-- dump date 20120504_161444 -- class Genbank::CDS -- table cds_note -- id note YP_863656.1 KEGG: rfr:Rfer_4209 hypothetical protein YP_863657.1 KEGG: sbo:SBO_P096 putative transposase YP_863658.1 PFAM: transposase, IS4 family protein; KEGG: ecj:JW1972 IS5 transposase and trans-activator YP_863659.1 KEGG: sde:Sde_1936 hypothetical protein YP_863660.1 KEGG: ilo:IL1217 likely secreted protein containing plastocyanin domain YP_863661.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: ilo:IL1218 cation transport ATPase YP_863662.1 PFAM: regulatory protein GntR, HTH; KEGG: pca:Pcar_2500 transcriptional regulator-like YP_863663.1 PFAM: outer membrane porin; KEGG: wsu:WS0983 hypothetical protein YP_863664.1 KEGG: son:SO4593 hypothetical protein YP_863665.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: stm:STM2599 Gifsy-1 prophage YP_863667.1 KEGG: noc:Noc_2766 hypothetical protein YP_863668.1 KEGG: ilo:IL1241 lipoprotein signal peptidase YP_863669.1 PFAM: nitrogen regulatory protein P-II; KEGG: dar:Daro_2625 nitrogen regulatory protein P-II YP_863670.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: ccr:CC2390 AcrB/AcrD/AcrF family protein YP_863671.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rpa:RPA2055 possible RND divalent metal cation efflux membrane fusion protein CzcB precursor YP_863672.1 PFAM: outer membrane efflux protein; KEGG: cps:CPS_1957 putative RND efflux system protein YP_863673.1 KEGG: ilo:IL1242 Co/Zn/Cd efflux system component YP_863674.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: sde:Sde_1961 putative transcriptional regulator, MerR family YP_863675.1 KEGG: vpa:VP1788 putative transposase YP_863676.1 KEGG: vvu:VV20180 S-adenosylhomocysteine hydrolase YP_863677.1 KEGG: pha:PSHAb0102 hypothetical protein YP_863678.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: yps:YPTB0537 putative type I restriction-modification system, methyltransferase subunit (N-6 DNA methylase) YP_863679.1 PFAM: restriction modification system DNA specificity domain; KEGG: lsl:LSL_0915 type I restriction-modification system specificity subunit YP_863680.1 KEGG: yps:YPTB0535 putative type I restriction enzyme, R subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD/DEAH box helicase domain protein YP_863682.1 KEGG: ppr:PBPRC0031 hypothetical protein YP_863683.1 binds to DNA replication terminator sequences to prevent passage of replication forks YP_863685.1 KEGG: vvy:VVP58 hypothetical protein YP_863686.1 KEGG: cac:CAC2440 predicted membrane protein YP_863687.1 KEGG: eba:ebD63 hypothetical protein YP_863688.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: son:SOA0012 umuC protein YP_863689.1 PFAM: peptidase S24, S26A and S26B; KEGG: cps:CPS_2683 UmuD protein YP_863691.1 KEGG: lma:LmjF34.0690 hypothetical protein, conserved YP_863693.1 KEGG: sde:Sde_3270 CBS YP_863694.1 KEGG: cps:CPS_1634 hypothetical protein YP_863696.1 KEGG: bbr:BB2192 phage-related DNA recombination protein YP_863697.1 KEGG: bbr:BB2192 phage-related DNA recombination protein YP_863699.1 PFAM: Lytic transglycosylase, catalytic; KEGG: sty:HCM1.259 hypothetical protein YP_863700.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: stm:STM2599 Gifsy-1 prophage YP_863702.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: mag:amb4172 predicted membrane-bound metal-dependent hydrolase YP_863703.1 KEGG: mag:amb3058 hypothetical protein YP_863707.1 PFAM: ferredoxin; KEGG: msu:MS0969 Fdx protein YP_863710.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: psb:Psyr_1433 C-5 cytosine-specific DNA methylase YP_863713.1 KEGG: eba:p1B83 INTERPRO: probable CcdB protein, possible toxin of addiction system YP_863715.1 KEGG: sty:HCM1.117 hypothetical protein YP_863716.1 KEGG: eba:p1B95 hypothetical protein YP_863717.1 PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: dde:Dde_3433 ATPase YP_863718.1 KEGG: dde:Dde_2921 hypothetical protein YP_863720.1 PFAM: UvrD/REP helicase; KEGG: sty:HCM1.107 putative DNA helicase YP_863722.1 KEGG: sty:HCM1.101 plasmid transfer protein YP_863723.1 PFAM: TraU family protein; KEGG: sty:HCM1.100 plasmid transfer protein YP_863724.1 KEGG: sty:HCM1.99 plasmid transfer protein YP_863725.1 KEGG: sty:HCM1.98 putative pilin maturation protein YP_863727.1 KEGG: ypn:YPN_1806 hypothetical protein YP_863728.1 TIGRFAM: conserved hypothetical protein; KEGG: ypa:YPA_1694 hypothetical protein YP_863729.1 KEGG: sty:HCM1.97 putative periplasmic protein YP_863730.1 KEGG: pha:PSHAb0164 putative disulfide isomerase, thiol-disulfide oxidase, periplasmic YP_863731.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: eba:p1B53 ATP-dependent DNA helicase YP_863733.1 KEGG: hch:HCH_01785 predicted signal transduction protein YP_863734.1 KEGG: sty:HCM1.77 plasmid transfer protein YP_863735.1 KEGG: sty:HCM1.76 putative plasmid transfer protein YP_863737.1 KEGG: ppr:PBPRB1440 hypothetical protein YP_863739.1 PFAM: protein of unknown function DUF1526; KEGG: nmu:NmulC_2780 protein of unknown function DUF1526 YP_863740.1 KEGG: noc:Noc_1587 transposase YP_863741.1 KEGG: stm:PSLT053 plasmid partition protein B YP_863742.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: ypm:pMT113 putative partitioning protein A YP_863743.1 PFAM: initiator RepB protein YP_863745.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: son:SO4028 single-strand binding protein YP_863746.1 KEGG: sde:Sde_1588 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_863750.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: noc:Noc_1501 transposase YP_863751.1 KEGG: sec:SCV08 virulence protein VsdF YP_863752.1 PFAM: transposase IS200-family protein; KEGG: sec:SCV07 transposase YP_863753.1 SMART: helix-turn-helix domain protein; KEGG: ilo:IL0302 transcriptional regulator, Cro/CI/xre family YP_863754.1 KEGG: hpj:jhp1070 hypothetical protein YP_863755.1 PFAM: N-6 DNA methylase; KEGG: neu:NE0385 site-specific DNA-methyltransferase, type I modification YP_863756.1 PFAM: restriction modification system DNA specificity domain; KEGG: mma:MM2739 type I restriction-modification system specificity subunit YP_863757.1 KEGG: xft:PD2085 hypothetical protein YP_863758.1 KEGG: rso:RSc0886 hypothetical protein YP_863759.1 KEGG: mma:MM0431 type I restriction-modification system restriction subnit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD/DEAH box helicase domain protein YP_863760.1 TIGRFAM: mobile mystery protein B; PFAM: filamentation induced by cAMP protein Fic; KEGG: mlo:mll2066 hypothetical protein YP_863761.1 TIGRFAM: mobile mystery protein A; SMART: helix-turn-helix domain protein; KEGG: gsu:GSU1390 DNA-binding protein YP_863762.1 PFAM: TatD-related deoxyribonuclease; KEGG: ecc:c4511 Mg-dependent DNase YP_863763.1 KEGG: ecc:c4512 hypothetical protein YP_863764.1 KEGG: ecc:c4513 hypothetical protein YP_863765.1 PFAM: KAP P-loop domain protein; KEGG: ecc:c4514 hypothetical protein YP_863766.1 KEGG: vch:VC0182 hypothetical protein YP_863767.1 PFAM: phage integrase family protein; KEGG: vvy:VV0132 hypothetical protein YP_863768.1 KEGG: vvy:VV0131 hypothetical protein YP_863769.1 PFAM: phage integrase family protein; KEGG: vch:VC0185 transposase, putative YP_863773.1 PFAM: TraB pilus assembly family protein; KEGG: sty:HCM1.73 putative plasmid transfer protein YP_863774.1 KEGG: sty:HCM1.71 putative periplasmic protein YP_863775.1 KEGG: sty:HCM1.70 putative pilus assembly protein YP_863778.1 KEGG: sty:HCM1.275 hypothetical protein YP_863779.1 KEGG: rfr:Rfer_4266 hypothetical protein YP_863780.1 PFAM: Relaxase; KEGG: sty:HCM1.271 hypothetical protein YP_863782.1 KEGG: sty:HCM1.269 hypothetical protein YP_863783.1 KEGG: dar:Daro_2530 hypothetical protein YP_863785.1 KEGG: eba:p1B150 sex pilus assembly protein YP_863786.1 KEGG: sty:HCM1.263c putative pilus assembly protein YP_863787.1 KEGG: lma:LmjF35.0540 proteophosphoglycan 5 YP_863791.1 PFAM: site-binding protein, DNA replication region YP_863792.1 PFAM: OmpA/MotB domain protein; KEGG: gme:Gmet_3541 OmpA/MotB YP_863793.1 KEGG: rfr:Rfer_4282 hypothetical protein YP_863795.1 KEGG: sty:HCM1.49c putative periplasmic protein YP_863796.1 KEGG: sty:HCM1.56c putative periplasmic protein YP_863797.1 PFAM: transposase, IS4 family protein; KEGG: vvy:VVA0176 transposase YP_863798.1 KEGG: vpa:VPA1316 transposase YP_863799.1 PFAM: Integrase, catalytic region; KEGG: plu:plu3016 transposase, IS30 family YP_863800.1 KEGG: pha:PSHAa0302 hypothetical protein YP_863801.1 PFAM: protein of unknown function DUF411; KEGG: par:Psyc_1592 hypothetical protein YP_863802.1 TIGRFAM: Twin-arginine translocation pathway signal; copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: tcx:Tcr_1573 copper-resistance protein CopA YP_863803.1 PFAM: copper resistance B precursor; KEGG: tbd:Tbd_1325 probable copper resistance protein B YP_863804.1 PFAM: copper resistance protein CopC; KEGG: pha:PSHAb0009 putative copper resistance (CopC-like) YP_863805.1 PFAM: copper resistance D domain protein; KEGG: pha:PSHAb0008 putative copper export protein YP_863806.1 KEGG: pha:PSHAb0007 putative orphan protein YP_863807.1 KEGG: oih:OB3301 hypothetical protein YP_863808.1 PFAM: outer membrane porin; KEGG: wsu:WS0983 hypothetical protein YP_863809.1 KEGG: son:SO2129 transposase, putative YP_863810.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ecs:ECs0608 putative 2-component sensor protein YP_863811.1 response regulator in two-component regulatory system with CusS; regulates the copper efflux system YP_863812.1 with CusA, CusB and CusF is part of a cation efflux system that mediates resistance to copper and silver YP_863813.1 KEGG: ecj:JW0562 periplasmic copper-binding protein YP_863814.1 with CusA, CusC and CusF is part of a cation efflux system that mediates resistance to copper and silver YP_863815.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: ecc:c0661 putative cation efflux system protein CusA YP_863816.1 PFAM: protein of unknown function DUF411; KEGG: mca:MCA0560 hypothetical protein YP_863817.1 KEGG: bja:bll0700 heavy-metal transporting P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein YP_863818.1 PFAM: peptidase M23B; KEGG: stm:STM1890 putative peptidase YP_863819.1 KEGG: spt:SPA2166 possible copper-binding protein YP_863820.1 PFAM: chemotaxis sensory transducer; KEGG: wsu:WS0929 methyl-accepting chemotaxis protein YP_863821.1 PFAM: transposase, IS4 family protein; KEGG: vvy:VVA0176 transposase YP_863822.1 PFAM: transposase Tn3 family protein; KEGG: xcv:XCV2273 Tn5044 transposase YP_863824.1 PFAM: regulatory protein, MerR; KEGG: sty:HCM1.159 putative mercuric resistance operon coregulator YP_863825.1 PFAM: EAL domain protein; KEGG: xac:XAC1938 GGDEF family protein YP_863826.1 TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: tbd:Tbd_1341 mercuric reductase MerA YP_863827.1 PFAM: MerC mercury resistance protein; KEGG: neu:NE0840 putative mercury transport protein YP_863828.1 TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: ilo:IL1645 periplasmic mercuric ion binding protein, MerP YP_863829.1 PFAM: Mercuric transport protein MerT; KEGG: sty:HCM1.234c putative mercuric transport protein YP_863830.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: neu:NE0843 bacterial regulatory proteins, MerR family YP_863831.1 PFAM: phage integrase family protein; KEGG: sde:Sde_1962 AP endonuclease, family 1 YP_863832.1 KEGG: sde:Sde_1963 chromosome segregation ATPases-like YP_863833.1 PFAM: transposase Tn3 family protein; KEGG: neu:NE0835 transposase Tn3 family YP_863834.1 PFAM: Resolvase, N-terminal domain protein; Resolvase helix-turn-helix domain protein; KEGG: neu:NE0836 site-specific recombinase YP_863835.1 TIGRFAM: lipoprotein signal peptidase; PFAM: phosphoesterase, PA-phosphatase related; peptidase A8, signal peptidase II; KEGG: ilo:IL0633 lipoprotein signal peptidase YP_863836.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: pfl:PFL_5893 Cd(II)/Pb(II)-responsive transcriptional regulator YP_863837.1 PFAM: Methionine sulfoxide reductase A; KEGG: cps:CPS_3068 putative peptide methionine sulfoxide reductase MsrA YP_863838.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_863839.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress YP_863840.1 PFAM: protein of unknown function DUF417; KEGG: pha:PSHAb0032 hypothetical protein YP_863841.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: sde:Sde_3431 hypothetical protein YP_863842.1 KEGG: vpa:VPA0869 GGDEF family protein YP_863843.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: xcv:XCV2971 putative sensor protein YP_863844.1 PFAM: Methionine sulfoxide reductase A; KEGG: hma:rrnAC1491 peptide methionine sulfoxide reductase MsrA1 YP_863846.1 KEGG: vch:VC1236 PilB-related protein; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B YP_863847.1 PFAM: glutaredoxin; KEGG: aph:APH_1162 glutaredoxin 3 YP_863848.1 KEGG: bba:Bd1058 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A YP_863849.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: sde:Sde_2769 phosphoribosylaminoimidazole carboxylase, ATPase subunit YP_863852.1 PFAM: Integrase, catalytic region; KEGG: rfr:Rfer_3640 integrase YP_863853.1 KEGG: yps:YPTB3922 hypothetical protein YP_863854.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: sty:HCM1.151c putative mercuric resistance operon regulatory protein YP_863855.1 PFAM: Mercuric transport protein MerT; KEGG: sty:HCM1.152 putative mercuric transport protein YP_863856.1 TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: sty:HCM1.153 putative mercuric transport protein periplasmic binding protein YP_863857.1 PFAM: MerC mercury resistance protein; KEGG: sty:HCM1.157 putative mercury transport protein YP_863858.1 TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: sty:HCM1.158 putative mercuric reductase YP_863859.1 TIGRFAM: mercuric resistence transcriptional repressor protein MerD; PFAM: regulatory protein, MerR; KEGG: sty:HCM1.159 putative mercuric resistance operon coregulator YP_863860.1 PFAM: MerE family protein; KEGG: sty:HCM1.160 hypothetical protein YP_863861.1 KEGG: sty:HCM1.161 hypothetical protein YP_863862.1 KEGG: son:SOA0012 umuC protein YP_863863.1 KEGG: hch:HCH_06278 hypothetical protein YP_863864.1 PFAM: Patatin; KEGG: reu:Reut_C6025 patatin YP_863865.1 KEGG: eba:ebA2450 hypothetical protein YP_863866.1 KEGG: vch:VC0181 hypothetical protein YP_863867.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: eli:ELI_04040 hypothetical protein YP_863869.1 PFAM: helix-turn-helix domain protein YP_863870.1 PFAM: protein of unknown function DUF955; KEGG: xac:XAC1494 hypothetical protein YP_863871.1 PFAM: phage integrase family protein; KEGG: vvy:VVP57 putative site-specific recombinase YP_863875.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: eba:p1B69 hypothetical protein YP_863876.1 PFAM: transposase Tn3 family protein; KEGG: xcv:XCV2273 Tn5044 transposase YP_863877.1 PFAM: manganese and iron superoxide dismutase; KEGG: bja:bll7559 probable Fe/Mn superoxide dismutase YP_863878.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: dar:Daro_3555 chromate transporter YP_863879.1 KEGG: rfr:Rfer_2446 chromate resistance exported protein YP_863880.1 PFAM: phage integrase family protein; KEGG: sde:Sde_1962 AP endonuclease, family 1 YP_863881.1 KEGG: sde:Sde_1963 chromosome segregation ATPases-like YP_863889.1 KEGG: son:SO2383 hypothetical protein YP_863890.1 PFAM: phage integrase family protein; KEGG: ppr:PBPRB0929 hypothetical protein YP_863892.1 KEGG: ppr:PBPRA1708 hypothetical protein YP_863895.1 KEGG: cps:CPS_4861 hypothetical protein YP_863896.1 KEGG: cps:CPS_4862 hypothetical protein YP_863897.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: tcx:Tcr_2095 heavy metal efflux pump CzcA YP_863898.1 KEGG: tcx:Tcr_2096 secretion protein HlyD YP_863899.1 KEGG: tcx:Tcr_2097 outer membrane efflux protein YP_863900.1 PFAM: peptidase M56, BlaR1; KEGG: noc:Noc_0291 hypothetical protein YP_863901.1 PFAM: transcriptional regulator TrmB; Penicillinase repressor; KEGG: noc:Noc_0290 penicillinase repressor YP_863902.1 KEGG: neu:NE1200 hypothetical protein YP_863903.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_A0567 regulatory protein, LysR:LysR, substrate-binding YP_863904.1 PFAM: transmembrane pair domain protein; KEGG: par:Psyc_0621 hypothetical protein YP_867652.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_867653.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_867654.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_867655.1 PFAM: TGF-beta receptor, type I/II extracellular region; KEGG: son:SO0002 proton/peptide symporter family protein YP_867656.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_867657.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: son:SO0004 inner membrane protein, 60 kDa YP_867658.1 PFAM: protein of unknown function DUF37; KEGG: son:SO0005 conserved hypothetical protein TIGR00278 YP_867659.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_867660.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_867661.1 TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; KEGG: son:SO0009 DNA polymerase III, beta subunit YP_867662.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_867663.1 KEGG: son:SO0011 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II YP_867664.1 PFAM: Glutathione S-transferase, N-terminal domain protein; KEGG: son:SO0012 glutathione S-transferase family protein YP_867665.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vvy:VVA1346 transcriptional regulator YP_867666.1 KEGG: son:SO0013 hypothetical protein YP_867667.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_867668.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_867669.1 TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; KEGG: son:SO0016 DNA-3-methyladenine glycosidase I YP_867670.1 PFAM: amidohydrolase; WD40 domain protein beta Propeller; KEGG: son:SO0017 hypothetical amidohydrolase YP_867671.1 PFAM: MOSC domain containing protein; KEGG: son:SO0018 hypothetical protein YP_867672.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs YP_867673.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cvi:CV0239 hypothetical protein YP_867674.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids YP_867675.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids YP_867676.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters YP_867677.1 PFAM: protein of unknown function UPF0029; KEGG: son:SO0023 conserved hypothetical protein TIGR00257 YP_867678.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: son:SO0024 potassium uptake protein TrkH YP_867679.1 KEGG: son:SO0025 protoporphyrinogen oxidase YP_867680.1 PFAM: regulatory protein, ArsR; KEGG: son:SO0026 transcriptional regulator, ArsR family YP_867681.1 KEGG: son:SO0027 protoporphyrinogen oxidase YP_867682.1 KEGG: son:SO0028 potassium uptake protein TrkH; TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter YP_867683.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_867684.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; Methyltransferase type 11; KEGG: son:SO0030 Sun protein YP_867685.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: son:SO0031 methionyl-tRNA formyltransferase YP_867686.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_867687.1 PFAM: Peptidoglycan-binding LysM; KEGG: son:SO0033 LysM domain protein YP_867688.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: son:SO0034 DNA processing protein DprA, putative YP_867689.1 PFAM: protein of unknown function DUF494; KEGG: son:SO0035 Smg protein YP_867690.1 PFAM: DNA topoisomerase, type IA, zn finger domain protein; KEGG: son:SO0036 topoisomerase DNA-binding C4 zinc finger domain protein YP_867691.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain protein; KEGG: son:SO0037 Sua5/YciO/YrdC/YwlC family protein YP_867692.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_867693.1 PFAM: globin; KEGG: son:SO0039 hypothetical globin YP_867694.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_867695.1 PFAM: protein of unknown function DUF1488; KEGG: son:SO0041 hypothetical protein YP_867696.1 KEGG: son:SO0042 carbonic anhydrase, family 3 YP_867697.1 PFAM: protein of unknown function UPF0153; KEGG: son:SO0044 hypothetical protein YP_867698.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: son:SO0045 Rrf2 family protein YP_867699.1 PFAM: protein of unknown function DUF610, YibQ; KEGG: son:SO0046 hypothetical protein YP_867700.1 TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; KEGG: son:SO0047 carboxyl-terminal protease, putative YP_867701.1 PFAM: peptidase M23B; KEGG: son:SO0048 peptidase, M23/M37 family YP_867702.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_867703.1 PFAM: Rhodanese domain protein; KEGG: son:SO0050 rhodanese domain protein YP_867704.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_867705.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_867706.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0054 conserved hypothetical protein TIGR00275 YP_867707.1 KEGG: hch:HCH_04427 hypothetical protein YP_867708.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: son:SO0057 potassium uptake protein, Trk family YP_867709.1 PFAM: TrkA-N domain protein; KEGG: son:SO0058 potassium uptake protein, putative YP_867710.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO0059 transcriptional regulatory protein KdpE YP_867711.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO0060 sensor histidine kinase YP_867712.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: pae:PA1205 conserved hypothetical protein YP_867713.1 PFAM: protein of unknown function DUF81; KEGG: rfr:Rfer_1586 protein of unknown function DUF81 YP_867714.1 PFAM: NLP/P60 protein; KEGG: son:SO0061 lipoprotein, NLP/P60 family YP_867715.1 PFAM: major facilitator superfamily MFS_1; KEGG: vch:VC1597 multidrug transporter, putative YP_867716.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein, LacI; KEGG: hch:HCH_04796 transcriptional regulator YP_867717.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: atc:AGR_pTi_251 sucrose phosphorylase SplA YP_867718.1 PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC1133 transporter, putative YP_867719.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC1136 TonB-dependent receptor YP_867720.1 PFAM: PfkB domain protein; KEGG: cps:CPS_2648 carbohydrate kinase, PfkB family YP_867721.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis YP_867723.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: bur:Bcep18194_B1553 transcriptional regulator, AraC family YP_867724.1 KEGG: son:SO0068 hypothetical protein YP_867725.1 KEGG: son:SO0069 transport protein, putative YP_867726.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0070 ATP-binding transport protein NatA YP_867727.1 PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: son:SO0071 hydrolase, alpha/beta hydrolase fold family YP_867728.1 PFAM: regulatory protein GntR, HTH; KEGG: son:SO0072 transcriptional regulator, GntR family YP_867729.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0073 ABC transporter, ATP-binding protein YP_867730.1 KEGG: son:SO0074 hypothetical protein YP_867731.1 PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0075 AMP-binding family protein YP_867732.1 PFAM: MORN variant repeat protein; KEGG: son:SO0076 hypothetical protein YP_867733.1 PFAM: thioesterase superfamily protein; KEGG: son:SO0077 hypothetical 4-hydroxybenzoyl-CoA thioesterase YP_867734.1 PFAM: HPP family protein; KEGG: tdn:Tmden_1127 HPP YP_867735.1 KEGG: son:SO0079 hypothetical protein YP_867736.1 PFAM: thioesterase superfamily protein; KEGG: son:SO0080 hypothetical 4-hydroxybenzoyl-CoA thioesterase YP_867737.1 PFAM: regulatory protein, MerR; KEGG: pfl:PFL_0764 transcriptional regulator, MerR family YP_867738.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: ppr:PBPRA1975 hypothetical oxidoreductase YP_867739.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: vpa:VP1790 hypothetical protein YP_867740.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0084 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein YP_867741.1 KEGG: son:SO0085 hypothetical protein YP_867742.1 KEGG: son:SO4661 hypothetical protein YP_867743.1 PFAM: Integrase, catalytic region; KEGG: par:Psyc_0937 putative transposase OrfB YP_867744.1 KEGG: dde:Dde_2987 transposase YP_867745.1 KEGG: son:SO0087 hypothetical protein YP_867746.1 PFAM: protein of unknown function DUF885; KEGG: cps:CPS_3202 putative lipoprotein YP_867747.1 PFAM: regulatory protein, MarR; KEGG: hch:HCH_03311 transcriptional regulator YP_867748.1 PFAM: Siderophore-interacting protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: rba:RB11489 vulnibactin utilization protein VIUB YP_867749.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_867750.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: son:SO0096 histidine utilization repressor YP_867751.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_867752.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_867753.1 TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO0102 formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase beta subunit) YP_867754.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO0103 formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit) YP_867755.1 TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: son:SO0104 fdhE protein YP_867756.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_867757.1 TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: son:SO0106 selenocysteine-specific translation elongation factor YP_867758.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth YP_867759.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: son:SO0108 hypothetical transporter component YP_867760.1 PFAM: SirA family protein; KEGG: son:SO0109 hypothetical protein YP_867761.1 PFAM: peptidase M48, Ste24p; KEGG: son:SO0110 hypothetical protease YP_867762.1 KEGG: son:SO0111 hypothetical protein YP_867763.1 KEGG: son:SO0112 hypothetical protein YP_867764.1 KEGG: son:SO0113 hypothetical protein YP_867765.1 KEGG: son:SO0114 hypothetical protein YP_867766.1 PFAM: protein of unknown function DUF1090; KEGG: son:SO0119 hypothetical protein YP_867767.1 PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO0121 hypothetical small-conductance mechanosensitive channel YP_867768.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO0122 transporter, LysE family YP_867769.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0123 acyltransferase family protein YP_867770.1 KEGG: son:SO0125 hypothetical protein YP_867771.1 PFAM: protein of unknown function DUF833; KEGG: son:SO0126 hypothetical protein YP_867772.1 KEGG: son:SO0127 hypothetical protein YP_867773.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO0129 conserved hypothetical protein TIGR00427 YP_867774.1 PFAM: PKD domain containing protein; peptidase M6, immune inhibitor A; KEGG: son:SO0130 protease, putative YP_867775.1 PFAM: Chorismate lyase; KEGG: son:SO0131 putative chorismate--pyruvate lyase YP_867776.1 PFAM: flagellar basal body-associated protein FliL; KEGG: son:SO0132 flagellar protein FliL, putative YP_867777.1 PFAM: protein of unknown function DUF890; KEGG: son:SO0134 hypothetical protein YP_867778.1 PFAM: protein of unknown function DUF333; KEGG: son:SO0135 hemolysin protein, putative YP_867779.1 KEGG: son:SO0136 hypothetical protein YP_867780.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase YP_867781.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: son:SO0138 molybdopterin biosynthesis MoeA protein YP_867782.1 PFAM: Ferritin, Dps family protein; KEGG: son:SO0139 ferritin YP_867783.1 KEGG: son:SO0141 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_867784.1 DHBP synthase; functions during riboflavin biosynthesis YP_867785.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: son:SO0144 protease II YP_867786.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: son:SO0145 hypothetical URI domain endonuclease YP_867788.1 KEGG: son:SO0150 lipoprotein, putative YP_867789.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0151 hypothetical SAM-dependent methyltransferase YP_867790.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: son:SO0152 hypothetical carboxypeptidase YP_867791.1 KEGG: son:SO0154 hypothetical protein YP_867792.1 PFAM: sodium:dicarboxylate symporter; KEGG: son:SO0157 proton/glutamate symporter YP_867793.1 KEGG: son:SO0159 hypothetical protein YP_867794.1 KEGG: ilo:IL0291 hypothetical protein YP_867795.1 PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_01122 outer membrane protein and related peptidoglycan-associated (LipO)protein YP_867796.1 PFAM: AbgT putative transporter; short chain fatty acid transporter; KEGG: son:SO0160 transporter, putative YP_867797.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_867798.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_867799.1 PFAM: RNA-binding S4 domain protein; KEGG: son:SO0164 heat shock protein 15 YP_867800.1 TIGRFAM: general secretion pathway protein C; KEGG: son:SO0165 general secretion pathway protein C YP_867801.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: son:SO0166 general secretion pathway protein D YP_867802.1 KEGG: son:SO0167 general secretion pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_867803.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: son:SO0168 general secretion pathway protein F YP_867805.1 TIGRFAM: general secretion pathway protein H; Prepilin-type cleavage/methylation-like; KEGG: son:SO0170 general secretion pathway protein H YP_867806.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; methylation site containing protein; KEGG: son:SO0171 general secretion pathway protein I YP_867807.1 TIGRFAM: general secretion pathway protein J; PFAM: methylation site containing protein; KEGG: son:SO0172 general secretion pathway protein J YP_867808.1 PFAM: General secretion pathway protein K; KEGG: son:SO0173 general secretion pathway protein K YP_867809.1 TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: son:SO0174 general secretion pathway protein L YP_867810.1 PFAM: General secretion pathway M protein; KEGG: son:SO0175 general secretion pathway protein M YP_867811.1 PFAM: type II secretion system protein N; KEGG: son:SO0176 general secretion pathway protein N YP_867812.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0177 HAD-superfamily hydrolase, subfamily IA, variant 3 protein family YP_867813.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: son:SO0179 hypothetical protein YP_867814.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: son:SO0180 hypothetical protein YP_867815.1 KEGG: son:SO0181 hypothetical protein YP_867816.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_06057 acetyltransferase YP_867817.1 PFAM: phage Tail Collar domain protein; KEGG: pfo:Pfl_0155 phage tail collar YP_867818.1 PFAM: OmpA domain protein transmembrane region-containing protein; Fibronectin, type III domain protein; Ig family protein; SMART: Cadherin; Dystroglycan-type cadherin domain protein; KEGG: son:SO0189 fibronectin type III domain protein YP_867819.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose YP_867820.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: son:SO0191 cysQ protein YP_867821.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0192 acetyltransferase, GNAT family YP_867822.1 PFAM: regulatory protein, TetR; KEGG: son:SO0193 transcriptional regulator, TetR family YP_867823.1 PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: son:SO0194 acyltransferase family protein YP_867825.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_867826.1 catalyzes the formation of selenophosphate from selenide and ATP YP_867827.1 PFAM: fatty acid desaturase; KEGG: son:SO0197 fatty acid desaturase, family 1 YP_867828.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis YP_867829.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs YP_867830.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_867831.1 PFAM: RNP-1 like RNA-binding protein; KEGG: son:SO0208 RNA-binding protein YP_867832.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_867833.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon YP_867834.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_867835.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_867836.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_867837.1 KEGG: son:SO0219 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein YP_867838.1 binds directly to 23S ribosomal RNA YP_867839.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_867840.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_867841.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_867842.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_867843.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_867844.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_867845.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_867846.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_867847.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_867848.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_867849.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_867850.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_867851.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_867852.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_867853.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_867854.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_867855.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_867856.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_867857.1 one of the stabilizing components for the large ribosomal subunit YP_867858.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_867859.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_867860.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_867861.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_867862.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_867863.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_867864.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_867865.1 binds 5S rRNA along with protein L5 and L25 YP_867866.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_867867.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_867868.1 late assembly protein YP_867869.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_867870.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_867871.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_867872.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_867873.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_867874.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_867875.1 is a component of the macrolide binding site in the peptidyl transferase center YP_867876.1 KEGG: vch:VCA0212 hypothetical protein YP_867877.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane YP_867878.1 PFAM: Heme exporter protein D (CcmD); KEGG: son:SO0260 heme exporter protein CcmD YP_867879.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: son:SO0261 heme exporter protein CcmC YP_867880.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: son:SO0262 heme exporter protein CcmB YP_867881.1 ATP-binding protein; required for proper cytochrome c maturation YP_867882.1 PFAM: cytochrome c, class I; KEGG: son:SO0264 cytochrome c YP_867883.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0265 cytochrome c-type biogenesis protein CcmH YP_867884.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: son:SO0266 cytochrome c-type biogenesis protein CcmF YP_867885.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: son:SO0267 thiol:disulfide interchange protein DsbE YP_867886.1 PFAM: cytochrome C biogenesis protein; KEGG: son:SO0268 cytochrome c-type biogenesis protein CcmH YP_867887.1 PFAM: Redoxin domain protein; KEGG: son:SO0269 thioredoxin, putative YP_867888.1 KEGG: son:SO4492 hypothetical protein YP_867889.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: son:SO4488 sensor histidine kinase YP_867890.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4487 DNA-binding response regulator YP_867891.1 PFAM: Propeptide, PepSY amd peptidase M4; KEGG: son:SO4486 hypothetical protein YP_867892.1 KEGG: son:SO4485 diheme cytochrome c YP_867893.1 KEGG: son:SO4484 cytochrome c-type protein Shp YP_867894.1 PFAM: cytochrome B561; KEGG: son:SO4483 cytochrome b, putative YP_867895.1 KEGG: son:SO4482 hypothetical protein YP_867896.1 KEGG: son:SO4481 hypothetical protein YP_867897.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0910 transcriptional regulator, LysR family YP_867898.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hch:HCH_02025 short-chain alcohol dehydrogenase-like protein YP_867899.1 PFAM: aldehyde dehydrogenase; KEGG: son:SO4480 aldehyde dehydrogenase YP_867900.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: son:SO4479 sigma-54 dependent transcriptional regulator YP_867901.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4478 sensor protein CpxA YP_867902.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4477 transcriptional regulatory protein CpxR YP_867903.1 PFAM: protein of unknown function, Spy-related; KEGG: son:SO4476 spheroplast protein y precursor, putative YP_867904.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: son:SO4475 cation efflux family protein YP_867905.1 KEGG: son:SO4474 hypothetical protein YP_867906.1 KEGG: son:SO4473 outer membrane protein, putative YP_867907.1 KEGG: son:SO4472 nitrogen regulation protein NR(I); TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_867908.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: son:SO4471 nitrogen regulation protein YP_867909.1 KEGG: son:SO4470 hypothetical protein YP_867910.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO4469 alcohol dehydrogenase, iron-containing YP_867911.1 PFAM: regulatory protein, TetR; KEGG: son:SO4468 transcriptional regulator, TetR family YP_867912.1 PFAM: protein of unknown function DUF1255; KEGG: son:SO4467 hypothetical protein YP_867913.1 PFAM: chemotaxis sensory transducer; KEGG: son:SO4466 methyl-accepting chemotaxis protein YP_867914.1 PFAM: protein of unknown function DUF323; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4465 hypothetical protein YP_867915.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO4463 prolyl 4-hydroxylase, alpha subunit domain protein YP_867916.1 KEGG: son:SO4462 hypothetical protein YP_867917.1 PFAM: PfkB domain protein; KEGG: son:SO4458 carbohydrate kinase, PfkB family YP_867918.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO4457 GGDEF domain protein YP_867919.1 PFAM: 3-alpha; MOSC domain containing protein; KEGG: son:SO4456 hypothetical protein YP_867920.1 KEGG: son:SO4455 hypothetical protein YP_867921.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4454 methyl-accepting chemotaxis protein YP_867922.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: son:SO4453 electron transfer flavoprotein-ubiquinone oxidoreductase, putative YP_867923.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_867924.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_867925.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: son:SO4450 molybdenum cofactor biosynthesis protein D YP_867926.1 PFAM: molybdopterin biosynthesis MoaE; KEGG: son:SO4449 molybdenum cofactor biosynthesis protein E YP_867927.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: son:SO4448 molybdenum ABC transporter, periplasmic molybdenum-binding protein YP_867928.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4447 molybdenum ABC transporter, permease protein YP_867929.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO4446 molybdenum ABC transporter, ATP-binding protein YP_867930.1 KEGG: son:SO4429 hypothetical protein YP_867931.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4428 DNA-binding response regulator YP_867932.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4427 sensor histidine kinase YP_867933.1 TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: vfi:VF1020 tRNA pseudouridine synthase A YP_867934.1 PFAM: protein of unknown function UPF0057; KEGG: son:SO4423 hypothetical protein YP_867935.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4423.1 hypothetical ferric aerobactin receptor YP_867936.1 KEGG: son:SO4421 hypothetical protein YP_867937.1 PFAM: peptidase M23B; KEGG: son:SO4420 peptidase, M23/M37 family YP_867938.1 KEGG: son:SO4419 hypothetical protein YP_867939.1 PFAM: CHAP domain containing protein; KEGG: son:SO4418 trypanothione synthetase domain protein YP_867940.1 KEGG: hch:HCH_03340 predicted Zn-dependent hydrolase of the beta-lactamase fold YP_867941.1 PFAM: regulatory protein, TetR; KEGG: cps:CPS_1358 transcriptional regulator, TetR family YP_867942.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters YP_867943.1 KEGG: son:SO4414 hypothetical protein YP_867944.1 PFAM: aminotransferase, class V; KEGG: son:SO4413 hypothetical kynureninase YP_867945.1 KEGG: son:SO4412 hypothetical protein YP_867946.1 PFAM: sodium:dicarboxylate symporter; KEGG: oih:OB1282 H(+):sodium-glutamate symporter YP_867948.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eca:ECA0876 TonB-dependent ferric aerobactin receptor YP_867949.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme YP_867950.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: son:SO4408 virulence regulator BipA YP_867951.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: vpa:VPA0381 putative transcription regulator YP_867952.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vpa:VPA0382 putative sorbitol-6-phosphate 2-dehydrogenase YP_867953.1 KEGG: vpa:VPA0383 hypothetical protein YP_867954.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: vpa:VPA0384 hypothetical protein YP_867955.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: son:SO4405 catalase/peroxidase HPI YP_867956.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4404 iron-sulfur cluster-binding protein YP_867957.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, transmembrane region; KEGG: tdn:Tmden_1328 diguanylate cyclase (GGDEF domain) YP_867958.1 KEGG: son:SO4403 hypothetical protein YP_867959.1 KEGG: son:SO4402 hypothetical protein YP_867960.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease YP_867961.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO4400 proline iminopeptidase, putative YP_867962.1 KEGG: son:SO4399 hypothetical protein YP_867963.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_867964.1 TIGRFAM: thioesterase domain, putative; KEGG: son:SO4397 hypothetical acetyltransferase YP_867965.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds YP_867966.1 KEGG: son:SO4395 hypothetical protein YP_867967.1 PFAM: Rhodanese domain protein; KEGG: son:SO4394 phage shock protein E YP_867968.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: lpp:plpp0134 hypothetical protein YP_867969.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: xcv:XCV4391 benzoate permease YP_867970.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO4393 acetyltransferase, GNAT family YP_867971.1 KEGG: vch:VCA0253 antibiotic acetyltransferase YP_867972.1 KEGG: plu:plu0332 hypothetical protein YP_867974.1 KEGG: son:SO4384 hypothetical protein YP_867975.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_867976.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_867977.1 KEGG: son:SO4381 thioester dehydrase family protein YP_867978.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_867979.1 KEGG: son:SO4379 hypothetical protein YP_867980.1 PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: son:SO4378 FAD-binding protein YP_867981.1 KEGG: son:SO4377 hypothetical protein YP_867982.1 KEGG: son:SO4376 hypothetical protein YP_867983.1 KEGG: son:SO4375 hypothetical 4-hydroxybenzoyl-CoA thioesterase YP_867984.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO4374 histidine ammonia-lyase, putative YP_867985.1 PFAM: glycosyl transferase, family 2; lipid A biosynthesis acyltransferase; KEGG: son:SO4373 glycosyl transferase, group 2 family protein YP_867986.1 KEGG: son:SO4372 thioester dehydrase family protein YP_867987.1 KEGG: son:SO4371 hypothetical protein YP_867988.1 KEGG: son:SO4370 hypothetical protein YP_867989.1 KEGG: dde:Dde_2987 transposase YP_867990.1 PFAM: Integrase, catalytic region; KEGG: par:Psyc_0937 putative transposase OrfB YP_867991.1 KEGG: son:SO4370 hypothetical protein YP_867992.1 carries the fatty acid chain in fatty acid biosynthesis YP_867993.1 KEGG: son:SO4368 acyl carrier protein, putative YP_867994.