-- dump date 20120504_161438 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 94122000001 SEQ_END SEQ_END NC_008573.1 278942 278942 DR NC_008573.1; contig end 278942..278942 Shewanella sp. ANA-3 94122000002 SEQ_END SEQ_END NC_008577.1 4972204 4972204 DR NC_008577.1; contig end 4972204..4972204 Shewanella sp. ANA-3 YP_863656.1 CDS Shewana3_4140 NC_008573.1 278592 885 R KEGG: rfr:Rfer_4209 hypothetical protein; hypothetical protein complement(join(278592..278942,1..885)) Shewanella sp. ANA-3 4475934 YP_863657.1 CDS Shewana3_4141 NC_008573.1 1030 1248 D KEGG: sbo:SBO_P096 putative transposase; putative transposase 1030..1248 Shewanella sp. ANA-3 4475917 YP_863658.1 CDS Shewana3_4142 NC_008573.1 1491 2471 R PFAM: transposase, IS4 family protein; KEGG: ecj:JW1972 IS5 transposase and trans-activator; IS4 family transposase complement(1491..2471) Shewanella sp. ANA-3 4475918 YP_863659.1 CDS Shewana3_4143 NC_008573.1 2555 2836 R KEGG: sde:Sde_1936 hypothetical protein; hypothetical protein complement(2555..2836) Shewanella sp. ANA-3 4475919 YP_863660.1 CDS Shewana3_4144 NC_008573.1 2880 3239 R KEGG: ilo:IL1217 likely secreted protein containing plastocyanin domain; plastocyanin domain-containing protein complement(2880..3239) Shewanella sp. ANA-3 4475920 YP_863661.1 CDS Shewana3_4145 NC_008573.1 3276 5612 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: ilo:IL1218 cation transport ATPase; copper-translocating P-type ATPase complement(3276..5612) Shewanella sp. ANA-3 4475921 YP_863662.1 CDS Shewana3_4146 NC_008573.1 5788 6504 R PFAM: regulatory protein GntR, HTH; KEGG: pca:Pcar_2500 transcriptional regulator-like; GntR family transcriptional regulator complement(5788..6504) Shewanella sp. ANA-3 4475922 YP_863663.1 CDS Shewana3_4147 NC_008573.1 6556 7779 R PFAM: outer membrane porin; KEGG: wsu:WS0983 hypothetical protein; outer membrane porin complement(6556..7779) Shewanella sp. ANA-3 4475923 YP_863664.1 CDS Shewana3_4148 NC_008573.1 8181 8582 R KEGG: son:SO4593 hypothetical protein; hypothetical protein complement(8181..8582) Shewanella sp. ANA-3 4475924 YP_863665.1 CDS Shewana3_4149 NC_008573.1 10342 11445 D TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: stm:STM2599 Gifsy-1 prophage; IS605 family transposase OrfB 10342..11445 Shewanella sp. ANA-3 4475925 YP_863666.1 CDS Shewana3_4150 NC_008573.1 11576 11842 R hypothetical protein complement(11576..11842) Shewanella sp. ANA-3 4475926 YP_863667.1 CDS Shewana3_4151 NC_008573.1 12218 12505 R KEGG: noc:Noc_2766 hypothetical protein; hypothetical protein complement(12218..12505) Shewanella sp. ANA-3 4475927 YP_863668.1 CDS Shewana3_4152 NC_008573.1 12547 12888 R KEGG: ilo:IL1241 lipoprotein signal peptidase; lipoprotein signal peptidase-like protein complement(12547..12888) Shewanella sp. ANA-3 4475928 YP_863669.1 CDS Shewana3_4153 NC_008573.1 12893 13294 R PFAM: nitrogen regulatory protein P-II; KEGG: dar:Daro_2625 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(12893..13294) Shewanella sp. ANA-3 4475929 YP_863670.1 CDS Shewana3_4154 NC_008573.1 13291 16431 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: ccr:CC2390 AcrB/AcrD/AcrF family protein; CzcA family heavy metal efflux protein complement(13291..16431) Shewanella sp. ANA-3 4475930 YP_863671.1 CDS Shewana3_4155 NC_008573.1 16506 17447 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rpa:RPA2055 possible RND divalent metal cation efflux membrane fusion protein CzcB precursor; RND family efflux transporter MFP subunit complement(16506..17447) Shewanella sp. ANA-3 4475931 YP_863672.1 CDS Shewana3_4156 NC_008573.1 17444 18784 R PFAM: outer membrane efflux protein; KEGG: cps:CPS_1957 putative RND efflux system protein; outer membrane efflux protein complement(17444..18784) Shewanella sp. ANA-3 4475932 YP_863673.1 CDS Shewana3_4157 NC_008573.1 19416 20315 R KEGG: ilo:IL1242 Co/Zn/Cd efflux system component; Co/Zn/Cd efflux system component complement(19416..20315) Shewanella sp. ANA-3 4475933 YP_863674.1 CDS Shewana3_4158 NC_008573.1 20393 20800 D TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: sde:Sde_1961 putative transcriptional regulator, MerR family; MerR family transcriptional regulator 20393..20800 Shewanella sp. ANA-3 4475899 YP_863675.1 CDS Shewana3_4159 NC_008573.1 21137 21307 D KEGG: vpa:VP1788 putative transposase; putative transposase 21137..21307 Shewanella sp. ANA-3 4475900 YP_863676.1 CDS Shewana3_4160 NC_008573.1 21935 22345 D KEGG: vvu:VV20180 S-adenosylhomocysteine hydrolase; S-adenosylhomocysteine hydrolase 21935..22345 Shewanella sp. ANA-3 4475901 YP_863677.1 CDS Shewana3_4161 NC_008573.1 22342 23283 D KEGG: pha:PSHAb0102 hypothetical protein; hypothetical protein 22342..23283 Shewanella sp. ANA-3 4475902 YP_863678.1 CDS Shewana3_4162 NC_008573.1 23291 25915 D TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: yps:YPTB0537 putative type I restriction-modification system, methyltransferase subunit (N-6 DNA methylase); type I restriction-modification system, M subunit 23291..25915 Shewanella sp. ANA-3 4475903 YP_863679.1 CDS Shewana3_4163 NC_008573.1 25917 27134 D PFAM: restriction modification system DNA specificity domain; KEGG: lsl:LSL_0915 type I restriction-modification system specificity subunit; restriction modification system DNA specificity subunit 25917..27134 Shewanella sp. ANA-3 4475904 YP_863680.1 CDS Shewana3_4164 NC_008573.1 27306 30536 D KEGG: yps:YPTB0535 putative type I restriction enzyme, R subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD/DEAH box helicase domain protein; HsdR family type I site-specific deoxyribonuclease 27306..30536 Shewanella sp. ANA-3 4475905 YP_863681.1 CDS Shewana3_4165 NC_008573.1 30965 31375 R hypothetical protein complement(30965..31375) Shewanella sp. ANA-3 4475906 YP_863682.1 CDS Shewana3_4166 NC_008573.1 31405 32007 R KEGG: ppr:PBPRC0031 hypothetical protein; hypothetical protein complement(31405..32007) Shewanella sp. ANA-3 4475907 YP_863683.1 CDS Shewana3_4167 NC_008573.1 32102 32974 R binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein complement(32102..32974) Shewanella sp. ANA-3 4475908 YP_863684.1 CDS Shewana3_4168 NC_008573.1 33318 34007 R hypothetical protein complement(33318..34007) Shewanella sp. ANA-3 4475909 YP_863685.1 CDS Shewana3_4169 NC_008573.1 34151 35299 D KEGG: vvy:VVP58 hypothetical protein; hypothetical protein 34151..35299 Shewanella sp. ANA-3 4475910 YP_863686.1 CDS Shewana3_4170 NC_008573.1 35699 36355 D KEGG: cac:CAC2440 predicted membrane protein; hypothetical protein 35699..36355 Shewanella sp. ANA-3 4475911 YP_863687.1 CDS Shewana3_4171 NC_008573.1 36438 37784 D KEGG: eba:ebD63 hypothetical protein; hypothetical protein 36438..37784 Shewanella sp. ANA-3 4475912 YP_863688.1 CDS Shewana3_4172 NC_008573.1 38365 39615 R PFAM: UMUC domain protein DNA-repair protein; KEGG: son:SOA0012 umuC protein; DNA-directed DNA polymerase complement(38365..39615) Shewanella sp. ANA-3 4475913 YP_863689.1 CDS Shewana3_4173 NC_008573.1 39612 40346 R PFAM: peptidase S24, S26A and S26B; KEGG: cps:CPS_2683 UmuD protein; putative prophage repressor complement(39612..40346) Shewanella sp. ANA-3 4475914 YP_863690.1 CDS Shewana3_4174 NC_008573.1 40552 40911 R hypothetical protein complement(40552..40911) Shewanella sp. ANA-3 4475915 YP_863691.1 CDS Shewana3_4175 NC_008573.1 41152 42258 D KEGG: lma:LmjF34.0690 hypothetical protein, conserved; hypothetical protein 41152..42258 Shewanella sp. ANA-3 4475916 YP_863692.1 CDS Shewana3_4176 NC_008573.1 42673 43521 R hypothetical protein complement(42673..43521) Shewanella sp. ANA-3 4475882 YP_863693.1 CDS Shewana3_4177 NC_008573.1 43496 44170 R KEGG: sde:Sde_3270 CBS; CBS domain-containing protein complement(43496..44170) Shewanella sp. ANA-3 4475883 YP_863694.1 CDS Shewana3_4178 NC_008573.1 44721 45335 R KEGG: cps:CPS_1634 hypothetical protein; hypothetical protein complement(44721..45335) Shewanella sp. ANA-3 4475884 YP_863695.1 CDS Shewana3_4179 NC_008573.1 45611 46507 R hypothetical protein complement(45611..46507) Shewanella sp. ANA-3 4475885 YP_863696.1 CDS Shewana3_4180 NC_008573.1 46518 47165 R KEGG: bbr:BB2192 phage-related DNA recombination protein; hypothetical protein complement(46518..47165) Shewanella sp. ANA-3 4475886 YP_863697.1 CDS Shewana3_4181 NC_008573.1 47179 47901 R KEGG: bbr:BB2192 phage-related DNA recombination protein; hypothetical protein complement(47179..47901) Shewanella sp. ANA-3 4475887 YP_863698.1 CDS Shewana3_4182 NC_008573.1 48256 48957 R hypothetical protein complement(48256..48957) Shewanella sp. ANA-3 4475888 YP_863699.1 CDS Shewana3_4183 NC_008573.1 49029 49559 D PFAM: Lytic transglycosylase, catalytic; KEGG: sty:HCM1.259 hypothetical protein; lytic transglycosylase, catalytic 49029..49559 Shewanella sp. ANA-3 4475889 YP_863700.1 CDS Shewana3_4184 NC_008573.1 49642 50745 R TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: stm:STM2599 Gifsy-1 prophage; IS605 family transposase OrfB complement(49642..50745) Shewanella sp. ANA-3 4475890 YP_863701.1 CDS Shewana3_4185 NC_008573.1 50898 51413 R hypothetical protein complement(50898..51413) Shewanella sp. ANA-3 4475891 YP_863702.1 CDS Shewana3_4186 NC_008573.1 51416 51769 R PFAM: membrane-bound metal-dependent hydrolase; KEGG: mag:amb4172 predicted membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase complement(51416..51769) Shewanella sp. ANA-3 4475892 YP_863703.1 CDS Shewana3_4187 NC_008573.1 51874 52488 R KEGG: mag:amb3058 hypothetical protein; hypothetical protein complement(51874..52488) Shewanella sp. ANA-3 4475893 YP_863704.1 CDS Shewana3_4188 NC_008573.1 52776 53429 D hypothetical protein 52776..53429 Shewanella sp. ANA-3 4475894 YP_863705.1 CDS Shewana3_4189 NC_008573.1 53496 54005 R hypothetical protein complement(53496..54005) Shewanella sp. ANA-3 4475895 YP_863706.1 CDS Shewana3_4190 NC_008573.1 54097 54537 R hypothetical protein complement(54097..54537) Shewanella sp. ANA-3 4475896 YP_863707.1 CDS Shewana3_4191 NC_008573.1 54609 54833 R PFAM: ferredoxin; KEGG: msu:MS0969 Fdx protein; ferredoxin complement(54609..54833) Shewanella sp. ANA-3 4475897 YP_863708.1 CDS Shewana3_4192 NC_008573.1 55345 55773 R hypothetical protein complement(55345..55773) Shewanella sp. ANA-3 4475898 YP_863709.1 CDS Shewana3_4193 NC_008573.1 55904 56452 R hypothetical protein complement(55904..56452) Shewanella sp. ANA-3 4475864 YP_863710.1 CDS Shewana3_4194 NC_008573.1 56546 57919 R PFAM: C-5 cytosine-specific DNA methylase; KEGG: psb:Psyr_1433 C-5 cytosine-specific DNA methylase; C-5 cytosine-specific DNA methylase complement(56546..57919) Shewanella sp. ANA-3 4475865 YP_863711.1 CDS Shewana3_4195 NC_008573.1 58048 58335 R hypothetical protein complement(58048..58335) Shewanella sp. ANA-3 4475866 YP_863712.1 CDS Shewana3_4196 NC_008573.1 58457 58891 R hypothetical protein complement(58457..58891) Shewanella sp. ANA-3 4475867 YP_863713.1 CDS Shewana3_4197 NC_008573.1 59003 59368 R KEGG: eba:p1B83 INTERPRO: probable CcdB protein, possible toxin of addiction system; putative toxin of addiction system complement(59003..59368) Shewanella sp. ANA-3 4475868 YP_863714.1 CDS Shewana3_4198 NC_008573.1 59875 60306 R hypothetical protein complement(59875..60306) Shewanella sp. ANA-3 4475869 YP_863715.1 CDS Shewana3_4199 NC_008573.1 61082 62101 R KEGG: sty:HCM1.117 hypothetical protein; hypothetical protein complement(61082..62101) Shewanella sp. ANA-3 4475870 YP_863716.1 CDS Shewana3_4200 NC_008573.1 62291 63763 R KEGG: eba:p1B95 hypothetical protein; hypothetical protein complement(62291..63763) Shewanella sp. ANA-3 4475871 YP_863717.1 CDS Shewana3_4201 NC_008573.1 63987 64961 R PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: dde:Dde_3433 ATPase; ATPase complement(63987..64961) Shewanella sp. ANA-3 4475872 YP_863718.1 CDS Shewana3_4202 NC_008573.1 65058 66125 R KEGG: dde:Dde_2921 hypothetical protein; hypothetical protein complement(65058..66125) Shewanella sp. ANA-3 4475873 YP_863719.1 CDS Shewana3_4203 NC_008573.1 66304 66699 R hypothetical protein complement(66304..66699) Shewanella sp. ANA-3 4475874 YP_863720.1 CDS Shewana3_4204 NC_008573.1 68453 70252 R PFAM: UvrD/REP helicase; KEGG: sty:HCM1.107 putative DNA helicase; UvrD/REP helicase complement(68453..70252) Shewanella sp. ANA-3 4475875 YP_863721.1 CDS Shewana3_4205 NC_008573.1 70404 71261 D hypothetical protein 70404..71261 Shewanella sp. ANA-3 4475876 YP_863722.1 CDS Shewana3_4206 NC_008573.1 71303 75577 R KEGG: sty:HCM1.101 plasmid transfer protein; hypothetical protein complement(71303..75577) Shewanella sp. ANA-3 4475877 YP_863723.1 CDS Shewana3_4207 NC_008573.1 75580 76659 R PFAM: TraU family protein; KEGG: sty:HCM1.100 plasmid transfer protein; TraU family protein complement(75580..76659) Shewanella sp. ANA-3 4475878 YP_863724.1 CDS Shewana3_4208 NC_008573.1 76728 78023 R KEGG: sty:HCM1.99 plasmid transfer protein; hypothetical protein complement(76728..78023) Shewanella sp. ANA-3 4475879 YP_863725.1 CDS Shewana3_4209 NC_008573.1 78004 78510 R KEGG: sty:HCM1.98 putative pilin maturation protein; Type IV secretory pathway protease TraF-like protein complement(78004..78510) Shewanella sp. ANA-3 4475880 YP_863726.1 CDS Shewana3_4210 NC_008573.1 78585 79010 D hypothetical protein 78585..79010 Shewanella sp. ANA-3 4475881 YP_863727.1 CDS Shewana3_4211 NC_008573.1 79152 79604 R KEGG: ypn:YPN_1806 hypothetical protein; hypothetical protein complement(79152..79604) Shewanella sp. ANA-3 4475970 YP_863728.1 CDS Shewana3_4212 NC_008573.1 79601 80062 R TIGRFAM: conserved hypothetical protein; KEGG: ypa:YPA_1694 hypothetical protein; hypothetical protein complement(79601..80062) Shewanella sp. ANA-3 4475971 YP_863729.1 CDS Shewana3_4213 NC_008573.1 80198 84442 R KEGG: sty:HCM1.97 putative periplasmic protein; hypothetical protein complement(80198..84442) Shewanella sp. ANA-3 4475972 YP_863730.1 CDS Shewana3_4214 NC_008573.1 84628 85533 R KEGG: pha:PSHAb0164 putative disulfide isomerase, thiol-disulfide oxidase, periplasmic; hypothetical protein complement(84628..85533) Shewanella sp. ANA-3 4475973 YP_863731.1 CDS Shewana3_4215 NC_008573.1 85589 87583 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: eba:p1B53 ATP-dependent DNA helicase; helicase domain-containing protein complement(85589..87583) Shewanella sp. ANA-3 4475974 YP_863732.1 CDS Shewana3_4216 NC_008573.1 87652 88143 R hypothetical protein complement(87652..88143) Shewanella sp. ANA-3 4475975 YP_863733.1 CDS Shewana3_4217 NC_008573.1 88272 88994 D KEGG: hch:HCH_01785 predicted signal transduction protein; putative signal transduction protein 88272..88994 Shewanella sp. ANA-3 4475976 YP_863734.1 CDS Shewana3_4218 NC_008573.1 89025 91709 R KEGG: sty:HCM1.77 plasmid transfer protein; Type IV secretory pathway VirB4 components-like protein complement(89025..91709) Shewanella sp. ANA-3 4475977 YP_863735.1 CDS Shewana3_4219 NC_008573.1 91722 92450 R KEGG: sty:HCM1.76 putative plasmid transfer protein; hypothetical protein complement(91722..92450) Shewanella sp. ANA-3 4475978 YP_863736.1 CDS Shewana3_4220 NC_008573.1 92450 93277 R hypothetical protein complement(92450..93277) Shewanella sp. ANA-3 4475979 YP_863737.1 CDS Shewana3_4221 NC_008573.1 93556 94818 D KEGG: ppr:PBPRB1440 hypothetical protein; hypothetical protein 93556..94818 Shewanella sp. ANA-3 4475980 YP_863738.1 CDS Shewana3_4222 NC_008573.1 94833 95180 D hypothetical protein 94833..95180 Shewanella sp. ANA-3 4475981 YP_863739.1 CDS Shewana3_4223 NC_008573.1 95440 96366 D PFAM: protein of unknown function DUF1526; KEGG: nmu:NmulC_2780 protein of unknown function DUF1526; hypothetical protein 95440..96366 Shewanella sp. ANA-3 4475982 YP_863740.1 CDS Shewana3_4224 NC_008573.1 96487 96696 D KEGG: noc:Noc_1587 transposase; hypothetical protein 96487..96696 Shewanella sp. ANA-3 4475983 YP_863741.1 CDS Shewana3_4225 NC_008573.1 97320 98393 R KEGG: stm:PSLT053 plasmid partition protein B; hypothetical protein complement(97320..98393) Shewanella sp. ANA-3 4475984 YP_863742.1 CDS Shewana3_4226 NC_008573.1 98383 99600 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: ypm:pMT113 putative partitioning protein A; cobyrinic acid a,c-diamide synthase complement(98383..99600) Shewanella sp. ANA-3 4475985 YP_863743.1 CDS Shewana3_4227 NC_008573.1 100875 102038 R PFAM: initiator RepB protein; initiator RepB protein complement(100875..102038) Shewanella sp. ANA-3 4475986 YP_863744.1 CDS Shewana3_4228 NC_008573.1 102690 103265 D hypothetical protein 102690..103265 Shewanella sp. ANA-3 4475952 YP_863745.1 CDS Shewana3_4229 NC_008573.1 103338 103865 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: son:SO4028 single-strand binding protein; single-strand binding protein 103338..103865 Shewanella sp. ANA-3 4475953 YP_863746.1 CDS Shewana3_4230 NC_008573.1 103994 105601 D KEGG: sde:Sde_1588 HAD-superfamily hydrolase, subfamily IA, variant 1; hypothetical protein 103994..105601 Shewanella sp. ANA-3 4475954 YP_863747.1 CDS Shewana3_4231 NC_008573.1 105805 106092 D hypothetical protein 105805..106092 Shewanella sp. ANA-3 4475955 YP_863748.1 CDS Shewana3_4232 NC_008573.1 106224 106649 D hypothetical protein 106224..106649 Shewanella sp. ANA-3 4475956 YP_863749.1 CDS Shewana3_4233 NC_008573.1 106728 106979 D hypothetical protein 106728..106979 Shewanella sp. ANA-3 4475957 YP_863750.1 CDS Shewana3_4234 NC_008573.1 107846 108745 R TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: noc:Noc_1501 transposase; IS605 family transposase OrfB complement(107846..108745) Shewanella sp. ANA-3 4475958 YP_863751.1 CDS Shewana3_4235 NC_008573.1 108768 109001 R KEGG: sec:SCV08 virulence protein VsdF; virulence protein VsdF complement(108768..109001) Shewanella sp. ANA-3 4475959 YP_863752.1 CDS Shewana3_4236 NC_008573.1 109046 109474 D PFAM: transposase IS200-family protein; KEGG: sec:SCV07 transposase; transposase IS200-family protein 109046..109474 Shewanella sp. ANA-3 4475960 YP_863753.1 CDS Shewana3_4237 NC_008573.1 109580 109891 R SMART: helix-turn-helix domain protein; KEGG: ilo:IL0302 transcriptional regulator, Cro/CI/xre family; XRE family transcriptional regulator complement(109580..109891) Shewanella sp. ANA-3 4475961 YP_863754.1 CDS Shewana3_4238 NC_008573.1 110255 112495 R KEGG: hpj:jhp1070 hypothetical protein; hypothetical protein complement(110255..112495) Shewanella sp. ANA-3 4475962 YP_863755.1 CDS Shewana3_4240 NC_008573.1 113252 114955 D PFAM: N-6 DNA methylase; KEGG: neu:NE0385 site-specific DNA-methyltransferase, type I modification; N-6 DNA methylase 113252..114955 Shewanella sp. ANA-3 4475964 YP_863756.1 CDS Shewana3_4241 NC_008573.1 114945 116180 D PFAM: restriction modification system DNA specificity domain; KEGG: mma:MM2739 type I restriction-modification system specificity subunit; restriction modification system DNA specificity subunit 114945..116180 Shewanella sp. ANA-3 4475965 YP_863757.1 CDS Shewana3_4242 NC_008573.1 116180 116785 D KEGG: xft:PD2085 hypothetical protein; hypothetical protein 116180..116785 Shewanella sp. ANA-3 4475966 YP_863758.1 CDS Shewana3_4243 NC_008573.1 116797 117114 D KEGG: rso:RSc0886 hypothetical protein; hypothetical protein 116797..117114 Shewanella sp. ANA-3 4475967 YP_863759.1 CDS Shewana3_4244 NC_008573.1 117132 120386 D KEGG: mma:MM0431 type I restriction-modification system restriction subnit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD/DEAH box helicase domain protein; HsdR family type I site-specific deoxyribonuclease 117132..120386 Shewanella sp. ANA-3 4475968 YP_863760.1 CDS Shewana3_4245 NC_008573.1 120669 121280 R TIGRFAM: mobile mystery protein B; PFAM: filamentation induced by cAMP protein Fic; KEGG: mlo:mll2066 hypothetical protein; mobile mystery protein B complement(120669..121280) Shewanella sp. ANA-3 4475969 YP_863761.1 CDS Shewana3_4246 NC_008573.1 121277 121765 R TIGRFAM: mobile mystery protein A; SMART: helix-turn-helix domain protein; KEGG: gsu:GSU1390 DNA-binding protein; XRE family transcriptional regulator complement(121277..121765) Shewanella sp. ANA-3 4475839 YP_863762.1 CDS Shewana3_4247 NC_008573.1 122362 123075 R PFAM: TatD-related deoxyribonuclease; KEGG: ecc:c4511 Mg-dependent DNase; TatD-related deoxyribonuclease complement(122362..123075) Shewanella sp. ANA-3 4475840 YP_863763.1 CDS Shewana3_4248 NC_008573.1 123084 124388 R KEGG: ecc:c4512 hypothetical protein; hypothetical protein complement(123084..124388) Shewanella sp. ANA-3 4475841 YP_863764.1 CDS Shewana3_4249 NC_008573.1 124385 125137 R KEGG: ecc:c4513 hypothetical protein; hypothetical protein complement(124385..125137) Shewanella sp. ANA-3 4475842 YP_863765.1 CDS Shewana3_4250 NC_008573.1 125137 126921 R PFAM: KAP P-loop domain protein; KEGG: ecc:c4514 hypothetical protein; KAP P-loop domain-containing protein complement(125137..126921) Shewanella sp. ANA-3 4475843 YP_863766.1 CDS Shewana3_4251 NC_008573.1 127066 127518 R KEGG: vch:VC0182 hypothetical protein; hypothetical protein complement(127066..127518) Shewanella sp. ANA-3 4475844 YP_863767.1 CDS Shewana3_4252 NC_008573.1 127520 129604 R PFAM: phage integrase family protein; KEGG: vvy:VV0132 hypothetical protein; phage integrase family protein complement(127520..129604) Shewanella sp. ANA-3 4475845 YP_863768.1 CDS Shewana3_4253 NC_008573.1 129607 131877 R KEGG: vvy:VV0131 hypothetical protein; hypothetical protein complement(129607..131877) Shewanella sp. ANA-3 4475846 YP_863769.1 CDS Shewana3_4254 NC_008573.1 131864 133129 R PFAM: phage integrase family protein; KEGG: vch:VC0185 transposase, putative; phage integrase family protein complement(131864..133129) Shewanella sp. ANA-3 4475847 YP_863770.1 CDS Shewana3_4255 NC_008573.1 133553 133855 R hypothetical protein complement(133553..133855) Shewanella sp. ANA-3 4475848 YP_863771.1 CDS Shewana3_4256 NC_008573.1 133865 134134 R hypothetical protein complement(133865..134134) Shewanella sp. ANA-3 4475849 YP_863772.1 CDS Shewana3_4257 NC_008573.1 134135 134677 R hypothetical protein complement(134135..134677) Shewanella sp. ANA-3 4475850 YP_863773.1 CDS Shewana3_4258 NC_008573.1 134681 136039 R PFAM: TraB pilus assembly family protein; KEGG: sty:HCM1.73 putative plasmid transfer protein; TraB pilus assembly family protein complement(134681..136039) Shewanella sp. ANA-3 4475851 YP_863774.1 CDS Shewana3_4259 NC_008573.1 136041 137258 R KEGG: sty:HCM1.71 putative periplasmic protein; putative periplasmic protein complement(136041..137258) Shewanella sp. ANA-3 4475852 YP_863775.1 CDS Shewana3_4260 NC_008573.1 137306 137962 R KEGG: sty:HCM1.70 putative pilus assembly protein; hypothetical protein complement(137306..137962) Shewanella sp. ANA-3 4475853 YP_863776.1 CDS Shewana3_4261 NC_008573.1 137972 138256 R hypothetical protein complement(137972..138256) Shewanella sp. ANA-3 4475854 YP_863777.1 CDS Shewana3_4262 NC_008573.1 138328 138615 R hypothetical protein complement(138328..138615) Shewanella sp. ANA-3 4475855 YP_863778.1 CDS Shewana3_4263 NC_008573.1 138841 139476 R KEGG: sty:HCM1.275 hypothetical protein; hypothetical protein complement(138841..139476) Shewanella sp. ANA-3 4475987 YP_863779.1 CDS Shewana3_4264 NC_008573.1 139489 141363 R KEGG: rfr:Rfer_4266 hypothetical protein; hypothetical protein complement(139489..141363) Shewanella sp. ANA-3 4475988 YP_863780.1 CDS Shewana3_4265 NC_008573.1 141356 144181 R PFAM: Relaxase; KEGG: sty:HCM1.271 hypothetical protein; relaxase complement(141356..144181) Shewanella sp. ANA-3 4475989 YP_863781.1 CDS Shewana3_4266 NC_008573.1 144181 144900 R hypothetical protein complement(144181..144900) Shewanella sp. ANA-3 4475990 YP_863782.1 CDS Shewana3_4267 NC_008573.1 144910 145329 R KEGG: sty:HCM1.269 hypothetical protein; hypothetical protein complement(144910..145329) Shewanella sp. ANA-3 4475991 YP_863783.1 CDS Shewana3_4268 NC_008573.1 146057 147124 D KEGG: dar:Daro_2530 hypothetical protein; hypothetical protein 146057..147124 Shewanella sp. ANA-3 4475992 YP_863784.1 CDS Shewana3_4269 NC_008573.1 147133 147420 D hypothetical protein 147133..147420 Shewanella sp. ANA-3 4475993 YP_863785.1 CDS Shewana3_4270 NC_008573.1 147519 148514 D KEGG: eba:p1B150 sex pilus assembly protein; hypothetical protein 147519..148514 Shewanella sp. ANA-3 4475994 YP_863786.1 CDS Shewana3_4271 NC_008573.1 148511 149905 D KEGG: sty:HCM1.263c putative pilus assembly protein; hypothetical protein 148511..149905 Shewanella sp. ANA-3 4475995 YP_863787.1 CDS Shewana3_4272 NC_008573.1 149909 155239 D KEGG: lma:LmjF35.0540 proteophosphoglycan 5; hypothetical protein 149909..155239 Shewanella sp. ANA-3 4475996 YP_863788.1 CDS Shewana3_4273 NC_008573.1 155350 156240 D hypothetical protein 155350..156240 Shewanella sp. ANA-3 4475997 YP_863789.1 CDS Shewana3_4274 NC_008573.1 156254 156799 D hypothetical protein 156254..156799 Shewanella sp. ANA-3 4475998 YP_863790.1 CDS Shewana3_4275 NC_008573.1 156887 157792 R hypothetical protein complement(156887..157792) Shewanella sp. ANA-3 4475999 YP_863791.1 CDS Shewana3_4276 NC_008573.1 157936 158808 R PFAM: site-binding protein, DNA replication region; site-binding protein, DNA replication region complement(157936..158808) Shewanella sp. ANA-3 4476000 YP_863792.1 CDS Shewana3_4277 NC_008573.1 158929 159672 D PFAM: OmpA/MotB domain protein; KEGG: gme:Gmet_3541 OmpA/MotB; OmpA/MotB domain-containing protein 158929..159672 Shewanella sp. ANA-3 4476001 YP_863793.1 CDS Shewana3_4278 NC_008573.1 159748 160467 D KEGG: rfr:Rfer_4282 hypothetical protein; hypothetical protein 159748..160467 Shewanella sp. ANA-3 4476002 YP_863794.1 CDS Shewana3_4279 NC_008573.1 160852 161304 D hypothetical protein 160852..161304 Shewanella sp. ANA-3 4476003 YP_863795.1 CDS Shewana3_4280 NC_008573.1 161679 164060 D KEGG: sty:HCM1.49c putative periplasmic protein; putative periplasmic protein 161679..164060 Shewanella sp. ANA-3 4476004 YP_863796.1 CDS Shewana3_4281 NC_008573.1 164071 166488 D KEGG: sty:HCM1.56c putative periplasmic protein; hypothetical protein 164071..166488 Shewanella sp. ANA-3 4475935 YP_863797.1 CDS Shewana3_4282 NC_008573.1 166549 167286 R PFAM: transposase, IS4 family protein; KEGG: vvy:VVA0176 transposase; IS4 family transposase complement(166549..167286) Shewanella sp. ANA-3 4475936 YP_863798.1 CDS Shewana3_4283 NC_008573.1 167296 167466 R KEGG: vpa:VPA1316 transposase; transposase complement(167296..167466) Shewanella sp. ANA-3 4475937 YP_863799.1 CDS Shewana3_4284 NC_008573.1 167962 168783 R PFAM: Integrase, catalytic region; KEGG: plu:plu3016 transposase, IS30 family; integrase catalytic subunit complement(167962..168783) Shewanella sp. ANA-3 4475938 YP_863800.1 CDS Shewana3_4285 NC_008573.1 169058 169498 D KEGG: pha:PSHAa0302 hypothetical protein; hypothetical protein 169058..169498 Shewanella sp. ANA-3 4475939 YP_863801.1 CDS Shewana3_4286 NC_008573.1 169635 170150 D PFAM: protein of unknown function DUF411; KEGG: par:Psyc_1592 hypothetical protein; hypothetical protein 169635..170150 Shewanella sp. ANA-3 4475940 YP_863802.1 CDS Shewana3_4287 NC_008573.1 170147 172075 D TIGRFAM: Twin-arginine translocation pathway signal; copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: tcx:Tcr_1573 copper-resistance protein CopA; CopA family copper resistance protein 170147..172075 Shewanella sp. ANA-3 4475941 YP_863803.1 CDS Shewana3_4288 NC_008573.1 172099 172812 D PFAM: copper resistance B precursor; KEGG: tbd:Tbd_1325 probable copper resistance protein B; copper resistance B precursor 172099..172812 Shewanella sp. ANA-3 4475942 YP_863804.1 CDS Shewana3_4289 NC_008573.1 172928 173350 D PFAM: copper resistance protein CopC; KEGG: pha:PSHAb0009 putative copper resistance (CopC-like); copper resistance protein CopC 172928..173350 Shewanella sp. ANA-3 4475943 YP_863805.1 CDS Shewana3_4290 NC_008573.1 173365 174261 D PFAM: copper resistance D domain protein; KEGG: pha:PSHAb0008 putative copper export protein; copper resistance D domain-containing protein 173365..174261 Shewanella sp. ANA-3 4475944 YP_863806.1 CDS Shewana3_4291 NC_008573.1 174337 174780 D KEGG: pha:PSHAb0007 putative orphan protein; putative orphan protein 174337..174780 Shewanella sp. ANA-3 4475945 YP_863807.1 CDS Shewana3_4292 NC_008573.1 174969 175514 R KEGG: oih:OB3301 hypothetical protein; hypothetical protein complement(174969..175514) Shewanella sp. ANA-3 4475946 YP_863808.1 CDS Shewana3_4293 NC_008573.1 175971 177167 D PFAM: outer membrane porin; KEGG: wsu:WS0983 hypothetical protein; outer membrane porin 175971..177167 Shewanella sp. ANA-3 4475947 YP_863809.1 CDS Shewana3_4294 NC_008573.1 177633 177914 D KEGG: son:SO2129 transposase, putative; hypothetical protein 177633..177914 Shewanella sp. ANA-3 4475948 YP_863810.1 CDS Shewana3_4295 NC_008573.1 178084 179559 R TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ecs:ECs0608 putative 2-component sensor protein; sensor kinase CusS complement(178084..179559) Shewanella sp. ANA-3 4475949 YP_863811.1 CDS Shewana3_4296 NC_008573.1 179552 180232 R response regulator in two-component regulatory system with CusS; regulates the copper efflux system; DNA-binding transcriptional activator CusR complement(179552..180232) Shewanella sp. ANA-3 4475950 YP_863812.1 CDS Shewana3_4297 NC_008573.1 180422 181807 D with CusA, CusB and CusF is part of a cation efflux system that mediates resistance to copper and silver; copper/silver efflux system outer membrane protein CusC 180422..181807 Shewanella sp. ANA-3 4475951 YP_863813.1 CDS Shewana3_4298 NC_008573.1 181836 182189 D KEGG: ecj:JW0562 periplasmic copper-binding protein; periplasmic copper-binding protein 181836..182189 Shewanella sp. ANA-3 4476072 YP_863814.1 CDS Shewana3_4299 NC_008573.1 182303 183595 D with CusA, CusC and CusF is part of a cation efflux system that mediates resistance to copper and silver; copper/silver efflux system membrane fusion protein CusB 182303..183595 Shewanella sp. ANA-3 4476073 YP_863815.1 CDS Shewana3_4300 NC_008573.1 183606 186752 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: ecc:c0661 putative cation efflux system protein CusA; CzcA family heavy metal efflux protein 183606..186752 Shewanella sp. ANA-3 4476074 YP_863816.1 CDS Shewana3_4301 NC_008573.1 186848 187279 D PFAM: protein of unknown function DUF411; KEGG: mca:MCA0560 hypothetical protein; hypothetical protein 186848..187279 Shewanella sp. ANA-3 4476075 YP_863817.1 CDS Shewana3_4302 NC_008573.1 187406 189853 D KEGG: bja:bll0700 heavy-metal transporting P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; heavy metal translocating P-type ATPase 187406..189853 Shewanella sp. ANA-3 4476076 YP_863818.1 CDS Shewana3_4303 NC_008573.1 190125 190862 R PFAM: peptidase M23B; KEGG: stm:STM1890 putative peptidase; peptidase M23B complement(190125..190862) Shewanella sp. ANA-3 4476077 YP_863819.1 CDS Shewana3_4304 NC_008573.1 191151 191600 R KEGG: spt:SPA2166 possible copper-binding protein; hypothetical protein complement(191151..191600) Shewanella sp. ANA-3 4476078 YP_863820.1 CDS Shewana3_4305 NC_008573.1 192443 193609 R PFAM: chemotaxis sensory transducer; KEGG: wsu:WS0929 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(192443..193609) Shewanella sp. ANA-3 4476079 YP_863821.1 CDS Shewana3_4306 NC_008573.1 194552 195232 R PFAM: transposase, IS4 family protein; KEGG: vvy:VVA0176 transposase; IS4 family transposase complement(194552..195232) Shewanella sp. ANA-3 4476080 YP_863822.1 CDS Shewana3_4307 NC_008573.1 195317 198304 R PFAM: transposase Tn3 family protein; KEGG: xcv:XCV2273 Tn5044 transposase; transposase Tn3 family protein complement(195317..198304) Shewanella sp. ANA-3 4476081 YP_863823.1 CDS Shewana3_4308 NC_008573.1 198421 199047 R hypothetical protein complement(198421..199047) Shewanella sp. ANA-3 4476082 YP_863824.1 CDS Shewana3_4309 NC_008573.1 199403 199837 R PFAM: regulatory protein, MerR; KEGG: sty:HCM1.159 putative mercuric resistance operon coregulator; MerR family transcriptional regulator complement(199403..199837) Shewanella sp. ANA-3 4476083 YP_863825.1 CDS Shewana3_4310 NC_008573.1 199857 200657 R PFAM: EAL domain protein; KEGG: xac:XAC1938 GGDEF family protein; diguanylate phosphodiesterase complement(199857..200657) Shewanella sp. ANA-3 4476084 YP_863826.1 CDS Shewana3_4311 NC_008573.1 200669 202324 R TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: tbd:Tbd_1341 mercuric reductase MerA; putative mercuric reductase complement(200669..202324) Shewanella sp. ANA-3 4476085 YP_863827.1 CDS Shewana3_4312 NC_008573.1 202362 202781 R PFAM: MerC mercury resistance protein; KEGG: neu:NE0840 putative mercury transport protein; putative mercury transport protein MerC complement(202362..202781) Shewanella sp. ANA-3 4476086 YP_863828.1 CDS Shewana3_4313 NC_008573.1 202785 203060 R TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: