothetical protein; TIGRFAM: ISC system FeS cluster assembly, IscX; PFAM: ISC system FeS cluster assembly, IscX YP_004507189.1 KEGG: spe:Spro_3622 ferredoxin, 2Fe-2S type, ISC system; TIGRFAM: Ferredoxin, 2Fe-2S type; PFAM: Ferredoxin YP_004507190.1 TIGRFAM: ISC system FeS cluster assembly, HscA chaperone; HAMAP: ISC system FeS cluster assembly, HscA chaperone; KEGG: spe:Spro_3623 chaperone protein HscA; PFAM: Heat shock protein 70 YP_004507191.1 SMART: Heat shock protein DnaJ, N-terminal; TIGRFAM: Co-chaperone Hsc20; KEGG: spe:Spro_3624 co-chaperone HscB; HAMAP: Co-chaperone protein hscB; PFAM: Heat shock cognate protein B, C-terminal oligomerisation; Heat shock protein DnaJ, N-terminal YP_004507192.1 TIGRFAM: ISC system FeS cluster assembly, IscA scaffold; FeS cluster insertion; HAMAP: Iron-binding protein iscA; KEGG: spe:Spro_3625 iron-sulfur cluster assembly protein; PFAM: FeS cluster biogenesis YP_004507193.1 KEGG: spe:Spro_3626 scaffold protein; TIGRFAM: ISC system FeS cluster assembly, IscU scaffold; PFAM: NIF system FeS cluster assembly, NifU, N-terminal YP_004507194.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; TIGRFAM: Cysteine desulfurase; HAMAP: Cysteine desulfurase; KEGG: spe:Spro_3627 cysteine desulfurase YP_004507195.1 TIGRFAM: ISC system FeS cluster assembly, IscR transcription factor; Transcriptional regulator, Rrf2; HAMAP: HTH-type transcriptional regulator iscR; KEGG: spe:Spro_3628 DNA-binding transcriptional regulator IscR; PFAM: Transcriptional regulator, Rrf2 YP_004507196.1 KEGG: spe:Spro_3629 RNA methyltransferase; TIGRFAM: RNA methyltransferase TrmH, group 1; PFAM: tRNA/rRNA methyltransferase, SpoU YP_004507197.1 PFAM: Inositol monophosphatase; KEGG: spe:Spro_3630 inositol monophosphatase YP_004507198.1 PFAM: Nickel/cobalt transporter, high-affinity; KEGG: spe:Spro_3631 high-affinity nickel-transporter YP_004507199.1 PFAM: Protein of unknown function DUF1007; KEGG: spe:Spro_3632 hypothetical protein YP_004507200.1 PFAM: PRD; KEGG: spe:Spro_3633 stationary phase inducible protein CsiE YP_004507201.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_3634 3-phenylpropionic acid transporter YP_004507202.1 KEGG: spe:Spro_3638 serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase YP_004507203.1 HAMAP: Flavohemoprotein; KEGG: spe:Spro_3639 nitric oxide dioxygenase; PFAM: Globin, subset; Oxidoreductase FAD-binding region; Oxidoreductase FAD/NAD(P)-binding YP_004507204.1 PFAM: Nitrogen regulatory protein PII; KEGG: spe:Spro_3649 nitrogen regulatory protein P-II 1 YP_004507205.1 KEGG: spe:Spro_3650 NAD synthetase; TIGRFAM: NAD+ synthase; PFAM: NAD+ synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004507206.1 KEGG: spe:Spro_3651 two component sigma54 specific fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_004507207.1 KEGG: spe:Spro_3652 hypothetical protein YP_004507208.1 KEGG: spe:Spro_3653 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004507209.1 PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; TIGRFAM: Phosphoribosylformylglycinamidine synthase, eukaryote/proteobacteria; HAMAP: Phosphoribosylformylglycinamidine synthase; KEGG: spe:Spro_3654 phosphoribosylformylglycinamidine synthase YP_004507210.1 HAMAP: Membrane-bound lytic murein transglycosylase F; PFAM: Lytic transglycosylase-like, catalytic; Extracellular solute-binding protein, family 3; KEGG: spe:Spro_3655 transglycosylase; SMART: Extracellular solute-binding protein, family 3 YP_004507211.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: spe:Spro_3656 CMP/dCMP deaminase zinc-binding YP_004507212.1 KEGG: spe:Spro_3657 integral membrane protein YP_004507213.1 manually curated; KEGG: spe:Spro_3660 phosphotransferase system EIIC; PFAM: Phosphotransferase system, EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_004507214.1 TIGRFAM: Glucokinase regulatory-like protein; HAMAP: N-acetylmuramic acid 6-phosphate etherase; KEGG: spe:Spro_3661 N-acetylmuramic acid-6-phosphate etherase; PFAM: Sugar isomerase (SIS) YP_004507216.1 PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: spe:Spro_3662 DNA-binding transcriptional regulator YP_004507217.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: spe:Spro_3664 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004507218.1 TIGRFAM: Holo-[acyl carrier protein] synthase; Phosphopantethiene-protein transferase; HAMAP: Holo-[acyl-carrier-protein] synthase; KEGG: spe:Spro_3665 4'-phosphopantetheinyl transferase; PFAM: 4'-phosphopantetheinyl transferase YP_004507219.1 PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; KEGG: spe:Spro_3666 pyridoxine 5'-phosphate synthase YP_004507220.1 TIGRFAM: Recombination protein O, RecO; HAMAP: DNA repair protein recO; KEGG: spe:Spro_3667 DNA repair protein RecO; PFAM: Recombination protein O, RecO YP_004507221.1 TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; HAMAP: GTP-binding protein Era; KEGG: spe:Spro_3668 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2 YP_004507222.1 KEGG: rah:Rahaq_3434 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA binding; TIGRFAM: Ribonuclease III, bacterial; HAMAP: Ribonuclease III, bacterial; SMART: Ribonuclease III; Double-stranded RNA binding YP_004507223.1 KEGG: spe:Spro_3670 signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Peptidase S26, conserved region YP_004507224.1 TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; HAMAP: GTP-binding protein lepA; KEGG: spe:Spro_3671 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal YP_004507225.1 KEGG: spe:Spro_3672 hypothetical protein YP_004507226.1 PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: spe:Spro_3673 SoxR reducing system protein RseC YP_004507227.1 PFAM: MucB/RseB; KEGG: spe:Spro_3674 periplasmic negative regulator of sigmaE YP_004507228.1 PFAM: Anti sigma-E protein RseA, N-terminal; Anti sigma-E protein RseA, C-terminal; KEGG: spe:Spro_3675 anti-RNA polymerase sigma factor SigE YP_004507229.1 KEGG: spe:Spro_3676 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma-70 RpoE type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004507230.1 TIGRFAM: L-aspartate oxidase; KEGG: spe:Spro_3677 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal YP_004507231.1 KEGG: spe:Spro_3678 methyltransferase small; HAMAP: tRNA (adenine-N(6)-)-methyltransferase; PFAM: Methyltransferase small YP_004507232.1 KEGG: spe:Spro_3679 ATP-dependent RNA helicase SrmB; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004507233.1 SMART: Ankyrin repeat; KEGG: spe:Spro_3680 ankyrin YP_004507234.1 KEGG: spe:Spro_3681 phospholipase A(1) YP_004507235.1 KEGG: spe:Spro_3682 autonomous glycyl radical cofactor GrcA; HAMAP: Glycyl radical cofactor protein YfiD; PFAM: Formate C-acetyltransferase glycine radical YP_004507236.1 TIGRFAM: Uracil-DNA glycosylase; HAMAP: Uracil-DNA glycosylase; KEGG: spe:Spro_3683 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like YP_004507237.1 KEGG: spe:Spro_3684 heat shock protein GrpE; HAMAP: GrpE nucleotide exchange factor; PFAM: GrpE nucleotide exchange factor YP_004507238.1 KEGG: spe:Spro_3685 inorganic polyphosphate/ATP-NAD kinase; HAMAP: inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD/AcoX kinase YP_004507239.1 KEGG: spe:Spro_3686 recombination and repair protein; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC protein, N-terminal YP_004507240.1 PFAM: SmpA/OmlA; KEGG: spe:Spro_3687 hypothetical protein YP_004507241.1 KEGG: spe:Spro_3688 hypothetical protein; HAMAP: Protein rnfH; PFAM: Uncharacterised protein family UPF0125 YP_004507242.1 PFAM: Streptomyces cyclase/dehydrase; KEGG: spe:Spro_3689 hypothetical protein YP_004507243.1 TIGRFAM: SsrA-binding protein; HAMAP: SsrA-binding protein; KEGG: spe:Spro_3690 SsrA-binding protein; PFAM: SsrA-binding protein YP_004507244.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: kpn:KPN_03308 LysR family transcriptional regulator YP_004507245.1 KEGG: eum:ECUMN_1773 hypothetical protein YP_004507246.1 PFAM: ThiJ/PfpI; KEGG: eum:ECUMN_1772 hypothetical protein YP_004507247.1 PFAM: Aldo/keto reductase; KEGG: eum:ECUMN_1771 Tas protein YP_004507248.1 KEGG: rop:ROP_53380 decarboxylase; PFAM: Amidohydrolase 2 YP_004507249.1 PFAM: Flavodoxin-like fold; KEGG: kpn:KPN_03310 NAD(P)H oxidoreductase YP_004507250.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: eum:ECUMN_1764 lipoprotein YP_004507251.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: eum:ECUMN_1763 carboxymuconolactone decarboxylase precursor YP_004507252.1 KEGG: pst:PSPTO_1584 alcohol dehydrogenase, zinc-containing protein; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004507253.1 KEGG: pst:PSPTO_1583 hypothetical protein YP_004507254.1 KEGG: esa:ESA_pESA3p05526 hypothetical protein YP_004507256.1 KEGG: enc:ECL_01110 hypothetical protein YP_004507257.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_3703 GCN5-related N-acetyltransferase YP_004507258.1 PFAM: Methyltransferase type 11; KEGG: spe:Spro_3704 type 11 methyltransferase YP_004507259.1 KEGG: pao:Pat9b_2912 hypothetical protein YP_004507260.1 KEGG: spe:Spro_3705 hypothetical protein YP_004507261.1 PFAM: DoxX; Surfeit locus 4; KEGG: spe:Spro_3706 DoxX family protein YP_004507262.1 KEGG: spe:Spro_3708 hypothetical protein YP_004507263.1 PFAM: Protein of unknown function DUF1198; KEGG: spe:Spro_3709 hypothetical protein YP_004507264.1 PFAM: Protein of unknown function DUF2002; KEGG: spe:Spro_3710 hypothetical protein YP_004507265.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_3711 major facilitator transporter YP_004507266.1 KEGG: spe:Spro_3712 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004507267.1 KEGG: spe:Spro_3713 hypothetical protein YP_004507268.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3714 LysR family transcriptional regulator YP_004507269.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_3715 major facilitator transporter YP_004507270.1 KEGG: spe:Spro_3716 cytoplasmic protein YP_004507272.1 KEGG: pam:PANA_2003 hypothetical protein YP_004507273.1 PFAM: Protein of unknown function DUF883, ElaB; KEGG: spe:Spro_3718 hypothetical protein YP_004507274.1 KEGG: spe:Spro_3719 transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR YP_004507275.1 KEGG: spe:Spro_3720 alkylhydroperoxidase; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase YP_004507276.1 KEGG: spe:Spro_3721 glutaredoxin-like protein NrdH; TIGRFAM: Glutaredoxin-like protein NrdH; PFAM: Glutaredoxin YP_004507277.1 TIGRFAM: Ribonucleotide reductase Class Ib, NrdI; HAMAP: Ribonucleotide reductase Class Ib, NrdI, bacterial; KEGG: spe:Spro_3722 ribonucleotide reductase stimulatory protein; PFAM: Ribonucleotide reductase Class Ib, NrdI YP_004507278.1 KEGG: spe:Spro_3723 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: Ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase N-terminal; Ribonucleotide reductase large subunit, N-terminal YP_004507279.1 KEGG: spe:Spro_3724 ribonucleotide-diphosphate reductase subunit beta; PFAM: Ribonucleotide reductase YP_004507280.1 PFAM: Plasmid stabilisation system; KEGG: azo:azo3077 hypothetical protein YP_004507281.1 PFAM: CopG-like DNA-binding; KEGG: azo:azo3076 hypothetical protein YP_004507282.1 PFAM: Protein of unknown function DUF1289; KEGG: spe:Spro_3726 hypothetical protein YP_004507283.1 KEGG: spe:Spro_3727 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004507284.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3728 LysR family transcriptional regulator YP_004507285.1 KEGG: spe:Spro_3729 beta-lactamase domain-containing protein YP_004507286.1 PFAM: Patatin; KEGG: ppr:PBPRB1472 hypothetical protein YP_004507287.1 PFAM: 2-hydroxycarboxylate transporter; KEGG: spe:Spro_3730 citrate carrier protein YP_004507288.1 KEGG: spe:Spro_3731 signal transduction histidine kinase regulating citrate/malate metabolism; PFAM: ATP-binding region, ATPase-like; PAS fold; SMART: ATP-binding region, ATPase-like; PAS YP_004507289.1 KEGG: spe:Spro_3732 response regulator receiver/unknown domain-containing protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region YP_004507290.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Glycine betaine/L-proline transport ATP-binding subunit; KEGG: spe:Spro_3733 glycine betaine/L-proline ABC transporter ATPase subunit; PFAM: ABC transporter-like; Cystathionine beta-synthase, core YP_004507291.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_3734 glycine betaine transporter membrane protein YP_004507292.1 PFAM: ABC-type glycine betaine transport system, substrate-binding region; KEGG: spe:Spro_3735 glycine betaine transporter periplasmic subunit YP_004507293.1 PFAM: ABC-type glycine betaine transport system, substrate-binding region; KEGG: spe:Spro_3736 glycine betaine transporter periplasmic subunit YP_004507294.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3737 LysR family transcriptional regulator YP_004507295.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_3738 major facilitator transporter YP_004507296.1 KEGG: spe:Spro_3741 transcriptional repressor MprA; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004507297.1 KEGG: spe:Spro_3742 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004507298.1 KEGG: spe:Spro_3743 efflux pump membrane protein; TIGRFAM: Efflux pump membrane protein Emr; PFAM: Secretion protein HlyD YP_004507299.1 KEGG: spe:Spro_3744 EmrB/QacA family drug resistance transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004507300.1 PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; KEGG: spe:Spro_3745 methyltransferase YP_004507301.1 TIGRFAM: Thioredoxin; KEGG: spe:Spro_3746 thioredoxin 2; PFAM: Thioredoxin domain YP_004507302.1 PFAM: DTW; KEGG: spe:Spro_3747 DTW domain-containing protein YP_004507303.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding; KEGG: spe:Spro_3748 GCN5-related N-acetyltransferase YP_004507304.1 PFAM: Phospholipase D/Transphosphatidylase; KEGG: spe:Spro_3749 phosphatidylserine synthase; SMART: Phospholipase D/Transphosphatidylase YP_004507305.1 KEGG: spe:Spro_3750 hypothetical protein YP_004507306.1 KEGG: spe:Spro_3751 alpha-ketoglutarate transporter; TIGRFAM: Citrate-proton symport; PFAM: General substrate transporter YP_004507307.1 KEGG: spe:Spro_3752 D,D-heptose 1,7-bisphosphate phosphatase; TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; PFAM: Haloacid dehalogenase-like hydrolase YP_004507308.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, methionine import, ATP-binding protein, MetN; KEGG: spe:Spro_3753 DL-methionine transporter ATP-binding subunit; PFAM: ABC transporter-like; NIL domain YP_004507309.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_3754 DL-methionine transporter permease subunit YP_004507310.1 KEGG: spe:Spro_3755 DL-methionine transporter substrate-binding subunit; TIGRFAM: Lipoprotein YaeC; PFAM: NLPA lipoprotein YP_004507311.1 KEGG: spe:Spro_3756 outer membrane lipoprotein YP_004507312.1 KEGG: spe:Spro_3757 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0066; PFAM: Uncharacterised protein family UPF0066 YP_004507313.1 TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; HAMAP: Prolyl-tRNA synthetase; KEGG: spe:Spro_3758 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; YbaK/aminoacyl-tRNA synthetase associated region; Anticodon-binding YP_004507314.1 PFAM: Copper resistance lipoprotein NlpE; KEGG: spe:Spro_3759 hypothetical protein YP_004507315.1 PFAM: Class I peptide chain release factor; KEGG: spe:Spro_3760 peptidyl-tRNA hydrolase domain-containing protein YP_004507316.1 PFAM: YaeQ; KEGG: spe:Spro_3761 YaeQ family protein YP_004507317.1 KEGG: spe:Spro_3762 hypothetical protein; HAMAP: Uncharacterised protein family UPF0253; PFAM: Uncharacterised protein family UPF0253 YP_004507318.1 PFAM: Modulator of Rho-dependent transcription termination; KEGG: spe:Spro_3763 transcriptional antiterminator, Rof YP_004507319.1 PFAM: Cytochrome c, class I; KEGG: spe:Spro_3764 cytochrome c class I YP_004507320.1 TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; Lysidine-tRNA(Ile) synthetase, C-terminal; HAMAP: tRNA(Ile)-lysidine synthase; KEGG: spe:Spro_3765 tRNA(Ile)-lysidine synthetase; PFAM: PP-loop; Lysidine-tRNA(Ile) synthetase, substrate-binding domain YP_004507322.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: spe:Spro_3770 glyoxalase/bleomycin resistance protein/dioxygenase YP_004507323.1 KEGG: spe:Spro_3773 lysine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase, N-terminal; Orn/Lys/Arg decarboxylase, C-terminal YP_004507324.1 PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; KEGG: spe:Spro_3774 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_004507325.1 SMART: Polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: spe:Spro_3775 DNA polymerase III subunit alpha; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type YP_004507326.1 KEGG: spe:Spro_3776 ribonuclease HII; PFAM: Ribonuclease HII/HIII YP_004507327.1 PFAM: Glycosyl transferase, family 19; TIGRFAM: Glycosyl transferase, family 19; HAMAP: Lipid-A-disaccharide synthase; KEGG: spe:Spro_3777 lipid-A-disaccharide synthase YP_004507328.1 PFAM: Bacterial transferase hexapeptide repeat; TIGRFAM: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; HAMAP: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: spe:Spro_3778 UDP-N-acetylglucosamine acyltransferase YP_004507329.1 TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; HAMAP: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; KEGG: spe:Spro_3779 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_004507330.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; KEGG: spe:Spro_3780 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat YP_004507331.1 PFAM: Outer membrane chaperone Skp (OmpH); KEGG: spe:Spro_3781 periplasmic chaperone YP_004507332.1 TIGRFAM: Outer membrane assembly protein, YaeT; HAMAP: Outer membrane protein assembly factor yaeT; KEGG: spe:Spro_3782 outer membrane protein assembly factor YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number YP_004507333.1 TIGRFAM: Peptidase M50, membrane-associated zinc metallopeptidase; PFAM: Peptidase M50; PDZ/DHR/GLGF; KEGG: spe:Spro_3783 zinc metallopeptidase RseP; SMART: PDZ/DHR/GLGF YP_004507334.1 PFAM: Phosphatidate cytidylyltransferase; KEGG: spe:Spro_3784 CDP-diglyceride synthase YP_004507335.1 PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; HAMAP: Undecaprenyl pyrophosphate synthase; KEGG: spe:Spro_3785 undecaprenyl diphosphate synthase YP_004507336.1 PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: spe:Spro_3786 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_004507337.1 TIGRFAM: Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; KEGG: spe:Spro_3787 ribosome recycling factor; PFAM: Ribosome recycling factor YP_004507338.1 KEGG: spe:Spro_3788 uridylate kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Aspartate/glutamate/uridylate kinase YP_004507339.1 TIGRFAM: Translation elongation factor EFTs/EF1B; HAMAP: Elongation factor Ts; KEGG: spe:Spro_3789 elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal YP_004507340.1 KEGG: spe:Spro_3790 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2 YP_004507341.1 TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: spe:Spro_3791 methionine aminopeptidase; PFAM: Peptidase M24, structural domain YP_004507342.1 KEGG: spe:Spro_3792 PII uridylyl-transferase; PFAM: PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; Nucleotidyltransferase; Metal-dependent phosphohydrolase, HD region, subdomain; Amino acid-binding ACT; TIGRFAM: Protein-PII uridylyltransferase; HAMAP: Protein-PII uridylyltransferase; SMART: Metal-dependent phosphohydrolase, HD region YP_004507343.1 TIGRFAM: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; HAMAP: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; KEGG: spe:Spro_3793 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_004507344.1 HAMAP: UPF0325 protein yaeH; KEGG: spe:Spro_3794 hypothetical protein YP_004507345.1 PFAM: Flavodoxin/nitric oxide synthase; KEGG: spe:Spro_3795 flavodoxin YP_004507346.