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO4367 acyltransferase family protein YP_867995.1 KEGG: son:SO4366 hypothetical protein YP_867996.1 KEGG: son:SO4365 hypothetical protein YP_867997.1 catalyzes branch migration in Holliday junction intermediates YP_867998.1 KEGG: ppu:PP2372 periplasmic sugar-binding protein, putative YP_867999.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; histidine kinase, HAMP region domain protein; KEGG: ilo:IL2535 intracellular signaling protein (GAF,GGDEF domains) YP_868000.1 PFAM: protein of unknown function UPF0153; KEGG: son:SO4354 hypothetical Fe-S-cluster oxidoreductase YP_868001.1 KEGG: son:SO4353 hypothetical protein YP_868002.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: son:SO4351 CBS domain protein YP_868003.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate YP_868004.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_868005.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_868006.1 KEGG: son:SO4346 acetolactate synthase small subunit YP_868007.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_868008.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_868009.1 PFAM: aminotransferase, class V; KEGG: son:SO4343 aminotransferase, class V YP_868010.1 KEGG: son:SO4342 hypothetical protein YP_868012.1 KEGG: vch:VC0810 hypothetical protein YP_868013.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO4335 phosphatidylglycerophosphatase B, putative YP_868014.1 PFAM: Inner membrane CreD family protein; KEGG: son:SO4334 inner membrane protein, putative YP_868015.1 KEGG: son:SO4333 hypothetical protein YP_868016.1 PFAM: protein of unknown function DUF1006; KEGG: son:SO4332 hypothetical protein YP_868017.1 KEGG: son:SO4331 hypothetical protein YP_868018.1 KEGG: son:SO4330 hypothetical protein YP_868019.1 PFAM: protein of unknown function DUF526; KEGG: son:SO4329 hypothetical protein YP_868020.1 PFAM: acriflavin resistance protein; KEGG: vvy:VV0037 putative multidrug resistance protein YP_868021.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO4327 HlyD family secretion domain protein YP_868022.1 PFAM: regulatory protein, TetR; KEGG: son:SO4326 transcriptional regulator, TetR family YP_868023.1 TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: son:SO4325 ATP-dependent DNA helicase Rep YP_868024.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: son:SO4324 GGDEF domain protein YP_868025.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO4323 GGDEF domain protein YP_868026.1 KEGG: son:SO4322 hypothetical protein YP_868027.1 PFAM: OmpA/MotB domain protein; KEGG: son:SO4321 OmpA family protein YP_868028.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: son:SO4320 agglutination protein YP_868029.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: son:SO4319 HlyD family secretion protein YP_868030.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; peptidase C39, bacteriocin processing; SMART: AAA ATPase; KEGG: son:SO4318 toxin secretion ATP-binding protein YP_868031.1 TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor, type A; KEGG: eca:ECA3266 putative hemagglutinin/hemolysin-related protein YP_868032.1 PFAM: HemY domain protein; KEGG: son:SO4316 HemY protein YP_868033.1 PFAM: protein of unknown function DUF513, hemX; KEGG: son:SO4315 hemX protein YP_868034.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: son:SO4314 uroporphyrinogen-III synthase YP_868035.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_868036.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP YP_868037.1 PFAM: Frataxin family protein; KEGG: son:SO4311 CyaY protein YP_868038.1 KEGG: son:SO4310 hypothetical protein YP_868039.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: son:SO4309 diaminopimelate decarboxylase YP_868040.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_868041.1 PFAM: protein of unknown function DUF484; KEGG: son:SO4307 hypothetical protein YP_868042.1 TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO4306 integrase/recombinase XerC YP_868043.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO4305 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein YP_868044.1 PFAM: HupE/UreJ protein; KEGG: son:SO4304 urease accessory protein UreJ YP_868045.1 PFAM: AAA-4 family protein; KEGG: son:SO4303 hypothetical protein YP_868046.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: son:SO4302 hypothetical protein YP_868047.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription YP_868048.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: son:SO0394 tRNA-dihydrouridine synthase B YP_868049.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_868050.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit YP_868051.1 PFAM: fumarate reductase respiratory complex, transmembrane subunit; KEGG: son:SO0397 fumarate reductase cytochrome B subunit YP_868052.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_868053.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_868054.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: son:SO0400 hypothetical protein YP_868055.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO0401 alcohol dehydrogenase, zinc-containing YP_868056.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0402 transcriptional regulator, LysR family YP_868057.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_868058.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: son:SO0406 thioredoxin 1 YP_868059.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation YP_868060.1 PFAM: Ppx/GppA phosphatase; KEGG: son:SO0408 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase YP_868061.1 KEGG: son:SO0409 hypothetical protein YP_868062.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: son:SO0410 mutator mutT protein YP_868063.1 PFAM: protein of unknown function DUF329; KEGG: son:SO0411 hypothetical protein YP_868064.1 PFAM: protein of unknown function DUF1342; KEGG: son:SO0412 hypothetical protein YP_868065.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_868066.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: son:SO0414 leader peptidase (prepilin peptidase)/N-methyltransferase YP_868067.1 PFAM: type II secretion system protein; KEGG: son:SO0415 type IV pilus biogenesis protein PilC YP_868068.1 TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: son:SO0416 type IV pilus biogenesis protein PilB YP_868069.1 PFAM: O-antigen polymerase; KEGG: sru:SRU_1271 pilin glycosylation enzyme, putative YP_868070.1 PFAM: methylation site containing protein; KEGG: son:SO0417 pilin, putative YP_868071.1 TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; KEGG: ppr:PBPRA3199 nicotinate-nucleotide pyrophosphorylase YP_868072.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: son:SO0421 AmpD protein YP_868073.1 involved in regulation of beta-lactamase; putative signaling protein YP_868074.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex YP_868075.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_868076.1 TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: son:SO0425 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) YP_868077.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_868078.1 KEGG: son:SO0427 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_868079.1 PFAM: surface antigen (D15); Patatin; surface antigen variable number repeat protein; KEGG: son:SO0428 hypothetical protein YP_868080.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: son:SO0429 peptidase, M13 family YP_868081.1 YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate YP_868082.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_868083.1 binds specifically to the major sigma factor sigma 70; active in stationary phase YP_868084.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_868085.1 KEGG: son:SO0437 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_868086.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO0438 short chain dehydrogenase YP_868087.1 KEGG: son:SO0439 hypothetical protein YP_868088.1 KEGG: son:SO0440 hypothetical protein YP_868089.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_868090.1 involved in de novo purine biosynthesis YP_868091.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators YP_868092.1 PFAM: permease; KEGG: son:SO0444 hypothetical protein YP_868093.1 PFAM: band 7 protein; KEGG: son:SO0445 HflC protein, putative YP_868094.1 KEGG: son:SO0447 hypothetical protein YP_868095.1 KEGG: son:SO0448 hypothetical protein YP_868096.1 PFAM: PepSY-associated TM helix domain protein; KEGG: son:SO0449 hypothetical protein YP_868097.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0450 major facilitator family protein YP_868098.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: vpa:VPA0476 hypothetical protein YP_868099.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vch:VCA0025 transporter, NadC family YP_868100.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: son:SO0452 thioredoxin 2 YP_868101.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO0453 peptidyl-prolyl cis-trans isomerase FkbP YP_868102.1 KEGG: chy:CHY_1906 sensory box/GGDEF domain/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein YP_868103.1 KEGG: son:SO0454 hypothetical protein YP_868104.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: son:SO0455 hypothetical transporter YP_868105.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: son:SO0456 immunogenic-related protein YP_868106.1 KEGG: son:SO0458 hypothetical protein YP_868107.1 PFAM: protein of unknown function DUF853, NPT hydrolase putative; KEGG: son:SO0459 hypothetical protein YP_868108.1 KEGG: son:SO0461 hypothetical protein YP_868109.1 KEGG: son:SO0462 hypothetical protein YP_868110.1 PFAM: protein of unknown function, zinc metallopeptidase putative; KEGG: son:SO0463 hypothetical protein YP_868111.1 PFAM: NUDIX hydrolase; KEGG: son:SO0464 MutT/nudix family protein YP_868114.1 KEGG: vvy:VVA0185 hypothetical protein YP_868115.1 PFAM: response regulator receiver; KEGG: bja:blr0877 two-component response regulator YP_868116.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair. YP_868117.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway YP_868118.1 KEGG: son:SO0468.1 hypothetical protein YP_868119.1 KEGG: plu:plu4649 transposase, IS4 family YP_868120.1 KEGG: son:SO0470 hypothetical protein YP_868121.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: son:SO0471 hypothetical dioxygenase YP_868123.1 PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: cps:CPS_0994 hypothetical protein YP_868124.1 PFAM: protein of unknown function UPF0118; KEGG: son:SO0472 hypothetical protein YP_868125.1 KEGG: xcv:XCV4020 putative mitomycin resistance protein YP_868126.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO4003 response regulator YP_868127.1 KEGG: son:SO4002 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein, family 3; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_868128.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO3999 sensor histidine kinase YP_868129.1 PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: bbr:BB3096 putative peptidase YP_868131.1 SMART: helix-turn-helix domain protein; KEGG: plu:plu3627 putative transcriptional regulator YP_868132.1 KEGG: son:SO0474 hypothetical protein YP_868133.1 PFAM: Redoxin domain protein; KEGG: son:SO0476 thioredoxin, putative YP_868134.1 PFAM: cytochrome C biogenesis protein; KEGG: son:SO0477 cytochrome c-type biogenesis protein NrfF precursor YP_868135.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: son:SO0478 cytochrome c-type biogenesis protein CcmF YP_868136.1 KEGG: son:SO0479 cytochrome c, putative YP_868137.1 SMART: Rhodanese domain protein; KEGG: son:SO0480 hypothetical protein YP_868138.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: son:SO0481 peptidyl-prolyl cis-trans isomerase, FKBP-type YP_868139.1 KEGG: son:SO0482 formate-dependent nitrite reductase, NrfG protein YP_868140.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO0483 formate-dependent nitrite reductase, NrfC protein YP_868141.1 PFAM: Polysulphide reductase, NrfD; KEGG: son:SO0484 formate-dependent nitrite reductase, NrfD protein YP_868142.1 PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: son:SO0486 copper ABC transporter, periplasmic copper-binding protein YP_868143.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0487 copper ABC transporter, ATP-binding protein YP_868144.1 KEGG: son:SO0488 copper ABC transporter, permease protein YP_868145.1 PFAM: transcriptional regulator domain protein; KEGG: son:SO0490 transcriptional regulator YP_868146.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: son:SO0491 peptidase, M13 family YP_868147.1 PFAM: fatty acid cistrans isomerase; KEGG: vvy:VVA0636 fatty acid cis/trans isomerase YP_868148.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: son:SO4539 serine protease, subtilase family YP_868149.1 KEGG: son:SO0492 hypothetical flavoprotein oxygenase YP_868151.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin YP_868152.1 TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: son:SO0506 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases YP_868153.1 KEGG: son:SO0508 hypothetical protein YP_868154.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr4870 MFS permease YP_868155.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO0510 oxidoreductase, short-chain dehydrogenase/reductase family YP_868156.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: son:SO0511 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_868157.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_868158.1 PFAM: Class I peptide chain release factor; KEGG: son:SO0513 hypothetical protein YP_868159.1 KEGG: son:SO0514 hypothetical protein YP_868160.1 KEGG: son:SO0515 hypothetical protein YP_868161.1 KEGG: son:SO0516 hypothetical protein YP_868162.1 KEGG: son:SO0518 outer membrane efflux family protein, putative YP_868163.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO0519 cation efflux protein, putative YP_868164.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: son:SO0520 heavy metal efflux pump, CzcA family YP_868165.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: son:SO0521 hypothetical protein YP_868166.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_868167.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0523 transcriptional regulator, LysR family YP_868168.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO0524 HlyD family secretion protein YP_868169.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0525 drug resistance transporter, EmrB/QacA family protein YP_868170.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0526 acetyltransferase, GNAT family YP_868171.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: son:SO0527 hypothetical protein YP_868172.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: noc:Noc_1911 two component sigma-54 specific, transcriptional regulator, fis family YP_868173.1 KEGG: vpa:VPA0990 hypothetical protein YP_868174.1 PFAM: Peptidase M11, gametolysin; KEGG: vpa:VPA0991 hypothetical protein YP_868176.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0529 trpba operon transcriptional activator YP_868177.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO0530 transporter, LysE family YP_868178.1 PFAM: regulatory protein, ArsR; KEGG: son:SO0532 arsenical resistence operon repressor YP_868179.1 PFAM: Bile acid:sodium symporter; KEGG: son:SO0534 arsenical pump membrane protein, putative YP_868180.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate YP_868181.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0539 transporter, putative YP_868182.1 KEGG: son:SO0540 hypothetical protein YP_868183.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: son:SO0541 metallo-beta-lactamase family protein YP_868185.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1704; KEGG: son:SO0542 hypothetical protein YP_868186.1 KEGG: cjr:CJE1262 general glycosylation pathway protein YP_868187.1 KEGG: son:SO0543 hypothetical protein YP_868188.1 KEGG: son:SO0544 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_868189.1 PFAM: response regulator receiver; KEGG: son:SO0544.1 hypothetical CheY-homologous receiver domain protein YP_868190.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: son:SO0545 response regulator YP_868191.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO0546 ribosomal protein S6 modification protein YP_868192.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO0547 hypothetical protein YP_868193.1 PFAM: histone family protein DNA-binding protein; KEGG: son:SO0548 DNA-binding protein, HU family YP_868194.1 KEGG: son:SO0550 hypothetical protein YP_868195.1 KEGG: son:SO0551 hypothetical protein YP_868196.1 KEGG: son:SO0552 hypothetical protein YP_868197.1 KEGG: son:SO0553 hypothetical protein YP_868198.1 KEGG: son:SO0554 hypothetical protein YP_868199.1 PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: son:SO0555 hypothetical protein YP_868200.1 KEGG: son:SO0556 hypothetical protein YP_868201.1 PFAM: GumN family protein; KEGG: son:SO0557 hypothetical protein YP_868202.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0558 smtA protein YP_868203.1 PFAM: MaoC domain protein dehydratase; KEGG: son:SO0559 MaoC domain protein YP_868204.1 PFAM: aldo/keto reductase; KEGG: vpa:VPA1163 oxidoreductase, aldo/keto reductase 2 family YP_868205.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_868206.1 PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO0560.2 hypothetical small-conductance mechanosensitive channel YP_868207.1 KEGG: son:SO0562 hypothetical protein YP_868208.1 KEGG: son:SO0563 hypothetical protein YP_868210.1 KEGG: son:SO0564 hypothetical protein YP_868211.1 PFAM: periplasmic solute binding protein; KEGG: son:SO0565 adhesion protein, putative YP_868212.1 PFAM: ABC-3 protein; KEGG: son:SO0566 ABC 3 transport family protein YP_868213.1 TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0567 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_868214.1 PFAM: protein of unknown function DUF1260; KEGG: son:SO0568 hypothetical protein YP_868215.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO0569 sensory box/GGDEF family protein YP_868216.1 PFAM: response regulator receiver; KEGG: son:SO0570 response regulator YP_868217.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_868218.1 KEGG: son:SO0573 hypothetical protein YP_868219.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA YP_868220.1 PFAM: PhoH family protein; SMART: AAA ATPase; Nucleotide binding protein, PINc; KEGG: son:SO0576 PhoH family protein YP_868221.1 KEGG: son:SO0577 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Cache domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_868222.1 KEGG: son:SO0578 hypothetical protein YP_868223.1 PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: son:SO0579 serine/threonine protein kinase, putative YP_868224.1 KEGG: son:SO0581 hypothetical protein YP_868225.1 catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide YP_868226.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: son:SO0583 bacterioferritin-associated ferredoxin YP_868227.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: son:SO0584 methyl-accepting chemotaxis protein YP_868228.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO0585 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_868229.1 KEGG: son:SO0586 hypothetical protein YP_868230.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: son:SO0587 glycerophosphoryl diester phosphodiesterase YP_868231.1 PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO0588 transporter, putative YP_868232.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_3514 membrane protein YP_868233.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine YP_868234.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_868235.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_868236.1 KEGG: son:SO0595 hypothetical protein YP_868237.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: son:SO0598 YjeF protein YP_868238.1 PFAM: protein of unknown function UPF0079; KEGG: son:SO0599 conserved hypothetical protein TIGR00150 YP_868239.1 PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: son:SO0600 N-acetylmuramoyl-L-alanine amidase YP_868240.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_868241.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_868242.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: son:SO0603 host factor-I protein YP_868243.1 PFAM: GTP-binding protein, HSR1-related; KEGG: son:SO0604 GTP-binding protein HflX YP_868244.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: son:SO0605 hflK protein YP_868245.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: son:SO0606 hflC protein YP_868246.1 TIGRFAM: Twin-arginine translocation pathway signal; ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: son:SO0608 ubiquinol-cytochrome c reductase iron-sulfur subunit YP_868247.1 PFAM: Cytochrome b/b6, N-terminal domain protein; Cytochrome b/b6, C-terminal domain protein; KEGG: son:SO0609 ubiquinol-cytochrome c reductase, cytochrome b YP_868248.1 PFAM: cytochrome c1; KEGG: son:SO0610 ubiquinol-cytochrome c reductase cytochrome c1 subunit YP_868249.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation YP_868250.1 PFAM: Stringent starvation protein B; KEGG: son:SO0612 stringent starvation protein b YP_868251.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: son:SO0613 para-aminobenzoate synthase glutamine amidotransferase, component II YP_868252.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO0614 dipeptidyl peptidase IV, putative YP_868253.1 KEGG: son:SO0615 hypothetical protein YP_868254.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: son:SO0616 esterase, putative YP_868255.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate YP_868256.1 PFAM: arginine N-succinyltransferase beta subunit; KEGG: son:SO0618 arginine N-succinyltransferase YP_868257.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH YP_868258.1 KEGG: son:SO0620 hypothetical protein YP_868259.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO0621 sensor histidine kinase YP_868260.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO0622 DNA-binding response regulator YP_868261.1 KEGG: son:SO0623 hypothetical protein YP_868262.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons YP_868263.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO0625 hypothetical protein YP_868264.1 TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: son:SO0627 putative 2'-5' RNA ligase YP_868265.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: son:SO0628 GGDEF domain protein YP_868266.1 KEGG: son:SO0630 TonB-dependent receptor YP_868267.1 TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent, C-terminal domain protein; KEGG: son:SO0632 ATP-dependent helicase HrpB YP_868268.1 KEGG: son:SO0633 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase YP_868269.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO0635 peptidyl-prolyl cis-trans isomerase C YP_868271.1 KEGG: pst:PSPTO4272 hypothetical protein YP_868272.1 KEGG: pfo:Pfl_3191 hypothetical protein YP_868273.1 KEGG: vpa:VPA0336 hypothetical protein YP_868274.1 KEGG: son:SO4012 hypothetical protein YP_868275.1 KEGG: son:SO4011 hypothetical protein YP_868276.1 KEGG: vch:VCA0864 methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_868277.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: ppr:PBPRB0003 putative tetrathionate reductase, subunit A YP_868278.1 PFAM: Polysulphide reductase, NrfD; KEGG: eba:ebA3056 subunit C of a molybdoprotein, similar to that of tetrathionate reductase or polysulphide reductase YP_868279.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: bpa:BPP1030 tetrathionate reductase subunit B YP_868280.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ppr:PBPRB0007 hypothetical histidine kinase YP_868281.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: vfi:VFA0103 two component response regulator YP_868282.1 KEGG: son:SO4008 hypothetical protein YP_868283.1 KEGG: son:SO4007 hypothetical protein YP_868284.1 KEGG: son:SO4006 hypothetical protein YP_868285.1 KEGG: son:SO4005 hypothetical protein YP_868286.1 PFAM: sodium:dicarboxylate symporter; KEGG: son:SO4004 proton/glutamate symporter, putative YP_868288.1 PFAM: Uncharacterized protein UPF0114; KEGG: son:SO3997 hypothetical protein YP_868289.1 PFAM: protein of unknown function DUF262; KEGG: plu:plu2623 hypothetical protein YP_868291.1 PFAM: NERD domain protein; KEGG: pha:PSHAb0100 putative orphan protein YP_868292.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_868293.1 PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: son:SO3990 dipeptidyl peptidase IV YP_868294.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO3988 aerobic respiration control protein ArcA YP_868295.1 KEGG: son:SO3987 hypothetical protein YP_868296.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive YP_868297.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: son:SO3985 hypothetical protein YP_868298.1 PFAM: Mg2 transporter protein, CorA family protein; KEGG: son:SO3984 magnesium transporter, putative YP_868299.1 PFAM: Uncharacterized conserved protein UCP006287; KEGG: son:SO3983 hypothetical protein YP_868300.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: son:SO3982 DNA-binding nitrate/nitrite response regulator YP_868301.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: son:SO3981 nitrate/nitrite sensor protein NarQ YP_868302.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552 YP_868303.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: vvy:VVA0651 GGDEF family protein YP_868304.1 KEGG: son:SO3975 hypothetical protein YP_868305.1 KEGG: son:SO3974 hypothetical protein YP_868307.1 PFAM: protein of unknown function RIO1; KEGG: son:SO3973 RIO1/ZK632.3/MJ0444 family, putative YP_868308.1 PFAM: transposase IS3/IS911 family protein; KEGG: son:SO3972 hypothetical transposase YP_868309.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: son:SO3969 OmpA family protein YP_868310.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: son:SO3967 hypothetical protein YP_868311.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO3966 magnesium transporter YP_868312.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: son:SO3965 phosphocarrier protein NPR YP_868313.1 PFAM: Uncharacterized P-loop ATPase protein UPF0042; KEGG: son:SO3964 hypothetical protein YP_868314.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: son:SO3963 nitrogen regulatory IIA protein YP_868315.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3962 ribosomal subunit interface protein YP_868316.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_868317.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3960 ABC transporter, ATP-binding protein YP_868318.1 PFAM: OstA family protein; KEGG: son:SO3959 hypothetical protein YP_868319.1 PFAM: protein of unknown function DUF1239; KEGG: son:SO3958 hypothetical protein YP_868320.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis YP_868321.1 TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KEGG: son:SO3956 carbohydrate isomerase, KpsF/GutQ family YP_868322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3954 ABC transporter, ATP-binding protein, putative YP_868323.1 PFAM: protein of unknown function DUF140; KEGG: son:SO3953 putative membrane protein YP_868324.1 PFAM: Mammalian cell entry related domain protein; KEGG: son:SO3952 mce-related protein YP_868325.1 PFAM: toluene tolerance family protein; KEGG: son:SO3951 hypothetical protein YP_868326.1 KEGG: son:SO3950 SpoIIAA family protein YP_868327.1 PFAM: BolA family protein; KEGG: son:SO3949 BolA/YrbA family protein YP_868328.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_868329.1 PFAM: regulatory protein, TetR; KEGG: rso:RS01911 putative transcription regulator protein YP_868330.1 KEGG: rso:RS01912 hypothetical protein YP_868332.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: bur:Bcep18194_A4725 phenylacetic acid degradation-related protein YP_868333.1 TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: son:SO3943 protease DegS YP_868334.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: son:SO3942 serine protease, HtrA/DegQ/DegS family YP_868335.1 PFAM: AFG1-family ATPase; KEGG: son:SO3941 hypothetical protein YP_868336.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_868337.1 forms a direct contact with the tRNA during translation YP_868338.1 KEGG: son:SO3938 hypothetical protein YP_868339.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_868340.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO3936 sodium-type flagellar protein MotX YP_868341.1 KEGG: son:SO3935 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain protein; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein YP_868342.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA YP_868343.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3933 hypothetical protein YP_868344.1 PFAM: protein of unknown function DUF481; KEGG: son:SO3931 putative salt-induced outer membrane protein YP_868345.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_868346.1 binds single-stranded DNA at the primosome assembly site YP_868347.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_868348.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_868349.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: son:SO3926 GTP-binding protein YP_868350.1 catalyzes the formation of biotin from dethiobiotin and sulfur YP_868351.1 KEGG: son:SO3924 hypothetical protein YP_868352.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain YP_868353.1 KEGG: son:SO3922 formate dehydrogenase, putative YP_868354.1 PFAM: iron hydrogenase, small subunit; KEGG: son:SO3921 periplasmic Fe hydrogenase, small subunit YP_868355.1 TIGRFAM: hydrogenases, Fe-only; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; hydrogenase large subunit domain protein; KEGG: son:SO3920 periplasmic Fe hydrogenase, large subunit YP_868356.1 KEGG: son:SO3918 hypothetical protein YP_868357.1 KEGG: son:SO3917 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase YP_868358.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_868359.1 KEGG: son:SO3915 putative chemotaxis protein CheX YP_868360.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO3914 TonB-dependent receptor, putative YP_868361.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO3913 putative hydroxylase YP_868362.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: son:SO3912 TIM-barrel protein, yjbN family YP_868363.1 KEGG: son:SO3910 hypothetical protein YP_868364.1 KEGG: son:SO3909 hypothetical protein YP_868365.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO3908 enoyl-CoA hydratase/isomerase family protein YP_868366.1 PFAM: protein of unknown function DUF461; KEGG: son:SO3907 hypothetical protein YP_868367.1 KEGG: son:SO3906 hypothetical protein YP_868368.1 KEGG: son:SO3905 hypothetical protein YP_868369.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell YP_868370.1 TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase; KEGG: son:SO3903 ADP-ribose pyrophosphatase YP_868371.1 PFAM: protein of unknown function DUF1249; KEGG: son:SO3902 hypothetical protein YP_868372.1 PFAM: metallophosphoesterase; Calcineurin phosphoesterase C-terminal domain protein; KEGG: son:SO3901 lacZ expression regulator YP_868373.1 PFAM: protein of unknown function UPF0227; KEGG: son:SO3900 hypothetical protein YP_868374.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_868375.1 KEGG: son:SO3898 L-sorbosone dehydrogenase, putative YP_868376.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_868377.1 PFAM: porin, Gram-negative type; KEGG: son:SO3896 outer membrane porin, putative YP_868378.1 PFAM: porin, Gram-negative type; KEGG: son:SO3896 outer membrane porin, putative YP_868379.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: son:SO3895 HesA/MoeB/ThiF family protein YP_868380.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3894 sensor histidine kinase YP_868381.1 KEGG: son:SO3892 hypothetical protein YP_868383.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; KEGG: son:SO3890 methyl-accepting chemotaxis protein YP_868384.1 PFAM: protein of unknown function DUF1508; KEGG: son:SO3888 hypothetical protein YP_868385.1 Part of the ABC transporter complex modABC involved in molybdenum import YP_868386.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE YP_868387.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO3863 molybdenum ABC transporter, periplasmic molybdenum-binding protein YP_868388.1 TIGRFAM: molybdate transport repressor, ModE; Molybdenum-pterin binding; PFAM: regulatory protein, LysR; TOBE domain protein; KEGG: son:SO3862 molybdenum transport regulatory protein ModE YP_868389.1 TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: son:SO3861 iron-sulfur cluster-binding protein YP_868390.1 SMART: extracellular solute-binding protein, family 3; KEGG: son:SO3860 hypothetical protein YP_868391.1 KEGG: son:SO3859 cyclic nucleotide phosphodiesterase, putative; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein YP_868392.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO3857 PAP2 family protein YP_868393.1 KEGG: son:SO3856 hypothetical protein YP_868394.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate YP_868395.1 PFAM: protein of unknown function DUF1456; KEGG: son:SO3852 hypothetical protein YP_868396.1 KEGG: vpa:VP2681 putative manganese transporter YP_868397.1 PFAM: membrane-flanked domain; KEGG: son:SO3849 hypothetical protein YP_868398.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa0840 TonB-dependent receptor YP_868399.1 PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: sme:SMb20420 putative glutathione S-transferase protein YP_868400.1 KEGG: son:SO3848 hypothetical protein YP_868401.1 KEGG: son:SO3847 hypothetical protein YP_868402.1 KEGG: son:SO3846 hypothetical protein YP_868403.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: son:SO3844 peptidase, M13 family YP_868404.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: ssn:SSO_2239 16S pseudouridylate 516 synthase YP_868405.1 KEGG: son:SO3842 hypothetical protein YP_868406.1 KEGG: son:SO3841 hypothetical protein YP_868407.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO3840 RNA polymerase sigma-70 factor, ECF subfamily YP_868408.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3838 methyl-accepting chemotaxis protein YP_868409.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_868410.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_868411.1 PFAM: outer membrane lipoprotein LolB; KEGG: son:SO3835 outer membrane lipoprotein LolB YP_868412.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_868413.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_868414.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: son:SO3832 hemK family protein YP_868415.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO3831 acetyltransferase, GNAT family YP_868416.1 PFAM: Invasion gene expression up-regulator, SirB; KEGG: son:SO3830 hypothetical protein YP_868417.1 KEGG: son:SO3829 hypothetical protein YP_868418.1 PFAM: protein of unknown function DUF819; KEGG: son:SO3828 hypothetical protein YP_868419.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_868420.1 KEGG: son:SO3822 hypothetical protein YP_868421.1 PFAM: EAL domain protein; KEGG: son:SO3821 rtn protein YP_868422.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: cps:CPS_3995 ammonium transporter YP_868423.1 PFAM: nitrogen regulatory protein P-II; KEGG: son:SO3819 nitrogen regulatory protein P-II YP_868424.1 TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; KEGG: son:SO3817 2-dehydropantoate 2-reductase YP_868425.1 PFAM: VanZ family protein; KEGG: son:SO3816 hypothetical protein YP_868426.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_868427.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3814 AmpG protein, putative YP_868428.1 KEGG: son:SO3813 hypothetical protein YP_868429.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO3812 peptidyl-prolyl cis-trans isomerase A YP_868430.1 PFAM: Uncharacterized lipoprotein; KEGG: son:SO3811 lipoprotein, putative YP_868431.1 KEGG: son:SO3810 OmpA-like transmembrane domain protein YP_868432.1 KEGG: son:SO3808 hypothetical protein YP_868433.1 KEGG: son:SO3807 sterol desaturase family protein YP_868434.1 KEGG: cps:CPS_1725 hypothetical protein YP_868435.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO3805 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_868436.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: son:SO3804 phenylacrylic acid decarboxylase, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative YP_868437.1 TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: son:SO3803 hypoxanthine phosphoribosyltransferase YP_868438.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3802 ABC transporter, ATP-binding protein YP_868439.1 PFAM: ABC-2 type transporter; KEGG: son:SO3801 ABC transporter, permease protein YP_868441.1 PFAM: protease-associated PA domain protein; KEGG: ade:Adeh_2937 protease-associated PA YP_868442.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase YP_868443.1 PFAM: pseudouridine synthase; KEGG: hch:HCH_04661 pseudouridylate synthases, 23S RNA-specific YP_868444.1 PFAM: peptidase U32; KEGG: son:SO3797 peptidase, U32 family YP_868445.1 PFAM: protein of unknown function DUF1696; KEGG: son:SO3796 hypothetical protein YP_868446.1 PFAM: Abortive infection protein; KEGG: son:SO3795 hypothetical protein YP_868447.1 PFAM: MORN variant repeat protein; KEGG: son:SO3794 hypothetical protein YP_868448.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: son:SO3793 hypothetical protein YP_868449.1 KEGG: son:SO3792 hypothetical protein YP_868450.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase M19, renal dipeptidase; KEGG: son:SO3791 renal dipeptidase family protein YP_868451.1 PFAM: Fe-S metabolism associated SufE; KEGG: son:SO3790 hypothetical protein YP_868452.1 TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO3789 aminotransferase, class V YP_868453.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: vch:VC1405 methyl-accepting chemotaxis protein YP_868454.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO3783 ATP-dependent RNA helicase, DEAD box family YP_868455.1 KEGG: son:SO3782 hypothetical protein YP_868456.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c YP_868457.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c YP_868458.1 TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: son:SO3778 adenylate cyclase CyaB, putative YP_868459.1 KEGG: plu:plu4649 transposase, IS4 family YP_868460.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: son:SO3777 hypothetical protein YP_868461.1 PFAM: protein of unknown function DUF599; KEGG: son:SO3776 hypothetical protein YP_868463.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain YP_868464.1 PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: son:SO3772 SH3 domain protein YP_868465.1 PFAM: phosphate transporter; KEGG: son:SO3771 phosphate transporter, putative YP_868466.1 PFAM: protein of unknown function DUF47; KEGG: son:SO3770 conserved hypothetical protein TIGR00153 YP_868467.1 PFAM: adenylate cyclase; KEGG: son:SO3769 hypothetical protein YP_868468.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: son:SO3768 ion transporter YP_868469.1 KEGG: son:SO3767 hypothetical protein YP_868470.1 KEGG: son:SO3766 hypothetical protein YP_868471.1 PFAM: PspA/IM30 family protein; KEGG: son:SO3765 hypothetical protein YP_868472.1 KEGG: son:SO3764 hypothetical protein YP_868473.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_868474.1 PFAM: protein of unknown function DUF350; KEGG: son:SO3762 hypothetical protein YP_868475.1 KEGG: son:SO3761 hypothetical protein YP_868476.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_868477.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: son:SO3759 GGDEF domain protein YP_868478.1 PFAM: protein of unknown function DUF897; KEGG: son:SO3758 hypothetical protein YP_868479.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3757 rubisco operon transcriptional regulator YP_868480.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vvu:VV12509 putative threonine efflux protein YP_868481.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: vpa:VPA1564 hypothetical protein YP_868482.1 PFAM: regulatory protein, MerR; KEGG: vpa:VPA1563 putative transcriptional regulator YP_868483.1 PFAM: AFG1-family ATPase; KEGG: son:SO3756 hypothetical ATPase YP_868484.1 PFAM: protein of unknown function DUF583; KEGG: son:SO1662 hypothetical Ccm2-related protein YP_868485.1 PFAM: peptidase M16 domain protein; KEGG: son:SO3751 hypothetical protein YP_868486.1 PFAM: peptidase M16 domain protein; KEGG: gvi:glr3686 probable peptidase YP_868487.1 KEGG: son:SO3749 hypothetical protein YP_868488.1 PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: son:SO3748 LysM domain protein YP_868489.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon YP_868490.1 KEGG: rfr:Rfer_1886 putative nitric oxide reductase (subunit B) transmembrane protein YP_868491.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli YP_868492.1 TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: son:SO3746 lipid A biosynthesis lauroyl acyltransferase YP_868493.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose YP_868494.1 KEGG: son:SO3744 hypothetical protein YP_868495.1 PFAM: regulatory protein, TetR; KEGG: son:SO3743 transcriptional regulator, TetR family YP_868496.1 KEGG: son:SO3741.1 hypothetical protein YP_868497.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme YP_868498.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm YP_868499.1 TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: son:SO3738 sulfite reductase (NADPH) flavoprotein alpha-component YP_868500.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide YP_868501.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_868502.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan YP_868503.1 KEGG: son:SO3733 hypothetical protein YP_868504.1 KEGG: son:SO3731 hypothetical protein YP_868505.1 PFAM: phospholipase A1; KEGG: hch:HCH_01113 outer membrane phospholipase A YP_868506.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO3728 uroporphyrin-III C-methyltransferase YP_868507.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_868508.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ YP_868509.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ppr:PBPRA3309 putative sodium/sulfate symporter YP_868510.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis YP_868511.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_01618 signal transduction histidine kinase regulating C4-dicarboxylate transport system YP_868512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: hch:HCH_01619 FOG: EAL domain YP_868513.1 KEGG: son:SO3722 hypothetical protein YP_868514.1 PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_0120 transporter, MFS superfamily YP_868515.1 KEGG: son:SO3720 protoporphyrinogen oxidase YP_868516.1 KEGG: son:SO3719 hypothetical protein YP_868517.1 KEGG: vpa:VP0375 putative lipoprotein YP_868518.1 PFAM: DSBA oxidoreductase; KEGG: son:SO3718 thiol:disulfide interchange protein, DsbA family YP_868519.1 PFAM: heat shock protein DnaJ domain protein; KEGG: son:SO3716 DnaJ domain protein YP_868520.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive YP_868521.1 KEGG: son:SO3714 sugar-binding protein, putative YP_868524.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1042 amino acid ABC transporter, ATP-binding protein YP_868525.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1043 amino acid ABC transporter, permease protein YP_868526.1 PFAM: extracellular solute-binding protein, family 3; KEGG: son:SO1044 amino acid ABC transporter, periplasmic amino acid-binding protein YP_868527.1 KEGG: son:SO1045 hypothetical protein YP_868528.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1046 transcriptional regulator, LysR family YP_868529.1 PFAM: LrgA family protein; KEGG: son:SO1047 holin-like protein YP_868530.1 PFAM: LrgB family protein; KEGG: son:SO1048 hypothetical protein YP_868531.