ilo:IL1645 periplasmic mercuric ion binding protein, MerP; mercuric transport protein periplasmic component complement(202785..203060) Shewanella sp. ANA-3 4476087 YP_863829.1 CDS Shewana3_4314 NC_008573.1 203116 203463 R PFAM: Mercuric transport protein MerT; KEGG: sty:HCM1.234c putative mercuric transport protein; mercuric transporter MerT complement(203116..203463) Shewanella sp. ANA-3 4476088 YP_863830.1 CDS Shewana3_4315 NC_008573.1 203557 203949 R TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: neu:NE0843 bacterial regulatory proteins, MerR family; MerR family transcriptional regulator complement(203557..203949) Shewanella sp. ANA-3 4476089 YP_863831.1 CDS Shewana3_4316 NC_008573.1 203946 204968 R PFAM: phage integrase family protein; KEGG: sde:Sde_1962 AP endonuclease, family 1; phage integrase family protein complement(203946..204968) Shewanella sp. ANA-3 4475856 YP_863832.1 CDS Shewana3_4317 NC_008573.1 205173 206222 D KEGG: sde:Sde_1963 chromosome segregation ATPases-like; chromosome segregation ATPases-like protein 205173..206222 Shewanella sp. ANA-3 4475857 YP_863833.1 CDS Shewana3_4318 NC_008573.1 206336 209230 R PFAM: transposase Tn3 family protein; KEGG: neu:NE0835 transposase Tn3 family; transposase Tn3 family protein complement(206336..209230) Shewanella sp. ANA-3 4475858 YP_863834.1 CDS Shewana3_4319 NC_008573.1 209233 209793 R PFAM: Resolvase, N-terminal domain protein; Resolvase helix-turn-helix domain protein; KEGG: neu:NE0836 site-specific recombinase; resolvase domain-containing protein complement(209233..209793) Shewanella sp. ANA-3 4475859 YP_863835.1 CDS Shewana3_4320 NC_008573.1 209919 210998 R TIGRFAM: lipoprotein signal peptidase; PFAM: phosphoesterase, PA-phosphatase related; peptidase A8, signal peptidase II; KEGG: ilo:IL0633 lipoprotein signal peptidase; signal peptidase II complement(209919..210998) Shewanella sp. ANA-3 4475860 YP_863836.1 CDS Shewana3_4323 NC_008573.1 213486 213926 D TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: pfl:PFL_5893 Cd(II)/Pb(II)-responsive transcriptional regulator; MerR family transcriptional regulator 213486..213926 Shewanella sp. ANA-3 4475862 YP_863837.1 CDS Shewana3_4324 NC_008573.1 214517 215089 R PFAM: Methionine sulfoxide reductase A; KEGG: cps:CPS_3068 putative peptide methionine sulfoxide reductase MsrA; methionine sulfoxide reductase A complement(214517..215089) Shewanella sp. ANA-3 4475863 YP_863838.1 CDS Shewana3_4325 NC_008573.1 215086 215586 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(215086..215586) Shewanella sp. ANA-3 4476055 YP_863839.1 CDS Shewana3_4326 NC_008573.1 215589 216035 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(215589..216035) Shewanella sp. ANA-3 4476056 YP_863840.1 CDS Shewana3_4327 NC_008573.1 216272 216787 R PFAM: protein of unknown function DUF417; KEGG: pha:PSHAb0032 hypothetical protein; hypothetical protein complement(216272..216787) Shewanella sp. ANA-3 4476057 YP_863841.1 CDS Shewana3_4328 NC_008573.1 216925 217479 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: sde:Sde_3431 hypothetical protein; alkylhydroperoxidase complement(216925..217479) Shewanella sp. ANA-3 4476058 YP_863842.1 CDS Shewana3_4329 NC_008573.1 218568 219854 D KEGG: vpa:VPA0869 GGDEF family protein; hypothetical protein 218568..219854 Shewanella sp. ANA-3 4476059 YP_863843.1 CDS Shewana3_4330 NC_008573.1 220472 221449 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: xcv:XCV2971 putative sensor protein; diguanylate cyclase with GAF sensor 220472..221449 Shewanella sp. ANA-3 4476060 YP_863844.1 CDS Shewana3_4331 NC_008573.1 221669 222331 R PFAM: Methionine sulfoxide reductase A; KEGG: hma:rrnAC1491 peptide methionine sulfoxide reductase MsrA1; methionine sulfoxide reductase A complement(221669..222331) Shewanella sp. ANA-3 4476061 YP_863845.1 CDS Shewana3_4332 NC_008573.1 222537 222782 R hypothetical protein complement(222537..222782) Shewanella sp. ANA-3 4476062 YP_863846.1 CDS Shewana3_4333 NC_008573.1 222837 223277 R KEGG: vch:VC1236 PilB-related protein; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; methionine-R-sulfoxide reductase complement(222837..223277) Shewanella sp. ANA-3 4476063 YP_863847.1 CDS Shewana3_4334 NC_008573.1 223309 223545 R PFAM: glutaredoxin; KEGG: aph:APH_1162 glutaredoxin 3; glutaredoxin complement(223309..223545) Shewanella sp. ANA-3 4476064 YP_863848.1 CDS Shewana3_4335 NC_008573.1 223573 224061 R KEGG: bba:Bd1058 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase complement(223573..224061) Shewanella sp. ANA-3 4476065 YP_863849.1 CDS Shewana3_4336 NC_008573.1 224184 225119 D PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: sde:Sde_2769 phosphoribosylaminoimidazole carboxylase, ATPase subunit; AraC family transcriptional regulator 224184..225119 Shewanella sp. ANA-3 4476066 YP_863850.1 CDS Shewana3_4337 NC_008573.1 225122 225862 D hypothetical protein 225122..225862 Shewanella sp. ANA-3 4476067 YP_863851.1 CDS Shewana3_4338 NC_008573.1 226049 226336 R hypothetical protein complement(226049..226336) Shewanella sp. ANA-3 4476068 YP_863852.1 CDS Shewana3_4339 NC_008573.1 226703 227731 D PFAM: Integrase, catalytic region; KEGG: rfr:Rfer_3640 integrase; integrase catalytic subunit 226703..227731 Shewanella sp. ANA-3 4476069 YP_863853.1 CDS Shewana3_4340 NC_008573.1 227805 228281 D KEGG: yps:YPTB3922 hypothetical protein; hypothetical protein 227805..228281 Shewanella sp. ANA-3 4476070 YP_863854.1 CDS Shewana3_4341 NC_008573.1 228689 229144 R TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: sty:HCM1.151c putative mercuric resistance operon regulatory protein; putative transcriptional regulator MerR complement(228689..229144) Shewanella sp. ANA-3 4476071 YP_863855.1 CDS Shewana3_4342 NC_008573.1 229216 229611 D PFAM: Mercuric transport protein MerT; KEGG: sty:HCM1.152 putative mercuric transport protein; putative mercuric transport protein 229216..229611 Shewanella sp. ANA-3 4476037 YP_863856.1 CDS Shewana3_4343 NC_008573.1 229627 229902 D TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: sty:HCM1.153 putative mercuric transport protein periplasmic binding protein; mercuric transport protein periplasmic component 229627..229902 Shewanella sp. ANA-3 4476038 YP_863857.1 CDS Shewana3_4344 NC_008573.1 229930 230355 D PFAM: MerC mercury resistance protein; KEGG: sty:HCM1.157 putative mercury transport protein; putative mercury transport protein MerC 229930..230355 Shewanella sp. ANA-3 4476039 YP_863858.1 CDS Shewana3_4345 NC_008573.1 230394 232079 D TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: sty:HCM1.158 putative mercuric reductase; putative mercuric reductase 230394..232079 Shewanella sp. ANA-3 4476040 YP_863859.1 CDS Shewana3_4346 NC_008573.1 232097 232462 D TIGRFAM: mercuric resistence transcriptional repressor protein MerD; PFAM: regulatory protein, MerR; KEGG: sty:HCM1.159 putative mercuric resistance operon coregulator; transcriptional regulator MerD 232097..232462 Shewanella sp. ANA-3 4476041 YP_863860.1 CDS Shewana3_4347 NC_008573.1 232459 232695 D PFAM: MerE family protein; KEGG: sty:HCM1.160 hypothetical protein; putative mercury resistance protein 232459..232695 Shewanella sp. ANA-3 4476042 YP_863861.1 CDS Shewana3_4348 NC_008573.1 232761 232973 D KEGG: sty:HCM1.161 hypothetical protein; hypothetical protein 232761..232973 Shewanella sp. ANA-3 4476043 YP_863862.1 CDS Shewana3_4349 NC_008573.1 233152 233817 D KEGG: son:SOA0012 umuC protein; umuC protein 233152..233817 Shewanella sp. ANA-3 4476044 YP_863863.1 CDS Shewana3_4350 NC_008573.1 234373 235905 R KEGG: hch:HCH_06278 hypothetical protein; hypothetical protein complement(234373..235905) Shewanella sp. ANA-3 4476045 YP_863864.1 CDS Shewana3_4351 NC_008573.1 235902 236840 R PFAM: Patatin; KEGG: reu:Reut_C6025 patatin; patatin complement(235902..236840) Shewanella sp. ANA-3 4476046 YP_863865.1 CDS Shewana3_4352 NC_008573.1 236921 238486 R KEGG: eba:ebA2450 hypothetical protein; hypothetical protein complement(236921..238486) Shewanella sp. ANA-3 4476047 YP_863866.1 CDS Shewana3_4353 NC_008573.1 238479 238871 R KEGG: vch:VC0181 hypothetical protein; hypothetical protein complement(238479..238871) Shewanella sp. ANA-3 4476048 YP_863867.1 CDS Shewana3_4354 NC_008573.1 238948 240675 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: eli:ELI_04040 hypothetical protein; UBA/THIF-type NAD/FAD binding protein complement(238948..240675) Shewanella sp. ANA-3 4476049 YP_863868.1 CDS Shewana3_4355 NC_008573.1 240677 241708 R hypothetical protein complement(240677..241708) Shewanella sp. ANA-3 4476050 YP_863869.1 CDS Shewana3_4356 NC_008573.1 241909 242253 D PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 241909..242253 Shewanella sp. ANA-3 4476051 YP_863870.1 CDS Shewana3_4357 NC_008573.1 242263 243072 D PFAM: protein of unknown function DUF955; KEGG: xac:XAC1494 hypothetical protein; hypothetical protein 242263..243072 Shewanella sp. ANA-3 4476052 YP_863871.1 CDS Shewana3_4358 NC_008573.1 243930 244595 R PFAM: phage integrase family protein; KEGG: vvy:VVP57 putative site-specific recombinase; phage integrase family protein complement(243930..244595) Shewanella sp. ANA-3 4476053 YP_863872.1 CDS Shewana3_4359 NC_008573.1 244733 245080 R hypothetical protein complement(244733..245080) Shewanella sp. ANA-3 4476054 YP_863873.1 CDS Shewana3_4360 NC_008573.1 245592 245894 R hypothetical protein complement(245592..245894) Shewanella sp. ANA-3 4476020 YP_863874.1 CDS Shewana3_4361 NC_008573.1 246302 247450 R hypothetical protein complement(246302..247450) Shewanella sp. ANA-3 4476021 YP_863875.1 CDS Shewana3_4362 NC_008573.1 247614 249209 D PFAM: phosphoadenosine phosphosulfate reductase; KEGG: eba:p1B69 hypothetical protein; phosphoadenosine phosphosulfate reductase 247614..249209 Shewanella sp. ANA-3 4476022 YP_863876.1 CDS Shewana3_4363 NC_008573.1 249259 252246 R PFAM: transposase Tn3 family protein; KEGG: xcv:XCV2273 Tn5044 transposase; transposase Tn3 family protein complement(249259..252246) Shewanella sp. ANA-3 4476023 YP_863877.1 CDS Shewana3_4364 NC_008573.1 252447 253058 R PFAM: manganese and iron superoxide dismutase; KEGG: bja:bll7559 probable Fe/Mn superoxide dismutase; manganese and iron superoxide dismutase complement(252447..253058) Shewanella sp. ANA-3 4476024 YP_863878.1 CDS Shewana3_4365 NC_008573.1 253250 254617 R TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: dar:Daro_3555 chromate transporter; chromate transporter complement(253250..254617) Shewanella sp. ANA-3 4476025 YP_863879.1 CDS Shewana3_4366 NC_008573.1 254610 255548 R KEGG: rfr:Rfer_2446 chromate resistance exported protein; chromate resistance exported protein complement(254610..255548) Shewanella sp. ANA-3 4476026 YP_863880.1 CDS Shewana3_4367 NC_008573.1 255706 256713 R PFAM: phage integrase family protein; KEGG: sde:Sde_1962 AP endonuclease, family 1; phage integrase family protein complement(255706..256713) Shewanella sp. ANA-3 4476027 YP_863881.1 CDS Shewana3_4368 NC_008573.1 256919 257974 D KEGG: sde:Sde_1963 chromosome segregation ATPases-like; chromosome segregation ATPases-like protein 256919..257974 Shewanella sp. ANA-3 4476028 YP_863882.1 CDS Shewana3_4369 NC_008573.1 258087 258452 D hypothetical protein 258087..258452 Shewanella sp. ANA-3 4476029 YP_863883.1 CDS Shewana3_4370 NC_008573.1 258642 259220 R hypothetical protein complement(258642..259220) Shewanella sp. ANA-3 4476030 YP_863884.1 CDS Shewana3_4371 NC_008573.1 259417 259845 R hypothetical protein complement(259417..259845) Shewanella sp. ANA-3 4476031 YP_863885.1 CDS Shewana3_4372 NC_008573.1 260617 262353 D hypothetical protein 260617..262353 Shewanella sp. ANA-3 4476032 YP_863886.1 CDS Shewana3_4373 NC_008573.1 262445 262816 D hypothetical protein 262445..262816 Shewanella sp. ANA-3 4476033 YP_863887.1 CDS Shewana3_4374 NC_008573.1 262816 263064 D hypothetical protein 262816..263064 Shewanella sp. ANA-3 4476034 YP_863888.1 CDS Shewana3_4375 NC_008573.1 263170 263847 D hypothetical protein 263170..263847 Shewanella sp. ANA-3 4476035 YP_863889.1 CDS Shewana3_4376 NC_008573.1 263924 264508 D KEGG: son:SO2383 hypothetical protein; hypothetical protein 263924..264508 Shewanella sp. ANA-3 4476036 YP_863890.1 CDS Shewana3_4377 NC_008573.1 264486 265601 D PFAM: phage integrase family protein; KEGG: ppr:PBPRB0929 hypothetical protein; phage integrase family protein 264486..265601 Shewanella sp. ANA-3 4476005 YP_863891.1 CDS Shewana3_4378 NC_008573.1 265680 266051 D hypothetical protein 265680..266051 Shewanella sp. ANA-3 4476006 YP_863892.1 CDS Shewana3_4379 NC_008573.1 266060 266965 D KEGG: ppr:PBPRA1708 hypothetical protein; hypothetical protein 266060..266965 Shewanella sp. ANA-3 4476007 YP_863893.1 CDS Shewana3_4380 NC_008573.1 266975 267244 R hypothetical protein complement(266975..267244) Shewanella sp. ANA-3 4476008 YP_863894.1 CDS Shewana3_4381 NC_008573.1 267647 267979 R hypothetical protein complement(267647..267979) Shewanella sp. ANA-3 4476009 YP_863895.1 CDS Shewana3_4382 NC_008573.1 268001 268531 R KEGG: cps:CPS_4861 hypothetical protein; hypothetical protein complement(268001..268531) Shewanella sp. ANA-3 4476010 YP_863896.1 CDS Shewana3_4383 NC_008573.1 268551 269246 R KEGG: cps:CPS_4862 hypothetical protein; hypothetical protein complement(268551..269246) Shewanella sp. ANA-3 4476011 YP_863897.1 CDS Shewana3_4384 NC_008573.1 269236 272379 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: tcx:Tcr_2095 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein complement(269236..272379) Shewanella sp. ANA-3 4476012 YP_863898.1 CDS Shewana3_4385 NC_008573.1 272391 273635 R KEGG: tcx:Tcr_2096 secretion protein HlyD; secretion protein HlyD complement(272391..273635) Shewanella sp. ANA-3 4476013 YP_863899.1 CDS Shewana3_4386 NC_008573.1 273644 274927 R KEGG: tcx:Tcr_2097 outer membrane efflux protein; outer membrane efflux protein complement(273644..274927) Shewanella sp. ANA-3 4476014 YP_863900.1 CDS Shewana3_4387 NC_008573.1 274941 275921 R PFAM: peptidase M56, BlaR1; KEGG: noc:Noc_0291 hypothetical protein; peptidase M56, BlaR1 complement(274941..275921) Shewanella sp. ANA-3 4476015 YP_863901.1 CDS Shewana3_4388 NC_008573.1 275930 276307 R PFAM: transcriptional regulator TrmB; Penicillinase repressor; KEGG: noc:Noc_0290 penicillinase repressor; transcriptional regulator, TrmB complement(275930..276307) Shewanella sp. ANA-3 4476016 YP_863902.1 CDS Shewana3_4389 NC_008573.1 276395 276745 D KEGG: neu:NE1200 hypothetical protein; hypothetical protein 276395..276745 Shewanella sp. ANA-3 4476017 YP_863903.1 CDS Shewana3_4390 NC_008573.1 276877 277758 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_A0567 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator complement(276877..277758) Shewanella sp. ANA-3 4476018 YP_863904.1 CDS Shewana3_4391 NC_008573.1 277887 278324 D PFAM: transmembrane pair domain protein; KEGG: par:Psyc_0621 hypothetical protein; transmembrane pair domain-containing protein 277887..278324 Shewanella sp. ANA-3 4476019 YP_867652.1 CDS gidB NC_008577.1 39 659 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(39..659) Shewanella sp. ANA-3 4477440 YP_867653.1 CDS Shewana3_0002 NC_008577.1 777 2666 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(777..2666) Shewanella sp. ANA-3 4477441 YP_867654.1 CDS Shewana3_0003 NC_008577.1 3107 3547 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(3107..3547) Shewanella sp. ANA-3 4477442 YP_867655.1 CDS Shewana3_0004 NC_008577.1 3725 5272 D PFAM: TGF-beta receptor, type I/II extracellular region; KEGG: son:SO0002 proton/peptide symporter family protein; TGF-beta receptor, type I/II extracellular region 3725..5272 Shewanella sp. ANA-3 4477443 YP_867656.1 CDS trmE NC_008577.1 5376 6737 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(5376..6737) Shewanella sp. ANA-3 4477444 YP_867657.1 CDS Shewana3_0006 NC_008577.1 6841 8466 R PFAM: 60 kDa inner membrane insertion protein; KEGG: son:SO0004 inner membrane protein, 60 kDa; protein translocase subunit yidC complement(6841..8466) Shewanella sp. ANA-3 4477445 YP_867658.1 CDS Shewana3_0007 NC_008577.1 8470 8724 R PFAM: protein of unknown function DUF37; KEGG: son:SO0005 conserved hypothetical protein TIGR00278; hypothetical protein complement(8470..8724) Shewanella sp. ANA-3 4477446 YP_867659.1 CDS rnpA NC_008577.1 8691 9047 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(8691..9047) Shewanella sp. ANA-3 4477447 YP_867660.1 CDS dnaA NC_008577.1 9651 11033 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 9651..11033 Shewanella sp. ANA-3 4477448 YP_867661.1 CDS Shewana3_0010 NC_008577.1 11054 12154 D TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; KEGG: son:SO0009 DNA polymerase III, beta subunit; DNA polymerase III subunit beta 11054..12154 Shewanella sp. ANA-3 4477449 YP_867662.1 CDS recF NC_008577.1 12317 13399 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 12317..13399 Shewanella sp. ANA-3 4477450 YP_867663.1 CDS Shewana3_0012 NC_008577.1 13416 15833 D KEGG: son:SO0011 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 13416..15833 Shewanella sp. ANA-3 4477451 YP_867664.1 CDS Shewana3_0013 NC_008577.1 15916 16572 R PFAM: Glutathione S-transferase, N-terminal domain protein; KEGG: son:SO0012 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein complement(15916..16572) Shewanella sp. ANA-3 4477452 YP_867665.1 CDS Shewana3_0014 NC_008577.1 16699 17547 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vvy:VVA1346 transcriptional regulator; transcriptional regulator 16699..17547 Shewanella sp. ANA-3 4477453 YP_867666.1 CDS Shewana3_0015 NC_008577.1 17706 18749 D KEGG: son:SO0013 hypothetical protein; putative signal transduction protein 17706..18749 Shewanella sp. ANA-3 4477454 YP_867667.1 CDS glyS NC_008577.1 18813 20879 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(18813..20879) Shewanella sp. ANA-3 4477455 YP_867668.1 CDS glyQ NC_008577.1 20889 21794 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(20889..21794) Shewanella sp. ANA-3 4477456 YP_867669.1 CDS Shewana3_0018 NC_008577.1 21913 22488 D TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; KEGG: son:SO0016 DNA-3-methyladenine glycosidase I; DNA-3-methyladenine glycosylase I 21913..22488 Shewanella sp. ANA-3 4479436 YP_867670.1 CDS Shewana3_0019 NC_008577.1 22574 25762 R PFAM: amidohydrolase; WD40 domain protein beta Propeller; KEGG: son:SO0017 hypothetical amidohydrolase; amidohydrolase complement(22574..25762) Shewanella sp. ANA-3 4479437 YP_867671.1 CDS Shewana3_0020 NC_008577.1 25944 26381 R PFAM: MOSC domain containing protein; KEGG: son:SO0018 hypothetical protein; MOSC domain-containing protein complement(25944..26381) Shewanella sp. ANA-3 4479438 YP_867672.1 CDS Shewana3_0021 NC_008577.1 26417 26662 R TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA complement(26417..26662) Shewanella sp. ANA-3 4479439 YP_867673.1 CDS Shewana3_0022 NC_008577.1 26815 28026 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cvi:CV0239 hypothetical protein; diguanylate cyclase complement(26815..28026) Shewanella sp. ANA-3 4479440 YP_867674.1 CDS fadA NC_008577.1 28251 29414 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(28251..29414) Shewanella sp. ANA-3 4479441 YP_867675.1 CDS fadB NC_008577.1 29437 31587 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha complement(29437..31587) Shewanella sp. ANA-3 4479442 YP_867676.1 CDS Shewana3_0025 NC_008577.1 32031 33350 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 32031..33350 Shewanella sp. ANA-3 4479443 YP_867677.1 CDS Shewana3_0026 NC_008577.1 33366 33980 D PFAM: protein of unknown function UPF0029; KEGG: son:SO0023 conserved hypothetical protein TIGR00257; hypothetical protein 33366..33980 Shewanella sp. ANA-3 4479444 YP_867678.1 CDS Shewana3_0027 NC_008577.1 34058 35515 D TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: son:SO0024 potassium uptake protein TrkH; TrkH family potassium uptake protein 34058..35515 Shewanella sp. ANA-3 4479445 YP_867679.1 CDS Shewana3_0028 NC_008577.1 35517 36041 D KEGG: son:SO0025 protoporphyrinogen oxidase; protoporphyrinogen oxidase 35517..36041 Shewanella sp. ANA-3 4479446 YP_867680.1 CDS Shewana3_0029 NC_008577.1 36096 36404 R PFAM: regulatory protein, ArsR; KEGG: son:SO0026 transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(36096..36404) Shewanella sp. ANA-3 4479447 YP_867681.1 CDS Shewana3_0030 NC_008577.1 36603 37157 D KEGG: son:SO0027 protoporphyrinogen oxidase; protoporphyrinogen oxidase 36603..37157 Shewanella sp. ANA-3 4479448 YP_867682.1 CDS Shewana3_0031 NC_008577.1 37204 38646 R KEGG: son:SO0028 potassium uptake protein TrkH; TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; TrkH family potassium uptake protein complement(37204..38646) Shewanella sp. ANA-3 4479449 YP_867683.1 CDS trkA NC_008577.1 38658 40067 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(38658..40067) Shewanella sp. ANA-3 4479450 YP_867684.1 CDS Shewana3_0033 NC_008577.1 40083 41372 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; Methyltransferase type 11; KEGG: son:SO0030 Sun protein; sun protein complement(40083..41372) Shewanella sp. ANA-3 4479451 YP_867685.1 CDS Shewana3_0034 NC_008577.1 41372 42328 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: son:SO0031 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(41372..42328) Shewanella sp. ANA-3 4479452 YP_867686.1 CDS def NC_008577.1 42344 42850 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(42344..42850) Shewanella sp. ANA-3 4479453 YP_867687.1 CDS Shewana3_0036 NC_008577.1 42976 44100 D PFAM: Peptidoglycan-binding LysM; KEGG: son:SO0033 LysM domain protein; peptidoglycan-binding LysM 42976..44100 Shewanella sp. ANA-3 4478908 YP_867688.1 CDS Shewana3_0037 NC_008577.1 44184 45200 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: son:SO0034 DNA processing protein DprA, putative; DNA protecting protein DprA 44184..45200 Shewanella sp. ANA-3 4478909 YP_867689.1 CDS Shewana3_0038 NC_008577.1 45203 45679 D PFAM: protein of unknown function DUF494; KEGG: son:SO0035 Smg protein; hypothetical protein 45203..45679 Shewanella sp. ANA-3 4478910 YP_867690.1 CDS Shewana3_0039 NC_008577.1 45802 46365 D PFAM: DNA topoisomerase, type IA, zn finger domain protein; KEGG: son:SO0036 topoisomerase DNA-binding C4 zinc finger domain protein; DNA topoisomerase type IA Zn finger domain-containing protein 45802..46365 Shewanella sp. ANA-3 4478911 YP_867691.1 CDS Shewana3_0040 NC_008577.1 46495 47061 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain protein; KEGG: son:SO0037 Sua5/YciO/YrdC/YwlC family protein; translation factor SUA5 46495..47061 Shewanella sp. ANA-3 4478912 YP_867692.1 CDS Shewana3_0041 NC_008577.1 47091 47999 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 47091..47999 Shewanella sp. ANA-3 4478913 YP_867693.1 CDS Shewana3_0042 NC_008577.1 48030 48467 R PFAM: globin; KEGG: son:SO0039 hypothetical globin; globin complement(48030..48467) Shewanella sp. ANA-3 4478914 YP_867694.1 CDS aroE NC_008577.1 48638 49516 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 48638..49516 Shewanella sp. ANA-3 4478915 YP_867695.1 CDS Shewana3_0044 NC_008577.1 49537 49812 D PFAM: protein of unknown function DUF1488; KEGG: son:SO0041 hypothetical protein; hypothetical protein 49537..49812 Shewanella sp. ANA-3 4478916 YP_867696.1 CDS Shewana3_0045 NC_008577.1 49888 50436 R KEGG: son:SO0042 carbonic anhydrase, family 3; carbonic anhydrase complement(49888..50436) Shewanella sp. ANA-3 4478917 YP_867697.1 CDS Shewana3_0046 NC_008577.1 56354 56608 D PFAM: protein of unknown function UPF0153; KEGG: son:SO0044 hypothetical protein; hypothetical protein 56354..56608 Shewanella sp. ANA-3 4478922 YP_867698.1 CDS Shewana3_0047 NC_008577.1 56630 57085 D TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: son:SO0045 Rrf2 family protein; BadM/Rrf2 family transcriptional regulator 56630..57085 Shewanella sp. ANA-3 4478923 YP_867699.1 CDS Shewana3_0048 NC_008577.1 57060 57815 R PFAM: protein of unknown function DUF610, YibQ; KEGG: son:SO0046 hypothetical protein; hypothetical protein complement(57060..57815) Shewanella sp. ANA-3 4478924 YP_867700.1 CDS Shewana3_0049 NC_008577.1 57828 59033 R TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; KEGG: son:SO0047 carboxyl-terminal protease, putative; C-terminal processing peptidase-3 complement(57828..59033) Shewanella sp. ANA-3 4477985 YP_867701.1 CDS Shewana3_0050 NC_008577.1 59082 60215 R PFAM: peptidase M23B; KEGG: son:SO0048 peptidase, M23/M37 family; peptidase M23B complement(59082..60215) Shewanella sp. ANA-3 4477986 YP_867702.1 CDS Shewana3_0051 NC_008577.1 60226 61770 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(60226..61770) Shewanella sp. ANA-3 4477987 YP_867703.1 CDS Shewana3_0052 NC_008577.1 61994 62470 D PFAM: Rhodanese domain protein; KEGG: son:SO0050 rhodanese domain protein; rhodanese domain-containing protein 61994..62470 Shewanella sp. ANA-3 4477988 YP_867704.1 CDS Shewana3_0053 NC_008577.1 62731 63216 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 62731..63216 Shewanella sp. ANA-3 4477989 YP_867705.1 CDS gpsA NC_008577.1 63221 64237 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 63221..64237 Shewanella sp. ANA-3 4477990 YP_867706.1 CDS Shewana3_0055 NC_008577.1 64476 65660 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0054 conserved hypothetical protein TIGR00275; hypothetical protein 64476..65660 Shewanella sp. ANA-3 4477991 YP_867707.1 CDS Shewana3_0056 NC_008577.1 66383 67246 D KEGG: hch:HCH_04427 hypothetical protein; hypothetical protein 66383..67246 Shewanella sp. ANA-3 4477992 YP_867708.1 CDS Shewana3_0057 NC_008577.1 67824 69185 R TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: son:SO0057 potassium uptake protein, Trk family; TrkH family potassium uptake protein complement(67824..69185) Shewanella sp. ANA-3 4477993 YP_867709.1 CDS Shewana3_0058 NC_008577.1 69187 69885 R PFAM: TrkA-N domain protein; KEGG: son:SO0058 potassium uptake protein, putative; TrkA domain-containing protein complement(69187..69885) Shewanella sp. ANA-3 4477994 YP_867710.1 CDS Shewana3_0059 NC_008577.1 69930 70619 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO0059 transcriptional regulatory protein KdpE; two component transcriptional regulator complement(69930..70619) Shewanella sp. ANA-3 4477995 YP_867711.1 CDS Shewana3_0060 NC_008577.1 70620 71666 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO0060 sensor histidine kinase; ATPase domain-containing protein complement(70620..71666) Shewanella sp. ANA-3 4477996 YP_867712.1 CDS Shewana3_0061 NC_008577.1 71895 72821 R PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: pae:PA1205 conserved hypothetical protein; pirin domain-containing protein complement(71895..72821) Shewanella sp. ANA-3 4477997 YP_867713.1 CDS Shewana3_0062 NC_008577.1 72956 73693 D PFAM: protein of unknown function DUF81; KEGG: rfr:Rfer_1586 protein of unknown function DUF81; hypothetical protein 72956..73693 Shewanella sp. ANA-3 4477998 YP_867714.1 CDS Shewana3_0063 NC_008577.1 73793 74272 D PFAM: NLP/P60 protein; KEGG: son:SO0061 lipoprotein, NLP/P60 family; NLP/P60 protein 73793..74272 Shewanella sp. ANA-3 4477999 YP_867715.1 CDS Shewana3_0064 NC_008577.1 74297 75745 D PFAM: major facilitator superfamily MFS_1; KEGG: vch:VC1597 multidrug transporter, putative; major facilitator superfamily transporter 74297..75745 Shewanella sp. ANA-3 4478000 YP_867716.1 CDS Shewana3_0065 NC_008577.1 75834 76862 D PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein, LacI; KEGG: hch:HCH_04796 transcriptional regulator; LacI family transcriptional regulator 75834..76862 Shewanella sp. ANA-3 4478001 YP_867717.1 CDS Shewana3_0066 NC_008577.1 76921 78405 R PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: atc:AGR_pTi_251 sucrose phosphorylase SplA; sucrose phosphorylase complement(76921..78405) Shewanella sp. ANA-3 4478002 YP_867718.1 CDS Shewana3_0067 NC_008577.1 78662 79882 D PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC1133 transporter, putative; major facilitator superfamily transporter 78662..79882 Shewanella sp. ANA-3 4478003 YP_867719.1 CDS Shewana3_0068 NC_008577.1 80143 82539 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC1136 TonB-dependent receptor; TonB-dependent receptor 80143..82539 Shewanella sp. ANA-3 4478004 YP_867720.1 CDS Shewana3_0069 NC_008577.1 82632 83591 D PFAM: PfkB domain protein; KEGG: cps:CPS_2648 carbohydrate kinase, PfkB family; ribokinase-like domain-containing protein 82632..83591 Shewanella sp. ANA-3 4478005 YP_867721.1 CDS mogA NC_008577.1 83797 84330 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 83797..84330 Shewanella sp. ANA-3 4478006 YP_867722.1 CDS Shewana3_0071 NC_008577.1 84364 84582 R hypothetical protein complement(84364..84582) Shewanella sp. ANA-3 4478007 YP_867723.1 CDS Shewana3_0072 NC_008577.1 84734 85777 D PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: bur:Bcep18194_B1553 transcriptional regulator, AraC family; transcriptional regulator 84734..85777 Shewanella sp. ANA-3 4478008 YP_867724.1 CDS Shewana3_0073 NC_008577.1 85781 86041 R KEGG: son:SO0068 hypothetical protein; hypothetical protein complement(85781..86041) Shewanella sp. ANA-3 4478009 YP_867725.1 CDS Shewana3_0074 NC_008577.1 86091 87230 R KEGG: son:SO0069 transport protein, putative; transporter complement(86091..87230) Shewanella sp. ANA-3 4478010 YP_867726.1 CDS Shewana3_0075 NC_008577.1 87319 88053 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0070 ATP-binding transport protein NatA; ABC transporter-like protein complement(87319..88053) Shewanella sp. ANA-3 4478011 YP_867727.1 CDS Shewana3_0076 NC_008577.1 88057 89676 R PFAM: alpha/beta hydrolase fold; TAP domain protein; KEGG: son:SO0071 hydrolase, alpha/beta hydrolase fold family; TAP domain-containing protein complement(88057..89676) Shewanella sp. ANA-3 4478012 YP_867728.1 CDS Shewana3_0077 NC_008577.1 89769 90134 D PFAM: regulatory protein GntR, HTH; KEGG: son:SO0072 transcriptional regulator, GntR family; GntR family transcriptional regulator 89769..90134 Shewanella sp. ANA-3 4478013 YP_867729.1 CDS Shewana3_0078 NC_008577.1 90181 91044 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0073 ABC transporter, ATP-binding protein; ABC transporter-like protein 90181..91044 Shewanella sp. ANA-3 4478014 YP_867730.1 CDS Shewana3_0079 NC_008577.1 91041 92351 D KEGG: son:SO0074 hypothetical protein; hypothetical protein 91041..92351 Shewanella sp. ANA-3 4478015 YP_867731.1 CDS Shewana3_0080 NC_008577.1 92480 94273 D PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0075 AMP-binding family protein; AMP-dependent synthetase and ligase 92480..94273 Shewanella sp. ANA-3 4478016 YP_867732.1 CDS Shewana3_0081 NC_008577.1 94414 96903 D PFAM: MORN variant repeat protein; KEGG: son:SO0076 hypothetical protein; MORN repeat-containing protein 94414..96903 Shewanella sp. ANA-3 4478017 YP_867733.1 CDS Shewana3_0082 NC_008577.1 97011 97421 D PFAM: thioesterase superfamily protein; KEGG: son:SO0077 hypothetical 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 97011..97421 Shewanella sp. ANA-3 4478018 YP_867734.1 CDS Shewana3_0083 NC_008577.1 97540 98088 D PFAM: HPP family protein; KEGG: tdn:Tmden_1127 HPP; HPP family protein 97540..98088 Shewanella sp. ANA-3 4478019 YP_867735.1 CDS Shewana3_0084 NC_008577.1 98109 98372 R KEGG: son:SO0079 hypothetical protein; hypothetical protein complement(98109..98372) Shewanella sp. ANA-3 4478020 YP_867736.1 CDS Shewana3_0085 NC_008577.1 98432 98896 R PFAM: thioesterase superfamily protein; KEGG: son:SO0080 hypothetical 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein complement(98432..98896) Shewanella sp. ANA-3 4478021 YP_867737.1 CDS Shewana3_0086 NC_008577.1 99057 99410 D PFAM: regulatory protein, MerR; KEGG: pfl:PFL_0764 transcriptional regulator, MerR family; MerR family transcriptional regulator 99057..99410 Shewanella sp. ANA-3 4478022 YP_867738.1 CDS Shewana3_0087 NC_008577.1 99482 100060 D PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: ppr:PBPRA1975 hypothetical oxidoreductase; NAD(P)H dehydrogenase (quinone) 99482..100060 Shewanella sp. ANA-3 4478023 YP_867739.1 CDS Shewana3_0088 NC_008577.1 100076 100471 D PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: vpa:VP1790 hypothetical protein; glutathione-dependent formaldehyde-activating protein 100076..100471 Shewanella sp. ANA-3 4478024 YP_867740.1 CDS Shewana3_0089 NC_008577.1 100534 101214 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0084 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase complement(100534..101214) Shewanella sp. ANA-3 4478025 YP_867741.1 CDS Shewana3_0090 NC_008577.1 