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: spe:Spro_3796 tRNA pseudouridine synthase C YP_004507347.1 PFAM: Protein of unknown function DUF446; KEGG: spe:Spro_3797 hypothetical protein YP_004507348.1 KEGG: spe:Spro_3798 major facilitator transporter; manually curated; PFAM: Major facilitator superfamily MFS-1 YP_004507349.1 KEGG: spe:Spro_3799 SecY interacting protein Syd; HAMAP: Protein syd; PFAM: Syd YP_004507350.1 PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, YqcD; HAMAP: Nitrile oxidoreductase, NADPH-dependent, YqcD; KEGG: spe:Spro_3800 7-cyano-7-deazaguanine reductase YP_004507351.1 PFAM: Conserved hypothetical protein CHP00730; KEGG: spe:Spro_3801 hypothetical protein YP_004507352.1 HAMAP: Uncharacterized exonuclease xni; PFAM: 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; KEGG: spe:Spro_3802 exonuclease IX; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2 YP_004507353.1 HAMAP: YdgE, RNA 2'-O-ribose methyltranserase; KEGG: spe:Spro_3803 RNA 2'-O-ribose methyltransferase YP_004507354.1 PFAM: Protein of unknown function DUF423; KEGG: spe:Spro_3804 hypothetical protein YP_004507355.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3805 DNA-binding transcriptional activator GcvA YP_004507356.1 PFAM: Protein of unknown function DUF903, bacterial; KEGG: spe:Spro_3806 hypothetical protein YP_004507357.1 TIGRFAM: cysteine desulfurase, catalytic subunit CsdA; KEGG: spe:Spro_3807 cysteine sulfinate desulfinase; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004507358.1 KEGG: spe:Spro_3808 Fe-S metabolism associated SufE; TIGRFAM: Cysteine desulfurase, sulphur acceptor subunit CsdE; PFAM: Fe-S metabolism associated SufE YP_004507359.1 PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: spe:Spro_3809 UBA/ThiF-type NAD/FAD binding protein YP_004507360.1 PFAM: MltA; 3D; KEGG: spe:Spro_3810 murein transglycosylase A YP_004507361.1 KEGG: spe:Spro_3811 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic YP_004507362.1 PFAM: Aspartate/glutamate/uridylate kinase; GCN5-related N-acetyltransferase; TIGRFAM: Amino-acid N-acetyltransferase (ArgA); HAMAP: Amino-acid acetyltransferase; KEGG: spe:Spro_3812 N-acetylglutamate synthase YP_004507363.1 TIGRFAM: Exodeoxyribonuclease V, alpha subunit; KEGG: spe:Spro_3813 exonuclease V subunit alpha; PFAM: RNA helicase 1, viral YP_004507364.1 TIGRFAM: Exodeoxyribonuclease V, beta subunit; KEGG: spe:Spro_3814 exonuclease V subunit beta; PFAM: DNA helicase, UvrD/REP type YP_004507365.1 KEGG: spe:Spro_3815 peptidase M16 domain-containing protein; PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal YP_004507366.1 TIGRFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: spe:Spro_3816 exonuclease V subunit gamma; PFAM: Exodeoxyribonuclease V, RecC subunit YP_004507367.1 KEGG: spe:Spro_3817 prepilin peptidase dependent protein c precursor YP_004507368.1 PFAM: Protein of unknown function DUF2509; KEGG: spe:Spro_3818 hypothetical protein YP_004507369.1 KEGG: spe:Spro_3819 prepilin peptidase dependent protein YP_004507370.1 KEGG: spe:Spro_3820 hypothetical protein YP_004507371.1 PFAM: Thymidylate synthase, C-terminal; TIGRFAM: Thymidylate synthase, C-terminal; HAMAP: Thymidylate synthase; KEGG: spe:Spro_3821 thymidylate synthase YP_004507372.1 TIGRFAM: Prolipoprotein diacylglyceryl transferase; HAMAP: Prolipoprotein diacylglyceryl transferase; KEGG: spe:Spro_3822 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase YP_004507373.1 SMART: GAF; TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; KEGG: spe:Spro_3823 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; GAF; PEP-utilising enzyme, mobile region YP_004507374.1 KEGG: spe:Spro_3824 dinucleoside polyphosphate hydrolase; HAMAP: RNA pyrophosphohydrolase; PFAM: NUDIX hydrolase domain YP_004507375.1 TIGRFAM: DNA mismatch repair protein MutH; HAMAP: DNA mismatch repair protein MutH; KEGG: spe:Spro_3825 DNA mismatch repair protein; PFAM: DNA mismatch repair protein MutH, conserved region YP_004507376.1 PFAM: Integral membrane protein TerC; KEGG: spe:Spro_3826 integral membrane protein TerC YP_004507377.1 PFAM: Protein of unknown function DUF903, bacterial; KEGG: spe:Spro_3827 hypothetical protein YP_004507378.1 PFAM: Aldo/keto reductase; KEGG: spe:Spro_3828 aldo-keto reductase YP_004507379.1 KEGG: spe:Spro_3829 lysophospholipid transporter LplT; HAMAP: Lysophospholipid transporter lplT; PFAM: Major facilitator superfamily MFS-1 YP_004507380.1 SMART: Phospholipid/glycerol acyltransferase; HAMAP: Bifunctional protein aas; KEGG: spe:Spro_3830 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; PFAM: AMP-dependent synthetase/ligase; Phospholipid/glycerol acyltransferase YP_004507381.1 KEGG: spe:Spro_3831 molybdopterin oxidoreductase; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region YP_004507382.1 KEGG: spe:Spro_3832 DNA-binding transcriptional regulator GalR; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004507383.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_3833 GCN5-related N-acetyltransferase YP_004507384.1 KEGG: spe:Spro_3834 LacI family transcription regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004507385.1 KEGG: spe:Spro_3835 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004507386.1 TIGRFAM: Diaminopimelate decarboxylase; KEGG: spe:Spro_3836 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_004507387.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3837 DNA-binding transcriptional regulator LysR YP_004507388.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_3838 major facilitator transporter YP_004507389.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3839 LysR family transcriptional regulator YP_004507390.1 KEGG: spe:Spro_3840 beta-lactamase domain-containing protein YP_004507391.1 KEGG: spe:Spro_3841 hypothetical protein YP_004507392.1 KEGG: spe:Spro_3842 hypothetical protein YP_004507393.1 PFAM: ABC transporter, N-terminal; ABC transporter-like; KEGG: spe:Spro_3843 ABC transporter; SMART: ATPase, AAA+ type, core YP_004507394.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_3850 major facilitator transporter YP_004507395.1 KEGG: spe:Spro_3851 hypothetical protein YP_004507396.1 TIGRFAM: Cyclic peptide transporter; PFAM: ABC transporter-like; KEGG: spe:Spro_3852 multidrug transporter membrane component/ATP-binding component; SMART: ATPase, AAA+ type, core YP_004507397.1 PFAM: Integrase, catalytic core, phage; KEGG: xbo:XBJ1_3623 tyrosine recombinase, regulator of FimA YP_004507398.1 KEGG: sbp:Sbal223_0289 LuxR family two component transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004507399.1 KEGG: aha:AHA_1023 LuxR family DNA-binding response regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004507400.1 PFAM: Fimbrial protein, C-terminal; KEGG: esa:ESA_01971 hypothetical protein YP_004507401.1 PFAM: Fimbrial protein, C-terminal; KEGG: see:SNSL254_A3915 long polar fimbrial protein YP_004507402.1 PFAM: Fimbrial biogenesis outer membrane usher protein; KEGG: spe:Spro_2874 fimbrial biogenesis outer membrane usher protein YP_004507403.1 PFAM: Pili assembly chaperone, N-terminal, bacterial; Pili assembly chaperone, C-terminal, bacterial; KEGG: spe:Spro_2873 pili assembly chaperone YP_004507404.1 PFAM: Fimbrial protein, C-terminal; KEGG: kpu:KP1_0597 fimbrial protein YP_004507405.1 PFAM: Integrase, catalytic core, phage; KEGG: plu:plu1991 hypothetical protein YP_004507406.1 PFAM: Phosphopantetheine-binding; KEGG: yen:YE0797 hypothetical protein YP_004507407.1 KEGG: yen:YE0795 acyl-carrier-protein; PFAM: Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, N-terminal YP_004507408.1 KEGG: yen:YE0794 outer-membrane efflux lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004507409.1 PFAM: ABC transporter-like; Protein of unknown function DUF214, permase predicted; KEGG: yen:YE0793 ABC transporter, ATP-binding component; SMART: ATPase, AAA+ type, core YP_004507410.1 KEGG: yen:YE0792 type I secretion protein; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004507411.1 PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; KEGG: yen:YE0791 ABC transporter, ATP-binding component; SMART: ATPase, AAA+ type, core YP_004507412.1 KEGG: yen:YE0790 hypothetical protein YP_004507413.1 PFAM: DSBA oxidoreductase; KEGG: yen:YE0789 thiol:disulfide interchange protein YP_004507414.1 KEGG: yen:YE0788 hypothetical protein YP_004507415.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3853 LysR family transcriptional regulator YP_004507416.1 HAMAP: L-lactate dehydrogenase [cytochrome]; KEGG: spe:Spro_3855 L-lactate dehydrogenase; PFAM: FMN-dependent dehydrogenase YP_004507417.1 KEGG: smt:Smal_1835 choline/carnitine/betaine transporter; TIGRFAM: BCCT transporter; PFAM: BCCT transporter YP_004507418.1 TIGRFAM: Transcriptional repressor BetI; HAMAP: HTH-type transcriptional regulator betI; KEGG: sml:Smlt2239 TetR family regulatory protein; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal YP_004507419.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_3856 LysR family transcriptional regulator YP_004507420.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: spe:Spro_3857 4-oxalocrotonate tautomerase YP_004507421.1 PFAM: ABC transporter-like; ABC transporter, transmembrane region; KEGG: spe:Spro_3858 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004507422.1 KEGG: yen:YE1370A dehydrogenase subunit YP_004507423.1 KEGG: spe:Spro_1808 dehydrogenase subunit YP_004507424.1 KEGG: spe:Spro_1807 gluconate 2-dehydrogenase; PFAM: Cytochrome c, class I YP_004507425.1 KEGG: yen:YE2451 lipoprotein; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004507426.1 KEGG: ypb:YPTS_3653 acid-resistance membrane protein YP_004507427.1 HAMAP: Curved DNA-binding protein; PFAM: Heat shock protein DnaJ, N-terminal; Chaperone DnaJ, C-terminal; KEGG: spe:Spro_3860 curved DNA-binding protein CbpA; SMART: Heat shock protein DnaJ, N-terminal YP_004507428.1 KEGG: spe:Spro_3861 chaperone-modulator protein CbpM YP_004507429.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: agr:AGROH133_14311 transcriptional regulator, LysR family YP_004507430.1 PFAM: Carboxymuconolactone decarboxylase; Alpha/beta hydrolase fold-1; KEGG: aba:Acid345_3042 alpha/beta hydrolase YP_004507431.1 KEGG: spe:Spro_3862 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004507434.1 KEGG: tau:Tola_1062 hypothetical protein YP_004507435.1 KEGG: spe:Spro_3874 hypothetical protein YP_004507437.1 KEGG: yps:YPTB1792 hypothetical protein YP_004507438.1 KEGG: kpn:KPN_01377 excisionase; manually curated; PFAM: Protein of unknown function DUF1233, excisionase YP_004507439.1 KEGG: ecz:ECS88_1153 excisionase YP_004507440.1 KEGG: yen:YE1800 excisionase; manually curated; PFAM: Excisionase-like YP_004507441.1 KEGG: eta:ETA_24200 hypothetical protein YP_004507442.1 KEGG: sei:SPC_1307 gene 13 protein YP_004507443.1 PFAM: Prophage CP4-57 regulatory YP_004507444.1 KEGG: ecq:ECED1_1135 hypothetical protein YP_004507445.1 KEGG: tcx:Tcr_1420 hypothetical protein YP_004507446.1 KEGG: sbm:Shew185_4132 hypothetical protein YP_004507447.1 PFAM: Protein of unknown function DUF927; KEGG: eca:ECA2754 prophage primase YP_004507448.1 KEGG: kpe:KPK_A0075 hypothetical protein YP_004507450.1 KEGG: ecg:E2348C_3903 hypothetical protein YP_004507451.1 PFAM: AntA/AntB antirepressor; KEGG: spe:Spro_3884 AntA/AntB antirepressor domain-containing protein YP_004507452.1 PFAM: Prophage CP4-57 regulatory; KEGG: spe:Spro_3885 phage transcriptional regulator AlpA YP_004507453.1 KEGG: eck:EC55989_0269 hypothetical protein YP_004507455.1 PFAM: Integrase, catalytic core, phage; KEGG: spe:Spro_3887 integrase YP_004507456.1 PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase; KEGG: spe:Spro_3888 lysyl-tRNA synthetase YP_004507457.1 manually curated YP_004507458.1 KEGG: spe:Spro_3890 ssDNA exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1 YP_004507459.1 PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: spe:Spro_3891 thiol:disulfide interchange protein DsbC YP_004507460.1 TIGRFAM: Tyrosine recombinase XerD; HAMAP: Tyrosine recombinase xerD; KEGG: spe:Spro_3892 site-specific tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004507461.1 KEGG: spe:Spro_3893 flavodoxin FldB; TIGRFAM: Flavodoxin, long chain; PFAM: Flavodoxin/nitric oxide synthase YP_004507462.1 PFAM: Uncharacterised protein family, inner membrane CreD; KEGG: spe:Spro_3894 hypothetical protein YP_004507463.1 KEGG: spe:Spro_3895 sensory histidine kinase CreC; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004507464.1 KEGG: spe:Spro_3896 DNA-binding response regulator CreB; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004507465.1 PFAM: Protein of unknown function DUF1434; KEGG: spe:Spro_3897 hypothetical protein YP_004507466.1 PFAM: Protein of unknown function DUF339; KEGG: spe:Spro_3898 hypothetical protein YP_004507467.1 TIGRFAM: Folate-binding, YgfZ; HAMAP: tRNA-modifying protein ygfZ; KEGG: spe:Spro_3899 global regulator; PFAM: Glycine cleavage T-protein, N-terminal YP_004507468.1 KEGG: spe:Spro_3900 hemolysin III family channel protein; TIGRFAM: HylII; PFAM: Hly-III related YP_004507469.1 PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; KEGG: spe:Spro_3901 metal dependent phosphohydrolase YP_004507470.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_3902 major facilitator transporter YP_004507471.1 KEGG: spe:Spro_3903 hypothetical protein YP_004507472.1 PFAM: Amidase; KEGG: spe:Spro_3904 amidase YP_004507473.1 KEGG: spe:Spro_3905 hypothetical protein YP_004507474.1 KEGG: spe:Spro_3906 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004507475.1 KEGG: spe:Spro_3909 hypothetical protein; PFAM: Short-chain dehydrogenase/reductase SDR YP_004507476.1 PFAM: MltA-interacting MipA; KEGG: pfl:PFL_0321 hypothetical protein YP_004507478.1 KEGG: spe:Spro_3910 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004507479.1 KEGG: spe:Spro_3911 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004507480.1 PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; KEGG: spe:Spro_3912 alcohol dehydrogenase YP_004507481.1 TIGRFAM: Glycine cleavage system P-protein; HAMAP: Glycine cleavage system P-protein; KEGG: spe:Spro_3914 glycine dehydrogenase; PFAM: Glycine cleavage system P-protein, N-terminal YP_004507482.1 TIGRFAM: Glycine cleavage H-protein, subgroup; HAMAP: Glycine cleavage H-protein; KEGG: spe:Spro_3915 glycine cleavage system H protein; PFAM: Glycine cleavage H-protein YP_004507483.1 PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; TIGRFAM: Glycine cleavage system T protein; HAMAP: Aminomethyltransferase; KEGG: spe:Spro_3916 glycine cleavage system aminomethyltransferase T YP_004507484.1 KEGG: spe:Spro_3917 hypothetical protein; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: FAD dependent oxidoreductase YP_004507485.1 KEGG: spe:Spro_3918 2-octaprenyl-6-methoxyphenyl hydroxylase; TIGRFAM: 2-polyprenyl-6-methoxyphenol 4-hydroxylase; Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: Monooxygenase, FAD-binding YP_004507486.1 PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; KEGG: spe:Spro_3919 proline aminopeptidase P II YP_004507487.1 KEGG: spe:Spro_3920 hypothetical protein; TIGRFAM: YgfB/YecA protein; HAMAP: UPF0149 protein ygfB YP_004507488.1 manually curated; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: spe:Spro_3922 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase YP_004507489.1 KEGG: spe:Spro_3923 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; Amino acid-binding ACT YP_004507490.1 PFAM: Ribose 5-phosphate isomerase; TIGRFAM: Ribose 5-phosphate isomerase; HAMAP: Ribose-5-phosphate isomerase, subgroup; KEGG: spe:Spro_3924 ribose-5-phosphate isomerase A YP_004507491.1 TIGRFAM: Transcriptional regulator, ArgP; HAMAP: Chromosome initiation inhibitor; KEGG: spe:Spro_3925 chromosome replication initiation inhibitor protein; PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding YP_004507492.1 PFAM: Protein of unknown function DUF541; KEGG: spe:Spro_3926 hypothetical protein YP_004507493.1 TIGRFAM: L-lysine exporter; HAMAP: Arginine exporter protein ArgO; KEGG: spe:Spro_3927 arginine exporter protein; PFAM: Lysine exporter protein (LYSE/YGGA) YP_004507494.1 KEGG: spe:Spro_3928 IclR family transcriptional regulator; PFAM: Transcriptional regulator IclR, C-terminal; Transcriptional regulator IclR, N-terminal; SMART: Transcriptional regulator IclR, N-terminal YP_004507495.1 PFAM: ABC transporter-like; KEGG: spe:Spro_3929 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004507496.1 PFAM: Bacterial inner-membrane translocator; KEGG: spe:Spro_3930 monosaccharide-transporting ATPase YP_004507497.1 KEGG: spe:Spro_3931 hypothetical protein YP_004507498.1 KEGG: spe:Spro_3932 gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region YP_004507499.1 HAMAP: 2,3-diketo-L-gulonate reductase; KEGG: spe:Spro_3933 2,3-diketo-L-gulonate reductase; PFAM: Malate/L-lactate dehydrogenase YP_004507500.1 KEGG: spe:Spro_3934 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00022; PFAM: Conserved hypothetical protein CHP00022 YP_004507501.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_3935 major facilitator transporter YP_004507502.1 KEGG: spe:Spro_3936 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal YP_004507503.1 KEGG: spe:Spro_3937 3-keto-L-gulonate-6-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase, core YP_004507504.1 TIGRFAM: hexulose-6-phosphate isomerase; KEGG: spe:Spro_3938 L-xylulose 5-phosphate 3-epimerase; PFAM: Xylose isomerase, TIM barrel domain YP_004507505.1 TIGRFAM: L-ribulose-5-phosphate 4-epimerase; KEGG: spe:Spro_3939 L-ribulose-5-phosphate 4-epimerase; PFAM: Class II aldolase/adducin, N-terminal YP_004507506.