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1049 acetyltransferase, GNAT family YP_868532.1 PFAM: carbon starvation protein CstA; KEGG: pha:PSHAb0210 cold-shock regulated carbon starvation protein A YP_868533.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans YP_868534.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_868535.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: vpa:VPA1697 putative transcriptional regulator YP_868536.1 PFAM: phosphate transporter; KEGG: son:SO1052 low-affinity inorganic phosphate transporter YP_868537.1 PFAM: protein of unknown function DUF72; KEGG: son:SO1053.2 hypothetical protein YP_868538.1 KEGG: son:SO1055 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_868539.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: son:SO1056 methyl-accepting chemotaxis protein YP_868540.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO1059 aminopeptidase N YP_868541.1 KEGG: son:SO1060 hypothetical protein YP_868542.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO1061 TPR domain protein YP_868543.1 TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; KEGG: son:SO1062 polypeptide deformylase YP_868544.1 PFAM: SlyX family protein; KEGG: son:SO1063 SlyX protein YP_868545.1 PFAM: WD-40 repeat protein; KEGG: son:SO1064 hypothetical WD domain protein YP_868546.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1065 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA YP_868547.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: son:SO1066 extracellular nuclease YP_868548.1 KEGG: son:SO1067 hypothetical protein YP_868549.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: son:SO1068 hypothetical protein YP_868550.1 KEGG: son:SO1069 hypothetical protein YP_868551.1 PFAM: Catalase domain protein; KEGG: son:SO1070 catalase YP_868552.1 PFAM: protein of unknown function UPF0016; KEGG: son:SO1071 hypothetical protein YP_868553.1 PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: son:SO1074 tyrosine-specific transport protein, putative YP_868554.1 KEGG: son:SO1075 hypothetical protein YP_868555.1 KEGG: cps:CPS_3502 putative lipoprotein YP_868556.1 PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_04311 outer membrane protein and related peptidoglycan-associated (LipO)protein YP_868557.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pha:PSHAa0085 ribosomal RNA pseudouridylate synthase YP_868558.1 KEGG: son:SO1086 hypothetical protein YP_868559.1 PFAM: Na+/H+ antiporter NhaC; KEGG: son:SO1087 Na+/H+ antiporter family protein YP_868560.1 KEGG: tbd:Tbd_0710 hypothetical protein YP_868561.1 PFAM: FMN-binding domain protein; KEGG: tbd:Tbd_0709 putative signal peptide protein YP_868562.1 KEGG: son:SO1090 ApbE family protein, putative YP_868563.1 KEGG: tcx:Tcr_0415 hypothetical protein YP_868564.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ilo:IL2343 methyl-accepting chemotaxis protein (contains HAMP domain) YP_868565.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO1091 hypothetical protein YP_868566.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: son:SO1092 transcriptional regulator, AraC/XylS family YP_868567.1 KEGG: son:SO1094 hypothetical transcription elongation factor YP_868568.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: ppu:PP4650 ubiquinol oxidase subunit II, cyanide insensitive YP_868569.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: ppu:PP4651 ubiquinol oxidase subunit I, cyanide insensitive YP_868570.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: eca:ECA3004 putative bifunctional protein, includes [GntR-family transcriptional regulator and aminotransferase] YP_868571.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO1095 O-acetylhomoserine (thiol)-lyase YP_868572.1 KEGG: son:SO1096 hypothetical protein YP_868573.1 PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO1097 putative ribosomal RNA small subunit methyltransferase D YP_868574.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: son:SO1098 hypothetical alkylated DNA repair protein YP_868575.1 PFAM: BolA family protein; KEGG: son:SO1099 bolA protein YP_868576.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: son:SO1100 extracellular solute-binding protein, family 7 YP_868577.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_868578.1 PFAM: TonB-dependent receptor; KEGG: son:SO1102 TonB-dependent receptor C-terminal region domain lipoprotein YP_868579.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_868580.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_868581.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_868582.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm YP_868583.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. YP_868584.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_868585.1 PFAM: ApbE family lipoprotein; KEGG: son:SO1109 thiamin biosynthesis lipoprotein ApbE YP_868586.1 PFAM: protein of unknown function DUF539; KEGG: son:SO1110 hypothetical protein YP_868587.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: son:SO1111 bacterioferritin subunit 2 YP_868588.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: son:SO1112 bacterioferritin subunit 1 YP_868589.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO1112.1 hypothetical chemotactic transducer YP_868590.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_868591.1 TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: son:SO1115 aminoacyl-histidine dipeptidase YP_868592.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: son:SO1117 cytosol aminopeptidase, putative YP_868593.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ilo:IL1581 outer membrane receptor for ferric siderophore YP_868594.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: son:SO1120 xanthine/uracil permease family protein YP_868595.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_868596.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_868597.1 KEGG: son:SO1123 hypothetical protein YP_868598.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: son:SO1124 conserved hypothetical protein TIGR00011 YP_868599.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO1125 integral membrane domain protein YP_868600.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_868601.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_868602.1 PFAM: protein of unknown function DUF450; KEGG: vpa:VPA1572 hypothetical protein YP_868603.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO1136 ATP-dependent RNA helicase, DEAD box family YP_868604.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bpm:BURPS1710b_2160 ribosomal-protein-serine acetyltransferase YP_868605.1 PFAM: peptidase M48, Ste24p; KEGG: son:SO1137 hypothetical protein YP_868606.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1139 peptidyl-prolyl cis-trans isomerase FklB YP_868607.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_868608.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_868609.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_868610.1 SMART: extracellular solute-binding protein, family 3; KEGG: son:SO1143 hypothetical protein YP_868611.1 PFAM: chemotaxis sensory transducer; KEGG: son:SO1144 methyl-accepting chemotaxis protein YP_868612.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO1145 magnesium transporter YP_868613.1 KEGG: son:SO1146 hypothetical protein YP_868614.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: son:SO1148 hypothetical protein YP_868615.1 KEGG: cps:CPS_3405 hypothetical protein YP_868616.1 PFAM: protein of unknown function DUF692; KEGG: cps:CPS_3406 hypothetical protein YP_868617.1 KEGG: cps:CPS_3407 putative lipoprotein YP_868618.1 SMART: PUA domain containing protein; KEGG: son:SO1149 hypothetical SAM-dependent methyltransferase YP_868619.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_868620.1 PFAM: protein of unknown function DUF808; KEGG: son:SO1151 hypothetical protein YP_868621.1 PFAM: 3'-5' exonuclease; KEGG: son:SO1153 exonuclease, putative YP_868622.1 KEGG: son:SO1154 hypothetical protein YP_868623.1 KEGG: son:SO1155 hypothetical protein YP_868624.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1156 TonB-dependent receptor YP_868625.1 KEGG: son:SO1157 hypothetical protein YP_868626.1 PFAM: Ferritin, Dps family protein; KEGG: son:SO1158 Dps family protein YP_868627.1 KEGG: son:SO1159 hypothetical protein YP_868628.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1160 ribosomal-protein-alanine acetyltransferase YP_868629.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_868630.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein YP_868631.1 PFAM: protein of unknown function DUF493; KEGG: son:SO1163 hypothetical protein YP_868632.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: son:SO1164 D-alanyl-D-alanine carboxypeptidase YP_868633.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: son:SO1165 rare lipoprotein A YP_868634.1 TIGRFAM: lytic murein transglycosylase B; KEGG: son:SO1166 membrane-bound lytic transglycosylase, putative YP_868635.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: son:SO1167 rod shape-determining protein RodA YP_868636.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: son:SO1168 penicillin-binding protein 2 YP_868637.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_868638.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: son:SO1170 iojap domain protein YP_868639.1 TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; KEGG: son:SO1171 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_868640.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: son:SO1172 DNA polymerase III delta subunit YP_868641.1 PFAM: Rare lipoprotein B; KEGG: son:SO1173 rare lipoprotein B YP_868642.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_868643.1 PFAM: protein of unknown function DUF1451; KEGG: son:SO1175 hypothetical protein YP_868644.1 PFAM: methylation site containing protein; KEGG: son:SO1176 hypothetical protein YP_868645.1 Transfers the fatty acyl group on membrane lipoproteins YP_868646.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: son:SO1178 magnesium and cobalt efflux protein CorC YP_868647.1 PFAM: protein of unknown function UPF0054; KEGG: son:SO1179 conserved hypothetical protein TIGR00043 YP_868648.1 PFAM: PhoH family protein; KEGG: son:SO1180 PhoH family protein YP_868649.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_868650.1 KEGG: son:SO1182 hypothetical protein YP_868651.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO1183 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_868652.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_868653.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_868654.1 KEGG: son:SO1187 hypothetical protein YP_868655.1 KEGG: son:SO1188 hypothetical protein YP_868656.1 KEGG: son:SO1189 lysozyme YP_868657.1 KEGG: son:SO1190 hypothetical protein YP_868658.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: son:SO1191 transcription elongation factor GreA YP_868659.1 KEGG: son:SO1192 hypothetical protein YP_868660.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_868661.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_868662.1 PFAM: protein of unknown function UPF0044; KEGG: son:SO1195 putative RNA-binding protein containing KH domain YP_868663.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit YP_868664.1 KEGG: son:SO1197 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_868665.1 TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; KEGG: son:SO1198 dihydropteroate synthase YP_868666.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_868667.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_868668.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: son:SO1201 preprotein translocase, SecG subunit YP_868669.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_868670.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_868671.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_868672.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_868673.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_868674.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_868675.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO1208 GGDEF domain protein YP_868676.1 PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: son:SO1209 polyribonucleotide nucleotidyltransferase YP_868677.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing YP_868678.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_868679.1 PFAM: TatD-related deoxyribonuclease; KEGG: son:SO1213 hydrolase, TatD family YP_868680.1 PFAM: Na dependent nucleoside transporter; nucleoside recognition domain protein; Na dependent nucleoside transporter domain protein; KEGG: son:SO1214 NupC family protein YP_868681.1 PFAM: nucleoside-specific channel-forming protein, Tsx; KEGG: son:SO1215 outer membrane protein OmpK, putative YP_868682.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_868683.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate YP_868684.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_868685.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate YP_868686.1 KEGG: son:SO1222 membrane protein YP_868687.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO1223 phosphoserine phosphatase YP_868688.1 KEGG: son:SO1224 hypothetical protein YP_868689.1 PFAM: type IV pilus assembly PilZ; KEGG: son:SO1225 hypothetical protein YP_868690.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_868691.1 PFAM: type IV pilus assembly PilZ; KEGG: son:SO1227 hypothetical protein YP_868692.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes YP_868693.1 periplasmic sensory protein associated with the TorRS two-component regulatory system YP_868694.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: son:SO1230 sensor histidine kinase/response regulator TorS YP_868695.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor YP_868696.1 TIGRFAM: Twin-arginine translocation pathway signal; trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: son:SO1232 trimethylamine-N-oxide reductase YP_868697.1 TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO1233 tetraheme cytochrome c YP_868698.1 PFAM: periplasmic nitrate reductase NapE; KEGG: son:SO1234 warning TorE protein YP_868699.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: son:SO1236 xanthine/uracil permease family protein YP_868700.1 PFAM: CBS domain containing protein; KEGG: son:SO1237 acetoin utilization protein AcuB, putative YP_868701.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO1238 acyltransferase family protein YP_868702.1 PFAM: metallophosphoesterase; KEGG: son:SO1239 hypothetical protein YP_868703.1 PFAM: nucleoside recognition domain protein; KEGG: son:SO1245 hypothetical protein YP_868704.1 KEGG: son:SO1247 hypothetical protein YP_868705.1 PFAM: peptidase U32; KEGG: son:SO1248 hypothetical peptidase YP_868706.1 PFAM: peptidase U32; KEGG: son:SO1249 peptidase, U32 family YP_868707.1 PFAM: Sterol-binding domain protein; KEGG: son:SO1250 hypothetical protein YP_868708.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1251 ferredoxin, 4Fe-4S YP_868709.1 PFAM: peptidase U32; KEGG: son:SO1252 peptidase, U32 family YP_868710.1 KEGG: son:SO1254 hypothetical protein YP_868711.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: son:SO1255 cyclic nucleotide phosphodiesterase, putative YP_868712.1 PFAM: thioesterase superfamily protein; KEGG: son:SO1256 hypothetical 4-hydroxybenzoyl-CoA thioesterase YP_868713.1 PFAM: adenylosuccinate synthetase; KEGG: son:SO1258 adenylosuccinate synthetase, putative YP_868714.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1259 transcriptional regulator, LysR family YP_868715.1 SMART: extracellular solute-binding protein, family 3; KEGG: son:SO1260 hypothetical amino acid ABC transporter YP_868716.1 PFAM: OsmC family protein; KEGG: son:SO3495 hypothetical protein YP_868717.1 PFAM: regulatory protein, TetR; KEGG: son:SO3494 transcriptional regulator, TetR family YP_868718.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3493 RND multidrug efflux membrane fusion protein MexE YP_868719.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: son:SO3492 RND multidrug efflux transporter MexF YP_868720.1 KEGG: son:SO3491 HDIG domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_868721.1 PFAM: protein of unknown function DUF88; KEGG: son:SO3490 hypothetical protein YP_868722.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO3488 transcriptional regulator, AraC/XylS family YP_868723.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3485 drug resistance transporter, Bcr/CflA family protein YP_868724.1 PFAM: acriflavin resistance protein; KEGG: son:SO3484 AcrB/AcrD/AcrF family protein YP_868725.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3483 HlyD family secretion protein YP_868726.1 KEGG: son:SO3481 hypothetical protein YP_868727.1 PFAM: metallophosphoesterase; KEGG: son:SO3480 hypothetical protein phosphatase YP_868728.1 KEGG: son:SO3477 pilin biogenesis protein-related protein YP_868729.1 KEGG: son:SO3476 hypothetical protein YP_868730.1 KEGG: son:SO3475 putative protein-disulfide isomerase YP_868731.1 PFAM: beta-lactamase domain protein; KEGG: son:SO3474 metallo-beta-lactamase family protein YP_868732.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3473 transcriptional regulator, LysR family YP_868733.1 PFAM: conserved hypothetical protein 341; KEGG: ava:Ava_2040 hypothetical protein YP_868734.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_868735.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_868736.1 TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone domain protein; KEGG: son:SO3470 ATP-cone domain protein YP_868737.1 TIGRFAM: riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase-like; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: son:SO3469 riboflavin biosynthesis protein RibD YP_868738.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_868739.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; KEGG: son:SO3467 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative YP_868740.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_868741.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_868742.1 TIGRFAM: thiamine-monophosphate kinase; KEGG: son:SO3464 thiamin-monophosphate kinase YP_868743.1 KEGG: son:SO3463 phosphatidylglycerophosphatase A YP_868744.1 KEGG: pha:PSHAa1851 universal stress protein YP_868745.1 TIGRFAM: DNA repair protein RecN; KEGG: son:SO3462 DNA repair protein RecN YP_868746.1 KEGG: son:SO3461 transporter, putative YP_868747.1 KEGG: son:SO3460 transcriptional regulator, LysR family YP_868748.1 KEGG: son:SO3459 hypothetical protein YP_868749.1 PFAM: protein of unknown function DUF416; KEGG: son:SO3458 hypothetical protein YP_868750.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system YP_868751.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S] YP_868752.1 TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; KEGG: son:SO3455 GTP pyrophosphokinase YP_868753.1 KEGG: cps:CPS_1809 putative protease YP_868755.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era YP_868756.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_868757.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_868758.1 PFAM: Septum formation initiator; KEGG: son:SO3439 cell division protein FtsB YP_868759.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_868760.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_868761.1 PFAM: tRNA pseudouridine synthase D, TruD; KEGG: son:SO3436 tRNA pseudouridine synthase D YP_868762.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_868763.1 TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: son:SO3434 protein-L-isoaspartate O-methyltransferase YP_868764.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: son:SO3433 lipoprotein NlpD YP_868765.1 TIGRFAM: RNA polymerase sigma factor RpoS; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: son:SO3432 RNA polymerase sigma-38 factor YP_868766.1 This protein performs the mismatch recognition step during the DNA repair process YP_868767.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_868768.1 PFAM: regulatory protein RecX; KEGG: son:SO3429 regulatory protein RecX YP_868769.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_868770.1 TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: son:SO3427 aspartokinase YP_868771.1 affects carbohydrate metabolism; has regulatory role in many processes YP_868772.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_868773.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: son:SO3423 DNA polymerase III, chi subunit YP_868774.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3422 ribosomal subunit interface protein YP_868775.1 PFAM: cytochrome B561; KEGG: son:SO3421 b-type cytochrome, putative YP_868776.1 PFAM: cytochrome c, class II; KEGG: son:SO3420 cytochrome c' YP_868777.1 TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: son:SO3419 trp operon repressor YP_868778.1 KEGG: son:SO3418 hypothetical protein YP_868779.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO3417 peptidyl-prolyl cis-trans isomerase SlyD YP_868780.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways YP_868781.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_868782.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_868784.1 PFAM: extracellular solute-binding protein, family 3; KEGG: son:SO3412 extracellular solute-binding proteins, family 3 protein YP_868785.1 PFAM: peptidase S41; WD40 domain protein beta Propeller; SMART: PDZ/DHR/GLGF domain protein; KEGG: son:SO3411 protease, putative YP_868786.1 KEGG: son:SO3410 hypothetical protein YP_868787.1 PFAM: OsmC family protein; KEGG: son:SO3409 OsmC/Ohr family protein YP_868788.1 KEGG: son:SO3408 hypothetical protein YP_868789.1 PFAM: PepSY-associated TM helix domain protein; KEGG: son:SO3407 hypothetical protein YP_868790.1 KEGG: son:SO3406 hypothetical protein YP_868791.1 KEGG: son:SO3404 methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein YP_868792.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3403 ribosomal subunit interface protein YP_868793.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: xcv:XCV1261 two-component system regulatory protein YP_868794.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: xcb:XC_3118 two-component system sensor protein YP_868795.1 PFAM: isochorismatase hydrolase; KEGG: pfl:PFL_2630 isochorismatase family protein YP_868796.1 PFAM: protein of unknown function DUF28; KEGG: son:SO3401 hypothetical protein YP_868797.1 PFAM: chemotaxis sensory transducer; KEGG: cps:CPS_4961 methyl-accepting chemotaxis protein YP_868798.1 KEGG: son:SO3395 hypothetical protein YP_868799.1 PFAM: regulatory protein, TetR; KEGG: son:SO3393 transcriptional regulator, TetR family YP_868800.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: son:SO3392 oxidoreductase, FMN-binding YP_868801.1 KEGG: son:SO3391 ATP-dependent protease, putative YP_868802.1 KEGG: son:SO3389 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_868803.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO3388 ATP-dependent RNA helicase, DEAD box family YP_868804.1 KEGG: son:SO3387 hypothetical protein YP_868805.1 PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: son:SO3386 hypothetical protein YP_868806.1 PFAM: regulatory protein, MerR; KEGG: son:SO3385 transcriptional regulator, MerR family YP_868807.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: son:SO3384 deoxyribodipyrimidine photolyase YP_868808.1 KEGG: son:SO3383 transcriptional regulator-related protein YP_868809.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO3382 oxidoreductase, short-chain dehydrogenase/reductase family YP_868810.1 PFAM: amine oxidase; KEGG: son:SO3381 hypothetical protein YP_868811.1 PFAM: protein of unknown function DUF1365; KEGG: son:SO3380 hypothetical protein YP_868812.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO3379 cyclopropane-fatty-acyl-phospholipid synthase YP_868813.1 KEGG: son:SO3378 hypothetical protein YP_868814.1 KEGG: son:SO3377 hypothetical protein YP_868815.1 KEGG: son:SO3376 hypothetical protein YP_868816.1 KEGG: son:SO3374.1 hypothetical protein YP_868817.1 KEGG: son:SO3374 hypothetical protein YP_868819.1 PFAM: cytochrome B561; KEGG: son:SO3371 hypothetical cytochrome B561 YP_868820.1 PFAM: YceI family protein; KEGG: son:SO3370 hypothetical protein YP_868821.1 PFAM: Fe(II) trafficking protein YggX; KEGG: son:SO3369 hypothetical protein YP_868822.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: son:SO3368 A/G-specific adenine glycosylase YP_868823.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_868824.1 PFAM: protein of unknown function DUF469; KEGG: son:SO3366 hypothetical protein YP_868825.1 catalyzes the formation of glutamate from glutamine YP_868826.1 KEGG: son:SO3364 hypothetical protein YP_868827.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3363 transcriptional regulator, LysR family YP_868828.1 PFAM: protein of unknown function DUF885; KEGG: son:SO3361 hypothetical protein YP_868829.1 KEGG: son:SO3359 oxygen-independent coproporphyrinogen III oxidase, putative; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_868830.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_868831.1 KEGG: son:SO3357 hypothetical protein YP_868832.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF167; KEGG: son:SO3356 hypothetical protein YP_868833.1 PFAM: protein of unknown function YGGT; KEGG: son:SO3355 hypothetical protein YP_868834.1 TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: son:SO3354 pyrroline-5-carboxylate reductase YP_868835.1 TIGRFAM: Protein of unknown function UPF0001; PFAM: alanine racemase domain protein; KEGG: son:SO3352 conserved hypothetical protein TIGR00044 YP_868836.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: son:SO3351 twitching motility protein PilT YP_868837.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: son:SO3350 twitching motility protein PilU YP_868838.1 PFAM: glutathione peroxidase; KEGG: son:SO3349 glutathione peroxidase, putative YP_868839.1 PFAM: ferrochelatase; KEGG: son:SO3348 ferrochelatase YP_868840.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_868841.1 PFAM: protein of unknown function DUF179; KEGG: son:SO3346 putative transcriptional regulator YP_868842.1 involved in start site selection during the initiation of translation YP_868843.1 KEGG: son:SO3344 hypothetical protein YP_868844.1 KEGG: son:SO3343 hypothetical protein YP_868845.1 PFAM: protein of unknown function UPF0126; KEGG: son:SO3342 hypothetical protein YP_868846.1 PFAM: alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen; Redoxin domain protein; KEGG: son:SO3341 antioxidant, AhpC/TSA family YP_868847.1 PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO3340 hypothetical small-conductance mechanosensitive channel YP_868848.1 PFAM: OmpA/MotB domain protein; KEGG: son:SO3339 OmpA family protein YP_868849.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO3338 L-allo-threonine aldolase YP_868850.1 KEGG: son:SO3337 hypothetical protein YP_868851.1 KEGG: son:SO3336 hypothetical protein YP_868852.1 PFAM: protein of unknown function DUF980; KEGG: son:SO3335 hypothetical protein YP_868853.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3334 GGDEF family protein YP_868854.1 PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO3333 transporter, putative YP_868855.1 KEGG: son:SO3332 transcriptional regulator, CopG family YP_868856.1 KEGG: son:SO3331 hypothetical protein YP_868857.1 KEGG: son:SO3328 acetyltransferase, GNAT family YP_868858.1 KEGG: son:SO3326 hypothetical protein YP_868859.1 KEGG: son:SO3325 NrfJ-related protein YP_868860.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO3324 acetyltransferase, GNAT family YP_868861.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO3323 acetyltransferase, GNAT family YP_868862.1 PFAM: Pirin domain protein domain protein; Cupin 2, conserved barrel domain protein; KEGG: vpa:VPA0042 hypothetical protein YP_868863.1 PFAM: DoxX family protein; KEGG: son:SO3319 hypothetical protein YP_868864.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3318 transcriptional regulator, LysR family YP_868865.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: son:SO3317 5'-nucleotidase, putative YP_868866.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: son:SO3316 hypothetical protein YP_868867.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_868868.1 KEGG: son:SO3314 fimbrial biogenesis and twitching motility protein, putative; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_868869.1 KEGG: son:SO3313 hypothetical protein YP_868870.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_868871.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_868872.1 KEGG: son:SO3310 hypothetical protein YP_868873.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis YP_868874.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_868875.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_868876.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_868877.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_868878.1 KEGG: mba:Mbar_A2621 hypothetical protein YP_868879.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: son:SO3291 cytidine/deoxycytidylate deaminase family protein YP_868880.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function YP_868881.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_868882.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: son:SO3286 cytochrome bd-I oxidase subunit I YP_868883.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: son:SO3285 cytochrome bd-I oxidase subunit II YP_868884.1 TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: vch:VC1842 hypothetical protein YP_868885.1 PFAM: phage integrase family protein; KEGG: rso:RSc2622 probable integrase protein YP_868886.1 PFAM: protein of unknown function DUF1044; KEGG: rru:Rru_A0922 protein of unknown function DUF1044 YP_868887.1 KEGG: rru:Rru_A0921 DNA-binding protein YP_868888.1 TIGRFAM: conserved hypothetical protein; KEGG: vpa:VP1853 putative protein Ymh YP_868889.1 KEGG: eba:ebA6585 hypothetical protein YP_868890.1 KEGG: bur:Bcep18194_A5718 ATPase-like YP_868891.1 PFAM: Integrase, catalytic region; KEGG: pst:PSPTO2841 ISPsy14, transposase YP_868892.1 PFAM: IstB domain protein ATP-binding protein; KEGG: sth:STH2702 transposase subunit YP_868893.1 PFAM: DNA repair protein RadC; KEGG: rso:RSc2620 hypothetical protein YP_868895.1 KEGG: xcc:XCC3133 DNA helicase related protein YP_868897.1 KEGG: neu:NE2517 hypothetical protein YP_868898.1 PFAM: Patatin; KEGG: neu:NE2518 patatin YP_868899.1 PFAM: helix-turn-helix domain protein; KEGG: rso:RSc2610 putative transcription regulator protein YP_868900.1 KEGG: rso:RSc2609 probable lipoprotein YP_868901.1 KEGG: zmo:ZMO1936 hypothetical protein YP_868902.1 KEGG: zmo:ZMO1937 hypothetical protein YP_868903.1 KEGG: rso:RSc2606 hypothetical replication initiator and transcription repressor protein YP_868904.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rso:RSc2605 putative partition protein YP_868905.1 KEGG: rso:RSc2604 hypothetical/unknown protein YP_868906.1 KEGG: rso:RSc2603 hypothetical/unknown protein YP_868907.1 KEGG: rso:RSc2602 probable conjugal transfer TRAF transmembrane protein YP_868908.1 KEGG: rso:RSc2601 hypothetical/unknown protein YP_868909.1 SMART: helix-turn-helix domain protein; KEGG: ilo:IL1607 predicted DNA-binding protein, possible transcriptional regulator YP_868910.1 PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA1808 probable transporter YP_868911.1 PFAM: regulatory protein, LysR; KEGG: rso:RSc2588 probable transcription regulator protein YP_868912.1 KEGG: ppu:PP3180 Smp-30/Cgr1 family protein YP_868913.1 KEGG: ppu:PP3180 Smp-30/Cgr1 family protein YP_868914.1 KEGG: ppu:PP3180 Smp-30/Cgr1 family protein YP_868915.1 PFAM: regulatory proteins, IclR; KEGG: ppr:PBPRB1669 hypothetical transcriptional regulator YP_868916.1 PFAM: protein of unknown function DUF336; KEGG: ppr:PBPRB1668 hypothetical protein YP_868917.1 PFAM: major facilitator superfamily MFS_1; KEGG: cvi:CV0700 probable multidrug/chloramphenicol efflux transporter YP_868918.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rso:RSc2588 probable transcription regulator protein YP_868919.1 KEGG: rso:RSc2587 probable lipoprotein YP_868920.1 type IV secretion VirD4 coupling protein family YP_868921.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: rso:RSc2585 hypothetical/unknown protein YP_868922.1 PFAM: type II secretion system protein E; KEGG: rso:RSc2584 probable conjugal transfer protein TrbB YP_868923.1 PFAM: Conjugal transfer protein TrbC; KEGG: rso:RSc2583 probable conjugal transfer trbC transmembrane protein YP_868924.1 KEGG: rso:RSc2582 probable conjugal transfer trbD transmembrane protein YP_868925.1 type IV secretion system VirB4 family YP_868926.1 KEGG: rso:RSc2580 probable conjugal transfer TrbJ signal peptide protein YP_868927.1 KEGG: rso:RSc2579 probable lipoprotein YP_868928.1 type IV secretion VirB6 family YP_868929.1 PFAM: Conjugal transfer protein; KEGG: rso:RSc2577 probable conjugal transfer trbF transmembrane protein YP_868930.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: rso:RSc2576 probable conjugal transfer lipoprotein TrbG YP_868931.1 PFAM: conjugation TrbI family protein; KEGG: rso:RSc2575 probable conjugal transfer trbi transmembrane protein YP_868932.1 KEGG: rso:RSc2574 hypothetical/unknown protein YP_868933.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3282 methyl-accepting chemotaxis protein YP_868934.1 PFAM: protein of unknown function DUF465; KEGG: son:SO3280 hypothetical protein YP_868935.1 PFAM: acriflavin resistance protein; KEGG: son:SO3279 AcrB/AcrD/AcrF family protein YP_868936.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3278 hypothetical protein YP_868937.1 PFAM: regulatory protein, TetR; KEGG: son:SO3277 transcriptional regulator, TetR family YP_868938.1 KEGG: son:SO3276 hypothetical protein YP_868939.1 KEGG: son:SO3275 hypothetical protein YP_868940.1 KEGG: son:SO3274 hypothetical protein YP_868941.1 KEGG: son:SO3273 hypothetical protein YP_868942.1 KEGG: son:SO3271 polysaccharide biosynthesis protein YP_868943.1 KEGG: son:SO3270 polysaccharide biosynthesis protein YP_868944.1 KEGG: cps:CPS_2097 NeuB protein YP_868945.1 KEGG: mpa:MAP3160 hypothetical protein YP_868946.1 KEGG: son:SO3267 hypothetical protein YP_868947.1 KEGG: ccr:CC2858 hypothetical protein YP_868948.1 PFAM: GCN5-related N-acetyltransferase; KEGG: par:Psyc_0657 probable polysaccharide biosynthesis protein YP_868949.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: mhu:Mhun_3094 acylneuraminate cytidylyltransferase YP_868950.1 KEGG: son:SO3260 hypothetical protein YP_868951.1 KEGG: son:SO3259 hypothetical protein YP_868953.1 KEGG: son:SO3258 hypothetical protein YP_868954.1 KEGG: son:SO3257 hypothetical protein YP_868955.1 PFAM: protein of unknown function DUF400; KEGG: son:SO3256 hypothetical protein YP_868956.1 PFAM: FlgN family protein; KEGG: son:SO3255 flagellar biosynthetic protein FlgN YP_868957.1 PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: son:SO3254 negative regulator of flagellin synthesis FlgM YP_868958.1 required for the assembly of the flagellar basal body P-ring YP_868959.1 SMART: response regulator receiver; CheW domain protein; KEGG: son:SO3252 chemotaxis protein CheV YP_868960.1 SMART: MCP methyltransferase, CheR-type; KEGG: son:SO3251 chemotaxis protein methyltransferase CheR YP_868961.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_868962.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_868963.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production YP_868964.1 the hook connects flagellar basal body to the flagellar filament YP_868965.2 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod YP_868966.1 makes up the distal portion of the flagellar basal body rod YP_868967.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod YP_868968.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_868969.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space YP_868970.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: son:SO3239.3 hypothetical flagellar hook-associated protein YP_868971.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes. YP_868972.1 PFAM: flagellin domain protein; KEGG: son:SO3238 flagellin YP_868973.1 PFAM: flagellin domain protein; KEGG: son:SO3237 flagellin YP_868974.1 PFAM: flagellar protein FlaG protein; KEGG: son:SO3236 flagellin FlaG YP_868975.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: son:SO3235 flagellar hook-associated protein FliD YP_868976.1 KEGG: son:SO3234 hypothetical protein YP_868977.1 flagellin specific chaperone YP_868978.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; flagellar regulatory FleQ domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO3232 flagellar regulatory protein A YP_868979.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: son:SO3231 flagellar regulatory protein B YP_868980.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: son:SO3230 flagellar regulatory protein C YP_868981.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: son:SO3229 flagellar hook-basal body complex protein FliE YP_868982.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_868983.1 One of three proteins involved in switching the direction of the flagellar rotation YP_868984.1 binds to and inhibits the function of flagella specific ATPase FliI YP_868985.1 involved in type III protein export during flagellum assembly YP_868986.1 TIGRFAM: flagellar export protein FliJ; KEGG: son:SO3224 flagellar protein FliJ YP_868987.1 PFAM: flagellar hook-length control protein; KEGG: son:SO3223 flagellar hook-length control protein FliK YP_868988.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring YP_868989.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation YP_868990.1 One of three proteins involved in switching the direction of the flagellar rotation YP_868991.1 PFAM: flagellar biosynthesis protein, FliO; KEGG: son:SO3219 flagellar protein FliO YP_868992.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_868993.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: son:SO3217 flagellar biosynthetic protein FliQ YP_868994.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus YP_868995.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_868996.1 membrane protein involved in the flagellar export apparatus YP_868997.1 positive regulator of class III flagellar genes YP_868998.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO3211 flagellar biosynthetic protein FlhG YP_868999.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes YP_869000.1 PFAM: response regulator receiver; KEGG: son:SO3209 chemotaxis protein CheY YP_869001.1 PFAM: Chemotaxis phosphatase, CheZ; KEGG: son:SO3208 chemotaxis protein CheZ YP_869002.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: son:SO3207 chemotaxis protein YP_869003.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_869004.1 KEGG: son:SO3205 hypothetical protein YP_869005.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO3204 ParA family protein YP_869006.1 PFAM: CheW domain protein; KEGG: son:SO3203 CheW domain protein YP_869007.1 PFAM: CheW domain protein; KEGG: son:SO3202 purine-binding chemotaxis protein CheW YP_869008.1 KEGG: son:SO3200 hypothetical protein YP_869009.1 KEGG: son:SO3199 FlhB domain protein YP_869010.1 KEGG: son:SO3198 hypothetical protein YP_869011.1 PFAM: VacJ family lipoprotein; KEGG: son:SO3197 vacJ lipoprotein, putative YP_869012.1 PFAM: response regulator receiver; KEGG: son:SO3196 response regulator YP_869013.1 TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: ppr:PBPRA2644 putative dipeptide/Tripeptide permease YP_869014.1 KEGG: son:SO3194 transcriptional activator rfaH, putative; TIGRFAM: transcriptional activator RfaH; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein YP_869015.1 PFAM: polysaccharide export protein; KEGG: son:SO3193 polysaccharide biosynthesis protein YP_869016.1 PFAM: lipopolysaccharide biosynthesis; KEGG: son:SO3191 chain length determinant protein YP_869017.1 PFAM: sugar transferase; KEGG: ava:Ava_1046 sugar transferase YP_869018.1 PFAM: glycosyl transferase, family 2; KEGG: pca:Pcar_1796 teichuronic acid biosynthesis YP_869019.1 NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose YP_869020.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: vfi:VF0167 Glucose-1-phosphate thymidylyltransferase YP_869021.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: dps:DP2222 probable dTDP-4-rhamnose reductase YP_869022.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: vvy:VV0303 dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase YP_869023.1 KEGG: vpa:VP0228 putative integral membrane protein YP_869026.1 PFAM: glycosyl transferase, family 11; KEGG: pmm:PMM0353 glycosyl transferase family 11 YP_869027.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: vpa:VP0236 nucleotide sugar dehydrogenase YP_869028.1 PFAM: protein of unknown function DUF886; KEGG: son:SO3164 hypothetical protein YP_869029.1 KEGG: son:SO3163 lipoprotein YP_869030.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; KEGG: son:SO3162 sensor histidine kinase YP_869031.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: eba:ebA2277 glucose-1-phosphate thymidylyltransferase YP_869032.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: son:SO3160 dTDP-4-dehydrorhamnose 3,5-epimerase YP_869033.1 PFAM: protein of unknown function DUF940, membrane lipoprotein putative; KEGG: son:SO3159 hypothetical protein YP_869034.1 PFAM: protein of unknown function DUF1017; KEGG: son:SO3158 polysaccharide synthesis-related protein YP_869035.1 KEGG: son:SO3157 lipoprotein, putative YP_869036.1 KEGG: son:SO3156.1 hypothetical protein YP_869037.1 PFAM: Patatin; KEGG: son:SO3155 hypothetical protein YP_869038.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_869039.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: son:SO3152 acetyltransferase, CysE/LacA/LpxA/NodL family YP_869040.1 PFAM: protein of unknown function UPF0066; KEGG: son:SO3151 hypothetical protein YP_869041.1 KEGG: son:SO3150 lipoprotein, putative YP_869042.1 KEGG: son:SO3149 hypothetical protein YP_869043.1 PFAM: amidohydrolase; KEGG: ilo:IL1717 secreted enzyme, contains two amidohydrolase related domains YP_869044.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: son:SO3146 DNA-binding protein, H-NS family YP_869045.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: son:SO3145 electron transfer flavoprotein, beta subunit YP_869046.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: son:SO3144 electron transfer flavoprotein, alpha subunit YP_869047.1 PFAM: Na+/H+ antiporter NhaC; KEGG: vfi:VF1630 Na(+)/H(+) antiporter YP_869048.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO3142 peptidyl-dipeptidase Dcp YP_869049.1 KEGG: son:SO3140.2 hypothetical protein YP_869050.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_869051.1 KEGG: psb:Psyr_3925 hypothetical protein YP_869052.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO3138 C4-dicarboxylate transport transcriptional regulatory protein YP_869053.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO3136.1 hypothetical two-component sensor histidine kinase protein YP_869054.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: son:SO3136 C4-dicarboxylate transport protein YP_869055.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: son:SO3135 C4-dicarboxylate transporter, putative YP_869056.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: son:SO3134 C4-dicarboxylate-binding periplasmic protein YP_869057.1 KEGG: son:SO3132 hypothetical protein YP_869058.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_869059.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3128 ABC transporter, ATP-binding/permease protein, putative YP_869060.1 PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; KEGG: son:SO3127 Ada regulatory protein, putative YP_869061.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: son:SO3126 methylated-DNA--protein-cysteine methyltransferase YP_869062.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO3125 ATP-dependent RNA helicase, DEAD box family YP_869063.1 PFAM: Dual specificity protein phosphatase; KEGG: son:SO3124 tyrosine-specific protein phosphatase, putative YP_869064.