101578 102012 D KEGG: son:SO0085 hypothetical protein; hypothetical protein 101578..102012 Shewanella sp. ANA-3 4478026 YP_867742.1 CDS Shewana3_0091 NC_008577.1 102105 103118 D KEGG: son:SO4661 hypothetical protein; hypothetical protein 102105..103118 Shewanella sp. ANA-3 4478027 YP_867743.1 CDS Shewana3_0092 NC_008577.1 103361 104164 R PFAM: Integrase, catalytic region; KEGG: par:Psyc_0937 putative transposase OrfB; integrase catalytic subunit complement(103361..104164) Shewanella sp. ANA-3 4478028 YP_867744.1 CDS Shewana3_0093 NC_008577.1 104194 104589 R KEGG: dde:Dde_2987 transposase; transposase complement(104194..104589) Shewanella sp. ANA-3 4478029 YP_867745.1 CDS Shewana3_0094 NC_008577.1 104633 105280 D KEGG: son:SO0087 hypothetical protein; hypothetical protein 104633..105280 Shewanella sp. ANA-3 4478030 YP_867746.1 CDS Shewana3_0095 NC_008577.1 105371 107278 R PFAM: protein of unknown function DUF885; KEGG: cps:CPS_3202 putative lipoprotein; hypothetical protein complement(105371..107278) Shewanella sp. ANA-3 4478031 YP_867747.1 CDS Shewana3_0096 NC_008577.1 107548 107976 D PFAM: regulatory protein, MarR; KEGG: hch:HCH_03311 transcriptional regulator; MarR family transcriptional regulator 107548..107976 Shewanella sp. ANA-3 4478032 YP_867748.1 CDS Shewana3_0097 NC_008577.1 108012 108758 D PFAM: Siderophore-interacting protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: rba:RB11489 vulnibactin utilization protein VIUB; FAD-binding 9, siderophore-interacting domain-containing protein 108012..108758 Shewanella sp. ANA-3 4478033 YP_867749.1 CDS Shewana3_0098 NC_008577.1 109462 110688 R catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase complement(109462..110688) Shewanella sp. ANA-3 4478034 YP_867750.1 CDS Shewana3_0099 NC_008577.1 110886 111593 D TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: son:SO0096 histidine utilization repressor; histidine utilization repressor 110886..111593 Shewanella sp. ANA-3 4478035 YP_867751.1 CDS Shewana3_0100 NC_008577.1 111717 113387 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 111717..113387 Shewanella sp. ANA-3 4478036 YP_867752.1 CDS Shewana3_0101 NC_008577.1 113437 114978 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 113437..114978 Shewanella sp. ANA-3 4478037 YP_867753.1 CDS Shewana3_0103 NC_008577.1 118604 119518 D TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO0102 formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase beta subunit); formate dehydrogenase subunit beta 118604..119518 Shewanella sp. ANA-3 4477251 YP_867754.1 CDS Shewana3_0104 NC_008577.1 119515 120156 D TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO0103 formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit); formate dehydrogenase subunit gamma 119515..120156 Shewanella sp. ANA-3 4477252 YP_867755.1 CDS Shewana3_0105 NC_008577.1 120156 121064 D TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: son:SO0104 fdhE protein; formate dehydrogenase accessory protein FdhE 120156..121064 Shewanella sp. ANA-3 4477253 YP_867756.1 CDS Shewana3_0106 NC_008577.1 121113 122543 D catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 121113..122543 Shewanella sp. ANA-3 4477254 YP_867757.1 CDS Shewana3_0107 NC_008577.1 122540 124561 D TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: son:SO0106 selenocysteine-specific translation elongation factor; selenocysteine-specific translation elongation factor SelB 122540..124561 Shewanella sp. ANA-3 4477255 YP_867758.1 CDS Shewana3_0108 NC_008577.1 124669 125505 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 124669..125505 Shewanella sp. ANA-3 4477257 YP_867759.1 CDS Shewana3_0109 NC_008577.1 125630 126844 D PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: son:SO0108 hypothetical transporter component; putative inner membrane protein 125630..126844 Shewanella sp. ANA-3 4477258 YP_867760.1 CDS Shewana3_0110 NC_008577.1 126844 127077 D PFAM: SirA family protein; KEGG: son:SO0109 hypothetical protein; hypothetical protein 126844..127077 Shewanella sp. ANA-3 4477259 YP_867761.1 CDS Shewana3_0111 NC_008577.1 127143 128486 R PFAM: peptidase M48, Ste24p; KEGG: son:SO0110 hypothetical protease; peptidase M48, Ste24p complement(127143..128486) Shewanella sp. ANA-3 4477260 YP_867762.1 CDS Shewana3_0112 NC_008577.1 128604 129218 R KEGG: son:SO0111 hypothetical protein; hypothetical protein complement(128604..129218) Shewanella sp. ANA-3 4477261 YP_867763.1 CDS Shewana3_0113 NC_008577.1 129604 130224 D KEGG: son:SO0112 hypothetical protein; hypothetical protein 129604..130224 Shewanella sp. ANA-3 4477262 YP_867764.1 CDS Shewana3_0114 NC_008577.1 130227 131216 R KEGG: son:SO0113 hypothetical protein; hypothetical protein complement(130227..131216) Shewanella sp. ANA-3 4477263 YP_867765.1 CDS Shewana3_0115 NC_008577.1 131341 131982 R KEGG: son:SO0114 hypothetical protein; hypothetical protein complement(131341..131982) Shewanella sp. ANA-3 4477264 YP_867766.1 CDS Shewana3_0116 NC_008577.1 132180 132563 D PFAM: protein of unknown function DUF1090; KEGG: son:SO0119 hypothetical protein; hypothetical protein 132180..132563 Shewanella sp. ANA-3 4477265 YP_867767.1 CDS Shewana3_0117 NC_008577.1 132797 134065 D PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO0121 hypothetical small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS 132797..134065 Shewanella sp. ANA-3 4477266 YP_867768.1 CDS Shewana3_0118 NC_008577.1 134067 134690 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO0122 transporter, LysE family; lysine exporter protein LysE/YggA complement(134067..134690) Shewanella sp. ANA-3 4477267 YP_867769.1 CDS Shewana3_0119 NC_008577.1 134716 135276 R PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0123 acyltransferase family protein; phospholipid/glycerol acyltransferase complement(134716..135276) Shewanella sp. ANA-3 4477268 YP_867770.1 CDS Shewana3_0120 NC_008577.1 135406 135855 D KEGG: son:SO0125 hypothetical protein; hypothetical protein 135406..135855 Shewanella sp. ANA-3 4477269 YP_867771.1 CDS Shewana3_0121 NC_008577.1 135860 136660 R PFAM: protein of unknown function DUF833; KEGG: son:SO0126 hypothetical protein; hypothetical protein complement(135860..136660) Shewanella sp. ANA-3 4477270 YP_867772.1 CDS Shewana3_0122 NC_008577.1 136724 138367 R KEGG: son:SO0127 hypothetical protein; hypothetical protein complement(136724..138367) Shewanella sp. ANA-3 4477271 YP_867773.1 CDS Shewana3_0123 NC_008577.1 138661 139254 D PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO0129 conserved hypothetical protein TIGR00427; multiple antibiotic resistance (MarC)-like protein 138661..139254 Shewanella sp. ANA-3 4477272 YP_867774.1 CDS Shewana3_0124 NC_008577.1 139551 142121 D PFAM: PKD domain containing protein; peptidase M6, immune inhibitor A; KEGG: son:SO0130 protease, putative; peptidase M6, immune inhibitor A 139551..142121 Shewanella sp. ANA-3 4477273 YP_867775.1 CDS Shewana3_0125 NC_008577.1 142187 142750 R PFAM: Chorismate lyase; KEGG: son:SO0131 putative chorismate--pyruvate lyase; chorismate lyase complement(142187..142750) Shewanella sp. ANA-3 4477274 YP_867776.1 CDS Shewana3_0126 NC_008577.1 142852 143262 D PFAM: flagellar basal body-associated protein FliL; KEGG: son:SO0132 flagellar protein FliL, putative; flagellar basal body-associated protein FliL-like protein 142852..143262 Shewanella sp. ANA-3 4477275 YP_867777.1 CDS Shewana3_0127 NC_008577.1 143323 144417 D PFAM: protein of unknown function DUF890; KEGG: son:SO0134 hypothetical protein; putative SAM-dependent methyltransferase 143323..144417 Shewanella sp. ANA-3 4477276 YP_867778.1 CDS Shewana3_0128 NC_008577.1 144459 144755 R PFAM: protein of unknown function DUF333; KEGG: son:SO0135 hemolysin protein, putative; hypothetical protein complement(144459..144755) Shewanella sp. ANA-3 4477277 YP_867779.1 CDS Shewana3_0129 NC_008577.1 144781 145443 R KEGG: son:SO0136 hypothetical protein; response regulator receiver protein complement(144781..145443) Shewanella sp. ANA-3 4477278 YP_867780.1 CDS Shewana3_0130 NC_008577.1 145498 146259 R ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB complement(145498..146259) Shewanella sp. ANA-3 4477279 YP_867781.1 CDS Shewana3_0131 NC_008577.1 146271 147605 R TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: son:SO0138 molybdopterin biosynthesis MoeA protein; molybdopterin molybdochelatase complement(146271..147605) Shewanella sp. ANA-3 4477280 YP_867782.1 CDS Shewana3_0132 NC_008577.1 147853 148389 D PFAM: Ferritin, Dps family protein; KEGG: son:SO0139 ferritin; Ferritin, Dps family protein 147853..148389 Shewanella sp. ANA-3 4477281 YP_867783.1 CDS Shewana3_0133 NC_008577.1 148465 151698 R KEGG: son:SO0141 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(148465..151698) Shewanella sp. ANA-3 4477282 YP_867784.1 CDS ribB NC_008577.1 152062 152715 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(152062..152715) Shewanella sp. ANA-3 4477283 YP_867785.1 CDS Shewana3_0135 NC_008577.1 153400 155535 D PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: son:SO0144 protease II; oligopeptidase B 153400..155535 Shewanella sp. ANA-3 4477284 YP_867786.1 CDS Shewana3_0136 NC_008577.1 155558 155980 D PFAM: Excinuclease ABC, C subunit domain protein; KEGG: son:SO0145 hypothetical URI domain endonuclease; excinuclease ABC subunit C 155558..155980 Shewanella sp. ANA-3 4477285 YP_867787.1 CDS Shewana3_0137 NC_008577.1 156299 157129 D hypothetical protein 156299..157129 Shewanella sp. ANA-3 4477286 YP_867788.1 CDS Shewana3_0138 NC_008577.1 157777 158553 R KEGG: son:SO0150 lipoprotein, putative; putative lipoprotein complement(157777..158553) Shewanella sp. ANA-3 4477287 YP_867789.1 CDS Shewana3_0139 NC_008577.1 158822 159589 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0151 hypothetical SAM-dependent methyltransferase; type 12 methyltransferase 158822..159589 Shewanella sp. ANA-3 4477288 YP_867790.1 CDS Shewana3_0140 NC_008577.1 159615 161594 R PFAM: peptidase M14, carboxypeptidase A; KEGG: son:SO0152 hypothetical carboxypeptidase; peptidase M14, carboxypeptidase A complement(159615..161594) Shewanella sp. ANA-3 4477289 YP_867791.1 CDS Shewana3_0141 NC_008577.1 161725 162843 R KEGG: son:SO0154 hypothetical protein; hypothetical protein complement(161725..162843) Shewanella sp. ANA-3 4477290 YP_867792.1 CDS Shewana3_0142 NC_008577.1 163107 164336 R PFAM: sodium:dicarboxylate symporter; KEGG: son:SO0157 proton/glutamate symporter; sodium:dicarboxylate symporter complement(163107..164336) Shewanella sp. ANA-3 4477291 YP_867793.1 CDS Shewana3_0143 NC_008577.1 164796 165149 D KEGG: son:SO0159 hypothetical protein; hypothetical protein 164796..165149 Shewanella sp. ANA-3 4477292 YP_867794.1 CDS Shewana3_0144 NC_008577.1 165232 166965 R KEGG: ilo:IL0291 hypothetical protein; hypothetical protein complement(165232..166965) Shewanella sp. ANA-3 4477293 YP_867795.1 CDS Shewana3_0145 NC_008577.1 167372 168835 D PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_01122 outer membrane protein and related peptidoglycan-associated (LipO)protein; OmpA/MotB domain-containing protein 167372..168835 Shewanella sp. ANA-3 4477294 YP_867796.1 CDS Shewana3_0146 NC_008577.1 168954 170513 R PFAM: AbgT putative transporter; short chain fatty acid transporter; KEGG: son:SO0160 transporter, putative; transporter AbgT complement(168954..170513) Shewanella sp. ANA-3 4477295 YP_867797.1 CDS Shewana3_0147 NC_008577.1 170761 172302 R PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase complement(170761..172302) Shewanella sp. ANA-3 4477296 YP_867798.1 CDS hslO NC_008577.1 172505 173365 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(172505..173365) Shewanella sp. ANA-3 4477297 YP_867799.1 CDS Shewana3_0149 NC_008577.1 173402 173800 R PFAM: RNA-binding S4 domain protein; KEGG: son:SO0164 heat shock protein 15; RNA-binding S4 domain-containing protein complement(173402..173800) Shewanella sp. ANA-3 4477298 YP_867800.1 CDS Shewana3_0150 NC_008577.1 174052 174978 D TIGRFAM: general secretion pathway protein C; KEGG: son:SO0165 general secretion pathway protein C; general secretion pathway protein C 174052..174978 Shewanella sp. ANA-3 4477299 YP_867801.1 CDS Shewana3_0151 NC_008577.1 175003 177111 D TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: son:SO0166 general secretion pathway protein D; general secretion pathway protein D 175003..177111 Shewanella sp. ANA-3 4477300 YP_867802.1 CDS Shewana3_0152 NC_008577.1 177108 178673 D KEGG: son:SO0167 general secretion pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; type II secretion system protein E (GspE) 177108..178673 Shewanella sp. ANA-3 4478289 YP_867803.1 CDS Shewana3_0153 NC_008577.1 178677 179900 D TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: son:SO0168 general secretion pathway protein F; general secretion pathway protein F 178677..179900 Shewanella sp. ANA-3 4478290 YP_867804.1 CDS Shewana3_0154 NC_008577.1 179970 180404 D general secretion pathway protein G 179970..180404 Shewanella sp. ANA-3 4478291 YP_867805.1 CDS Shewana3_0155 NC_008577.1 180406 180978 D TIGRFAM: general secretion pathway protein H; Prepilin-type cleavage/methylation-like; KEGG: son:SO0170 general secretion pathway protein H; general secretion pathway protein H 180406..180978 Shewanella sp. ANA-3 4478292 YP_867806.1 CDS Shewana3_0156 NC_008577.1 180965 181333 D TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; methylation site containing protein; KEGG: son:SO0171 general secretion pathway protein I; general secretion pathway protein I 180965..181333 Shewanella sp. ANA-3 4478293 YP_867807.1 CDS Shewana3_0157 NC_008577.1 181314 182081 D TIGRFAM: general secretion pathway protein J; PFAM: methylation site containing protein; KEGG: son:SO0172 general secretion pathway protein J; general secretion pathway protein J 181314..182081 Shewanella sp. ANA-3 4478294 YP_867808.1 CDS Shewana3_0158 NC_008577.1 182078 183076 D PFAM: General secretion pathway protein K; KEGG: son:SO0173 general secretion pathway protein K; general secretion pathway protein K 182078..183076 Shewanella sp. ANA-3 4478295 YP_867809.1 CDS Shewana3_0159 NC_008577.1 183125 184312 D TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: son:SO0174 general secretion pathway protein L; general secretion pathway protein L 183125..184312 Shewanella sp. ANA-3 4478296 YP_867810.1 CDS Shewana3_0160 NC_008577.1 184314 184790 D PFAM: General secretion pathway M protein; KEGG: son:SO0175 general secretion pathway protein M; general secretion pathway M protein 184314..184790 Shewanella sp. ANA-3 4478297 YP_867811.1 CDS Shewana3_0161 NC_008577.1 184805 185566 D PFAM: type II secretion system protein N; KEGG: son:SO0176 general secretion pathway protein N; type II secretion system protein N 184805..185566 Shewanella sp. ANA-3 4478298 YP_867812.1 CDS Shewana3_0162 NC_008577.1 185630 186292 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0177 HAD-superfamily hydrolase, subfamily IA, variant 3 protein family; methyl-accepting chemotaxis sensory transducer complement(185630..186292) Shewanella sp. ANA-3 4478299 YP_867813.1 CDS Shewana3_0163 NC_008577.1 186398 187012 D PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: son:SO0179 hypothetical protein; aspartyl/asparaginyl beta-hydroxylase 186398..187012 Shewanella sp. ANA-3 4478300 YP_867814.1 CDS Shewana3_0164 NC_008577.1 186990 189002 D PFAM: Phytanoyl-CoA dioxygenase; KEGG: son:SO0180 hypothetical protein; phytanoyl-CoA dioxygenase 186990..189002 Shewanella sp. ANA-3 4478301 YP_867815.1 CDS Shewana3_0165 NC_008577.1 188999 190165 D KEGG: son:SO0181 hypothetical protein; hypothetical protein 188999..190165 Shewanella sp. ANA-3 4478302 YP_867816.1 CDS Shewana3_0166 NC_008577.1 190152 190640 D PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_06057 acetyltransferase; N-acetyltransferase GCN5 190152..190640 Shewanella sp. ANA-3 4478303 YP_867817.1 CDS Shewana3_0167 NC_008577.1 190875 191510 D PFAM: phage Tail Collar domain protein; KEGG: pfo:Pfl_0155 phage tail collar; phage tail collar domain-containing protein 190875..191510 Shewanella sp. ANA-3 4478304 YP_867818.1 CDS Shewana3_0168 NC_008577.1 191630 202264 D PFAM: OmpA domain protein transmembrane region-containing protein; Fibronectin, type III domain protein; Ig family protein; SMART: Cadherin; Dystroglycan-type cadherin domain protein; KEGG: son:SO0189 fibronectin type III domain protein; Ig family protein 191630..202264 Shewanella sp. ANA-3 4478305 YP_867819.1 CDS nudE NC_008577.1 202502 203053 D ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 202502..203053 Shewanella sp. ANA-3 4477932 YP_867820.1 CDS Shewana3_0170 NC_008577.1 203124 203936 D TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: son:SO0191 cysQ protein; 3'(2'),5'-bisphosphate nucleotidase 203124..203936 Shewanella sp. ANA-3 4477933 YP_867821.1 CDS Shewana3_0171 NC_008577.1 203943 204386 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0192 acetyltransferase, GNAT family; N-acetyltransferase GCN5 203943..204386 Shewanella sp. ANA-3 4477934 YP_867822.1 CDS Shewana3_0172 NC_008577.1 204617 205228 D PFAM: regulatory protein, TetR; KEGG: son:SO0193 transcriptional regulator, TetR family; TetR family transcriptional regulator 204617..205228 Shewanella sp. ANA-3 4477935 YP_867823.1 CDS Shewana3_0173 NC_008577.1 205219 207084 D PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: son:SO0194 acyltransferase family protein; phospholipid/glycerol acyltransferase 205219..207084 Shewanella sp. ANA-3 4477936 YP_867824.1 CDS Shewana3_0174 NC_008577.1 207152 208465 D hypothetical protein 207152..208465 Shewanella sp. ANA-3 4477937 YP_867825.1 CDS Shewana3_0175 NC_008577.1 208523 209620 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(208523..209620) Shewanella sp. ANA-3 4477938 YP_867826.1 CDS Shewana3_0176 NC_008577.1 209620 210678 R catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase complement(209620..210678) Shewanella sp. ANA-3 4477939 YP_867827.1 CDS Shewana3_0177 NC_008577.1 210775 211902 R PFAM: fatty acid desaturase; KEGG: son:SO0197 fatty acid desaturase, family 1; Delta-9 acyl-phospholipid desaturase complement(210775..211902) Shewanella sp. ANA-3 4477940 YP_867828.1 CDS Shewana3_0178 NC_008577.1 212025 212639 D negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 212025..212639 Shewanella sp. ANA-3 4477941 YP_867829.1 CDS Shewana3_0179 NC_008577.1 212709 213806 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(212709..213806) Shewanella sp. ANA-3 4477942 YP_867830.1 CDS Shewana3_0180 NC_008577.1 213948 214769 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 213948..214769 Shewanella sp. ANA-3 4477943 YP_867831.1 CDS Shewana3_0181 NC_008577.1 214781 215245 R PFAM: RNP-1 like RNA-binding protein; KEGG: son:SO0208 RNA-binding protein; RNP-1-like RNA-binding protein complement(214781..215245) Shewanella sp. ANA-3 4477944 YP_867832.1 CDS murB NC_008577.1 221318 222373 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 221318..222373 Shewanella sp. ANA-3 4477950 YP_867833.1 CDS Shewana3_0183 NC_008577.1 222366 223325 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 222366..223325 Shewanella sp. ANA-3 4477951 YP_867834.1 CDS Shewana3_0184 NC_008577.1 223327 224277 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(223327..224277) Shewanella sp. ANA-3 4477952 YP_867835.1 CDS Shewana3_0185 NC_008577.1 224989 226173 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 224989..226173 Shewanella sp. ANA-3 4477957 YP_867836.1 CDS secE NC_008577.1 226453 226824 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 226453..226824 Shewanella sp. ANA-3 4477958 YP_867837.1 CDS Shewana3_0187 NC_008577.1 226834 227385 D KEGG: son:SO0219 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein; transcription antitermination protein nusG 226834..227385 Shewanella sp. ANA-3 4477959 YP_867838.1 CDS rplK NC_008577.1 227514 227942 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 227514..227942 Shewanella sp. ANA-3 4477960 YP_867839.1 CDS rplA NC_008577.1 227947 228648 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 227947..228648 Shewanella sp. ANA-3 4477961 YP_867840.1 CDS rplJ NC_008577.1 228916 229416 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 228916..229416 Shewanella sp. ANA-3 4477962 YP_867841.1 CDS rplL NC_008577.1 229471 229842 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 229471..229842 Shewanella sp. ANA-3 4477963 YP_867842.1 CDS rpoB NC_008577.1 230085 234122 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 230085..234122 Shewanella sp. ANA-3 4477964 YP_867843.1 CDS Shewana3_0193 NC_008577.1 234206 238423 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 234206..238423 Shewanella sp. ANA-3 4477965 YP_867844.1 CDS rpsL NC_008577.1 238603 238977 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 238603..238977 Shewanella sp. ANA-3 4477966 YP_867845.1 CDS Shewana3_0195 NC_008577.1 239060 239530 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 239060..239530 Shewanella sp. ANA-3 4477967 YP_867846.1 CDS Shewana3_0196 NC_008577.1 239609 241705 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 239609..241705 Shewanella sp. ANA-3 4477968 YP_867847.1 CDS Shewana3_0197 NC_008577.1 241777 242961 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 241777..242961 Shewanella sp. ANA-3 4477969 YP_867848.1 CDS rpsJ NC_008577.1 243299 243610 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 243299..243610 Shewanella sp. ANA-3 4477970 YP_867849.1 CDS rplC NC_008577.1 243638 244276 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 243638..244276 Shewanella sp. ANA-3 4477971 YP_867850.1 CDS rplD NC_008577.1 244294 244899 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 244294..244899 Shewanella sp. ANA-3 4477972 YP_867851.1 CDS rplW NC_008577.1 244896 245201 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 244896..245201 Shewanella sp. ANA-3 4477973 YP_867852.1 CDS rplB NC_008577.1 245218 246042 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 245218..246042 Shewanella sp. ANA-3 4477974 YP_867853.1 CDS rpsS NC_008577.1 246057 246335 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 246057..246335 Shewanella sp. ANA-3 4477975 YP_867854.1 CDS rplV NC_008577.1 246351 246683 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 246351..246683 Shewanella sp. ANA-3 4477976 YP_867855.1 CDS rpsC NC_008577.1 246693 247385 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 246693..247385 Shewanella sp. ANA-3 4477977 YP_867856.1 CDS rplP NC_008577.1 247397 247807 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 247397..247807 Shewanella sp. ANA-3 4477978 YP_867857.1 CDS Shewana3_0207 NC_008577.1 247807 247998 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 247807..247998 Shewanella sp. ANA-3 4477979 YP_867858.1 CDS rpsQ NC_008577.1 247998 248246 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 247998..248246 Shewanella sp. ANA-3 4477980 YP_867859.1 CDS rplN NC_008577.1 248425 248793 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 248425..248793 Shewanella sp. ANA-3 4477981 YP_867860.1 CDS rplX NC_008577.1 248805 249119 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 248805..249119 Shewanella sp. ANA-3 4477982 YP_867861.1 CDS rplE NC_008577.1 249132 249671 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 249132..249671 Shewanella sp. ANA-3 4477983 YP_867862.1 CDS rpsN NC_008577.1 249682 249987 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 249682..249987 Shewanella sp. ANA-3 4477984 YP_867863.1 CDS rpsH NC_008577.1 250012 250404 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 250012..250404 Shewanella sp. ANA-3 4476458 YP_867864.1 CDS rplF NC_008577.1 250415 250948 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 250415..250948 Shewanella sp. ANA-3 4476459 YP_867865.1 CDS rplR NC_008577.1 250959 251309 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 250959..251309 Shewanella sp. ANA-3 4476460 YP_867866.1 CDS rpsE NC_008577.1 251322 251825 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 251322..251825 Shewanella sp. ANA-3 4476461 YP_867867.1 CDS rpmD NC_008577.1 251832 252014 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 251832..252014 Shewanella sp. ANA-3 4476462 YP_867868.1 CDS rplO NC_008577.1 252018 252452 D late assembly protein; 50S ribosomal protein L15 252018..252452 Shewanella sp. ANA-3 4476463 YP_867869.1 CDS secY NC_008577.1 252460 253800 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 252460..253800 Shewanella sp. ANA-3 4476464 YP_867870.1 CDS rpmJ NC_008577.1 253822 253935 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 253822..253935 Shewanella sp. ANA-3 4476465 YP_867871.1 CDS rpsM NC_008577.1 254051 254407 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 254051..254407 Shewanella sp. ANA-3 4476466 YP_867872.1 CDS Shewana3_0222 NC_008577.1 254422 254814 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 254422..254814 Shewanella sp. ANA-3 4476467 YP_867873.1 CDS rpsD NC_008577.1 254846 255466 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 254846..255466 Shewanella sp. ANA-3 4476468 YP_867874.1 CDS Shewana3_0224 NC_008577.1 255491 256480 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 255491..256480 Shewanella sp. ANA-3 4476469 YP_867875.1 CDS rplQ NC_008577.1 256521 256916 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 256521..256916 Shewanella sp. ANA-3 4476470 YP_867876.1 CDS Shewana3_0226 NC_008577.1 256982 257986 R KEGG: vch:VCA0212 hypothetical protein; hypothetical protein complement(256982..257986) Shewanella sp. ANA-3 4476471 YP_867877.1 CDS Shewana3_0227 NC_008577.1 258101 258586 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(258101..258586) Shewanella sp. ANA-3 4476472 YP_867878.1 CDS Shewana3_0228 NC_008577.1 258583 258783 R PFAM: Heme exporter protein D (CcmD); KEGG: son:SO0260 heme exporter protein CcmD; Heme exporter protein CcmD complement(258583..258783) Shewanella sp. ANA-3 4476473 YP_867879.1 CDS Shewana3_0229 NC_008577.1 258783 259529 R TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: son:SO0261 heme exporter protein CcmC; heme exporter protein CcmC complement(258783..259529) Shewanella sp. ANA-3 4476474 YP_867880.1 CDS Shewana3_0230 NC_008577.1 259531 260217 R TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: son:SO0262 heme exporter protein CcmB; heme exporter protein CcmB complement(259531..260217) Shewanella sp. ANA-3 4476475 YP_867881.1 CDS Shewana3_0231 NC_008577.1 260229 260879 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(260229..260879) Shewanella sp. ANA-3 4476476 YP_867882.1 CDS Shewana3_0232 NC_008577.1 261205 261504 D PFAM: cytochrome c, class I; KEGG: son:SO0264 cytochrome c; cytochrome c, class I 261205..261504 Shewanella sp. ANA-3 4476477 YP_867883.1 CDS Shewana3_0233 NC_008577.1 261588 262835 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0265 cytochrome c-type biogenesis protein CcmH; hypothetical protein complement(261588..262835) Shewanella sp. ANA-3 4476478 YP_867884.1 CDS Shewana3_0234 NC_008577.1 263235 265214 D TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: son:SO0266 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF 263235..265214 Shewanella sp. ANA-3 4476479 YP_867885.1 CDS Shewana3_0235 NC_008577.1 265226 265780 D TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: son:SO0267 thiol:disulfide interchange protein DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE 265226..265780 Shewanella sp. ANA-3 4476480 YP_867886.1 CDS Shewana3_0236 NC_008577.1 265777 266256 D PFAM: cytochrome C biogenesis protein; KEGG: son:SO0268 cytochrome c-type biogenesis protein CcmH; cytochrome C biogenesis protein 265777..266256 Shewanella sp. ANA-3 4476481 YP_867887.1 CDS Shewana3_0237 NC_008577.1 266253 266834 D PFAM: Redoxin domain protein; KEGG: son:SO0269 thioredoxin, putative; redoxin domain-containing protein 266253..266834 Shewanella sp. ANA-3 4476482 YP_867888.1 CDS Shewana3_0239 NC_008577.1 272673 273185 D KEGG: son:SO4492 hypothetical protein; hypothetical protein 272673..273185 Shewanella sp. ANA-3 4476487 YP_867889.1 CDS Shewana3_0240 NC_008577.1 273224 274540 R PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: son:SO4488 sensor histidine kinase; ATPase domain-containing protein complement(273224..274540) Shewanella sp. ANA-3 4476488 YP_867890.1 CDS Shewana3_0241 NC_008577.1 274543 275205 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4487 DNA-binding response regulator; two component transcriptional regulator complement(274543..275205) Shewanella sp. ANA-3 4476489 YP_867891.1 CDS Shewana3_0242 NC_008577.1 275205 275471 R PFAM: Propeptide, PepSY amd peptidase M4; KEGG: son:SO4486 hypothetical protein; peptidase complement(275205..275471) Shewanella sp. ANA-3 4476490 YP_867892.1 CDS Shewana3_0243 NC_008577.1 275464 276027 R KEGG: son:SO4485 diheme cytochrome c; diheme cytochrome c complement(275464..276027) Shewanella sp. ANA-3 4476491 YP_867893.1 CDS Shewana3_0244 NC_008577.1 276075 276509 R KEGG: son:SO4484 cytochrome c-type protein Shp; cytochrome c-type protein Shp complement(276075..276509) Shewanella sp. ANA-3 4476492 YP_867894.1 CDS Shewana3_0245 NC_008577.1 276543 277139 R PFAM: cytochrome B561; KEGG: son:SO4483 cytochrome b, putative; cytochrome B561 complement(276543..277139) Shewanella sp. ANA-3 4479153 YP_867895.1 CDS Shewana3_0246 NC_008577.1 277346 277768 D KEGG: son:SO4482 hypothetical protein; hypothetical protein 277346..277768 Shewanella sp. ANA-3 4479154 YP_867896.1 CDS Shewana3_0247 NC_008577.1 277797 278285 D KEGG: son:SO4481 hypothetical protein; hypothetical protein 277797..278285 Shewanella sp. ANA-3 4479155 YP_867897.1 CDS Shewana3_0248 NC_008577.1 278282 279199 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0910 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(278282..279199) Shewanella sp. ANA-3 4479156 YP_867898.1 CDS Shewana3_0249 NC_008577.1 279335 280096 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hch:HCH_02025 short-chain alcohol dehydrogenase-like protein; short-chain dehydrogenase/reductase SDR 279335..280096 Shewanella sp. ANA-3 4479157 YP_867899.1 CDS Shewana3_0250 NC_008577.1 280166 281686 R PFAM: aldehyde dehydrogenase; KEGG: son:SO4480 aldehyde dehydrogenase; aldehyde dehydrogenase complement(280166..281686) Shewanella sp. ANA-3 4479158 YP_867900.1 CDS Shewana3_0251 NC_008577.1 282029 283915 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: son:SO4479 sigma-54 dependent transcriptional regulator; Fis family GAF modulated sigma54 specific transcriptional regulator 282029..283915 Shewanella sp. ANA-3 4479159 YP_867901.1 CDS Shewana3_0252 NC_008577.1 283974 285323 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4478 sensor protein CpxA; ATPase domain-containing protein complement(283974..285323) Shewanella sp. ANA-3 4479160 YP_867902.1 CDS Shewana3_0253 NC_008577.1 285338 286024 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4477 transcriptional regulatory protein CpxR; two component transcriptional regulator complement(285338..286024) Shewanella sp. ANA-3 4479161 YP_867903.1 CDS Shewana3_0254 NC_008577.1 286327 286818 D PFAM: protein of unknown function, Spy-related; KEGG: son:SO4476 spheroplast protein y precursor, putative; hypothetical protein 286327..286818 Shewanella sp. ANA-3 4479162 YP_867904.1 CDS Shewana3_0255 NC_008577.1 286869 287768 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: son:SO4475 cation efflux family protein; cation diffusion facilitator family transporter 286869..287768 Shewanella sp. ANA-3 4479163 YP_867905.1 CDS Shewana3_0256 NC_008577.1 287807 288217 D KEGG: son:SO4474 hypothetical protein; hypothetical protein 287807..288217 Shewanella sp. ANA-3 4479164 YP_867906.1 CDS Shewana3_0257 NC_008577.1 288404 288817 D KEGG: son:SO4473 outer membrane protein, putative; outer membrane protein 288404..288817 Shewanella sp. ANA-3 4479165 YP_867907.1 CDS Shewana3_0258 NC_008577.1 289031 290440 R KEGG: son:SO4472 nitrogen regulation protein NR(I); TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator, NtrC, Fis family complement(289031..290440) Shewanella sp. ANA-3 4479166 YP_867908.1 CDS Shewana3_0259 NC_008577.1 290484 291530 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: son:SO4471 nitrogen regulation protein; signal transduction histidine kinase, nitrogen specific, NtrB complement(290484..291530) Shewanella sp. ANA-3 4479167 YP_867909.1 CDS Shewana3_0260 NC_008577.1 291652 292185 R KEGG: son:SO4470 hypothetical protein; hypothetical protein complement(291652..292185) Shewanella sp. ANA-3 4479168 YP_867910.1 CDS Shewana3_0261 NC_008577.1 292460 293617 R PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO4469 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase complement(292460..293617) Shewanella sp. ANA-3 4479169 YP_867911.1 CDS Shewana3_0262 NC_008577.1 293767 294363 R PFAM: regulatory protein, TetR; KEGG: son:SO4468 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(293767..294363) Shewanella sp. ANA-3 4479170 YP_867912.1 CDS Shewana3_0263 NC_008577.1 294480 294791 R PFAM: protein of unknown function DUF1255; KEGG: son:SO4467 hypothetical protein; hypothetical protein complement(294480..294791) Shewanella sp. ANA-3 4479171 YP_867913.1 CDS Shewana3_0264 NC_008577.1 295103 297058 D PFAM: chemotaxis sensory transducer; KEGG: son:SO4466 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 295103..297058 Shewanella sp. ANA-3 4479172 YP_867914.1 CDS Shewana3_0265 NC_008577.1 297172 299271 R PFAM: protein of unknown function DUF323; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4465 hypothetical protein; hypothetical protein complement(297172..299271) Shewanella sp. ANA-3 4479173 YP_867915.1 CDS Shewana3_0266 NC_008577.1 299571 300554 D PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO4463 prolyl 4-hydroxylase, alpha subunit domain protein; 2OG-Fe(II) oxygenase 299571..300554 Shewanella sp. ANA-3 4479174 YP_867916.1 CDS Shewana3_0267 NC_008577.1 300704 301093 D KEGG: son:SO4462 hypothetical protein; hypothetical protein 300704..301093 Shewanella sp. ANA-3 4479175 YP_867917.1 CDS Shewana3_0268 NC_008577.1 301666 302505 D PFAM: PfkB domain protein; KEGG: son:SO4458 carbohydrate kinase, PfkB family; site-specific DNA-methyltransferase (adenine-specific) 301666..302505 Shewanella sp. ANA-3 4479176 YP_867918.1 CDS Shewana3_0269 NC_008577.1 302810 304267 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO4457 GGDEF domain protein; diguanylate cyclase 302810..304267 Shewanella sp. ANA-3 4479177 YP_867919.1 CDS Shewana3_0270 NC_008577.1 304385 305080 D PFAM: 3-alpha; MOSC domain containing protein; KEGG: son:SO4456 hypothetical protein; MOSC domain-containing protein 304385..305080 Shewanella sp. ANA-3 4479178 YP_867920.1 CDS Shewana3_0271 NC_008577.1 305117 305473 D KEGG: son:SO4455 hypothetical protein; hypothetical protein 305117..305473 Shewanella sp. ANA-3 4479179 YP_867921.1 CDS Shewana3_0272 NC_008577.1 305555 307471 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4454 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(305555..307471) Shewanella sp. ANA-3 4479180 YP_867922.1 CDS Shewana3_0273 NC_008577.1 307775 309424 R PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: son:SO4453 electron transfer flavoprotein-ubiquinone oxidoreductase, putative; electron transfer flavoprotein-ubiquinone oxidoreductase complement(307775..309424) Shewanella sp. ANA-3 4479181 YP_867923.1 CDS moaA NC_008577.1 309765 310778 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 309765..310778 Shewanella sp. ANA-3 4479182 YP_867924.1 CDS moaC NC_008577.1 310891 311370 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 310891..311370 Shewanella sp. ANA-3 4479183 YP_867925.1 CDS Shewana3_0276 NC_008577.1 311390 311641 D TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: son:SO4450 molybdenum cofactor biosynthesis protein D; molybdopterin synthase subunit MoaD 311390..311641 Shewanella sp. ANA-3 4479184 YP_867926.1 CDS Shewana3_0277 NC_008577.1 311643 312110 D PFAM: molybdopterin biosynthesis MoaE; KEGG: son:SO4449 molybdenum cofactor biosynthesis protein E; molybdopterin synthase subunit MoaE 311643..312110 Shewanella sp. ANA-3 4479185 YP_867927.1 CDS Shewana3_0278 NC_008577.1 312150 312953 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: son:SO4448 molybdenum ABC transporter, periplasmic molybdenum-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 312150..312953 Shewanella sp. ANA-3 4479186 YP_867928.1 CDS Shewana3_0279 NC_008577.1 312962 313642 D TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4447 molybdenum ABC transporter, permease protein; molybdate ABC transporter inner membrane subunit 312962..313642 Shewanella sp. ANA-3 4479187 YP_867929.1 CDS Shewana3_0280 NC_008577.1 313623 314726 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO4446 molybdenum ABC transporter, ATP-binding protein; ABC transporter-like protein 313623..314726 Shewanella sp. ANA-3 4479188 YP_867930.1 CDS Shewana3_0281 NC_008577.1 315052 315573 D KEGG: son:SO4429 hypothetical protein; hypothetical protein 315052..315573 Shewanella sp. ANA-3 4479189 YP_867931.1 CDS Shewana3_0282 NC_008577.1 315620 316297 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4428 DNA-binding response regulator; two component transcriptional regulator 315620..316297 Shewanella sp. ANA-3 4479190 YP_867932.1 CDS Shewana3_0283 NC_008577.1 316368 317603 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4427 sensor histidine kinase; ATPase domain-containing protein 316368..317603 Shewanella sp. ANA-3 4479191 YP_867933.1 CDS Shewana3_0284 NC_008577.1 317636 318325 D TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: vfi:VF1020 tRNA pseudouridine synthase A; pseudouridine synthase Rlu family protein 317636..318325 Shewanella sp. ANA-3 4479192 YP_867934.1 CDS Shewana3_0285 NC_008577.1 318445 318612 D PFAM: protein of unknown function UPF0057; KEGG: son:SO4423 hypothetical protein; hypothetical protein 318445..318612 Shewanella sp. ANA-3 4479193 YP_867935.1 CDS Shewana3_0286 NC_008577.1 318683 320854 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4423.1 hypothetical ferric aerobactin receptor; TonB-dependent receptor complement(318683..320854) Shewanella sp. ANA-3 4479194 YP_867936.1 CDS Shewana3_0287 NC_008577.1 321158 321349 D KEGG: son:SO4421 hypothetical protein; hypothetical protein 321158..321349 Shewanella sp. ANA-3 4479195 YP_867937.1 CDS Shewana3_0288 NC_008577.1 321362 321874 R PFAM: peptidase M23B; KEGG: son:SO4420 peptidase, M23/M37 family; peptidase M23B complement(321362..321874) Shewanella sp. ANA-3 4479196 YP_867938.1 CDS Shewana3_0289 NC_008577.1 321896 322477 R KEGG: son:SO4419 hypothetical protein; hypothetical protein complement(321896..322477) Shewanella sp. ANA-3 4479197 YP_867939.1 CDS Shewana3_0290 NC_008577.1 322495 323184 R PFAM: CHAP domain containing protein; KEGG: son:SO4418 trypanothione synthetase domain protein; CHAP domain-containing protein complement(322495..323184) Shewanella sp. ANA-3 4479198 YP_867940.1 CDS Shewana3_0291 NC_008577.1 323374 324492 R KEGG: hch:HCH_03340 predicted Zn-dependent hydrolase of the beta-lactamase fold; beta-lactamase fold Zn-dependent hydrolase complement(323374..324492) Shewanella sp. ANA-3 4479199 YP_867941.1 CDS Shewana3_0292 NC_008577.1 324598 325209 D PFAM: regulatory protein, TetR; KEGG: cps:CPS_1358 transcriptional regulator, TetR family; TetR family transcriptional regulator 324598..325209 Shewanella sp. ANA-3 4479200 YP_867942.1 CDS Shewana3_0293 NC_008577.1 325290 326633 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter complement(325290..326633) Shewanella sp. ANA-3 4479201 YP_867943.1 CDS Shewana3_0294 NC_008577.1 326917 328095 D KEGG: son:SO4414 hypothetical protein; hypothetical protein 326917..328095 Shewanella sp. ANA-3 4479202 YP_867944.1 CDS Shewana3_0295 NC_008577.1 328100 329221 D PFAM: aminotransferase, class V; KEGG: son:SO4413 hypothetical kynureninase; class V aminotransferase 328100..329221 Shewanella sp. ANA-3 4479454 YP_867945.1 CDS Shewana3_0296 NC_008577.1 329357 329680 R KEGG: son:SO4412 hypothetical protein; hypothetical protein complement(329357..329680) Shewanella sp. ANA-3 4479455 YP_867946.1 CDS Shewana3_0297 NC_008577.1 329865 331109 R PFAM: sodium:dicarboxylate symporter; KEGG: oih:OB1282 H(+):sodium-glutamate symporter; sodium:dicarboxylate symporter complement(329865..331109) Shewanella sp. ANA-3 4479456 YP_867947.1 CDS Shewana3_0298 NC_008577.1 331499 331765 R hypothetical protein complement(331499..331765) Shewanella sp. ANA-3 4479457 YP_867948.1 CDS Shewana3_0299 NC_008577.1 331825 334062 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eca:ECA0876 TonB-dependent ferric aerobactin receptor; TonB-dependent siderophore receptor complement(331825..334062) Shewanella sp. ANA-3 4479458 YP_867949.1 CDS glnA NC_008577.1 334470 335879 R forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase complement(334470..335879) Shewanella sp. ANA-3 4479459 YP_867950.1 CDS Shewana3_0301 NC_008577.1 336865 338676 D TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: son:SO4408 virulence regulator BipA; GTP-binding protein TypA 336865..338676 Shewanella sp. ANA-3 4479460 YP_867951.1 CDS Shewana3_0302 NC_008577.1 338762 339769 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: vpa:VPA0381 putative transcription regulator; AraC family transcriptional regulator complement(338762..339769) Shewanella sp. ANA-3 4479461 YP_867952.1 CDS Shewana3_0303 NC_008577.1 339908 340669 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vpa:VPA0382 putative sorbitol-6-phosphate 2-dehydrogenase; short-chain dehydrogenase/reductase SDR 339908..340669 Shewanella sp. ANA-3 4479462 YP_867953.1 CDS Shewana3_0304 NC_008577.1 340714 341220 D KEGG: vpa:VPA0383 hypothetical protein; hypothetical protein 340714..341220 Shewanella sp. ANA-3 4479463 YP_867954.1 CDS Shewana3_0305 NC_008577.1 341231 342307 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: vpa:VPA0384 hypothetical protein; alcohol dehydrogenase 341231..342307 Shewanella sp. ANA-3 4479464 YP_867955.1 CDS Shewana3_0306 NC_008577.1 342661 344847 D TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: son:SO4405 catalase/peroxidase HPI; catalase/peroxidase HPI 342661..344847 Shewanella sp. ANA-3 4479465 YP_867956.1 CDS Shewana3_0307 NC_008577.1 344934 346181 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4404 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin complement(344934..346181) Shewanella sp. ANA-3 4479466 YP_867957.1 CDS Shewana3_0308 NC_008577.1 346356 348101 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, transmembrane region; KEGG: tdn:Tmden_1328 diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(346356..348101) Shewanella sp. ANA-3 4479467 YP_867958.1 CDS Shewana3_0309 NC_008577.1 348288 348941 R KEGG: son:SO4403 hypothetical protein; hypothetical protein complement(348288..348941) Shewanella sp. ANA-3 4479468 YP_867959.1 CDS Shewana3_0310 NC_008577.1 348971 349192 R KEGG: son:SO4402 hypothetical protein; hypothetical protein complement(348971..349192) Shewanella sp. ANA-3 4479469 YP_867960.1 CDS rbn NC_008577.1 349274 350287 D RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 349274..350287 Shewanella sp. ANA-3 4479470 YP_867961.1 CDS Shewana3_0312 NC_008577.1 350384 351289 D PFAM: alpha/beta hydrolase fold; KEGG: son:SO4400 proline iminopeptidase, putative; prolyl aminopeptidase 350384..351289 Shewanella sp. ANA-3 4479048 YP_867962.1 CDS Shewana3_0313 NC_008577.1 351286 351888 D KEGG: son:SO4399 hypothetical protein; hypothetical protein 351286..351888 Shewanella sp. ANA-3 4479049 YP_867963.1 CDS Shewana3_0314 NC_008577.1 351904 352341 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 351904..352341 Shewanella sp. ANA-3 4479050 YP_867964.1 CDS Shewana3_0315 NC_008577.1 352381 352818 D TIGRFAM: thioesterase domain, putative; KEGG: son:SO4397 hypothetical acetyltransferase; thioesterase domain-containing protein 352381..352818 Shewanella sp. ANA-3 4479051 YP_867965.1 CDS Shewana3_0316 NC_008577.1 352952 353548 D FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 352952..353548 Shewanella sp. ANA-3 4479052 YP_867966.1 CDS Shewana3_0317 NC_008577.1 353610 353774 R KEGG: son:SO4395 hypothetical protein; hypothetical protein complement(353610..353774) Shewanella sp. ANA-3 4479053 YP_867967.1 CDS Shewana3_0318 NC_008577.1 353816 354139 R PFAM: Rhodanese domain protein; KEGG: son:SO4394 phage shock protein E; rhodanese domain-containing protein complement(353816..354139) Shewanella sp. ANA-3 4479054 YP_867968.1 CDS Shewana3_0319 NC_008577.1 354235 354810 R PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: lpp:plpp0134 hypothetical protein; XRE family transcriptional regulator complement(354235..354810) Shewanella sp. ANA-3 4479055 YP_867969.1 CDS Shewana3_0320 NC_008577.1 354937 356127 D TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: xcv:XCV4391 benzoate permease; benzoate transporter 354937..356127 Shewanella sp. ANA-3 4479056 YP_867970.1 CDS Shewana3_0321 NC_008577.1 356185 356640 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO4393 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(356185..356640) Shewanella sp. ANA-3 4479057 YP_867971.1 CDS Shewana3_0322 NC_008577.1 356990 357637 D KEGG: vch:VCA0253 antibiotic acetyltransferase; antibiotic acetyltransferase 356990..357637 Shewanella sp. ANA-3 4479058 YP_867972.1 CDS Shewana3_0323 NC_008577.1 357838 358269 R KEGG: plu:plu0332 hypothetical protein; hypothetical protein complement(357838..358269) Shewanella sp. ANA-3 4479059 YP_867973.1 CDS Shewana3_0324 NC_008577.1 358324 358800 R hypothetical protein complement(358324..358800) Shewanella sp. ANA-3 4479060 YP_867974.1 CDS Shewana3_0325 NC_008577.1 359707 360450 R KEGG: son:SO4384 hypothetical protein; hypothetical protein complement(359707..360450) Shewanella sp. ANA-3 4479061 YP_867975.1 CDS Shewana3_0326 NC_008577.1 360461 361714 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II complement(360461..361714) Shewanella sp. ANA-3 4479062 YP_867976.1 CDS fabG NC_008577.1 361715 362440 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(361715..362440) Shewanella sp. ANA-3 4479063 YP_867977.1 CDS Shewana3_0328 NC_008577.1 362566 363105 R KEGG: son:SO4381 thioester dehydrase family protein; thioester dehydrase family protein complement(362566..363105) Shewanella sp. ANA-3 4479064 YP_867978.1 CDS Shewana3_0329 NC_008577.1 363111 364328 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(363111..364328) Shewanella sp. ANA-3 4479065 YP_867979.1 CDS Shewana3_0330 NC_008577.1 364425 365159 R KEGG: son:SO4379 hypothetical protein; hypothetical protein complement(364425..365159) Shewanella sp. ANA-3 4479066 YP_867980.1 CDS Shewana3_0331 NC_008577.1 365164 366471 R PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: son:SO4378 FAD-binding protein; FAD-binding monooxygenase complement(365164..366471) Shewanella sp. ANA-3 4479067 YP_867981.1 CDS Shewana3_0332 NC_008577.1 366472 368991 R KEGG: son:SO4377 hypothetical protein; hypothetical protein complement(366472..368991) Shewanella sp. ANA-3 4479068 YP_867982.1 CDS Shewana3_0333 NC_008577.1 369001 369843 R KEGG: son:SO4376 hypothetical protein; hypothetical protein complement(369001..369843) Shewanella sp. ANA-3 4479069 YP_867983.1 CDS Shewana3_0334 NC_008577.1 369840 370274 R KEGG: son:SO4375 hypothetical 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase complement(369840..370274) Shewanella sp. ANA-3 4479070 YP_867984.1 CDS Shewana3_0335 NC_008577.1 370271 371836 R PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO4374 histidine ammonia-lyase, putative; histidine ammonia-lyase complement(370271..371836) Shewanella sp. ANA-3 4479071 YP_867985.1 CDS Shewana3_0336 NC_008577.1 371833 373653 R PFAM: glycosyl transferase, family 2; lipid A biosynthesis acyltransferase; KEGG: son:SO4373 glycosyl transferase, group 2 family protein; glycosyl transferase family protein complement(371833..373653) Shewanella sp. ANA-3 4479072 YP_867986.1 CDS Shewana3_0337 NC_008577.1 373662 374036 R KEGG: son:SO4372 thioester dehydrase family protein; thioester dehydrase family protein complement(373662..374036) Shewanella sp. ANA-3 4479073 YP_867987.1 CDS Shewana3_0338 NC_008577.1 374029 375393 R KEGG: son:SO4371 hypothetical protein; aconitate hydratase complement(374029..375393) Shewanella sp. ANA-3 4479074 YP_867988.1 CDS Shewana3_0339 NC_008577.1 375390 375524 R KEGG: son:SO4370 hypothetical protein; hypothetical protein complement(375390..375524) Shewanella sp. ANA-3 4479075 YP_867989.1 CDS Shewana3_0340 NC_008577.1 375622 376017 D KEGG: dde:Dde_2987 transposase; transposase 375622..376017 Shewanella sp. ANA-3 4479076 YP_867990.1 CDS Shewana3_0341 NC_008577.1 376047 376850 D PFAM: Integrase, catalytic region; KEGG: par:Psyc_0937 putative transposase OrfB; integrase catalytic subunit 376047..376850 Shewanella sp. ANA-3 4479077 YP_867991.1 CDS Shewana3_0342 NC_008577.1 376857 377240 R KEGG: son:SO4370 hypothetical protein; hypothetical protein complement(376857..377240) Shewanella sp. ANA-3 4479078 YP_867992.1 CDS Shewana3_0343 NC_008577.1 377240 377488 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(377240..377488) Shewanella sp. ANA-3 4479079 YP_867993.1 CDS Shewana3_0344 NC_008577.1 377498 377752 R KEGG: son:SO4368 acyl carrier protein, putative; acyl carrier protein complement(377498..377752) Shewanella sp. ANA-3 4479080 YP_867994.1 CDS Shewana3_0345 NC_008577.1 377739 378587 R PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO4367 acyltransferase family protein; phospholipid/glycerol acyltransferase complement(377739..378587) Shewanella sp. ANA-3 4479081 YP_867995.1 CDS Shewana3_0346 NC_008577.1 378580 379314 R KEGG: son:SO4366 hypothetical protein; hypothetical protein complement(378580..379314) Shewanella sp. ANA-3 4479082 YP_867996.1 CDS Shewana3_0347 NC_008577.1 379699 380595 R KEGG: son:SO4365 hypothetical protein; hypothetical protein complement(379699..380595) Shewanella sp. ANA-3 4479083 YP_867997.1 CDS Shewana3_0348 NC_008577.1 380774 382864 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(380774..382864) Shewanella sp. ANA-3 4479084 YP_867998.1 CDS Shewana3_0349 NC_008577.1 383252 384298 D KEGG: ppu:PP2372 periplasmic sugar-binding protein, putative; periplasmic sugar-binding protein 383252..384298 Shewanella sp. ANA-3 4479085 YP_867999.1 CDS Shewana3_0350 NC_008577.1 384315 386132 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; histidine kinase, HAMP region domain protein; KEGG: ilo:IL2535 intracellular signaling protein (GAF,GGDEF domains); diguanylate cyclase 384315..386132 Shewanella sp. ANA-3 4479086 YP_868000.1 CDS Shewana3_0351 NC_008577.1 386284 386697 D PFAM: protein of unknown function UPF0153; KEGG: son:SO4354 hypothetical Fe-S-cluster oxidoreductase; hypothetical protein 386284..386697 Shewanella sp. ANA-3 4479087 YP_868001.1 CDS Shewana3_0352 NC_008577.1 386660 387499 R KEGG: son:SO4353 hypothetical protein; amino acid ABC transporter periplasmic protein complement(386660..387499) Shewanella sp. ANA-3 4479088 YP_868002.1 CDS Shewana3_0353 NC_008577.1 387672 388988 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: son:SO4351 CBS domain protein; hypothetical protein 387672..388988 Shewanella sp. ANA-3 4479089 YP_868003.1 CDS Shewana3_0354 NC_008577.1 389048 389920 R participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY complement(389048..389920) Shewanella sp. ANA-3 4479090 YP_868004.1 CDS Shewana3_0355 NC_008577.1 390117 391595 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 390117..391595 Shewanella sp. ANA-3 4479091 YP_868005.1 CDS Shewana3_0356 NC_008577.1 392186 393859 D catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 392186..393859 Shewanella sp. ANA-3 4479092 YP_868006.1 CDS ilvM NC_008577.1 393856 394116 D KEGG: son:SO4346 acetolactate synthase small subunit; acetolactate synthase 2 regulatory subunit 393856..394116 Shewanella sp. ANA-3 4479093 YP_868007.1 CDS Shewana3_0358 NC_008577.1 394196 396055 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 394196..396055 Shewanella sp. ANA-3 4479094 YP_868008.1 CDS Shewana3_0359 NC_008577.1 396057 397700 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 396057..397700 Shewanella sp. ANA-3 4479095 YP_868009.1 CDS Shewana3_0360 NC_008577.1 397843 398976 D PFAM: aminotransferase, class V; KEGG: son:SO4343 aminotransferase, class V; alanine-glyoxylate aminotransferase 397843..398976 Shewanella sp. ANA-3 4479096 YP_868010.1 CDS Shewana3_0361 NC_008577.1 398978 399271 D KEGG: son:SO4342 hypothetical protein; hypothetical protein 398978..399271 Shewanella sp. ANA-3 4479097 YP_868011.1 CDS Shewana3_0362 NC_008577.1 399616 399855 D hypothetical protein 399616..399855 Shewanella sp. ANA-3 4479098 YP_868012.1 CDS Shewana3_0363 NC_008577.1 400123 400650 D KEGG: vch:VC0810 hypothetical protein; hypothetical protein 400123..400650 Shewanella sp. ANA-3 4479099 YP_868013.1 CDS Shewana3_0364 NC_008577.1 400753 401550 R PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO4335 phosphatidylglycerophosphatase B, putative; phosphatidylglycerophosphatase complement(400753..401550) Shewanella sp. ANA-3 4479100 YP_868014.1 CDS Shewana3_0365 NC_008577.1 401643 403118 R PFAM: Inner membrane CreD family protein; KEGG: son:SO4334 inner membrane protein, putative; hypothetical protein complement(401643..403118) Shewanella sp. ANA-3 4478943 YP_868015.1 CDS Shewana3_0366 NC_008577.1 403281 403808 R KEGG: son:SO4333 hypothetical protein; hypothetical protein complement(403281..403808) Shewanella sp. ANA-3 4478944 YP_868016.1 CDS Shewana3_0367 NC_008577.1 404045 405211 D PFAM: protein of unknown function DUF1006; KEGG: son:SO4332 hypothetical protein; hypothetical protein 404045..405211 Shewanella sp. ANA-3 4478945 YP_868017.1 CDS Shewana3_0368 NC_008577.1 405208 405573 R KEGG: son:SO4331 hypothetical protein; hypothetical protein complement(405208..405573) Shewanella sp. ANA-3 4478946 YP_868018.1 CDS Shewana3_0369 NC_008577.1 405633 405965 R KEGG: son:SO4330 hypothetical protein; hypothetical protein complement(405633..405965) Shewanella sp. ANA-3 4478947 YP_868019.1 CDS Shewana3_0370 NC_008577.1 406060 406314 R PFAM: protein of unknown function DUF526; KEGG: son:SO4329 hypothetical protein; hypothetical protein complement(406060..406314) Shewanella sp. ANA-3 4478948 YP_868020.1 CDS Shewana3_0371 NC_008577.1 406431 409520 R PFAM: acriflavin resistance protein; KEGG: vvy:VV0037 putative multidrug resistance protein; acriflavin resistance protein complement(406431..409520) Shewanella sp. ANA-3 4478949 YP_868021.1 CDS Shewana3_0372 NC_008577.1 409534 410652 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO4327 HlyD family secretion domain protein; RND family efflux transporter MFP subunit complement(409534..410652) Shewanella sp. ANA-3 4478950 YP_868022.1 CDS Shewana3_0373 NC_008577.1 410678 411244 R PFAM: regulatory protein, TetR; KEGG: son:SO4326 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(410678..411244) Shewanella sp. ANA-3 4478951 YP_868023.1 CDS Shewana3_0374 NC_008577.1 411568 413583 D TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: son:SO4325 ATP-dependent DNA helicase Rep; ATP-dependent DNA helicase Rep 411568..413583 Shewanella sp. ANA-3 4478952 YP_868024.1 CDS Shewana3_0375 NC_008577.1 413613 416243 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: son:SO4324 GGDEF domain protein; GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(413613..416243) Shewanella sp. ANA-3 4478953 YP_868025.1 CDS Shewana3_0376 NC_008577.1 417068 418987 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO4323 GGDEF domain protein; diguanylate cyclase/phosphodiesterase complement(417068..418987) Shewanella sp. ANA-3 4478958 YP_868026.1 CDS Shewana3_0377 NC_008577.1 418996 419703 R KEGG: son:SO4322 hypothetical protein; hypothetical protein complement(418996..419703) Shewanella sp. ANA-3 4478959 YP_868027.1 CDS Shewana3_0378 NC_008577.1 419722 420330 R PFAM: OmpA/MotB domain protein; KEGG: son:SO4321 OmpA family protein; OmpA/MotB domain-containing protein complement(419722..420330) Shewanella sp. ANA-3 4478960 YP_868028.1 CDS Shewana3_0379 NC_008577.1 420327 421742 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: son:SO4320 agglutination protein; TolC family type I secretion outer membrane protein complement(420327..421742) Shewanella sp. ANA-3 4478961 YP_868029.1 CDS Shewana3_0380 NC_008577.1 421769 423151 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: son:SO4319 HlyD family secretion protein; HlyD family type I secretion membrane fusion protein complement(421769..423151) Shewanella sp. ANA-3 4478962 YP_868030.1 CDS Shewana3_0381 NC_008577.1 423148 425325 R PFAM: ABC transporter, transmembrane region; ABC transporter related; peptidase C39, bacteriocin processing; SMART: AAA ATPase; KEGG: son:SO4318 toxin secretion ATP-binding protein; ABC transporter-like protein complement(423148..425325) Shewanella sp. ANA-3 4478963 YP_868031.1 CDS Shewana3_0382 NC_008577.1 425414 442933 R TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor, type A; KEGG: eca:ECA3266 putative hemagglutinin/hemolysin-related protein; outer membrane adhesin like protein complement(425414..442933) Shewanella sp. ANA-3 4478964 YP_868032.1 CDS Shewana3_0383 NC_008577.1 443292 444458 R PFAM: HemY domain protein; KEGG: son:SO4316 HemY protein; HemY domain-containing protein complement(443292..444458) Shewanella sp. ANA-3 4478965 YP_868033.1 CDS Shewana3_0384 NC_008577.1 444455 445696 R PFAM: protein of unknown function DUF513, hemX; KEGG: son:SO4315 hemX protein; hypothetical protein complement(444455..445696) Shewanella sp. ANA-3 4478966 YP_868034.1 CDS Shewana3_0385 NC_008577.1 445757 446455 R PFAM: Uroporphyrinogen III synthase HEM4; KEGG: son:SO4314 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 complement(445757..446455) Shewanella sp. ANA-3 4478967 YP_868035.1 CDS hemC NC_008577.1 446502 447434 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(446502..447434) Shewanella sp. ANA-3 4478968 YP_868036.1 CDS cyaA NC_008577.1 447637 450051 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 447637..450051 Shewanella sp. ANA-3 4478969 YP_868037.1 CDS Shewana3_0388 NC_008577.1 450091 450420 R PFAM: Frataxin family protein; KEGG: son:SO4311 CyaY protein; frataxin family protein complement(450091..450420) Shewanella sp. ANA-3 4478970 YP_868038.1 CDS Shewana3_0389 NC_008577.1 450488 450682 D KEGG: son:SO4310 hypothetical protein; hypothetical protein 450488..450682 Shewanella sp. ANA-3 4478971 YP_868039.1 CDS Shewana3_0390 NC_008577.1 450725 451969 D TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: son:SO4309 diaminopimelate decarboxylase; diaminopimelate decarboxylase 450725..451969 Shewanella sp. ANA-3 4478972 YP_868040.1 CDS dapF NC_008577.1 452040 452867 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 452040..452867 Shewanella sp. ANA-3 4478973 YP_868041.1 CDS Shewana3_0392 NC_008577.1 452864 453499 D PFAM: protein of unknown function DUF484; KEGG: son:SO4307 hypothetical protein; hypothetical protein 452864..453499 Shewanella sp. ANA-3 4478974 YP_868042.1 CDS Shewana3_0393 NC_008577.1 453548 454447 D TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO4306 integrase/recombinase XerC; tyrosine recombinase XerC 453548..454447 Shewanella sp. ANA-3 4478975 YP_868043.1 CDS Shewana3_0394 NC_008577.1 454447 455169 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO4305 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; HAD family hydrolase 454447..455169 Shewanella sp. ANA-3 4478976 YP_868044.1 CDS Shewana3_0395 NC_008577.1 455318 455896 D PFAM: HupE/UreJ protein; KEGG: son:SO4304 urease accessory protein UreJ; HupE/UreJ protein 455318..455896 Shewanella sp. ANA-3 4478977 YP_868045.1 CDS Shewana3_0396 NC_008577.1 455901 456404 R PFAM: AAA-4 family protein; KEGG: son:SO4303 hypothetical protein; putative transcriptional regulator complement(455901..456404) Shewanella sp. ANA-3 4479303 YP_868046.1 CDS Shewana3_0397 NC_008577.1 456503 457249 R PFAM: Hemerythrin HHE cation binding domain protein; KEGG: son:SO4302 hypothetical protein; hemerythrin HHE cation binding domain-containing protein complement(456503..457249) Shewanella sp. ANA-3 4479304 YP_868047.1 CDS fis NC_008577.1 457504 457809 R Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis complement(457504..457809) Shewanella sp. ANA-3 4479305 YP_868048.1 CDS Shewana3_0399 NC_008577.1 457826 458794 R TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: son:SO0394 tRNA-dihydrouridine synthase B; nifR3 family TIM-barrel protein complement(457826..458794) Shewanella sp. ANA-3 4479306 YP_868049.1 CDS prmA NC_008577.1 458969 459850 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(458969..459850) Shewanella sp. ANA-3 4479307 YP_868050.1 CDS Shewana3_0401 NC_008577.1 460293 461018 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit 460293..461018 Shewanella sp. ANA-3 4479308 YP_868051.1 CDS Shewana3_0402 NC_008577.1 461225 461896 D PFAM: fumarate reductase respiratory complex, transmembrane subunit; KEGG: son:SO0397 fumarate reductase cytochrome B subunit; fumarate reductase respiratory complex, transmembrane subunit 461225..461896 Shewanella sp. ANA-3 4479309 YP_868052.1 CDS Shewana3_0403 NC_008577.1 461958 463964 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 461958..463964 Shewanella sp. ANA-3 4479310 YP_868053.1 CDS frdB NC_008577.1 463964 464695 D part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 463964..464695 Shewanella sp. ANA-3 4479311 YP_868054.1 CDS Shewana3_0405 NC_008577.1 464759 465043 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: son:SO0400 hypothetical protein; antibiotic biosynthesis monooxygenase complement(464759..465043) Shewanella sp. ANA-3 4479312 YP_868055.1 CDS Shewana3_0406 NC_008577.1 465040 466062 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO0401 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase complement(465040..466062) Shewanella sp. ANA-3 4479313 YP_868056.1 CDS Shewana3_0407 NC_008577.1 466181 467113 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0402 transcriptional regulator, LysR family; LysR family transcriptional regulator 466181..467113 Shewanella sp. ANA-3 4479314 YP_868057.1 CDS rho NC_008577.1 467291 468556 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(467291..468556) Shewanella sp. ANA-3 4479315 YP_868058.1 CDS Shewana3_0409 NC_008577.1 468768 469094 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: son:SO0406 thioredoxin 1; thioredoxin complement(468768..469094) Shewanella sp. ANA-3 4479316 YP_868059.1 CDS Shewana3_0410 NC_008577.1 469247 470566 D enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 469247..470566 Shewanella sp. ANA-3 4479317 YP_868060.1 CDS Shewana3_0411 NC_008577.1 470567 471493 D PFAM: Ppx/GppA phosphatase; KEGG: son:SO0408 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase; Ppx/GppA phosphatase 470567..471493 Shewanella sp. ANA-3 4479318 YP_868061.1 CDS Shewana3_0412 NC_008577.1 471568 472104 R KEGG: son:SO0409 hypothetical protein; hypothetical protein complement(471568..472104) Shewanella sp. ANA-3 4479319 YP_868062.1 CDS Shewana3_0413 NC_008577.1 472252 472650 R TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: son:SO0410 mutator mutT protein; mutator MutT protein complement(472252..472650) Shewanella sp. ANA-3 4479320 YP_868063.1 CDS Shewana3_0414 NC_008577.1 472685 472894 R PFAM: protein of unknown function DUF329; KEGG: son:SO0411 hypothetical protein; hypothetical protein complement(472685..472894) Shewanella sp. ANA-3 4479321 YP_868064.1 CDS Shewana3_0415 NC_008577.1 473002 473736 R PFAM: protein of unknown function DUF1342; KEGG: son:SO0412 hypothetical protein; hypothetical protein complement(473002..473736) Shewanella sp. ANA-3 4479322 YP_868065.1 CDS coaE NC_008577.1 473729 474346 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(473729..474346) Shewanella sp. ANA-3 4479323 YP_868066.1 CDS Shewana3_0417 NC_008577.1 474440 475369 R PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: son:SO0414 leader peptidase (prepilin peptidase)/N-methyltransferase; type 4 prepilin peptidase 1 complement(474440..475369) Shewanella sp. ANA-3 4479324 YP_868067.1 CDS Shewana3_0418 NC_008577.1 475431 476702 R PFAM: type II secretion system protein; KEGG: son:SO0415 type IV pilus biogenesis protein PilC; type II secretion system protein complement(475431..476702) Shewanella sp. ANA-3 4479325 YP_868068.1 CDS Shewana3_0419 NC_008577.1 476825 478534 R TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: son:SO0416 type IV pilus biogenesis protein PilB; type IV-A pilus assembly ATPase PilB complement(476825..478534) Shewanella sp. ANA-3 4479326 YP_868069.1 CDS Shewana3_0420 NC_008577.1 478842 480278 D PFAM: O-antigen polymerase; KEGG: sru:SRU_1271 pilin glycosylation enzyme, putative; O-antigen polymerase 478842..480278 Shewanella sp. ANA-3 4479327 YP_868070.1 CDS Shewana3_0421 NC_008577.1 480325 480753 R PFAM: methylation site containing protein; KEGG: son:SO0417 pilin, putative; methylation site containing protein complement(480325..480753) Shewanella sp. ANA-3 4479328 YP_868071.1 CDS Shewana3_0422 NC_008577.1 481358 482239 R TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; KEGG: ppr:PBPRA3199 