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: spe:Spro_3940 pseudouridine synthase YP_004507507.1 PFAM: Protein of unknown function DUF2058; KEGG: yen:YE2637 hypothetical protein YP_004507508.1 PFAM: Mechanosensitive ion channel MscS; Conserved TM helix; KEGG: spe:Spro_3942 mechanosensitive ion channel MscS YP_004507509.1 PFAM: Protein of unknown function DUF1345; KEGG: spe:Spro_3943 hypothetical protein YP_004507510.1 TIGRFAM: Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype; Ketose-bisphosphate aldolase, class-II; KEGG: spe:Spro_3944 fructose-bisphosphate aldolase; PFAM: Ketose-bisphosphate aldolase, class-II YP_004507511.1 HAMAP: Phosphoglycerate kinase; KEGG: spe:Spro_3945 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase YP_004507512.1 PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; TIGRFAM: D-erythrose-4-phosphate dehydrogenase; HAMAP: D-erythrose-4-phosphate dehydrogenase; KEGG: spe:Spro_3946 erythrose 4-phosphate dehydrogenase YP_004507513.1 PFAM: ABC transporter-like; KEGG: spe:Spro_3947 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004507514.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_3948 binding-protein-dependent transport systems inner membrane component YP_004507515.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: spe:Spro_3949 extracellular solute-binding protein YP_004507516.1 PFAM: Phosphoglycerate mutase; KEGG: hso:HS_1664 phosphoglycerate mutase YP_004507517.1 KEGG: hso:HS_1663 permease; TIGRFAM: Sodium/sulphate symporter; PFAM: Sodium/sulphate symporter YP_004507518.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: hso:HS_1662 LysR family transcriptional regulator YP_004507519.1 TIGRFAM: Transketolase, bacterial-like; KEGG: spe:Spro_3480 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal YP_004507520.1 PFAM: Peptidase M48, Ste24p; KEGG: spe:Spro_3955 peptidase M48 Ste24p YP_004507521.1 KEGG: spe:Spro_3956 hypothetical protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region YP_004507522.1 KEGG: spe:Spro_3957 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004507523.1 HAMAP: Aspartate dehydrogenase, NAD biosynthesis, prokaryotic; KEGG: spe:Spro_3958 L-aspartate dehydrogenase; PFAM: Aspartate dehydrogenase; Aspartate/homoserine dehydrogenase, NAD-binding YP_004507524.1 KEGG: spe:Spro_3959 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004507525.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: spe:Spro_3960 alpha/beta hydrolase fold domain-containing protein YP_004507526.1 PFAM: Cupin 2, conserved barrel; KEGG: spe:Spro_3961 cupin 2 domain-containing protein YP_004507527.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_3962 major facilitator transporter YP_004507528.1 KEGG: spe:Spro_3963 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004507529.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: spe:Spro_3964 glyoxalase/bleomycin resistance protein/dioxygenase YP_004507530.1 KEGG: spe:Spro_3965 IclR family transcriptional regulator; PFAM: Transcriptional regulator IclR, N-terminal; Transcriptional regulator IclR, C-terminal; SMART: Transcriptional regulator IclR, N-terminal YP_004507531.1 KEGG: spe:Spro_3966 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004507532.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: spe:Spro_3967 Rieske (2Fe-2S) domain-containing protein YP_004507533.1 KEGG: spe:Spro_3968 hypothetical protein YP_004507534.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: spe:Spro_3969 Rieske (2Fe-2S) domain-containing protein YP_004507535.1 TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: spe:Spro_3971 23S rRNA pseudouridine synthase F; SMART: RNA-binding S4 YP_004507536.1 PFAM: Ureohydrolase; TIGRFAM: agmatinase; HAMAP: Agmatinase; KEGG: spe:Spro_3972 agmatinase YP_004507539.1 KEGG: spe:Spro_3973 arginine decarboxylase; manually curated; TIGRFAM: Arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; HAMAP: Biosynthetic arginine decarboxylase YP_004507540.1 PFAM: S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthase; KEGG: spe:Spro_3974 S-adenosylmethionine synthetase YP_004507541.1 PFAM: Hok/gef cell toxic protein; KEGG: spe:Spro_0948 Hok/gef cell toxic protein YP_004507542.1 PFAM: Bacterial transport system permease; KEGG: spe:Spro_3976 iron-hydroxamate transporter permease subunit YP_004507543.1 PFAM: Periplasmic binding protein; KEGG: spe:Spro_3977 iron-hydroxamate transporter substrate-binding subunit YP_004507544.1 PFAM: ABC transporter-like; KEGG: spe:Spro_3978 iron-hydroxamate transporter ATP-binding subunit; SMART: ATPase, AAA+ type, core YP_004507545.1 KEGG: rah:Rahaq_3657 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel YP_004507546.1 TIGRFAM: Penicillin-binding protein 1B; KEGG: spe:Spro_3981 penicillin-binding protein 1B; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase YP_004507547.1 TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; DNA/RNA helicase, C-terminal; Helicase-associated region; KEGG: spe:Spro_3982 ATP-dependent RNA helicase HrpB; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004507548.1 KEGG: spe:Spro_3983 2'-5' RNA ligase; TIGRFAM: 2',5' RNA ligase; PFAM: Phosphoesterase, HXTX YP_004507549.1 TIGRFAM: Sugar fermentation stimulation protein; HAMAP: Sugar fermentation stimulation protein; KEGG: spe:Spro_3984 sugar fermentation stimulation protein; PFAM: Sugar fermentation stimulation protein YP_004507550.1 TIGRFAM: RNA polymerase-binding, DksA; KEGG: rah:Rahaq_3662 TraR/DksA family transcriptional regulator YP_004507551.1 TIGRFAM: glutamyl-queuosine tRNA(Asp) synthetase; HAMAP: Glutamyl-Q tRNA(Asp) synthetase; KEGG: spe:Spro_3986 glutamate--tRNA ligase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_004507552.1 PFAM: Polynucleotide adenylyltransferase region; manually curated; KEGG: spe:Spro_3987 poly(A) polymerase I; TIGRFAM: Poly(A) polymerase, PcnB YP_004507553.1 TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: spe:Spro_3988 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_004507554.1 KEGG: spe:Spro_3989 sensor protein QseC; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region YP_004507555.1 KEGG: spe:Spro_3990 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004507556.1 PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; KEGG: spe:Spro_3991 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_004507557.1 TIGRFAM: Pantoate-beta-alanine ligase; HAMAP: Pantoate-beta-alanine ligase; KEGG: spe:Spro_3992 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_004507558.1 PFAM: Aspartate decarboxylase; TIGRFAM: Aspartate decarboxylase; HAMAP: Aspartate decarboxylase; KEGG: spe:Spro_3993 aspartate alpha-decarboxylase YP_004507559.1 PFAM: Polysaccharide deacetylase; KEGG: spe:Spro_3994 polysaccharide deacetylase YP_004507560.1 PFAM: ABC-2 type transporter; KEGG: spe:Spro_3995 ABC-2 type transporter YP_004507561.1 PFAM: ABC transporter-like; KEGG: spe:Spro_3996 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004507562.1 KEGG: spe:Spro_3997 carbonate dehydratase; PFAM: Carbonic anhydrase YP_004507563.1 TIGRFAM: Hypoxanthine phosphoribosyl transferase; KEGG: spe:Spro_3998 hypoxanthine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_004507564.1 PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; KEGG: spe:Spro_3999 multicopper oxidase YP_004507565.1 KEGG: spe:Spro_4000 hypothetical protein YP_004507566.1 TIGRFAM: Spermine synthase; HAMAP: Spermidine synthase; KEGG: spe:Spro_4001 spermidine synthase; PFAM: Spermine synthase YP_004507567.1 PFAM: S-adenosylmethionine decarboxylase, bacterial/archaeal; TIGRFAM: S-adenosylmethionine decarboxylase, bacterial; HAMAP: S-adenosylmethionine decarboxylase proenzyme; KEGG: spe:Spro_4002 S-adenosylmethionine decarboxylase YP_004507568.1 KEGG: spe:Spro_4007 hypothetical protein; HAMAP: UPF0231 protein yacL; PFAM: Uncharacterised conserved protein UCP006287 YP_004507569.1 TIGRFAM: Aconitase B, bacterial; KEGG: spe:Spro_4008 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; PFAM: Aconitase B, N-terminal, bacterial; Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YP_004507570.1 TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: spe:Spro_4009 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004507571.1 TIGRFAM: Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex; KEGG: spe:Spro_4010 dihydrolipoamide acetyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004507572.1 TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type; KEGG: spe:Spro_4011 pyruvate dehydrogenase subunit E1; PFAM: Transketolase, N-terminal YP_004507573.1 KEGG: spe:Spro_4012 transcriptional regulator PdhR; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR YP_004507574.1 PFAM: Amino acid permease-associated region; KEGG: spe:Spro_4013 amino acid permease-associated protein YP_004507575.1 KEGG: spe:Spro_4014 sugar (glycoside-pentoside-hexuronide) transporter; TIGRFAM: Sodium:galactoside symporter; PFAM: Major facilitator superfamily MFS-1 YP_004507576.1 KEGG: spe:Spro_4015 alpha-N-arabinofuranosidase; PFAM: Glycoside hydrolase, family 43 YP_004507577.1 KEGG: spe:Spro_4016 gluconate 2-dehydrogenase; PFAM: Cytochrome c, class I YP_004507578.1 PFAM: [2Fe-2S]-binding; Ferredoxin; KEGG: spe:Spro_4017 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_004507579.1 PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; KEGG: spe:Spro_4018 aldehyde oxidase and xanthine dehydrogenas YP_004507580.1 KEGG: spe:Spro_4019 hypothetical protein YP_004507581.1 PFAM: XdhC- CoxI; KEGG: spe:Spro_4020 hypothetical protein YP_004507582.1 KEGG: spe:Spro_4021 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004507583.1 TIGRFAM: Fe-S type hydro-lyases tartrate/fumarate beta region; Fe-S type hydro-lyases tartrate/fumarate alpha region; KEGG: spe:Spro_4022 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region YP_004507584.1 manually curated; HAMAP: Protein sprT; KEGG: spe:Spro_4023 hypothetical protein; SMART: Protein of unknown function SprT YP_004507585.1 KEGG: spe:Spro_4024 deoxyribonuclease I; PFAM: Endonuclease I YP_004507586.1 KEGG: spe:Spro_4025 hypothetical protein; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; PFAM: Ribosomal RNA small subunit methyltransferase E YP_004507587.1 PFAM: Prokaryotic glutathione synthetase, ATP-binding; Prokaryotic glutathione synthetase, N-terminal; TIGRFAM: Glutathione synthetase, prokaryotic; HAMAP: Glutathione synthetase, prokaryotic; KEGG: spe:Spro_4026 glutathione synthetase YP_004507588.1 KEGG: spe:Spro_4027 hypothetical protein; HAMAP: Protein of unknown function DUF179; PFAM: Protein of unknown function DUF179 YP_004507589.1 SMART: Resolvase, RNase H-like fold; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; KEGG: spe:Spro_4028 Holliday junction resolvase-like protein; HAMAP: Holliday junction resolvase; PFAM: Resolvase, holliday junction-type, YqgF-like YP_004507590.1 TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: spe:Spro_4029 twitching motility protein; SMART: ATPase, AAA+ type, core YP_004507591.1 KEGG: spe:Spro_4030 alanine racemase domain-containing protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal YP_004507592.1 TIGRFAM: Delta 1-pyrroline-5-carboxylate reductase; KEGG: spe:Spro_4031 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent YP_004507593.1 PFAM: Protein of unknown function YGGT; KEGG: spe:Spro_4032 hypothetical protein YP_004507594.1 TIGRFAM: Conserved hypothetical protein CHP00251; HAMAP: Protein of unknown function DUF167; KEGG: spe:Spro_4033 hypothetical protein; PFAM: Protein of unknown function DUF167 YP_004507595.1 PFAM: Ham1-like protein; TIGRFAM: Ham1-like protein; HAMAP: Nucleoside-triphosphatase rdgB; KEGG: spe:Spro_4034 deoxyribonucleotide triphosphate pyrophosphatase YP_004507596.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM; HemN, C-terminal; KEGG: spe:Spro_4035 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_004507597.1 KEGG: spe:Spro_4037 hypothetical protein YP_004507598.1 KEGG: spe:Spro_4038 hypothetical protein YP_004507599.1 KEGG: spe:Spro_4039 hypothetical protein YP_004507600.1 PFAM: Glutaminase, core; TIGRFAM: glutaminase A; HAMAP: Glutaminase, core; KEGG: spe:Spro_4040 glutaminase YP_004507601.1 PFAM: Protein of unknown function DUF469; KEGG: spe:Spro_4041 hypothetical protein YP_004507602.1 TIGRFAM: tRNA (guanine-N-7) methyltransferase; HAMAP: tRNA (guanine-N(7)-)-methyltransferase; KEGG: spe:Spro_4042 tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase YP_004507603.1 TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; KEGG: spe:Spro_4043 adenine DNA glycosylase; SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif YP_004507604.1 KEGG: spe:Spro_4044 hypothetical protein; HAMAP: Fe(II) trafficking protein YggX; PFAM: Fe(II) trafficking protein YggX YP_004507605.1 KEGG: spe:Spro_4045 murein transglycosylase C; HAMAP: Membrane-bound lytic murein transglycosylase C; PFAM: Lytic transglycosylase-like, catalytic YP_004507606.1 TIGRFAM: 2-methylcitrate dehydratase PrpD; KEGG: ecz:ECS88_0345 2-methylcitrate dehydratase; PFAM: MmgE/PrpD YP_004507607.1 TIGRFAM: 2-methylcitrate synthase/citrate synthase type I; KEGG: esc:Entcl_1378 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase-like YP_004507608.1 TIGRFAM: Methylisocitrate lyase; KEGG: sei:SPC_0378 2-methylisocitrate lyase; PFAM: Isocitrate lyase/phosphorylmutase YP_004507609.1 TIGRFAM: Signal transduction response regulator, propionate catabolism, transcriptional regulator PrpR; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, propionate catabolism activator, N-terminal; Helix-turn-helix, Fis-type; KEGG: cko:CKO_02831 hypothetical protein; SMART: ATPase, AAA+ type, core YP_004507610.1 KEGG: spe:Spro_4047 ornithine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase, N-terminal; Orn/Lys/Arg decarboxylase, C-terminal YP_004507611.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: rah:Rahaq_0965 alpha/beta hydrolase fold protein YP_004507612.1 KEGG: rah:Rahaq_0964 beta-lactamase domain protein YP_004507613.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rah:Rahaq_0963 LysR family transcriptional regulator YP_004507614.1 PFAM: Helix-turn-helix, HxlR type; KEGG: azl:AZL_019780 HTH-type transcriptional regulator YP_004507615.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: sma:SAV_7198 hydrolase YP_004507617.1 PFAM: Transcription regulator LuxR, C-terminal; KEGG: spe:Spro_0399 LuxR family transcriptional regulator YP_004507618.1 KEGG: spe:Spro_0398 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004507619.1 PFAM: Cation/H+ exchanger; KEGG: pfl:PFL_3608 sodium/hyrdogen antiporter YP_004507620.1 PFAM: Flavin reductase-like, FMN-binding YP_004507621.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: bpd:BURPS668_A2888 PrnD YP_004507622.1 PFAM: FAD dependent oxidoreductase; KEGG: bac:BamMC406_5266 FAD dependent oxidoreductase YP_004507623.1 PFAM: Protein of unknown function DUF1864; KEGG: bac:BamMC406_5265 hypothetical protein YP_004507624.1 PFAM: Tryptophan halogenase; KEGG: bpl:BURPS1106A_A2733 tryptophan halogenase PrnA YP_004507625.1 KEGG: rer:RER_05570 hypothetical protein YP_004507626.1 PFAM: ABC-2 type transporter; KEGG: xbo:XBJ1_2944 hypothetical protein YP_004507627.1 PFAM: ABC transporter-like; KEGG: xbo:XBJ1_2945 ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004507628.1 PFAM: Condensation domain; KEGG: scl:sce8256 non-ribosomal peptide synthetase YP_004507629.1 KEGG: sur:STAUR_4158 polyketide synthase subunit; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; Acyl transferase; Polyketide synthase, KR; Phosphopantetheine-binding YP_004507630.1 TIGRFAM: Amino acid adenylation; KEGG: hoh:Hoch_1748 amino acid adenylation protein; PFAM: AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding YP_004507631.1 TIGRFAM: Amino acid adenylation; Non-ribosomal peptide synthase; KEGG: bcg:BCG9842_B2873 bacitracin synthetase 1; PFAM: AMP-dependent synthetase/ligase; Phosphopantetheine-binding; Condensation domain YP_004507632.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: xbo:XBJ1_2948 NAD(P)-binding amidase-type enzyme with nitrilase/N-carbamoyl-D-aminoacid amidohydrolase YP_004507633.1 KEGG: xbo:XBJ1_2949 hypothetical protein; TIGRFAM: Thioester reductase; PFAM: Male sterility, NAD-binding YP_004507634.1 KEGG: xbo:XBJ1_2950 3-oxoacyl-[acyl-carrier-protein] reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004507635.1 TIGRFAM: PfaD family protein; KEGG: pay:PAU_00916 hypothetical protein; PFAM: Aminotransferase class-III; 2-nitropropane dioxygenase, NPD YP_004507636.1 KEGG: pay:PAU_00915 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_004507637.1 TIGRFAM: Polyketide-type polyunsaturated fatty acid synthase, PfaA; KEGG: xbo:XBJ1_2953 hypothetical protein; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; Acyl transferase; Polyketide synthase, KR YP_004507638.1 KEGG: pay:PAU_00912 hypothetical protein YP_004507639.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: ctt:CtCNB1_0139 membrane protein spanning subunit YP_004507640.1 PFAM: ABC transporter-like; KEGG: agr:AGROH133_14945 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004507641.1 PFAM: Secretion protein HlyD; KEGG: ccs:CCNA_02174 multidrug resistance efflux pump YP_004507642.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: plu:plu0992 4'-phosphopantetheinyl transferase YP_004507643.1 KEGG: ter:Tery_3479 hypothetical protein YP_004507644.1 KEGG: aca:ACP_2295 pyridoxal-dependent decarboxylase conserved domain protein; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase YP_004507645.1 KEGG: mme:Marme_2119 hypothetical protein YP_004507647.1 KEGG: kva:Kvar_2762 thiamine pyrophosphate protein TPP binding domain protein; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004507648.1 KEGG: bgl:bglu_2g19760 hypothetical protein YP_004507649.1 PFAM: AIG2-like; KEGG: bgl:bglu_2g19790 hypothetical protein YP_004507651.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: bgl:bglu_2g19800 glutathione S-transferase, N-terminal domain-containing protein YP_004507652.1 KEGG: bba:Bd1131 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV YP_004507653.1 KEGG: bgl:bglu_2g19700 mandelate racemase/muconate lactonizing enzyme-like protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal YP_004507654.1 KEGG: bgl:bglu_2g19710 benzoate transporter; TIGRFAM: Benzoate membrane transport protein; PFAM: Benzoate membrane transport protein YP_004507655.1 TIGRFAM: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase; KEGG: bgl:bglu_2g19730 Nrd protein YP_004507656.1 TIGRFAM: Cystathionine beta-lyase, bacterial; KEGG: bgl:bglu_2g19740 cystathionine beta-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004507657.1 PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; TIGRFAM: Dihydroxy-acid dehydratase; HAMAP: Dihydroxy-acid dehydratase; KEGG: bgl:bglu_2g19750 dihydroxy-acid dehydratase YP_004507658.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: zmn:Za10_1439 transcriptional regulator, LysR family YP_004507660.1 KEGG: spe:Spro_2440 NifA subfamily transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; GAF YP_004507661.1 KEGG: spe:Spro_2439 hydrogenase expression/formation protein HypE; TIGRFAM: Hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal YP_004507662.1 KEGG: spe:Spro_2438 hydrogenase expression/formation protein HypD; TIGRFAM: Hydrogenase formation HypD protein; PFAM: Hydrogenase formation HypD protein YP_004507663.1 KEGG: spe:Spro_2437 hydrogenase assembly chaperone HypC/HupF; TIGRFAM: Hydrogenase expression/formation protein, HupF/HypC; PFAM: Hydrogenase expression/formation protein, HupF/HypC YP_004507664.1 KEGG: spe:Spro_2436 hydrogenase nickel incorporation protein HypB; TIGRFAM: Hydrogenase accessory protein HypB; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like YP_004507665.1 TIGRFAM: Hydrogenase nickel incorporation protein HypA/HybF; HAMAP: Hydrogenase nickel incorporation protein HypA/HybF; KEGG: spe:Spro_2435 hydrogenase nickel incorporation protein; PFAM: Hydrogenase nickel incorporation protein HypA/HybF YP_004507666.1 KEGG: spe:Spro_2434 formate hydrogenlyase regulatory protein HycA YP_004507667.