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: vvy:VV1159 hypothetical protein YP_869065.1 PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO3123 chemotaxis protein CheV YP_869066.1 involved in the import of serine and threonine coupled with the import of sodium YP_869067.1 KEGG: son:SO3121 hypothetical protein YP_869068.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: oxidoreductase domain protein; KEGG: son:SO3120 oxidoreductase, Gfo/Idh/MocA family YP_869069.1 KEGG: son:SO3119 hypothetical protein YP_869070.1 PFAM: pseudouridine synthase; KEGG: hch:HCH_04661 pseudouridylate synthases, 23S RNA-specific YP_869071.1 PFAM: Redoxin domain protein; KEGG: son:SO3117 thioredoxin, putative YP_869072.1 KEGG: son:SO3116 hypothetical protein YP_869073.1 KEGG: son:SO3115 hypothetical protein YP_869074.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_869075.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_869076.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: son:SO3112 preprotein translocase, YajC subunit YP_869077.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_869078.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_869079.1 KEGG: son:SO3109 hypothetical protein YP_869080.1 PFAM: Rhodanese domain protein; KEGG: cya:CYA_1705 rhodanese domain protein YP_869081.1 TIGRFAM: siroheme synthase; KEGG: son:SO3108 precorrin-2 oxidase/ferrochelatase YP_869082.1 PFAM: YaeQ family protein; KEGG: son:SO3107 hypothetical protein YP_869083.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Proprotein convertase, P; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9, subtilisin propeptide; KEGG: son:SO3106 cold-active serine alkaline protease YP_869084.1 PFAM: Rhodanese domain protein; KEGG: son:SO3105 phage shock protein E YP_869085.1 KEGG: son:SO3104 hypothetical protein YP_869086.1 PFAM: acriflavin resistance protein; KEGG: son:SO3103 AcrB/AcrD/AcrF family protein YP_869087.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3102 AcrA/AcrE family protein YP_869088.1 PFAM: protein of unknown function DUF541; KEGG: son:SO3101 hypothetical protein YP_869089.1 KEGG: son:SO3100 hypothetical protein YP_869090.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: son:SO3099 long-chain fatty acid transport protein, putative YP_869091.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: bha:BH0660 sodium/proline symporter YP_869092.1 KEGG: son:SO3097 hypothetical protein YP_869093.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_869094.1 KEGG: son:SO3095 hypothetical protein YP_869095.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: von Willebrand factor, type A; Tetratricopeptide domain protein; KEGG: son:SO3094 TPR domain protein YP_869096.1 PFAM: von Willebrand factor, type A; KEGG: son:SO3093 von Willebrand factor type A domain protein YP_869097.1 KEGG: son:SO3092 hypothetical protein YP_869098.1 PFAM: protein of unknown function DUF58; KEGG: son:SO3091 hypothetical protein YP_869099.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: son:SO3090 MoxR domain protein YP_869100.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth YP_869101.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate YP_869102.1 KEGG: son:SO3087 hypothetical protein YP_869103.1 KEGG: son:SO3085 hypothetical protein YP_869104.1 KEGG: son:SO3084 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_869105.1 PFAM: peptidase M16 domain protein; KEGG: son:SO3083 peptidase, M16 family YP_869106.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: son:SO3082 phosphohistidine phosphatase SixA YP_869107.1 PFAM: Smr protein/MutS2; KEGG: son:SO3081 Smr domain protein YP_869108.1 involved in methylation of ribosomal protein L3 YP_869109.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_869110.1 PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: son:SO3078 major facilitator family protein, putative YP_869111.1 PFAM: ATP-NAD/AcoX kinase; KEGG: son:SO3077 hypothetical protein YP_869112.1 KEGG: son:SO3076 hypothetical protein YP_869113.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO3075 RNA methyltransferase, TrmH family, putative YP_869114.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO3073 hypothetical protein YP_869115.1 PFAM: beta-ketoacyl synthase; KEGG: son:SO3072 3-oxoacyl-(acyl-carrier-protein) synthase I YP_869116.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO3071 erythronate-4-phosphate dehydrogenase YP_869117.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; KEGG: son:SO3070 aspartate semialdehyde dehydrogenese YP_869118.1 KEGG: son:SO3069 putative membrane protein YP_869119.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_869120.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO3067 FolC bifunctional protein YP_869121.1 PFAM: Sporulation domain protein; KEGG: son:SO3066 DedD protein YP_869122.1 PFAM: Colicin V production protein; KEGG: son:SO3065 colicin V production protein YP_869123.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_869124.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: son:SO3063 sodium:alanine symporter family protein YP_869125.1 KEGG: son:SO3062 hypothetical protein YP_869126.1 decatenates replicating daughter chromosomes YP_869127.1 PFAM: porin, Gram-negative type; KEGG: son:SO3060 outer membrane porin, putative YP_869128.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO3059 formate hydrogenlyase transcriptional activator, putative YP_869129.1 TIGRFAM: flavocytochrome c; PFAM: monooxygenase, FAD-binding; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: son:SO3058 flavocytochrome c flavin subunit, putative YP_869130.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO3057 Pal/histidase family protein YP_869131.1 KEGG: son:SO3056 tetraheme cytochrome c YP_869132.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO3055 proline iminopeptidase YP_869133.1 PFAM: beta-lactamase domain protein; KEGG: son:SO3054 metallo-beta-lactamase family protein YP_869134.1 PFAM: protein of unknown function DUF182; KEGG: son:SO3051 hypothetical xanthine dehydrogenase accessory factor YP_869135.1 KEGG: son:SO3050 hypothetical protein YP_869136.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: son:SO3049 isoquinoline 1-oxidoreductase, alpha subunit, putative YP_869137.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: son:SO3048 isoquinoline 1-oxidoreductase, beta subunit, putative YP_869138.1 PFAM: protein of unknown function DUF1097; KEGG: son:SO3047 hypothetical protein YP_869139.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: vpa:VPA0842 methyl-accepting chemotaxis protein YP_869140.1 KEGG: son:SO3045 hypothetical protein YP_869141.1 PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA3191 putative acetyltransferase YP_869142.1 KEGG: reu:Reut_B4688 hypothetical protein YP_869143.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction YP_869144.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_869145.1 Involved in cell division; probably involved in intracellular septation YP_869146.1 PFAM: ferric iron reductase; KEGG: son:SO3034 ferric iron reductase protein, putative YP_869147.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO3033 ferric alcaligin siderophore receptor YP_869148.1 PFAM: IucA/IucC family protein; KEGG: son:SO3032 siderophore biosynthesis protein, putative YP_869149.1 KEGG: son:SO3031 siderophore biosynthesis protein, putative YP_869150.1 KEGG: son:SO3030 siderophore biosynthesis protein YP_869151.1 KEGG: son:SO3029 hypothetical protein YP_869152.1 KEGG: son:SO3027 hypothetical protein YP_869153.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ppr:PBPRB1825 hypothetical receptor YP_869154.1 PFAM: putative esterase; KEGG: son:SO3025 hypothetical protein YP_869155.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_869156.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_869157.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate YP_869158.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_869159.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_869160.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_869161.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: son:SO3017 TrpH family protein YP_869162.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain protein; KEGG: son:SO3016 Sua5/YciO/YrdC/YwlC family protein YP_869163.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: son:SO3015 putative segregation and condensation protein A YP_869164.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: son:SO3014 putative segregation and condensation protein B YP_869165.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: eca:ECA2291 putative RNA pseudouridylate synthase YP_869166.1 KEGG: son:SO2936 hypothetical protein YP_869167.1 PFAM: transposase IS200-family protein; KEGG: vch:VCA0275 IS1004 transposase YP_869168.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO2935 short chain dehydrogenase YP_869169.1 KEGG: son:SO2934 hypothetical protein YP_869170.1 SohB; periplasmic protein; member of the peptidase S49 family YP_869171.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: son:SO2932 transcriptional regulator, AraC family YP_869172.1 KEGG: son:SO2931 hypothetical protein YP_869173.1 KEGG: son:SO2930 hypothetical protein YP_869174.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: ade:Adeh_2257 hypothetical protein YP_869175.1 KEGG: atc:AGR_C_4582 virulence gene acvB product YP_869176.1 KEGG: son:SO2929 hypothetical protein YP_869177.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: son:SO2928 acyl-CoA thioesterase I, putative YP_869178.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO2927 ABC transporter, ATP-binding protein YP_869179.1 PFAM: protein of unknown function DUF214; KEGG: son:SO2926 ABC transporter, permease, putative YP_869180.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: son:SO2924 signal peptidase I family protein YP_869181.1 PFAM: sodium/glutamate symporter; KEGG: son:SO2923 sodium/glutamate symporter YP_869182.1 TIGRFAM: conserved hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: son:SO2922 hypothetical protein YP_869183.1 catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate YP_869184.1 PFAM: protein of unknown function UPF0118; KEGG: son:SO2920 hypothetical protein YP_869185.1 PFAM: conserved hypothetical protein 95; KEGG: son:SO2919 hypothetical protein YP_869186.1 KEGG: son:SO4126 hypothetical protein YP_869187.1 KEGG: son:SO2918 hypothetical protein YP_869188.1 KEGG: son:SO2917 hypothetical protein YP_869189.1 KEGG: dde:Dde_2987 transposase YP_869190.1 PFAM: Integrase, catalytic region; KEGG: par:Psyc_0937 putative transposase OrfB YP_869191.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate YP_869192.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_869193.1 PFAM: protein of unknown function DUF412; KEGG: son:SO2914 hypothetical protein YP_869194.1 activates pyruvate formate-lyase 1 under anaerobic conditions YP_869195.1 TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: son:SO2912 formate acetyltransferase YP_869196.1 PFAM: formate/nitrite transporter; KEGG: son:SO2911 formate transporter, putative YP_869197.1 PFAM: C4-dicarboxylate anaerobic carrier; Na+/H+ antiporter NhaC; KEGG: vpa:VPA1014 putative S-transferase YP_869198.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2907 TonB-dependent receptor domain protein YP_869199.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: son:SO2906 hypothetical protein YP_869200.1 PFAM: O-methyltransferase, family 2; Methyltransferase type 12; KEGG: son:SO2905 O-methyltransferase, putative YP_869201.1 TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: son:SO2903 cysteine synthase A YP_869202.1 PFAM: RDD domain containing protein; KEGG: son:SO2902 hypothetical protein YP_869203.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_869204.1 KEGG: pfo:Pfl_1677 hypothetical protein YP_869205.1 KEGG: son:SO2900 hypothetical protein YP_869206.1 putative role in sulfur assimilation YP_869207.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: son:SO2898 SMC family protein YP_869208.1 TIGRFAM: cell division protein ZipA; PFAM: ZipA, C-terminal FtsZ-binding region; KEGG: son:SO2897 cell division protein ZipA YP_869209.1 KEGG: son:SO2896 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; NAD-dependent DNA ligase; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; SMART: Helix-hairpin-helix DNA-binding, class 1 YP_869210.1 KEGG: son:SO2863 hypothetical protein YP_869211.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: son:SO2862 HDIG domain protein YP_869212.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: son:SO2861 hypothetical protein YP_869213.1 PFAM: DSBA oxidoreductase; KEGG: son:SO2860 thiol:disulfide interchange protein, DsbA family YP_869214.1 KEGG: son:SO2858 hypothetical protein YP_869215.1 PFAM: Na+/solute symporter; KEGG: son:SO2857 sodium/solute symporter family protein YP_869216.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: son:SO2856 CBS domain protein YP_869217.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: son:SO2855 exonuclease YP_869218.1 PFAM: regulatory protein, MarR; KEGG: ppr:PBPRB1157 putative transcriptional regulator, MarR family YP_869219.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: ppr:PBPRB1158 hypothetical alcohol dehydrogenase, zinc-containing YP_869220.1 KEGG: son:SO2854 hypothetical protein YP_869221.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis YP_869222.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: son:SO2852 transcriptional regulator, GntR family YP_869223.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate YP_869224.1 KEGG: son:SO3571 hypothetical protein YP_869225.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate YP_869226.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO3564 peptidyl-dipeptidase Dcp YP_869227.1 SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO3563 SM-20 domain protein YP_869228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2850 acetyltransferase, GNAT family YP_869229.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2849 acetyltransferase, GNAT family YP_869230.1 KEGG: son:SO2848 hypothetical protein YP_869232.1 KEGG: son:SO1840 hypothetical protein YP_869233.1 KEGG: son:SO1842 hypothetical protein YP_869234.1 KEGG: son:SO1843 hypothetical protein YP_869235.1 PFAM: PKD domain containing protein; Endonuclease/exonuclease/phosphatase; KEGG: son:SO1844 extracellular nuclease, putative YP_869236.1 KEGG: son:SO1845 hypothetical protein YP_869237.1 KEGG: son:SO1846 hypothetical protein YP_869238.1 KEGG: son:SO1848 hypothetical protein YP_869239.1 KEGG: son:SO1849 hypothetical protein YP_869240.1 PFAM: heat shock protein DnaJ domain protein; KEGG: son:SO1850 DnaJ domain protein YP_869241.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA YP_869242.1 PFAM: glutaredoxin; glutaredoxin 2; KEGG: son:SO1852 hypothetical protein YP_869243.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth YP_869244.1 KEGG: son:SO1854 hypothetical protein YP_869245.1 PFAM: ribosome modulation factor; KEGG: son:SO1855 ribosome modulation factor YP_869246.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_869247.1 KEGG: son:SO1857 hypothetical ATP-dependent protease YP_869248.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system YP_869249.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_869250.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: son:SO1862 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_869252.1 KEGG: sde:Sde_0798 hypothetical protein YP_869253.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: pha:PSHAa2649 serine protease precursor YP_869254.1 PFAM: histone family protein DNA-binding protein; KEGG: son:SO1863 DNA-binding protein, HU family YP_869257.1 PFAM: Sigma-70, region 4 type 2; KEGG: vfi:VF2498 DNA-directed RNA polymerase specialized sigma subunit YP_869258.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: vvu:VV11095 serine/threonine protein kinase YP_869259.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1865 ABC transporter, ATP-binding protein YP_869260.1 KEGG: son:SO1866 hypothetical protein YP_869261.1 PFAM: protein of unknown function DUF480; KEGG: son:SO1867 hypothetical protein YP_869262.1 KEGG: son:SO1868 hypothetical protein YP_869263.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis YP_869264.1 PFAM: S-adenosylmethionine decarboxylase; KEGG: son:SO1871 S-adenosylmethionine decarboxylase proenzyme, putative YP_869265.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate YP_869266.1 PFAM: protein of unknown function DUF188; KEGG: son:SO2894 YaiI/YqxD family protein YP_869267.1 PFAM: YceI family protein; KEGG: son:SO2893 hypothetical protein YP_869268.1 KEGG: son:SO2891 hypothetical protein YP_869269.1 KEGG: son:SO2890 hypothetical protein YP_869270.1 PFAM: protein of unknown function DUF785; KEGG: ppr:PBPRB0931 hypothetical protein YP_869271.1 KEGG: son:SO2889 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein YP_869272.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein YP_869273.1 involved in regulation of intracellular pH under alkaline conditions YP_869274.1 Multifunctional regulator of fatty acid metabolism YP_869275.1 PFAM: SpoVR family protein; KEGG: son:SO2884 hypothetical protein YP_869276.1 PFAM: protein of unknown function DUF444; KEGG: son:SO2883 hypothetical protein YP_869277.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: son:SO2882 hypothetical Ser protein kinas YP_869278.1 PFAM: manganese and iron superoxide dismutase; KEGG: son:SO2881 superoxide dismutase, Fe YP_869279.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: son:SO2880 glutaredoxin domain protein YP_869280.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: son:SO2879 uracil permease YP_869281.1 KEGG: son:SO2878 hypothetical protein YP_869282.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP YP_869283.1 KEGG: dde:Dde_2987 transposase YP_869284.1 PFAM: Integrase, catalytic region; KEGG: par:Psyc_0937 putative transposase OrfB YP_869285.1 KEGG: son:SO2876 hypothetical protein YP_869286.1 KEGG: son:SO2872 hypothetical protein YP_869287.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: son:SO2871 arsenate reductase, putative YP_869288.1 PFAM: peptidase M48, Ste24p; Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO2869 hypothetical protein YP_869289.1 PFAM: SirA family protein; KEGG: son:SO2868 hypothetical protein YP_869290.1 PFAM: protein of unknown function UPF0118; KEGG: son:SO2867 permease PerM, putative YP_869291.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_869292.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO2865 L-lysine exporter, putative YP_869293.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine YP_869294.1 KEGG: son:SO1878 glycine cleavage system transcriptional repressor, putative YP_869295.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_869296.1 PFAM: NlpBDapX family lipoprotein; KEGG: son:SO1880 lipoprotein-34 NlpB YP_869297.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO1881 HlyD family-related protein YP_869298.1 PFAM: acriflavin resistance protein; KEGG: son:SO1882 AcrB/AcrD/AcrF family protein YP_869299.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1883 acetyltransferase, GNAT family YP_869300.1 PFAM: Negative transcriptional regulator; KEGG: dra:DR1683 transcriptional regulator, putative YP_869301.1 PFAM: protein of unknown function DUF81; KEGG: son:SO1884 membrane protein, putative YP_869302.1 KEGG: son:SO1886 hypothetical protein YP_869303.1 PFAM: ThiJ/PfpI domain protein; KEGG: son:SO1887 hypothetical protein YP_869305.1 TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; KEGG: son:SO1891 3-oxoacid CoA-transferase subunit B YP_869306.1 TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; KEGG: son:SO1892 acetate CoA-transferase, subunit A YP_869307.1 PFAM: pyruvate carboxyltransferase; KEGG: son:SO1893 hydroxymethylglutaryl-CoA lyase YP_869308.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO1894 3-methylcrotonyl-CoA carboxylase alpha subunit YP_869309.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO1895 enoyl-CoA hydratase YP_869310.1 PFAM: carboxyl transferase; KEGG: son:SO1896 3-methylcrotonyl-CoA carboxylase beta subunit YP_869311.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO1897 isovaleryl-CoA dehydrogenase YP_869312.1 PFAM: regulatory protein, MerR; KEGG: son:SO1898 transcriptional regulator, putative YP_869313.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO1899 hypothetical protein YP_869314.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mag:amb2304 acyl-coenzyme A synthetase/AMP-(fatty) acid ligase YP_869315.1 PFAM: small multidrug resistance protein; KEGG: son:SO1901 sugE protein YP_869316.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_869317.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Proprotein convertase, P; KEGG: vpa:VPA1071 putative extracellular serine protease YP_869319.1 KEGG: son:SO1903 hypothetical protein YP_869321.1 KEGG: ilo:IL1490 hypothetical protein YP_869322.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1907 transcriptional regulator, LysR family YP_869323.1 KEGG: son:SO1908 hypothetical protein YP_869324.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: son:SO1909 hypothetical protein YP_869325.1 TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: son:SO1910 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_869326.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO1911 oxidoreductase, short chain dehydrogenase/reductase family YP_869327.1 TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; KEGG: son:SO1912 acyl-CoA thioesterase II YP_869328.1 KEGG: son:SO1913 hypothetical protein YP_869329.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9, subtilisin propeptide; KEGG: son:SO1915 serine protease, subtilase family YP_869330.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1916 transcriptional regulator, LysR family YP_869331.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO1917 multidrug resistance protein, putative YP_869332.1 KEGG: pca:Pcar_1086 conserved hypothetical signal peptide protein YP_869333.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfl:PFL_2420 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_869334.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: sme:SMc01911 hypothetical protein YP_869335.1 KEGG: rso:RSc0630 hypothetical protein YP_869336.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: rfr:Rfer_2441 carboxymuconolactone decarboxylase YP_869337.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; KEGG: rso:RSc0625 probable transcription regulator protein YP_869338.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO1918 MATE efflux family protein YP_869339.1 KEGG: son:SO1921 hypothetical protein YP_869340.1 PFAM: Uncharacterized conserved protein UCP029143; KEGG: son:SO1922 hypothetical protein YP_869341.1 PFAM: acriflavin resistance protein; KEGG: son:SO1923 AcrB/AcrD/AcrF family protein YP_869342.1 PFAM: acriflavin resistance protein; KEGG: son:SO1924 AcrB/AcrD/AcrF family protein YP_869343.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO1925 HlyD family secretion protein YP_869344.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH YP_869345.1 PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: son:SO1927 succinate dehydrogenase, cytochrome b556 subunit YP_869346.1 KEGG: son:SO1927.1 hypothetical succinate dehydrogenase, hydrophobic subunit YP_869347.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_869348.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_869349.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_869350.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: son:SO1931 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) YP_869351.1 catalyzes the interconversion of succinyl-CoA and succinate YP_869352.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: son:SO1933 succinyl-CoA synthetase alpha chain YP_869353.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: son:SO1935 regulator of nucleoside diphosphate kinase YP_869354.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1936 acetyltransferase, GNAT family YP_869355.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer YP_869356.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_869357.1 KEGG: son:SO1939 hypothetical protein YP_869358.1 KEGG: son:SO1940 hypothetical protein YP_869359.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein, CorA family protein; KEGG: son:SO1941 magnesium and cobalt transport protein CorA YP_869360.1 KEGG: son:SO1942 HDIG domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_869361.1 SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO1944 hypothetical protein YP_869362.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO1945 sensor protein PhoQ YP_869363.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO1946 transcriptional regulatory protein PhoP YP_869364.1 KEGG: son:SO1947 hypothetical protein YP_869365.1 PFAM: sodium:dicarboxylate symporter; KEGG: son:SO1948 sodium:dicarboxylate symporter family protein YP_869366.1 PFAM: Ig domain protein, group 1 domain protein; KEGG: son:SO1949 invasin domain protein YP_869367.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation YP_869368.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_869369.1 KEGG: son:SO2650 hypothetical protein YP_869370.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation YP_869371.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: son:SO2648 DNA-binding response regulator, LuxR family YP_869372.1 PFAM: thioesterase superfamily protein; KEGG: son:SO2647 cytosolic long-chain acyl-CoA thioester hydrolase family protein YP_869373.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate YP_869374.1 PFAM: protein of unknown function DUF299; KEGG: son:SO2645 hypothetical protein YP_869375.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_869376.1 PFAM: FAD linked oxidase domain protein; KEGG: son:SO2643 oxidoreductase, FAD-binding, putative YP_869377.1 KEGG: son:SO2642 hypothetical protein YP_869378.1 PFAM: regulatory protein, MarR; KEGG: son:SO2640 transcriptional regulator, MarR family YP_869379.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: sco:SCO0432 probable secreted peptidase YP_869380.1 KEGG: son:SO2639 hypothetical protein YP_869381.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: son:SO2638 leucine dehydrogenase YP_869382.1 KEGG: son:SO2637 hypothetical protein YP_869383.1 PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: son:SO2636 hypothetical protein YP_869384.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_869385.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis YP_869386.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_869387.1 PFAM: NUDIX hydrolase; KEGG: son:SO2631 MutT/nudix family protein YP_869388.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: pseudouridine synthase; KEGG: cps:CPS_2898 ribosomal large subunit pseudouridine synthase E YP_869389.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; KEGG: son:SO2629 isocitrate dehydrogenase, NADP-dependent YP_869391.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_869392.1 KEGG: son:SO2626 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase YP_869393.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_869394.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_869395.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_869396.1 PFAM: 17 kDa surface antigen; KEGG: son:SO2622 hypothetical protein YP_869397.1 PFAM: protein of unknown function DUF34; KEGG: son:SO2621 conserved hypothetical protein TIGR00486 YP_869398.1 KEGG: son:SO2620 hypothetical protein YP_869399.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_869400.1 KEGG: son:SO2618 ATP-binding protein, Mrp/Nbp35 family YP_869401.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_869402.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_869403.1 KEGG: son:SO2615 4-amino-4-deoxychorismate lyase YP_869404.1 TIGRFAM: Aminodeoxychorismate lyase; KEGG: son:SO2614 conserved hypothetical protein TIGR00247 YP_869405.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_869406.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: son:SO2612 DNA polymerase III, delta prime subunit YP_869407.1 KEGG: son:SO2611 type IV pilus biogenesis protein pilZ YP_869408.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: son:SO2610 hydrolase, TatD family YP_869409.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA YP_869410.1 PFAM: nucleoside recognition domain protein; KEGG: son:SO2607 spore maturation protein A-related protein YP_869411.1 PFAM: Mammalian cell entry related domain protein; KEGG: son:SO2606 PqiB family protein YP_869412.1 PFAM: Paraquat-inducible protein A; KEGG: ppr:PBPRA1925 hypothetical uncharacterized paraquat-inducible protein A YP_869413.1 PFAM: Paraquat-inducible protein A; KEGG: son:SO2604.1 hypothetical protein YP_869414.1 PFAM: YebG family protein; KEGG: son:SO2604 hypothetical protein YP_869415.1 PFAM: GAF domain protein; KEGG: son:SO2603 GAF domain-containing protein YP_869416.1 affects solute and DNA transport through an unknown mechanism YP_869417.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 YP_869418.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO2600 aminopeptidase N YP_869419.1 KEGG: son:SO2598 hypothetical protein YP_869420.1 PFAM: protein of unknown function DUF1302; KEGG: son:SO2597 hypothetical protein YP_869421.1 PFAM: protein of unknown function DUF1329; KEGG: son:SO2596 hypothetical protein YP_869422.1 KEGG: son:SO2595 BNR repeat protein YP_869423.1 KEGG: son:SO2594 hypothetical protein YP_869424.1 PFAM: NAD-glutamate dehydrogenase; KEGG: son:SO2593 hypothetical protein YP_869425.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_869426.1 PFAM: protein of unknown function DUF1379; KEGG: son:SO2591 hypothetical protein YP_869427.1 PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: son:SO2136 aldehyde-alcohol dehydrogenase YP_869428.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO2137 multiple antibiotic resistance protein YP_869429.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: cps:CPS_1937 methyl-accepting chemotaxis protein YP_869430.1 PFAM: phage integrase family protein; KEGG: vvy:VV2262 phage integrase YP_869431.1 PFAM: protein of unknown function DUF86; KEGG: son:SO1440 hypothetical protein YP_869432.1 KEGG: son:SO1441 hypothetical protein YP_869433.1 KEGG: son:SO1442 hypothetical protein YP_869434.1 KEGG: son:SO1443 hypothetical protein YP_869435.1 PFAM: plasmid stabilization system; KEGG: son:SO1444 hypothetical protein YP_869436.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: son:SO1445 transcriptional regulator, CopG family YP_869437.1 KEGG: son:SO1447 retinol acyltransferase domain protein YP_869438.1 PFAM: phage integrase family protein; KEGG: son:SO1448 site-specific recombinase, phage integrase family YP_869439.1 KEGG: son:SO1450 hypothetical protein YP_869440.1 KEGG: son:SO1451 hypothetical protein YP_869441.1 PFAM: YagBYeeUYfjZ family protein; KEGG: son:SO1453 hypothetical protein YP_869442.1 KEGG: son:SO1454 hypothetical protein YP_869443.1 PFAM: DNA repair protein RadC; KEGG: vfi:VFA0522 DNA repair protein RadC YP_869444.1 PFAM: regulatory protein, MerR; KEGG: vfi:VF0782 transcriptional regulator, MerR family YP_869445.1 PFAM: Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: ana:alr4412 unknown protein YP_869446.1 KEGG: xla:379653 hypothetical protein MGC68953 Pfam: VIT VWA GBP_C PROSITE: LIPOYL HEMOPEXIN VWFA YP_869447.1 KEGG: sec:SC0010 positive regulator for sigma H (sigma 32) promoters, permitting growth at high temperature YP_869449.1 KEGG: son:SO1455 DNA repair protein, RadC family YP_869450.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: hch:HCH_05030 sigma 54-dependent transcriptional activator YP_869451.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: bth:BT0335 putative ATPase YP_869452.1 SMART: von Willebrand factor, type A; KEGG: yps:YPTB0004 hypothetical protein YP_869453.1 KEGG: noc:Noc_0407 hypothetical protein YP_869455.1 KEGG: sde:Sde_2759 hypothetical protein YP_869456.1 KEGG: mta:Moth_2243 hypothetical protein YP_869457.1 KEGG: sde:Sde_2757 hypothetical protein YP_869458.1 KEGG: sde:Sde_2756 hypothetical protein YP_869459.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: eca:ECA3659 hypothetical protein YP_869460.1 KEGG: sde:Sde_2753 hypothetical protein YP_869461.1 PFAM: Zeta toxin family protein; KEGG: pha:PSHAa0327 hypothetical protein YP_869464.1 KEGG: pha:PSHAa2986 ATP-binding protein YP_869468.1 KEGG: dps:DP1989 hypothetical protein YP_869469.1 KEGG: nar:Saro_0348 hypothetical protein YP_869470.1 KEGG: hch:HCH_04712 diadenosine tetraphosphatase and related serine/threonine protein phosphatase YP_869471.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: son:SOA0012 umuC protein YP_869472.1 PFAM: peptidase S24, S26A and S26B; KEGG: son:SOA0013 umuD protein YP_869473.1 PFAM: protein of unknown function DUF938; KEGG: son:SO2050 hypothetical protein YP_869474.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO2052 hypothetical oxidoreductase YP_869475.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2053 transcriptional regulator, LysR family YP_869476.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO2054 alcohol dehydrogenase class III YP_869477.1 PFAM: putative esterase; KEGG: son:SO2055 esterase, putative YP_869478.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: bta:537914 similar to Transmembrane protease, serine 3 YP_869479.1 KEGG: son:SO2061 hypothetical protein YP_869480.1 PFAM: Uncharacterized conserved protein UCP025560; KEGG: son:SO2062 hypothetical protein YP_869481.1 KEGG: son:SO2063 hypothetical protein YP_869482.1 KEGG: son:SO2064 hypothetical protein YP_869483.1 TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; KEGG: son:SO2065 tyrosine-specific transport protein YP_869484.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis YP_869485.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_869486.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_869487.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_869488.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate YP_869489.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_869490.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_869491.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_869492.1 KEGG: son:SO2075 hypothetical protein YP_869493.1 KEGG: son:SO2076 hypothetical protein YP_869494.1 KEGG: son:SO2077 acyltransferase domain protein YP_869495.1 KEGG: son:SO2079 hypothetical protein YP_869496.1 SMART: helicase c2; KEGG: son:SO2081 ATP-dependent helicase, DinG family YP_869497.1 KEGG: son:SO2082 rod shape-determining-related protein YP_869498.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ppr:PBPRB1825 hypothetical receptor YP_869499.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO2083 methyl-accepting chemotaxis protein YP_869500.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_869501.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_869502.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_869503.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA YP_869504.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis, HypA; KEGG: son:SO2089 hydrogenase expression/formation protein HypA YP_869505.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: son:SO2090 hydrogenase expression/formation protein HypE YP_869506.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: son:SO2091 hydrogenase expression/formation protein HypD YP_869507.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: son:SO2092 hydrogenase assembly chaperone hypC/hupF YP_869508.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: son:SO2093 hydrogenase accessory protein HypB YP_869509.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: eca:ECA1964 putative molybdopterin oxidoreductase YP_869510.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase, subunit FdhD; KEGG: pfo:Pfl_0280 formate dehydrogenase, subunit FdhD YP_869511.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vpa:VPA0961 putative transcriptional regulator YP_869512.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain protein; zinc finger, HypF domain protein; KEGG: son:SO2094 hydrogenase maturation protein HypF YP_869513.1 KEGG: son:SO2095 hypothetical protein YP_869514.1 TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52, hydrogen uptake protein; KEGG: son:SO2096 hydrogenase expression/formation protein YP_869515.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: son:SO2097 quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit YP_869516.1 PFAM: nickel-dependent hydrogenase, large subunit; KEGG: son:SO2098 hydrogenase large chain YP_869517.1 TIGRFAM: hydrogenase (NiFe) small subunit HydA; Twin-arginine translocation pathway signal; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein; KEGG: son:SO2099 hydrogenase small chain YP_869518.1 PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: son:SO2100 thioredoxin family protein YP_869519.1 KEGG: son:SO2101 lipoprotein, putative YP_869520.1 KEGG: son:SO2102 hypothetical protein YP_869521.1 PFAM: ApbE family lipoprotein; KEGG: son:SO2103 ApbE family protein YP_869522.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2104 DNA-binding response regulator YgiX, putative YP_869523.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2105 sensor protein YgiY, putative YP_869524.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan YP_869525.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space YP_869526.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO2109 hypothetical protein YP_869527.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: son:SO2110 hypothetical protein YP_869528.1 KEGG: son:SO2111 hypothetical protein YP_869529.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_869530.1 PFAM: protein of unknown function DUF490; KEGG: son:SO2113 hypothetical protein YP_869531.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: son:SO2114 hypothetical protein YP_869532.1 PFAM: peptidase T2, asparaginase 2; KEGG: son:SO2115 asparaginase family protein YP_869533.1 PFAM: CBS domain containing protein; KEGG: son:SO2228 CBS domain protein YP_869534.1 KEGG: son:SO2229 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD/DEAH box helicase domain protein YP_869536.1 PFAM: NapD family protein; KEGG: son:SO0849 napD protein YP_869537.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC YP_869538.1 PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: ppr:PBPRA2029 hypothetical periplasmic nitrate reductase small subunit precursor YP_869539.1 TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; KEGG: pae:PA1172 cytochrome c-type protein NapC YP_869540.1 PFAM: restriction endonuclease YP_869541.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_06505 histone acetyltransferase HPA2/related acetyltransferase YP_869542.1 KEGG: son:SO2479 hypothetical protein YP_869543.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_869544.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO2477 alcohol dehydrogenase, iron-containing YP_869545.1 PFAM: aminotransferase, class V; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO2476 polysaccharide biosynthesis protein YP_869546.1 PFAM: carbonic anhydrase; KEGG: son:SO2474 carbonic anhydrase family protein YP_869547.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO2473 hydrolase, alpha/beta fold family YP_869548.1 PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: son:SO2472 D-alanyl-D-alanine carboxypeptidase-related protein YP_869549.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_869550.1 PFAM: arsenate reductase and related; KEGG: son:SO2470 hypothetical protein YP_869551.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: vvy:VV0250 outer membrane receptor protein YP_869552.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vpa:VPA0365 putative transcriptional regulator protein YP_869553.1 KEGG: vpa:VPA0364 putative efflux protein YP_869554.1 PFAM: acriflavin resistance protein; KEGG: vpa:VPA0363 putative efflux protein YP_869555.1 PFAM: outer membrane efflux protein; KEGG: vpa:VPA0362 putative outer membrane protein YP_869556.1 TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: ppr:PBPRB1161 putative paraquat-inducible protein A YP_869557.1 PFAM: Mammalian cell entry related domain protein; KEGG: ppr:PBPRB1160 putative paraquat-inducible protein B YP_869558.1 PFAM: protein of unknown function DUF330; KEGG: noc:Noc_2723 protein of unknown function DUF330 YP_869559.1 PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: mag:amb4188 di- and tricarboxylate transporters YP_869560.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: pae:PA3927 probable transcriptional regulator YP_869561.1 TIGRFAM: glucan 1,4-alpha-glucosidase; PFAM: glycoside hydrolase 15-related; KEGG: son:SO2459 glucoamylase YP_869562.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO2458 transporter, putative YP_869563.1 PFAM: YCII-related; KEGG: son:SO2457 hypothetical protein YP_869564.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vfi:VFA0653 IAA acetyltransferase YP_869566.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: ilo:IL2486 carboxymuconolactone decarboxylase family enzyme YP_869567.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ilo:IL2485 transcriptional regulator, AraC family YP_869568.1 KEGG: son:SO2450 alpha-glucosidase YP_869569.1 KEGG: son:SO2449 hypothetical protein YP_869570.1 PFAM: NUDIX hydrolase; KEGG: son:SO2448 MutT/nudix family protein YP_869571.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: son:SO2447 channel protein, hemolysin III family subfamily YP_869572.1 KEGG: son:SO2446 hypothetical protein YP_869573.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_869574.1 TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1; KEGG: son:SO2444 phosphomethylpyrimidine kinase/thiamine-phosphate pyrophosphorylase YP_869575.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: son:SO2443 thiF protein, putative YP_869576.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: son:SO2442 thiS protein, putative YP_869577.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_869578.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center YP_869579.1 KEGG: son:SO2439.2 hypothetical methyl-accepting chemotaxis protein YP_869580.1 KEGG: son:SO2439 SrpA-related protein YP_869581.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2438 transcriptional regulator, LysR family YP_869582.1 KEGG: vch:VCA0962 hypothetical protein YP_869583.1 KEGG: son:SO2437 hypothetical protein YP_869584.1 TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: vch:VC1160 hypothetical protein YP_869585.1 KEGG: ppr:PBPRA1107 hypothetical protein YP_869586.1 PFAM: protein of unknown function DUF785; KEGG: ppr:PBPRA1108 hypothetical protein YP_869587.1 TIGRFAM: putative methyltransferase; PFAM: methyltransferase, putative; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO2436 methyltransferase, putative YP_869588.1 TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO2435 methyltransferase, putative YP_869589.1 KEGG: son:SO2434 extracellular solute-binding proteins, family 3/GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein, family 3 YP_869590.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_869591.1 PFAM: protein of unknown function DUF28; KEGG: son:SO2432 conserved hypothetical protein TIGR01033 YP_869592.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_869593.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_869594.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_869595.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2427 TonB-dependent receptor, putative YP_869596.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2426 DNA-binding response regulator YP_869597.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: son:SO2424 zinc carboxypeptidase domain protein YP_869598.1 KEGG: son:SO2423 hypothetical protein YP_869599.1 PFAM: protein of unknown function DUF1315; KEGG: son:SO2422 hypothetical protein YP_869600.1 converts asparagine to aspartate and ammonia YP_869601.1 TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: son:SO2420 signal peptide peptidase SppA, 67K type YP_869602.