nicotinate-nucleotide pyrophosphorylase; nicotinate-nucleotide pyrophosphorylase complement(481358..482239) Shewanella sp. ANA-3 4479329 YP_868072.1 CDS Shewana3_0423 NC_008577.1 482516 483061 D PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: son:SO0421 AmpD protein; N-acetyl-anhydromuranmyl-L-alanine amidase 482516..483061 Shewanella sp. ANA-3 4479330 YP_868073.1 CDS Shewana3_0424 NC_008577.1 483246 484097 D involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 483246..484097 Shewanella sp. ANA-3 4479331 YP_868074.1 CDS pdhR NC_008577.1 484423 485175 D activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 484423..485175 Shewanella sp. ANA-3 4479332 YP_868075.1 CDS aceE NC_008577.1 485256 487922 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 485256..487922 Shewanella sp. ANA-3 4479333 YP_868076.1 CDS Shewana3_0427 NC_008577.1 487935 489941 D TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: son:SO0425 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 487935..489941 Shewanella sp. ANA-3 4479334 YP_868077.1 CDS Shewana3_0428 NC_008577.1 490091 491518 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 490091..491518 Shewanella sp. ANA-3 4479335 YP_868078.1 CDS Shewana3_0429 NC_008577.1 491659 496122 D KEGG: son:SO0427 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 491659..496122 Shewanella sp. ANA-3 4479336 YP_868079.1 CDS Shewana3_0430 NC_008577.1 496353 498572 D PFAM: surface antigen (D15); Patatin; surface antigen variable number repeat protein; KEGG: son:SO0428 hypothetical protein; patatin 496353..498572 Shewanella sp. ANA-3 4479337 YP_868080.1 CDS Shewana3_0431 NC_008577.1 498784 500826 D PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: son:SO0429 peptidase, M13 family; peptidase M13 498784..500826 Shewanella sp. ANA-3 4479338 YP_868081.1 CDS Shewana3_0432 NC_008577.1 500896 501552 R YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase complement(500896..501552) Shewanella sp. ANA-3 4479339 YP_868082.1 CDS Shewana3_0433 NC_008577.1 501912 504584 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 501912..504584 Shewanella sp. ANA-3 4479340 YP_868083.1 CDS Shewana3_0434 NC_008577.1 504759 505256 R binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor complement(504759..505256) Shewanella sp. ANA-3 4479341 YP_868084.1 CDS hemE NC_008577.1 505704 506768 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 505704..506768 Shewanella sp. ANA-3 4479342 YP_868085.1 CDS Shewana3_0436 NC_008577.1 507146 509716 D KEGG: son:SO0437 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 507146..509716 Shewanella sp. ANA-3 4479343 YP_868086.1 CDS Shewana3_0437 NC_008577.1 509792 510595 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO0438 short chain dehydrogenase; short chain dehydrogenase 509792..510595 Shewanella sp. ANA-3 4479344 YP_868087.1 CDS Shewana3_0438 NC_008577.1 510599 510823 R KEGG: son:SO0439 hypothetical protein; hypothetical protein complement(510599..510823) Shewanella sp. ANA-3 4479345 YP_868088.1 CDS Shewana3_0439 NC_008577.1 510981 514202 R KEGG: son:SO0440 hypothetical protein; hypothetical protein complement(510981..514202) Shewanella sp. ANA-3 4479346 YP_868089.1 CDS Shewana3_0440 NC_008577.1 514383 515681 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(514383..515681) Shewanella sp. ANA-3 4479347 YP_868090.1 CDS purH NC_008577.1 515787 517385 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(515787..517385) Shewanella sp. ANA-3 4479348 YP_868091.1 CDS zntR NC_008577.1 517722 518195 D mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 517722..518195 Shewanella sp. ANA-3 4479349 YP_868092.1 CDS Shewana3_0443 NC_008577.1 518198 519691 D PFAM: permease; KEGG: son:SO0444 hypothetical protein; permease 518198..519691 Shewanella sp. ANA-3 4479350 YP_868093.1 CDS Shewana3_0444 NC_008577.1 519799 520686 R PFAM: band 7 protein; KEGG: son:SO0445 HflC protein, putative; hypothetical protein complement(519799..520686) Shewanella sp. ANA-3 4479351 YP_868094.1 CDS Shewana3_0445 NC_008577.1 521033 521287 D KEGG: son:SO0447 hypothetical protein; hypothetical protein 521033..521287 Shewanella sp. ANA-3 4476674 YP_868095.1 CDS Shewana3_0446 NC_008577.1 521291 521581 D KEGG: son:SO0448 hypothetical protein; hypothetical protein 521291..521581 Shewanella sp. ANA-3 4476675 YP_868096.1 CDS Shewana3_0447 NC_008577.1 521588 523207 D PFAM: PepSY-associated TM helix domain protein; KEGG: son:SO0449 hypothetical protein; response regulator receiver protein 521588..523207 Shewanella sp. ANA-3 4476676 YP_868097.1 CDS Shewana3_0448 NC_008577.1 523260 524432 R PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0450 major facilitator family protein; major facilitator superfamily transporter complement(523260..524432) Shewanella sp. ANA-3 4476677 YP_868098.1 CDS Shewana3_0449 NC_008577.1 524652 525695 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: vpa:VPA0476 hypothetical protein; GAF sensor-containing diguanylate cyclase complement(524652..525695) Shewanella sp. ANA-3 4476678 YP_868099.1 CDS Shewana3_0451 NC_008577.1 526350 527750 D TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vch:VCA0025 transporter, NadC family; anion transporter 526350..527750 Shewanella sp. ANA-3 4476680 YP_868100.1 CDS Shewana3_0452 NC_008577.1 527814 528236 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: son:SO0452 thioredoxin 2; thioredoxin complement(527814..528236) Shewanella sp. ANA-3 4476681 YP_868101.1 CDS Shewana3_0453 NC_008577.1 528426 528761 D PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO0453 peptidyl-prolyl cis-trans isomerase FkbP; peptidylprolyl isomerase, FKBP-type 528426..528761 Shewanella sp. ANA-3 4476682 YP_868102.1 CDS Shewana3_0454 NC_008577.1 528926 529912 D KEGG: chy:CHY_1906 sensory box/GGDEF domain/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 528926..529912 Shewanella sp. ANA-3 4476683 YP_868103.1 CDS Shewana3_0455 NC_008577.1 529962 530360 R KEGG: son:SO0454 hypothetical protein; hypothetical protein complement(529962..530360) Shewanella sp. ANA-3 4476684 YP_868104.1 CDS Shewana3_0456 NC_008577.1 530394 532427 R TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: son:SO0455 hypothetical transporter; TRAP transporter, 4TM/12TM fusion protein complement(530394..532427) Shewanella sp. ANA-3 4476685 YP_868105.1 CDS Shewana3_0457 NC_008577.1 532535 533491 R TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: son:SO0456 immunogenic-related protein; response regulator receiver protein complement(532535..533491) Shewanella sp. ANA-3 4476686 YP_868106.1 CDS Shewana3_0458 NC_008577.1 533985 534119 R KEGG: son:SO0458 hypothetical protein; hypothetical protein complement(533985..534119) Shewanella sp. ANA-3 4476687 YP_868107.1 CDS Shewana3_0459 NC_008577.1 534420 535913 R PFAM: protein of unknown function DUF853, NPT hydrolase putative; KEGG: son:SO0459 hypothetical protein; hypothetical protein complement(534420..535913) Shewanella sp. ANA-3 4476688 YP_868108.1 CDS Shewana3_0460 NC_008577.1 536107 536340 D KEGG: son:SO0461 hypothetical protein; hypothetical protein 536107..536340 Shewanella sp. ANA-3 4476689 YP_868109.1 CDS Shewana3_0461 NC_008577.1 536352 536777 D KEGG: son:SO0462 hypothetical protein; hypothetical protein 536352..536777 Shewanella sp. ANA-3 4476690 YP_868110.1 CDS Shewana3_0462 NC_008577.1 536825 537703 D PFAM: protein of unknown function, zinc metallopeptidase putative; KEGG: son:SO0463 hypothetical protein; hypothetical protein 536825..537703 Shewanella sp. ANA-3 4476691 YP_868111.1 CDS Shewana3_0463 NC_008577.1 537734 538141 D PFAM: NUDIX hydrolase; KEGG: son:SO0464 MutT/nudix family protein; NUDIX hydrolase 537734..538141 Shewanella sp. ANA-3 4476692 YP_868112.1 CDS Shewana3_0464 NC_008577.1 538433 538771 R hypothetical protein complement(538433..538771) Shewanella sp. ANA-3 4476693 YP_868113.1 CDS Shewana3_0465 NC_008577.1 539427 540026 R hypothetical protein complement(539427..540026) Shewanella sp. ANA-3 4476694 YP_868114.1 CDS Shewana3_0467 NC_008577.1 541429 543396 R KEGG: vvy:VVA0185 hypothetical protein; hypothetical protein complement(541429..543396) Shewanella sp. ANA-3 4476696 YP_868115.1 CDS Shewana3_0468 NC_008577.1 543640 544560 R PFAM: response regulator receiver; KEGG: bja:blr0877 two-component response regulator; putative transcriptional regulator CadC complement(543640..544560) Shewanella sp. ANA-3 4476697 YP_868116.1 CDS uvrD NC_008577.1 544732 546900 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 544732..546900 Shewanella sp. ANA-3 4476698 YP_868117.1 CDS ubiA NC_008577.1 547026 547886 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 547026..547886 Shewanella sp. ANA-3 4476699 YP_868118.1 CDS Shewana3_0471 NC_008577.1 547973 548398 R KEGG: son:SO0468.1 hypothetical protein; hypothetical protein complement(547973..548398) Shewanella sp. ANA-3 4476700 YP_868119.1 CDS Shewana3_0472 NC_008577.1 548466 550079 R KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase complement(548466..550079) Shewanella sp. ANA-3 4476701 YP_868120.1 CDS Shewana3_0473 NC_008577.1 550183 550599 R KEGG: son:SO0470 hypothetical protein; hypothetical protein complement(550183..550599) Shewanella sp. ANA-3 4476702 YP_868121.1 CDS Shewana3_0474 NC_008577.1 550973 552034 D PFAM: 2-nitropropane dioxygenase, NPD; KEGG: son:SO0471 hypothetical dioxygenase; 2-nitropropane dioxygenase 550973..552034 Shewanella sp. ANA-3 4476703 YP_868122.1 CDS Shewana3_0475 NC_008577.1 552181 553326 D hypothetical protein 552181..553326 Shewanella sp. ANA-3 4476704 YP_868123.1 CDS Shewana3_0476 NC_008577.1 553569 554489 D PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: cps:CPS_0994 hypothetical protein; redoxin domain-containing protein 553569..554489 Shewanella sp. ANA-3 4476705 YP_868124.1 CDS Shewana3_0477 NC_008577.1 554705 555811 D PFAM: protein of unknown function UPF0118; KEGG: son:SO0472 hypothetical protein; hypothetical protein 554705..555811 Shewanella sp. ANA-3 4476706 YP_868125.1 CDS Shewana3_0478 NC_008577.1 555808 556098 R KEGG: xcv:XCV4020 putative mitomycin resistance protein; putative mitomycin resistance protein complement(555808..556098) Shewanella sp. ANA-3 4476707 YP_868126.1 CDS Shewana3_0479 NC_008577.1 556165 557217 R PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO4003 response regulator; response regulator receiver modulated metal dependent phosphohydrolase complement(556165..557217) Shewanella sp. ANA-3 4476708 YP_868127.1 CDS Shewana3_0480 NC_008577.1 557774 562834 D KEGG: son:SO4002 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein, family 3; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 557774..562834 Shewanella sp. ANA-3 4476709 YP_868128.1 CDS Shewana3_0481 NC_008577.1 562825 564396 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO3999 sensor histidine kinase; response regulator receiver protein 562825..564396 Shewanella sp. ANA-3 4476710 YP_868129.1 CDS Shewana3_0482 NC_008577.1 564442 566502 R PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: bbr:BB3096 putative peptidase; peptidase S9 prolyl oligopeptidase complement(564442..566502) Shewanella sp. ANA-3 4476711 YP_868130.1 CDS Shewana3_0483 NC_008577.1 566660 567178 D hypothetical protein 566660..567178 Shewanella sp. ANA-3 4476712 YP_868131.1 CDS Shewana3_0484 NC_008577.1 567175 567408 D SMART: helix-turn-helix domain protein; KEGG: plu:plu3627 putative transcriptional regulator; XRE family transcriptional regulator 567175..567408 Shewanella sp. ANA-3 4476713 YP_868132.1 CDS Shewana3_0485 NC_008577.1 567453 568031 R KEGG: son:SO0474 hypothetical protein; hypothetical protein complement(567453..568031) Shewanella sp. ANA-3 4476714 YP_868133.1 CDS Shewana3_0486 NC_008577.1 568287 568871 R PFAM: Redoxin domain protein; KEGG: son:SO0476 thioredoxin, putative; redoxin domain-containing protein complement(568287..568871) Shewanella sp. ANA-3 4476715 YP_868134.1 CDS Shewana3_0487 NC_008577.1 568921 569340 R PFAM: cytochrome C biogenesis protein; KEGG: son:SO0477 cytochrome c-type biogenesis protein NrfF precursor; cytochrome C biogenesis protein complement(568921..569340) Shewanella sp. ANA-3 4476716 YP_868135.1 CDS Shewana3_0488 NC_008577.1 569337 571376 R TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: son:SO0478 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF complement(569337..571376) Shewanella sp. ANA-3 4476717 YP_868136.1 CDS Shewana3_0489 NC_008577.1 571892 574021 D KEGG: son:SO0479 cytochrome c, putative; cytochrome c 571892..574021 Shewanella sp. ANA-3 4476718 YP_868137.1 CDS Shewana3_0490 NC_008577.1 574080 574523 D SMART: Rhodanese domain protein; KEGG: son:SO0480 hypothetical protein; rhodanese domain-containing protein 574080..574523 Shewanella sp. ANA-3 4476719 YP_868138.1 CDS Shewana3_0491 NC_008577.1 574617 575396 D PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: son:SO0481 peptidyl-prolyl cis-trans isomerase, FKBP-type; FKBP-type peptidyl-prolyl isomerase domain-containing protein 574617..575396 Shewanella sp. ANA-3 4476720 YP_868139.1 CDS Shewana3_0492 NC_008577.1 575461 576135 D KEGG: son:SO0482 formate-dependent nitrite reductase, NrfG protein; formate-dependent nitrite reductase complex subunit NrfG 575461..576135 Shewanella sp. ANA-3 4476721 YP_868140.1 CDS Shewana3_0493 NC_008577.1 576222 576929 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO0483 formate-dependent nitrite reductase, NrfC protein; 4Fe-4S ferredoxin 576222..576929 Shewanella sp. ANA-3 4476722 YP_868141.1 CDS Shewana3_0494 NC_008577.1 576932 577879 D PFAM: Polysulphide reductase, NrfD; KEGG: son:SO0484 formate-dependent nitrite reductase, NrfD protein; polysulfide reductase, NrfD 576932..577879 Shewanella sp. ANA-3 4476723 YP_868142.1 CDS Shewana3_0496 NC_008577.1 578480 579754 D PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: son:SO0486 copper ABC transporter, periplasmic copper-binding protein; copper-binding protein 578480..579754 Shewanella sp. ANA-3 4476725 YP_868143.1 CDS Shewana3_0497 NC_008577.1 579751 580797 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0487 copper ABC transporter, ATP-binding protein; ABC transporter-like protein 579751..580797 Shewanella sp. ANA-3 4479688 YP_868144.1 CDS Shewana3_0498 NC_008577.1 580794 581681 D KEGG: son:SO0488 copper ABC transporter, permease protein; copper ABC transporter permease 580794..581681 Shewanella sp. ANA-3 4479689 YP_868145.1 CDS Shewana3_0499 NC_008577.1 581895 583178 D PFAM: transcriptional regulator domain protein; KEGG: son:SO0490 transcriptional regulator; transcriptional regulator 581895..583178 Shewanella sp. ANA-3 4479690 YP_868146.1 CDS Shewana3_0500 NC_008577.1 583428 585560 D PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: son:SO0491 peptidase, M13 family; peptidase M13 583428..585560 Shewanella sp. ANA-3 4479691 YP_868147.1 CDS Shewana3_0501 NC_008577.1 585602 587995 R PFAM: fatty acid cistrans isomerase; KEGG: vvy:VVA0636 fatty acid cis/trans isomerase; fatty acid cistrans isomerase complement(585602..587995) Shewanella sp. ANA-3 4479692 YP_868148.1 CDS Shewana3_0502 NC_008577.1 588256 593202 D PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: son:SO4539 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin 588256..593202 Shewanella sp. ANA-3 4479693 YP_868149.1 CDS Shewana3_0503 NC_008577.1 593352 593978 D KEGG: son:SO0492 hypothetical flavoprotein oxygenase; flavoprotein oxygenase 593352..593978 Shewanella sp. ANA-3 4479694 YP_868150.1 CDS Shewana3_0504 NC_008577.1 595234 596148 D hypothetical protein 595234..596148 Shewanella sp. ANA-3 4479695 YP_868151.1 CDS fre NC_008577.1 596416 597114 R NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase complement(596416..597114) Shewanella sp. ANA-3 4479696 YP_868152.1 CDS Shewana3_0506 NC_008577.1 597225 598706 R TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: son:SO0506 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(597225..598706) Shewanella sp. ANA-3 4479697 YP_868153.1 CDS Shewana3_0507 NC_008577.1 598865 599635 D KEGG: son:SO0508 hypothetical protein; hypothetical protein 598865..599635 Shewanella sp. ANA-3 4479698 YP_868154.1 CDS Shewana3_0508 NC_008577.1 599727 600944 D PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr4870 MFS permease; major facilitator superfamily transporter 599727..600944 Shewanella sp. ANA-3 4479699 YP_868155.1 CDS Shewana3_0509 NC_008577.1 601031 601708 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO0510 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(601031..601708) Shewanella sp. ANA-3 4479700 YP_868156.1 CDS Shewana3_0510 NC_008577.1 601736 602191 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: son:SO0511 acetyl-CoA carboxylase, biotin carboxyl carrier protein; biotin carboxyl carrier protein complement(601736..602191) Shewanella sp. ANA-3 4479701 YP_868157.1 CDS Shewana3_0511 NC_008577.1 602225 602659 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(602225..602659) Shewanella sp. ANA-3 4479702 YP_868158.1 CDS Shewana3_0512 NC_008577.1 602761 603174 R PFAM: Class I peptide chain release factor; KEGG: son:SO0513 hypothetical protein; peptidyl-tRNA hydrolase domain-containing protein complement(602761..603174) Shewanella sp. ANA-3 4479703 YP_868159.1 CDS Shewana3_0513 NC_008577.1 603323 603688 D KEGG: son:SO0514 hypothetical protein; hypothetical protein 603323..603688 Shewanella sp. ANA-3 4479704 YP_868160.1 CDS Shewana3_0514 NC_008577.1 603725 603928 D KEGG: son:SO0515 hypothetical protein; hypothetical protein 603725..603928 Shewanella sp. ANA-3 4479705 YP_868161.1 CDS Shewana3_0515 NC_008577.1 604093 604542 D KEGG: son:SO0516 hypothetical protein; hypothetical protein 604093..604542 Shewanella sp. ANA-3 4479706 YP_868162.1 CDS Shewana3_0516 NC_008577.1 604751 606121 D KEGG: son:SO0518 outer membrane efflux family protein, putative; outer membrane efflux family protein 604751..606121 Shewanella sp. ANA-3 4479707 YP_868163.1 CDS Shewana3_0517 NC_008577.1 606137 607417 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO0519 cation efflux protein, putative; RND family efflux transporter MFP subunit 606137..607417 Shewanella sp. ANA-3 4479708 YP_868164.1 CDS Shewana3_0518 NC_008577.1 607495 610707 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: son:SO0520 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 607495..610707 Shewanella sp. ANA-3 4479709 YP_868165.1 CDS Shewana3_0519 NC_008577.1 610837 611160 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: son:SO0521 hypothetical protein; antibiotic biosynthesis monooxygenase 610837..611160 Shewanella sp. ANA-3 4479710 YP_868166.1 CDS mscL NC_008577.1 611243 611653 R forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(611243..611653) Shewanella sp. ANA-3 4479711 YP_868167.1 CDS Shewana3_0521 NC_008577.1 611838 612791 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0523 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(611838..612791) Shewanella sp. ANA-3 4479712 YP_868168.1 CDS Shewana3_0522 NC_008577.1 612889 613944 D PFAM: secretion protein HlyD family protein; KEGG: son:SO0524 HlyD family secretion protein; secretion protein HlyD family protein 612889..613944 Shewanella sp. ANA-3 4479713 YP_868169.1 CDS Shewana3_0523 NC_008577.1 613958 615565 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0525 drug resistance transporter, EmrB/QacA family protein; EmrB/QacA family drug resistance transporter 613958..615565 Shewanella sp. ANA-3 4479714 YP_868170.1 CDS Shewana3_0524 NC_008577.1 615692 616165 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0526 acetyltransferase, GNAT family; N-acetyltransferase GCN5 615692..616165 Shewanella sp. ANA-3 4479715 YP_868171.1 CDS Shewana3_0525 NC_008577.1 616209 616535 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: son:SO0527 hypothetical protein; antibiotic biosynthesis monooxygenase 616209..616535 Shewanella sp. ANA-3 4479716 YP_868172.1 CDS Shewana3_0526 NC_008577.1 616916 618280 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: noc:Noc_1911 two component sigma-54 specific, transcriptional regulator, fis family; sigma-54 dependent trancsriptional regulator 616916..618280 Shewanella sp. ANA-3 4479717 YP_868173.1 CDS Shewana3_0527 NC_008577.1 618531 620195 D KEGG: vpa:VPA0990 hypothetical protein; hypothetical protein 618531..620195 Shewanella sp. ANA-3 4479718 YP_868174.1 CDS Shewana3_0528 NC_008577.1 620256 622217 R PFAM: Peptidase M11, gametolysin; KEGG: vpa:VPA0991 hypothetical protein; peptidase M11, gametolysin complement(620256..622217) Shewanella sp. ANA-3 4479719 YP_868175.1 CDS Shewana3_0529 NC_008577.1 623259 624098 D hypothetical protein 623259..624098 Shewanella sp. ANA-3 4479720 YP_868176.1 CDS Shewana3_0530 NC_008577.1 624333 625199 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0529 trpba operon transcriptional activator; LysR family transcriptional regulator complement(624333..625199) Shewanella sp. ANA-3 4479721 YP_868177.1 CDS Shewana3_0531 NC_008577.1 625299 625910 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO0530 transporter, LysE family; lysine exporter protein LysE/YggA 625299..625910 Shewanella sp. ANA-3 4479722 YP_868178.1 CDS Shewana3_0532 NC_008577.1 626411 626755 D PFAM: regulatory protein, ArsR; KEGG: son:SO0532 arsenical resistence operon repressor; ArsR family transcriptional regulator 626411..626755 Shewanella sp. ANA-3 4476493 YP_868179.1 CDS Shewana3_0533 NC_008577.1 626796 627815 D PFAM: Bile acid:sodium symporter; KEGG: son:SO0534 arsenical pump membrane protein, putative; bile acid:sodium symporter 626796..627815 Shewanella sp. ANA-3 4476494 YP_868180.1 CDS Shewana3_0534 NC_008577.1 627881 628894 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 627881..628894 Shewanella sp. ANA-3 4476495 YP_868181.1 CDS Shewana3_0535 NC_008577.1 628904 630172 D PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0539 transporter, putative; major facilitator superfamily transporter 628904..630172 Shewanella sp. ANA-3 4476496 YP_868182.1 CDS Shewana3_0536 NC_008577.1 630177 631040 D KEGG: son:SO0540 hypothetical protein; hypothetical protein 630177..631040 Shewanella sp. ANA-3 4476497 YP_868183.1 CDS Shewana3_0537 NC_008577.1 631159 632601 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: son:SO0541 metallo-beta-lactamase family protein; aspartate kinase 631159..632601 Shewanella sp. ANA-3 4476498 YP_868184.1 CDS Shewana3_0538 NC_008577.1 632683 633102 D hypothetical protein 632683..633102 Shewanella sp. ANA-3 4476499 YP_868185.1 CDS Shewana3_0539 NC_008577.1 633170 634525 R TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1704; KEGG: son:SO0542 hypothetical protein; hypothetical protein complement(633170..634525) Shewanella sp. ANA-3 4476500 YP_868186.1 CDS Shewana3_0540 NC_008577.1 634806 635768 D KEGG: cjr:CJE1262 general glycosylation pathway protein; hypothetical protein 634806..635768 Shewanella sp. ANA-3 4476501 YP_868187.1 CDS Shewana3_0541 NC_008577.1 635873 636049 R KEGG: son:SO0543 hypothetical protein; hypothetical protein complement(635873..636049) Shewanella sp. ANA-3 4476502 YP_868188.1 CDS Shewana3_0542 NC_008577.1 636365 638524 D KEGG: son:SO0544 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 636365..638524 Shewanella sp. ANA-3 4476503 YP_868189.1 CDS Shewana3_0543 NC_008577.1 638521 638955 D PFAM: response regulator receiver; KEGG: son:SO0544.1 hypothetical CheY-homologous receiver domain protein; response regulator receiver protein 638521..638955 Shewanella sp. ANA-3 4476504 YP_868190.1 CDS Shewana3_0544 NC_008577.1 638965 640683 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: son:SO0545 response regulator; response regulator receiver modulated diguanylate cyclase/phosphodiesterase 638965..640683 Shewanella sp. ANA-3 4476505 YP_868191.1 CDS Shewana3_0545 NC_008577.1 640850 641755 D TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO0546 ribosomal protein S6 modification protein; alpha-L-glutamate ligase 640850..641755 Shewanella sp. ANA-3 4476506 YP_868192.1 CDS Shewana3_0546 NC_008577.1 641818 642510 R TIGRFAM: conserved hypothetical protein; KEGG: son:SO0547 hypothetical protein; hypothetical protein complement(641818..642510) Shewanella sp. ANA-3 4476507 YP_868193.1 CDS Shewana3_0547 NC_008577.1 642800 643072 R PFAM: histone family protein DNA-binding protein; KEGG: son:SO0548 DNA-binding protein, HU family; histone family protein DNA-binding protein complement(642800..643072) Shewanella sp. ANA-3 4476508 YP_868194.1 CDS Shewana3_0549 NC_008577.1 644091 644555 R KEGG: son:SO0550 hypothetical protein; hypothetical protein complement(644091..644555) Shewanella sp. ANA-3 4476510 YP_868195.1 CDS Shewana3_0550 NC_008577.1 644599 645108 D KEGG: son:SO0551 hypothetical protein; hypothetical protein 644599..645108 Shewanella sp. ANA-3 4476511 YP_868196.1 CDS Shewana3_0551 NC_008577.1 645115 645429 R KEGG: son:SO0552 hypothetical protein; hypothetical protein complement(645115..645429) Shewanella sp. ANA-3 4476512 YP_868197.1 CDS Shewana3_0552 NC_008577.1 645579 645887 R KEGG: son:SO0553 hypothetical protein; hypothetical protein complement(645579..645887) Shewanella sp. ANA-3 4476513 YP_868198.1 CDS Shewana3_0553 NC_008577.1 646160 646684 D KEGG: son:SO0554 hypothetical protein; hypothetical protein 646160..646684 Shewanella sp. ANA-3 4476514 YP_868199.1 CDS Shewana3_0554 NC_008577.1 646700 648454 R PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: son:SO0555 hypothetical protein; diguanylate cyclase/phosphodiesterase complement(646700..648454) Shewanella sp. ANA-3 4476515 YP_868200.1 CDS Shewana3_0555 NC_008577.1 648593 648901 R KEGG: son:SO0556 hypothetical protein; hypothetical protein complement(648593..648901) Shewanella sp. ANA-3 4476516 YP_868201.1 CDS Shewana3_0556 NC_008577.1 648950 649846 D PFAM: GumN family protein; KEGG: son:SO0557 hypothetical protein; GumN family protein 648950..649846 Shewanella sp. ANA-3 4476517 YP_868202.1 CDS Shewana3_0557 NC_008577.1 649989 650774 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0558 smtA protein; type 11 methyltransferase complement(649989..650774) Shewanella sp. ANA-3 4476518 YP_868203.1 CDS Shewana3_0558 NC_008577.1 651139 652002 D PFAM: MaoC domain protein dehydratase; KEGG: son:SO0559 MaoC domain protein; dehydratase 651139..652002 Shewanella sp. ANA-3 4476519 YP_868204.1 CDS Shewana3_0559 NC_008577.1 652057 652947 R PFAM: aldo/keto reductase; KEGG: vpa:VPA1163 oxidoreductase, aldo/keto reductase 2 family; aldo/keto reductase complement(652057..652947) Shewanella sp. ANA-3 4476520 YP_868205.1 CDS Shewana3_0560 NC_008577.1 653188 654900 D catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 653188..654900 Shewanella sp. ANA-3 4476521 YP_868206.1 CDS Shewana3_0561 NC_008577.1 654980 656635 R PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO0560.2 hypothetical small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS complement(654980..656635) Shewanella sp. ANA-3 4476522 YP_868207.1 CDS Shewana3_0562 NC_008577.1 656857 657186 D KEGG: son:SO0562 hypothetical protein; hypothetical protein 656857..657186 Shewanella sp. ANA-3 4476523 YP_868208.1 CDS Shewana3_0563 NC_008577.1 657267 657392 R KEGG: son:SO0563 hypothetical protein; hypothetical protein complement(657267..657392) Shewanella sp. ANA-3 4476524 YP_868209.1 CDS Shewana3_0564 NC_008577.1 657648 657938 D hypothetical protein 657648..657938 Shewanella sp. ANA-3 4476525 YP_868210.1 CDS Shewana3_0565 NC_008577.1 658020 659201 D KEGG: son:SO0564 hypothetical protein; hypothetical protein 658020..659201 Shewanella sp. ANA-3 4476526 YP_868211.1 CDS Shewana3_0566 NC_008577.1 659185 660093 D PFAM: periplasmic solute binding protein; KEGG: son:SO0565 adhesion protein, putative; periplasmic solute binding protein 659185..660093 Shewanella sp. ANA-3 4476527 YP_868212.1 CDS Shewana3_0567 NC_008577.1 660098 660865 D PFAM: ABC-3 protein; KEGG: son:SO0566 ABC 3 transport family protein; ABC-3 protein 660098..660865 Shewanella sp. ANA-3 4476528 YP_868213.1 CDS Shewana3_0568 NC_008577.1 661022 661804 D TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0567 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 661022..661804 Shewanella sp. ANA-3 4476529 YP_868214.1 CDS Shewana3_0569 NC_008577.1 661848 662255 D PFAM: protein of unknown function DUF1260; KEGG: son:SO0568 hypothetical protein; hypothetical protein 661848..662255 Shewanella sp. ANA-3 4476530 YP_868215.1 CDS Shewana3_0570 NC_008577.1 662313 663287 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO0569 sensory box/GGDEF family protein; diguanylate cyclase complement(662313..663287) Shewanella sp. ANA-3 4476531 YP_868216.1 CDS Shewana3_0571 NC_008577.1 663306 664301 R PFAM: response regulator receiver; KEGG: son:SO0570 response regulator; response regulator receiver protein complement(663306..664301) Shewanella sp. ANA-3 4476532 YP_868217.1 CDS Shewana3_0572 NC_008577.1 664860 665666 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 664860..665666 Shewanella sp. ANA-3 4476533 YP_868218.1 CDS Shewana3_0573 NC_008577.1 665732 666691 R KEGG: son:SO0573 hypothetical protein; hypothetical protein complement(665732..666691) Shewanella sp. ANA-3 4476534 YP_868219.1 CDS Shewana3_0574 NC_008577.1 666930 669836 R transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA complement(666930..669836) Shewanella sp. ANA-3 4476535 YP_868220.1 CDS Shewana3_0575 NC_008577.1 670239 671633 D PFAM: PhoH family protein; SMART: AAA ATPase; Nucleotide binding protein, PINc; KEGG: son:SO0576 PhoH family protein; PhoH family protein 670239..671633 Shewanella sp. ANA-3 4476536 YP_868221.1 CDS Shewana3_0576 NC_008577.1 671854 675564 D KEGG: son:SO0577 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Cache domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 671854..675564 Shewanella sp. ANA-3 4476537 YP_868222.1 CDS Shewana3_0577 NC_008577.1 675647 678049 D KEGG: son:SO0578 hypothetical protein; hypothetical protein 675647..678049 Shewanella sp. ANA-3 4476538 YP_868223.1 CDS Shewana3_0578 NC_008577.1 678090 679898 R PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: son:SO0579 serine/threonine protein kinase, putative; serine/threonine protein kinase complement(678090..679898) Shewanella sp. ANA-3 4476539 YP_868224.1 CDS Shewana3_0579 NC_008577.1 680146 680484 D KEGG: son:SO0581 hypothetical protein; hypothetical protein 680146..680484 Shewanella sp. ANA-3 4476540 YP_868225.1 CDS Shewana3_0580 NC_008577.1 680592 681248 D catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 680592..681248 Shewanella sp. ANA-3 4476541 YP_868226.1 CDS Shewana3_0581 NC_008577.1 681448 681639 R PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: son:SO0583 bacterioferritin-associated ferredoxin; BFD/(2Fe-2S)-binding domain-containing protein complement(681448..681639) Shewanella sp. ANA-3 4476542 YP_868227.1 CDS Shewana3_0582 NC_008577.1 681888 683462 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: son:SO0584 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 681888..683462 Shewanella sp. ANA-3 4476543 YP_868228.1 CDS Shewana3_0583 NC_008577.1 683607 684539 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO0585 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase complement(683607..684539) Shewanella sp. ANA-3 4476544 YP_868229.1 CDS Shewana3_0584 NC_008577.1 684630 684965 D KEGG: son:SO0586 hypothetical protein; hypothetical protein 684630..684965 Shewanella sp. ANA-3 4476545 YP_868230.1 CDS Shewana3_0585 NC_008577.1 684989 685711 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: son:SO0587 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(684989..685711) Shewanella sp. ANA-3 4476616 YP_868231.1 CDS Shewana3_0586 NC_008577.1 685727 688930 R PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO0588 transporter, putative; mechanosensitive ion channel protein MscS complement(685727..688930) Shewanella sp. ANA-3 4476617 YP_868232.1 CDS Shewana3_0587 NC_008577.1 688999 689883 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_3514 membrane protein; hypothetical protein complement(688999..689883) Shewanella sp. ANA-3 4476618 YP_868233.1 CDS psd NC_008577.1 689898 690776 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase complement(689898..690776) Shewanella sp. ANA-3 4476619 YP_868234.1 CDS Shewana3_0589 NC_008577.1 690857 691921 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(690857..691921) Shewanella sp. ANA-3 4476620 YP_868235.1 CDS Shewana3_0590 NC_008577.1 692034 692579 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 692034..692579 Shewanella sp. ANA-3 4476621 YP_868236.1 CDS Shewana3_0591 NC_008577.1 693763 694218 D KEGG: son:SO0595 hypothetical protein; hypothetical protein 693763..694218 Shewanella sp. ANA-3 4476626 YP_868237.1 