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: spe:Spro_2433 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004507668.1 KEGG: spe:Spro_2432 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004507669.1 KEGG: spe:Spro_2431 respiratory-chain NADH dehydrogenase subunit 1 YP_004507670.1 PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; Nickel-dependent hydrogenase, large subunit; NADH-quinone oxidoreductase, subunit D; KEGG: spe:Spro_2430 NADH dehydrogenase (ubiquinone) 30 kDa subunit YP_004507671.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: spe:Spro_2429 formate hydrogenlyase complex iron-sulfur subunit YP_004507672.1 PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; KEGG: spe:Spro_2428 NADH ubiquinone oxidoreductase 20 kDa subunit YP_004507673.1 PFAM: Formate hydrogenlyase maturation HycH; KEGG: spe:Spro_2427 formate hydrogenlyase maturation HycH YP_004507674.1 KEGG: spe:Spro_2426 hydrogenase 3 maturation protease; TIGRFAM: Peptidase A31, hydrogenase maturation protease HycI; Peptidase A31, hydrogen uptake protein; PFAM: Peptidase A31, hydrogen uptake protein YP_004507675.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: spe:Spro_2425 electron transport protein HydN YP_004507676.1 TIGRFAM: Formate dehydrogenase, alpha subunit; KEGG: spe:Spro_2424 formate dehydrogenase subunit alpha; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region YP_004507677.1 KEGG: spe:Spro_2423 (NiFe) hydrogenase maturation protein HypF; TIGRFAM: Hydrogenase maturation factor, HypF-type; PFAM: Sua5/YciO/YrdC, N-terminal; Acylphosphatase-like; Zinc finger, HypF-type YP_004507678.1 KEGG: spe:Spro_2422 high-affinity nickel-transporter; TIGRFAM: Nickel/cobalt transporter, high-affinity, bacteria; PFAM: Nickel/cobalt transporter, high-affinity YP_004507679.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_4192 GCN5-related N-acetyltransferase YP_004507680.1 KEGG: spe:Spro_4193 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004507681.1 PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: spe:Spro_4194 cytosine/purines uracil thiamine allantoin permease YP_004507682.1 PFAM: NIPSNAP; KEGG: rlg:Rleg_2901 NIPSNAP family containing protein YP_004507683.1 SMART: Helix-turn-helix type 3; KEGG: spe:Spro_4195 XRE family transcriptional regulator YP_004507684.1 KEGG: spe:Spro_4196 hypothetical protein; TIGRFAM: Protein of unknown function DUF165; PFAM: Protein of unknown function DUF165 YP_004507685.1 PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, YqcD; HAMAP: Nitrile oxidoreductase, NADPH-dependent, YqcD; KEGG: spe:Spro_4197 7-cyano-7-deazaguanine reductase YP_004507686.1 TIGRFAM: Phospholipase C, phosphocholine-specific; Twin-arginine translocation pathway, signal sequence; KEGG: spe:Spro_4198 phospholipase C; PFAM: Phosphoesterase; Protein of unknown function DUF756 YP_004507687.1 PFAM: Virulence-related outer membrane protein; KEGG: ent:Ent638_3136 virulence-related outer membrane protein YP_004507688.1 SMART: Helix-turn-helix type 3; KEGG: rva:Rvan_0295 helix-turn-helix domain protein YP_004507689.1 PFAM: Protein of unknown function DUF1228; KEGG: esc:Entcl_1548 hypothetical protein YP_004507691.1 PFAM: Virulence-related outer membrane protein; KEGG: ent:Ent638_3136 virulence-related outer membrane protein YP_004507693.1 PFAM: Protein of unknown function DUF638, haemagglutinin/haemolysin KEGG: rah:Rahaq_4220 filamentous hemagglutinin family outer membrane protein YP_004507694.1 KEGG: esc:Entcl_4323 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF596 YP_004507695.1 KEGG: cro:ROD_49941 haemolysin/haemagglutinin YP_004507696.1 KEGG: dze:Dd1591_1922 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004507697.1 PFAM: Protein of unknown function DUF1813, HSP20-like; KEGG: pva:Pvag_0917 hypothetical protein YP_004507698.1 KEGG: yen:YE3452 hypothetical protein YP_004507699.1 KEGG: cro:ROD_49941 haemolysin/haemagglutinin; TIGRFAM: Filamentous haemagglutinin, N-terminal, bacterial; Adhesin HecA 20-residue repeat x2; PFAM: Filamentous haemagglutinin, N-terminal, bacterial; Filamentous haemagglutinin, bacterial; Protein of unknown function DUF638, haemagglutinin/haemolysin YP_004507700.1 PFAM: RTX toxin-activating protein C, bacteria; KEGG: cro:ROD_49931 haemolysin activator HlyC YP_004507701.1 PFAM: Polypeptide-transport-associated, ShlB-type; Haemolysin activator HlyB; KEGG: epy:EpC_28900 hemolysin activator protein YP_004507702.1 KEGG: spe:Spro_4203 aminoimidazole riboside kinase; PFAM: Carbohydrate/purine kinase YP_004507703.1 KEGG: spe:Spro_4204 hypothetical protein YP_004507704.1 TIGRFAM: Phosphotransferase system, sucrose-specific IIBC component; Phosphotransferase system, glucose-like IIB component; Phosphotransferase system, maltose/glucose-specific IIC component; KEGG: spe:Spro_4205 PTS system sucrose-specific transporter subunit IIBC; PFAM: Phosphotransferase system, EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site YP_004507705.1 TIGRFAM: Sucrose-6-phosphate hydrolase; PFAM: Glycosyl hydrolases family 32, N-terminal; Glycosyl hydrolase 32, C-terminal; KEGG: spe:Spro_4206 sucrose-6-phosphate hydrolase; SMART: Glycoside hydrolase, family 32 YP_004507706.1 TIGRFAM: D-fructose-responsive transcription factor; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; KEGG: spe:Spro_4207 LacI family transcription regulator; SMART: HTH transcriptional regulator, LacI YP_004507707.1 PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; KEGG: rah:Rahaq_3641 shikimate dehydrogenase substrate binding domain protein YP_004507708.1 KEGG: spe:Spro_4210 TonB system transport protein ExbD type-1; TIGRFAM: TonB system transport protein ExbD type-1; PFAM: Biopolymer transport protein ExbD/TolR YP_004507709.1 KEGG: spe:Spro_4211 TonB-system energizer ExbB type-1; TIGRFAM: TonB-system energizer ExbB type-1; PFAM: MotA/TolQ/ExbB proton channel YP_004507710.1 TIGRFAM: Cystathionine beta-lyase, bacterial; KEGG: spe:Spro_4212 cystathionine beta-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004507711.1 PFAM: SNARE associated Golgi protein; KEGG: spe:Spro_4213 hypothetical protein YP_004507712.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: enc:ECL_00005 LysR family transcriptional regulator YP_004507713.1 KEGG: enc:ECL_00006 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004507714.1 KEGG: spe:Spro_4214 AraC family transcriptional regulator; PFAM: AraC-type transcriptional regulator, N-terminal; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004507715.1 KEGG: spe:Spro_4215 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type YP_004507716.1 KEGG: spe:Spro_4216 2,5-diketo-D-gluconate reductase A; PFAM: Aldo/keto reductase YP_004507717.1 TIGRFAM: Glycoside hydrolase, family 1, beta-glucosidase; KEGG: spe:Spro_4221 beta-glucosidase; PFAM: Glycoside hydrolase, family 1 YP_004507718.1 PFAM: Phosphotransferase system, lactose/cellobiose-specific IIA subunit; KEGG: spe:Spro_4222 PTS system lactose/cellobiose-specific transporter subunit IIA YP_004507719.1 TIGRFAM: Phosphotransferase system, lactose/cellobiose IIC component; KEGG: spe:Spro_4223 PTS system lactose/cellobiose family transporter subunit IIC; PFAM: Phosphotransferase system, EIIC YP_004507720.1 PFAM: Phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: spe:Spro_4224 PTS system lactose/cellobiose-specific transporter subunit IIB YP_004507721.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: spe:Spro_4233 lytic transglycosylase catalytic YP_004507722.1 HAMAP: UPF0313 protein ygiQ; PFAM: Radical SAM N-terminal; Radical SAM; KEGG: spe:Spro_4234 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB YP_004507723.1 PFAM: Carbohydrate/purine kinase; KEGG: dda:Dd703_3608 PfkB domain protein YP_004507724.1 KEGG: spe:Spro_4254 nucleoside transporter; TIGRFAM: Nucleoside:H+ symporter; PFAM: Nucleoside:H+ symporter YP_004507725.1 TIGRFAM: Purine nucleotide phosphorylase; Inosine guanosine/xanthosine phosphorylase; KEGG: spe:Spro_4255 purine nucleoside phosphorylase; PFAM: Nucleoside phosphorylase YP_004507726.1 KEGG: spe:Spro_4256 DNA-binding transcriptional activator XapR; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR YP_004507727.1 PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; KEGG: spe:Spro_4257 repressor protein for FtsI YP_004507728.1 SMART: Phospholipid/glycerol acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; KEGG: spe:Spro_4258 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Phospholipid/glycerol acyltransferase YP_004507729.1 SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; TIGRFAM: DNA topoisomerase IV, subunit A, Gram-negative; KEGG: spe:Spro_4259 DNA topoisomerase IV subunit A; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YP_004507730.1 PFAM: Flavodoxin-like fold; KEGG: spe:Spro_4260 NAD(P)H dehydrogenase (quinone) YP_004507731.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: spe:Spro_4261 antibiotic biosynthesis monooxygenase YP_004507732.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_4262 LysR family transcriptional regulator YP_004507733.1 SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like; TIGRFAM: DNA topoisomerase IV, subunit B, Gram-negative; KEGG: spe:Spro_4263 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; DNA topoisomerase, type IIA, subunit B, C-terminal YP_004507734.1 PFAM: Uncharacterised protein family UPF0227; KEGG: spe:Spro_4264 esterase YqiA YP_004507735.1 PFAM: Calcineurin-like phosphoesterase C-terminal; Metallophosphoesterase; KEGG: spe:Spro_4265 cyclic 3',5'-adenosine monophosphate phosphodiesterase YP_004507736.1 PFAM: Protein of unknown function DUF1249; KEGG: spe:Spro_4266 hypothetical protein YP_004507737.1 TIGRFAM: Nucleoside diphosphate pyrophosphatase; KEGG: spe:Spro_4267 ADP-ribose pyrophosphatase NudF; PFAM: NUDIX hydrolase domain YP_004507738.1 KEGG: spe:Spro_4268 outer membrane channel protein; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein YP_004507739.1 KEGG: spe:Spro_4269 DNA-binding transcriptional regulator DhaR; PFAM: RNA polymerase sigma factor 54, interaction; PAS fold; GAF; Helix-turn-helix, Fis-type; SMART: PAS YP_004507740.1 TIGRFAM: Dihydroxyacetone kinase, subunit phosphotransferase; Phosphotransferase system, phosphocarrier HPr protein; KEGG: spe:Spro_4270 dihydroxyacetone kinase subunit M; PFAM: Phosphotransferase system, fructose subfamily IIA component; Phosphotransferase system, phosphocarrier HPr protein; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile region YP_004507741.1 KEGG: spe:Spro_4271 dihydroxyacetone kinase, L subunit; TIGRFAM: Dihydroxyacetone kinase, subunit L; PFAM: Dak phosphatase YP_004507742.1 TIGRFAM: Dihydroxyacetone kinase DhaK, subunit 1; KEGG: spe:Spro_4272 dihydroxyacetone kinase subunit DhaK; PFAM: Dak kinase YP_004507743.1 KEGG: spe:Spro_4273 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type YP_004507744.1 manually curated; HAMAP: UPF0441 protein ygiB; KEGG: spe:Spro_4274 hypothetical protein; PFAM: Protein of unknown function DUF1190 YP_004507745.1 KEGG: spe:Spro_4275 glutathionylspermidine synthase; PFAM: Glutathionylspermidine synthase YP_004507746.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: spe:Spro_4284 hypothetical protein YP_004507747.1 manually curated; HAMAP: Zinc transporter zupT; KEGG: spe:Spro_4285 zinc transporter ZupT; PFAM: Zinc/iron permease YP_004507748.1 PFAM: Alkaline phosphatase; KEGG: rva:Rvan_1563 alkaline phosphatase; SMART: Alkaline phosphatase YP_004507749.1 TIGRFAM: DHBP synthase RibB; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase; KEGG: spe:Spro_4286 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: DHBP synthase RibB YP_004507750.1 PFAM: Protein of unknown function DUF526; KEGG: spe:Spro_4287 hypothetical protein YP_004507751.1 PFAM: Amino acid permease-associated region; KEGG: spe:Spro_4288 inner membrane protein YjeH YP_004507752.1 TIGRFAM: RfaE bifunctional protein, domain I; RfaE bifunctional protein, domain II; Cytidyltransferase-related; HAMAP: Bifunctional protein hldE; KEGG: spe:Spro_4289 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; PFAM: Carbohydrate/purine kinase; Cytidylyltransferase YP_004507753.1 HAMAP: Glutamate-ammonia-ligase adenylyltransferase; KEGG: spe:Spro_4290 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; PFAM: Glutamate-ammonia ligase adenylyltransferase; PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase YP_004507754.1 PFAM: Adenylate cyclase; KEGG: spe:Spro_4291 adenylate cyclase YP_004507755.1 SMART: Bacterial SH3-like region; KEGG: spe:Spro_4292 signal transduction protein YP_004507756.1 SMART: Metal-dependent phosphohydrolase, HD region; HAMAP: Multifunctional CCA protein; KEGG: spe:Spro_4293 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; PFAM: Polynucleotide adenylyltransferase region; Metal-dependent phosphohydrolase, HD region, subdomain YP_004507757.1 TIGRFAM: Bacitracin resistance protein BacA; HAMAP: Undecaprenyl-diphosphatase; KEGG: spe:Spro_4294 undecaprenyl pyrophosphate phosphatase; PFAM: Bacitracin resistance protein BacA YP_004507758.1 SMART: Dihydroneopterin aldolase; TIGRFAM: Dihydroneopterin aldolase; Dihydroneopterin aldolase subgroup; KEGG: spe:Spro_4295 bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; PFAM: Dihydroneopterin aldolase YP_004507759.1 PFAM: Protein of unknown function DUF205; manually curated; TIGRFAM: Membrane protein YgiH; KEGG: ypz:YPZ3_0607 hypothetical protein; HAMAP: Protein of unknown function DUF205 YP_004507760.1 PFAM: Peptidase M22, glycoprotease; TIGRFAM: glycoprotease GCP; Peptidase M22, glycoprotease, subgroup; HAMAP: O-sialoglycoprotein endopeptidase; KEGG: spe:Spro_4297 DNA-binding/iron metalloprotein/AP endonuclease YP_004507761.1 TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: rah:Rahaq_0614 ribosomal protein S21; PFAM: Ribosomal protein S21 YP_004507762.1 TIGRFAM: DNA primase, DnaG; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; DNA primase, DnaB-helicase binding domain; DNA primase DnaG, DnaB-binding; KEGG: spe:Spro_4299 DNA primase; SMART: DNA primase DnaG, DnaB-binding; Zinc finger, CHC2-type; Toprim domain, subgroup YP_004507763.1 manually curated; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; KEGG: spe:Spro_4300 RNA polymerase sigma factor RpoD; PFAM: RNA polymerase sigma factor 70, non-essential region; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4 YP_004507764.1 PFAM: Uracil-DNA glycosylase-like; KEGG: spe:Spro_4301 G/U mismatch-specific DNA glycosylase YP_004507765.1 PFAM: HPP; KEGG: spe:Spro_4302 HPP family protein YP_004507766.1 PFAM: Glutathione S-transferase, N-terminal; KEGG: spe:Spro_4303 glutathione S-transferase domain-containing protein YP_004507767.1 PFAM: Amino acid transporter, transmembrane; KEGG: spe:Spro_4304 aromatic amino acid permease YP_004507768.1 TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: spe:Spro_4305 succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004507769.1 TIGRFAM: 4-aminobutyrate aminotransferase, bacterial; KEGG: spe:Spro_4306 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III YP_004507770.1 KEGG: spe:Spro_4307 transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/II; SMART: HTH transcriptional regulator, GntR YP_004507771.1 KEGG: spe:Spro_4308 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004507772.1 KEGG: spe:Spro_4309 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; HI0933-like protein YP_004507773.1 HAMAP: rRNA (guanine-N2-)-methyltransferase, RsmD; KEGG: spe:Spro_4312 rRNA (guanine-N(2)-)-methyltransferase; PFAM: Methyltransferase small YP_004507774.1 PFAM: Protein of unknown function DUF45; KEGG: spe:Spro_4315 hypothetical protein YP_004507775.1 PFAM: Oxidoreductase, N-terminal; KEGG: spe:Spro_4316 oxidoreductase domain-containing protein YP_004507776.1 PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: spe:Spro_4317 glutamine amidotransferase class-I YP_004507777.1 KEGG: spe:Spro_4318 integral membrane protein TerC; TIGRFAM: integral membrane protein, TerC family; PFAM: Integral membrane protein TerC YP_004507778.1 KEGG: spe:Spro_4319 serine/threonine transporter SstT; HAMAP: Serine/threonine transporter sstT; PFAM: Sodium:dicarboxylate symporter YP_004507779.1 PFAM: Protein of unknown function, inner membrane,YgjV; KEGG: yen:YE3705 hypothetical protein YP_004507780.1 KEGG: spe:Spro_4320 altronate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase, C-terminal; SAF domain YP_004507781.1 HAMAP: Uronate isomerase; KEGG: spe:Spro_4321 glucuronate isomerase; PFAM: Uronate isomerase YP_004507782.1 KEGG: spe:Spro_4322 D-galactonate transporter; TIGRFAM: D-galactonate transporter; PFAM: Major facilitator superfamily MFS-1 YP_004507783.1 KEGG: spe:Spro_4323 DNA-binding transcriptional repressor ExuR; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR YP_004507784.1 KEGG: spe:Spro_4324 lipoprotein YP_004507785.1 PFAM: SNARE associated Golgi protein; KEGG: spe:Spro_4325 hypothetical protein YP_004507786.1 KEGG: spe:Spro_4326 hypothetical protein YP_004507787.1 PFAM: Protein of unknown function DUF1090; KEGG: spe:Spro_4327 hypothetical protein YP_004507788.1 PFAM: Protein of unknown function DUF883, ElaB; KEGG: spe:Spro_4328 hypothetical protein YP_004507789.1 PFAM: Protein of unknown function DUF2311, membrane; KEGG: spe:Spro_4329 hypothetical protein YP_004507790.1 KEGG: spe:Spro_4330 hypothetical protein YP_004507791.1 PFAM: DoxX; KEGG: spe:Spro_4331 DoxX family protein YP_004507792.1 KEGG: spe:Spro_4332 hypothetical protein YP_004507793.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: spe:Spro_4333 LysR family transcriptional regulator YP_004507794.1 PFAM: Pirin, N-terminal; KEGG: spe:Spro_4334 pirin domain-containing protein YP_004507795.1 TIGRFAM: Uncharacterised protein family UPF0011; HAMAP: Ribosomal RNA small subunit methyltransferase I; KEGG: spe:Spro_4335 uroporphyrin-III C/tetrapyrrole methyltransferase; PFAM: Tetrapyrrole methylase YP_004507796.1 PFAM: LppC lipoprotein; KEGG: spe:Spro_4336 LppC family lipoprotein YP_004507797.1 TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: spe:Spro_4337 hypothetical protein; PFAM: Uncharacterised protein family UPF0102 YP_004507798.1 KEGG: spe:Spro_4338 DnaA initiator-associating protein DiaA; HAMAP: DnaA initiator-associating protein diaA; PFAM: Sugar isomerase (SIS) YP_004507799.1 KEGG: spe:Spro_4339 hypothetical protein; PFAM: Transport-associated; SMART: Transport-associated and nodulation region, bacteria YP_004507800.1 TIGRFAM: Monofunctional biosynthetic peptidoglycan transglycosylase; HAMAP: Monofunctional biosynthetic peptidoglycan transglycosylase; KEGG: spe:Spro_4340 monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: Glycosyl transferase, family 51 YP_004507801.1 PFAM: ThiJ/PfpI; KEGG: spe:Spro_4341 isoprenoid biosynthesis protein with amidotransferase-like domain YP_004507802.