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO2419 2,4-dienoyl-CoA reductase, putative YP_869603.1 KEGG: xcb:XC_2154 hypothetical protein YP_869604.1 PFAM: ferredoxin; KEGG: son:SO2417 iron-sulfur cluster-binding protein YP_869605.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA YP_869606.1 Catalyzes the rate-limiting step in dNTP synthesis YP_869607.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO2414 phosphoglycolate phosphatase YP_869608.1 Involved in ubiquinone biosynthesis YP_869609.1 TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: son:SO2411 DNA gyrase subunit A YP_869610.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_869611.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_869612.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_869613.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_869614.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_869615.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_869616.1 PFAM: protein of unknown function DUF1049; KEGG: son:SO2400 hypothetical protein YP_869617.1 KEGG: son:SO2399 hypothetical protein YP_869618.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_869619.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO2397 short chain dehydrogenase YP_869620.1 KEGG: son:SO2396 hypothetical protein YP_869621.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO2395 acyl-CoA dehydrogenase family protein YP_869622.1 TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: son:SO2394 penicillin-binding protein 4 YP_869623.1 KEGG: son:SO2393 hypothetical protein YP_869624.1 KEGG: son:SO2391 hypothetical protein YP_869625.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome YP_869626.1 multidrug efflux protein involved in adaptation to low energy shock YP_869627.1 PFAM: beta-lactamase; KEGG: son:SO2388 beta-lactamase YP_869628.1 PFAM: DTW domain containing protein; KEGG: son:SO2387 conserved hypothetical protein YP_869629.1 PFAM: secretion protein HlyD family protein; KEGG: bth:BT0304 acriflavine resistance protein A precursor YP_869630.1 PFAM: acriflavin resistance protein; KEGG: bth:BT0305 putative aminoglycoside efflux pump (acriflavine resistance protein) YP_869631.1 PFAM: outer membrane efflux protein; KEGG: cvi:CV0433 outer membrane efflux protein YP_869632.1 PFAM: protein of unknown function DUF839; KEGG: son:SO2385 hypothetical protein YP_869633.1 PFAM: phage integrase family protein; KEGG: son:SO2384 site-specific recombinase, phage integrase family YP_869634.1 KEGG: son:SO2383 hypothetical protein YP_869635.1 KEGG: son:SO2381 hypothetical protein YP_869636.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO2380 RecQ domain protein YP_869637.1 serine protease inhibitor, inhibits trypsin and other proteases YP_869638.1 KEGG: cps:CPS_3242 hypothetical protein YP_869639.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: bth:BT1650 putative teichoic acid biosynthesis protein F YP_869640.1 TIGRFAM: cytidyltransferase-related domain; glycerol-3-phosphate cytidylyltransferase; PFAM: cytidylyltransferase; KEGG: ppr:PBPRA2685 putative glycerol-3-phosphatecytidyltransferase YP_869641.1 PFAM: Nucleotidyl transferase; KEGG: mca:MCA1439 hypothetical protein YP_869642.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: sugar transferase; glycosyl transferase WecB/TagA/CpsF; KEGG: mca:MCA1437 bacterial sugar transferase/glycosyl transferase, WecB/TagA/CpsF family protein YP_869643.1 PFAM: glycosyl transferase, family 2; KEGG: ana:all2288 glucosyltransferase YP_869644.1 PFAM: polysaccharide biosynthesis protein; KEGG: ana:all2290 similar to polysaccharide biosynthesis export protein YP_869645.1 KEGG: ana:alr2296 unknown protein YP_869646.1 KEGG: ana:alr2295 unknown protein YP_869647.1 PFAM: polysaccharide export protein; KEGG: sde:Sde_3795 cold shock protein YP_869648.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mca:MCA1431 anti-anti-sigma factor family protein YP_869650.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mca:MCA1440 response regulator YP_869651.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: cvi:CV1854 probable periplasmic binding protein-related protein YP_869652.1 KEGG: nmu:Nmul_A1556 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_869653.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: vch:VC1021 LuxO repressor protein YP_869654.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO1434 methyl-accepting chemotaxis protein YP_869657.1 PFAM: phage integrase family protein; KEGG: tcx:Tcr_2093 hypothetical protein YP_869658.1 PFAM: metal-dependent phosphohydrolase, HD sub domain YP_869659.1 PFAM: phage integrase family protein; KEGG: dar:Daro_1324 phage integrase YP_869661.1 KEGG: dar:Daro_1322 hypothetical protein YP_869662.1 PFAM: sigma-54 factor, interaction domain-containing protein; SMART: AAA ATPase; KEGG: hch:HCH_05030 sigma 54-dependent transcriptional activator YP_869663.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; KEGG: sbo:SBO_4158 putative type I restriction enzyme R protein YP_869664.1 PFAM: N-6 DNA methylase; KEGG: sbo:SBO_4159 putative type I restriction enzyme M protein YP_869665.1 PFAM: restriction modification system DNA specificity domain; KEGG: spn:SP0508 type I restriction-modification system, S subunit YP_869666.1 KEGG: efa:EF2349 hypothetical protein YP_869667.1 KEGG: efa:EF2348 hypothetical protein YP_869668.1 KEGG: pfo:Pfl_2662 hypothetical protein YP_869669.1 KEGG: pfo:Pfl_2663 hypothetical protein YP_869670.1 PFAM: GTP-binding protein, HSR1-related; KEGG: pfo:Pfl_2664 GTP-binding protein, HSR1-like YP_869672.1 KEGG: hch:HCH_05025 predicted hydrolase (metallo-beta-lactamase superfamily) YP_869673.1 KEGG: hch:HCH_05024 hypothetical protein YP_869674.1 KEGG: lpf:lpl2493 hypothetical protein YP_869675.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: lpf:lpl2494 hypothetical protein YP_869676.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO2295 MATE efflux family protein YP_869677.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_869678.1 KEGG: son:SO2297 hypothetical protein YP_869679.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_869680.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_869681.1 PFAM: ribosomal protein L35; KEGG: son:SO2301 50S ribosomal protein L35 YP_869682.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_869683.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO2303 thioredoxin reductase YP_869684.1 TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: vfi:VF0903 alanine dehydrogenase YP_869685.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system YP_869686.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: son:SO2306 cell division protein FtsK, putative YP_869687.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: son:SO2307 outer membrane lipoprotein carrier protein LolA YP_869688.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: son:SO2308 ATPase, AAA family YP_869689.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_869690.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_869691.1 KEGG: son:SO2311 hypothetical protein YP_869692.1 PFAM: DsrC family protein; KEGG: son:SO2379 putative sulfite reductase YP_869693.1 PFAM: DsrH family protein; KEGG: son:SO2378 putative uncharacterized protein involved in oxidation of intracellular sulfur YP_869694.1 PFAM: DsrE family protein; KEGG: son:SO2377 putative uncharacterized protein involved in oxidation of intracellular sulfur YP_869695.1 PFAM: DsrE family protein; KEGG: son:SO2376 DsrE-related protein YP_869696.1 PFAM: protein of unknown function UPF0005; KEGG: son:SO2375 membrane protein, putative YP_869697.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2374 transcriptional regulator, LysR family YP_869698.1 uncharacterized member of the major facilitator superfamily (MFS) YP_869699.1 KEGG: cps:CPS_0533 hypothetical protein YP_869700.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate YP_869701.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source YP_869702.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism YP_869703.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sde:Sde_0770 putative phosphatase YP_869704.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: ilo:IL0306 transcriptional regulator, FadR family YP_869705.1 PFAM: glycoside hydrolase, family 43; KEGG: sde:Sde_0789 endo-1,4-beta-xylanase D precursor YP_869706.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_869707.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sde:Sde_0771 transcriptional regulator, GntR family YP_869708.1 PFAM: Aldose 1-epimerase; KEGG: gka:GK1877 aldose 1-epimerase YP_869709.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sde:Sde_0766 putative LacI-type transcriptional regulator YP_869710.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sde:Sde_0767 putative sugar uptake ABC transporter ATP-binding protein YP_869711.1 PFAM: inner-membrane translocator; KEGG: sde:Sde_0768 conserved hypothetical ABC transporter permease protein YtfT YP_869712.1 membrane component of a putative sugar ABC transporter system YP_869713.1 PFAM: glycoside hydrolase, family 43; KEGG: bha:BH1867 hypothetical protein YP_869714.1 PFAM: glycoside hydrolase, family 43; KEGG: cac:CAC1529 beta-xylosidase, family 43 glycosyl hydrolase YP_869716.1 KEGG: sde:Sde_0778 acetyl-CoA carboxylase, biotin carboxylase YP_869717.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: sde:Sde_0776 MJ0042 finger-like region YP_869718.1 KEGG: sde:Sde_0786 arabinan endo-1,5-alpha-L-arabinosidase YP_869719.1 PFAM: glycoside hydrolase, family 43; KEGG: sde:Sde_0791 alpha-L-arabinofuranosidase YP_869720.1 KEGG: ilo:IL2350 predicted permease YP_869721.1 TIGRFAM: TonB-dependent receptor; KEGG: sde:Sde_2288 peptidase M24A, methionine aminopeptidase, subfamily 1 YP_869722.1 KEGG: sde:Sde_3317 beta-xylosidase-like YP_869723.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ppr:PBPRB0783 hypothetical protein YP_869724.1 KEGG: rso:RSc2755 hypothetical protein YP_869725.1 TIGRFAM: Twin-arginine translocation pathway signal; formate dehydrogenase, alpha subunit; PFAM: DsrC family protein; KEGG: son:SO0101 formate dehydrogenase, major subunit (formate dehydrogenase alpha subunit) YP_869726.1 TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO0102 formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase beta subunit) YP_869727.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO0103 formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit) YP_869728.1 TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: son:SO0104 fdhE protein YP_869729.1 KEGG: sgl:SGP1_0047 transposase YP_869730.1 KEGG: vvu:VV12183 hypothetical protein YP_869731.1 KEGG: hit:NTHI1788 MukF homolog YP_869732.1 KEGG: eca:ECA2548 killing factor YP_869733.1 SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects YP_869736.1 KEGG: tcx:Tcr_1853 transposase IS3/IS911 YP_869737.1 KEGG: par:Psyc_1931 possible metal dependent phosphohydrolase YP_869739.1 PFAM: restriction endonuclease; KEGG: son:SO0304 hypothetical endonuclease YP_869740.1 PFAM: phage integrase family protein; KEGG: son:SO2370 site-specific recombinase, phage integrase family YP_869741.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO2366 response regulator YP_869742.1 KEGG: son:SO2365 hypothetical protein YP_869743.1 CcoN; FixN YP_869744.1 CcoO; FixO YP_869745.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: son:SO2362 cytochrome c oxidase, cbb3-type, CcoQ subunit YP_869746.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: son:SO2361 cytochrome c oxidase, cbb3-type, subunit III YP_869747.1 KEGG: son:SO2360 hypothetical protein YP_869748.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: son:SO2359 cation transport ATPase, E1-E2 family YP_869749.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: son:SO2358 cytochrome oxidase maturation protein, cbb3-type YP_869750.1 KEGG: son:SO2357 hypothetical protein YP_869751.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia YP_869752.1 with UspC and UspD is involved in resistance to UV irradiation YP_869753.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs YP_869754.1 KEGG: son:SO2353 hypothetical protein YP_869755.1 PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; KEGG: son:SO2352 bax protein, putative YP_869756.1 TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: son:SO2351 hypothetical protein YP_869757.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_869758.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent YP_869759.1 KEGG: son:SO2346 hypothetical protein YP_869760.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: son:SO2345 glyceraldehyde 3-phosphate dehydrogenase YP_869761.1 PFAM: superoxide dismutase, copper/zinc binding; KEGG: tbd:Tbd_0659 superoxide dismutase, Cu-Zn YP_869762.1 PFAM: Integrase, catalytic region; KEGG: pfo:Pfl_2131 integrase, catalytic region YP_869763.1 KEGG: pst:PSPTO4510 ISPsy11, transposase OrfA YP_869764.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_869765.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: son:SO2341 alpha keto acid dehydrogenase complex, E2 component YP_869766.1 PFAM: Transketolase, central region; Transketolase domain protein; KEGG: son:SO2340 alpha keto acid dehydrogenase complex, E1 component, beta subunit YP_869767.1 PFAM: dehydrogenase, E1 component; KEGG: son:SO2339 alpha keto acid dehydrogenase complex, E1 component, alpha subunit YP_869768.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism YP_869769.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: son:SO2337 peptide methionine sulfoxide reductase YP_869770.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_869771.1 negative modulator of the initiation of chromosome replication YP_869772.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: son:SO2333 hydrolase, alpha/beta fold family YP_869773.1 KEGG: son:SO2332 hypothetical protein YP_869774.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: son:SO2331 hypothetical protein YP_869775.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_869776.1 KEGG: son:SO2329 hypothetical protein YP_869777.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_869778.1 PFAM: Integrase, catalytic region; KEGG: pfo:Pfl_2131 integrase, catalytic region YP_869779.1 KEGG: pst:PSPTO4510 ISPsy11, transposase OrfA YP_869780.1 PFAM: Na+/H+ antiporter NhaC; KEGG: son:SO2481 hypothetical protein YP_869781.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_869782.1 KEGG: son:SO2484 hypothetical protein YP_869783.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_869784.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate YP_869785.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_869786.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: son:SO2488 6-phosphogluconolactonase YP_869787.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_869788.1 Represses the expression of the zwf, eda, glp and gap YP_869789.1 PFAM: pyruvate kinase; KEGG: son:SO2491 pyruvate kinase II YP_869790.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA YP_869791.1 PFAM: regulatory protein, TetR; KEGG: son:SO2493 transcriptional regulator, TetR family YP_869792.1 PFAM: peptidase M2, peptidyl-dipeptidase A; KEGG: son:SO2494 zinc-dependent metallopeptidase YP_869793.1 PFAM: Smr protein/MutS2; KEGG: son:SO2495 Smr domain protein YP_869794.1 KEGG: son:SO2495.1 hypothetical protein YP_869795.1 PFAM: SEC-C motif domain protein; KEGG: son:SO2497 conserved hypothetical protein YP_869796.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: son:SO2498 sensory box protein YP_869797.1 KEGG: son:SO2499 hypothetical protein YP_869798.1 KEGG: son:SO2500 hypothetical protein YP_869799.1 KEGG: son:SO2501 radical activating enzyme YP_869800.1 YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His YP_869801.1 PFAM: Rhomboid family protein; KEGG: son:SO2504 hypothetical protein YP_869802.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_869803.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: son:SO2507 GGDEF domain protein YP_869804.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: son:SO2508 RnfAE/NqrDE family protein YP_869805.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen YP_869806.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen YP_869807.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents YP_869808.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen YP_869809.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_869810.1 KEGG: son:SO2514 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop YP_869811.1 PFAM: phage integrase family protein; KEGG: tcx:Tcr_0088 phage integrase YP_869812.1 KEGG: tcx:Tcr_0087 hypothetical protein YP_869813.1 KEGG: tcx:Tcr_0086 hypothetical protein YP_869814.1 KEGG: tcx:Tcr_0085 hypothetical protein YP_869815.1 KEGG: aci:ACIAD2183 hypothetical protein YP_869817.1 KEGG: bja:blr0077 hypothetical protein YP_869819.1 KEGG: ana:all1974 unknown protein YP_869821.1 KEGG: sdn:Sden_1948 DNA gyrase, A subunit YP_869822.1 KEGG: ppr:PBPRA2540 hypothetical protein YP_869823.1 KEGG: ppr:PBPRA2541 hypothetical protein YP_869824.1 KEGG: ppr:PBPRA2542 hypothetical protein YP_869825.1 KEGG: bte:BTH_I1442 hypothetical protein YP_869826.1 KEGG: plu:plu4649 transposase, IS4 family YP_869827.1 KEGG: sdn:Sden_1900 NADH:flavin oxidoreductase/NADH oxidase YP_869829.1 KEGG: son:SO2515 hypothetical protein YP_869830.1 KEGG: ilo:IL2513 hypothetical protein YP_869831.1 PFAM: PepSY-associated TM helix domain protein; KEGG: ilo:IL2512 uncharacterized iron-regulated membrane protein YP_869832.1 PFAM: beta-lactamase domain protein; KEGG: eli:ELI_06065 Zn-dependent hydrolase, glyoxylase family protein YP_869833.1 KEGG: son:SO2517 hypothetical protein YP_869834.1 KEGG: son:SO2518 hypothetical protein YP_869835.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ppr:PBPRA0685 hypothetical protein YP_869836.1 PFAM: EAL domain protein; response regulator receiver; KEGG: ppr:PBPRA0684 hypothetical protein YP_869837.1 KEGG: ppr:PBPRA0683 hypothetical protein YP_869839.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMc00744 putative transport protein transmembrane YP_869840.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: son:SO2519 transcriptional regulator, AraC family YP_869841.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2520 GGDEF domain protein YP_869842.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2523 hypothetical TonB-dependent receptor YP_869843.1 PFAM: phytase; KEGG: son:SO2524 phytase, putative YP_869844.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO2525 ABC transporter, ATP-binding protein YP_869845.1 PFAM: Activator of Hsp90 ATPase family protein; KEGG: dar:Daro_4073 hypothetical protein YP_869846.1 PFAM: NERD domain protein; KEGG: msu:MS2110 hypothetical protein YP_869847.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; Hpt domain protein; KEGG: son:SO2127 response regulator YP_869848.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: son:SO2126 protein-glutamate methylesterase CheB YP_869849.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors YP_869850.1 PFAM: MCP methyltransferase, CheR-type; KEGG: son:SO2124 chemotaxis protein methyltransferase CheR YP_869851.1 PFAM: chemotaxis sensory transducer; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: son:SO2123 methyl-accepting chemotaxis protein YP_869852.1 PFAM: CheW domain protein; KEGG: son:SO2122 purine-binding chemotaxis protein CheW YP_869853.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: son:SO2121 chemotaxis protein CheA YP_869854.1 PFAM: response regulator receiver; KEGG: son:SO2120 chemotaxis protein CheY YP_869855.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: son:SO2119 response regulator YP_869856.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: son:SO2118 SpoIIAA family protein YP_869857.1 PFAM: chemotaxis sensory transducer; KEGG: son:SO2117 methyl-accepting chemotaxis protein YP_869858.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: son:SO2116 acetyltransferase, GNAT family YP_869859.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mlr8233 efflux pump protein FarB YP_869860.1 PFAM: secretion protein HlyD family protein; KEGG: ret:RHE_CH03357 probable protein secretion protein, HlyD family YP_869861.1 PFAM: regulatory protein, MarR; KEGG: ret:RHE_CH03358 probable transcriptional regulator protein, MarR family YP_869862.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2049 GGDEF family protein YP_869863.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: son:SO2048 membrane protein, putative YP_869864.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: son:SO2047 prolyl oligopeptidase family protein YP_869865.1 PFAM: regulatory protein, MarR; KEGG: son:SO2046 transcriptional regulator, MarR family YP_869866.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: son:SO2045 cation efflux family protein YP_869867.1 TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO2044 lactoylglutathione lyase YP_869868.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme YP_869869.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_869870.1 PFAM: protein of unknown function DUF195; KEGG: son:SO2041 hypothetical protein YP_869871.1 PFAM: Lytic transglycosylase, catalytic; KEGG: son:SO2040 soluble lytic murein transglycosylase, putative YP_869872.1 PFAM: EAL domain protein; KEGG: son:SO2039 hypothetical protein YP_869873.1 KEGG: xoo:XOO2925 hypothetical protein YP_869874.1 PFAM: GCN5-related N-acetyltransferase; KEGG: lic:LIC13189 acetyltransferase YP_869877.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: son:SO2153 MoxR protein YP_869878.1 PFAM: protein of unknown function DUF58; KEGG: son:SO2151 hypothetical protein YP_869879.1 PFAM: transglutaminase domain protein; KEGG: son:SO2150 transglutaminase family protein YP_869880.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: son:SO2149 exodeoxyribonuclease V, gamma subunit YP_869881.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: son:SO2148 exodeoxyribonuclease V, beta subunit YP_869882.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: son:SO2147 exodeoxyribonuclease V, alpha subunit YP_869883.1 KEGG: son:SO2146 hypothetical protein YP_869884.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dsy:DSY4339 hypothetical protein YP_869885.1 KEGG: pae:PA1930 probable chemotaxis transducer; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein YP_869886.1 KEGG: son:SO2245 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_869887.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: son:SO2244 transcriptional regulator, LacI family YP_869888.1 KEGG: son:SO2241 hypothetical protein YP_869889.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: son:SO2240 methyl-accepting chemotaxis protein YP_869890.1 KEGG: son:SO2239 hypothetical protein YP_869891.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: son:SO2238 phosphocarrier protein HPr YP_869892.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: son:SO2237 phosphotransferase system, enzyme I YP_869893.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose YP_869894.1 KEGG: son:SO2234 hypothetical protein YP_869895.1 KEGG: son:SO2291 hypothetical protein YP_869896.1 PFAM: Rhodanese domain protein; KEGG: son:SO2290 rhodanese domain protein YP_869897.1 PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: son:SO2288 glutathione-S-transferase domain protein YP_869899.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: son:SO2286 sulfate permease family protein YP_869900.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO2285 hypothetical protein YP_869901.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: son:SO2282 transcriptional regulator, GntR family YP_869902.1 KEGG: son:SO2281 alkaline phosphatase YP_869903.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO2280 bicyclomycin resistance protein YP_869904.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: son:SO2279 acetolactate synthase large subunit YP_869905.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_869906.1 PFAM: heat shock protein Hsp20; KEGG: son:SO2277 16 kDa heat shock protein A YP_869907.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_869908.1 PFAM: protein of unknown function DUF528; KEGG: son:SO2271 hypothetical protein YP_869909.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO2270 ribosomal protein S6 modification protein YP_869910.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: son:SO2269 ferredoxin, 2Fe-2S YP_869911.1 involved in the maturation of iron-sulfur cluster-containing proteins YP_869912.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins YP_869913.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: son:SO2266 HesB/YadR/YfhF family protein YP_869914.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: son:SO2265 NifU family protein YP_869915.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis YP_869916.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: son:SO2263 Rrf2 family protein YP_869917.1 TIGRFAM: serine O-acetyltransferase; KEGG: son:SO2262 serine acetyltransferase YP_869918.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO2261 RNA methyltransferase, TrmH family, group 1 YP_869919.1 PFAM: inositol monophosphatase; KEGG: son:SO2260 extragenic suppressor protein SuhB YP_869920.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: son:SO2259 lipoprotein releasing system transmembrane protein LolC, putative YP_869921.1 KEGG: son:SO2258 lipoprotein releasing system ATP-binding protein LolD; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_869922.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: son:SO2257 lipoprotein releasing system transmembrane protein LolE YP_869923.1 KEGG: son:SO2256 hypothetical protein YP_869924.1 TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO2255 transcription-repair coupling factor YP_869925.1 KEGG: son:SO2254 hypothetical protein YP_869926.1 catalyzes the hydrolysis of acylphosphate YP_869927.1 PFAM: protein of unknown function UPF0227; KEGG: son:SO2251 conserved hypothetical protein YP_869928.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides YP_869929.1 KEGG: son:SO2249 hypothetical protein YP_869930.1 TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: son:SO2248 L-serine dehydratase 1 YP_869931.1 KEGG: son:SO2247 hypothetical protein YP_869932.1 KEGG: pst:PSPTO4510 ISPsy11, transposase OrfA YP_869933.1 PFAM: Integrase, catalytic region; KEGG: pfo:Pfl_2131 integrase, catalytic region YP_869934.1 KEGG: son:SO2225 hypothetical protein YP_869935.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2224 acetyltransferase, GNAT family YP_869936.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: son:SO2223 peptidase, putative YP_869937.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: son:SO2222 fumarate hydratase, class I, anaerobic, putative YP_869938.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: son:SO2221 para-aminobenzoate synthase, component I YP_869939.1 PFAM: NUDIX hydrolase; KEGG: son:SO2220 MutT/nudix family protein YP_869940.1 KEGG: son:SO2219 hypothetical protein YP_869941.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_869942.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_869943.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-4 domain protein; KEGG: son:SO2216 sensory box protein YP_869944.1 PFAM: Fmu (Sun) domain protein; KEGG: son:SO2215 sun protein, putative YP_869945.1 TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: bmb:BruAb2_0185 glucose/galactose transporter YP_869946.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: son:SO2213 alpha-glucosidase YP_869947.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2162 TonB dependent receptor-related protein YP_869948.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: pha:PSHAa1354 alpha-amylase YP_869949.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: son:SO2156 alpha amylase family protein YP_869950.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO2155 glyoxalase family protein YP_869951.1 KEGG: cps:CPS_2680 hypothetical protein YP_869953.1 KEGG: son:SO2529 hypothetical protein YP_869954.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_869955.1 PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: son:SO2532 methylated-DNA--protein-cysteine methyltransferase, putative YP_869956.1 KEGG: son:SO2533 hypothetical protein YP_869957.1 PFAM: glutamine amidotransferase, class-II; KEGG: son:SO2535 hypothetical amidotransferase YP_869958.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA YP_869959.1 PFAM: sodium/hydrogen exchanger; KEGG: son:SO2537 sodium/hydrogen exchanger family protein YP_869960.1 KEGG: plu:plu4649 transposase, IS4 family YP_869961.1 KEGG: pst:PSPTO1858 hypothetical protein YP_869962.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: xcb:XC_1752 transcriptional regulator AraC family YP_869963.1 KEGG: hch:HCH_00506 hypothetical protein YP_869964.1 PFAM: major facilitator superfamily MFS_1; KEGG: vvu:VV11143 permease of the major facilitator superfamily YP_869965.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate YP_869966.1 SMART: protein tyrosine phosphatase, catalytic region; KEGG: ppu:PP1926 phosphatase family protein, putative YP_869967.1 KEGG: cps:CPS_3356 redox-active disulfide protein 2 YP_869968.1 PFAM: permease; KEGG: cps:CPS_3357 putative permease YP_869969.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: son:SO0533 arsenate reductase, putative YP_869970.1 PFAM: regulatory protein, ArsR; KEGG: son:SO0532 arsenical resistence operon repressor YP_869971.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cps:CPS_3358 transcriptional regulator, ArsR family YP_869972.1 PFAM: regulatory protein, ArsR; KEGG: son:SO0502 transcriptional regulator, ArsR family YP_869973.1 PFAM: permease; KEGG: son:SO0503 hypothetical protein YP_869974.1 PFAM: glutathione synthase, ATP-binding; KEGG: vfi:VF0976 glutathione synthetase YP_869975.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dsy:DSY4609 putative oxidoreductase iron-sulfur subunit YP_869976.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dsy:DSY4131 putative anaerobic dehydrogenase YP_869977.1 PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: dar:Daro_2638 arsenical resistance operon trans-acting repressor ArsD YP_869978.1 KEGG: dar:Daro_2637 anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase YP_869979.1 TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: sbo:SBO_3500 arsenical pump membrane protein YP_869980.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: sbo:SBO_3501 arsenate reductase YP_869981.1 PFAM: acriflavin resistance protein; KEGG: ava:Ava_2544 acriflavin resistance protein YP_869982.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xac:XAC2064 cation efflux system protein YP_869983.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: mhu:Mhun_0868 putative cytochrome c biogenesis protein YP_869984.1 KEGG: mhu:Mhun_0869 hypothetical protein YP_869985.1 TIGRFAM: redox-active disulfide protein 2; KEGG: plt:Plut_1705 redox-active disulfide protein 2 YP_869986.1 PFAM: regulatory protein, ArsR; KEGG: dps:DP0944 similar to ArsR-family transcription regulator YP_869989.1 PFAM: phage integrase family protein; KEGG: tcx:Tcr_2093 hypothetical protein YP_869990.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_869991.1 PFAM: phage integrase family protein; KEGG: dar:Daro_1324 phage integrase YP_869992.1 KEGG: dar:Daro_1323 hypothetical protein YP_869994.1 PFAM: transposase IS3/IS911 family protein; KEGG: sfx:S4629 ISEhe3 orfA YP_869995.1 KEGG: son:SOA0129 transposase, IS3 family YP_869996.1 PFAM: Integrase, catalytic region; KEGG: son:SOA0129 transposase, IS3 family YP_869997.1 PFAM: NnrS family protein; KEGG: vvy:VV2630 uncharacterized protein conserved in bacteria YP_869998.1 PFAM: cytochrome c552; KEGG: stm:STM4277 nitrite reductase periplasmic cytochrome c552 YP_869999.1 KEGG: son:SO2557 hypothetical protein YP_870000.1 KEGG: son:SO2559 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_870001.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_870002.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2561 transcriptional regulator, LysR family YP_870003.1 PFAM: Methyltransferase type 11; KEGG: son:SO2562 hypothetical protein YP_870004.1 PFAM: beta-lactamase domain protein; KEGG: son:SO2563 metallo-beta-lactamase family protein YP_870005.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: son:SO2564 transglycosylase, Slt family YP_870006.1 KEGG: son:SO2565 intracellular proteinase inhibitor domain protein YP_870007.1 KEGG: son:SO2566 AsmA protein YP_870008.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_870009.1 KEGG: son:SO2569 hypothetical protein YP_870010.1 KEGG: son:SO2570 lipoprotein, putative YP_870011.1 SMART: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO2571 ATP-dependent RNA helicase, DEAD box family YP_870012.1 KEGG: son:SO2572 peptidyl-prolyl cis-trans isomerase B YP_870013.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: plu:plu4649 transposase, IS4 family YP_870014.1 KEGG: son:SO2573 hypothetical protein YP_870015.1 KEGG: cps:CPS_3516 putative transglycosylase YP_870016.1 PFAM: protein of unknown function DUF709; KEGG: son:SO2575 hypothetical protein YP_870017.1 blocks the formation of polar Z-ring septums YP_870018.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO2577 septum site-determining protein MinD YP_870019.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_870020.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: son:SO2580 ribonuclease D YP_870021.1 Activates fatty acids by binding to coenzyme A YP_870022.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: son:SO2582 hydrolase, alpha/beta fold family YP_870023.1 KEGG: son:SO2583 hypothetical protein YP_870024.1 KEGG: son:SO2584 hypothetical protein YP_870025.1 KEGG: son:SO2585 hypothetical protein YP_870026.1 PFAM: peptidase M22, glycoprotease; KEGG: son:SO2586 hypothetical protein YP_870027.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_870028.1 this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae YP_870029.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: son:SO2589 isopenicillin-N synthase YP_870030.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_870031.1 KEGG: pae:PA4801 hypothetical protein YP_870032.1 KEGG: lic:LIC11419 hypothetical protein YP_870033.1 KEGG: dar:Daro_3432 hypothetical protein YP_870034.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: son:SO2208 phosphotyrosine protein phosphatase YP_870035.1 KEGG: son:SO2207 hypothetical protein YP_870036.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA YP_870037.1 PFAM: diacylglycerol kinase; KEGG: son:SO2203 diacylglycerol kinase YP_870038.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2202 transcriptional regulator, LysR family YP_870039.1 PFAM: protein of unknown function DUF413; KEGG: son:SO2201 hypothetical protein YP_870040.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO2200 ribosomal protein S6 modification protein, putative YP_870041.1 KEGG: son:SO2199 hypothetical protein YP_870042.1 PFAM: peptidase M28; KEGG: son:SO2198 hypothetical aminopeptidase YP_870043.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2197 GGDEF family protein YP_870044.1 TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; KEGG: son:SO2196 LPXTG-site transpeptidase family protein YP_870045.1 PFAM: von Willebrand factor, type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: son:SO2195 inter-alpha-trypsin inhibitor domain protein YP_870046.1 PFAM: OmpA/MotB domain protein; KEGG: son:SO2194 OmpA family protein YP_870047.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2193 DNA-binding response regulator YP_870048.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2192 sensor histidine kinase YP_870049.1 catalyzes the formation of L-homocysteine from cystathionine YP_870050.1 PFAM: CreA family protein; KEGG: son:SO2190 creA protein YP_870051.1 KEGG: son:SO2189 conserved hypothetical protein YP_870052.1 PFAM: Polyphosphate kinase; KEGG: vch:VC0723 polyphosphate kinase YP_870053.1 PFAM: Ppx/GppA phosphatase; KEGG: son:SO2185 exopolyphosphatase YP_870054.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: vfi:VF0917 hypothetical protein YP_870055.1 KEGG: son:SO2183 hypothetical protein YP_870056.1 PFAM: protein of unknown function DUF991; KEGG: son:SO2182 hypothetical protein YP_870057.1 KEGG: son:SO2181 hypothetical protein YP_870058.1 PFAM: peptidase M23B; KEGG: son:SO2180 peptidase, M23/M37 family YP_870059.1 KEGG: son:SO2179 hypothetical protein YP_870060.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: son:SO2178 cytochrome c551 peroxidase YP_870061.1 PFAM: 37kDa nucleoid-associated protein; KEGG: son:SO2177 hypothetical protein YP_870062.2 PFAM: protein of unknown function DUF1414; KEGG: son:SO2176 hypothetical protein YP_870063.1 PFAM: sulfatase; KEGG: son:SO2175 hypothetical protein YP_870064.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: xcb:XC_3073 xenobiotic flavin oxidoreductase A YP_870065.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sde:Sde_2875 transcriptional regulator, LysR family YP_870066.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2174 cyclic nucleotide phosphodiesterase, putative YP_870070.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: cps:CPS_4941 sensory box/GGDEF domain protein YP_870071.1 KEGG: son:SO2024 hypothetical protein YP_870072.1 KEGG: son:SO2022 hypothetical protein YP_870073.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_870074.1 PFAM: PfkB domain protein; KEGG: son:SO2020 inosine-guanosine kinase YP_870075.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_870076.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_870077.1 PFAM: Thioredoxin domain; KEGG: son:SO2017 putative thioredoxin-like protein YP_870078.1 molecular chaperone YP_870079.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_870080.1 PFAM: conserved hypothetical protein 103; KEGG: son:SO2014 conserved hypothetical protein TIGR00103 YP_870081.1 KEGG: son:SO2013 DNA polymerase III, gamma and tau subunits; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase YP_870082.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_870083.1 PFAM: protein of unknown function DUF454; KEGG: son:SO2011 hypothetical protein YP_870084.1 KEGG: son:SO2009 hypothetical protein YP_870085.1 PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: son:SO2008 hypothetical protein YP_870086.1 KEGG: son:SO2007 hypothetical protein YP_870087.1 PFAM: dihydrouridine synthase, DuS; KEGG: son:SO2006 NifR3/Smm1 family protein YP_870088.1 KEGG: son:SO2005 DksA-type zinc finger protein YP_870089.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides YP_870090.1 PFAM: phospholipase/Carboxylesterase; KEGG: son:SO1999 phospholipase/carboxylesterase family protein YP_870091.1 KEGG: son:SO1998 hypothetical protein YP_870092.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO1997 peptidase, M1 family YP_870093.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1995 peptidyl-prolyl cis-trans isomerase, FkbP family YP_870094.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO1994 membrane-bound lytic transglycolase-related protein YP_870095.1 KEGG: son:SO1991 hypothetical protein YP_870096.1 KEGG: son:SO1990 hypothetical protein YP_870097.1 PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO1989 chemotaxis protein CheV YP_870098.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO1988 hypothetical methyltransferase YP_870099.1 PFAM: peptidase S16, lon domain protein; KEGG: son:SO1987 ATP-dependent protease La (LON) domain protein YP_870100.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO1986 RNA polymerase sigma-70 factor, ECF subfamily YP_870101.1 TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: son:SO1985 transcriptional activator, putative YP_870102.1 KEGG: pha:PSHAa1300 hypothetical protein YP_870103.1 KEGG: ilo:IL0185 hypothetical protein YP_870104.1 KEGG: son:SO1978 hypothetical protein YP_870105.1 PFAM: protein of unknown function DUF307; KEGG: son:SO1977 hypothetical protein YP_870106.1 KEGG: son:SO1976 hydrolase, alpha/beta fold family YP_870107.1 KEGG: son:SO1975 zinc carboxypeptidase-related protein YP_870108.1 KEGG: son:SO1973 hypothetical ABC transporter protein YP_870109.1 KEGG: noc:Noc_2152 integral membrane protein TerC YP_870110.1 activates fatty acids by binding to coenzyme A YP_870111.1 KEGG: son:SO1970 hypothetical protein YP_870112.1 KEGG: son:SO1969 hypothetical protein YP_870113.1 KEGG: son:SO1968 hypothetical protein YP_870114.1 TIGRFAM: Protein of unknown function DUF124; KEGG: son:SO1966 conserved hypothetical protein TIGR00266 YP_870115.1 KEGG: son:SO1965 transcriptional regulator, LysR family YP_870116.1 PFAM: homogentisate 1,2-dioxygenase; Cupin 2, conserved barrel domain protein; KEGG: son:SO1963 homogentisate 1,2-dioxygenase YP_870117.1 TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO1962 4-hydroxyphenylpyruvate dioxygenase YP_870118.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dvu:DVU3106 GGDEF domain protein YP_870119.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: son:SO1961 maltose O-acetyltransferase YP_870120.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO1954 transporter, LysE family YP_870121.1 PFAM: protein of unknown function DUF482; KEGG: son:SO1953 hypothetical protein YP_870122.1 TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: son:SO1952 gamma-glutamyltranspeptidase YP_870123.1 KEGG: dps:DP1565 hypothetical protein YP_870124.1 KEGG: stm:STM1554 putative coiled-coil protein YP_870125.1 KEGG: lil:LA2762 hypothetical protein YP_870126.1 TIGRFAM: dipeptidase, putative; PFAM: peptidase M20; KEGG: cps:CPS_1363 putative dipeptidase YP_870127.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: bth:BT2834 peptidyl-dipeptidase YP_870128.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2707 acetyltransferase, GNAT family YP_870129.1 PFAM: nitroreductase; KEGG: son:SO2708 nitroreductase family protein YP_870130.1 PFAM: DoxX family protein; KEGG: son:SO2710 hypothetical protein YP_870131.1 KEGG: son:SO2711 hypothetical protein YP_870132.1 PFAM: aminoglycoside phosphotransferase; KEGG: son:SO2712 hypothetical protein YP_870133.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: son:SO2713 transporter, putative YP_870134.1 KEGG: son:SO2714 hypothetical protein YP_870135.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2715 TonB-dependent receptor YP_870136.1 PFAM: cyclic nucleotide-binding; KEGG: son:SO2717 cyclic nucleotide binding protein, putative YP_870137.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO2718 hypothetical protein YP_870138.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate YP_870139.1 PFAM: protein of unknown function DUF1425; KEGG: son:SO2720 hypothetical protein YP_870140.1 PFAM: thioesterase superfamily protein; KEGG: son:SO2721 hypothetical protein YP_870141.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: son:SO2722 hypothetical protein YP_870142.1 PFAM: histidine triad (HIT) protein; KEGG: son:SO2723 HIT family protein YP_870143.1 PFAM: peptidase M61 domain protein; KEGG: son:SO2724 protease, putative YP_870144.1 PFAM: regulatory protein, LuxR; KEGG: son:SO2725 transcriptional regulator, LuxR family YP_870145.1 PFAM: cytochrome B561; KEGG: son:SO2726 cytochrome b, putative YP_870146.1 KEGG: son:SO2727 cytochrome c3 YP_870147.1 putative metalloprotease YP_870148.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family YP_870149.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan YP_870150.1 KEGG: son:SO2736 hypothetical protein YP_870151.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_870152.1 TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO2738 biotin synthesis protein BioC YP_870153.1 PFAM: aminotransferase, class I and II; aminotransferase class-III; KEGG: son:SO2739 8-amino-7-oxononanoate synthase YP_870154.1 KEGG: son:SO2740 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_870155.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: son:SO2741 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_870156.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: vch:VC1248 methyl-accepting chemotaxis protein YP_870157.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2742 sensor histidine kinase/response regulator YP_870158.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_870159.