CDS Shewana3_0592 NC_008577.1 694463 695962 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: son:SO0598 YjeF protein; carbohydrate kinase 694463..695962 Shewanella sp. ANA-3 4476627 YP_868238.1 CDS Shewana3_0593 NC_008577.1 696042 696500 D PFAM: protein of unknown function UPF0079; KEGG: son:SO0599 conserved hypothetical protein TIGR00150; hypothetical protein 696042..696500 Shewanella sp. ANA-3 4476628 YP_868239.1 CDS Shewana3_0594 NC_008577.1 696509 697900 D PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: son:SO0600 N-acetylmuramoyl-L-alanine amidase; cell wall hydrolase/autolysin 696509..697900 Shewanella sp. ANA-3 4476629 YP_868240.1 CDS mutL NC_008577.1 697914 699860 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 697914..699860 Shewanella sp. ANA-3 4476630 YP_868241.1 CDS miaA NC_008577.1 699889 700779 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 699889..700779 Shewanella sp. ANA-3 4476631 YP_868242.1 CDS Shewana3_0597 NC_008577.1 700872 701144 D TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: son:SO0603 host factor-I protein; RNA-binding protein Hfq 700872..701144 Shewanella sp. ANA-3 4476632 YP_868243.1 CDS Shewana3_0598 NC_008577.1 701168 702475 D PFAM: GTP-binding protein, HSR1-related; KEGG: son:SO0604 GTP-binding protein HflX; HSR1-like GTP-binding protein 701168..702475 Shewanella sp. ANA-3 4476633 YP_868244.1 CDS Shewana3_0599 NC_008577.1 702512 703657 D TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: son:SO0605 hflK protein; HflK protein 702512..703657 Shewanella sp. ANA-3 4476634 YP_868245.1 CDS Shewana3_0600 NC_008577.1 703661 704554 D TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: son:SO0606 hflC protein; HflC protein 703661..704554 Shewanella sp. ANA-3 4476635 YP_868246.1 CDS Shewana3_0601 NC_008577.1 704923 705513 D TIGRFAM: Twin-arginine translocation pathway signal; ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: son:SO0608 ubiquinol-cytochrome c reductase iron-sulfur subunit; ubiquinol-cytochrome c reductase, iron-sulfur subunit 704923..705513 Shewanella sp. ANA-3 4476636 YP_868247.1 CDS Shewana3_0602 NC_008577.1 705513 706727 D PFAM: Cytochrome b/b6, N-terminal domain protein; Cytochrome b/b6, C-terminal domain protein; KEGG: son:SO0609 ubiquinol-cytochrome c reductase, cytochrome b; cytochrome b/b6 domain-containing protein 705513..706727 Shewanella sp. ANA-3 4476637 YP_868248.1 CDS Shewana3_0603 NC_008577.1 706727 707425 D PFAM: cytochrome c1; KEGG: son:SO0610 ubiquinol-cytochrome c reductase cytochrome c1 subunit; cytochrome c1 706727..707425 Shewanella sp. ANA-3 4476638 YP_868249.1 CDS sspA NC_008577.1 707522 708151 D transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 707522..708151 Shewanella sp. ANA-3 4476814 YP_868250.1 CDS Shewana3_0605 NC_008577.1 708151 708588 D PFAM: Stringent starvation protein B; KEGG: son:SO0612 stringent starvation protein b; ClpXP protease specificity-enhancing factor 708151..708588 Shewanella sp. ANA-3 4476815 YP_868251.1 CDS Shewana3_0606 NC_008577.1 708744 709319 D TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: son:SO0613 para-aminobenzoate synthase glutamine amidotransferase, component II; aminodeoxychorismate synthase, glutamine amidotransferase subunit 708744..709319 Shewanella sp. ANA-3 4476816 YP_868252.1 CDS Shewana3_0607 NC_008577.1 709775 712255 D PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO0614 dipeptidyl peptidase IV, putative; peptidase S9 prolyl oligopeptidase 709775..712255 Shewanella sp. ANA-3 4476817 YP_868253.1 CDS Shewana3_0608 NC_008577.1 712455 713600 D KEGG: son:SO0615 hypothetical protein; putative signal transduction protein 712455..713600 Shewanella sp. ANA-3 4476818 YP_868254.1 CDS Shewana3_0609 NC_008577.1 713656 714567 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: son:SO0616 esterase, putative; alpha/beta hydrolase domain-containing protein 713656..714567 Shewanella sp. ANA-3 4476819 YP_868255.1 CDS argD NC_008577.1 714876 716093 D DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 714876..716093 Shewanella sp. ANA-3 4476820 YP_868256.1 CDS Shewana3_0611 NC_008577.1 716221 717240 D PFAM: arginine N-succinyltransferase beta subunit; KEGG: son:SO0618 arginine N-succinyltransferase; arginine succinyltransferase 716221..717240 Shewanella sp. ANA-3 4476821 YP_868257.1 CDS astD NC_008577.1 717250 718713 D a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 717250..718713 Shewanella sp. ANA-3 4476822 YP_868258.1 CDS Shewana3_0613 NC_008577.1 718878 719681 D KEGG: son:SO0620 hypothetical protein; hypothetical protein 718878..719681 Shewanella sp. ANA-3 4476823 YP_868259.1 CDS Shewana3_0614 NC_008577.1 719821 721149 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO0621 sensor histidine kinase; ATPase domain-containing protein complement(719821..721149) Shewanella sp. ANA-3 4476824 YP_868260.1 CDS Shewana3_0615 NC_008577.1 721146 721820 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO0622 DNA-binding response regulator; two component transcriptional regulator complement(721146..721820) Shewanella sp. ANA-3 4476825 YP_868261.1 CDS Shewana3_0616 NC_008577.1 721801 722148 R KEGG: son:SO0623 hypothetical protein; hypothetical protein complement(721801..722148) Shewanella sp. ANA-3 4476826 YP_868262.1 CDS Shewana3_0617 NC_008577.1 722231 722866 R complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein complement(722231..722866) Shewanella sp. ANA-3 4476827 YP_868263.1 CDS Shewana3_0618 NC_008577.1 723289 724068 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO0625 hypothetical protein; Sel1 domain-containing protein 723289..724068 Shewanella sp. ANA-3 4476828 YP_868264.1 CDS Shewana3_0619 NC_008577.1 724189 724761 R TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: son:SO0627 putative 2'-5' RNA ligase; 2'-5' RNA ligase complement(724189..724761) Shewanella sp. ANA-3 4476829 YP_868265.1 CDS Shewana3_0620 NC_008577.1 724932 727118 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: son:SO0628 GGDEF domain protein; diguanylate cyclase/phosphodiesterase 724932..727118 Shewanella sp. ANA-3 4476830 YP_868266.1 CDS Shewana3_0621 NC_008577.1 727324 727881 D KEGG: son:SO0630 TonB-dependent receptor; hypothetical protein 727324..727881 Shewanella sp. ANA-3 4476831 YP_868267.1 CDS Shewana3_0622 NC_008577.1 728053 730560 D TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent, C-terminal domain protein; KEGG: son:SO0632 ATP-dependent helicase HrpB; ATP-dependent helicase HrpB 728053..730560 Shewanella sp. ANA-3 4476832 YP_868268.1 CDS Shewana3_0623 NC_008577.1 730638 732932 D KEGG: son:SO0633 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; penicillin-binding protein 1B 730638..732932 Shewanella sp. ANA-3 4476833 YP_868269.1 CDS Shewana3_0624 NC_008577.1 733010 733288 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO0635 peptidyl-prolyl cis-trans isomerase C; PpiC-type peptidyl-prolyl cis-trans isomerase 733010..733288 Shewanella sp. ANA-3 4476834 YP_868270.1 CDS Shewana3_0625 NC_008577.1 733459 733896 D hypothetical protein 733459..733896 Shewanella sp. ANA-3 4476835 YP_868271.1 CDS Shewana3_0626 NC_008577.1 735102 736592 D KEGG: pst:PSPTO4272 hypothetical protein; hypothetical protein 735102..736592 Shewanella sp. ANA-3 4476836 YP_868272.1 CDS Shewana3_0627 NC_008577.1 736683 737444 D KEGG: pfo:Pfl_3191 hypothetical protein; hypothetical protein 736683..737444 Shewanella sp. ANA-3 4476837 YP_868273.1 CDS Shewana3_0628 NC_008577.1 737995 738405 D KEGG: vpa:VPA0336 hypothetical protein; hypothetical protein 737995..738405 Shewanella sp. ANA-3 4476838 YP_868274.1 CDS Shewana3_0629 NC_008577.1 738524 738754 D KEGG: son:SO4012 hypothetical protein; hypothetical protein 738524..738754 Shewanella sp. ANA-3 4476839 YP_868275.1 CDS Shewana3_0631 NC_008577.1 741265 741966 D KEGG: son:SO4011 hypothetical protein; hypothetical protein 741265..741966 Shewanella sp. ANA-3 4476841 YP_868276.1 CDS Shewana3_0632 NC_008577.1 742284 743582 R KEGG: vch:VCA0864 methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor complement(742284..743582) Shewanella sp. ANA-3 4476842 YP_868277.1 CDS Shewana3_0633 NC_008577.1 743874 746981 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: ppr:PBPRB0003 putative tetrathionate reductase, subunit A; molydopterin dinucleotide-binding region complement(743874..746981) Shewanella sp. ANA-3 4476843 YP_868278.1 CDS Shewana3_0634 NC_008577.1 747044 748138 R PFAM: Polysulphide reductase, NrfD; KEGG: eba:ebA3056 subunit C of a molybdoprotein, similar to that of tetrathionate reductase or polysulphide reductase; polysulfide reductase, NrfD complement(747044..748138) Shewanella sp. ANA-3 4476844 YP_868279.1 CDS Shewana3_0635 NC_008577.1 748128 748883 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: bpa:BPP1030 tetrathionate reductase subunit B; 4Fe-4S ferredoxin complement(748128..748883) Shewanella sp. ANA-3 4476845 YP_868280.1 CDS Shewana3_0636 NC_008577.1 749138 751126 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ppr:PBPRB0007 hypothetical histidine kinase; ATPase domain-containing protein 749138..751126 Shewanella sp. ANA-3 4476846 YP_868281.1 CDS Shewana3_0637 NC_008577.1 751123 751734 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: vfi:VFA0103 two component response regulator; two component LuxR family transcriptional regulator 751123..751734 Shewanella sp. ANA-3 4476847 YP_868282.1 CDS Shewana3_0638 NC_008577.1 751959 755630 D KEGG: son:SO4008 hypothetical protein; hypothetical protein 751959..755630 Shewanella sp. ANA-3 4476848 YP_868283.1 CDS Shewana3_0639 NC_008577.1 755630 756295 D KEGG: son:SO4007 hypothetical protein; hypothetical protein 755630..756295 Shewanella sp. ANA-3 4476849 YP_868284.1 CDS Shewana3_0640 NC_008577.1 756338 757558 D KEGG: son:SO4006 hypothetical protein; hypothetical protein 756338..757558 Shewanella sp. ANA-3 4476850 YP_868285.1 CDS Shewana3_0641 NC_008577.1 757546 758418 D KEGG: son:SO4005 hypothetical protein; hypothetical protein 757546..758418 Shewanella sp. ANA-3 4476851 YP_868286.1 CDS Shewana3_0642 NC_008577.1 758809 760059 D PFAM: sodium:dicarboxylate symporter; KEGG: son:SO4004 proton/glutamate symporter, putative; sodium:dicarboxylate symporter 758809..760059 Shewanella sp. ANA-3 4476852 YP_868287.1 CDS Shewana3_0643 NC_008577.1 760122 760592 R hypothetical protein complement(760122..760592) Shewanella sp. ANA-3 4476853 YP_868288.1 CDS Shewana3_0644 NC_008577.1 761000 761488 R PFAM: Uncharacterized protein UPF0114; KEGG: son:SO3997 hypothetical protein; hypothetical protein complement(761000..761488) Shewanella sp. ANA-3 4476854 YP_868289.1 CDS Shewana3_0645 NC_008577.1 762022 763014 R PFAM: protein of unknown function DUF262; KEGG: plu:plu2623 hypothetical protein; hypothetical protein complement(762022..763014) Shewanella sp. ANA-3 4476855 YP_868290.1 CDS Shewana3_0646 NC_008577.1 763011 763574 R hypothetical protein complement(763011..763574) Shewanella sp. ANA-3 4476856 YP_868291.1 CDS Shewana3_0647 NC_008577.1 763691 764680 R PFAM: NERD domain protein; KEGG: pha:PSHAb0100 putative orphan protein; NERD domain-containing protein complement(763691..764680) Shewanella sp. ANA-3 4476857 YP_868292.1 CDS Shewana3_0648 NC_008577.1 765288 766280 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(765288..766280) Shewanella sp. ANA-3 4476858 YP_868293.1 CDS Shewana3_0649 NC_008577.1 766577 768868 D PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: son:SO3990 dipeptidyl peptidase IV; dipeptidyl-peptidase IV 766577..768868 Shewanella sp. ANA-3 4476859 YP_868294.1 CDS Shewana3_0650 NC_008577.1 769221 769937 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO3988 aerobic respiration control protein ArcA; two-component response regulator complement(769221..769937) Shewanella sp. ANA-3 4476860 YP_868295.1 CDS Shewana3_0651 NC_008577.1 770524 770958 D KEGG: son:SO3987 hypothetical protein; hypothetical protein 770524..770958 Shewanella sp. ANA-3 4476861 YP_868296.1 CDS Shewana3_0652 NC_008577.1 771517 772872 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 771517..772872 Shewanella sp. ANA-3 4476862 YP_868297.1 CDS Shewana3_0653 NC_008577.1 772874 773989 D PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: son:SO3985 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase 772874..773989 Shewanella sp. ANA-3 4476863 YP_868298.1 CDS Shewana3_0654 NC_008577.1 774044 775021 R PFAM: Mg2 transporter protein, CorA family protein; KEGG: son:SO3984 magnesium transporter, putative; Mg2 transporter protein, CorA family protein complement(774044..775021) Shewanella sp. ANA-3 4476864 YP_868299.1 CDS Shewana3_0655 NC_008577.1 775190 775564 D PFAM: Uncharacterized conserved protein UCP006287; KEGG: son:SO3983 hypothetical protein; hypothetical protein 775190..775564 Shewanella sp. ANA-3 4476865 YP_868300.1 CDS Shewana3_0656 NC_008577.1 775653 776282 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: son:SO3982 DNA-binding nitrate/nitrite response regulator; two component LuxR family transcriptional regulator complement(775653..776282) Shewanella sp. ANA-3 4476866 YP_868301.1 CDS Shewana3_0657 NC_008577.1 776275 778071 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: son:SO3981 nitrate/nitrite sensor protein NarQ; nitrate/nitrite sensor protein NarQ complement(776275..778071) Shewanella sp. ANA-3 4476867 YP_868302.1 CDS nrfA NC_008577.1 778296 779717 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 778296..779717 Shewanella sp. ANA-3 4476868 YP_868303.1 CDS Shewana3_0659 NC_008577.1 779893 781833 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: vvy:VVA0651 GGDEF family protein; GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(779893..781833) Shewanella sp. ANA-3 4476869 YP_868304.1 CDS Shewana3_0660 NC_008577.1 782039 782809 D KEGG: son:SO3975 hypothetical protein; hypothetical protein 782039..782809 Shewanella sp. ANA-3 4476870 YP_868305.1 CDS Shewana3_0661 NC_008577.1 782844 783428 R KEGG: son:SO3974 hypothetical protein; hypothetical protein complement(782844..783428) Shewanella sp. ANA-3 4476871 YP_868306.1 CDS Shewana3_0662 NC_008577.1 783588 783935 D hypothetical protein 783588..783935 Shewanella sp. ANA-3 4476872 YP_868307.1 CDS Shewana3_0663 NC_008577.1 784206 785063 D PFAM: protein of unknown function RIO1; KEGG: son:SO3973 RIO1/ZK632.3/MJ0444 family, putative; hypothetical protein 784206..785063 Shewanella sp. ANA-3 4476873 YP_868308.1 CDS Shewana3_0664 NC_008577.1 785789 786022 R PFAM: transposase IS3/IS911 family protein; KEGG: son:SO3972 hypothetical transposase; transposase IS3/IS911 family protein complement(785789..786022) Shewanella sp. ANA-3 4476874 YP_868309.1 CDS Shewana3_0665 NC_008577.1 786678 787370 D PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: son:SO3969 OmpA family protein; OmpA/MotB domain-containing protein 786678..787370 Shewanella sp. ANA-3 4476875 YP_868310.1 CDS Shewana3_0666 NC_008577.1 787610 788437 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: son:SO3967 hypothetical protein; molybdate ABC transporter substrate-binding protein 787610..788437 Shewanella sp. ANA-3 4476876 YP_868311.1 CDS Shewana3_0667 NC_008577.1 788512 789876 R TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO3966 magnesium transporter; magnesium transporter complement(788512..789876) Shewanella sp. ANA-3 4476877 YP_868312.1 CDS Shewana3_0668 NC_008577.1 790089 790364 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: son:SO3965 phosphocarrier protein NPR; HPr family phosphocarrier protein complement(790089..790364) Shewanella sp. ANA-3 4476878 YP_868313.1 CDS Shewana3_0669 NC_008577.1 790351 791205 R PFAM: Uncharacterized P-loop ATPase protein UPF0042; KEGG: son:SO3964 hypothetical protein; hypothetical protein complement(790351..791205) Shewanella sp. ANA-3 4476879 YP_868314.1 CDS Shewana3_0670 NC_008577.1 791202 791645 R TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: son:SO3963 nitrogen regulatory IIA protein; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN complement(791202..791645) Shewanella sp. ANA-3 4476880 YP_868315.1 CDS Shewana3_0671 NC_008577.1 791648 791935 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3962 ribosomal subunit interface protein; sigma 54 modulation protein/30S ribosomal protein S30 complement(791648..791935) Shewanella sp. ANA-3 4476881 YP_868316.1 CDS Shewana3_0672 NC_008577.1 791964 793439 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(791964..793439) Shewanella sp. ANA-3 4476882 YP_868317.1 CDS Shewana3_0673 NC_008577.1 793545 794276 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3960 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(793545..794276) Shewanella sp. ANA-3 4476883 YP_868318.1 CDS Shewana3_0674 NC_008577.1 794273 794824 R PFAM: OstA family protein; KEGG: son:SO3959 hypothetical protein; OstA family protein complement(794273..794824) Shewanella sp. ANA-3 4476884 YP_868319.1 CDS Shewana3_0675 NC_008577.1 794811 795371 R PFAM: protein of unknown function DUF1239; KEGG: son:SO3958 hypothetical protein; hypothetical protein complement(794811..795371) Shewanella sp. ANA-3 4476885 YP_868320.1 CDS Shewana3_0676 NC_008577.1 795368 795919 R forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(795368..795919) Shewanella sp. ANA-3 4476886 YP_868321.1 CDS Shewana3_0677 NC_008577.1 795919 796896 R TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KEGG: son:SO3956 carbohydrate isomerase, KpsF/GutQ family; KpsF/GutQ family protein complement(795919..796896) Shewanella sp. ANA-3 4476887 YP_868322.1 CDS Shewana3_0678 NC_008577.1 797459 798277 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3954 ABC transporter, ATP-binding protein, putative; ABC transporter-like protein 797459..798277 Shewanella sp. ANA-3 4476888 YP_868323.1 CDS Shewana3_0679 NC_008577.1 798274 799059 D PFAM: protein of unknown function DUF140; KEGG: son:SO3953 putative membrane protein; hypothetical protein 798274..799059 Shewanella sp. ANA-3 4476889 YP_868324.1 CDS Shewana3_0680 NC_008577.1 799114 799587 D PFAM: Mammalian cell entry related domain protein; KEGG: son:SO3952 mce-related protein; hypothetical protein 799114..799587 Shewanella sp. ANA-3 4476890 YP_868325.1 CDS Shewana3_0681 NC_008577.1 799599 800252 D PFAM: toluene tolerance family protein; KEGG: son:SO3951 hypothetical protein; toluene tolerance family protein 799599..800252 Shewanella sp. ANA-3 4476891 YP_868326.1 CDS Shewana3_0682 NC_008577.1 800258 800542 D KEGG: son:SO3950 SpoIIAA family protein; SpoIIAA family protein 800258..800542 Shewanella sp. ANA-3 4476892 YP_868327.1 CDS Shewana3_0683 NC_008577.1 800559 800810 D PFAM: BolA family protein; KEGG: son:SO3949 BolA/YrbA family protein; BolA family protein 800559..800810 Shewanella sp. ANA-3 4476893 YP_868328.1 CDS Shewana3_0684 NC_008577.1 800823 802082 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 800823..802082 Shewanella sp. ANA-3 4476894 YP_868329.1 CDS Shewana3_0685 NC_008577.1 802182 802760 R PFAM: regulatory protein, TetR; KEGG: rso:RS01911 putative transcription regulator protein; TetR family transcriptional regulator complement(802182..802760) Shewanella sp. ANA-3 4476895 YP_868330.1 CDS Shewana3_0686 NC_008577.1 802841 803701 D KEGG: rso:RS01912 hypothetical protein; hypothetical protein 802841..803701 Shewanella sp. ANA-3 4476896 YP_868331.1 CDS Shewana3_0687 NC_008577.1 803698 804102 D hypothetical protein 803698..804102 Shewanella sp. ANA-3 4476897 YP_868332.1 CDS Shewana3_0688 NC_008577.1 804136 804576 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: bur:Bcep18194_A4725 phenylacetic acid degradation-related protein; hypothetical protein 804136..804576 Shewanella sp. ANA-3 4476898 YP_868333.1 CDS Shewana3_0689 NC_008577.1 804742 805824 R TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: son:SO3943 protease DegS; DegS serine peptidase complement(804742..805824) Shewanella sp. ANA-3 4476899 YP_868334.1 CDS Shewana3_0690 NC_008577.1 805950 807302 R TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: son:SO3942 serine protease, HtrA/DegQ/DegS family; peptidase Do complement(805950..807302) Shewanella sp. ANA-3 4476900 YP_868335.1 CDS Shewana3_0691 NC_008577.1 807705 808871 D PFAM: AFG1-family ATPase; KEGG: son:SO3941 hypothetical protein; AFG1 family ATPase 807705..808871 Shewanella sp. ANA-3 4476901 YP_868336.1 CDS rplM NC_008577.1 809168 809596 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 809168..809596 Shewanella sp. ANA-3 4476902 YP_868337.1 CDS rpsI NC_008577.1 809611 810003 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 809611..810003 Shewanella sp. ANA-3 4476903 YP_868338.1 CDS Shewana3_0694 NC_008577.1 810117 810305 D KEGG: son:SO3938 hypothetical protein; hypothetical protein 810117..810305 Shewanella sp. ANA-3 4476904 YP_868339.1 CDS Shewana3_0695 NC_008577.1 810372 811667 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 810372..811667 Shewanella sp. ANA-3 4476905 YP_868340.1 CDS Shewana3_0696 NC_008577.1 811776 812432 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO3936 sodium-type flagellar protein MotX; Sel1 domain-containing protein 811776..812432 Shewanella sp. ANA-3 4476906 YP_868341.1 CDS Shewana3_0697 NC_008577.1 812472 814901 D KEGG: son:SO3935 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain protein; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; RNAse R 812472..814901 Shewanella sp. ANA-3 4476907 YP_868342.1 CDS Shewana3_0698 NC_008577.1 814902 815642 D Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 814902..815642 Shewanella sp. ANA-3 4476908 YP_868343.1 CDS Shewana3_0699 NC_008577.1 815712 817136 R PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3933 hypothetical protein; major facilitator superfamily transporter complement(815712..817136) Shewanella sp. ANA-3 4476909 YP_868344.1 CDS Shewana3_0700 NC_008577.1 817318 818073 R PFAM: protein of unknown function DUF481; KEGG: son:SO3931 putative salt-induced outer membrane protein; hypothetical protein complement(817318..818073) Shewanella sp. ANA-3 4476910 YP_868345.1 CDS rpsF NC_008577.1 818286 818681 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 818286..818681 Shewanella sp. ANA-3 4476911 YP_868346.1 CDS Shewana3_0702 NC_008577.1 818705 818995 D binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 818705..818995 Shewanella sp. ANA-3 4476912 YP_868347.1 CDS rpsR NC_008577.1 819007 819234 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 819007..819234 Shewanella sp. ANA-3 4476913 YP_868348.1 CDS rplI NC_008577.1 819271 819723 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 819271..819723 Shewanella sp. ANA-3 4476914 YP_868349.1 CDS Shewana3_0705 NC_008577.1 819881 821119 R TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: son:SO3926 GTP-binding protein; small GTP-binding protein complement(819881..821119) Shewanella sp. ANA-3 4476915 YP_868350.1 CDS Shewana3_0706 NC_008577.1 821103 822182 R catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase complement(821103..822182) Shewanella sp. ANA-3 4476916 YP_868351.1 CDS Shewana3_0707 NC_008577.1 822182 822820 R KEGG: son:SO3924 hypothetical protein; hypothetical protein complement(822182..822820) Shewanella sp. ANA-3 4476917 YP_868352.1 CDS thiH NC_008577.1 822821 824260 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH complement(822821..824260) Shewanella sp. ANA-3 4476918 YP_868353.1 CDS Shewana3_0709 NC_008577.1 824331 825014 R KEGG: son:SO3922 formate dehydrogenase, putative; formate dehydrogenase subunit gamma complement(824331..825014) Shewanella sp. ANA-3 4476919 YP_868354.1 CDS Shewana3_0710 NC_008577.1 825028 825348 R PFAM: iron hydrogenase, small subunit; KEGG: son:SO3921 periplasmic Fe hydrogenase, small subunit; iron hydrogenase, small subunit complement(825028..825348) Shewanella sp. ANA-3 4476920 YP_868355.1 CDS Shewana3_0711 NC_008577.1 825361 826593 R TIGRFAM: hydrogenases, Fe-only; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; hydrogenase large subunit domain protein; KEGG: son:SO3920 periplasmic Fe hydrogenase, large subunit; response regulator receiver protein complement(825361..826593) Shewanella sp. ANA-3 4476921 YP_868356.1 CDS Shewana3_0712 NC_008577.1 827230 829428 R KEGG: son:SO3918 hypothetical protein; dipeptidyl-peptidase 7 complement(827230..829428) Shewanella sp. ANA-3 4476922 YP_868357.1 CDS Shewana3_0713 NC_008577.1 829554 830960 D KEGG: son:SO3917 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase; primary replicative DNA helicase 829554..830960 Shewanella sp. ANA-3 4476923 YP_868358.1 CDS alr NC_008577.1 831036 832112 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 831036..832112 Shewanella sp. ANA-3 4476924 YP_868359.1 CDS Shewana3_0715 NC_008577.1 832282 832746 R KEGG: son:SO3915 putative chemotaxis protein CheX; putative chemotaxis protein CheX complement(832282..832746) Shewanella sp. ANA-3 4476925 YP_868360.1 CDS Shewana3_0716 NC_008577.1 833315 835510 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO3914 TonB-dependent receptor, putative; TonB-dependent siderophore receptor 833315..835510 Shewanella sp. ANA-3 4476926 YP_868361.1 CDS Shewana3_0717 NC_008577.1 835586 836260 D PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO3913 putative hydroxylase; putative hydroxylase 835586..836260 Shewanella sp. ANA-3 4476927 YP_868362.1 CDS Shewana3_0718 NC_008577.1 836488 837492 D TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: son:SO3912 TIM-barrel protein, yjbN family; tRNA-dihydrouridine synthase A 836488..837492 Shewanella sp. ANA-3 4476928 YP_868363.1 CDS Shewana3_0719 NC_008577.1 837704 837997 D KEGG: son:SO3910 hypothetical protein; hypothetical protein 837704..837997 Shewanella sp. ANA-3 4476929 YP_868364.1 CDS Shewana3_0720 NC_008577.1 838143 838343 D KEGG: son:SO3909 hypothetical protein; phage shock protein C, PspC 838143..838343 Shewanella sp. ANA-3 4476930 YP_868365.1 CDS Shewana3_0721 NC_008577.1 838482 839219 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO3908 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase complement(838482..839219) Shewanella sp. ANA-3 4476931 YP_868366.1 CDS Shewana3_0722 NC_008577.1 839254 839736 D PFAM: protein of unknown function DUF461; KEGG: son:SO3907 hypothetical protein; hypothetical protein 839254..839736 Shewanella sp. ANA-3 4476932 YP_868367.1 CDS Shewana3_0723 NC_008577.1 839748 840716 D KEGG: son:SO3906 hypothetical protein; hypothetical protein 839748..840716 Shewanella sp. ANA-3 4476933 YP_868368.1 CDS Shewana3_0724 NC_008577.1 840761 841456 D KEGG: son:SO3905 hypothetical protein; hypothetical protein 840761..841456 Shewanella sp. ANA-3 4476934 YP_868369.1 CDS tolC NC_008577.1 841529 842836 R trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein complement(841529..842836) Shewanella sp. ANA-3 4476935 YP_868370.1 CDS Shewana3_0726 NC_008577.1 843080 843691 D TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase; KEGG: son:SO3903 ADP-ribose pyrophosphatase; nucleoside diphosphate pyrophosphatase 843080..843691 Shewanella sp. ANA-3 4476936 YP_868371.1 CDS Shewana3_0727 NC_008577.1 843684 844136 D PFAM: protein of unknown function DUF1249; KEGG: son:SO3902 hypothetical protein; hypothetical protein 843684..844136 Shewanella sp. ANA-3 4476937 YP_868372.1 CDS Shewana3_0728 NC_008577.1 844152 844991 D PFAM: metallophosphoesterase; Calcineurin phosphoesterase C-terminal domain protein; KEGG: son:SO3901 lacZ expression regulator; calcineurin phosphoesterase C-terminal domain-containing protein 844152..844991 Shewanella sp. ANA-3 4476938 YP_868373.1 CDS Shewana3_0729 NC_008577.1 845018 845593 D PFAM: protein of unknown function UPF0227; KEGG: son:SO3900 hypothetical protein; hypothetical protein 845018..845593 Shewanella sp. ANA-3 4476939 YP_868374.1 CDS Shewana3_0730 NC_008577.1 845650 847536 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 845650..847536 Shewanella sp. ANA-3 4476940 YP_868375.1 CDS Shewana3_0731 NC_008577.1 847589 848764 D KEGG: son:SO3898 L-sorbosone dehydrogenase, putative; L-sorbosone dehydrogenase 847589..848764 Shewanella sp. ANA-3 4476941 YP_868376.1 CDS Shewana3_0732 NC_008577.1 848757 851033 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 848757..851033 Shewanella sp. ANA-3 4476942 YP_868377.1 CDS Shewana3_0733 NC_008577.1 851205 852284 R PFAM: porin, Gram-negative type; KEGG: son:SO3896 outer membrane porin, putative; porin complement(851205..852284) Shewanella sp. ANA-3 4476943 YP_868378.1 CDS Shewana3_0734 NC_008577.1 852715 853779 R PFAM: porin, Gram-negative type; KEGG: son:SO3896 outer membrane porin, putative; porin complement(852715..853779) Shewanella sp. ANA-3 4476944 YP_868379.1 CDS Shewana3_0735 NC_008577.1 854196 855029 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: son:SO3895 HesA/MoeB/ThiF family protein; UBA/THIF-type NAD/FAD binding protein 854196..855029 Shewanella sp. ANA-3 4476945 YP_868380.1 CDS Shewana3_0736 NC_008577.1 855172 856803 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3894 sensor histidine kinase; ATPase domain-containing protein complement(855172..856803) Shewanella sp. ANA-3 4476946 YP_868381.1 CDS Shewana3_0737 NC_008577.1 856972 857583 D KEGG: son:SO3892 hypothetical protein; hypothetical protein 856972..857583 Shewanella sp. ANA-3 4476947 YP_868382.1 CDS Shewana3_0738 NC_008577.1 857704 857835 R hypothetical protein complement(857704..857835) Shewanella sp. ANA-3 4476948 YP_868383.1 CDS Shewana3_0739 NC_008577.1 858135 859724 D TIGRFAM: hemerythrin-like metal-binding protein; PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; KEGG: son:SO3890 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 858135..859724 Shewanella sp. ANA-3 4476949 YP_868384.1 CDS Shewana3_0740 NC_008577.1 860105 860437 R PFAM: protein of unknown function DUF1508; KEGG: son:SO3888 hypothetical protein; hypothetical protein complement(860105..860437) Shewanella sp. ANA-3 4476951 YP_868385.1 CDS modC NC_008577.1 860679 861764 R Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein complement(860679..861764) Shewanella sp. ANA-3 4476952 YP_868386.1 CDS modB NC_008577.1 861758 862495 R part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease complement(861758..862495) Shewanella sp. ANA-3 4476953 YP_868387.1 CDS Shewana3_0743 NC_008577.1 862495 863280 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO3863 molybdenum ABC transporter, periplasmic molybdenum-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein complement(862495..863280) Shewanella sp. ANA-3 4476954 YP_868388.1 CDS Shewana3_0744 NC_008577.1 863483 864262 D TIGRFAM: molybdate transport repressor, ModE; Molybdenum-pterin binding; PFAM: regulatory protein, LysR; TOBE domain protein; KEGG: son:SO3862 molybdenum transport regulatory protein ModE; ModE family transcriptional regulator 863483..864262 Shewanella sp. ANA-3 4476955 YP_868389.1 CDS Shewana3_0745 NC_008577.1 864279 865460 R TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: son:SO3861 iron-sulfur cluster-binding protein; putative iron-sulfur cluster binding protein complement(864279..865460) Shewanella sp. ANA-3 4476956 YP_868390.1 CDS Shewana3_0746 NC_008577.1 865618 866445 D SMART: extracellular solute-binding protein, family 3; KEGG: son:SO3860 hypothetical protein; extracellular solute-binding protein 865618..866445 Shewanella sp. ANA-3 4476957 YP_868391.1 CDS Shewana3_0747 NC_008577.1 866449 868389 R KEGG: son:SO3859 cyclic nucleotide phosphodiesterase, putative; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase complement(866449..868389) Shewanella sp. ANA-3 4476958 YP_868392.1 CDS Shewana3_0748 NC_008577.1 868504 869031 D PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO3857 PAP2 family protein; PA-phosphatase-like phosphoesterase 868504..869031 Shewanella sp. ANA-3 4476959 YP_868393.1 CDS Shewana3_0749 NC_008577.1 869056 869490 D KEGG: son:SO3856 hypothetical protein; hypothetical protein 869056..869490 Shewanella sp. ANA-3 4476960 YP_868394.1 CDS Shewana3_0750 NC_008577.1 869557 871245 R malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase complement(869557..871245) Shewanella sp. ANA-3 4476961 YP_868395.1 CDS Shewana3_0751 NC_008577.1 871512 871982 R PFAM: protein of unknown function DUF1456; KEGG: son:SO3852 hypothetical protein; hypothetical protein complement(871512..871982) Shewanella sp. ANA-3 4476962 YP_868396.1 CDS Shewana3_0752 NC_008577.1 872127 873413 R KEGG: vpa:VP2681 putative manganese transporter; putative manganese transporter complement(872127..873413) Shewanella sp. ANA-3 4476963 YP_868397.1 CDS Shewana3_0753 NC_008577.1 873497 874039 R PFAM: membrane-flanked domain; KEGG: son:SO3849 hypothetical protein; membrane-flanked domain-containing protein complement(873497..874039) Shewanella sp. ANA-3 