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; KEGG: spe:Spro_4342 aerobic respiration control sensor protein ArcB; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region YP_004507803.1 TIGRFAM: Conserved hypothetical protein CHP01212; PFAM: Radical SAM; KEGG: spe:Spro_4343 radical SAM protein; SMART: Elongator protein 3/MiaB/NifB YP_004507804.1 KEGG: spe:Spro_4344 glutamate synthase subunit alpha; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal YP_004507805.1 TIGRFAM: Glutamate synthase, NADH/NADPH, small subunit 2; KEGG: spe:Spro_4345 glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004507806.1 PFAM: Stringent starvation protein B; KEGG: spe:Spro_4346 ClpXP protease specificity-enhancing factor YP_004507807.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: spe:Spro_4347 stringent starvation protein A YP_004507808.1 PFAM: Ribosomal protein S9; KEGG: pwa:Pecwa_0300 30S ribosomal protein S9 YP_004507809.1 KEGG: spe:Spro_4349 50S ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13 YP_004507810.1 PFAM: ATPase, AFG1-like; KEGG: spe:Spro_4350 AFG1 family ATPase YP_004507811.1 PFAM: Protein of unknown function DUF1043; KEGG: spe:Spro_4351 cytochrome d ubiquinol oxidase subunit III YP_004507812.1 TIGRFAM: Peptidase S1C, Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; KEGG: spe:Spro_4352 protease Do; SMART: PDZ/DHR/GLGF YP_004507813.1 TIGRFAM: Peptidase S1C, DegS; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; KEGG: spe:Spro_4353 serine endoprotease; SMART: PDZ/DHR/GLGF YP_004507814.1 PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: spe:Spro_4354 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_004507815.1 PFAM: BolA-like protein; KEGG: spe:Spro_4355 BolA family protein YP_004507816.1 PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: spe:Spro_4356 anti-sigma-factor antagonist YP_004507817.1 PFAM: Toluene tolerance; KEGG: spe:Spro_4357 toluene tolerance family protein YP_004507818.1 PFAM: Mammalian cell entry related; KEGG: spe:Spro_4358 hypothetical protein YP_004507819.1 KEGG: spe:Spro_4359 hypothetical protein; TIGRFAM: Protein of unknown function DUF140; PFAM: Protein of unknown function DUF140 YP_004507820.1 PFAM: ABC transporter-like; KEGG: spe:Spro_4360 ABC transporter ATP-binding protein YrbF; SMART: ATPase, AAA+ type, core YP_004507821.1 KEGG: spe:Spro_4361 calcium/sodium:proton antiporter; TIGRFAM: K+-dependent Na+/Ca+ exchanger-like; PFAM: Sodium/calcium exchanger membrane region YP_004507822.1 TIGRFAM: KpsF/GutQ; KEGG: spe:Spro_4362 D-arabinose 5-phosphate isomerase; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core YP_004507823.1 TIGRFAM: Phosphatase KdsC; HAD-superfamily hydrolase, subfamily IIIA; KEGG: spe:Spro_4363 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; PFAM: HAD superfamily hydrolase-like, type 3 YP_004507824.1 PFAM: Protein of unknown function DUF1239; KEGG: spe:Spro_4364 hypothetical protein YP_004507825.1 KEGG: spe:Spro_4365 lipopolysaccharide transport periplasmic protein LptA; TIGRFAM: Cell envelope biogenesis YhbN; PFAM: OstA-like protein YP_004507826.1 PFAM: ABC transporter-like; KEGG: spe:Spro_4366 ABC transporter ATP-binding protein YhbG; SMART: ATPase, AAA+ type, core YP_004507827.1 KEGG: spe:Spro_4367 RNA polymerase factor sigma-54; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54 YP_004507828.1 KEGG: spe:Spro_4368 sigma(54) modulation protein; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein YP_004507829.1 KEGG: spe:Spro_4369 PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN; TIGRFAM: Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN; PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2 YP_004507830.1 HAMAP: ATPase, P-loop-containing; KEGG: spe:Spro_4370 hypothetical protein YP_004507831.1 KEGG: spe:Spro_4371 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein YP_004507832.1 KEGG: spe:Spro_4372 transcriptional antiterminator, BglG; PFAM: PRD; Helix-turn-helix, type 11; M trans-acting positive regulator; Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2 YP_004507833.1 KEGG: spe:Spro_4373 6-phosphogluconolactonase; PFAM: Domain of unknown function DUF2394 YP_004507834.1 KEGG: spe:Spro_4374 hypothetical protein; TIGRFAM: Protein of unknown function DUF1341; PFAM: Protein of unknown function DUF1341 YP_004507835.1 KEGG: spe:Spro_4375 pyridoxal phosphate-dependent enzyme; TIGRFAM: Pyridoxal phosphate-dependent enzyme, SelA-like; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase YP_004507836.1 KEGG: spe:Spro_4376 dihydroorotase; TIGRFAM: Amidohydrolase EF0837/AHA3915, PFAM: Amidohydrolase 1 YP_004507837.1 TIGRFAM: Conserved hypothetical protein CHP03579, EF0830/AHA391; KEGG: spe:Spro_4377 hypothetical protein YP_004507838.1 TIGRFAM: Conserved hypothetical protein CHP03580, EF0832/AHA3913; KEGG: spe:Spro_4378 hypothetical protein YP_004507839.1 TIGRFAM: Conserved hypothetical protein CHP03578, EF0831/AHA3912; KEGG: spe:Spro_4379 hypothetical protein YP_004507840.1 TIGRFAM: Conserved hypothetical protein CHP03577, EF0830/AHA3911; KEGG: spe:Spro_4380 hypothetical protein YP_004507841.1 KEGG: spe:Spro_4381 PRD domain-containing protein; TIGRFAM: PRD domain protein, EF0829/AHA3910; PFAM: PRD YP_004507842.1 KEGG: spe:Spro_4382 nucleoside diphosphate kinase regulator YP_004507843.1 PFAM: Protein of unknown function DUF81; KEGG: kpu:KP1_2835 hypothetical protein YP_004507844.1 KEGG: aor:AOR_1_238184 hypothetical protein YP_004507845.1 KEGG: bja:blr0577 hypothetical protein YP_004507846.1 KEGG: pfo:Pfl01_4301 AraC family transcriptional regulator; PFAM: AraC protein, arabinose-binding/dimerisation; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004507847.1 PFAM: Cytochrome b562; KEGG: spe:Spro_4383 cytochrome b562 YP_004507848.1 PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: spe:Spro_4384 peptidase PmbA YP_004507849.1 KEGG: spe:Spro_4387 hypothetical protein; HAMAP: UPF0307 protein yjgA; PFAM: Uncharacterised protein family UPF0307 YP_004507850.1 PFAM: Barstar (barnase inhibitor); KEGG: spe:Spro_4388 barnase inhibitor YP_004507851.1 PFAM: Guanine-specific ribonuclease N1/T1; KEGG: spe:Spro_4389 guanine-specific ribonuclease N1 and T1 YP_004507852.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: spe:Spro_4390 p-hydroxybenzoic acid efflux subunit AaeB YP_004507853.1 TIGRFAM: Secretion protein HlyD; HAMAP: p-hydroxybenzoic acid efflux pump subunit AaeA; KEGG: spe:Spro_4391 p-hydroxybenzoic acid efflux subunit AaeA; PFAM: Secretion protein HlyD YP_004507854.1 KEGG: spe:Spro_4392 hypothetical protein; HAMAP: Protein AaeX; PFAM: Protein of unknown function DUF1656 YP_004507855.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_4393 DNA-binding transcriptional regulator YP_004507856.1 KEGG: spe:Spro_4394 hypothetical protein YP_004507857.1 KEGG: spe:Spro_4396 purine nucleosidase; PFAM: Inosine/uridine-preferring nucleoside hydrolase YP_004507858.1 PFAM: Protein of unknown function DUF1813, HSP20-like; KEGG: pva:Pvag_0917 hypothetical protein YP_004507859.1 PFAM: Protein of unknown function DUF1813, HSP20-like; KEGG: yen:YE3452 hypothetical protein YP_004507860.1 manually curated; KEGG: eca:ECA0398 hypothetical protein YP_004507861.1 KEGG: rah:Rahaq_2031 filamentous hemagglutinin family outer membrane protein; TIGRFAM: Filamentous haemagglutinin, N-terminal, bacterial; Adhesin HecA 20-residue repeat x2; PFAM: Filamentous haemagglutinin, N-terminal, bacterial; Filamentous haemagglutinin, bacterial; Protein of unknown function DUF638, haemagglutinin/haemolysin YP_004507862.1 PFAM: Polypeptide-transport-associated, ShlB-type; Haemolysin activator HlyB; KEGG: spe:Spro_4403 polypeptide-transport-associated domain-containing protein YP_004507863.1 PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: spe:Spro_4404 protease TldD YP_004507864.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: spe:Spro_4405 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004507865.1 TIGRFAM: Conserved hypothetical protein CHP02099; KEGG: spe:Spro_4406 hypothetical protein YP_004507866.1 KEGG: spe:Spro_4407 ribonuclease G; TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain YP_004507867.1 TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: spe:Spro_4408 Maf-like protein; PFAM: Maf-like protein YP_004507868.1 KEGG: spe:Spro_4409 rod shape-determining protein MreD; TIGRFAM: Cell shape-determining protein MreD; PFAM: Cell shape-determining protein MreD YP_004507869.1 KEGG: spe:Spro_4410 rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: Rod shape-determining protein MreC YP_004507870.1 KEGG: spe:Spro_4411 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl YP_004507871.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: spe:Spro_4412 regulatory protein CsrD; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted YP_004507872.1 KEGG: spe:Spro_4413 quinone oxidoreductase YhdH/YhfP; TIGRFAM: Quinone oxidoreductase , YhdH/YhfP; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004507873.1 KEGG: spe:Spro_4414 sulfite oxidase subunit YedY; HAMAP: Sulfoxide reductase catalytic subunit yedY; PFAM: Oxidoreductase, molybdopterin binding YP_004507874.1 KEGG: spe:Spro_4415 sulfite oxidase subunit YedZ; HAMAP: Sulfoxide reductase heme-binding subunit yedZ; PFAM: Ferric reductase-like transmembrane component, N-terminal YP_004507875.1 PFAM: Dehydroquinase, class II; TIGRFAM: Dehydroquinase, class II; HAMAP: Dehydroquinase, class II; KEGG: spe:Spro_4416 3-dehydroquinate dehydratase YP_004507876.1 KEGG: spe:Spro_4417 acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; PFAM: Biotin/lipoyl attachment YP_004507877.1 TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; KEGG: spe:Spro_4418 acetyl-CoA carboxylase biotin carboxylase subunit; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal YP_004507878.1 PFAM: Protein of unknown function DUF997; KEGG: spe:Spro_4419 hypothetical protein YP_004507879.1 KEGG: spe:Spro_4420 sodium/panthothenate symporter; TIGRFAM: Sodium/pantothenate symporter; Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter YP_004507880.1 TIGRFAM: Ribosomal protein L11 methyltransferase; HAMAP: Ribosomal protein L11 methyltransferase; KEGG: spe:Spro_4421 50S ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase YP_004507881.1 KEGG: spe:Spro_4422 carbonate dehydratase; PFAM: Carbonic anhydrase, alpha-class, catalytic domain YP_004507882.1 manually curated; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; KEGG: spe:Spro_4423 tRNA-dihydrouridine synthase B; PFAM: tRNA-dihydrouridine synthase YP_004507883.1 KEGG: etr:ETAE_3152 DNA-binding protein fis; HAMAP: DNA-binding protein fis; PFAM: Helix-turn-helix, Fis-type YP_004507884.1 KEGG: spe:Spro_4425 lipid A biosynthesis palmitoleoyl acyltransferase; TIGRFAM: Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase YP_004507885.1 KEGG: spe:Spro_4426 hypothetical protein; PFAM: Glutamine amidotransferase class-I, C-terminal YP_004507886.1 TIGRFAM: Amino acid adenylation; KEGG: ebi:EbC_06320 similar to non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding; Thioesterase YP_004507887.1 PFAM: LrgB-like protein; KEGG: spe:Spro_4427 LrgB family protein YP_004507888.1 PFAM: LrgA; KEGG: spe:Spro_4428 LrgA family protein YP_004507889.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_4429 LysR family transcriptional regulator YP_004507890.1 KEGG: spe:Spro_4430 Na+/H+ antiporter; TIGRFAM: Na+/H+ exchanger, yjcE-like, bacteria; PFAM: Cation/H+ exchanger YP_004507891.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: spe:Spro_4431 xanthine/uracil/vitamin C permease YP_004507892.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: spe:Spro_4432 lactoylglutathione lyase YP_004507893.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: spe:Spro_4433 glutathione S-transferase domain-containing protein YP_004507894.1 PFAM: Protein of unknown function DUF1471; KEGG: spe:Spro_4435 hypothetical protein YP_004507895.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_4436 LysR family transcriptional regulator YP_004507896.1 KEGG: spe:Spro_4437 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004507897.1 KEGG: spe:Spro_4439 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_004507898.1 TIGRFAM: Excinuclease ABC, A subunit; HAMAP: UvrABC system protein A; KEGG: spe:Spro_4440 excinuclease ABC subunit A; PFAM: ABC transporter-like YP_004507899.1 KEGG: spe:Spro_4441 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004507900.1 KEGG: spe:Spro_4442 maltose O-acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat YP_004507901.1 KEGG: spe:Spro_4443 hypothetical protein YP_004507902.1 KEGG: spe:Spro_4444 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0047; PFAM: Uncharacterised protein family UPF0047 YP_004507903.1 KEGG: spe:Spro_4445 aromatic amino acid aminotransferase; PFAM: Aminotransferase, class I/II YP_004507904.1 PFAM: Protein of unknown function DUF161; KEGG: pct:PC1_3503 hypothetical protein YP_004507905.1 KEGG: spe:Spro_4446 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004507906.1 PFAM: Amino acid permease-associated region; KEGG: pao:Pat9b_0308 amino acid permease-associated protein YP_004507907.1 PFAM: Extracellular solute-binding protein, family 3; KEGG: spe:Spro_4447 arogenate dehydratase; SMART: Extracellular solute-binding protein, family 3 YP_004507908.1 PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; TIGRFAM: Alanine racemase; HAMAP: Alanine racemase; KEGG: spe:Spro_4448 alanine racemase YP_004507909.1 SMART: ATPase, AAA+ type, core; manually curated; KEGG: spe:Spro_4449 replicative DNA helicase; TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal YP_004507910.1 KEGG: spe:Spro_4450 NADPH-dependent quinone oxidoreductase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like YP_004507911.1 KEGG: spe:Spro_4452 phage shock protein G; TIGRFAM: Phage shock protein G; PFAM: Phage shock protein G YP_004507912.1 KEGG: spe:Spro_4453 tRNA-dihydrouridine synthase A; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, YjbN; PFAM: tRNA-dihydrouridine synthase YP_004507913.1 SMART: Tetratricopeptide repeat; KEGG: spe:Spro_4454 TPR repeat-containing protein YP_004507914.1 KEGG: spe:Spro_4455 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004507915.1 KEGG: spe:Spro_4456 transmembrane anti-sigma factor YP_004507916.1 PFAM: Ferric-uptake regulator; KEGG: spe:Spro_4457 zinc uptake transcriptional repressor YP_004507917.1 PFAM: CsbD-like; KEGG: spe:Spro_4458 stress-response protein YP_004507918.1 KEGG: spe:Spro_4459 DNA-damage-inducible SOS response protein; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: Multi antimicrobial extrusion protein MatE YP_004507919.1 TIGRFAM: Peptidase S24, LexA repressor; HAMAP: LexA repressor; KEGG: spe:Spro_4460 LexA repressor; PFAM: LexA DNA-binding region; Peptidase S24/S26A/S26B, conserved region YP_004507920.1 PFAM: Diacylglycerol kinase, prokaryotic; KEGG: spe:Spro_4461 diacylglycerol kinase YP_004507921.1 KEGG: spe:Spro_4462 glycerol-3-phosphate acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; TIGRFAM: glycerol-3-phosphate O-acyltransferase; HAMAP: Glycerol-3-phosphate acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004507922.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; HAMAP: 4-hydroxybenzoate octaprenyltransferase; KEGG: spe:Spro_4463 4-hydroxybenzoate octaprenyltransferase; PFAM: UbiA prenyltransferase YP_004507923.1 HAMAP: Chorismate--pyruvate lyase; KEGG: spe:Spro_4464 chorismate pyruvate lyase; PFAM: Chorismate--pyruvate lyase YP_004507924.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: spe:Spro_4467 inosine/uridine-preferring nucleoside hydrolase YP_004507925.1 PFAM: Maltose operon periplasmic; KEGG: spe:Spro_4468 maltose regulon periplasmic protein YP_004507926.1 KEGG: spe:Spro_4469 maltoporin; HAMAP: Maltoporin; PFAM: Porin, LamB type YP_004507927.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: spe:Spro_4470 maltose/maltodextrin transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004507928.1 KEGG: spe:Spro_4471 hypothetical protein YP_004507929.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: spe:Spro_4472 maltose ABC transporter periplasmic protein YP_004507930.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_4473 maltose transporter membrane protein YP_004507931.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_4474 maltose transporter permease YP_004507932.1 KEGG: spe:Spro_4475 phosphate-starvation-inducible protein PsiE; HAMAP: Protein psiE; PFAM: Phosphate-starvation-inducible E YP_004507933.1 KEGG: spe:Spro_4476 hypothetical protein YP_004507934.1 HAMAP: Phosphoglucose isomerase (PGI); KEGG: spe:Spro_4477 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI) YP_004507935.1 PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; KEGG: spe:Spro_4478 sodium/hydrogen exchanger YP_004507936.1 TIGRFAM: Aspartate kinase region; Aspartate kinase, monofunctional class; KEGG: spe:Spro_4479 aspartate kinase III; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT YP_004507937.1 PFAM: Bile acid:sodium symporter; KEGG: spe:Spro_4480 bile acid:sodium symporter YP_004507938.1 PFAM: Haemolysin activator HlyB; Polypeptide-transport-associated, ShlB-type; KEGG: spe:Spro_4481 hemolysin activator HlyB domain-containing protein YP_004507939.1 KEGG: spe:Spro_4482 filamentous hemagglutinin outer membrane protein; TIGRFAM: Filamentous haemagglutinin, N-terminal, bacterial; PFAM: Filamentous haemagglutinin, N-terminal, bacterial; Filamentous haemagglutinin, bacterial YP_004507940.1 KEGG: spe:Spro_4483 sodium-dependent inorganic phosphate (Pi) transporter; TIGRFAM: Na/Pi-cotransporter; Na/Pi co-transporter II-related; PFAM: Na/Pi-cotransporter; PhoU YP_004507941.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: spe:Spro_4484 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004507942.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_4485 binding-protein-dependent transport systems inner membrane component YP_004507943.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_4486 binding-protein-dependent transport systems inner membrane component YP_004507944.1 PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; KEGG: spe:Spro_4487 hypothetical protein YP_004507945.