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO2744 helicase YP_870160.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase YP_870161.1 KEGG: pha:PSHAa0696 hypothetical protein YP_870162.1 KEGG: son:SO2746 hypothetical protein YP_870163.1 PFAM: OmpA/MotB domain protein; KEGG: son:SO2747 peptidoglycan-associated lipoprotein YP_870164.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_870165.1 PFAM: TolA family protein; KEGG: son:SO2749 tolA protein YP_870166.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO2750 tolr protein YP_870167.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO2751 MotA/TolQ/ExbB proton channel family protein YP_870168.1 TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: son:SO2752 conserved hypothetical protein TIGR00051 YP_870169.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: son:SO2753 prolyl endopeptidase YP_870170.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bur:Bcep18194_B2548 FAD dependent oxidoreductase YP_870171.1 PFAM: protein of unknown function UPF0074; Helix-turn-helix, type 11 domain protein; KEGG: hch:HCH_02265 predicted transcriptional regulator YP_870172.1 PFAM: OmpA/MotB domain protein; KEGG: cps:CPS_3471 sodium-type flagellar protein MotY YP_870173.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A) YP_870174.1 PFAM: alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen; Redoxin domain protein; KEGG: cps:CPS_3474 antioxidant, AhpC/Tsa family YP_870175.1 PFAM: Gluconate transporter; Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: son:SO2757 membrane protein, putative YP_870176.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2758 GGDEF family protein YP_870177.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_870178.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_870179.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_870180.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO2762 nagD protein YP_870181.1 PFAM: peptidase M20; peptidase M28; KEGG: son:SO2766 hypothetical protein YP_870182.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP YP_870183.1 PFAM: Patatin; KEGG: pha:PSHAb0541 putative hydrolase similar to YjjU YP_870184.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAb0279 putative outer membrane receptor YP_870185.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO2768 acyl-CoA dehydrogenase family protein YP_870186.1 PFAM: Aldose 1-epimerase; KEGG: son:SO2769 hypothetical protein YP_870187.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: son:SO2771 2-hydroxy-3-oxopropionate reductase YP_870188.1 PFAM: thioesterase superfamily protein; KEGG: son:SO2772 cytosolic long-chain acyl-CoA thioester hydrolase family protein YP_870189.1 KEGG: son:SO2773 hypothetical protein YP_870190.1 PFAM: beta-ketoacyl synthase; KEGG: son:SO2774 3-oxoacyl-(acyl-carrier-protein) synthase II YP_870191.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO2776 3-oxoacyl-[acyl-carrier protein] reductase YP_870192.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: son:SO2777 malonyl CoA-acyl carrier protein transacylase YP_870193.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_870194.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_870195.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_870196.1 PFAM: protein of unknown function DUF177; KEGG: son:SO2781 hypothetical protein YP_870197.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: son:SO2782 maf protein, putative YP_870198.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ilo:IL1347 predicted phosphatase related to gph YP_870199.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: plu:plu2840 ribosomal large subunit pseudouridine synthase C (pseudouridylate synthase) (uracil hydrolyase) YP_870200.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: son:SO2785 ribonuclease E YP_870201.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: vvy:VV1265 sulfate permease family protein YP_870202.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: son:SO2787 cold shock domain family protein YP_870203.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth YP_870204.1 KEGG: son:SO2789 hypothetical protein YP_870205.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates YP_870206.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_870207.1 PFAM: protein of unknown function DUF1289; KEGG: son:SO2792 hypothetical protein YP_870208.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO2793 glyoxalase family protein YP_870209.1 KEGG: son:SO2794 hypothetical protein YP_870210.1 KEGG: son:SO2795 glyoxalase family protein YP_870211.1 PFAM: protein of unknown function DUF748; KEGG: son:SO2796 hypothetical protein YP_870212.1 PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain protein; KEGG: son:SO2797 hypothetical protein YP_870213.1 KEGG: son:SO2798 hypothetical protein YP_870214.1 KEGG: son:SO2799 lipoprotein, putative YP_870215.1 PFAM: protein of unknown function DUF343; KEGG: son:SO2800 hypothetical protein YP_870216.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate YP_870217.1 KEGG: son:SO2802 ABC transporter, ATP-binding protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase YP_870218.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: son:SO2803 DNA internalization-related competence protein ComEC/Rec2 YP_870219.1 KEGG: son:SO2804 hypothetical protein YP_870220.1 PFAM: NnrS family protein; KEGG: son:SO2805 putative uncharacterized protein involved in response to NO YP_870221.1 PFAM: phosphate-starvation-inducible E; KEGG: son:SO2806 hypothetical protein YP_870222.1 PFAM: type IV pilus assembly PilZ; KEGG: son:SO2807 hypothetical protein YP_870223.1 KEGG: son:SO2808 hypothetical protein YP_870224.1 KEGG: son:SO2809 RepA domain protein YP_870225.1 KEGG: son:SO2821 hypothetical protein YP_870226.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type, transmembrane region; KEGG: son:SO2822 sensor histidine kinase YP_870227.1 unknown function; when overproduced it confers drug-resistance YP_870228.1 PFAM: carbon starvation protein CstA; KEGG: son:SO2823.1 hypothetical carbon starvation protein A YP_870229.1 KEGG: son:SO2827 hypothetical protein YP_870230.1 KEGG: pha:PSHAa2586 L-sorbosone dehydrogenase (SNDH) YP_870231.1 KEGG: son:SO2829 hypothetical protein YP_870232.1 KEGG: son:SO2830 hypothetical protein YP_870233.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate YP_870234.1 KEGG: son:SO2832 hypothetical protein YP_870235.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions YP_870236.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_870237.1 KEGG: son:SO2835 hypothetical protein YP_870238.1 PFAM: Patatin; KEGG: son:SO2836 hypothetical protein YP_870239.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO2838 ATP-dependent RNA helicase, DEAD box family YP_870240.1 KEGG: son:SO2839 hypothetical protein YP_870241.1 PFAM: protein of unknown function DUF45; KEGG: son:SO2840 hypothetical protein YP_870242.1 KEGG: son:SO2841 hypothetical protein YP_870243.1 PFAM: peptidase M23B; Opacity-associated protein A; KEGG: son:SO2842 peptidase, M23/M37 family YP_870244.1 KEGG: son:SO2843 exonuclease SbcC, putative YP_870245.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: son:SO2844 exonuclease SbcD, putative YP_870246.1 PFAM: protein of unknown function DUF81; KEGG: son:SO2846 hypothetical protein YP_870247.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2847 transcriptional regulator, LysR family YP_870248.1 PFAM: protein of unknown function DUF1260; KEGG: son:SO1836 hypothetical protein YP_870249.1 PFAM: RNA-binding S4 domain protein; KEGG: son:SO1835 hypothetical protein YP_870250.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1834 acetyltransferase, GNAT family YP_870251.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO1832 peptidyl-prolyl cis-trans isomerase C YP_870252.1 PFAM: protein of unknown function DUF885; KEGG: son:SO1831 hypothetical protein YP_870253.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1830 GGDEF domain protein YP_870254.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO1829 TPR domain protein YP_870255.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: son:SO1828 TonB2 protein YP_870256.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO1827 TonB system transport protein ExbD2 YP_870257.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO1826 TonB system transport protein ExbB2 YP_870258.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO1825 MotA/TolQ/ExbB proton channel family protein YP_870259.1 KEGG: son:SO1824 hypothetical protein YP_870260.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1822 TonB-dependent receptor, putative YP_870261.1 PFAM: porin, Gram-negative type; KEGG: son:SO1821 outer membrane porin, putative YP_870262.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C YP_870263.1 helicase involved in DNA repair and perhaps also replication YP_870264.1 PFAM: protein of unknown function DUF81; KEGG: son:SO1818 hypothetical protein YP_870265.1 KEGG: son:SO1817 primosomal replication protein N'', putative YP_870266.1 KEGG: son:SO1816 hypothetical protein YP_870267.1 PFAM: histone deacetylase superfamily; KEGG: son:SO1815 histone deacetylase/AcuC/AphA family protein YP_870268.1 KEGG: son:SO1814 hypothetical protein YP_870270.1 PFAM: Resolvase, N-terminal domain protein; Resolvase helix-turn-helix domain protein; KEGG: hit:NTHI0158 resolvase/integrase-like protein YP_870271.1 PFAM: KAP P-loop domain protein; KEGG: vpa:VP2900 hypothetical protein YP_870272.1 KEGG: plu:plu4649 transposase, IS4 family YP_870273.1 KEGG: vpa:VP2905 hypothetical protein YP_870274.1 PFAM: phage integrase family protein; KEGG: vpa:VP0643 hypothetical protein YP_870275.1 KEGG: son:SO1813 DNA-binding protein, putative; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1 YP_870276.1 TIGRFAM: methionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO1812 methionine gamma-lyase YP_870277.1 PFAM: conserved hypothetical protein 1620; KEGG: son:SO1811 hypothetical protein YP_870278.1 PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: son:SO1810 hypothetical ATPase YP_870279.1 PFAM: PspC domain protein; KEGG: son:SO1809 phage shock protein C YP_870280.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding YP_870281.1 PFAM: PspA/IM30 family protein; KEGG: son:SO1807 phage shock protein A YP_870282.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO1806 psp operon transcriptional activator YP_870283.1 PFAM: extracellular solute-binding protein, family 5; KEGG: son:SO1805 peptide ABC transporter, periplasmic peptide-binding protein YP_870284.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1804 peptide ABC transporter, permease protein YP_870285.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1803 peptide ABC transporter, permease protein YP_870286.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; KEGG: son:SO1802 peptide ABC transporter, ATP-binding protein YP_870287.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1801 peptide ABC transporter, ATP-binding protein YP_870288.2 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity YP_870289.1 TIGRFAM: Molybdenum-pterin binding; PFAM: TOBE domain protein; KEGG: mma:MM0224 molybdenum-pterin-binding-protein YP_870290.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO1798 peptidyl-prolyl cis-trans isomerase D YP_870291.1 PFAM: histone family protein DNA-binding protein; KEGG: son:SO1797 DNA-binding protein, HU family YP_870292.1 KEGG: son:SO1796 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_870293.1 binds and unfolds substrates as part of the ClpXP protease YP_870294.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_870295.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_870296.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_870297.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_870298.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO1790 peptidyl-prolyl cis-trans isomerase B YP_870299.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine YP_870300.1 PFAM: tRNA hydroxylase; KEGG: son:SO1788 tRNA-hydroxylase YP_870301.1 PFAM: protein of unknown function DUF1282; KEGG: son:SO1787 hypothetical protein YP_870302.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_870303.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: son:SO1784 ferrous iron transport protein B YP_870304.1 PFAM: FeoA family protein; KEGG: son:SO1783 ferrous iron transport protein A YP_870305.1 TIGRFAM: cytochrome C family protein; KEGG: son:SO1782 decaheme cytochrome c MtrD YP_870306.1 KEGG: son:SO1781 outer membrane protein, putative YP_870307.1 KEGG: son:SO1780 decaheme cytochrome c MtrF YP_870308.1 KEGG: son:SO1779 decaheme cytochrome c YP_870309.1 KEGG: son:SO1778 decaheme cytochrome c YP_870310.1 TIGRFAM: cytochrome C family protein; KEGG: son:SO1777 decaheme cytochrome c MtrA YP_870311.1 KEGG: son:SO1776 outer membrane protein precursor MtrB YP_870313.1 KEGG: son:SO1775 phage SPO1 DNA polymerase domain protein YP_870314.1 PFAM: peptidase M4, thermolysin; Propeptide, PepSY amd peptidase M4; KEGG: pae:PA3724 elastase LasB YP_870315.1 PFAM: sugar diacid recognition domain protein; KEGG: son:SO1774 hypothetical sugar diacid utilization regulator YP_870316.1 PFAM: Catalase domain protein; KEGG: son:SO1771.2 hypothetical catalase YP_870317.1 PFAM: Gluconate transporter; Citrate transporter; KEGG: son:SO1771 permease, GntP family YP_870318.1 PFAM: glycerate kinase; KEGG: son:SO1770 glycerate kinase YP_870319.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: son:SO1769 glutamate decarboxylase, putative YP_870320.1 KEGG: tcx:Tcr_0663 NAD-dependent DNA ligase (contains BRCT domain type II)-like YP_870323.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr3115 short chain dehydrogenase YP_870324.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein, AraC type; methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: ilo:IL0070 O6-methylguanine-DNA methyltransferase YP_870325.1 KEGG: son:SO1763 streptogramin A acetyl transferase YP_870326.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO1762 transcriptional regulator, AraC/XylS family YP_870327.1 PFAM: AzlC family protein; KEGG: son:SO1760 AzlC family protein YP_870328.1 PFAM: branched-chain amino acid transport; KEGG: son:SO1759 hypothetical protein YP_870329.1 PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_3038 multiple antibiotic resistance (MarC)-related proteins YP_870330.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase YP_870331.1 PFAM: ROK family protein; KEGG: yps:YPTB2439 hypothetical protein YP_870332.1 PFAM: sugar isomerase (SIS); KEGG: vvy:VVA1515 predicted phosphosugar isomerase YP_870333.1 PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; KEGG: ecj:JW3101 tagatose 6-phosphate aldolase 1, kbaZ subunit YP_870334.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: oxidoreductase domain protein; KEGG: son:SO3120 oxidoreductase, Gfo/Idh/MocA family YP_870335.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: ppr:PBPRB0140 putative DeoR-family regulatory protein YP_870336.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_0238 TonB-dependent receptor YP_870337.1 PFAM: Helix-turn-helix, type 11 domain protein; KEGG: son:SO1758 hypothetical protein YP_870338.1 PFAM: transcription activator, effector binding; KEGG: son:SO1757 hypothetical protein YP_870339.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO1756 glyoxalase family protein YP_870340.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: son:SO1755 phosphoglucomutase/phosphomannomutase family protein YP_870341.1 KEGG: son:SO1753 hypothetical protein YP_870342.1 KEGG: son:SO1748 hypothetical protein YP_870343.1 PFAM: Integral membrane protein TerC; KEGG: son:SO1747 membrane protein, putative YP_870344.1 KEGG: son:SO1746 hypothetical protein YP_870345.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO1745 3-beta hydroxysteroid dehydrogenase/isomerase family protein YP_870346.1 Catalyzes the specific recognition and activation of amino acids during peptide synthesis YP_870347.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO1743 hydrolase, alpha/beta hydrolase fold family YP_870348.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_870349.1 KEGG: son:SO1741 hypothetical protein YP_870350.1 PFAM: protein of unknown function DUF1289; KEGG: son:SO1739 hypothetical protein YP_870351.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: son:SO1738 hypothetical protein YP_870352.1 KEGG: pae:PA5291 probable choline transporter; TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter YP_870353.1 KEGG: son:SO1736 hypothetical protein YP_870354.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO1734 glyoxalase family protein YP_870355.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pha:PSHAb0146 putative transcriptional regulator (LysR family) YP_870356.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: ilo:IL2191 predicted permease, DMT superfamily YP_870357.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vch:VCA0470 acetyltransferase, putative YP_870359.1 KEGG: vvy:VV1783 hypothetical protein YP_870362.1 KEGG: son:SO3073 hypothetical protein YP_870363.1 KEGG: cvi:CV1058 hypothetical protein YP_870364.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon YP_870365.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_870366.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1724 phosphate ABC transporter, permease protein, putative YP_870367.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1723 phosphate ABC transporter, permease protein, putative YP_870368.1 PFAM: amino acid-binding ACT domain protein; KEGG: son:SO1722 ACT domain protein YP_870369.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: hch:HCH_00260 permease of the drug/metabolite transporter (DMT) superfamily YP_870370.1 PFAM: putative esterase; KEGG: ilo:IL2526 predicted hydrolase of the alpha/beta superfamily YP_870371.1 KEGG: son:SO1718 hypothetical protein YP_870373.1 KEGG: bbr:BB1298 hypothetical protein YP_870374.1 KEGG: son:SO1717 hypothetical protein YP_870375.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO1716 transporter, LysE family YP_870376.1 PFAM: protein of unknown function DUF1415; KEGG: son:SO1715 hypothetical protein YP_870377.1 KEGG: son:SO1710 hypothetical protein YP_870378.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: cps:CPS_0753 alkaline serine protease, subtilase family YP_870380.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: son:SO1708 4-hydroxybutyrate coenzyme A transferase YP_870381.1 PFAM: ABC-2 type transporter; KEGG: son:SO1707 ABC transporter, permease protein, putative YP_870382.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vvu:VV20598 ABC-type multidrug transport system, ATPase component YP_870383.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO1705 putative HlyD family secretion protein YP_870384.1 PFAM: regulatory protein, TetR; KEGG: ppr:PBPRA0420 putative transcriptional regulator YP_870385.1 KEGG: son:SO1702 hypothetical protein YP_870386.1 KEGG: son:SO1701 hypothetical protein YP_870387.1 KEGG: son:SO1700 hypothetical protein YP_870388.1 PFAM: transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO1699 transcriptional regulator YP_870389.1 KEGG: son:SO1698 hypothetical protein YP_870390.1 KEGG: son:SO1695 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: PAS domain containing protein YP_870391.1 PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: son:SO1694 FAD-binding protein YP_870392.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO1692 hypothetical protein YP_870393.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1690 ABC transporter, ATP-binding protein YP_870394.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: son:SO1689 cation transport ATPase, E1-E2 family YP_870395.1 PFAM: regulatory protein, MerR; KEGG: son:SO1687 transcriptional regulator, MerR family YP_870396.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO1686 prolyl oligopeptidase family protein YP_870397.1 KEGG: son:SO1685 hypothetical protein YP_870398.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_870399.1 TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: son:SO1682 3-hydroxyisobutyrate dehydrogenase YP_870400.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO1681 enoyl-CoA hydratase/isomerase family protein YP_870401.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_870402.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO1679 acyl-CoA dehydrogenase family protein YP_870403.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: son:SO1678 methylmalonate-semialdehyde dehydrogenase YP_870404.1 TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; KEGG: son:SO1677 acetyl-CoA acetyltransferase YP_870405.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_870406.1 KEGG: son:SO1675 hypothetical protein YP_870407.1 KEGG: son:SO1674 short chain dehydrogenase family protein YP_870408.1 receptor for colicin S4 YP_870409.1 PFAM: protein of unknown function DUF925; KEGG: son:SO1672 hypothetical protein YP_870410.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: son:SO1671 glutathione S-transferase family protein YP_870411.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: son:SO1670 fumarylacetoacetate hydrolase family protein YP_870412.1 PFAM: sigma-54 factor, interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: AAA ATPase; KEGG: son:SO1669 transcriptional regulatory protein TyrR YP_870413.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction YP_870414.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_870415.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: son:SO1665 UTP--glucose-1-phosphate uridylyltransferase YP_870416.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO1664 UDP-glucose 4-epimerase YP_870417.1 TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1663 ferredoxin-type protein NapF YP_870418.1 PFAM: protein of unknown function DUF583; KEGG: son:SO1662 hypothetical Ccm2-related protein YP_870419.1 PFAM: regulatory protein, LysR; KEGG: son:SO1661 transcriptional regulator, LysR family YP_870420.1 KEGG: son:SO1659 decaheme cytochrome c YP_870421.1 KEGG: son:SO1658 hypothetical protein YP_870422.1 PFAM: protein of unknown function DUF218; KEGG: son:SO1657 hypothetical protein YP_870423.1 catalyzes phosphorylation of fructose; cytosolic enzyme YP_870424.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: son:SO1655 cysQ protein YP_870426.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: son:SO1653 dTDP-4-dehydrorhamnose reductase YP_870427.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: son:SO1652 putative histidinol phosphatase YP_870428.1 PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SMART: DEAD/DEAH box helicase domain protein; KEGG: son:SO1651 Snf2 family protein YP_870429.1 PFAM: protein of unknown function DUF885; KEGG: cps:CPS_4234 hypothetical protein YP_870430.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: son:SO1647 glutathione-regulated potassium-efflux system protein KefB, putative YP_870431.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1646 GGDEF family protein YP_870432.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase-like; PFAM: PP-loop domain protein; KEGG: son:SO1645 cell cycle protein MesJ YP_870433.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_870434.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_870435.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_870436.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_870437.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_870438.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_870439.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: son:SO1638 outer membrane protein OmpH YP_870440.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: son:SO1637 bacterial surface antigen YP_870441.1 TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: son:SO1636 membrane-associated zinc metalloprotease, putative YP_870442.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_870443.1 PFAM: phosphatidate cytidylyltransferase; KEGG: son:SO1634 phosphatidate cytidylyltransferase YP_870444.1 TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; KEGG: son:SO1633 undecaprenyl diphosphate synthase YP_870445.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_870446.1 Catalyzes the phosphorylation of UMP to UDP YP_870447.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_870448.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_870449.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_870450.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_870451.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_870452.1 KEGG: cps:CPS_4299 hypothetical protein YP_870453.1 PFAM: CBS domain containing protein; GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mag:amb0553 response regulator YP_870454.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_870455.1 TIGRFAM: PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: son:SO1623 PTS system, glucose-specific IIBC component YP_870456.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_870457.1 PFAM: pseudouridine synthase; KEGG: vpa:VP2322 pseudouridine synthase Rlu family protein YP_870458.1 PFAM: protein of unknown function DUF446; KEGG: son:SO1619 hypothetical protein YP_870459.1 KEGG: son:SO1618 hypothetical protein YP_870460.1 KEGG: son:SO1617 hypothetical protein YP_870461.1 KEGG: son:SO1615 hypothetical protein YP_870462.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1614 acetyltransferase, GNAT family YP_870463.1 KEGG: son:SO1613 hypothetical protein YP_870464.1 KEGG: son:SO1612 hypothetical protein YP_870465.1 KEGG: son:SO1611 hypothetical protein YP_870466.1 KEGG: son:SO1610 hypothetical protein YP_870467.1 putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function YP_870468.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis YP_870469.1 PFAM: SpoOM family protein; KEGG: pha:PSHAa0857 SpoOM-related protein YP_870470.1 KEGG: son:SO1605 lipoprotein, putative YP_870471.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: son:SO1604 4'-phosphopantetheinyl transferase family protein YP_870472.1 KEGG: son:SO1603 transcriptional regulator, putative YP_870473.1 PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KEGG: son:SO1602 multi-domain beta-ketoacyl synthase YP_870474.1 KEGG: ppr:PBPRA1459 omega-3 polyunsaturated fatty acid synthase PfaB YP_870475.1 PFAM: beta-ketoacyl synthase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: son:SO1599 multi-domain beta-ketoacyl synthase YP_870476.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: son:SO1597 hypothetical protein YP_870479.1 KEGG: plu:plu4649 transposase, IS4 family YP_870480.1 KEGG: pha:PSHAa0536 hypothetical protein YP_870481.1 PFAM: Dual specificity protein phosphatase; diacylglycerol kinase, catalytic region; KEGG: pha:PSHAb0333 methylglyoxal synthase YP_870482.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: vpa:VP0080 putative sigma-54 interacting response regulator transcription regulator protein YP_870484.1 PFAM: transport-associated; KEGG: pha:PSHAa0325 hypothetical protein YP_870485.1 KEGG: son:SO1590 hypothetical protein YP_870486.1 KEGG: son:SO1589 hypothetical protein YP_870487.1 KEGG: son:SO1588 hypothetical protein YP_870488.1 KEGG: son:SO1587 hypothetical protein YP_870489.1 PFAM: cyclic nucleotide-binding; KEGG: son:SO1586 hypothetical cyclic nucleotide-binding domain protein YP_870490.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: son:SO1585 fumarylacetoacetate hydrolase family protein YP_870491.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: son:SO1583 hypothetical protein YP_870492.1 PFAM: regulatory protein, MarR; KEGG: son:SO1582 transcriptional regulator, MarR family YP_870493.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_1489 cyanate transporter, putative YP_870494.1 PFAM: PhnA protein; KEGG: son:SO1581 PhnA protein YP_870495.1 TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1580 TonB-dependent heme receptor YP_870496.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO1579 hypothetical protein YP_870497.1 PFAM: regulatory protein, TetR; KEGG: son:SO1578 transcriptional regulator, TetR family YP_870498.1 PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: son:SO1577 glutathione S-transferase family protein YP_870499.1 PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: son:SO1576 glutathione S-transferase family protein YP_870500.1 PFAM: Fmu (Sun) domain protein; KEGG: son:SO1575 NOL1/NOP2/sun family putative RNA methylase YP_870501.1 KEGG: son:SO1572 hypothetical protein YP_870502.1 KEGG: son:SO1571 hypothetical protein YP_870503.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: son:SO1570 GGDEF domain protein YP_870504.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO1569 integral membrane domain protein YP_870505.1 PFAM: YfaZ family protein; KEGG: son:SO1568 hypothetical protein YP_870506.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1566 acetyltransferase, GNAT family YP_870507.1 PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO1565 magnesium transporter, putative YP_870508.1 PFAM: glutathione peroxidase; KEGG: son:SO1563 glutathione peroxidase YP_870509.1 PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO1561 peptidase, M1 family YP_870510.1 TIGRFAM: phosphate binding protein; KEGG: son:SO1560 phosphate-binding protein YP_870511.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: son:SO1559 phosphate regulon sensor protein PhoR YP_870512.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO1558 phosphate regulon response regulator PhoB YP_870513.1 PFAM: porin, Gram-negative type; KEGG: son:SO1557 outer membrane porin, putative YP_870514.1 Required for efficient pilin antigenic variation YP_870515.1 PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: cps:CPS_3534 putative peptidase, M61 family YP_870516.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO1552 TPR domain protein YP_870517.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1551 GGDEF domain protein YP_870518.1 PFAM: conserved hypothetical protein 730; KEGG: son:SO1550 hypothetical protein YP_870519.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups YP_870520.1 KEGG: son:SO1548 hypothetical protein YP_870522.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO1539 hypothetical protein YP_870523.1 catalyzes the formation of 2-oxoglutarate from isocitrate YP_870524.1 KEGG: son:SO1536 hypothetical protein YP_870525.1 PFAM: protein of unknown function DUF423; KEGG: son:SO1535 hypothetical protein YP_870526.1 KEGG: son:SO1534 hypothetical protein YP_870527.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence YP_870528.1 KEGG: son:SO1532 hypothetical protein YP_870529.1 Required for the synthesis of the thiazole moiety YP_870530.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella YP_870531.1 Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. YP_870532.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: ppr:PBPRA0807 putative exodeoxyribonuclease, small subunit YP_870533.1 PFAM: Polyprenyl synthetase; KEGG: son:SO1526 geranyltranstransferase YP_870534.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_870535.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_870536.1 catalyzes the phosphorylation of NAD to NADP YP_870537.1 PFAM: L-lactate permease; KEGG: son:SO1522 L-lactate permease, putative YP_870538.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: son:SO1521 iron-sulfur cluster-binding protein YP_870539.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: son:SO1520 hypothetical protein YP_870540.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1519 iron-sulfur cluster-binding protein YP_870541.1 PFAM: protein of unknown function DUF162; KEGG: son:SO1518 hypothetical protein YP_870543.1 PFAM: protein of unknown function UPF0118; KEGG: mca:MCA0120 hypothetical protein YP_870544.1 PFAM: secretion protein HlyD family protein; KEGG: pfo:Pfl_2138 secretion protein HlyD YP_870545.1 KEGG: pfo:Pfl_2137 hypothetical protein YP_870546.1 PFAM: Ion transport 2 domain protein; KEGG: reu:Reut_A1737 hypothetical protein YP_870547.1 PFAM: phage integrase family protein; KEGG: vpa:VPA1270 hypothetical protein YP_870548.1 KEGG: vpa:VPA1269 hypothetical protein YP_870549.1 KEGG: vpa:VPA1268 hypothetical protein YP_870550.1 KEGG: vpa:VPA1267 hypothetical protein YP_870551.1 SMART: AAA ATPase; KEGG: vpa:VPA1266 putative ATP-dependent exoDNAse (exonuclease V), alpha subunit YP_870552.1 KEGG: ava:Ava_4263 hypothetical protein YP_870554.1 KEGG: son:SO1507 hypothetical protein YP_870555.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO1506 MATE efflux family protein YP_870556.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO1505 transporter, putative YP_870557.1 KEGG: son:SO1504 hypothetical protein YP_870558.1 SMART: extracellular solute-binding protein, family 3; KEGG: son:SO1503 ABC transporter, periplasmic substrate-binding protein, putative YP_870559.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: son:SO1502 cobalamin synthesis protein/P47K family protein YP_870560.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO1501 ATP-dependent RNA helicase, DEAD box family YP_870561.1 KEGG: son:SO1500 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; 5TM Receptors of the LytS-YhcK type, transmembrane region; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_870562.1 PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: son:SO1499 glycogen synthase YP_870563.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_870564.1 TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; KEGG: son:SO1496 glycogen phosphorylase family protein YP_870565.1 KEGG: son:SO1495 glycogen operon protein; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_870566.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_870567.1 TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; KEGG: son:SO1493 4-alpha-glucanotransferase YP_870568.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO1492 peptidyl-prolyl cis-trans isomerase, cyclophilin family YP_870569.1 PFAM: regulatory protein, MarR; KEGG: cps:CPS_1337 transcriptional regulator, MarR family YP_870570.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO1490 alcohol dehydrogenase II YP_870571.1 KEGG: son:SO1489 hypothetical protein YP_870572.1 KEGG: son:SO1487 hypothetical protein YP_870573.1 PFAM: thioesterase superfamily protein; KEGG: son:SO1486 cytosolic long-chain acyl-CoA thioester hydrolase family protein YP_870574.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: son:SO1484 isocitrate lyase YP_870575.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_870576.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1482 TonB-dependent receptor, putative YP_870577.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: son:SO1481 glutathione-regulated potassium-efflux system protein YP_870578.1 KEGG: son:SO1480 GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein YP_870579.1 KEGG: son:SO1479 hypothetical protein YP_870580.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO1478 methylase, putative YP_870581.1 PFAM: SmpA/OmlA domain protein; KEGG: son:SO1476 small protein A YP_870582.1 PFAM: protein of unknown function UPF0125; KEGG: son:SO1475 hypothetical protein YP_870583.1 PFAM: cyclase/dehydrase; KEGG: son:SO1474 hypothetical protein YP_870584.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_870585.1 PFAM: phage integrase family protein; KEGG: son:SO1471 site-specific recombinase, phage integrase family YP_870589.1 PFAM: HNH endonuclease; KEGG: mca:MCA0503 hypothetical protein YP_870590.1 KEGG: sil:SPOA0125 hypothetical protein YP_870591.1 KEGG: dde:Dde_2495 hypothetical protein YP_870592.1 PFAM: restriction modification system DNA specificity domain; KEGG: son:SO4264 type I restriction-modification system, S subunit YP_870593.1 PFAM: N-6 DNA methylase; KEGG: son:SO4265 type I restriction-modification system, M subunit YP_870594.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: plu:plu4880 hypothetical protein YP_870595.1 restriction endonuclease; the EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'; subunit R is required for both nuclease and ATPase activities YP_870597.1 KEGG: son:SO1425 hypothetical protein YP_870598.1 PFAM: Heavy metal transport/detoxification protein; KEGG: son:SO1407 mercuric transport periplasmic protein MerP, putative YP_870599.1 KEGG: son:SO1406 mercuric transport protein MerT, putative YP_870600.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: transglutaminase domain protein; KEGG: son:SO1405 transglutaminase family protein YP_870601.1 KEGG: vpa:VP2175 putative HAAAP family transport protein YP_870602.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: son:SO1404 endoribonuclease L-PSP, putative YP_870603.1 PFAM: protein of unknown function DUF1063; KEGG: son:SO1403 hypothetical protein YP_870604.1 PFAM: YheO domain protein; KEGG: son:SO1402 hypothetical protein YP_870605.1 KEGG: son:SO1401 hypothetical protein YP_870606.1 PFAM: protein of unknown function DUF368; KEGG: son:SO1400 hypothetical protein YP_870607.1 KEGG: cps:CPS_4932 hypothetical protein YP_870608.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: son:SO1397 cytosine deaminase YP_870609.1 PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: son:SO1396 hypothetical protein YP_870610.1 PFAM: protein of unknown function DUF1294; KEGG: son:SO1395 membrane protein,putative YP_870611.1 PFAM: regulatory protein, TetR; KEGG: son:SO1393 transcriptional regulator, TetR family YP_870612.1 PFAM: HPP family protein; KEGG: son:SO1392 hypothetical protein YP_870613.1 PFAM: short chain fatty acid transporter; KEGG: son:SO1391 short-chain fatty acids transporter YP_870614.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1390 peptidyl-prolyl cis-trans isomerase, FKBP-type YP_870615.1 PFAM: PKD domain containing protein; glycoside hydrolase, family 18; Carbohydrate-binding family V/XII; Chitinase A N-terminal domain protein; SMART: chitinase II; KEGG: vfi:VF1598 exochitinase YP_870616.1 PFAM: ROK family protein; KEGG: son:SO1389 ROK family protein YP_870617.1 PFAM: peptidase M24; KEGG: son:SO1388 aminopeptidase P, putative YP_870618.1 KEGG: son:SO1385 methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_870619.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO1383 ATP-dependent RNA helicase, DEAD box family YP_870620.1 PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: vpa:VPA0106 hypothetical protein YP_870621.1 KEGG: son:SO1382 hypothetical protein YP_870622.1 PFAM: alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen; Redoxin domain protein; KEGG: son:SO1381 hypothetical protein YP_870623.1 KEGG: son:SO1380 hypothetical protein YP_870624.1 KEGG: pfl:PFL_5800 periplasmic binding protein, putative YP_870625.1 KEGG: son:SO1379 hypothetical protein YP_870626.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: son:SO1378 ThiJ/PfpI family protein YP_870627.1 PFAM: band 7 protein; KEGG: son:SO1377 hypothetical protein YP_870628.1 PFAM: protein of unknown function DUF1449; KEGG: son:SO1376 hypothetical protein YP_870629.1 KEGG: eli:ELI_10435 hypothetical protein YP_870630.1 PFAM: peptidase M32, carboxypeptidase Taq metallopeptidase; KEGG: son:SO1375 carboxypeptidase YP_870631.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1374 acetyltransferase, GNAT family YP_870632.1 PFAM: protein of unknown function DUF486; KEGG: son:SO1373 hypothetical protein YP_870633.1 KEGG: son:SO1372 hypothetical protein YP_870634.1 PFAM: RDD domain containing protein; KEGG: son:SO1371 hypothetical protein YP_870635.1 PFAM: permease YjgP/YjgQ family protein; KEGG: son:SO1370 hypothetical protein YP_870636.1 PFAM: permease YjgP/YjgQ family protein; KEGG: son:SO1369 hypothetical protein YP_870637.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_870638.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; KEGG: son:SO1367 prephenate dehydratase/chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_870639.1 PFAM: sodium/hydrogen exchanger; KEGG: son:SO1366 sodium/hydrogen exchanger family protein YP_870640.1 KEGG: son:SO1365 hypothetical protein YP_870641.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: son:SO1364 iron-sulfur cluster-binding protein YP_870642.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_870643.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis YP_870644.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive YP_870645.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_870646.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_870647.1 Essential for efficient processing of 16S rRNA YP_870648.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_870649.1 with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins YP_870650.1 PFAM: cytochrome c assembly protein; KEGG: son:SO1355 hypothetical protein YP_870651.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: son:SO1354 hemolysin protein, putative YP_870652.1 PFAM: protein of unknown function DUF962; KEGG: son:SO1353 hypothetical protein YP_870653.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_870654.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_870655.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: son:SO1350 DNA repair protein RecO YP_870656.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_870657.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_870658.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: son:SO1347 signal peptidase I YP_870659.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_870660.1 PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: son:SO1345 sigma-E factor regulatory protein RseC YP_870661.1 PFAM: MucB/RseB family protein; KEGG: son:SO1344 sigma-E factor regulatory protein RseB YP_870662.1 KEGG: son:SO1343 sigma-E factor negative regulatory protein YP_870663.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_870664.1 catalyzes the formation of oxaloacetate from L-aspartate YP_870665.1 KEGG: son:SO1340 hypothetical protein YP_870666.1 PFAM: protein of unknown function DUF339; KEGG: son:SO1339 hypothetical protein YP_870667.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC YP_870668.1 KEGG: son:SO1337 hypothetical protein YP_870669.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH YP_870670.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_870671.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_870672.1 PFAM: protein of unknown function DUF81; KEGG: son:SO1333 hypothetical protein YP_870673.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: son:SO1332 phosphoenolpyruvate-protein phosphotransferase PtsP YP_870674.1 hydrolyzes diadenosine polyphosphate YP_870675.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair YP_870676.1 KEGG: son:SO1329 adenylate cyclase-related protein YP_870677.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1328 transcriptional regulator, LysR family YP_870678.1 PFAM: Hpt domain protein; KEGG: son:SO1327 sensor histidine kinase-related protein YP_870679.1 KEGG: son:SO1326 hypothetical protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_870680.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate YP_870681.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_870682.1 PFAM: purine and other phosphorylases, family 1; KEGG: son:SO1322 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase YP_870683.1 PFAM: cobalamin biosynthesis protein CbiB; KEGG: son:SO1321 CobD-related protein YP_870684.1 KEGG: son:SO1320 hypothetical protein YP_870685.1 PFAM: protein of unknown function UPF0126; KEGG: son:SO1319 hypothetical protein YP_870686.1 KEGG: son:SO1318 hypothetical protein YP_870687.1 KEGG: son:SO1317 hypothetical protein YP_870688.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_870689.1 PFAM: peptidase M23B; Opacity-associated protein A, N-terminal domain protein; KEGG: son:SO1314 peptidase, M23/M37 family YP_870690.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_870691.1 PFAM: transcriptional regulator domain protein; WD40 domain protein beta Propeller; KEGG: son:SO1312 TolB domain protein YP_870692.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO1310 hypothetical protein YP_870693.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1309 hypothetical TonB-dependent receptor YP_870694.