4476964 YP_868398.1 CDS Shewana3_0754 NC_008577.1 874239 876824 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa0840 TonB-dependent receptor; TonB-dependent receptor 874239..876824 Shewanella sp. ANA-3 4476965 YP_868399.1 CDS Shewana3_0755 NC_008577.1 876942 877571 D PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: sme:SMb20420 putative glutathione S-transferase protein; glutathione S-transferase domain-containing protein 876942..877571 Shewanella sp. ANA-3 4476966 YP_868400.1 CDS Shewana3_0756 NC_008577.1 877644 878144 R KEGG: son:SO3848 hypothetical protein; hypothetical protein complement(877644..878144) Shewanella sp. ANA-3 4476967 YP_868401.1 CDS Shewana3_0757 NC_008577.1 878186 878593 R KEGG: son:SO3847 hypothetical protein; hypothetical protein complement(878186..878593) Shewanella sp. ANA-3 4476968 YP_868402.1 CDS Shewana3_0758 NC_008577.1 878828 879613 R KEGG: son:SO3846 hypothetical protein; hypothetical protein complement(878828..879613) Shewanella sp. ANA-3 4476969 YP_868403.1 CDS Shewana3_0759 NC_008577.1 879811 881895 R PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: son:SO3844 peptidase, M13 family; peptidase M13 complement(879811..881895) Shewanella sp. ANA-3 4476970 YP_868404.1 CDS Shewana3_0760 NC_008577.1 882233 882940 D TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: ssn:SSO_2239 16S pseudouridylate 516 synthase; ribosomal small subunit pseudouridine synthase A 882233..882940 Shewanella sp. ANA-3 4476971 YP_868405.1 CDS Shewana3_0761 NC_008577.1 883024 883980 R KEGG: son:SO3842 hypothetical protein; hypothetical protein complement(883024..883980) Shewanella sp. ANA-3 4476972 YP_868406.1 CDS Shewana3_0762 NC_008577.1 883977 884555 R KEGG: son:SO3841 hypothetical protein; hypothetical protein complement(883977..884555) Shewanella sp. ANA-3 4476973 YP_868407.1 CDS Shewana3_0763 NC_008577.1 884555 885088 R PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO3840 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(884555..885088) Shewanella sp. ANA-3 4476974 YP_868408.1 CDS Shewana3_0764 NC_008577.1 885489 887351 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3838 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 885489..887351 Shewanella sp. ANA-3 4476975 YP_868409.1 CDS Shewana3_0765 NC_008577.1 887536 888483 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(887536..888483) Shewanella sp. ANA-3 4476976 YP_868410.1 CDS ipk NC_008577.1 888596 889450 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(888596..889450) Shewanella sp. ANA-3 4476977 YP_868411.1 CDS Shewana3_0767 NC_008577.1 889452 890096 R PFAM: outer membrane lipoprotein LolB; KEGG: son:SO3835 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB complement(889452..890096) Shewanella sp. ANA-3 4476978 YP_868412.1 CDS hemA NC_008577.1 890351 891601 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 890351..891601 Shewanella sp. ANA-3 4476979 YP_868413.1 CDS prfA NC_008577.1 891616 892707 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 891616..892707 Shewanella sp. ANA-3 4476980 YP_868414.1 CDS Shewana3_0770 NC_008577.1 892710 893570 D TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: son:SO3832 hemK family protein; HemK family modification methylase 892710..893570 Shewanella sp. ANA-3 4476981 YP_868415.1 CDS Shewana3_0771 NC_008577.1 893716 894129 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO3831 acetyltransferase, GNAT family; pantoate--beta-alanine ligase complement(893716..894129) Shewanella sp. ANA-3 4476982 YP_868416.1 CDS Shewana3_0772 NC_008577.1 894248 894643 D PFAM: Invasion gene expression up-regulator, SirB; KEGG: son:SO3830 hypothetical protein; invasion gene expression up-regulator, SirB 894248..894643 Shewanella sp. ANA-3 4476983 YP_868417.1 CDS Shewana3_0773 NC_008577.1 894643 895431 D KEGG: son:SO3829 hypothetical protein; hypothetical protein 894643..895431 Shewanella sp. ANA-3 4476984 YP_868418.1 CDS Shewana3_0774 NC_008577.1 895576 896823 D PFAM: protein of unknown function DUF819; KEGG: son:SO3828 hypothetical protein; hypothetical protein 895576..896823 Shewanella sp. ANA-3 4476985 YP_868419.1 CDS Shewana3_0775 NC_008577.1 896881 897729 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 896881..897729 Shewanella sp. ANA-3 4476986 YP_868420.1 CDS Shewana3_0776 NC_008577.1 897893 898765 D KEGG: son:SO3822 hypothetical protein; hypothetical protein 897893..898765 Shewanella sp. ANA-3 4476987 YP_868421.1 CDS Shewana3_0777 NC_008577.1 898940 900499 D PFAM: EAL domain protein; KEGG: son:SO3821 rtn protein; EAL domain-containing protein 898940..900499 Shewanella sp. ANA-3 4476988 YP_868422.1 CDS Shewana3_0778 NC_008577.1 900554 901954 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: cps:CPS_3995 ammonium transporter; ammonium transporter complement(900554..901954) Shewanella sp. ANA-3 4476989 YP_868423.1 CDS Shewana3_0779 NC_008577.1 901951 902289 R PFAM: nitrogen regulatory protein P-II; KEGG: son:SO3819 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(901951..902289) Shewanella sp. ANA-3 4476990 YP_868424.1 CDS Shewana3_0780 NC_008577.1 902585 903568 R TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; KEGG: son:SO3817 2-dehydropantoate 2-reductase; 2-dehydropantoate 2-reductase complement(902585..903568) Shewanella sp. ANA-3 4476991 YP_868425.1 CDS Shewana3_0781 NC_008577.1 903568 903930 R PFAM: VanZ family protein; KEGG: son:SO3816 hypothetical protein; VanZ family protein complement(903568..903930) Shewanella sp. ANA-3 4476992 YP_868426.1 CDS Shewana3_0782 NC_008577.1 904093 904578 D putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 904093..904578 Shewanella sp. ANA-3 4476993 YP_868427.1 CDS Shewana3_0783 NC_008577.1 904676 906067 R PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3814 AmpG protein, putative; major facilitator superfamily transporter complement(904676..906067) Shewanella sp. ANA-3 4476994 YP_868428.1 CDS Shewana3_0784 NC_008577.1 906219 906539 R KEGG: son:SO3813 hypothetical protein; hypothetical protein complement(906219..906539) Shewanella sp. ANA-3 4476995 YP_868429.1 CDS Shewana3_0785 NC_008577.1 906609 907196 R PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO3812 peptidyl-prolyl cis-trans isomerase A; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(906609..907196) Shewanella sp. ANA-3 4476996 YP_868430.1 CDS Shewana3_0786 NC_008577.1 907230 907808 R PFAM: Uncharacterized lipoprotein; KEGG: son:SO3811 lipoprotein, putative; hypothetical protein complement(907230..907808) Shewanella sp. ANA-3 4476997 YP_868431.1 CDS Shewana3_0787 NC_008577.1 907993 908496 D KEGG: son:SO3810 OmpA-like transmembrane domain protein; OmpA-like transmembrane domain-containing protein 907993..908496 Shewanella sp. ANA-3 4476998 YP_868432.1 CDS Shewana3_0788 NC_008577.1 908765 909796 D KEGG: son:SO3808 hypothetical protein; hypothetical protein 908765..909796 Shewanella sp. ANA-3 4476999 YP_868433.1 CDS Shewana3_0789 NC_008577.1 909849 910712 D KEGG: son:SO3807 sterol desaturase family protein; sterol desaturase family protein 909849..910712 Shewanella sp. ANA-3 4477000 YP_868434.1 CDS Shewana3_0790 NC_008577.1 910911 911546 D KEGG: cps:CPS_1725 hypothetical protein; hypothetical protein 910911..911546 Shewanella sp. ANA-3 4477001 YP_868435.1 CDS Shewana3_0791 NC_008577.1 911715 913112 D TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO3805 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 911715..913112 Shewanella sp. ANA-3 4477002 YP_868436.1 CDS Shewana3_0792 NC_008577.1 913115 913774 D TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: son:SO3804 phenylacrylic acid decarboxylase, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative; aromatic acid decarboxylase 913115..913774 Shewanella sp. ANA-3 4477003 YP_868437.1 CDS Shewana3_0793 NC_008577.1 913782 914312 D TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: son:SO3803 hypoxanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 913782..914312 Shewanella sp. ANA-3 4477004 YP_868438.1 CDS Shewana3_0794 NC_008577.1 914563 915501 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3802 ABC transporter, ATP-binding protein; ABC transporter-like protein 914563..915501 Shewanella sp. ANA-3 4477005 YP_868439.1 CDS Shewana3_0795 NC_008577.1 915498 916268 D PFAM: ABC-2 type transporter; KEGG: son:SO3801 ABC transporter, permease protein; ABC transporter 915498..916268 Shewanella sp. ANA-3 4477006 YP_868440.1 CDS Shewana3_0796 NC_008577.1 916412 916915 D hypothetical protein 916412..916915 Shewanella sp. ANA-3 4477007 YP_868441.1 CDS Shewana3_0797 NC_008577.1 916978 921159 R PFAM: protease-associated PA domain protein; KEGG: ade:Adeh_2937 protease-associated PA; protease domain-containing protein complement(916978..921159) Shewanella sp. ANA-3 4477008 YP_868442.1 CDS Shewana3_0798 NC_008577.1 921368 921862 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(921368..921862) Shewanella sp. ANA-3 4477009 YP_868443.1 CDS Shewana3_0799 NC_008577.1 921925 922602 R PFAM: pseudouridine synthase; KEGG: hch:HCH_04661 pseudouridylate synthases, 23S RNA-specific; ribosomal large subunit pseudouridine synthase A complement(921925..922602) Shewanella sp. ANA-3 4477010 YP_868444.1 CDS Shewana3_0800 NC_008577.1 922790 924706 D PFAM: peptidase U32; KEGG: son:SO3797 peptidase, U32 family; peptidase U32 922790..924706 Shewanella sp. ANA-3 4477011 YP_868445.1 CDS Shewana3_0801 NC_008577.1 924849 925223 D PFAM: protein of unknown function DUF1696; KEGG: son:SO3796 hypothetical protein; hypothetical protein 924849..925223 Shewanella sp. ANA-3 4477012 YP_868446.1 CDS Shewana3_0802 NC_008577.1 925249 926001 D PFAM: Abortive infection protein; KEGG: son:SO3795 hypothetical protein; abortive infection protein 925249..926001 Shewanella sp. ANA-3 4477013 YP_868447.1 CDS Shewana3_0803 NC_008577.1 926008 928281 R PFAM: MORN variant repeat protein; KEGG: son:SO3794 hypothetical protein; MORN repeat-containing protein complement(926008..928281) Shewanella sp. ANA-3 4477014 YP_868448.1 CDS Shewana3_0804 NC_008577.1 928427 928750 D PFAM: Cupin 2, conserved barrel domain protein; KEGG: son:SO3793 hypothetical protein; cupin 928427..928750 Shewanella sp. ANA-3 4477015 YP_868449.1 CDS Shewana3_0805 NC_008577.1 928775 929947 R KEGG: son:SO3792 hypothetical protein; hypothetical protein complement(928775..929947) Shewanella sp. ANA-3 4477016 YP_868450.1 CDS Shewana3_0806 NC_008577.1 930005 931168 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: peptidase M19, renal dipeptidase; KEGG: son:SO3791 renal dipeptidase family protein; peptidase M19 complement(930005..931168) Shewanella sp. ANA-3 4477017 YP_868451.1 CDS Shewana3_0807 NC_008577.1 931279 931722 R PFAM: Fe-S metabolism associated SufE; KEGG: son:SO3790 hypothetical protein; Fe-S metabolism associated SufE complement(931279..931722) Shewanella sp. ANA-3 4477018 YP_868452.1 CDS Shewana3_0808 NC_008577.1 931790 933037 R TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO3789 aminotransferase, class V; cysteine desulfurase complement(931790..933037) Shewanella sp. ANA-3 4477019 YP_868453.1 CDS Shewana3_0809 NC_008577.1 933343 935043 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: vch:VC1405 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 933343..935043 Shewanella sp. ANA-3 4477020 YP_868454.1 CDS Shewana3_0810 NC_008577.1 935224 936960 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO3783 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase complement(935224..936960) Shewanella sp. ANA-3 4477021 YP_868455.1 CDS Shewana3_0811 NC_008577.1 937366 938412 D KEGG: son:SO3782 hypothetical protein; hypothetical protein 937366..938412 Shewanella sp. ANA-3 4477022 YP_868456.1 CDS Shewana3_0812 NC_008577.1 938660 940621 D in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 938660..940621 Shewanella sp. ANA-3 4477023 YP_868457.1 CDS Shewana3_0813 NC_008577.1 940618 942369 D in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 940618..942369 Shewanella sp. ANA-3 4477024 YP_868458.1 CDS Shewana3_0814 NC_008577.1 942422 943063 D TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: son:SO3778 adenylate cyclase CyaB, putative; putative adenylyl cyclase CyaB 942422..943063 Shewanella sp. ANA-3 4477025 YP_868459.1 CDS Shewana3_0815 NC_008577.1 943094 944707 D KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 943094..944707 Shewanella sp. ANA-3 4477026 YP_868460.1 CDS Shewana3_0816 NC_008577.1 944800 944979 R TIGRFAM: DNA binding domain, excisionase family; KEGG: son:SO3777 hypothetical protein; DNA binding domain-containing protein complement(944800..944979) Shewanella sp. ANA-3 4477027 YP_868461.1 CDS Shewana3_0817 NC_008577.1 945076 945810 R PFAM: protein of unknown function DUF599; KEGG: son:SO3776 hypothetical protein; hypothetical protein complement(945076..945810) Shewanella sp. ANA-3 4477028 YP_868462.1 CDS Shewana3_0818 NC_008577.1 946687 947175 D hypothetical protein 946687..947175 Shewanella sp. ANA-3 4477029 YP_868463.1 CDS Shewana3_0819 NC_008577.1 947610 950804 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(947610..950804) Shewanella sp. ANA-3 4477030 YP_868464.1 CDS Shewana3_0820 NC_008577.1 951063 951611 R PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: son:SO3772 SH3 domain protein; SH3 type 3 domain-containing protein complement(951063..951611) Shewanella sp. ANA-3 4477031 YP_868465.1 CDS Shewana3_0821 NC_008577.1 951807 953096 R PFAM: phosphate transporter; KEGG: son:SO3771 phosphate transporter, putative; phosphate transporter complement(951807..953096) Shewanella sp. ANA-3 4477032 YP_868466.1 CDS Shewana3_0822 NC_008577.1 953122 953802 R PFAM: protein of unknown function DUF47; KEGG: son:SO3770 conserved hypothetical protein TIGR00153; hypothetical protein complement(953122..953802) Shewanella sp. ANA-3 4477033 YP_868467.1 CDS Shewana3_0823 NC_008577.1 954034 955545 D PFAM: adenylate cyclase; KEGG: son:SO3769 hypothetical protein; adenylate cyclase 954034..955545 Shewanella sp. ANA-3 4477034 YP_868468.1 CDS Shewana3_0824 NC_008577.1 955599 956423 R PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: son:SO3768 ion transporter; Ion transport 2 domain-containing protein complement(955599..956423) Shewanella sp. ANA-3 4477035 YP_868469.1 CDS Shewana3_0825 NC_008577.1 956557 956886 R KEGG: son:SO3767 hypothetical protein; hypothetical protein complement(956557..956886) Shewanella sp. ANA-3 4477036 YP_868470.1 CDS Shewana3_0826 NC_008577.1 956994 957647 R KEGG: son:SO3766 hypothetical protein; hypothetical protein complement(956994..957647) Shewanella sp. ANA-3 4477037 YP_868471.1 CDS Shewana3_0827 NC_008577.1 957797 958486 R PFAM: PspA/IM30 family protein; KEGG: son:SO3765 hypothetical protein; phage shock protein A, PspA complement(957797..958486) Shewanella sp. ANA-3 4477038 YP_868472.1 CDS Shewana3_0828 NC_008577.1 958499 958912 R KEGG: son:SO3764 hypothetical protein; hypothetical protein complement(958499..958912) Shewanella sp. ANA-3 4477039 YP_868473.1 CDS Shewana3_0829 NC_008577.1 958991 960724 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(958991..960724) Shewanella sp. ANA-3 4477040 YP_868474.1 CDS Shewana3_0830 NC_008577.1 960729 961628 R PFAM: protein of unknown function DUF350; KEGG: son:SO3762 hypothetical protein; hypothetical protein complement(960729..961628) Shewanella sp. ANA-3 4477041 YP_868475.1 CDS Shewana3_0831 NC_008577.1 961644 962621 R KEGG: son:SO3761 hypothetical protein; hypothetical protein complement(961644..962621) Shewanella sp. ANA-3 4477042 YP_868476.1 CDS Shewana3_0832 NC_008577.1 962879 965743 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 962879..965743 Shewanella sp. ANA-3 4477043 YP_868477.1 CDS Shewana3_0833 NC_008577.1 965846 966814 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: son:SO3759 GGDEF domain protein; GAF sensor-containing diguanylate cyclase 965846..966814 Shewanella sp. ANA-3 4477044 YP_868478.1 CDS Shewana3_0834 NC_008577.1 966913 967872 R PFAM: protein of unknown function DUF897; KEGG: son:SO3758 hypothetical protein; hypothetical protein complement(966913..967872) Shewanella sp. ANA-3 4477045 YP_868479.1 CDS Shewana3_0835 NC_008577.1 968003 968986 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3757 rubisco operon transcriptional regulator; LysR family transcriptional regulator 968003..968986 Shewanella sp. ANA-3 4477046 YP_868480.1 CDS Shewana3_0836 NC_008577.1 969062 969685 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vvu:VV12509 putative threonine efflux protein; lysine exporter protein LysE/YggA 969062..969685 Shewanella sp. ANA-3 4477047 YP_868481.1 CDS Shewana3_0837 NC_008577.1 969774 970709 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: vpa:VPA1564 hypothetical protein; NAD-dependent epimerase/dehydratase complement(969774..970709) Shewanella sp. ANA-3 4477048 YP_868482.1 CDS Shewana3_0838 NC_008577.1 970946 971383 R PFAM: regulatory protein, MerR; KEGG: vpa:VPA1563 putative transcriptional regulator; MerR family transcriptional regulator complement(970946..971383) Shewanella sp. ANA-3 4477049 YP_868483.1 CDS Shewana3_0839 NC_008577.1 971433 972635 R PFAM: AFG1-family ATPase; KEGG: son:SO3756 hypothetical ATPase; AFG1 family ATPase complement(971433..972635) Shewanella sp. ANA-3 4477050 YP_868484.1 CDS Shewana3_0840 NC_008577.1 972865 973701 D PFAM: protein of unknown function DUF583; KEGG: son:SO1662 hypothetical Ccm2-related protein; hypothetical protein 972865..973701 Shewanella sp. ANA-3 4477051 YP_868485.1 CDS Shewana3_0841 NC_008577.1 973705 975243 R PFAM: peptidase M16 domain protein; KEGG: son:SO3751 hypothetical protein; peptidase M16 domain-containing protein complement(973705..975243) Shewanella sp. ANA-3 4477052 YP_868486.1 CDS Shewana3_0842 NC_008577.1 975240 976655 R PFAM: peptidase M16 domain protein; KEGG: gvi:glr3686 probable peptidase; peptidase M16 domain-containing protein complement(975240..976655) Shewanella sp. ANA-3 4477053 YP_868487.1 CDS Shewana3_0843 NC_008577.1 976817 977644 D KEGG: son:SO3749 hypothetical protein; hypothetical protein 976817..977644 Shewanella sp. ANA-3 4477054 YP_868488.1 CDS Shewana3_0844 NC_008577.1 977741 978655 R PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: son:SO3748 LysM domain protein; ErfK/YbiS/YcfS/YnhG family protein complement(977741..978655) Shewanella sp. ANA-3 4477055 YP_868489.1 CDS Shewana3_0845 NC_008577.1 978827 980383 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator complement(978827..980383) Shewanella sp. ANA-3 4477056 YP_868490.1 CDS Shewana3_0846 NC_008577.1 980576 982861 R KEGG: rfr:Rfer_1886 putative nitric oxide reductase (subunit B) transmembrane protein; putative nitric oxide reductase (subunit B) transmembrane protein complement(980576..982861) Shewanella sp. ANA-3 4477057 YP_868491.1 CDS Shewana3_0847 NC_008577.1 983483 985207 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 983483..985207 Shewanella sp. ANA-3 4477058 YP_868492.1 CDS Shewana3_0848 NC_008577.1 985378 986229 R TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: son:SO3746 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase complement(985378..986229) Shewanella sp. ANA-3 4477059 YP_868493.1 CDS Shewana3_0849 NC_008577.1 986407 987837 D catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 986407..987837 Shewanella sp. ANA-3 4477060 YP_868494.1 CDS Shewana3_0850 NC_008577.1 987834 988661 D KEGG: son:SO3744 hypothetical protein; hypothetical protein 987834..988661 Shewanella sp. ANA-3 4477061 YP_868495.1 CDS Shewana3_0851 NC_008577.1 988815 989294 D PFAM: regulatory protein, TetR; KEGG: son:SO3743 transcriptional regulator, TetR family; TetR family transcriptional regulator 988815..989294 Shewanella sp. ANA-3 4477062 YP_868496.1 CDS Shewana3_0852 NC_008577.1 989381 989770 R KEGG: son:SO3741.1 hypothetical protein; hypothetical protein complement(989381..989770) Shewanella sp. ANA-3 4477063 YP_868497.1 CDS pntB NC_008577.1 989925 991409 R catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase complement(989925..991409) Shewanella sp. ANA-3 4477064 YP_868498.1 CDS pntA NC_008577.1 991421 992947 R forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha complement(991421..992947) Shewanella sp. ANA-3 4477065 YP_868499.1 CDS Shewana3_0855 NC_008577.1 993365 995179 D TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: son:SO3738 sulfite reductase (NADPH) flavoprotein alpha-component; sulfite reductase (NADPH) subunit alpha 993365..995179 Shewanella sp. ANA-3 4477066 YP_868500.1 CDS Shewana3_0856 NC_008577.1 995254 996951 D hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 995254..996951 Shewanella sp. ANA-3 4477067 YP_868501.1 CDS Shewana3_0857 NC_008577.1 996944 997741 D catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 996944..997741 Shewanella sp. ANA-3 4477068 YP_868502.1 CDS mtgA NC_008577.1 998418 999203 D glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 998418..999203 Shewanella sp. ANA-3 4477069 YP_868503.1 CDS Shewana3_0859 NC_008577.1 999571 1001307 D KEGG: son:SO3733 hypothetical protein; hypothetical protein 999571..1001307 Shewanella sp. ANA-3 4477070 YP_868504.1 CDS Shewana3_0860 NC_008577.1 1001361 1002908 R KEGG: son:SO3731 hypothetical protein; hypothetical protein complement(1001361..1002908) Shewanella sp. ANA-3 4477071 YP_868505.1 CDS Shewana3_0861 NC_008577.1 1003095 1003979 R PFAM: phospholipase A1; KEGG: hch:HCH_01113 outer membrane phospholipase A; phospholipase A1 complement(1003095..1003979) Shewanella sp. ANA-3 4477072 YP_868506.1 CDS Shewana3_0862 NC_008577.1 1004410 1005240 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO3728 uroporphyrin-III C-methyltransferase; uroporphyrinogen-III C-methyltransferase 1004410..1005240 Shewanella sp. ANA-3 4477073 YP_868507.1 CDS Shewana3_0863 NC_008577.1 1005319 1006227 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 1005319..1006227 Shewanella sp. ANA-3 4477074 YP_868508.1 CDS cysN NC_008577.1 1006357 1007799 D may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 1006357..1007799 Shewanella sp. ANA-3 4477075 YP_868509.1 CDS Shewana3_0865 NC_008577.1 1007803 1009527 D PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ppr:PBPRA3309 putative sodium/sulfate symporter; TrkA domain-containing protein 1007803..1009527 Shewanella sp. ANA-3 4477076 YP_868510.1 CDS Shewana3_0866 NC_008577.1 1009575 1010192 D converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 1009575..1010192 Shewanella sp. ANA-3 4477077 YP_868511.1 CDS Shewana3_0867 NC_008577.1 1010184 1012082 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_01618 signal transduction histidine kinase regulating C4-dicarboxylate transport system; ATPase domain-containing protein complement(1010184..1012082) Shewanella sp. ANA-3 4477078 YP_868512.1 CDS Shewana3_0868 NC_008577.1 1012082 1014313 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: hch:HCH_01619 FOG: EAL domain; diguanylate cyclase/phosphodiesterase complement(1012082..1014313) Shewanella sp. ANA-3 4477079 YP_868513.1 CDS Shewana3_0869 NC_008577.1 1014454 1015293 R KEGG: son:SO3722 hypothetical protein; hypothetical protein complement(1014454..1015293) Shewanella sp. ANA-3 4477080 YP_868514.1 CDS Shewana3_0870 NC_008577.1 1015419 1016624 R PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_0120 transporter, MFS superfamily; major facilitator superfamily transporter complement(1015419..1016624) Shewanella sp. ANA-3 4477081 YP_868515.1 CDS Shewana3_0871 NC_008577.1 1017066 1017587 D KEGG: son:SO3720 protoporphyrinogen oxidase; protoporphyrinogen oxidase 1017066..1017587 Shewanella sp. ANA-3 4477082 YP_868516.1 CDS Shewana3_0872 NC_008577.1 1017629 1018156 D KEGG: son:SO3719 hypothetical protein; hypothetical protein 1017629..1018156 Shewanella sp. ANA-3 4477083 YP_868517.1 CDS Shewana3_0873 NC_008577.1 1018421 1019428 D KEGG: vpa:VP0375 putative lipoprotein; putative lipoprotein 1018421..1019428 Shewanella sp. ANA-3 4477084 YP_868518.1 CDS Shewana3_0874 NC_008577.1 1019552 1020304 R PFAM: DSBA oxidoreductase; KEGG: son:SO3718 thiol:disulfide interchange protein, DsbA family; DSBA oxidoreductase complement(1019552..1020304) Shewanella sp. ANA-3 4477085 YP_868519.1 CDS Shewana3_0875 NC_008577.1 1020558 1021202 R PFAM: heat shock protein DnaJ domain protein; KEGG: son:SO3716 DnaJ domain protein; formate dehydrogenase complement(1020558..1021202) Shewanella sp. ANA-3 4477086 YP_868520.1 CDS Shewana3_0876 NC_008577.1 1021510 1022163 R catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase complement(1021510..1022163) Shewanella sp. ANA-3 4477087 YP_868521.1 CDS Shewana3_0877 NC_008577.1 1022525 1023535 D KEGG: son:SO3714 sugar-binding protein, putative; sugar-binding protein 1022525..1023535 Shewanella sp. ANA-3 4477088 YP_868522.1 CDS Shewana3_0878 NC_008577.1 1023925 1025547 D hypothetical protein 1023925..1025547 Shewanella sp. ANA-3 4477089 YP_868523.1 CDS Shewana3_0879 NC_008577.1 1025709 1026392 D hypothetical protein 1025709..1026392 Shewanella sp. ANA-3 4477090 YP_868524.1 CDS Shewana3_0880 NC_008577.1 1026759 1027484 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1042 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein complement(1026759..1027484) Shewanella sp. ANA-3 4477091 YP_868525.1 CDS Shewana3_0881 NC_008577.1 1027477 1028157 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1043 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit complement(1027477..1028157) Shewanella sp. ANA-3 4477092 YP_868526.1 CDS Shewana3_0882 NC_008577.1 1028163 1028897 R PFAM: extracellular solute-binding protein, family 3; KEGG: son:SO1044 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein complement(1028163..1028897) Shewanella sp. ANA-3 4477093 YP_868527.1 CDS Shewana3_0883 NC_008577.1 1029272 1030096 D KEGG: son:SO1045 hypothetical protein; hypothetical protein 1029272..1030096 Shewanella sp. ANA-3 4477094 YP_868528.1 CDS Shewana3_0884 NC_008577.1 1030101 1030991 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1046 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1030101..1030991) Shewanella sp. ANA-3 4477095 YP_868529.1 CDS Shewana3_0885 NC_008577.1 1031112 1031546 D PFAM: LrgA family protein; KEGG: son:SO1047 holin-like protein; LrgA family protein 1031112..1031546 Shewanella sp. ANA-3 4477096 YP_868530.1 CDS Shewana3_0886 NC_008577.1 1031546 1032280 D PFAM: LrgB family protein; KEGG: son:SO1048 hypothetical protein; LrgB family protein 1031546..1032280 Shewanella sp. ANA-3 4477097 YP_868531.1 CDS Shewana3_0887 NC_008577.1 1032465 1032941 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1049 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1032465..1032941 Shewanella sp. ANA-3 4477098 YP_868532.1 CDS Shewana3_0888 NC_008577.1 1033169 1034644 D PFAM: carbon starvation protein CstA; KEGG: pha:PSHAb0210 cold-shock regulated carbon starvation protein A; carbon starvation protein CstA 1033169..1034644 Shewanella sp. ANA-3 4477099 YP_868533.1 CDS mdoD NC_008577.1 1034901 1036577 D involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 1034901..1036577 Shewanella sp. ANA-3 4477100 YP_868534.1 CDS Shewana3_0890 NC_008577.1 1036665 1037381 R Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase complement(1036665..1037381) Shewanella sp. ANA-3 4477101 YP_868535.1 CDS Shewana3_0891 NC_008577.1 1037402 1038280 D PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: vpa:VPA1697 putative transcriptional regulator; AraC family transcriptional regulator 1037402..1038280 Shewanella sp. ANA-3 4477102 YP_868536.1 CDS Shewana3_0892 NC_008577.1 1038528 1039997 D PFAM: phosphate transporter; KEGG: son:SO1052 low-affinity inorganic phosphate transporter; phosphate transporter 1038528..1039997 Shewanella sp. ANA-3 4477103 YP_868537.1 CDS Shewana3_0893 NC_008577.1 1040010 1040960 R PFAM: protein of unknown function DUF72; KEGG: son:SO1053.2 hypothetical protein; hypothetical protein complement(1040010..1040960) Shewanella sp. ANA-3 4477104 YP_868538.1 CDS Shewana3_0894 NC_008577.1 1041198 1042646 D KEGG: son:SO1055 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase 1041198..1042646 Shewanella sp. ANA-3 4477105 YP_868539.1 CDS Shewana3_0895 NC_008577.1 1042753 1044645 R PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: son:SO1056 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(1042753..1044645) Shewanella sp. ANA-3 4477106 YP_868540.1 CDS Shewana3_0897 NC_008577.1 1046531 1049164 R TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO1059 aminopeptidase N; aminopeptidase N complement(1046531..1049164) Shewanella sp. ANA-3 4477108 YP_868541.1 CDS Shewana3_0898 NC_008577.1 1049406 1050011 R KEGG: son:SO1060 hypothetical protein; hypothetical protein complement(1049406..1050011) Shewanella sp. ANA-3 4477109 YP_868542.1 CDS Shewana3_0899 NC_008577.1 1050067 1051467 R PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO1061 TPR domain protein; hypothetical protein complement(1050067..1051467) Shewanella sp. ANA-3 4477110 YP_868543.1 CDS Shewana3_0900 NC_008577.1 1051477 1052007 R TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; KEGG: son:SO1062 polypeptide deformylase; peptide deformylase complement(1051477..1052007) Shewanella sp. ANA-3 4477111 YP_868544.1 CDS Shewana3_0901 NC_008577.1 1052070 1052282 R PFAM: SlyX family protein; KEGG: son:SO1063 SlyX protein; SlyX family protein complement(1052070..1052282) Shewanella sp. ANA-3 4477112 YP_868545.1 CDS Shewana3_0902 NC_008577.1 1052292 1053242 R PFAM: WD-40 repeat protein; KEGG: son:SO1064 hypothetical WD domain protein; WD-40 repeat-containing protein complement(1052292..1053242) Shewanella sp. ANA-3 4477113 YP_868546.1 CDS Shewana3_0903 NC_008577.1 1053397 1054167 D PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1065 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA; peptidylprolyl isomerase, FKBP-type 1053397..1054167 Shewanella sp. ANA-3 4477114 YP_868547.1 CDS Shewana3_0904 NC_008577.1 1054793 1057405 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: son:SO1066 extracellular nuclease; endonuclease/exonuclease/phosphatase 1054793..1057405 Shewanella sp. ANA-3 4477115 YP_868548.1 CDS Shewana3_0905 NC_008577.1 1057535 1057990 D KEGG: son:SO1067 hypothetical protein; hypothetical protein 1057535..1057990 Shewanella sp. ANA-3 4477116 YP_868549.1 CDS Shewana3_0906 NC_008577.1 1058099 1058536 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: son:SO1068 hypothetical protein; hypothetical protein 1058099..1058536 Shewanella sp. ANA-3 4477117 YP_868550.1 CDS Shewana3_0907 NC_008577.1 1058590 1058835 D KEGG: son:SO1069 hypothetical protein; hypothetical protein 1058590..1058835 Shewanella sp. ANA-3 4477118 YP_868551.1 CDS Shewana3_0908 NC_008577.1 1059182 1060642 D PFAM: Catalase domain protein; KEGG: son:SO1070 catalase; catalase domain-containing protein 1059182..1060642 Shewanella sp. ANA-3 4477119 YP_868552.1 CDS Shewana3_0909 NC_008577.1 1060713 1061306 R PFAM: protein of unknown function UPF0016; KEGG: son:SO1071 hypothetical protein; hypothetical protein complement(1060713..1061306) Shewanella sp. ANA-3 4477120 YP_868553.1 CDS Shewana3_0912 NC_008577.1 1063924 1065099 D PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: son:SO1074 tyrosine-specific transport protein, putative; aromatic amino acid permease 1063924..1065099 Shewanella sp. ANA-3 4477457 YP_868554.1 CDS Shewana3_0913 NC_008577.1 1065339 1067495 D KEGG: son:SO1075 hypothetical protein; dipeptidyl-peptidase 7 1065339..1067495 Shewanella sp. ANA-3 4477458 YP_868555.1 CDS Shewana3_0914 NC_008577.1 1068088 1068369 R KEGG: cps:CPS_3502 putative lipoprotein; putative lipoprotein complement(1068088..1068369) Shewanella sp. ANA-3 4477459 YP_868556.1 CDS Shewana3_0915 NC_008577.1 1069803 1071260 D PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_04311 outer membrane protein and related peptidoglycan-associated (LipO)protein; OmpA/MotB domain-containing protein 1069803..1071260 Shewanella sp. ANA-3 4477460 YP_868557.1 CDS Shewana3_0916 NC_008577.1 1071423 1072133 R TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pha:PSHAa0085 ribosomal RNA pseudouridylate synthase; pseudouridine synthase, Rsu complement(1071423..1072133) Shewanella sp. ANA-3 4477461 YP_868558.1 CDS Shewana3_0917 NC_008577.1 1072145 1072837 R KEGG: son:SO1086 hypothetical protein; hypothetical protein complement(1072145..1072837) Shewanella sp. ANA-3 4477462 YP_868559.1 CDS Shewana3_0918 NC_008577.1 1073023 1074360 R PFAM: Na+/H+ antiporter NhaC; KEGG: son:SO1087 Na+/H+ antiporter family protein; Na+/H+ antiporter NhaC complement(1073023..1074360) Shewanella sp. ANA-3 4477463 YP_868560.1 CDS Shewana3_0919 NC_008577.1 1074896 1075804 D KEGG: tbd:Tbd_0710 hypothetical protein; hypothetical