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: spe:Spro_4488 extracellular solute-binding protein YP_004507946.1 manually curated; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: spe:Spro_4489 GntR family transcriptional regulator; SMART: HTH transcriptional regulator, GntR YP_004507947.1 TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; KEGG: spe:Spro_4490 B12-dependent methionine synthase; PFAM: Homocysteine S-methyltransferase; Dihydropteroate synthase, DHPS; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Vitamin B12 dependent methionine synthase, activation region YP_004507948.1 KEGG: spe:Spro_4491 transcriptional repressor IclR; PFAM: Transcriptional regulator IclR, C-terminal; Transcriptional regulator IclR, N-terminal; SMART: Transcriptional regulator IclR, N-terminal YP_004507949.1 TIGRFAM: Carbohydrate kinase, thermoresistant glucokinase; KEGG: spe:Spro_4497 gluconate kinase 1; PFAM: Shikimate kinase YP_004507950.1 KEGG: spe:Spro_4498 gluconate transporter; TIGRFAM: Gluconate transporter; PFAM: Gluconate transporter YP_004507951.1 TIGRFAM: 6-phosphogluconate dehydratase; KEGG: spe:Spro_4499 phosphogluconate dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase YP_004507952.1 TIGRFAM: KDPG/KHG aldolase; KEGG: spe:Spro_4500 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; PFAM: KDPG/KHG aldolase YP_004507953.1 HAMAP: Isocitrate dehydrogenase kinasephosphatase; KEGG: spe:Spro_4501 bifunctional isocitrate dehydrogenase kinase/phosphatase; PFAM: Isocitrate dehydrogenase kinasephosphatase YP_004507954.1 TIGRFAM: Isocitrate lyase; KEGG: spe:Spro_4502 isocitrate lyase; PFAM: Isocitrate lyase/phosphorylmutase YP_004507955.1 TIGRFAM: Malate synthase A; KEGG: spe:Spro_4503 malate synthase; PFAM: Malate synthase-like, core YP_004507956.1 PFAM: Homoserine O-succinyltransferase; TIGRFAM: Homoserine O-succinyltransferase; HAMAP: Homoserine O-succinyltransferase; KEGG: spe:Spro_4504 homoserine O-succinyltransferase YP_004507957.1 KEGG: spe:Spro_4505 transferase YP_004507958.1 TIGRFAM: Quinate/shikimate 5-dehydrogenase; HAMAP: Shikimate dehydrogenase; KEGG: spe:Spro_4506 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_004507959.1 manually curated; HAMAP: ribosome maturation factor rimN; KEGG: spe:Spro_4507 ribosome maturation factor; PFAM: Sua5/YciO/YrdC, N-terminal YP_004507960.1 PFAM: DNA topoisomerase, type IA, zn finger; KEGG: spe:Spro_4508 DNA topoisomerase type IA Zn finger domain-containing protein YP_004507961.1 PFAM: Protein of unknown function DUF494; KEGG: spe:Spro_4509 hypothetical protein YP_004507962.1 KEGG: spe:Spro_4510 DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A YP_004507963.1 TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: spe:Spro_4511 peptide deformylase; PFAM: Formylmethionine deformylase YP_004507964.1 PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; TIGRFAM: Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; KEGG: spe:Spro_4512 methionyl-tRNA formyltransferase YP_004507965.1 TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; HAMAP: Ribosomal RNA small subunit methyltransferase B; KEGG: spe:Spro_4513 16S rRNA methyltransferase B; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44 YP_004507966.1 PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: spe:Spro_4514 potassium transporter peripheral membrane component YP_004507967.1 TIGRFAM: Large-conductance mechanosensitive channel; HAMAP: Large-conductance mechanosensitive channel; KEGG: spe:Spro_4515 large-conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel YP_004507968.1 PFAM: Protein of unknown function DUF331; KEGG: spe:Spro_4516 hypothetical protein YP_004507969.1 TIGRFAM: Zn(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: spe:Spro_4517 zinc-responsive transcriptional regulator; SMART: HTH transcriptional regulator, MerR YP_004507970.1 PFAM: DnaJ homologue, subfamily C, member 28, conserved domain; KEGG: ctu:Ctu_38210 hypothetical protein YP_004507971.1 KEGG: spe:Spro_4518 50S ribosomal protein L17; TIGRFAM: Ribosomal protein L17; PFAM: Ribosomal protein L17 YP_004507972.1 SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; KEGG: rah:Rahaq_0367 DNA-directed RNA polymerase, subunit alpha; HAMAP: DNA-directed RNA polymerase, alpha subunit; PFAM: DNA-directed RNA polymerase, insert; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal YP_004507973.1 TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: Ribosomal protein S4; RNA-binding S4; KEGG: spe:Spro_4520 30S ribosomal protein S4; SMART: RNA-binding S4 YP_004507974.1 manually curated; TIGRFAM: Ribosomal protein S11, bacterial-type; KEGG: spe:Spro_4521 30S ribosomal protein S11; PFAM: Ribosomal protein S11 YP_004507975.1 KEGG: spe:Spro_4522 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13 YP_004507976.1 TIGRFAM: Ribosomal protein L36; HAMAP: Ribosomal protein L36; KEGG: rah:Rahaq_0363 ribosomal protein L36; PFAM: Ribosomal protein L36 YP_004507977.1 KEGG: spe:Spro_4524 preprotein translocase subunit SecY; TIGRFAM: SecY protein; PFAM: SecY protein YP_004507978.1 KEGG: spe:Spro_4525 50S ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type; PFAM: Ribosomal protein L15 YP_004507979.1 KEGG: yen:YE3905 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30p/L7e, conserved region YP_004507980.1 KEGG: spe:Spro_4527 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal YP_004507981.1 KEGG: spe:Spro_4528 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal protein L18/L5 YP_004507982.1 KEGG: spe:Spro_4529 50S ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6, alpha-beta domain YP_004507983.1 PFAM: Ribosomal protein S8; KEGG: spe:Spro_4530 30S ribosomal protein S8 YP_004507984.1 KEGG: eay:EAM_3185 30S ribosomal protein S14; HAMAP: 30S ribosomal protein S14; PFAM: Ribosomal protein S14 YP_004507985.1 PFAM: Ribosomal protein L5; KEGG: spe:Spro_4532 50S ribosomal protein L5 YP_004507986.1 KEGG: spe:Spro_4533 50S ribosomal protein L24; TIGRFAM: Ribosomal protein L24; SMART: KOW YP_004507987.1 KEGG: spe:Spro_4534 50S ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; PFAM: Ribosomal protein L14b/L23e YP_004507988.1 KEGG: spe:Spro_4535 30S ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17 YP_004507989.1 KEGG: spe:Spro_4536 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29 YP_004507990.1 KEGG: spe:Spro_4537 50S ribosomal protein L16; TIGRFAM: Ribosomal protein L16; PFAM: Ribosomal protein L10e/L16 YP_004507991.1 TIGRFAM: Ribosomal protein S3, bacterial; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; KEGG: spe:Spro_4538 30S ribosomal protein S3; SMART: K Homology YP_004507992.1 KEGG: ypb:YPTS_3885 50S ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; PFAM: Ribosomal protein L22/L17 YP_004507993.1 KEGG: rah:Rahaq_0346 ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19/S15 YP_004507994.1 KEGG: ypb:YPTS_3887 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal protein L2 YP_004507995.1 PFAM: Ribosomal protein L25/L23; KEGG: spe:Spro_4542 50S ribosomal protein L23 YP_004507996.1 PFAM: Ribosomal protein L4/L1e; KEGG: spe:Spro_4543 50S ribosomal protein L4 YP_004507997.1 KEGG: spe:Spro_4544 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3 YP_004507998.1 TIGRFAM: Ribosomal protein S10, bacterial; HAMAP: 30S ribosomal protein S10; KEGG: aat:D11S_0075 30S ribosomal protein S10; PFAM: Ribosomal protein S10 YP_004507999.1 KEGG: spe:Spro_4546 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein YP_004508000.1 PFAM: BFD-like [2Fe-2S]-binding region; KEGG: spe:Spro_4547 BFD/(2Fe-2S)-binding domain-containing protein YP_004508001.1 KEGG: spe:Spro_4548 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal YP_004508002.1 KEGG: spe:Spro_4549 elongation factor G; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal YP_004508003.1 KEGG: spe:Spro_4550 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7 YP_004508004.1 KEGG: spe:Spro_4551 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacterial-type; PFAM: Ribosomal protein S12/S23 YP_004508005.1 TIGRFAM: Sulphur relay, TusB/DsrH; HAMAP: Protein tusB; KEGG: spe:Spro_4552 sulfur transfer complex subunit TusB; PFAM: Sulphur relay, TusB/DsrH YP_004508006.1 TIGRFAM: Sulphur relay, TusC/DsrF; HAMAP: Protein tusC; KEGG: spe:Spro_4553 sulfur relay protein TusC; PFAM: Sulphur relay, DsrE-like protein YP_004508007.1 TIGRFAM: Sulphur relay, TusD/DsrE; HAMAP: Sulfurtransferase tusD; KEGG: spe:Spro_4554 sulfur transfer complex subunit TusD; PFAM: Sulphur relay, DsrE-like protein YP_004508008.1 PFAM: YheO-like; KEGG: spe:Spro_4555 YheO domain-containing protein YP_004508009.1 KEGG: spe:Spro_4556 FKBP-type peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; Peptidyl-prolyl cis-trans isomerase, FKBP-type YP_004508011.1 KEGG: spe:Spro_4557 SlyX family protein; HAMAP: Protein slyX; PFAM: SlyX YP_004508012.1 KEGG: spe:Spro_4558 FKBP-type peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type YP_004508013.1 KEGG: spe:Spro_4559 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02443; PFAM: Conserved hypothetical protein CHP02443 YP_004508014.1 KEGG: spe:Spro_4560 glutathione-regulated potassium-efflux system protein KefB; TIGRFAM: K+/H+ exchanger; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal YP_004508015.1 KEGG: spe:Spro_4561 glutathione-regulated potassium-efflux system ancillary protein KefG; HAMAP: Glutathione-regulated potassium-efflux system ancillary protein kefG; PFAM: Flavodoxin-like fold YP_004508016.1 KEGG: spe:Spro_4562 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004508017.1 KEGG: spe:Spro_4563 taurine dioxygenase; PFAM: Taurine catabolism dioxygenase TauD/TfdA YP_004508018.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_4564 taurine transporter subunit YP_004508019.1 PFAM: ABC transporter-like; KEGG: spe:Spro_4565 taurine transporter ATP-binding subunit; SMART: ATPase, AAA+ type, core YP_004508020.1 TIGRFAM: Taurine ABC transporter, periplasmic binding protein; PFAM: ABC-type glycine betaine transport system, substrate-binding region; KEGG: spe:Spro_4566 taurine transporter substrate binding subunit; SMART: Extracellular solute-binding protein, family 3 YP_004508021.1 KEGG: spe:Spro_4574 PhzF family phenazine biosynthesis protein; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein YP_004508022.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: spe:Spro_4575 lysine exporter protein LysE/YggA YP_004508023.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: spe:Spro_4576 hydrolase YP_004508024.1 KEGG: spe:Spro_4577 hypothetical protein; HAMAP: UPF0270 protein yheU; PFAM: Uncharacterised protein family UPF0270 YP_004508025.1 KEGG: spe:Spro_4578 phosphoribulokinase; PFAM: Phosphoribulokinase/uridine kinase YP_004508026.1 PFAM: Peroxiredoxin, OsmC-like protein; KEGG: spe:Spro_4579 hypothetical protein YP_004508027.1 KEGG: pct:PC1_3853 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp YP_004508028.1 TIGRFAM: Integral membrane protein, YccS/YhfK; KEGG: spe:Spro_4581 YccS/YhfK family integral membrane protein YP_004508029.1 PFAM: Aminotransferase class-III; TIGRFAM: Succinylornithine transaminase; Acetylornithine/succinylornithine aminotransferase; HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase; KEGG: spe:Spro_4582 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase YP_004508030.1 TIGRFAM: Glutamine amidotransferase of anthranilate synthase; KEGG: spe:Spro_4583 para-aminobenzoate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal YP_004508031.1 PFAM: Protein of unknown function DUF853, nucleotide triphosphate hydrolase, KEGG: spe:Spro_4584 hypothetical protein YP_004508032.1 KEGG: spe:Spro_4585 hypothetical protein YP_004508033.1 manually curated; TIGRFAM: Addiction module toxin, RelE/StbE; KEGG: spe:Spro_4586 addiction module antitoxin; PFAM: Plasmid stabilisation system YP_004508034.1 KEGG: spe:Spro_4587 two-component response-regulatory protein YehT; PFAM: Signal transduction response regulator, receiver region; LytTr DNA-binding region; SMART: Signal transduction response regulator, receiver region YP_004508035.1 KEGG: spe:Spro_4588 signal transduction histidine kinase LytS; PFAM: Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region; GAF; Signal transduction histidine kinase, internal region; ATP-binding region, ATPase-like; SMART: GAF YP_004508036.1 KEGG: spe:Spro_4589 peptidyl-prolyl cis-trans isomerase A; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_004508037.1 PFAM: Phosphotransferase system, lactose/cellobiose-specific IIA subunit; KEGG: spe:Spro_4590 PTS system lactose/cellobiose-specific transporter subunit IIA YP_004508038.1 KEGG: spe:Spro_4591 glycoside hydrolase; PFAM: Glycoside hydrolase, family 4 YP_004508039.1 KEGG: spe:Spro_4592 LacI family transcription regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004508040.1 KEGG: spe:Spro_4593 hypothetical protein; HAMAP: Protein tsgA; PFAM: Major facilitator superfamily MFS-1 YP_004508041.1 KEGG: spe:Spro_4594 cytosine deaminase; PFAM: Amidohydrolase 3 YP_004508042.1 TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirB; KEGG: spe:Spro_4595 nitrite reductase (NAD(P)H), large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; Nitrite/sulphite reductase 4Fe-4S region YP_004508043.1 KEGG: spe:Spro_4596 nitrite reductase small subunit; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirD YP_004508044.1 KEGG: spe:Spro_4597 nitrite transporter NirC; TIGRFAM: Formate/nitrite transporter; PFAM: Formate/nitrite transporter YP_004508045.1 PFAM: Tetrapyrrole methylase; Sirohaem synthase, dimerisation domain; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; Sirohaem synthase, N-terminal; HAMAP: Siroheme synthase; KEGG: spe:Spro_4598 siroheme synthase YP_004508046.1 TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; KEGG: spe:Spro_4599 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib YP_004508047.1 PFAM: Haloacid dehalogenase-like hydrolase; TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 2; HAD-superfamily hydrolase, subfamily IA, variant 1; HAMAP: Phosphoglycolate phosphatase; KEGG: spe:Spro_4600 phosphoglycolate phosphatase YP_004508048.1 TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: spe:Spro_4601 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase YP_004508049.1 KEGG: spe:Spro_4602 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_004508050.1 PFAM: Sporulation/cell division region, bacteria; KEGG: spe:Spro_4603 hypothetical protein YP_004508051.1 PFAM: 3-dehydroquinate synthase AroB; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; HAMAP: 3-dehydroquinate synthase; KEGG: spe:Spro_4604 3-dehydroquinate synthase YP_004508052.1 HAMAP: Shikimate kinase; KEGG: spe:Spro_4605 shikimate kinase I; PFAM: Shikimate kinase YP_004508053.1 KEGG: spe:Spro_4606 outer membrane porin HofQ; TIGRFAM: Type IV pilus secretin PilQ; PFAM: Type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal YP_004508054.1 KEGG: spe:Spro_4607 hypothetical protein YP_004508055.1 KEGG: spe:Spro_4608 hypothetical protein YP_004508056.1 PFAM: Fimbrial assembly; KEGG: spe:Spro_4609 fimbrial assembly family protein YP_004508057.1 KEGG: spe:Spro_4610 hypothetical protein YP_004508058.1 TIGRFAM: Penicillin-binding protein 1A; KEGG: spe:Spro_4611 peptidoglycan synthetase; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase YP_004508059.1 PFAM: NUDIX hydrolase domain; KEGG: spe:Spro_4612 ADP-ribose diphosphatase NudE YP_004508060.1 PFAM: Intracellular growth attenuator IgaA; KEGG: spe:Spro_4613 intracellular growth attenuator IgaA YP_004508061.1 KEGG: spe:Spro_4614 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004508062.1 KEGG: spe:Spro_4615 RNA-binding S4 domain-containing protein; PFAM: RNA-binding S4; SMART: RNA-binding S4 YP_004508063.1 KEGG: spe:Spro_4616 HSP33-like chaperonin; HAMAP: Heat shock protein Hsp33 protein; PFAM: Heat shock protein Hsp33 protein YP_004508064.1 PFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; TIGRFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; HAMAP: Phosphoenolpyruvate carboxykinase [ATP]; KEGG: spe:Spro_4617 phosphoenolpyruvate carboxykinase YP_004508065.1 KEGG: spe:Spro_4618 hypothetical protein YP_004508066.1 PFAM: PilT protein, N-terminal; KEGG: spe:Spro_4619 PilT domain-containing protein YP_004508067.1 KEGG: spe:Spro_4620 osmolarity sensor protein; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004508068.1 KEGG: spe:Spro_4621 osmolarity response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region YP_004508069.1 TIGRFAM: Transcription elongation factor GreB, prokaryotic; HAMAP: Transcription elongation factor greA; KEGG: spe:Spro_4626 transcription elongation factor GreB; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic YP_004508070.1 KEGG: spe:Spro_4627 RNA-binding S1 domain-containing protein; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA binding domain; SMART: Resolvase, RNase H-like fold YP_004508071.1 PFAM: Ferrous iron transporter, FeoA subunit; KEGG: spe:Spro_4628 ferrous iron transport protein A YP_004508072.1 KEGG: spe:Spro_4629 ferrous iron transport protein B; TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein; PFAM: Ferrous iron transport protein B, N-terminal; GTP-binding protein, HSR1-related; Nucleoside recognition; Ferrous iron transport protein B, C-terminal YP_004508073.1 KEGG: spe:Spro_4630 hypothetical protein; HAMAP: Ferrous iron transport protein C; PFAM: FeoC like transcriptional regulator YP_004508074.1 PFAM: Protein of unknown function DUF1471; KEGG: spe:Spro_4631 hypothetical protein YP_004508075.1 PFAM: Alpha/beta hydrolase fold-1; TIGRFAM: BioH; HAMAP: Carboxylesterase bioH; KEGG: spe:Spro_4632 BioH protein YP_004508076.1 PFAM: Phosphoribosyltransferase; KEGG: spe:Spro_4633 gluconate periplasmic binding protein YP_004508077.1 KEGG: spe:Spro_4634 DNA uptake protein; TIGRFAM: Fe/S biogenesis protein, nfuA; PFAM: FeS cluster biogenesis; NIF system FeS cluster assembly, NifU, C-terminal YP_004508078.1 TIGRFAM: Glycoside hydrolase, family 77; KEGG: spe:Spro_4635 4-alpha-glucanotransferase; PFAM: Glycoside hydrolase, family 77 YP_004508079.1 KEGG: spe:Spro_4636 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: Glycogen/starch/alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35 YP_004508081.1 HAMAP: HTH-type transcriptional regulator malT; PFAM: Transcription regulator LuxR, C-terminal; KEGG: spe:Spro_4637 transcriptional regulator MalT; SMART: Transcription regulator LuxR, C-terminal YP_004508082.1 SMART: Rhodanese-like; HAMAP: Thiosulfate sulfurtransferase glpE; KEGG: spe:Spro_4638 thiosulfate sulfurtransferase; PFAM: Rhodanese-like YP_004508083.