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure YP_870695.1 KEGG: son:SO1306 hypothetical protein YP_870696.1 KEGG: son:SO1305 hypothetical protein YP_870697.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors YP_870698.1 KEGG: son:SO1303 hypothetical protein YP_870699.1 PFAM: Cl- channel, voltage-gated family protein; KEGG: son:SO1302 chloride channel YP_870700.1 Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate YP_870701.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_870703.1 PFAM: Citrate transporter; KEGG: sde:Sde_2571 endonuclease III/Nth YP_870704.1 KEGG: son:SO1298 general secretion pathway protein B YP_870705.1 PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: son:SO1297 general secretion pathway protein A YP_870706.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: yps:YPTB3411 tRNA nucleotidyltransferase (CCA-adding enzyme) YP_870707.1 KEGG: son:SO1295 major outer membrane lipoprotein, putative YP_870708.1 KEGG: son:SO1294 ribosomal RNA large subunit methyltransferase A, putative YP_870709.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_870710.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: son:SO1292 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_870711.1 TIGRFAM: dihydroneopterin aldolase; KEGG: son:SO1291 dihydroneopterin aldolase YP_870712.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_870713.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_870714.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_870715.1 PFAM: GatB/Yqey domain protein; KEGG: son:SO1287 hypothetical protein YP_870716.1 KEGG: son:SO1286 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase DnaG, DnaB-binding; DNA primase catalytic core, N-terminal domain protein; SMART: Toprim sub domain protein YP_870717.1 TIGRFAM: RNA polymerase sigma factor RpoD; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: son:SO1284 RNA polymerase sigma-70 factor YP_870718.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO1278 methyl-accepting chemotaxis protein YP_870719.1 TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: son:SO1277 proton-dependent oligopeptide transporter (POT) family protein YP_870720.1 PFAM: luciferase family protein; KEGG: pha:PSHAb0540 putative alkanal monooxygenase (FMN-linked) YP_870721.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate YP_870722.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: son:SO1275 succinate-semialdehyde dehydrogenase (NADP+) YP_870723.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO1274 probable oxidoreductase YP_870724.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1273 polyamine ABC transporter, permease protein YP_870725.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1272 polyamine ABC transporter, permease protein YP_870726.1 KEGG: son:SO1271 polyamine ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_870727.1 PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO1270 polyamine ABC transporter, periplasmic polyamine-binding protein YP_870728.1 PFAM: glutamine synthetase, catalytic region; KEGG: son:SO1268 glutamine synthetase YP_870729.1 PFAM: peptidase C26; KEGG: son:SO1267 hypothetical glutamine amidotransferase YP_870730.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: son:SO1265 transcriptional regulator, putative YP_870731.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO1264 hypothetical oxidoreductase YP_870732.1 KEGG: son:SO1262 hypothetical protein YP_870733.1 PFAM: Rhodanese domain protein; KEGG: son:SO1261 mercaptopyruvate sulfurtransferase YP_870734.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: ilo:IL1764 lipoprotein A family protein YP_870735.1 PFAM: aldehyde dehydrogenase; KEGG: son:SO3496 aldehyde dehydrogenase YP_870736.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_870737.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: hch:HCH_01157 methylmalonate-semialdehyde dehydrogenase YP_870738.1 PFAM: protein of unknown function DUF861, cupin_3; KEGG: son:SO3501 hypothetical protein YP_870739.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO3502 hypothetical protein YP_870740.1 TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3503 glucose/galactose transporter YP_870741.1 KEGG: son:SO3504 hypothetical protein YP_870742.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase YP_870743.1 PFAM: sugar isomerase (SIS); KEGG: son:SO3506 glucosamine-6-phosphate isomerase YP_870744.1 PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: son:SO3507 hypothetical protein YP_870745.1 PFAM: glycoside hydrolase, family 20; Carbohydrate-binding, chitobiase/hexosaminidase-type domain protein; glycoside hydrolase, family 20 domain protein; KEGG: son:SO3509 beta-hexosaminidase b precursor YP_870746.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: sde:Sde_0391 putative methyl-accepting chemotaxis sensory transducer YP_870747.1 KEGG: sde:Sde_2658 type IV pilus assembly protein PilM YP_870748.1 PFAM: protein of unknown function DUF81; KEGG: cps:CPS_1011 hypothetical protein YP_870750.1 PFAM: tryptophan halogenase; KEGG: son:SO3513 tryptophan halogenase, putative YP_870751.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO3514 hypothetical TonB-dependent receptor YP_870752.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: son:SO3516 transcriptional regulator, LacI family YP_870753.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO3517 NADH dehydrogenase YP_870754.1 PFAM: nitrogen regulatory protein P-II; KEGG: son:SO3519 nitrogen regulatory protein P-II 1 YP_870755.1 PFAM: methylation site containing protein; KEGG: son:SO3520 type IV pilus biogenesis protein, putative YP_870756.1 PFAM: methylation site containing protein; KEGG: son:SO3521 type IV pilus biogenesis protein, putative YP_870758.1 PFAM: methylation site containing protein; KEGG: son:SO3524 type IV pilus biogenesis protein PilE YP_870759.1 KEGG: son:SO3525 type IV pilin biogenesis protein, putative YP_870760.1 KEGG: son:SO3526 type IV pilus assembly protein PilX YP_870761.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: son:SO3527 type IV pilus assembly protein PilW YP_870762.1 TIGRFAM: type IV pilus modification protein PilV; PFAM: methylation site containing protein; KEGG: son:SO3528 type IV pilus assembly protein PilV YP_870763.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_870764.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO3530 peptidyl-prolyl cis-trans isomerase FkbP YP_870765.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_870766.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_870767.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase/FAD synthetase; KEGG: son:SO3533 riboflavin biosynthesis protein RibF YP_870768.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: son:SO3534 MviN protein YP_870770.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_870771.1 PFAM: regulatory protein, ArsR; KEGG: son:SO3538 transcriptional regulator HlyU YP_870772.1 PFAM: peptidase M20; peptidase M28; KEGG: son:SO3539 peptidase, M28D family YP_870773.1 PFAM: protein of unknown function DUF328; KEGG: son:SO3540 hypothetical protein YP_870774.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: son:SO3541 sodium:alanine symporter family protein YP_870775.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: son:SO3542 putative phosphoketolase YP_870776.1 PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: son:SO3545 OmpA family protein YP_870777.1 TIGRFAM: transaldolase; PFAM: Transaldolase; KEGG: son:SO3546 transaldolase YP_870778.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_870779.1 KEGG: son:SO3548 hypothetical protein YP_870780.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: son:SO3549 hypothetical protein YP_870781.1 KEGG: son:SO3550 hypothetical protein YP_870782.1 PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO3551 RNA polymerase sigma-70 factor, ECF subfamily YP_870783.1 PFAM: von Willebrand factor, type A; KEGG: son:SO3552 von Willebrand factor type A domain protein YP_870784.1 putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport YP_870785.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: son:SO3554 phosphoribosylaminoimidazole carboxylase, catalytic subunit YP_870786.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_870787.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: son:SO3556 cyclic nucleotide phosphodiesterase, putative YP_870788.1 KEGG: son:SO3557 hypothetical protein YP_870789.1 KEGG: son:SO3558 hypothetical protein YP_870790.1 involved in the first step of glutathione biosynthesis YP_870791.1 PFAM: peptidase M16 domain protein; KEGG: son:SO3560 peptidase, M16 family YP_870792.1 KEGG: son:SO3561 hypothetical protein YP_870793.1 PFAM: sodium:dicarboxylate symporter; KEGG: son:SO3562 proton/glutamate symporter, putative YP_870794.1 TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; KEGG: vvy:VV2798 oxaloacetate decarboxylase, beta subunit YP_870795.1 catalyzes the formation of pyruvate from oxaloacetate YP_870796.1 TIGRFAM: sodium pump decarboxylases, gamma subunit; PFAM: sodium pump decarboxylase, gamma subunit; KEGG: vvy:VV2800 oxaloacetate decarboxylase, gamma subunit YP_870797.1 TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: son:SO3575 CDP-diacylglycerol--serine O-phosphatidyltransferase, putative YP_870798.1 KEGG: son:SO3576 hypothetical protein YP_870799.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: son:SO3577 clpB protein YP_870800.1 PFAM: protein of unknown function DUF152; KEGG: son:SO3578 conserved hypothetical protein TIGR00726 YP_870801.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pha:PSHAa0933 pseudouridine synthase YP_870802.1 KEGG: son:SO3580 putative lipoprotein YP_870803.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3582 methyl-accepting chemotaxis protein YP_870804.1 PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: hch:HCH_01369 flavodoxin reductases (ferredoxin-NADPH reductases) family 1 YP_870805.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: pseudouridine synthase; KEGG: cps:CPS_4413 putative ribosomal small subunit pseudouridine synthase A YP_870806.1 PFAM: Helix-turn-helix, type 11 domain protein; KEGG: son:SO3584 hypothetical protein YP_870807.1 PFAM: NADPH-dependent FMN reductase; KEGG: son:SO3585 azoreductase, putative YP_870808.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO3586 glyoxalase family protein YP_870809.1 KEGG: son:SO3587 hypothetical protein YP_870810.1 PFAM: GPR1/FUN34/yaaH family protein; KEGG: son:SO3588 gpr1/fun34/YaaH family protein YP_870811.1 KEGG: son:SO3591 hypothetical protein YP_870812.1 PFAM: MltA-interacting MipA family protein; KEGG: son:SO3592 putative outer membrane protein YP_870813.1 KEGG: son:SO3593 hypothetical protein YP_870814.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO3594 transcriptional regulatory protein RstA, putative YP_870815.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO3595 sensor protein RstB, putative YP_870816.1 PFAM: protein of unknown function DUF1289; KEGG: son:SO3596 hypothetical protein YP_870817.1 KEGG: son:SO3597 hypothetical protein YP_870818.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide YP_870819.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO3599 sulfate ABC transporter, periplasmic sulfate-binding protein YP_870820.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO3600 sulfate ABC transporter, permease protein YP_870821.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO3601 sulfate ABC transporter, permease protein YP_870822.1 KEGG: son:SO3602 sulfate ABC transporter, ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_870823.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO3603 secretion protein, HlyD family YP_870824.1 KEGG: vfi:VFA0380 hypothetical protein YP_870826.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: son:SO3611 ATPase, AAA family YP_870827.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_870828.1 KEGG: son:SO3614 hypothetical protein YP_870829.1 SMART: Tetratricopeptide domain protein; KEGG: son:SO3615 hypothetical protein YP_870830.1 PFAM: protein of unknown function DUF1568; KEGG: son:SO0910 hypothetical protein YP_870831.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO3631 glycerate dehydrogenase YP_870832.1 KEGG: son:SO3632 hypothetical protein YP_870833.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system YP_870834.1 PFAM: Nucleotidyl transferase; KEGG: son:SO3634 nucleotidyltransferase family protein YP_870835.1 PFAM: aminoglycoside phosphotransferase; KEGG: son:SO3635 hypothetical phosphotransferase YP_870836.1 PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: son:SO3636 organic solvent tolerance protein YP_870837.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO3637 survival protein surA YP_870838.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_870839.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_870840.1 protein associated with Co2+ and Mg2+ efflux YP_870841.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_870842.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3642 methyl-accepting chemotaxis protein YP_870843.1 KEGG: son:SO3645 hypothetical protein YP_870844.1 PFAM: dihydrofolate reductase region; KEGG: son:SO3646 dihydrofolate reductase YP_870845.1 KEGG: son:SO3647 hypothetical protein YP_870846.1 PFAM: protein of unknown function DUF1212; KEGG: son:SO3648 hypothetical protein YP_870847.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_870848.1 involved in the peptidyltransferase reaction during translation YP_870849.1 PFAM: ribosomal protein L21; KEGG: son:SO3652 ribosomal protein L21 YP_870850.1 PFAM: Polyprenyl synthetase; KEGG: son:SO3653 octaprenyl-diphosphate synthase YP_870851.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_870852.1 KEGG: cvi:CV1035 hypothetical protein YP_870853.1 KEGG: son:SO3656 hypothetical protein YP_870854.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO3657 transporter, LysE family YP_870855.1 PFAM: peptidase S10, serine carboxypeptidase; KEGG: pcu:pc0501 hypothetical protein YP_870856.1 KEGG: son:SO3659 thiol:disulfide interchange protein, putative YP_870857.1 KEGG: son:SO3660 sigma-54 dependent transcriptional regulator/sensory box protein; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; AAA ATPase YP_870858.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO3660.1 hypothetical ferredoxin YP_870859.1 KEGG: ilo:IL2066 hypothetical protein YP_870860.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dps:DP2240 probable methionine aminopeptidase, MAP YP_870861.1 PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO3664 long-chain-fatty-acid--CoA ligase YP_870862.1 KEGG: son:SO3665 ABC transporter, ATP-binding/permease protein, putative; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase YP_870863.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: son:SO3667 hypothetical protein YP_870864.1 PFAM: protein of unknown function DUF1008; KEGG: son:SO3668 hypothetical protein YP_870865.1 TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO3669 heme transport protein YP_870866.1 TIGRFAM: TonB family protein; KEGG: son:SO3670 TonB1 protein YP_870867.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO3671 TonB system transport protein ExbB1 YP_870868.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO3672 TonB system transport protein ExbD1 YP_870869.1 PFAM: periplasmic binding protein; KEGG: son:SO3673 hemin ABC transporter, periplasmic hemin-binding protein YP_870870.1 PFAM: transport system permease protein; KEGG: son:SO3674 hemin ABC transporter, permease protein YP_870871.1 with HmuTU is involved in the transport of hemin YP_870872.1 KEGG: son:SO3676 hypothetical protein YP_870873.1 KEGG: son:SO3677 hypothetical protein YP_870874.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO3678 hypothetical protein YP_870875.1 KEGG: son:SO3679 hypothetical protein YP_870876.1 PFAM: protein of unknown function DUF924; KEGG: ilo:IL1577 hypothetical protein YP_870877.1 SMART: extracellular solute-binding protein, family 3; KEGG: mag:amb0186 ABC-type amino acid transport/signal transduction systems YP_870878.1 PFAM: UspA domain protein; KEGG: son:SO3680 universal stress protein family YP_870879.1 PFAM: UspA domain protein; KEGG: son:SO3681 universal stress protein family YP_870880.1 KEGG: son:SO3682 hypothetical protein YP_870881.1 PFAM: aldehyde dehydrogenase; KEGG: son:SO3683 coniferyl aldehyde dehydrogenase YP_870882.1 PFAM: regulatory protein, TetR; KEGG: son:SO3684 transcriptional regulator, TetR family YP_870883.1 PFAM: Curli production assembly/transport component CsgG; KEGG: son:SO3685 curli production assembly/transport component CsgG, putative YP_870884.1 KEGG: son:SO3686 curli production assembly/transport component CsgF, putative YP_870885.1 KEGG: son:SO3687 curli production assembly/transport component CsgE, putative YP_870886.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3688 nitrogen regulation protein NtrY, putative YP_870887.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: son:SO3689 sigma-54 dependent nitrogen response regulator YP_870888.1 PFAM: protein of unknown function DUF214; KEGG: son:SO3690 ABC transporter, permease protein YP_870889.1 PFAM: protein of unknown function DUF214; KEGG: xcb:XC_3666 ABC transporter ATP-binding protein YP_870890.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3692 ABC transporter, ATP-binding protein YP_870891.1 KEGG: son:SO3693 hypothetical protein YP_870892.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO3694 HlyD family secretion protein YP_870893.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_870894.1 KEGG: son:SO3696 hypothetical protein YP_870895.1 PFAM: protein of unknown function DUF1486; KEGG: son:SO3697 steroid delta-isomerase domain protein YP_870896.1 KEGG: son:SO3699.1 hypothetical protein YP_870897.1 KEGG: son:SO3704 hypothetical protein YP_870898.1 KEGG: vvu:VV12513 hypothetical protein YP_870899.1 KEGG: son:SO3708 hypothetical protein YP_870900.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_06484 histone acetyltransferase HPA2/related acetyltransferase YP_870901.1 KEGG: sde:Sde_1847 cell division protein ZipA YP_870902.1 PFAM: periplasmic binding protein; KEGG: son:SO3709 ABC transporter, periplasmic substrate-binding protein, putative YP_870903.1 KEGG: son:SO3711 hypothetical protein YP_870904.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_870905.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_870906.1 PFAM: cobalbumin biosynthesis enzyme; KEGG: son:SO1037 cobinamide kinase/cobinamide phosphate guanylyltransferase YP_870907.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_870908.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_870909.1 PFAM: transport system permease protein; KEGG: son:SO1034 iron-compound ABC transporter, permease protein YP_870910.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1033 iron-compound ABC transporter, ATP-binding protein, putative YP_870911.1 PFAM: Phosphoglycerate mutase; KEGG: son:SO1031 alpha-ribazole-5'-phosphate phosphatase, putative YP_870912.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_870916.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: dienelactone hydrolase; KEGG: son:SO1006 dienelactone hydrolase family protein YP_870917.1 KEGG: son:SO1004 hypothetical protein YP_870918.1 PFAM: MORN variant repeat protein; KEGG: son:SO1003 hypothetical protein YP_870919.1 PFAM: MORN variant repeat protein; KEGG: son:SO1002 hypothetical protein YP_870920.1 PFAM: sodium/calcium exchanger membrane region; KEGG: son:SO1001 calcium/proton antiporter YP_870921.1 PFAM: Rhomboid family protein; KEGG: son:SO1000 rhomboid family protein YP_870922.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7 YP_870923.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0997 transcriptional regulator, LysR family YP_870924.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO0996 glyoxalase family protein YP_870925.1 KEGG: son:SO0994 hypothetical protein YP_870926.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_870927.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: stm:STM3041c peptide chain release factor 2 YP_870928.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO0988 formate dehydrogenase, alpha subunit YP_870929.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: son:SO0987 methyl-accepting chemotaxis protein YP_870930.1 KEGG: son:SO0986 chromate transporter, putative; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter YP_870931.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; proteinase inhibitor I9, subtilisin propeptide; KEGG: son:SO4539 serine protease, subtilase family YP_870932.1 KEGG: pst:PSPTO4510 ISPsy11, transposase OrfA YP_870933.1 PFAM: Integrase, catalytic region; KEGG: pfo:Pfl_2131 integrase, catalytic region YP_870934.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: son:SO4539 serine protease, subtilase family YP_870935.1 PFAM: MltA-interacting MipA family protein; KEGG: son:SO3592 putative outer membrane protein YP_870937.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pha:PSHAa0853 response regulator (activator) in two-component regulatory YP_870938.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO0981 sensor histidine kinase YP_870939.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA YP_870940.1 PFAM: FAD dependent oxidoreductase; KEGG: son:SO0978 glycerol-3-phosphate dehydrogenase YP_870941.1 PFAM: regulatory protein, MarR; KEGG: son:SO0977 transcriptional regulator, MarR family YP_870942.1 PFAM: OsmC family protein; KEGG: son:SO0976 organic hydroperoxide resistance protein YP_870943.1 KEGG: son:SO0975 hypothetical protein YP_870944.1 KEGG: son:SO0974 hypothetical protein YP_870945.1 KEGG: son:SO0973 hypothetical protein YP_870946.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0972 hypothetical protein YP_870947.1 KEGG: son:SO0971 hypothetical protein YP_870948.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0970 fumarate reductase flavoprotein subunit precursor YP_870949.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO0968 D-lactate dehydrogenase YP_870950.1 PFAM: dienelactone hydrolase; KEGG: pha:PSHAa2188 hydrolase YP_870951.1 KEGG: son:SO0962 hypothetical protein YP_870952.1 KEGG: son:SO0961 hypothetical protein YP_870953.1 PFAM: Spermine synthase; KEGG: son:SO0960 hypothetical spermidine synthase YP_870954.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: son:SO0959 cytosol aminopeptidase YP_870955.1 PFAM: alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen; Redoxin domain protein; KEGG: son:SO0958 alkyl hydroperoxide reductase, C subunit YP_870956.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0956 alkyl hydroperoxide reductase, F subunit YP_870957.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0954 acetyltransferase, GNAT family YP_870958.1 KEGG: son:SO0953 hypothetical protein YP_870959.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: son:SO0952 single-stranded-DNA-specific exonuclease RecJ YP_870960.1 KEGG: son:SO0951 thiol:disulfide interchange protein DsbC YP_870961.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO0950 integrase/recombinase XerD YP_870962.1 PFAM: branched-chain amino acid transport system II carrier protein; KEGG: son:SO0949 branched-chain amino acid transport system II carrier protein BrnQ YP_870963.1 PFAM: methyltransferase small; KEGG: son:SO0948 hypothetical protein YP_870964.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: pha:PSHAa1150 response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase) YP_870965.1 KEGG: pha:PSHAa1151 two-component member protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; MHYT domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_870966.1 facilitates an early step in the assembly of the 50S subunit of the ribosome YP_870967.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO0946 hypothetical protein YP_870968.1 PFAM: acriflavin resistance protein; KEGG: son:SO0945 AcrB/AcrD/AcrF family protein YP_870969.1 PFAM: Radical SAM domain protein; KEGG: son:SO0944 hypothetical protein YP_870970.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; KEGG: son:SO0943 sensory box protein, putative YP_870971.1 KEGG: son:SO0942 hypothetical protein YP_870972.1 KEGG: son:SO0941 hypothetical protein YP_870973.1 PFAM: transcriptional regulator domain protein; KEGG: son:SO0940 transcriptional regulator-related protein YP_870974.1 KEGG: son:SO0939 cytochrome c, putative YP_870975.1 KEGG: son:SO0938 hypothetical protein YP_870976.1 KEGG: son:SO0937 hypothetical protein YP_870977.1 PFAM: transcriptional regulator domain protein; KEGG: son:SO0936 transcriptional regulator YP_870978.1 KEGG: son:SO0935 Na+/H+ antiporter YP_870979.1 PFAM: protein of unknown function DUF481; KEGG: son:SO0934 hypothetical protein YP_870980.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_870981.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_870982.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate YP_870983.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_870984.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_870986.1 KEGG: son:SO0927 hypothetical protein YP_870987.1 PFAM: EAL domain protein; KEGG: vvu:VV13056 FOG: EAL domain YP_870988.1 KEGG: son:SO0926 acetyltransferase, GNAT family YP_870989.1 KEGG: son:SO0925 GGDEF domain protein YP_870990.1 KEGG: son:SO0924 hypothetical protein YP_870991.1 PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: son:SO0923 hypothetical protein YP_870992.1 PFAM: sodium:dicarboxylate symporter; KEGG: son:SO0922 proton/glutamate symporter YP_870993.1 KEGG: son:SO0921 hypothetical protein YP_870994.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0920 acetyltransferase, GNAT family YP_870995.1 KEGG: son:SO0919 serine transporter, putative YP_870996.1 PFAM: peptidase S45, penicillin amidase; KEGG: son:SO0918 aculeacin A acylase YP_870997.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog YP_870998.1 PFAM: GCN5-related N-acetyltransferase; regulatory protein, MarR; KEGG: son:SO0916 putative acetyltransferase YP_870999.1 PFAM: beta-lactamase; KEGG: son:SO0914 hypothetical protein YP_871001.1 KEGG: son:SO0909 hypothetical protein YP_871002.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_871003.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. YP_871004.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm YP_871005.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_871006.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_871007.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_871008.1 PFAM: aldo/keto reductase; KEGG: son:SO0900 oxidoreductase, aldo/keto reductase family YP_871009.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO0899 glyoxalase family protein YP_871010.1 PFAM: protein of unknown function UPF0167; KEGG: son:SO0898 hypothetical protein YP_871012.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa1415 outer membrane protein YP_871013.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA YP_871014.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: son:SO0895 pirin family protein YP_871015.1 KEGG: son:SO0729 hypothetical protein YP_871016.1 KEGG: cvi:CV1058 hypothetical protein YP_871017.1 KEGG: rba:RB954 hypothetical protein YP_871018.1 KEGG: cps:CPS_3502 putative lipoprotein YP_871019.1 KEGG: sde:Sde_3062 hypothetical protein YP_871021.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO0886 hypothetical protein YP_871022.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0885 ABC transporter, ATP-binding protein YP_871023.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO0884 hypothetical protein YP_871024.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: son:SO0883 hypothetical protein YP_871025.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: son:SO0882 oxidoreductase, GMC family YP_871026.1 KEGG: son:SO0881 hypothetical protein YP_871027.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO0880 hypothetical protein YP_871028.1 KEGG: son:SO0879 hypothetical protein YP_871029.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: son:SO0878 phosphoribulokinase YP_871030.1 PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0877 acetyltransferase, GNAT family YP_871031.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide YP_871032.1 Regulatory factor involved in maltose metabolism YP_871033.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: son:SO0874 DnaK suppressor protein YP_871034.1 PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: son:SO0873 glutamyl-tRNA synthetase domain protein YP_871035.1 TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: son:SO0872 tRNA nucleotidyltransferase (CCA-adding enzyme) YP_871036.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: son:SO0871 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_871037.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_871038.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_871039.1 KEGG: son:SO0868 hypothetical protein YP_871040.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; PKD domain containing protein; Proprotein convertase, P; KEGG: son:SO0867 serine protease, subtilase family YP_871041.1 PFAM: Curlin associated repeat protein; KEGG: son:SO0866 minor curlin subunit CsgB, putative YP_871042.1 PFAM: Curlin associated repeat protein; KEGG: son:SO0865 hypothetical protein YP_871043.1 PFAM: regulatory protein, LuxR; KEGG: son:SO0864 transcriptional regulator, LuxR family YP_871044.1 KEGG: son:SO0863 hypothetical protein YP_871045.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_871046.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: son:SO0861 hypothetical protein YP_871047.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO0860 response regulator YP_871048.1 KEGG: son:SO0859 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_871049.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: son:SO0858 sodium:alanine symporter family protein YP_871050.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0857 ABC transporter, ATP-binding protein YP_871051.1 PFAM: protein of unknown function DUF214; KEGG: son:SO0856 putative ABC transport system permease protein YP_871052.1 KEGG: son:SO0855 hypothetical protein YP_871053.1 PFAM: methylation site containing protein; KEGG: son:SO0854 type IV pilin, putative YP_871054.1 PFAM: methylation site containing protein; KEGG: son:SO0853 pilin, putative YP_871055.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: son:SO0852 type IV pilus assembly protein PilV YP_871056.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: son:SO0851 hypothetical protein YP_871057.1 KEGG: son:SO0850 hypothetical protein YP_871058.1 PFAM: NapD family protein; KEGG: son:SO0849 napD protein YP_871059.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC YP_871060.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway YP_871061.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA YP_871062.1 KEGG: son:SO0845 cytochrome c-type protein NapB YP_871063.1 KEGG: son:SO0844 hypothetical protein YP_871064.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0843 transcriptional regulator, LysR family YP_871065.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_871066.1 KEGG: son:SO0841 GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein, family 3 YP_871067.1 PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO0840 acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase YP_871068.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0839 transcriptional regulator, LysR family YP_871069.1 PFAM: penicillin-binding protein, transpeptidase; KEGG: son:SO0837 beta-lactamase, putative YP_871070.1 KEGG: son:SO0835 hypothetical protein YP_871071.1 PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; KEGG: son:SO0834 sprT protein, putative YP_871072.1 PFAM: Endonuclease I; KEGG: son:SO0833 endonuclease I YP_871073.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_871074.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_871075.1 PFAM: Alkaline phosphatase; KEGG: son:SO0830 alkaline phosphatase YP_871076.1 PFAM: methyltransferase small; Methyltransferase small, N-terminal domain protein; KEGG: son:SO0828 ribosomal RNA small subunit methyltransferase C YP_871080.1 PFAM: protein of unknown function DUF342; KEGG: son:SO0826 hypothetical protein YP_871081.1 KEGG: son:SO0824 hypothetical protein YP_871082.1 PFAM: peptidase M50; KEGG: son:SO0823 hypothetical protein YP_871083.1 PFAM: outer membrane efflux protein; KEGG: son:SO0822 outer membrane efflux family protein YP_871084.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: son:SO0821 ABC transporter, ATP-binding/permease protein YP_871085.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO0820 HlyD family secretion protein YP_871086.1 TIGRFAM: esterase, PHB depolymerase family; KEGG: cps:CPS_0935 putative polyhydroxyalkanoate depolymerase YP_871087.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_0936 TonB-dependent receptor YP_871088.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: cps:CPS_0937 DNA-binding response regulator, LuxR family YP_871089.1 TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cps:CPS_0939 sensory box sensor histidine kinase/response regulator YP_871090.1 PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_0940 major facilitator family transporter YP_871091.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: cps:CPS_0941 putative lipase YP_871093.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_871094.1 catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis YP_871095.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cps:CPS_0943 D-beta-hydroxybutyrate dehydrogenase YP_871096.1 TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; KEGG: cps:CPS_1598 3-oxoadipate CoA-succinyl transferase, alpha subunit YP_871097.1 TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; KEGG: cps:CPS_1597 3-oxoadipate CoA-succinyl transferase, beta subunit YP_871098.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_871099.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0817 transcriptional activator protein MetR YP_871100.1 KEGG: son:SO0816 hypothetical protein YP_871101.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO0815 TonB-dependent receptor C-terminal domain protein YP_871102.1 KEGG: rfr:Rfer_3959 hypothetical protein YP_871103.1 KEGG: son:SO0813 hypothetical protein YP_871104.1 KEGG: son:SO0812 hypothetical protein YP_871105.1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific YP_871106.1 catalyzes the formation of D-ribose 5-phosphate from ribose YP_871107.1 PFAM: blue (type 1) copper domain protein; KEGG: son:SO0809 azurin precursor YP_871108.1 KEGG: son:SO0808 hypothetical protein YP_871109.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sde:Sde_0801 glycerophosphoryl diester phosphodiesterase family protein YP_871110.1 KEGG: son:SO0807 hypoxanthine-guanine phosphoribosyltransferase YP_871111.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Alkaline phosphatase; KEGG: son:SO0806 alkaline phosphatase, putative YP_871112.1 PFAM: CBS domain containing protein; KEGG: son:SO0805 CBS domain protein YP_871113.1 KEGG: son:SO0804 hypothetical protein YP_871114.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO0802 MATE efflux family protein YP_871115.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: son:SO0801 hypothetical protein YP_871116.1 PFAM: protein of unknown function DUF985; KEGG: son:SO0799 hypothetical protein YP_871117.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO0796 GGDEF family protein YP_871118.1 TIGRFAM: uncharacterized domain; PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: cps:CPS_1756 hypothetical protein YP_871119.1 KEGG: son:SO0793 hypothetical protein YP_871120.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: son:SO0987 methyl-accepting chemotaxis protein YP_871121.1 KEGG: son:SO0792 hypothetical protein YP_871122.1 KEGG: son:SO0788 hypothetical protein YP_871125.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: rba:RB3794 conserved hypothetical ATP-binding protein HP0066 YP_871127.1 KEGG: pha:PSHAa0702 hypothetical protein ; membrane protein YP_871128.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_871129.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_871130.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_871131.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO0778 oxidoreductase, FAD-binding, UbiH/Coq6 family YP_871132.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO0777 2-octaprenyl-6-methoxyphenol hydroxylase YP_871133.1 TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: son:SO0776 hypothetical protein YP_871134.1 PFAM: protein of unknown function DUF710; KEGG: son:SO0775 hypothetical protein YP_871135.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: son:SO0774 5-formyltetrahydrofolate cyclo-ligase family protein YP_871136.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO0772 oxidoreductase, short chain dehydrogenase/reductase family YP_871137.1 PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: son:SO0771 hypothetical protein YP_871138.1 oxidizes malate to oxaloacetate YP_871139.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_871140.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: son:SO0768 putative NADH-flavin reductase YP_871141.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vvy:VVA0252 transcriptional regulator YP_871142.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: son:SO0740 melanin biosynthesis protein TyrA, putative YP_871143.1 TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: son:SO0741 gamma-glutamyltranspeptidase YP_871144.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: son:SO0742 iron(III) ABC transporter, ATP-binding protein YP_871145.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO0743 iron(III) ABC transporter, permease protein YP_871146.1 PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO0744 iron(III) ABC transporter, periplasmic iron(III)-binding protein YP_871147.1 KEGG: son:SO0745 hypothetical protein YP_871148.1 PFAM: Glutathione S-transferase, N-terminal domain protein; KEGG: son:SO0746 glutathione S-transferase family protein YP_871149.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: son:SO0747 ferredoxin--NADP reductase YP_871150.1 KEGG: son:SO0748 hypothetical protein YP_871151.1 PFAM: Phosphoglycerate mutase; KEGG: son:SO0749 hypothetical protein YP_871152.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: son:SO0750 glutamate synthase, putative YP_871153.1 KEGG: son:SO0752 hypothetical protein YP_871154.1 KEGG: son:SO0753 hypothetical protein YP_871155.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0754 ABC transporter, ATP-binding protein YP_871156.1 KEGG: son:SO0755 hypothetical protein YP_871157.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_871158.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0757 TPR domain protein YP_871159.1 KEGG: son:SO0758 hypothetical protein YP_871160.1 PFAM: Rh family protein/ammonium transporter; KEGG: son:SO0760 ammonium transporter YP_871161.1 PFAM: nitrogen regulatory protein P-II; KEGG: son:SO0761 nitrogen regulatory protein P-II 1 YP_871162.1 PFAM: isochorismatase hydrolase; KEGG: son:SO0762 isochorismatase family protein YP_871163.1 KEGG: ppr:PBPRA1347 hypothetical protein YP_871164.1 KEGG: son:SO0764 hypothetical protein YP_871165.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO0765 threonine efflux protein, putative YP_871166.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO0766 transcriptional regulator, AraC/XylS family YP_871167.1 KEGG: son:SO0766.1 hypothetical protein YP_871168.1 PFAM: Alkaline phosphatase; KEGG: cps:CPS_3933 alkaline phosphatase family protein YP_871169.1 PFAM: Alkaline phosphatase; KEGG: cps:CPS_3932 alkaline phosphatase family protein YP_871170.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO0737 TonB-dependent receptor, putative YP_871171.1 KEGG: son:SO0736 conserved hypothetical protein YP_871172.1 KEGG: mag:amb2980 hypothetical 918 kDa protein Y4LL; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_871173.1 PFAM: Cold-shock protein, DNA-binding; Excalibur domain protein; SMART: Cold shock protein; KEGG: son:SO0733 cold shock domain family protein YP_871174.1 TIGRFAM: conserved repeat domain; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: son:SO4539 serine protease, subtilase family YP_871175.1 KEGG: son:SO0732 hypothetical protein YP_871176.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0726 ABC transporter, ATP-binding protein YP_871177.1 KEGG: neu:NE1275 hypothetical protein YP_871178.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: son:SO0725 catalase/peroxidase HPI YP_871179.1 KEGG: son:SO0721 hypothetical protein YP_871180.1 KEGG: son:SO0720 hypothetical protein YP_871181.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: pae:PA4486 4-carboxymuconolactone decarboxylase YP_871182.1 KEGG: vpa:VP0621 putative nonspecific acid phosphatase precursor YP_871183.1 KEGG: vpa:VPA0690 hypothetical protein YP_871184.1 PFAM: von Willebrand factor, type A; KEGG: vfi:VF1421 transporter YP_871185.1 PFAM: von Willebrand factor, type A; KEGG: vpa:VPA0688 hypothetical protein YP_871186.1 KEGG: vpa:VPA0687 hypothetical protein YP_871187.1 PFAM: protein of unknown function DUF58; KEGG: vpa:VPA0686 hypothetical protein YP_871188.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: vpa:VPA0685 MoxR-related protein YP_871189.1 PFAM: Radical SAM domain protein; KEGG: vpa:VPA0684 putative arylsulfatase regulator YP_871190.1 PFAM: regulatory protein, LysR; KEGG: vvu:VV20150 transcriptional regulator YP_871192.1 PFAM: protein of unknown function DUF88; KEGG: syn:slr1870 hypothetical protein YP_871193.1 KEGG: plu:plu4649 transposase, IS4 family YP_871194.1 KEGG: msu:MS0984 hypothetical protein YP_871195.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_871196.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_871197.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO0702 MATE efflux family protein YP_871198.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0701 transcriptional regulator, LysR family YP_871199.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ppr:PBPRA2319 hypothetical membrane-fusion protein YP_871200.1 PFAM: acriflavin resistance protein; KEGG: ppr:PBPRA2318 hypothetical transporter, AcrB/D/F family YP_871201.1 KEGG: son:SO0699 hypothetical protein YP_871202.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: son:SO0698 FxsA protein YP_871203.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: son:SO0697 periplasmic divalent cation tolerance protein CutA YP_871204.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm YP_871205.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: son:SO0695 glutathione-regulated potassium-efflux system protein KefC, putative YP_871206.1 TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: son:SO0694 galactokinase YP_871207.1 PFAM: Aldose 1-epimerase; KEGG: son:SO0693 aldose 1-epimerase YP_871208.1 KEGG: son:SO0691 hypothetical protein YP_871209.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO0640 alcohol dehydrogenase, zinc-containing YP_871210.1 KEGG: son:SO4013 hypothetical protein YP_871211.1 PFAM: protein kinase; leucine-rich repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; leucine-rich repeat-containing protein, typical subtype; KEGG: son:SO4016 hypothetical protein YP_871212.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: son:SO4017 transglycosylase, Slt family YP_871213.1 KEGG: son:SO4018 hypothetical protein YP_871214.1 Involved in anaerobic NO protection YP_871215.1 Confers resistance to chloramphenicol YP_871216.1 PFAM: peptidase M16 domain protein; KEGG: son:SO4022 peptidase, M16 family YP_871217.1 KEGG: cps:CPS_3019 hypothetical protein YP_871218.1 KEGG: son:SO4028 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n YP_871219.1 PFAM: major facilitator superfamily MFS_1; KEGG: son:SO4029 transporter, putative YP_871220.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: son:SO4030 excinuclease ABC, A subunit YP_871221.1 KEGG: son:SO4031 hypothetical protein YP_871222.1 PFAM: peptidase M20; peptidase M28; KEGG: son:SO4032 hypothetical protein YP_871223.1 PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO4034 ATP-dependent RNA helicase DeaD YP_871224.1 KEGG: son:SO4035 hypothetical protein YP_871225.1 PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_A1849 major facilitator superfamily MFS_1 YP_871226.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ppr:PBPRB1652 putative transcriptional regulator, LysR family YP_871227.1 PFAM: aldo/keto reductase; KEGG: ecj:JW0197 2,5-diketo-D-gluconate reductase B YP_871228.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO4039 hydrolase, haloacid dehalogenase-like family YP_871229.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4040 integral membrane domain protein YP_871230.1 KEGG: son:SO4042 hydratase/decarboxylase family protein YP_871231.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: son:SO4043 TonB domain protein YP_871232.1 KEGG: son:SO4044 hypothetical protein YP_871233.1 KEGG: vvy:VV1902 hypothetical protein YP_871234.1 KEGG: son:SO4047 cytochrome c family protein YP_871235.1 KEGG: son:SO4048 cytochrome c family protein YP_871236.1 KEGG: son:SO4050 hypothetical protein YP_871237.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO4051 HlyD family secretion protein YP_871238.1 PFAM: regulatory protein, MarR; KEGG: son:SO4052 transcriptional regulator, MarR family YP_871239.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4053 methyl-accepting chemotaxis protein YP_871240.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor YP_871241.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways YP_871242.1 TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: son:SO4056 cystathionine gamma-synthase YP_871243.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis YP_871244.1 PFAM: protein of unknown function DUF81; KEGG: son:SO4058 hypothetical protein YP_871245.1 PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4060 polysulfide reductase, subunit C YP_871246.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4061 polysulfide reductase, subunit B YP_871247.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4062 polysulfide reductase, subunit A YP_871248.1 PFAM: pentapeptide repeat protein; KEGG: son:SO4064 mcbg protein, putative YP_871250.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_871251.1 KEGG: dps:DP2995 hypothetical protein YP_871252.1 PFAM: protein of unknown function DUF541; KEGG: son:SO4070 hypothetical protein YP_871253.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit YP_871254.1 PFAM: protein of unknown function DUF331; KEGG: son:SO4073 hypothetical protein YP_871255.1 KEGG: son:SO4075 hypothetical protein YP_871256.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4077 TonB-dependent receptor, putative YP_871257.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: son:SO4078 PmbA protein YP_871258.1 PFAM: protein of unknown function DUF615; KEGG: son:SO4079 hypothetical protein YP_871259.1 PFAM: Ig domain protein, group 1 domain protein; KEGG: son:SO4080 hypothetical protein YP_871260.1 PFAM: amino acid permease-associated region; KEGG: son:SO4081 amino acid permease YP_871261.1 KEGG: ppr:PBPRB1460 hypothetical protein YP_871263.1 KEGG: son:SO4087 conserved hypothetical protein YP_871264.1 PFAM: ABC-2 type transporter; KEGG: son:SO4088 conserved hypothetical protein YP_871265.1 PFAM: secretion protein HlyD family protein; KEGG: son:SO4089 HlyD family secretion protein YP_871266.1 PFAM: outer membrane efflux protein; KEGG: son:SO4090 outer membrane efflux protein YP_871267.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: son:SO4091 TldD protein YP_871268.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: son:SO4092 hydrolase, carbon-nitrogen family YP_871269.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO4093 hypothetical protein YP_871270.1 involved in the processing of the 5'end of 16S rRNA YP_871271.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: son:SO4095 maf protein YP_871272.1 PFAM: Rod shape-determining protein MreD; KEGG: son:SO4096 rod shape-determining protein MreD YP_871273.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_871274.1 functions in MreBCD complex in some organisms YP_871275.1 KEGG: son:SO4100 MSHA biogenesis protein MshQ YP_871276.1 KEGG: son:SO4101 MSHA biogenesis protein MshP YP_871277.1 PFAM: methylation site containing protein; KEGG: son:SO4102 MSHA biogenesis protein MshO YP_871278.1 PFAM: methylation site containing protein; KEGG: son:SO4103 MSHA pilin protein MshD YP_871279.1 PFAM: methylation site containing protein; KEGG: son:SO4104 MSHA pilin protein MshC YP_871280.1 KEGG: plu:plu4649 transposase, IS4 family YP_871281.1 PFAM: methylation site containing protein; KEGG: son:SO4105 MSHA pilin protein MshA YP_871282.1 PFAM: methylation site containing protein; KEGG: son:SO4106 MSHA pilin protein MshB YP_871283.1 KEGG: son:SO4107 hypothetical protein YP_871284.1 PFAM: type II secretion system protein; KEGG: son:SO4108 MSHA biogenesis protein MshG YP_871285.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: son:SO4109 MSHA biogenesis protein MshE YP_871286.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO4110 MSHA biogenesis protein MshN, putative YP_871287.1 KEGG: son:SO4111 MSHA biogenesis protein MshM YP_871288.1 TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB, short N-terminal domain protein; KEGG: son:SO4112 MSHA biogenesis protein MshL YP_871289.1 KEGG: son:SO4113 MSHA biogenesis protein MshK YP_871290.1 KEGG: son:SO4114 MSHA biogenesis protein MshJ YP_871291.1 PFAM: Fimbrial assembly family protein; KEGG: vvu:VV11433 MSHA biogenesis protein MshI YP_871292.1 KEGG: son:SO4114.2 hypothetical biogenesis protein MshI YP_871293.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules YP_871294.1 PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: son:SO4118 malate oxidoreductase, putative YP_871295.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_871296.1 KEGG: son:SO4121 hypothetical protein YP_871297.1 TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO4122 primosomal protein N' YP_871298.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_871299.1 PFAM: Sporulation domain protein; KEGG: son:SO4124 cell division protein FtsN, putative YP_871300.1 KEGG: son:SO4126 hypothetical protein YP_871301.1 PFAM: band 7 protein; KEGG: son:SO4128 SPFH domain/Band 7 family protein YP_871302.1 PFAM: band 7 protein; KEGG: son:SO4129 SPFH domain/Band 7 family protein YP_871303.1 PFAM: protein of unknown function DUF107; KEGG: son:SO4130 hypothetical protein YP_871304.1 KEGG: son:SO4131 hypothetical protein YP_871305.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway YP_871306.1 PFAM: protein of unknown function DUF465; KEGG: son:SO4134 hypothetical protein YP_871307.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: son:SO4136 decarboxylase, pyridoxal-dependent YP_871308.1 KEGG: son:SO4138 hypothetical protein YP_871309.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pca:Pcar_0306 hypothetical protein YP_871310.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO4139 hypothetical protein YP_871311.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4140 transcriptional regulator, LysR family YP_871312.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: son:SO4141 oxidoreductase, short-chain dehydrogenase/reductase family YP_871313.1 KEGG: son:SO4142 cytochrome c family protein YP_871314.1 KEGG: son:SO4143 hypothetical protein YP_871315.1 KEGG: son:SO4144 cytochrome c, putative YP_871316.1 PFAM: Benzoate membrane transport protein; sulphate transporter; KEGG: son:SO4150 transporter, putative YP_871317.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: polysaccharide deacetylase; KEGG: son:SO4151 polysaccharide deacetylase family protein YP_871318.1 PFAM: protein of unknown function DUF1486; KEGG: son:SO4152 hypothetical protein YP_871319.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4154 transcriptional regulator, LysR family YP_871320.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4155 sensor histidine kinase YP_871321.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: son:SO4157 DNA-binding response regulator YP_871322.1 PFAM: methylation site containing protein; KEGG: son:SO4159 hypothetical protein YP_871323.1 heat shock protein involved in degradation of misfolded proteins YP_871324.1 heat shock protein involved in degradation of misfolded proteins YP_871325.1 PFAM: protein of unknown function DUF971; KEGG: son:SO4164 hypothetical protein YP_871326.1 KEGG: pae:PA0571 hypothetical protein YP_871327.1 KEGG: bms:BRA0375 hypothetical protein YP_871328.1 PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: son:SO4169 hypothetical protein YP_871329.1 KEGG: son:SO4170 C factor cell-cell signaling protein YP_871330.1 KEGG: son:SO4171 hypothetical protein YP_871331.1 PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: son:SO4172 DNA-binding response regulator YP_871332.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4173 sensor histidine kinase YP_871333.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO4174 NAD dependent epimerase/dehydratase family protein YP_871334.1 KEGG: son:SO4176 hypothetical protein YP_871335.1 KEGG: son:SO4177 hypothetical protein YP_871336.1 PFAM: pseudouridine synthase; KEGG: rfr:Rfer_1895 pseudouridine synthase YP_871337.1 KEGG: son:SO4182 ATP-dependent protease La (LON) domain protein, putative YP_871338.1 KEGG: hch:HCH_06703 hypothetical protein YP_871339.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ilo:IL2271 outer membrane protein YP_871340.1 PFAM: conserved hypothetical protein 22; KEGG: son:SO4189 hypothetical protein YP_871341.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_871342.1 KEGG: son:SO4191 DedA family protein YP_871343.1 KEGG: son:SO4193 hypothetical protein YP_871344.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO4194 hypothetical protein YP_871345.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO4195 PAP2 family protein YP_871346.1 KEGG: son:SO4196 hypothetical protein YP_871347.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_871348.1 PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: son:SO4198 arginase family protein YP_871349.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4199 ubiquinone/menaquinone biosynthesis methlytransferase UbiE YP_871350.1 PFAM: protein of unknown function DUF1243; KEGG: son:SO4200 conserved hypothetical protein YP_871351.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: son:SO4201 ubiquinone biosynthesis protein AarF YP_871352.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: son:SO4202 Sec-independent protein translocase protein TatA YP_871353.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: son:SO4203 Sec-independent protein translocase protein TatB YP_871354.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: son:SO4204 Sec-independent periplasmic protein translocation protein TatC YP_871355.1 KEGG: son:SO4205 hypothetical protein YP_871356.1 PFAM: TatD-related deoxyribonuclease; KEGG: son:SO4206 hydrolase, TatD family YP_871357.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: son:SO4207 GGDEF domain protein YP_871358.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_871359.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_871360.1 PFAM: peptidase M23B; KEGG: son:SO4212 peptidase, M23/M37 family YP_871361.1 KEGG: son:SO4213 hypothetical protein YP_871362.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_871363.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_871364.1 PFAM: cell division protein FtsA; KEGG: son:SO4216 cell division protein FtsA YP_871365.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: son:SO4217 cell division protein FtsQ YP_871366.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_871367.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_871368.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: son:SO4220 cell division protein FtsW YP_871369.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_871370.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_871371.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO4223 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase YP_871372.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_871373.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: son:SO4225 peptidoglycan synthetase FtsI YP_871374.1 PFAM: cell division protein FtsL; KEGG: son:SO4226 cell division protein FtsL YP_871375.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: son:SO4227 putative S-adenosyl methionine adenyltransferase YP_871376.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_871377.1 KEGG: cps:CPS_0734 hypothetical protein YP_871378.1 PFAM: PepSY-associated TM helix domain protein; KEGG: ilo:IL1226 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF YP_871379.1 KEGG: son:SO4229 hypothetical protein YP_871380.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: son:SO4230 glycerol kinase YP_871381.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: son:SO4232 long-chain fatty acid transport protein YP_871382.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_871383.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_871384.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_871385.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_871386.1 SMART: Tetratricopeptide domain protein; KEGG: son:SO4240 hypothetical protein YP_871387.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO4241 ATP-dependent DNA helicase RecQ YP_871388.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: son:SO4242 hypothetical protein YP_871389.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4243 rarD protein YP_871390.1 KEGG: son:SO4244 hypothetical protein YP_871391.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis YP_871392.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_871393.1 required for 70S ribosome assembly YP_871394.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_871395.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: son:SO4249 DNA/pantothenate metabolism flavoprotein YP_871396.1 catalyzes the formation of dUMP from dUTP YP_871397.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly YP_871398.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; dienelactone hydrolase; KEGG: son:SO4252 prolyl oligopeptidase family protein YP_871399.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_871400.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_871401.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_871402.1 TIGRFAM: conserved hypothetical protein; PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: son:SO4257 conserved hypothetical protein TIGR00255 YP_871403.1 PFAM: phage integrase family protein; KEGG: son:SO4258 site-specific recombinase, phage integrase family YP_871406.1 KEGG: son:SO4260 hypothetical protein YP_871407.1 KEGG: son:SO4261 hypothetical protein YP_871408.1 KEGG: ppr:PBPRC0061 hypothetical protein YP_871409.1 KEGG: vch:VC1764 hypothetical protein YP_871410.1 KEGG: vch:VC1763 chemotaxis protein MotB-related protein YP_871411.1 KEGG: vch:VC1762 hypothetical protein YP_871412.1 PFAM: SNF2-related protein; helicase domain protein; restriction endonuclease; SMART: DEAD/DEAH box helicase domain protein; KEGG: vch:VC1760 helicase, putative YP_871413.1 PFAM: protein of unknown function DUF45; KEGG: son:SO0379 hypothetical protein YP_871414.1 KEGG: son:SO0380 type I restriction-modification system, R subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD/DEAH box helicase domain protein YP_871417.1 PFAM: restriction modification system DNA specificity domain; KEGG: son:SO0382 type I restriction-modification system, S subunit YP_871418.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: noc:Noc_2903 type I restriction-modification system M subunit YP_871419.1 PFAM: HNH endonuclease; KEGG: mca:MCA0503 hypothetical protein YP_871420.1 KEGG: dra:DR1144 hypothetical protein YP_871421.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily YP_871422.1 PFAM: protein of unknown function DUF606; KEGG: son:SO0371 hypothetical protein YP_871423.1 PFAM: protein of unknown function DUF606; KEGG: son:SO0370 hypothetical protein YP_871424.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0369 transcriptional regulator, LysR family YP_871426.1 KEGG: sde:Sde_3690 hypothetical protein YP_871427.1 PFAM: helix-turn-helix domain protein; KEGG: reu:Reut_A0999 helix-turn-helix motif YP_871428.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: son:SO0367 hypothetical protein YP_871429.1 KEGG: son:SO0366 hypothetical protein YP_871430.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0365 hypothetical permeases of the major facilitator superfamily YP_871431.1 PFAM: aminoglycoside phosphotransferase; KEGG: son:SO0364 hypothetical protein YP_871432.1 KEGG: son:SO0363 hypothetical protein YP_871433.1 KEGG: son:SO0362 hypothetical protein YP_871434.1 Essential for recycling GMP and indirectly, cGMP YP_871435.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_871436.1 KEGG: son:SO0359 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region YP_871437.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: son:SO0358 endoribonuclease L-PSP, putative YP_871438.1 PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0355 AMP-binding protein YP_871439.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: son:SO0354 sodium/calcium exchanger YP_871440.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO0353 TPR domain protein YP_871441.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: son:SO0352 sensor histidine kinase, putative YP_871442.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: son:SO0351 DNA-binding response regulator, LuxR family YP_871443.1 KEGG: son:SO0350 hypothetical protein YP_871444.1 KEGG: son:SO0349 magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_871445.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0348 acyltransferase family protein YP_871446.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0347 acyltransferase family protein YP_871447.1 PFAM: protein of unknown function DUF523; KEGG: ppu:PP5158 hypothetical protein YP_871448.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: son:SO0346 transcriptional regulator GntR family YP_871449.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate YP_871450.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity YP_871451.2 Catalyzes the conversion of citrate to isocitrate YP_871452.1 TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: son:SO0342 hypothetical protein YP_871453.1 KEGG: son:SO0341 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_871454.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_871455.1 KEGG: hch:HCH_00871 uncharacterized secreted protein YP_871456.1 PFAM: Modulator of Rho-dependent transcription termination; KEGG: son:SO0339 hypothetical transcriptional antiterminator YP_871457.1 KEGG: son:SO0338 hypothetical protein YP_871458.1 PFAM: Endoribonuclease L-PSP; KEGG: son:SO0337 hypothetical translation initiation inhibitor, YjgF family YP_871459.1 PFAM: Na+/H+ antiporter NhaC; KEGG: son:SO0336 hypothetical Na+/H+ antiporter YP_871460.1 PFAM: protein of unknown function DUF904; KEGG: son:SO0335 hypothetical protein YP_871461.1 PFAM: protein of unknown function DUF1107; KEGG: son:SO0334 hypothetical protein YP_871462.1 PFAM: DSBA oxidoreductase; KEGG: son:SO0333 thiol:disulfide interchange protein DsbA YP_871463.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages YP_871464.1 KEGG: son:SO0331 hypothetical protein YP_871465.1 PFAM: protein of unknown function UPF0061; KEGG: son:SO0330 hypothetical protein YP_871466.1 KEGG: son:SO0329 hypothetical protein YP_871467.1 KEGG: son:SO0326 hypothetical protein YP_871468.1 PFAM: DsrE family protein; KEGG: son:SO0325 DsrE-related protein YP_871469.1 KEGG: son:SO0324 hypothetical protein YP_871470.1 KEGG: son:SO0323 hypothetical protein YP_871471.1 KEGG: son:SO0322 hypothetical protein YP_871472.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sru:SRU_0084 putative transport/efflux transmembrane protein YP_871473.1 PFAM: acriflavin resistance protein; KEGG: sru:SRU_0085 transporter, AcrB/D/F family YP_871474.1 PFAM: regulatory protein, TetR; KEGG: pfo:Pfl_2737 transcriptional regulator, TetR family YP_871475.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mag:amb1345 response regulator YP_871477.1 TIGRFAM: CRISPR-associated protein, Csy3 family; KEGG: noc:Noc_2754 hypothetical protein YP_871478.1 KEGG: vpa:VPA1388 hypothetical protein YP_871479.1 KEGG: vpa:VPA1387 hypothetical protein YP_871480.1 KEGG: mlo:mlr6204 hypothetical protein YP_871481.1 KEGG: mlo:mlr6203 hypothetical protein YP_871483.1 PFAM: helix-turn-helix domain protein; KEGG: ppr:PBPRA1807 putative transcriptional regulator YP_871484.1 KEGG: ppr:PBPRA1806 hypothetical protein YP_871485.1 KEGG: tcx:Tcr_0376 hypothetical protein YP_871486.1 PFAM: Integrase, catalytic region; KEGG: ppr:PBPRA0979 putative transposase YP_871488.1 KEGG: son:SO0321 hypothetical protein YP_871489.1 PFAM: acyltransferase 3; KEGG: son:SO0320 hypothetical protein YP_871490.1 KEGG: son:SO0319 hypothetical protein YP_871491.1 PFAM: protein of unknown function DUF1232; KEGG: son:SO0318 hypothetical protein YP_871492.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: son:SO0317 transcriptional regulator, AraC/XylS family YP_871493.1 TIGRFAM: YbhB and YbcL; PFAM: PEBP family protein; KEGG: son:SO0316 hypothetical phosphatidylethanolamine-binding protein YP_871494.1 KEGG: vch:VCA1065 hypothetical protein YP_871495.1 PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: son:SO0314 ornithine decarboxylase, inducible YP_871496.1 catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system YP_871497.1 PFAM: porin, Gram-negative type; KEGG: son:SO0312 outer membrane porin, putative YP_871498.1 PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: son:SO0311 hypothetical Fe-S oxidoreductase YP_871499.1 KEGG: son:SO0309 hypothetical protein YP_871500.1 PFAM: protein of unknown function DUF1212; KEGG: son:SO0308 hypothetical protein YP_871501.1 KEGG: son:SO0306 hypothetical protein YP_871502.1 KEGG: son:SO0302 hypothetical protein YP_871503.1 TIGRFAM: Protein of unknown function UPF0011; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO0301 hypothetical methyltransferase YP_871504.1 PFAM: LppC family lipoprotein; KEGG: son:SO0300 lipoprotein, putative YP_871505.1 PFAM: protein of unknown function UPF0102; KEGG: son:SO0299 predicted endonuclease YP_871506.1 TIGRFAM: phosphoheptose isomerase; KEGG: son:SO0298 phosphoheptose isomerase YP_871507.1 PFAM: transport-associated; KEGG: son:SO0297 lipoprotein, putative YP_871508.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO0296 integral membrane domain protein YP_871509.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0295 transcriptional regulator, LysR family YP_871510.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_871511.1 TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0293 phosphoglycolate phosphatase YP_871512.1 PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'-phosphate decarboxylase; KEGG: son:SO0292 ribulose-phosphate 3-epimerase YP_871513.1 KEGG: son:SO0291 hypothetical protein YP_871514.1 KEGG: son:SO0290 hypothetical protein YP_871515.1 TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: son:SO0289 DNA adenine methylase YP_871516.1 PFAM: Sporulation domain protein; SMART: AAA ATPase; KEGG: son:SO0288 DamX domain protein YP_871517.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_871518.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_871519.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain protein; KEGG: son:SO0285 type IV pilus biogenesis protein PilQ YP_871520.1 PFAM: Pilus assembly protein, PilQ; KEGG: son:SO0284 type IV pilus biogenesis protein PilP YP_871521.1 PFAM: Pilus assembly protein, PilO; KEGG: son:SO0283 type IV pilus biogenesis protein PilO YP_871522.1 PFAM: Fimbrial assembly family protein; KEGG: son:SO0282 type IV pilus biogenesis protein PilN YP_871523.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: son:SO0281 type IV pilus biogenesis protein PilM YP_871524.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: son:SO0280 penicillin-binding protein 1A YP_871525.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_871526.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_871527.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_871528.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_871529.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_871530.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_871531.1 PFAM: protein of unknown function DUF1439; KEGG: son:SO0273 hypothetical protein YP_871532.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: son:SO0272 competence/damage-inducible protein CinA YP_871533.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: son:SO4502 hypothetical protein YP_871534.1 KEGG: son:SO4503 formate dehydrogenase accessory protein FdhD, putative YP_871535.1 KEGG: son:SO4504 hypothetical protein YP_871536.1 KEGG: son:SO4505 hypothetical protein YP_871537.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4506 iron-sulfur cluster-binding protein YP_871538.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: son:SO4507 TorA specific chaperone, putative YP_871539.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: son:SO4508 hypothetical protein YP_871540.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4509 formate dehydrogenase, alpha subunit YP_871541.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4510 formate dehydrogenase, iron-sulfur subunit YP_871542.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO4511 formate dehydrogenase, C subunit, putative YP_871543.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: son:SO4512 hypothetical protein YP_871544.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4513 formate dehydrogenase, alpha subunit YP_871545.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4514 formate dehydrogenase, iron-sulfur subunit YP_871546.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO4515 formate dehydrogenase, C subunit, putative YP_871547.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4516 ferric vibriobactin receptor YP_871548.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppr:PBPRB0028 hypothetical methyl-accepting chemotaxisprotein YP_871549.1 PFAM: Bile acid:sodium symporter; KEGG: son:SO4519 sodium-dependent transporter YP_871550.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_871551.1 KEGG: son:SO4521 hypothetical protein YP_871552.1 KEGG: son:SO4522 hypothetical protein YP_871553.1 IrgA; binds ferric enterobactin; irgA gene expression is repressed by Fur and induced by the divergently transcribed upstream gene irgB; outer membrane protein; involved in iron metabolism YP_871554.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4524 transcriptional regulator, LysR family YP_871555.1 PFAM: Patatin; KEGG: son:SO4525 hypothetical protein YP_871556.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4525.1 hypothetical transcriptional regulator, LysR family YP_871557.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4527 integral membrane domain protein YP_871558.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO4529 RNA methyltransferase, TrmH family, group 2 YP_871560.1 KEGG: son:SO4068 hypothetical protein YP_871561.1 KEGG: son:SO4535 hypothetical protein YP_871562.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: son:SO4537 peptidase, putative YP_871563.1 PFAM: peptidase M16 domain protein; KEGG: ppr:PBPRB1337 hypothetical protein YP_871564.1 PFAM: peptidase M16 domain protein; KEGG: son:SO4537.2 hypothetical Zn-dependent peptidase YP_871565.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ilo:IL0586 metal-dependent hydrolase of the aminoacylase-2/carboxypeptidase-Z family YP_871566.1 KEGG: rfr:Rfer_3046 transcriptional factor YP_871567.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: noc:Noc_2855 cell division protein FtsZ YP_871568.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4550 methyltransferase domain protein YP_871569.1 KEGG: son:SO4551 hypothetical protein YP_871570.1 KEGG: son:SO4552 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_871571.1 PFAM: DTW domain containing protein; KEGG: son:SO4554 hypothetical protein YP_871572.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO4555 drug resistance transporter, Bcr/CflA family protein YP_871573.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4556 transcriptional regulator, LysR family YP_871574.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: son:SO4557 methyl-accepting chemotaxis protein YP_871575.1 KEGG: son:SO4558 hypothetical protein YP_871576.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO4559 hypothetical protein YP_871577.1 KEGG: son:SO4560 hypothetical protein YP_871578.1 KEGG: son:SO4561 hypothetical protein YP_871579.1 PFAM: protein of unknown function DUF1332; KEGG: son:SO4562 hypothetical protein YP_871580.1 KEGG: son:SO4563 hypothetical protein YP_871581.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: son:SO4564 TonB2 protein, putative YP_871582.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function YP_871583.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: son:SO4567 transcriptional regulator, AsnC family YP_871584.1 PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4568 formate-dependent nitrite reductase, nrfD protein YP_871585.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: vvy:VV1252 formate-dependent nitrite reductase complex, Fe-S protein YP_871586.1 KEGG: sfx:S3598 formate-dependent nitrite reductase YP_871588.1 PFAM: regulatory protein, LysR; KEGG: son:SO4571 transcriptional regulator, LysR family YP_871589.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis YP_871590.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO4574 hydrolase, alpha/beta fold family YP_871591.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate YP_871592.1 TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO4576 O-succinylbenzoic acid--CoA ligase YP_871593.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_871594.1 PFAM: protein of unknown function DUF214; KEGG: son:SO4584 cell division ABC transporter, permease protein FtsX YP_871595.1 KEGG: son:SO4585 cell division ABC transporter, ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase YP_871596.1 KEGG: son:SO4586 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase YP_871597.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: son:SO4587 putative methylase YP_871598.1 PFAM: protein of unknown function DUF1145; KEGG: son:SO4588 hypothetical protein YP_871599.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: son:SO4589 transcriptional regulator, AraC family YP_871600.1 PFAM: isochorismatase hydrolase; KEGG: son:SO4590 isochorismatase family protein YP_871601.1 PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO4591 tetraheme cytochrome c YP_871602.1 KEGG: son:SO4592 hypothetical protein YP_871603.1 KEGG: son:SO4593 hypothetical protein YP_871604.1 KEGG: son:SO4594 hypothetical protein YP_871605.1 KEGG: son:SO4596 copper-transporting ATPase domain protein YP_871606.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO4597 heavy metal efflux system protein, putative YP_871607.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: son:SOA0153 heavy metal efflux pump, CzcA family YP_871608.1 PFAM: ribonuclease T2; KEGG: son:SO4599 ribonuclease, T2 family YP_871609.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: vvy:VV1004 methyl-accepting chemotaxis protein YP_871610.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO4600 antigen, putative YP_871611.1 TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; KEGG: son:SO4601 tryptophan-specific transport protein YP_871612.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA YP_871613.1 Represses a number of genes involved in the response to DNA damage YP_871614.1 KEGG: son:SO4604 hypothetical protein YP_871615.1 PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: son:SO4606 cytochrome c oxidase, subunit II YP_871616.1 PFAM: cytochrome c oxidase, subunit I; KEGG: son:SO4607 cytochrome c oxidase, subunit I YP_871617.1 involved in the insertion of copper into subunit I of cytochrome C oxidase YP_871618.1 PFAM: cytochrome c oxidase, subunit III; KEGG: son:SO4609 cytochrome c oxidase subunit III YP_871619.1 KEGG: son:SO4611 hypothetical protein YP_871620.1 KEGG: son:SO4612 hypothetical protein YP_871621.1 PFAM: cytochrome oxidase assembly; KEGG: son:SO4613 cytochrome oxidase assembly protein, putative YP_871622.1 converts protoheme IX and farnesyl diphosphate to heme O YP_871623.1 PFAM: alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen; electron transport protein SCO1/SenC; KEGG: son:SO4615 SCO1/SenC family protein YP_871624.1 PFAM: polysaccharide deacetylase; KEGG: son:SO4616 polysaccharide deacetylase family protein YP_871625.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO4617 DNA-damage-inducible protein F YP_871626.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source YP_871627.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO4620 fumarate reductase, flavoprotein subunit precursor YP_871628.1 KEGG: son:SO4621 hypothetical protein YP_871629.1 PFAM: histidine kinase A domain protein domain protein; KEGG: son:SO4622 sensor histidine kinase YP_871630.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4623 DNA-binding response regulator YP_871631.1 PFAM: regulatory protein, LuxR; KEGG: son:SO4624 transcriptional regulator, LuxR family YP_871632.1 KEGG: son:SO4625 competence protein ComF YP_871633.1 TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: son:SO4626 bioH protein YP_871634.1 KEGG: son:SO4627 hypothetical protein YP_871635.1 PFAM: sulfatase; KEGG: son:SO4628 sulfatase YP_871636.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: son:SO4629 hypothetical protein YP_871637.1 TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: son:SO4631 transcription elongation factor GreB YP_871638.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: cvi:CV3504 probable two-component response regulator YP_871639.1 KEGG: cvi:CV1621 probable sensor/response regulatory hybrid protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_871640.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation YP_871641.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR YP_871642.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4635 methyl-accepting chemotaxis protein YP_871643.1 PFAM: alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen; Redoxin domain protein; KEGG: son:SO4640 antioxidant, AhpC/Tsa family YP_871646.1 KEGG: son:SO4645 hypothetical protein YP_871647.1 PFAM: Propeptide, PepSY amd peptidase M4; KEGG: son:SO4646 hypothetical protein YP_871648.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4647 DNA-binding response regulator YP_871649.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4648 sensor histidine kinase YP_871650.1 KEGG: son:SO4649 hypothetical protein YP_871651.1 KEGG: son:SO4656 hypothetical protein YP_871652.1 KEGG: son:SO4656.2 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_871654.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II; COX aromatic rich domain protein; KEGG: pha:PSHAa2231 ubiquinol oxidase polypeptide II (cytochrome o subunit 2) (oxidase BO(3) subunit 2) (cytochrome o ubiquinol oxidase subunit 2) (ubiquinol oxidase chain B) YP_871655.1 PFAM: cytochrome c oxidase, subunit I; KEGG: pha:PSHAa2230 ubiquinol oxidase polypeptide I (cytochrome o subunit 1) (oxidase BO(3) subunit 1) (cytochrome o ubiquinol oxidase subunit 1) (ubiquinol oxidase chain A) YP_871656.1 PFAM: cytochrome c oxidase, subunit III; KEGG: pha:PSHAa2229 cytochrome o ubiquinol oxidase subunit III (ubiquinol oxidase chain C) YP_871657.1 PFAM: cytochrome C oxidase subunit IV; KEGG: pha:PSHAa2228 cytochrome o ubiquinol oxidase protein (ubiquinol oxidase chain D) YP_871658.1 converts protoheme IX and farnesyl diphosphate to heme O YP_871659.1 PFAM: Amidohydrolase 3; KEGG: son:SOA0100 hypothetical protein YP_871660.1 PFAM: protein of unknown function DUF548; KEGG: son:SO4658 hypothetical protein YP_871661.1 PFAM: protein of unknown function DUF519; KEGG: son:SO4659 hypothetical protein YP_871662.1 PFAM: Lytic transglycosylase, catalytic; KEGG: son:SO4660 transglycosylase SLT domain protein YP_871663.1 KEGG: son:SO4661 hypothetical protein YP_871664.1 PFAM: LemA family protein; KEGG: son:SO4662 lemA protein YP_871665.1 PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; short chain fatty acid transporter; KEGG: ppr:PBPRA0142 putative efflux pump component MtrF YP_871668.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: son:SO4692 AcrB/AcrD/AcrF family protein YP_871669.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO4693 multidrug resistance protein, AcrA/AcrE family YP_871670.1 TIGRFAM: conserved hypothetical protein; KEGG: son:SO4694 hypothetical protein YP_871671.1 KEGG: son:SO4696 hypothetical 3-methyladenine DNA glycosylase YP_871672.1 PFAM: Glutathione S-transferase, N-terminal domain protein; KEGG: son:SO4697 glutathione S-transferase YP_871673.1 KEGG: son:SO4698 hypothetical protein YP_871674.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO4699 oligopeptidase A YP_871675.1 KEGG: son:SO4700 hypothetical protein YP_871676.1 KEGG: son:SO4701 hypothetical protein YP_871677.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense YP_871678.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: cps:CPS_3463 proline/sodium symporter YP_871679.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_871680.1 TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: pha:PSHAa0280 gamma-glutamyl phosphate reductase YP_871681.1 PFAM: KAP P-loop domain protein; KEGG: vpa:VP2900 hypothetical protein YP_871682.1 PFAM: helix-turn-helix domain protein; KEGG: son:SO4705 transcriptional regulator, putative YP_871683.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_871684.1 PFAM: conserved hypothetical protein 698; KEGG: son:SO4708 hypothetical protein YP_871685.1 KEGG: son:SO4709 hypothetical protein YP_871686.1 SMART: regulatory protein, LuxR; KEGG: cps:CPS_1945 hypothetical protein YP_871687.1 KEGG: ilo:IL0061 outer membrane protein YP_871688.1 KEGG: cps:CPS_1944 hypothetical protein YP_871689.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: cps:CPS_1943 cation efflux system protein CzcA YP_871690.1 KEGG: cps:CPS_1942 hypothetical protein YP_871691.1 KEGG: son:SO4710 hypothetical protein YP_871692.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO4711 HD domain protein YP_871693.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO4712 ABC transporter, ATP-binding protein, putative YP_871694.1 TIGRFAM: isochorismate synthases; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: son:SO4713 menaquinone-specific isochorismate synthase, putative YP_871695.1 KEGG: son:SO4714 hypothetical protein YP_871696.1 TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: son:SO4715 hypothetical protein YP_871697.1 KEGG: son:SO4716 acetyltransferase, GNAT family YP_871698.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4717 sensor histidine kinase YP_871699.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO4718 sigma-54 dependent response regulator YP_871700.1 PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO4719 putative sulfate transport system substrate-binding protein YP_871701.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4720 ABC transporter, permease protein YP_871702.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO4721 ABC transporter, ATP-binding protein YP_871703.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: son:SO4722 molybdopterin-guanine dinucleotide biosynthesis protein YP_871704.1 TIGRFAM: molybdenum cofactor synthesis domain; molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin binding domain; molybdopterin-guanine dinucleotide biosynthesis MobB region; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: son:SO4723 molybdopterin biosynthesis MoeA protein, putative YP_871705.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_871706.1 KEGG: son:SO4725 hypothetical protein YP_871707.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_871708.1 PFAM: glycosyl transferase, family 39; KEGG: son:SO4690 hypothetical protein YP_871709.1 KEGG: son:SO4689 hypothetical protein YP_871710.1 PFAM: glycosyl transferase, family 2; KEGG: son:SO4688 glycosyl transferase, group 2 family protein YP_871711.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: son:SO4687 UDP-glucose 6-dehydrogenase YP_871712.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO4686 NAD dependent epimerase/dehydratase family protein YP_871713.1 KEGG: son:SO4685 hypothetical protein YP_871714.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_871716.1 PFAM: glycosyl transferase, group 1; KEGG: son:SO4682 glycosyl transferase, group 1 family protein YP_871717.1 TIGRFAM: HAD-superfamily phosphatase, subfamily IIIC; capsule biosynthesis phosphatase; KEGG: vch:VC0232 hypothetical protein YP_871718.1 KEGG: vch:VC0231 hypothetical protein YP_871719.1 KEGG: vch:VC0230 hypothetical protein YP_871720.1 KEGG: vch:VC0229 hypothetical protein YP_871721.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: son:SO4680 hypothetical protein YP_871722.1 PFAM: glycosyl transferase, group 1; KEGG: son:SO4679 glycosyl transferase, group 1 family protein YP_871723.1 PFAM: glycosyl transferase, family 9; KEGG: son:SO4678 heptosyl transferase, glycosyltransferase family 9 protein YP_871724.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position YP_871725.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: son:SO4676 3-deoxy-D-manno-octulosonic-acid (KDO) transferase YP_871726.1 PFAM: regulatory protein, TetR; KEGG: son:SO4675 transcriptional regulator, TetR family YP_871727.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_871728.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism YP_871729.1 PFAM: Rhodanese domain protein; KEGG: son:SO4672 glpE protein YP_871730.1 PFAM: Rhomboid family protein; KEGG: son:SO4671 glpG protein YP_871731.1 PFAM: ThiJ/PfpI domain protein; KEGG: son:SO4670 enhancing lycopene biosynthesis protein YP_871732.1 KEGG: son:SO4669 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2 YP_871733.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_871734.1 PFAM: cytochrome c, class I; KEGG: son:SO4666 cytochrome c YP_871736.1 KEGG: son:SO4727 hypothetical protein YP_871737.1 PFAM: protein of unknown function DUF414; KEGG: son:SO4728 hypothetical protein YP_871738.1 KEGG: son:SO4729 hypothetical protein YP_871739.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_871740.1 catalyzes the formation of inosine from adenosine YP_871741.1 PFAM: protein of unknown function DUF885; KEGG: son:SO4732 hypothetical protein YP_871742.1 PFAM: alpha/beta hydrolase fold; KEGG: son:SO4733 lysophospholipase L2 YP_871743.1 KEGG: son:SO4734 sensory box protein; TIGRFAM: PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_871744.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4737 iron-sulfur cluster-binding protein YP_871745.1 KEGG: son:SO4738 hypothetical protein YP_871746.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA YP_871747.1 KEGG: son:SO4740 hypothetical protein YP_871748.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_871749.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: son:SO4742 transcriptional regulator, DeoR family YP_871750.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4743 TonB-dependent receptor, putative YP_871751.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: son:SO4745 glucosamine-1-phosphate N-acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase YP_871752.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_871753.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_871754.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_871755.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_871756.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_871757.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_871758.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_871759.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_871760.1 PFAM: ATP synthase I chain; KEGG: son:SO4754 ATP synthase protein I YP_871761.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: son:SO4755 ParB family protein YP_871762.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO4756 ParA family protein