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ddc:Dd586_3834 major facilitator superfamily protein YP_004508084.1 KEGG: pwa:Pecwa_4126 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00022; PFAM: Conserved hypothetical protein CHP00022 YP_004508085.1 PFAM: Dihydrodipicolinate synthetase; KEGG: ddd:Dda3937_00342 dihydrodipicolinate synthase YP_004508086.1 PFAM: Carbohydrate/purine kinase; HTH transcriptional regulator, DeoR N-terminal; KEGG: rah:Rahaq_3574 ribokinase; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004508087.1 HAMAP: Rhomboid protease glpG; KEGG: spe:Spro_4639 intramembrane serine protease GlpG; PFAM: Peptidase S54, rhomboid YP_004508088.1 KEGG: spe:Spro_4640 DNA-binding transcriptional repressor GlpR; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004508089.1 KEGG: spe:Spro_4642 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase YP_004508090.1 TIGRFAM: Glycogen/starch/alpha-glucan phosphorylase; KEGG: spe:Spro_4643 glycogen/starch/alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35 YP_004508091.1 PFAM: Starch synthase catalytic region; Glycosyl transferase, group 1; TIGRFAM: Glycogen/starch synthases, ADP-glucose type; HAMAP: Glycogen/starch synthases, ADP-glucose type; KEGG: spe:Spro_4644 glycogen synthase YP_004508092.1 PFAM: Nucleotidyl transferase; TIGRFAM: Glucose-1-phosphate adenylyltransferase; HAMAP: Glucose-1-phosphate adenylyltransferase; KEGG: spe:Spro_4645 glucose-1-phosphate adenylyltransferase YP_004508093.1 KEGG: spe:Spro_4646 glycogen debranching enzyme; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region; TIGRFAM: Glycogen debranching enzyme GlgX; HAMAP: Glycogen debranching enzyme; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region YP_004508094.1 KEGG: spe:Spro_4647 glycogen branching enzyme; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region; Alpha-amylase, C-terminal all beta; TIGRFAM: 1,4-alpha-glucan branching enzyme, core region; HAMAP: 1,4-alpha-glucan branching enzyme, core region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region YP_004508095.1 TIGRFAM: Aspartate-semialdehyde dehydrogenase, proteobacteria; KEGG: spe:Spro_4648 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation region; Semialdehyde dehydrogenase, NAD-binding YP_004508096.1 KEGG: spe:Spro_4649 dITP- and XTP- hydrolase; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: Multiple antibiotic resistance (MarC)-related YP_004508097.1 KEGG: spe:Spro_4650 gluconate kinase 1; TIGRFAM: Carbohydrate kinase, thermoresistant glucokinase YP_004508098.1 KEGG: spe:Spro_4651 gluconate transporter; TIGRFAM: Gluconate transporter; PFAM: Gluconate transporter YP_004508099.1 KEGG: spe:Spro_4652 LacI family transcription regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004508100.1 PFAM: Pirin, N-terminal; KEGG: spe:Spro_4653 pirin domain-containing protein YP_004508101.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spe:Spro_4654 GCN5-related N-acetyltransferase YP_004508102.1 PFAM: Peptidase S58, DmpA; KEGG: spe:Spro_4655 peptidase S58 DmpA YP_004508103.1 HAMAP: Inosose dehydratase; KEGG: spe:Spro_4656 xylose isomerase domain-containing protein; PFAM: Xylose isomerase, TIM barrel domain YP_004508104.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: spe:Spro_4657 xylose isomerase domain-containing protein YP_004508105.1 HAMAP: Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase; KEGG: spe:Spro_4658 inositol 2-dehydrogenase; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal YP_004508106.1 KEGG: spe:Spro_4659 thiamine pyrophosphate protein central region; PFAM: Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004508107.1 KEGG: spe:Spro_4660 ribokinase-like domain-containing protein; PFAM: Protein of unknown function DUF2090; Carbohydrate/purine kinase YP_004508108.1 PFAM: Sugar isomerase (SIS); Helix-turn-helix protein RpiR; KEGG: spe:Spro_4661 RpiR family transcriptional regulator YP_004508109.1 KEGG: pao:Pat9b_0888 hypothetical protein YP_004508110.1 KEGG: yen:YE0485 hypothetical protein YP_004508111.1 KEGG: spe:Spro_4662 myo-inositol catabolism IolB domain-containing protein YP_004508112.1 TIGRFAM: Methylmalonate-semialdehyde dehydrogenase; KEGG: spe:Spro_4663 methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase YP_004508113.1 KEGG: spe:Spro_4664 sugar transporter; TIGRFAM: Sugar/inositol transporter; PFAM: General substrate transporter YP_004508114.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: spe:Spro_4665 xylose isomerase domain-containing protein YP_004508115.1 KEGG: spe:Spro_4666 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00245; PFAM: Conserved hypothetical protein CHP00245 YP_004508116.1 PFAM: ABC transporter-like; KEGG: spe:Spro_4667 ABC transporter ATP-binding protein YbbL; SMART: ATPase, AAA+ type, core YP_004508117.1 KEGG: spe:Spro_4668 hypothetical protein YP_004508118.1 PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: spe:Spro_4669 FKBP-type peptidylprolyl isomerase YP_004508119.1 KEGG: spe:Spro_4670 hypothetical protein YP_004508120.1 PFAM: Fimbrial protein, C-terminal; KEGG: spe:Spro_4671 fimbrial protein YP_004508121.1 PFAM: Fimbrial protein, C-terminal; KEGG: spe:Spro_4672 fimbrial protein YP_004508122.1 PFAM: Fimbrial biogenesis outer membrane usher protein; KEGG: spe:Spro_4673 fimbrial biogenesis outer membrane usher protein YP_004508123.1 PFAM: Pili assembly chaperone, N-terminal, bacterial; Pili assembly chaperone, C-terminal, bacterial; KEGG: spe:Spro_4674 pili assembly chaperone YP_004508124.1 PFAM: Fimbrial protein, C-terminal; KEGG: spe:Spro_4675 fimbrial protein YP_004508125.1 KEGG: spe:Spro_4676 type I pilus assembly protein FimE YP_004508126.1 PFAM: Fimbrial protein, C-terminal; KEGG: spe:Spro_4677 fimbrial protein YP_004508127.1 PFAM: O-antigen ligase-related; KEGG: spe:Spro_4678 O-antigen polymerase YP_004508128.1 KEGG: spe:Spro_4679 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004508129.1 KEGG: spe:Spro_4680 hypothetical protein YP_004508130.1 KEGG: spe:Spro_4681 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type, C-terminal; Helix-turn-helix, type 11; SMART: Transcription regulator, AsnC-type YP_004508131.1 PFAM: Ureohydrolase; KEGG: pen:PSEEN2606 arginase YP_004508134.1 PFAM: Protein of unknown function DUF330; KEGG: eca:ECA1563 lipoprotein YP_004508135.1 PFAM: Mammalian cell entry related; KEGG: pct:PC1_1445 mammalian cell entry related domain protein YP_004508136.1 PFAM: Paraquat-inducible protein A; KEGG: pct:PC1_1446 paraquat-inducible protein A YP_004508137.1 PFAM: Paraquat-inducible protein A; KEGG: pct:PC1_1447 paraquat-inducible protein A YP_004508138.1 KEGG: eca:ECA1567 lipoprotein YP_004508139.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pct:PC1_1443 transcriptional regulator, TetR family YP_004508140.1 KEGG: ect:ECIAI39_1606 lipoprotein YP_004508143.1 KEGG: spe:Spro_4688 hypothetical protein; TIGRFAM: HI0933-like protein; PFAM: HI0933-like protein YP_004508144.1 PFAM: Phosphate transporter; KEGG: spe:Spro_4689 phosphate transporter YP_004508145.1 KEGG: spe:Spro_4690 universal stress protein UspB; HAMAP: Universal stress protein B; PFAM: Universal stress protein B YP_004508146.1 PFAM: UspA; KEGG: spe:Spro_4691 UspA domain-containing protein YP_004508147.1 KEGG: spe:Spro_4692 glutamate dehydrogenase; PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation region YP_004508148.1 KEGG: spe:Spro_4693 carbohydrate ABC transporter periplasmic-binding protein YP_004508149.1 PFAM: ABC transporter-like; KEGG: spe:Spro_4694 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004508150.1 PFAM: Bacterial inner-membrane translocator; KEGG: spe:Spro_4695 monosaccharide-transporting ATPase YP_004508151.1 PFAM: Bacterial inner-membrane translocator; KEGG: spe:Spro_4696 monosaccharide-transporting ATPase YP_004508152.1 TIGRFAM: Carbohydrate kinase, FGGY-related; KEGG: spe:Spro_4697 FGGY-family pentulose kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal YP_004508153.1 PFAM: Sugar isomerase (SIS); KEGG: spe:Spro_4698 sugar isomerase (SIS) YP_004508154.1 KEGG: spe:Spro_4700 methyltransferase; HAMAP: Protein of unknown function DUF548; PFAM: Protein of unknown function DUF548 YP_004508155.1 KEGG: spe:Spro_4701 oligopeptidase A; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F YP_004508156.1 PFAM: Histidine triad (HIT) protein; KEGG: spe:Spro_4709 histidine triad (HIT) protein YP_004508157.1 PFAM: ASCH domain; KEGG: spe:Spro_4712 hypothetical protein YP_004508158.1 PFAM: Protein of unknown function DUF519; KEGG: spe:Spro_4713 hypothetical protein YP_004508159.1 TIGRFAM: Glutathione reductase, animal/bacterial; KEGG: spe:Spro_4714 glutathione reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004508160.1 PFAM: Polypeptide-transport-associated, ShlB-type; Bacterial surface antigen (D15); KEGG: pap:PSPA7_5176 polypeptide-transport-associated domain-containing protein YP_004508161.1 KEGG: pag:PLES_49241 large exoprotein; TIGRFAM: Filamentous haemagglutinin, N-terminal, bacterial; PFAM: Filamentous haemagglutinin, N-terminal, bacterial; GLUG YP_004508163.1 KEGG: eta:ETA_02690 hypothetical protein; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal YP_004508164.1 PFAM: O-antigen ligase-related; KEGG: spe:Spro_4715 O-antigen polymerase YP_004508165.1 KEGG: eta:ETA_02670 hypothetical protein YP_004508166.1 PFAM: Fimbrial protein, C-terminal; KEGG: eta:ETA_02660 MrfH protein YP_004508167.1 PFAM: Fimbrial protein, C-terminal; KEGG: eta:ETA_02650 MrfF protein YP_004508168.1 KEGG: eta:ETA_02640 MrfE protein YP_004508169.1 PFAM: Fimbrial protein, C-terminal; KEGG: spe:Spro_4721 fimbrial protein YP_004508170.1 PFAM: Pili assembly chaperone, N-terminal, bacterial; Pili assembly chaperone, C-terminal, bacterial; KEGG: eta:ETA_02620 MrfD protein YP_004508171.1 PFAM: Fimbrial biogenesis outer membrane usher protein; KEGG: eta:ETA_02610 MrfC protein YP_004508172.1 PFAM: Fimbrial protein, C-terminal; KEGG: spe:Spro_4724 fimbrial protein YP_004508173.1 PFAM: Fimbrial protein, C-terminal; KEGG: spe:Spro_4725 fimbrial protein YP_004508174.1 PFAM: Signal transduction response regulator, C-terminal; KEGG: spe:Spro_4726 transcriptional regulator CadC YP_004508175.1 KEGG: spe:Spro_4727 hypothetical protein YP_004508176.1 PFAM: Signal transduction response regulator, C-terminal; KEGG: spe:Spro_4728 transcriptional regulator CadC YP_004508177.1 KEGG: spe:Spro_4729 filamentous hemagglutinin outer membrane protein; TIGRFAM: Filamentous haemagglutinin, N-terminal, bacterial; Adhesin HecA 20-residue repeat x2; PFAM: Filamentous haemagglutinin, N-terminal, bacterial; Filamentous haemagglutinin, bacterial YP_004508178.1 PFAM: Haemolysin activator HlyB; Polypeptide-transport-associated, ShlB-type; KEGG: spe:Spro_4730 hemolysin activator HlyB domain-containing protein YP_004508179.1 PFAM: DinB; KEGG: spe:Spro_4731 DinB family protein YP_004508180.1 KEGG: spe:Spro_4732 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004508181.1 KEGG: spe:Spro_4733 hypothetical protein YP_004508182.1 PFAM: Oxidoreductase, molybdopterin binding; KEGG: spe:Spro_4734 oxidoreductase molybdopterin binding YP_004508183.1 KEGG: spe:Spro_4735 integral membrane sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region YP_004508184.1 PFAM: BetR; KEGG: spe:Spro_4736 response regulator receiver protein YP_004508185.1 KEGG: spe:Spro_4737 outer membrane autotransporter; TIGRFAM: Outer membrane autotransporter barrel; Autotransporter-associated beta strand repeat; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Autotransporter beta-domain YP_004508186.1 KEGG: spe:Spro_4738 outer membrane autotransporter; TIGRFAM: Outer membrane autotransporter barrel; Autotransporter-associated beta strand repeat; PFAM: Autotransporter beta-domain; Peptidase S8/S53, subtilisin/kexin/sedolisin YP_004508187.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: spe:Spro_4739 TetR family transcriptional regulator YP_004508188.1 KEGG: spe:Spro_4740 hypothetical protein; HAMAP: UPF0261 protein; PFAM: Uncharacterised conserved protein UCP033271 YP_004508189.1 PFAM: TIM-barrel signal transduction protein, predicted; KEGG: pwa:Pecwa_3413 TIM-barrel signal transduction protein YP_004508190.1 PFAM: Domain of unknown function, Spy-related; KEGG: spe:Spro_4741 periplasmic protein YP_004508191.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold-4; KEGG: spe:Spro_4742 RNase II stability modulator; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS YP_004508192.1 PFAM: Crotonase, core; KEGG: spe:Spro_4743 enoyl-CoA hydratase YP_004508193.1 KEGG: spe:Spro_4744 ribonuclease; TIGRFAM: Conserved hypothetical protein CHP00766, YhjD; PFAM: Ribonuclease BN-related YP_004508194.1 KEGG: spe:Spro_4745 major facilitator superfamily metabolite/H(+) symporter; TIGRFAM: Citrate-proton symport; PFAM: General substrate transporter YP_004508195.1 HAMAP: CDP-diacylglycerol pyrophosphatase; KEGG: spe:Spro_4746 CDP-diacylglycerol pyrophosphatase; PFAM: CDP-diacylglycerol pyrophosphatase, bacterial YP_004508196.1 PFAM: AsmA; KEGG: spe:Spro_4747 AsmA family protein YP_004508197.1 KEGG: spe:Spro_4748 EAL domain-containing protein; PFAM: Diguanylate phosphodiesterase, predicted; SMART: Diguanylate phosphodiesterase, predicted YP_004508198.1 KEGG: spe:Spro_4749 4-oxalocrotonate tautomerase; TIGRFAM: 4-oxalocrotonate tautomerase, subgroup; PFAM: 4-oxalocrotonate tautomerase YP_004508199.1 KEGG: spe:Spro_4750 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase YP_004508200.1 PFAM: Acetohydroxy acid isomeroreductase C-terminal; Acetohydroxy acid isomeroreductase, catalytic; TIGRFAM: Acetohydroxy acid isomeroreductase; HAMAP: Ketol-acid reductoisomerase; KEGG: spe:Spro_4751 ketol-acid reductoisomerase YP_004508201.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_4752 DNA-binding transcriptional regulator IlvY YP_004508202.1 PFAM: Conserved hypothetical protein CHP02453; KEGG: spe:Spro_4753 hypothetical protein YP_004508203.1 KEGG: spe:Spro_4756 threonine dehydratase; TIGRFAM: Threonine dehydratase I; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal YP_004508204.1 PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; TIGRFAM: Dihydroxy-acid dehydratase; HAMAP: Dihydroxy-acid dehydratase; KEGG: spe:Spro_4757 dihydroxy-acid dehydratase YP_004508205.1 TIGRFAM: Branched-chain amino acid aminotransferase I; KEGG: spe:Spro_4758 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV YP_004508206.1 KEGG: spe:Spro_4759 acetolactate synthase 2 regulatory subunit YP_004508207.1 TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; KEGG: spe:Spro_4760 acetolactate synthase 2 catalytic subunit; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004508208.1 KEGG: sgl:SG2398 IlvG operon leader peptide; manually curated; PFAM: IlvGEDA operon leader peptide YP_004508209.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_4761 major facilitator transporter YP_004508210.1 TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; KEGG: spe:Spro_4762 Mg chelatase subunit ChlI; SMART: ATPase, AAA+ type, core YP_004508211.1 PFAM: Protein of unknown function DUF413; KEGG: spe:Spro_4763 hypothetical protein YP_004508212.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: spe:Spro_4764 transcriptional regulator HdfR YP_004508213.1 PFAM: Bacterial inner-membrane translocator; KEGG: spe:Spro_4765 inner membrane ABC transporter permease YjfF YP_004508214.1 PFAM: Bacterial inner-membrane translocator; KEGG: spe:Spro_4766 monosaccharide-transporting ATPase YP_004508215.1 PFAM: ABC transporter-like; KEGG: spe:Spro_4767 ABC transporter-like protein; SMART: ATPase, AAA+ type, core YP_004508216.1 PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: spe:Spro_4768 periplasmic binding protein/LacI transcriptional regulator YP_004508217.1 PFAM: Asp/Glu/hydantoin racemase; TIGRFAM: Glutamate racemase; HAMAP: Glutamate racemase; KEGG: spe:Spro_4769 glutamate racemase YP_004508218.1 TIGRFAM: TonB-dependent vitamin B12 receptor; HAMAP: Vitamin B12 transporter btuB; KEGG: spe:Spro_4770 vitamin B12/cobalamin outer membrane transporter; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004508219.1 TIGRFAM: tRNA (uracil-5-)-methyltransferase; HAMAP: tRNA (uracil-5-)-methyltransferase; KEGG: spe:Spro_4771 tRNA (uracil-5-)-methyltransferase; PFAM: (Uracil-5)-methyltransferase YP_004508220.1 PFAM: Protein of unknown function DUF1422; KEGG: spe:Spro_4772 hypothetical protein YP_004508221.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: spe:Spro_4773 DNA-binding transcriptional repressor FabR YP_004508222.1 HAMAP: Soluble pyridine nucleotide transhydrogenase; KEGG: spe:Spro_4774 soluble pyridine nucleotide transhydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004508223.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_4775 DNA-binding transcriptional regulator OxyR YP_004508224.1 KEGG: spe:Spro_4776 glutaredoxin family protein; TIGRFAM: Glutaredoxin-like region; PFAM: Redoxin; Glutaredoxin YP_004508225.1 KEGG: spe:Spro_4777 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004508226.1 PFAM: Fumarate lyase; TIGRFAM: Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; KEGG: spe:Spro_4778 argininosuccinate lyase YP_004508227.1 PFAM: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; KEGG: spe:Spro_4779 argininosuccinate synthase YP_004508228.1 TIGRFAM: Acetylglutamate kinase; KEGG: spe:Spro_4780 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase YP_004508229.1 PFAM: Semialdehyde dehydrogenase, NAD-binding; Semialdehyde dehydrogenase, dimerisation region; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: spe:Spro_4781 N-acetyl-gamma-glutamyl-phosphate reductase YP_004508230.1 PFAM: Peptidase M20; Peptidase M20, dimerisation; TIGRFAM: Acetylornithine deacetylase (ArgE); HAMAP: Acetylornithine deacetylase; KEGG: spe:Spro_4782 acetylornithine deacetylase YP_004508231.1 HAMAP: Phosphoenolpyruvate carboxylase; KEGG: spe:Spro_4783 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase YP_004508232.1 KEGG: rah:Rahaq_3618 AraC family transcriptional regulator; PFAM: AraC protein, arabinose-binding/dimerisation; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain YP_004508233.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rah:Rahaq_3619 lysine exporter protein (LysE/YggA) YP_004508234.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: spe:Spro_4784 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase YP_004508235.1 KEGG: spe:Spro_4785 bifunctional aspartate kinase II/homoserine dehydrogenase II; TIGRFAM: Aspartate kinase region; PFAM: Homoserine dehydrogenase, catalytic; Aspartate/glutamate/uridylate kinase; Aspartate/homoserine dehydrogenase, NAD-binding YP_004508236.1 KEGG: spe:Spro_4786 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004508237.1 KEGG: rah:Rahaq_4305 methionine repressor, MetJ; HAMAP: Met repressor; PFAM: Methionine repressor MetJ YP_004508238.1 TIGRFAM: Ribosomal protein L31; HAMAP: 50S ribosomal protein L31; KEGG: spe:Spro_4788 50S ribosomal protein L31; PFAM: Ribosomal protein L31 YP_004508239.1 TIGRFAM: Primosomal protein n; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; KEGG: spe:Spro_4789 primosome assembly protein PriA; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004508240.1 KEGG: spe:Spro_4790 DNA-binding transcriptional regulator CytR; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004508241.1 KEGG: spe:Spro_4791 cell division protein FtsN; TIGRFAM: Cell division protein FtsN; PFAM: Sporulation/cell division region, bacteria YP_004508242.1 TIGRFAM: ATP-dependent protease HslVU, peptidase subunit; HAMAP: ATP-dependent protease hslV; KEGG: spe:Spro_4792 ATP-dependent protease peptidase subunit; PFAM: Proteasome, subunit alpha/beta YP_004508243.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Heat shock protein HslU; KEGG: spe:Spro_4793 ATP-dependent protease ATP-binding subunit HslU; HAMAP: ATP-dependent hsl protease ATP-binding subunit hslU; PFAM: ATPase associated with various cellular activities, AAA-2 YP_004508244.1 KEGG: spe:Spro_4794 1,4-dihydroxy-2-naphthoate octaprenyltransferase; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase YP_004508245.1 TIGRFAM: Ribonuclease E inhibitor RraA, gammaproteobacteria; Ribonuclease E inhibitor RraA; HAMAP: Ribonuclease E inhibitor RraA; KEGG: spe:Spro_4795 ribonuclease activity regulator protein RraA; PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase YP_004508246.1 KEGG: spe:Spro_4796 hypothetical protein; HAMAP: Cell division protein ZapB; PFAM: Cell division protein ZapB YP_004508247.1 KEGG: spe:Spro_4797 MIP family channel protein; TIGRFAM: Aquaporin; PFAM: Major intrinsic protein YP_004508248.1 PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; TIGRFAM: Glycerol kinase; HAMAP: Glycerol kinase; KEGG: spe:Spro_4798 glycerol kinase YP_004508249.1 TIGRFAM: GlpX; KEGG: spe:Spro_4799 fructose 1,6-bisphosphatase II; PFAM: GlpX YP_004508250.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_4800 multidrug resistance protein D YP_004508251.1 KEGG: spe:Spro_4801 transcriptional regulator YP_004508252.1 KEGG: spe:Spro_4802 ferredoxin-NADP reductase; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region YP_004508253.1 PFAM: Protein of unknown function DUF805; KEGG: spe:Spro_4803 hypothetical protein YP_004508254.1 PFAM: Protein of unknown function DUF1454; KEGG: spe:Spro_4804 hypothetical protein YP_004508255.1 TIGRFAM: Triosephosphate isomerase; KEGG: spe:Spro_4805 triosephosphate isomerase; PFAM: Triosephosphate isomerase YP_004508256.1 KEGG: spe:Spro_4806 sulfate transporter subunit; TIGRFAM: Thiosulphate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004508257.1 PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase; HAMAP: 6-phosphofructokinase; KEGG: spe:Spro_4807 6-phosphofructokinase YP_004508258.1 TIGRFAM: Cation efflux protein; HAMAP: Ferrous-iron efflux pump fieF; KEGG: spe:Spro_4808 ferrous iron efflux protein F; PFAM: Cation efflux protein YP_004508259.1 PFAM: Domain of unknown function, Spy-related; KEGG: spe:Spro_4809 periplasmic repressor of cpx regulon by interaction with CpxA, rescue from transitory stresses YP_004508260.1 KEGG: spe:Spro_4810 DNA-binding transcriptional regulator CpxR; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal YP_004508261.1 KEGG: spe:Spro_4811 two-component sensor protein; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain YP_004508262.1 KEGG: spe:Spro_4812 tRNA/rRNA methyltransferase YibK; TIGRFAM: RNA methyltransferase TrmH, group 2; PFAM: tRNA/rRNA methyltransferase, SpoU YP_004508263.1 PFAM: CHAD; KEGG: pfl:PFL_4290 hypothetical protein YP_004508264.1 KEGG: spe:Spro_4813 hypothetical protein YP_004508265.1 TIGRFAM: Serine O-acetyltransferase; KEGG: spe:Spro_4814 serine acetyltransferase; PFAM: Serine acetyltransferase, N-terminal; Bacterial transferase hexapeptide repeat YP_004508266.1 KEGG: spe:Spro_4815 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; HAMAP: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal YP_004508267.1 TIGRFAM: Bacterial protein export chaperone SecB; HAMAP: Bacterial protein export chaperone SecB; KEGG: spe:Spro_4816 preprotein translocase subunit SecB; PFAM: Bacterial protein export chaperone SecB YP_004508268.1 KEGG: spe:Spro_4817 glutaredoxin 3; TIGRFAM: Glutaredoxin, GrxC; PFAM: Glutaredoxin YP_004508269.1 KEGG: spe:Spro_4818 rhodanese domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004508270.1 PFAM: BPG-independent PGAM, N-terminal; Metalloenzyme; TIGRFAM: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; HAMAP: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: spe:Spro_4819 phosphoglyceromutase YP_004508271.1 KEGG: spe:Spro_4820 hypothetical protein; manually curated; PFAM: Peptidase M23 YP_004508272.1 PFAM: Protein of unknown function DUF610, YibQ; KEGG: spe:Spro_4821 hypothetical protein YP_004508273.1 PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; TIGRFAM: L-threonine 3-dehydrogenase; HAMAP: L-threonine 3-dehydrogenase; KEGG: spe:Spro_4823 L-threonine 3-dehydrogenase YP_004508274.1 TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; KEGG: spe:Spro_4824 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase, class I/II YP_004508275.1 PFAM: NAD-dependent epimerase/dehydratase; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; HAMAP: ADP-L-glycero-D-manno-heptose-6-epimerase; KEGG: spe:Spro_4825 ADP-L-glycero-D-mannoheptose-6-epimerase YP_004508276.1 KEGG: spe:Spro_4826 ADP-heptose:LPS heptosyltransferase II; TIGRFAM: Lipopolysaccharide heptosyltransferase II; PFAM: Glycosyl transferase, family 9 YP_004508277.1 KEGG: spe:Spro_4827 ADP-heptose:LPS heptosyl transferase I; TIGRFAM: Lipopolysaccharide heptosyltransferase I; PFAM: Glycosyl transferase, family 9 YP_004508278.1 PFAM: Glycosyl transferase, group 1; KEGG: eta:ETA_00820 glycosyl transferase, group 1 YP_004508279.1 PFAM: O-antigen ligase-related; KEGG: eta:ETA_00810 lipid A core, surface polymer ligase WaaL YP_004508280.1 PFAM: Glycosyl transferase, family 2; KEGG: epy:EpC_00910 predicted glycosyl transferase, family 2 YP_004508281.1 PFAM: Glycosyl transferase, family 9; KEGG: eay:EAM_0084 glycosyl transferase YP_004508282.1 KEGG: spe:Spro_4831 WalW protein YP_004508283.1 KEGG: spe:Spro_4832 lipopolysaccharide heptosyltransferase III; TIGRFAM: Lipopolysaccharide heptosyltransferase III, PFAM: Glycosyl transferase, family 9 YP_004508284.1 PFAM: Glycosyl transferase, group 1; KEGG: spe:Spro_4833 group 1 glycosyl transferase YP_004508285.1 PFAM: Glycosyl transferase, group 1; KEGG: spe:Spro_4834 group 1 glycosyl transferase YP_004508286.1 PFAM: Glycosyl transferase, family 9; KEGG: spe:Spro_4835 glycosyl transferase YP_004508287.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; Glycosyl transferase, group 1; KEGG: spe:Spro_4836 3-deoxy-D-manno-octulosonic-acid transferase YP_004508288.1 PFAM: Glycosyl transferase, family 2; KEGG: spe:Spro_4837 glycosyl transferase YP_004508289.1 PFAM: Cytidylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; HAMAP: Coenzyme A biosynthesis protein; KEGG: spe:Spro_4838 phosphopantetheine adenylyltransferase YP_004508290.1 PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; DNA glycosylase/AP lyase/isoleucyl tRNA synthetase, zinc finger domain; TIGRFAM: DNA glycosylase/AP lyase; HAMAP: Formamidopyrimidine-DNA glycosylase; KEGG: spe:Spro_4839 formamidopyrimidine-DNA glycosylase YP_004508291.1 TIGRFAM: Ribosomal protein L33; HAMAP: Ribosomal protein L33; KEGG: pwa:Pecwa_4388 50S ribosomal protein L33; PFAM: Ribosomal protein L33 YP_004508292.1 KEGG: spe:Spro_4841 50S ribosomal protein L28; TIGRFAM: Ribosomal protein L28; PFAM: Ribosomal protein L28 YP_004508293.1 TIGRFAM: DNA repair, RadC-like; HAMAP: UPF0758 protein yicR; KEGG: spe:Spro_4842 DNA repair protein RadC; PFAM: DNA repair, RadC-like YP_004508294.1 TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; KEGG: spe:Spro_4843 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein YP_004508295.1 PFAM: DeoxyUTP pyrophosphatase domain; TIGRFAM: DeoxyUTP pyrophosphatase domain, subfamily 1,; HAMAP: Deoxyuridine 5'-triphosphate nucleotidohydrolase; KEGG: spe:Spro_4844 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_004508296.1 KEGG: spe:Spro_4845 nucleoid occlusion protein; HAMAP: HTH-type protein slmA; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal YP_004508297.1 PFAM: Phosphoribosyltransferase; TIGRFAM: Orotate phosphoribosyl transferase; HAMAP: Orotate phosphoribosyltransferase; KEGG: spe:Spro_4846 orotate phosphoribosyltransferase YP_004508298.1 PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; HAMAP: Ribonuclease phosphorolytic, bacterial-type; KEGG: spe:Spro_4847 ribonuclease PH YP_004508299.1 KEGG: spe:Spro_4848 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: YicC-like, N-terminal; Domain of unknown function DUF1732 YP_004508300.1 KEGG: spe:Spro_4860 hypothetical protein YP_004508301.1 KEGG: spe:Spro_4861 nucleoside transporter; TIGRFAM: Concentrative nucleoside transporter, metazoan/bacterial; PFAM: Na dependent nucleoside transporter, C-terminal; Na dependent nucleoside transporter; Nucleoside recognition YP_004508302.1 KEGG: spe:Spro_4862 hypothetical protein YP_004508303.1 PFAM: Uncharacterised protein family UPF0126; KEGG: spe:Spro_4863 hypothetical protein YP_004508304.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: spe:Spro_4864 LysR family transcriptional regulator YP_004508305.1 PFAM: Major facilitator superfamily MFS-1; KEGG: spe:Spro_4865 major facilitator transporter YP_004508306.1 KEGG: spe:Spro_4867 guanylate kinase; PFAM: Guanylate kinase; TIGRFAM: Guanylate kinase, sub-group; HAMAP: Guanylate kinase, sub-group; SMART: Guanylate kinase/L-type calcium channel region YP_004508307.1 KEGG: spe:Spro_4868 DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6 YP_004508308.1 SMART: Metal-dependent phosphohydrolase, HD region; TIGRFAM: RelA/SpoT protein; KEGG: spe:Spro_4869 bifunctional (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD region, subdomain; TGS YP_004508309.1 manually curated; KEGG: spe:Spro_4870 tRNA guanosine-2'-O-methyltransferase; PFAM: tRNA/rRNA methyltransferase, SpoU YP_004508310.1 TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA/RNA helicase, C-terminal; KEGG: spe:Spro_4871 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal YP_004508311.1 KEGG: spe:Spro_4872 sodium/glutamate symporter; TIGRFAM: Sodium/glutamate symporter; PFAM: Sodium/glutamate symporter YP_004508312.1 KEGG: spe:Spro_4873 uracil-xanthine permease; TIGRFAM: Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease YP_004508313.1 PFAM: AsmA; KEGG: spe:Spro_4874 AsmA family protein YP_004508314.1 KEGG: spe:Spro_4876 thioesterase domain-containing protein; TIGRFAM: Thioesterase, PFAM: Thioesterase, ; GCN5-related N-acetyltransferase YP_004508315.1 TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: spe:Spro_4877 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_004508316.1 TIGRFAM: Ribonuclease BN; HAMAP: UPF0761 membrane protein yihY; KEGG: spe:Spro_4878 ribonuclease BN; PFAM: Ribonuclease BN-related YP_004508317.1 KEGG: spe:Spro_4879 phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004508318.1 KEGG: spe:Spro_4880 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal YP_004508319.1 KEGG: spe:Spro_4881 glutamine synthetase; TIGRFAM: Glutamine synthetase type I; PFAM: Glutamine synthetase, catalytic region; Glutamine synthetase, beta-Grasp YP_004508320.1 KEGG: spe:Spro_4882 nitrogen regulation protein NR(II); PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS YP_004508321.1 TIGRFAM: Signal transduction response regulator, nitrogen regulation NR(I); PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; KEGG: spe:Spro_4883 nitrogen regulation protein NR(I); SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core YP_004508322.1 manually curated; KEGG: pct:PC1_4223 hypothetical protein YP_004508323.1 TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; PFAM: HemN, C-terminal; Radical SAM; KEGG: spe:Spro_4884 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_004508324.1 KEGG: spe:Spro_4885 hypothetical protein; HAMAP: UPF0241 protein yihI; PFAM: Protein of unknown function DUF414 YP_004508325.1 TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; KEGG: spe:Spro_4886 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein, HSR1-related YP_004508326.1 TIGRFAM: DNA polymerase 1; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; KEGG: spe:Spro_4887 DNA polymerase I; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; DNA-directed DNA polymerase, family A, palm domain YP_004508327.1 KEGG: spe:Spro_4888 acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004508328.1 PFAM: DSBA oxidoreductase; KEGG: spe:Spro_4889 periplasmic protein disulfide isomerase I YP_004508329.1 PFAM: Aminoglycoside phosphotransferase; KEGG: spe:Spro_4890 serine/threonine protein kinase YP_004508330.1 PFAM: Protein of unknown function DUF1040; KEGG: spe:Spro_4891 hypothetical protein YP_004508331.1 KEGG: spe:Spro_4892 molybdopterin-guanine dinucleotide biosynthesis protein MobA; TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein A; HAMAP: Molybdopterin-guanine dinucleotide biosynthesis protein A YP_004508332.1 KEGG: spe:Spro_4893 molybdopterin-guanine dinucleotide biosynthesis protein B; TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis MobB region; PFAM: Molybdopterin-guanine dinucleotide biosynthesis MobB region YP_004508333.1 KEGG: spe:Spro_4894 GntR domain-containing protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004508334.1 KEGG: spe:Spro_4895 EmrB/QacA family drug resistance transporter; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004508335.1 KEGG: spe:Spro_4896 transcriptional repressor RbsR; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004508336.1 TIGRFAM: Ribokinase, bacterial; KEGG: spe:Spro_4897 ribokinase; PFAM: Carbohydrate/purine kinase YP_004508337.1 PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: spe:Spro_4898 D-ribose transporter subunit RbsB YP_004508338.1 PFAM: Bacterial inner-membrane translocator; KEGG: spe:Spro_4899 ribose ABC transporter permease YP_004508339.1 PFAM: ABC transporter-like; KEGG: spe:Spro_4900 D-ribose transporter ATP binding protein; SMART: ATPase, AAA+ type, core YP_004508340.1 KEGG: spe:Spro_4901 D-ribose pyranase; HAMAP: D-ribose pyranase; PFAM: RbsD/FucU transport YP_004508341.1 TIGRFAM: Potassium uptake protein, kup; HAMAP: Low affinity potassium transport system protein kup; KEGG: spe:Spro_4902 potassium transport protein Kup; PFAM: K+ potassium transporter YP_004508342.1 KEGG: spe:Spro_4903 regulatory ATPase RavA; PFAM: ATPase associated with various cellular activities, AAA-5; SMART: ATPase, AAA+ type, core YP_004508343.1 KEGG: spe:Spro_4904 hypothetical protein; HAMAP: Protein viaA; SMART: von Willebrand factor, type A YP_004508344.1 PFAM: Aspartate--ammonia ligase; TIGRFAM: Aspartate--ammonia ligase; HAMAP: Aspartate--ammonia ligase; KEGG: spe:Spro_4905 asparagine synthetase AsnA YP_004508345.1 KEGG: spe:Spro_4906 DNA-binding transcriptional regulator AsnC; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type YP_004508346.1 PFAM: Flavodoxin/nitric oxide synthase; KEGG: spe:Spro_4907 flavodoxin YP_004508347.1 TIGRFAM: Glucose-inhibited division protein A; HAMAP: Glucose-inhibited division protein A; KEGG: spe:Spro_4908 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: Glucose-inhibited division protein A-related YP_004508348.1 TIGRFAM: rRNA small subunit methyltransferase G; HAMAP: rRNA small subunit methyltransferase G; KEGG: spe:Spro_4909 16S rRNA methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G YP_004508349.1 PFAM: ATPase, F0 complex, subunit I, proteobacteria-type; KEGG: spe:Spro_0001 F0F1 ATP synthase subunit I YP_004508350.1 TIGRFAM: ATPase, F0 complex, subunit A; HAMAP: ATP synthase subunit a; KEGG: rah:Rahaq_4410 ATP synthase F0 A subunit; PFAM: ATPase, F0 complex, subunit A YP_004508351.1 TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; HAMAP: ATPase, F0 complex, subunit C; KEGG: rah:Rahaq_4411 ATP synthase F0 C subunit; PFAM: ATPase, F0/V0 complex, subunit C YP_004508352.1 TIGRFAM: ATPase, F0 complex, subunit B, bacterial; HAMAP: ATP synthase subunit b; KEGG: spe:Spro_0004 F0F1 ATP synthase subunit B; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast YP_004508353.1 TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; HAMAP: ATPase, F1 complex, OSCP/delta subunit; KEGG: spe:Spro_0005 F0F1 ATP synthase subunit delta; PFAM: ATPase, F1 complex, OSCP/delta subunit YP_004508354.1 TIGRFAM: ATPase, F1 complex, alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; KEGG: spe:Spro_0006 F0F1 ATP synthase subunit alpha; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YP_004508355.1 TIGRFAM: ATPase, F1 complex, gamma subunit; HAMAP: ATP synthase gamma chain; KEGG: spe:Spro_0007 F0F1 ATP synthase subunit gamma; PFAM: ATPase, F1 complex, gamma subunit YP_004508356.1 TIGRFAM: ATPase, F1 complex, beta subunit; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; KEGG: spe:Spro_0008 F0F1 ATP synthase subunit beta; SMART: ATPase, AAA+ type, core YP_004508357.1 KEGG: spe:Spro_0009 F0F1 ATP synthase subunit epsilon; TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; ATPase, F1 complex, delta/epsilon subunit, C-terminal YP_004508358.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Bacterial transferase hexapeptide repeat; TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; HAMAP: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; KEGG: spe:Spro_0010 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_004508359.1 PFAM: Glutamine amidotransferase, class-II; Sugar isomerase (SIS); TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; KEGG: spe:Spro_0011 glucosamine--fructose-6-phosphate aminotransferase YP_004508361.1 KEGG: spe:Spro_0012 phosphate ABC transporter periplasmic substrate-binding protein PstS; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004508362.1 KEGG: spe:Spro_0013 phosphate transporter permease subunit PstC; TIGRFAM: Phosphate ABC transporter, permease PstC; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004508363.1 KEGG: spe:Spro_0014 phosphate transporter permease subunit PtsA; TIGRFAM: Phosphate transport system permease 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004508364.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphate transport system permease 1; KEGG: spe:Spro_0015 phosphate transporter ATP-binding protein; PFAM: ABC transporter-like YP_004508365.1 KEGG: spe:Spro_0016 transcriptional regulator PhoU; TIGRFAM: PhoU; PFAM: PhoU YP_004508366.1 KEGG: spe:Spro_0017 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004508367.1 KEGG: spe:Spro_0018 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004508368.1 KEGG: spe:Spro_0019 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004508369.1 KEGG: spe:Spro_0020 6-phosphogluconate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004508370.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: spe:Spro_0021 xanthine/uracil/vitamin C permease YP_004508371.1 KEGG: spe:Spro_0022 hypothetical protein YP_004508372.1 PFAM: NADPH-dependent FMN reductase; KEGG: spe:Spro_0023 NADPH-dependent FMN reductase YP_004508373.1 KEGG: spe:Spro_0024 hypothetical protein YP_004508374.1 TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; HAMAP: tRNA modification GTPase TrmE; KEGG: spe:Spro_0027 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related YP_004508375.1 TIGRFAM: Membrane insertion protein, OxoA/YidC, N-terminal; Membrane insertion protein, OxaA/YidC, core; HAMAP: Membrane protein oxaA; KEGG: spe:Spro_0028 inner membrane protein translocase component YidC; PFAM: Membrane insertion protein, OxaA/YidC YP_004508376.1 TIGRFAM: Protein of unknown function DUF37; HAMAP: Protein of unknown function DUF37; KEGG: spe:Spro_0029 hypothetical protein; PFAM: Protein of unknown function DUF37 YP_004508377.1 PFAM: Ribonuclease P; manually curated; TIGRFAM: Ribonuclease P; KEGG: spe:Spro_0030 ribonuclease P; HAMAP: Ribonuclease P YP_004508378.1 TIGRFAM: Ribosomal protein L34; HAMAP: 50S ribosomal protein L34; KEGG: xne:XNC1_4646 50S ribosomal subunit protein L34; PFAM: Ribosomal protein L34