protein 1074896..1075804 Shewanella sp. ANA-3 4477464 YP_868561.1 CDS Shewana3_0920 NC_008577.1 1075884 1076435 D PFAM: FMN-binding domain protein; KEGG: tbd:Tbd_0709 putative signal peptide protein; FMN-binding domain-containing protein 1075884..1076435 Shewanella sp. ANA-3 4477465 YP_868562.1 CDS Shewana3_0921 NC_008577.1 1076435 1077283 D KEGG: son:SO1090 ApbE family protein, putative; ApbE family protein 1076435..1077283 Shewanella sp. ANA-3 4477466 YP_868563.1 CDS Shewana3_0922 NC_008577.1 1077339 1077806 D KEGG: tcx:Tcr_0415 hypothetical protein; hypothetical protein 1077339..1077806 Shewanella sp. ANA-3 4477467 YP_868564.1 CDS Shewana3_0923 NC_008577.1 1077891 1079522 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ilo:IL2343 methyl-accepting chemotaxis protein (contains HAMP domain); methyl-accepting chemotaxis sensory transducer complement(1077891..1079522) Shewanella sp. ANA-3 4477468 YP_868565.1 CDS Shewana3_0924 NC_008577.1 1079666 1080556 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO1091 hypothetical protein; hypothetical protein complement(1079666..1080556) Shewanella sp. ANA-3 4477469 YP_868566.1 CDS Shewana3_0925 NC_008577.1 1080749 1081528 D PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: son:SO1092 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator 1080749..1081528 Shewanella sp. ANA-3 4477470 YP_868567.1 CDS Shewana3_0926 NC_008577.1 1082097 1082483 R KEGG: son:SO1094 hypothetical transcription elongation factor; GreA/GreB family elongation factor complement(1082097..1082483) Shewanella sp. ANA-3 4477471 YP_868568.1 CDS Shewana3_0927 NC_008577.1 1083139 1084146 R TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: ppu:PP4650 ubiquinol oxidase subunit II, cyanide insensitive; cytochrome d ubiquinol oxidase subunit II complement(1083139..1084146) Shewanella sp. ANA-3 4477472 YP_868569.1 CDS Shewana3_0928 NC_008577.1 1084202 1085542 R PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: ppu:PP4651 ubiquinol oxidase subunit I, cyanide insensitive; cytochrome bd ubiquinol oxidase subunit I complement(1084202..1085542) Shewanella sp. ANA-3 4477473 YP_868570.1 CDS Shewana3_0929 NC_008577.1 1085688 1087100 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: eca:ECA3004 putative bifunctional protein, includes [GntR-family transcriptional regulator and aminotransferase]; GntR family transcriptional regulator 1085688..1087100 Shewanella sp. ANA-3 4478855 YP_868571.1 CDS Shewana3_0930 NC_008577.1 1087331 1088623 D TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO1095 O-acetylhomoserine (thiol)-lyase; O-acetylhomoserine/O-acetylserine sulfhydrylase 1087331..1088623 Shewanella sp. ANA-3 4478856 YP_868572.1 CDS Shewana3_0931 NC_008577.1 1088696 1091842 R KEGG: son:SO1096 hypothetical protein; hypothetical protein complement(1088696..1091842) Shewanella sp. ANA-3 4478857 YP_868573.1 CDS Shewana3_0932 NC_008577.1 1092050 1093183 R PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO1097 putative ribosomal RNA small subunit methyltransferase D; methyltransferase small complement(1092050..1093183) Shewanella sp. ANA-3 4478858 YP_868574.1 CDS Shewana3_0933 NC_008577.1 1093373 1094032 D PFAM: 2OG-Fe(II) oxygenase; KEGG: son:SO1098 hypothetical alkylated DNA repair protein; DNA-N1-methyladenine dioxygenase 1093373..1094032 Shewanella sp. ANA-3 4478859 YP_868575.1 CDS Shewana3_0934 NC_008577.1 1094167 1094487 D PFAM: BolA family protein; KEGG: son:SO1099 bolA protein; transcriptional regulator BolA 1094167..1094487 Shewanella sp. ANA-3 4478860 YP_868576.1 CDS Shewana3_0935 NC_008577.1 1094748 1095860 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: son:SO1100 extracellular solute-binding protein, family 7; TRAP dicarboxylate transporter- DctP subunit 1094748..1095860 Shewanella sp. ANA-3 4478861 YP_868577.1 CDS Shewana3_0936 NC_008577.1 1096016 1096525 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1096016..1096525 Shewanella sp. ANA-3 4478862 YP_868578.1 CDS Shewana3_0937 NC_008577.1 1096680 1098731 D PFAM: TonB-dependent receptor; KEGG: son:SO1102 TonB-dependent receptor C-terminal region domain lipoprotein; TonB-dependent receptor 1096680..1098731 Shewanella sp. ANA-3 4478863 YP_868579.1 CDS Shewana3_0938 NC_008577.1 1099135 1100469 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 1099135..1100469 Shewanella sp. ANA-3 4478864 YP_868580.1 CDS Shewana3_0939 NC_008577.1 1100469 1101668 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 1100469..1101668 Shewanella sp. ANA-3 4478865 YP_868581.1 CDS Shewana3_0940 NC_008577.1 1101661 1102449 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 1101661..1102449 Shewanella sp. ANA-3 4478866 YP_868582.1 CDS Shewana3_0941 NC_008577.1 1102449 1103081 D Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 1102449..1103081 Shewanella sp. ANA-3 4478867 YP_868583.1 CDS Shewana3_0942 NC_008577.1 1103088 1103696 D Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 1103088..1103696 Shewanella sp. ANA-3 4478868 YP_868584.1 CDS Shewana3_0943 NC_008577.1 1103743 1104999 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1103743..1104999 Shewanella sp. ANA-3 4478869 YP_868585.1 CDS Shewana3_0944 NC_008577.1 1105032 1106156 D PFAM: ApbE family lipoprotein; KEGG: son:SO1109 thiamin biosynthesis lipoprotein ApbE; ApbE family lipoprotein 1105032..1106156 Shewanella sp. ANA-3 4478870 YP_868586.1 CDS Shewana3_0945 NC_008577.1 1106168 1106392 D PFAM: protein of unknown function DUF539; KEGG: son:SO1110 hypothetical protein; hypothetical protein 1106168..1106392 Shewanella sp. ANA-3 4478871 YP_868587.1 CDS Shewana3_0946 NC_008577.1 1106631 1107104 D TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: son:SO1111 bacterioferritin subunit 2; bacterioferritin 1106631..1107104 Shewanella sp. ANA-3 4478872 YP_868588.1 CDS Shewana3_0947 NC_008577.1 1107114 1107581 D TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: son:SO1112 bacterioferritin subunit 1; bacterioferritin 1107114..1107581 Shewanella sp. ANA-3 4478873 YP_868589.1 CDS Shewana3_0948 NC_008577.1 1107881 1109884 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO1112.1 hypothetical chemotactic transducer; methyl-accepting chemotaxis sensory transducer 1107881..1109884 Shewanella sp. ANA-3 4478874 YP_868590.1 CDS Shewana3_0949 NC_008577.1 1110035 1111114 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 1110035..1111114 Shewanella sp. ANA-3 4478875 YP_868591.1 CDS Shewana3_0950 NC_008577.1 1111290 1112753 R TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: son:SO1115 aminoacyl-histidine dipeptidase; M20C family Xaa-His dipeptidase complement(1111290..1112753) Shewanella sp. ANA-3 4478876 YP_868592.1 CDS Shewana3_0951 NC_008577.1 1112972 1114510 D PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: son:SO1117 cytosol aminopeptidase, putative; dihydrofolate reductase 1112972..1114510 Shewanella sp. ANA-3 4478877 YP_868593.1 CDS Shewana3_0952 NC_008577.1 1115429 1117618 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ilo:IL1581 outer membrane receptor for ferric siderophore; TonB-dependent siderophore receptor 1115429..1117618 Shewanella sp. ANA-3 4478878 YP_868594.1 CDS Shewana3_0953 NC_008577.1 1118027 1119316 D PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: son:SO1120 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease 1118027..1119316 Shewanella sp. ANA-3 4478879 YP_868595.1 CDS Shewana3_0954 NC_008577.1 1119491 1120609 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1119491..1120609 Shewanella sp. ANA-3 4478880 YP_868596.1 CDS proA NC_008577.1 1120622 1121899 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1120622..1121899 Shewanella sp. ANA-3 4478881 YP_868597.1 CDS Shewana3_0956 NC_008577.1 1121973 1122275 R KEGG: son:SO1123 hypothetical protein; hypothetical protein complement(1121973..1122275) Shewanella sp. ANA-3 4478882 YP_868598.1 CDS Shewana3_0957 NC_008577.1 1122400 1122876 R TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: son:SO1124 conserved hypothetical protein TIGR00011; ybaK/ebsC protein complement(1122400..1122876) Shewanella sp. ANA-3 4478883 YP_868599.1 CDS Shewana3_0958 NC_008577.1 1123006 1123926 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO1125 integral membrane domain protein; hypothetical protein complement(1123006..1123926) Shewanella sp. ANA-3 4478884 YP_868600.1 CDS dnaK NC_008577.1 1124212 1126131 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1124212..1126131 Shewanella sp. ANA-3 4478885 YP_868601.1 CDS Shewana3_0960 NC_008577.1 1126241 1127374 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1126241..1127374 Shewanella sp. ANA-3 4478886 YP_868602.1 CDS Shewana3_0961 NC_008577.1 1127762 1128826 R PFAM: protein of unknown function DUF450; KEGG: vpa:VPA1572 hypothetical protein; hypothetical protein complement(1127762..1128826) Shewanella sp. ANA-3 4478887 YP_868603.1 CDS Shewana3_0962 NC_008577.1 1129361 1130692 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO1136 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 1129361..1130692 Shewanella sp. ANA-3 4478888 YP_868604.1 CDS Shewana3_0963 NC_008577.1 1130825 1131418 D PFAM: GCN5-related N-acetyltransferase; KEGG: bpm:BURPS1710b_2160 ribosomal-protein-serine acetyltransferase; N-acetyltransferase GCN5 1130825..1131418 Shewanella sp. ANA-3 4478889 YP_868605.1 CDS Shewana3_0964 NC_008577.1 1131543 1132352 D PFAM: peptidase M48, Ste24p; KEGG: son:SO1137 hypothetical protein; peptidase M48, Ste24p 1131543..1132352 Shewanella sp. ANA-3 4478890 YP_868606.1 CDS Shewana3_0965 NC_008577.1 1132545 1133162 D PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1139 peptidyl-prolyl cis-trans isomerase FklB; peptidylprolyl isomerase, FKBP-type 1132545..1133162 Shewanella sp. ANA-3 4478891 YP_868607.1 CDS Shewana3_0966 NC_008577.1 1133235 1134047 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1133235..1134047 Shewanella sp. ANA-3 4478892 YP_868608.1 CDS Shewana3_0967 NC_008577.1 1134216 1135376 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1134216..1135376 Shewanella sp. ANA-3 4478893 YP_868609.1 CDS carB NC_008577.1 1135404 1138628 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1135404..1138628 Shewanella sp. ANA-3 4478894 YP_868610.1 CDS Shewana3_0969 NC_008577.1 1138711 1139478 R SMART: extracellular solute-binding protein, family 3; KEGG: son:SO1143 hypothetical protein; extracellular solute-binding protein complement(1138711..1139478) Shewanella sp. ANA-3 4478895 YP_868611.1 CDS Shewana3_0970 NC_008577.1 1139692 1140780 R PFAM: chemotaxis sensory transducer; KEGG: son:SO1144 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(1139692..1140780) Shewanella sp. ANA-3 4478896 YP_868612.1 CDS Shewana3_0971 NC_008577.1 1141073 1142446 R TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO1145 magnesium transporter; magnesium transporter complement(1141073..1142446) Shewanella sp. ANA-3 4478897 YP_868613.1 CDS Shewana3_0972 NC_008577.1 1142469 1143170 R KEGG: son:SO1146 hypothetical protein; hypothetical protein complement(1142469..1143170) Shewanella sp. ANA-3 4478898 YP_868614.1 CDS Shewana3_0973 NC_008577.1 1143851 1144984 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: son:SO1148 hypothetical protein; endonuclease/exonuclease/phosphatase 1143851..1144984 Shewanella sp. ANA-3 4478899 YP_868615.1 CDS Shewana3_0974 NC_008577.1 1144996 1145811 R KEGG: cps:CPS_3405 hypothetical protein; hypothetical protein complement(1144996..1145811) Shewanella sp. ANA-3 4478900 YP_868616.1 CDS Shewana3_0975 NC_008577.1 1145808 1146689 R PFAM: protein of unknown function DUF692; KEGG: cps:CPS_3406 hypothetical protein; hypothetical protein complement(1145808..1146689) Shewanella sp. ANA-3 4478901 YP_868617.1 CDS Shewana3_0976 NC_008577.1 1146768 1147220 R KEGG: cps:CPS_3407 putative lipoprotein; putative lipoprotein complement(1146768..1147220) Shewanella sp. ANA-3 4478902 YP_868618.1 CDS Shewana3_0977 NC_008577.1 1147689 1148879 D SMART: PUA domain containing protein; KEGG: son:SO1149 hypothetical SAM-dependent methyltransferase; SAM-dependent methyltransferase 1147689..1148879 Shewanella sp. ANA-3 4478903 YP_868619.1 CDS Shewana3_0978 NC_008577.1 1148971 1149630 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(1148971..1149630) Shewanella sp. ANA-3 4478904 YP_868620.1 CDS Shewana3_0979 NC_008577.1 1149941 1150867 D PFAM: protein of unknown function DUF808; KEGG: son:SO1151 hypothetical protein; hypothetical protein 1149941..1150867 Shewanella sp. ANA-3 4478905 YP_868621.1 CDS Shewana3_0980 NC_008577.1 1150972 1151883 D PFAM: 3'-5' exonuclease; KEGG: son:SO1153 exonuclease, putative; 3'-5' exonuclease 1150972..1151883 Shewanella sp. ANA-3 4478906 YP_868622.1 CDS Shewana3_0981 NC_008577.1 1151928 1152896 D KEGG: son:SO1154 hypothetical protein; hypothetical protein 1151928..1152896 Shewanella sp. ANA-3 4478907 YP_868623.1 CDS Shewana3_0982 NC_008577.1 1153449 1153727 D KEGG: son:SO1155 hypothetical protein; hypothetical protein 1153449..1153727 Shewanella sp. ANA-3 4477510 YP_868624.1 CDS Shewana3_0983 NC_008577.1 1153788 1155959 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1156 TonB-dependent receptor; TonB-dependent siderophore receptor 1153788..1155959 Shewanella sp. ANA-3 4477511 YP_868625.1 CDS Shewana3_0984 NC_008577.1 1155949 1157154 D KEGG: son:SO1157 hypothetical protein; hypothetical protein 1155949..1157154 Shewanella sp. ANA-3 4477512 YP_868626.1 CDS Shewana3_0985 NC_008577.1 1157239 1157706 R PFAM: Ferritin, Dps family protein; KEGG: son:SO1158 Dps family protein; Ferritin, Dps family protein complement(1157239..1157706) Shewanella sp. ANA-3 4477513 YP_868627.1 CDS Shewana3_0986 NC_008577.1 1157936 1158286 D KEGG: son:SO1159 hypothetical protein; hypothetical protein 1157936..1158286 Shewanella sp. ANA-3 4477514 YP_868628.1 CDS Shewana3_0987 NC_008577.1 1158382 1158834 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1160 ribosomal-protein-alanine acetyltransferase; 30S ribosomal protein S18 alanine acetyltransferase 1158382..1158834 Shewanella sp. ANA-3 4477515 YP_868629.1 CDS Shewana3_0988 NC_008577.1 1158903 1159868 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(1158903..1159868) Shewanella sp. ANA-3 4477516 YP_868630.1 CDS lipB NC_008577.1 1159865 1160518 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(1159865..1160518) Shewanella sp. ANA-3 4477517 YP_868631.1 CDS Shewana3_0990 NC_008577.1 1160611 1160877 R PFAM: protein of unknown function DUF493; KEGG: son:SO1163 hypothetical protein; hypothetical protein complement(1160611..1160877) Shewanella sp. ANA-3 4477518 YP_868632.1 CDS Shewana3_0991 NC_008577.1 1160999 1162174 R PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: son:SO1164 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 complement(1160999..1162174) Shewanella sp. ANA-3 4477519 YP_868633.1 CDS Shewana3_0992 NC_008577.1 1162319 1163161 R TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: son:SO1165 rare lipoprotein A; rare lipoprotein A complement(1162319..1163161) Shewanella sp. ANA-3 4477520 YP_868634.1 CDS Shewana3_0993 NC_008577.1 1163145 1164209 R TIGRFAM: lytic murein transglycosylase B; KEGG: son:SO1166 membrane-bound lytic transglycosylase, putative; lytic murein transglycosylase B complement(1163145..1164209) Shewanella sp. ANA-3 4477521 YP_868635.1 CDS Shewana3_0994 NC_008577.1 1164227 1165330 R TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: son:SO1167 rod shape-determining protein RodA; rod shape-determining protein RodA complement(1164227..1165330) Shewanella sp. ANA-3 4477522 YP_868636.1 CDS Shewana3_0995 NC_008577.1 1165327 1167183 R PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: son:SO1168 penicillin-binding protein 2; peptidoglycan glycosyltransferase complement(1165327..1167183) Shewanella sp. ANA-3 4477523 YP_868637.1 CDS Shewana3_0996 NC_008577.1 1167244 1167714 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(1167244..1167714) Shewanella sp. ANA-3 4477524 YP_868638.1 CDS Shewana3_0997 NC_008577.1 1167714 1168058 R TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: son:SO1170 iojap domain protein; iojap family protein complement(1167714..1168058) Shewanella sp. ANA-3 4477525 YP_868639.1 CDS Shewana3_0998 NC_008577.1 1168161 1168799 R TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; KEGG: son:SO1171 nicotinate (nicotinamide) nucleotide adenylyltransferase; nicotinate-nucleotide adenylyltransferase complement(1168161..1168799) Shewanella sp. ANA-3 4477526 YP_868640.1 CDS Shewana3_0999 NC_008577.1 1168812 1169843 R TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: son:SO1172 DNA polymerase III delta subunit; DNA polymerase III subunit delta complement(1168812..1169843) Shewanella sp. ANA-3 4477527 YP_868641.1 CDS Shewana3_1000 NC_008577.1 1169896 1170390 R PFAM: Rare lipoprotein B; KEGG: son:SO1173 rare lipoprotein B; rare lipoprotein B complement(1169896..1170390) Shewanella sp. ANA-3 4477528 YP_868642.1 CDS leuS NC_008577.1 1170450 1173029 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1170450..1173029) Shewanella sp. ANA-3 4477529 YP_868643.1 CDS Shewana3_1002 NC_008577.1 1173151 1173651 D PFAM: protein of unknown function DUF1451; KEGG: son:SO1175 hypothetical protein; hypothetical protein 1173151..1173651 Shewanella sp. ANA-3 4477530 YP_868644.1 CDS Shewana3_1003 NC_008577.1 1173713 1174207 R PFAM: methylation site containing protein; KEGG: son:SO1176 hypothetical protein; methylation site containing protein complement(1173713..1174207) Shewanella sp. ANA-3 4477531 YP_868645.1 CDS lnt NC_008577.1 1174223 1175773 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(1174223..1175773) Shewanella sp. ANA-3 4477532 YP_868646.1 CDS Shewana3_1005 NC_008577.1 1175816 1176691 R PFAM: CBS domain containing protein; transporter-associated region; KEGG: son:SO1178 magnesium and cobalt efflux protein CorC; hypothetical protein complement(1175816..1176691) Shewanella sp. ANA-3 4477533 YP_868647.1 CDS Shewana3_1006 NC_008577.1 1176731 1177192 R PFAM: protein of unknown function UPF0054; KEGG: son:SO1179 conserved hypothetical protein TIGR00043; putative metalloprotease complement(1176731..1177192) Shewanella sp. ANA-3 4477534 YP_868648.1 CDS Shewana3_1007 NC_008577.1 1177182 1178246 R PFAM: PhoH family protein; KEGG: son:SO1180 PhoH family protein; PhoH family protein complement(1177182..1178246) Shewanella sp. ANA-3 4477535 YP_868649.1 CDS Shewana3_1008 NC_008577.1 1178510 1179934 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1178510..1179934) Shewanella sp. ANA-3 4477536 YP_868650.1 CDS Shewana3_1009 NC_008577.1 1180074 1180406 R KEGG: son:SO1182 hypothetical protein; hypothetical protein complement(1180074..1180406) Shewanella sp. ANA-3 4477537 YP_868651.1 CDS Shewana3_1010 NC_008577.1 1180756 1181982 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO1183 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 1180756..1181982 Shewanella sp. ANA-3 4477538 YP_868652.1 CDS Shewana3_1011 NC_008577.1 1182150 1182737 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1182150..1182737 Shewanella sp. ANA-3 4477539 YP_868653.1 CDS Shewana3_1012 NC_008577.1 1182877 1183968 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1182877..1183968 Shewanella sp. ANA-3 4477540 YP_868654.1 CDS Shewana3_1013 NC_008577.1 1185256 1185891 R KEGG: son:SO1187 hypothetical protein; hypothetical protein complement(1185256..1185891) Shewanella sp. ANA-3 4479356 YP_868655.1 CDS Shewana3_1014 NC_008577.1 1186375 1186908 D KEGG: son:SO1188 hypothetical protein; hypothetical protein 1186375..1186908 Shewanella sp. ANA-3 4479357 YP_868656.1 CDS Shewana3_1015 NC_008577.1 1186922 1187437 D KEGG: son:SO1189 lysozyme; hypothetical protein 1186922..1187437 Shewanella sp. ANA-3 4479358 YP_868657.1 CDS Shewana3_1016 NC_008577.1 1187467 1188285 D KEGG: son:SO1190 hypothetical protein; hypothetical protein 1187467..1188285 Shewanella sp. ANA-3 4479359 YP_868658.1 CDS Shewana3_1017 NC_008577.1 1188536 1189012 D TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: son:SO1191 transcription elongation factor GreA; transcription elongation factor GreA 1188536..1189012 Shewanella sp. ANA-3 4479360 YP_868659.1 CDS Shewana3_1018 NC_008577.1 1189315 1189842 D KEGG: son:SO1192 hypothetical protein; hypothetical protein 1189315..1189842 Shewanella sp. ANA-3 4479361 YP_868660.1 CDS secD NC_008577.1 1190220 1192094 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1190220..1192094 Shewanella sp. ANA-3 4479362 YP_868661.1 CDS secF NC_008577.1 1192097 1192981 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1192097..1192981 Shewanella sp. ANA-3 4479363 YP_868662.1 CDS Shewana3_1021 NC_008577.1 1193039 1193338 R PFAM: protein of unknown function UPF0044; KEGG: son:SO1195 putative RNA-binding protein containing KH domain; hypothetical protein complement(1193039..1193338) Shewanella sp. ANA-3 4479364 YP_868663.1 CDS rrmJ NC_008577.1 1193429 1194058 D Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 1193429..1194058 Shewanella sp. ANA-3 4479365 YP_868664.1 CDS Shewana3_1023 NC_008577.1 1194088 1196061 D KEGG: son:SO1197 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; membrane protease FtsH catalytic subunit 1194088..1196061 Shewanella sp. ANA-3 4479366 YP_868665.1 CDS Shewana3_1024 NC_008577.1 1196220 1197053 D TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; KEGG: son:SO1198 dihydropteroate synthase; dihydropteroate synthase 1196220..1197053 Shewanella sp. ANA-3 4479367 YP_868666.1 CDS glmM NC_008577.1 1197128 1198465 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1197128..1198465 Shewanella sp. ANA-3 4479368 YP_868667.1 CDS Shewana3_1026 NC_008577.1 1198659 1199441 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1198659..1199441 Shewanella sp. ANA-3 4479369 YP_868668.1 CDS secG NC_008577.1 1199443 1199775 D TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: son:SO1201 preprotein translocase, SecG subunit; preprotein translocase subunit SecG 1199443..1199775 Shewanella sp. ANA-3 4479370 YP_868669.1 CDS Shewana3_1028 NC_008577.1 1200204 1200659 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1200204..1200659 Shewanella sp. ANA-3 4479373 YP_868670.1 CDS nusA NC_008577.1 1200689 1202188 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1200689..1202188 Shewanella sp. ANA-3 4479374 YP_868671.1 CDS infB NC_008577.1 1202214 1204883 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1202214..1204883 Shewanella sp. ANA-3 4479375 YP_868672.1 CDS rbfA NC_008577.1 1204946 1205386 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1204946..1205386 Shewanella sp. ANA-3 4479376 YP_868673.1 CDS truB NC_008577.1 1205386 1206339 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1205386..1206339 Shewanella sp. ANA-3 4479377 YP_868674.1 CDS rpsO NC_008577.1 1206466 1206735 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1206466..1206735 Shewanella sp. ANA-3 4479378 YP_868675.1 CDS Shewana3_1034 NC_008577.1 1206822 1208846 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO1208 GGDEF domain protein; diguanylate cyclase/phosphodiesterase complement(1206822..1208846) Shewanella sp. ANA-3 4479379 YP_868676.1 CDS Shewana3_1035 NC_008577.1 1209065 1211164 D PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: son:SO1209 polyribonucleotide nucleotidyltransferase; polynucleotide phosphorylase/polyadenylase 1209065..1211164 Shewanella sp. ANA-3 4479380 YP_868677.1 CDS Shewana3_1036 NC_008577.1 1211356 1212258 D lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 1211356..1212258 Shewanella sp. ANA-3 4479381 YP_868678.1 CDS prfC NC_008577.1 1212358 1213938 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1212358..1213938 Shewanella sp. ANA-3 4479382 YP_868679.1 CDS Shewana3_1038 NC_008577.1 1214197 1214964 D PFAM: TatD-related deoxyribonuclease; KEGG: son:SO1213 hydrolase, TatD family; TatD-related deoxyribonuclease 1214197..1214964 Shewanella sp. ANA-3 4479383 YP_868680.1 CDS Shewana3_1039 NC_008577.1 1215141 1216400 D PFAM: Na dependent nucleoside transporter; nucleoside recognition domain protein; Na dependent nucleoside transporter domain protein; KEGG: son:SO1214 NupC family protein; Na+ dependent nucleoside transporter 1215141..1216400 Shewanella sp. ANA-3 4479384 YP_868681.1 CDS Shewana3_1040 NC_008577.1 1216736 1217575 D PFAM: nucleoside-specific channel-forming protein, Tsx; KEGG: son:SO1215 outer membrane protein OmpK, putative; nucleoside-specific channel-forming protein, Tsx 1216736..1217575 Shewanella sp. ANA-3 4479385 YP_868682.1 CDS Shewana3_1041 NC_008577.1 1217990 1218760 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1217990..1218760 Shewanella sp. ANA-3 4479386 YP_868683.1 CDS deoA NC_008577.1 1218945 1220276 D Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 1218945..1220276 Shewanella sp. ANA-3 4479387 YP_868684.1 CDS Shewana3_1043 NC_008577.1 1220286 1221500 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 1220286..1221500 Shewanella sp. ANA-3 4479388 YP_868685.1 CDS deoD NC_008577.1 1221592 1222302 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1221592..1222302 Shewanella sp. ANA-3 4479389 YP_868686.1 CDS Shewana3_1045 NC_008577.1 1222470 1223654 R KEGG: son:SO1222 membrane protein; membrane protein complement(1222470..1223654) Shewanella sp. ANA-3 4479390 YP_868687.1 CDS Shewana3_1046 NC_008577.1 1223734 1224726 D PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO1223 phosphoserine phosphatase; phosphoserine phosphatase 1223734..1224726 Shewanella sp. ANA-3 4479391 YP_868688.1 CDS Shewana3_1047 NC_008577.1 1224809 1225810 D KEGG: son:SO1224 hypothetical protein; hypothetical protein 1224809..1225810 Shewanella sp. ANA-3 4479392 YP_868689.1 CDS Shewana3_1048 NC_008577.1 1225828 1228200 R PFAM: type IV pilus assembly PilZ; KEGG: son:SO1225 hypothetical protein; type IV pilus assembly PilZ complement(1225828..1228200) Shewanella sp. ANA-3 4479393 YP_868690.1 CDS Shewana3_1049 NC_008577.1 1228303 1229667 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1228303..1229667 Shewanella sp. ANA-3 4479394 YP_868691.1 CDS Shewana3_1050 NC_008577.1 1229753 1230145 R PFAM: type IV pilus assembly PilZ; KEGG: son:SO1227 hypothetical protein; type IV pilus assembly PilZ complement(1229753..1230145) Shewanella sp. ANA-3 4479395 YP_868692.1 CDS Shewana3_1051 NC_008577.1 1230325 1231035 D response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 1230325..1231035 Shewanella sp. ANA-3 4479396 YP_868693.1 CDS Shewana3_1052 NC_008577.1 1231087 1232154 R periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT complement(1231087..1232154) Shewanella sp. ANA-3 4479397 YP_868694.1 CDS Shewana3_1053 NC_008577.1 1232211 1235264 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: son:SO1230 sensor histidine kinase/response regulator TorS; multi-sensor hybrid histidine kinase 1232211..1235264 Shewanella sp. ANA-3 4476599 YP_868695.1 CDS torD NC_008577.1 1235485 1236114 R TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD complement(1235485..1236114) Shewanella sp. ANA-3 4476600 YP_868696.1 CDS Shewana3_1055 NC_008577.1 1236182 1238671 R TIGRFAM: Twin-arginine translocation pathway signal; trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: son:SO1232 trimethylamine-N-oxide reductase; trimethylamine-N-oxide reductase TorA complement(1236182..1238671) Shewanella sp. ANA-3 4476601 YP_868697.1 CDS Shewana3_1056 NC_008577.1 1238687 1239865 R TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO1233 tetraheme cytochrome c; trimethylamine-N-oxide reductase c-type cytochrome TorC complement(1238687..1239865) Shewanella sp. ANA-3 4476602 YP_868698.1 CDS Shewana3_1057 NC_008577.1 1239892 1240062 R PFAM: periplasmic nitrate reductase NapE; KEGG: son:SO1234 warning TorE protein; periplasmic nitrate reductase NapE complement(1239892..1240062) Shewanella sp. ANA-3 4476603 YP_868699.1 CDS Shewana3_1058 NC_008577.1 1240579 1241931 D PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: son:SO1236 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease 1240579..1241931 Shewanella sp. ANA-3 4476604 YP_868700.1 CDS Shewana3_1059 NC_008577.1 1241957 1242388 R PFAM: CBS domain containing protein; KEGG: son:SO1237 acetoin utilization protein AcuB, putative; hypothetical protein complement(1241957..1242388) Shewanella sp. ANA-3 4476605 YP_868701.1 CDS Shewana3_1060 NC_008577.1 1242489 1244363 R PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO1238 acyltransferase family protein; phospholipid/glycerol acyltransferase complement(1242489..1244363) Shewanella sp. ANA-3 4476606 YP_868702.1 CDS Shewana3_1061 NC_008577.1 1244366 1245439 R PFAM: metallophosphoesterase; KEGG: son:SO1239 hypothetical protein; metallophosphoesterase complement(1244366..1245439) Shewanella sp. ANA-3 4476607 YP_868703.1 CDS Shewana3_1062 NC_008577.1 1247092 1248450 R PFAM: nucleoside recognition domain protein; KEGG: son:SO1245 hypothetical protein; nucleoside recognition domain-containing protein complement(1247092..1248450) Shewanella sp. ANA-3 4476608 YP_868704.1 CDS Shewana3_1063 NC_008577.1 1249155 1249871 D KEGG: son:SO1247 hypothetical protein; hypothetical protein 1249155..1249871 Shewanella sp. ANA-3 4476609 YP_868705.1 CDS Shewana3_1064 NC_008577.1 1249906 1250823 R PFAM: peptidase U32; KEGG: son:SO1248 hypothetical peptidase; peptidase U32 complement(1249906..1250823) Shewanella sp. ANA-3 4476610 YP_868706.1 CDS Shewana3_1065 NC_008577.1 1250810 1251811 R PFAM: peptidase U32; KEGG: son:SO1249 peptidase, U32 family; peptidase U32 complement(1250810..1251811) Shewanella sp. ANA-3 4476611 YP_868707.1 CDS Shewana3_1066 NC_008577.1 1251950 1252486 D PFAM: Sterol-binding domain protein; KEGG: son:SO1250 hypothetical protein; sterol-binding domain-containing protein 1251950..1252486 Shewanella sp. ANA-3 4476612 YP_868708.1 CDS Shewana3_1067 NC_008577.1 1252573 1252824 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1251 ferredoxin, 4Fe-4S; 4Fe-4S ferredoxin complement(1252573..1252824) Shewanella sp. ANA-3 4476613 YP_868709.1 CDS Shewana3_1068 NC_008577.1 1252828 1254192 R PFAM: peptidase U32; KEGG: son:SO1252 peptidase, U32 family; peptidase U32 complement(1252828..1254192) Shewanella sp. ANA-3 4476614 YP_868710.1 CDS Shewana3_1069 NC_008577.1 1254566 1255405 D KEGG: son:SO1254 hypothetical protein; putative signal transduction protein 1254566..1255405 Shewanella sp. ANA-3 4476615 YP_868711.1 CDS Shewana3_1070 NC_008577.1 1255491 1257017 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: son:SO1255 cyclic nucleotide phosphodiesterase, putative; diguanylate cyclase/phosphodiesterase 1255491..1257017 Shewanella sp. ANA-3 4476405 YP_868712.1 CDS Shewana3_1071 NC_008577.1 1257026 1257439 R PFAM: thioesterase superfamily protein; KEGG: son:SO1256 hypothetical 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein complement(1257026..1257439) Shewanella sp. ANA-3 4476406 YP_868713.1 CDS Shewana3_1072 NC_008577.1 1257627 1258883 R PFAM: adenylosuccinate synthetase; KEGG: son:SO1258 adenylosuccinate synthetase, putative; adenylosuccinate synthetase complement(1257627..1258883) Shewanella sp. ANA-3 4476407 YP_868714.1 CDS Shewana3_1073 NC_008577.1 1259000 1259908 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1259 transcriptional regulator, LysR family; LysR family transcriptional regulator 1259000..1259908 Shewanella sp. ANA-3 4476408 YP_868715.1 CDS Shewana3_1074 NC_008577.1 1259924 1260742 R SMART: extracellular solute-binding protein, family 3; KEGG: son:SO1260 hypothetical amino acid ABC transporter; extracellular solute-binding protein complement(1259924..1260742) Shewanella sp. ANA-3 4476409 YP_868716.1 CDS Shewana3_1075 NC_008577.1 1260946 1261374 D PFAM: OsmC family protein; KEGG: son:SO3495 hypothetical protein; OsmC family protein 1260946..1261374 Shewanella sp. ANA-3 4476410 YP_868717.1 CDS Shewana3_1076 NC_008577.1 1261463 1262083 R PFAM: regulatory protein, TetR; KEGG: son:SO3494 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1261463..1262083) Shewanella sp. ANA-3 4476411 YP_868718.1 CDS Shewana3_1077 NC_008577.1 1262443 1263681 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3493 RND multidrug efflux membrane fusion protein MexE; RND family efflux transporter MFP subunit 1262443..1263681 Shewanella sp. ANA-3 4476412 YP_868719.1 CDS Shewana3_1078 NC_008577.1 1263695 1266844 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: son:SO3492 RND multidrug efflux transporter MexF; hydrophobe/amphiphile efflux-1 (HAE1) family protein 1263695..1266844 Shewanella sp. ANA-3 4476413 YP_868720.1 CDS Shewana3_1079 NC_008577.1 1266968 1268236 D KEGG: son:SO3491 HDIG domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 1266968..1268236 Shewanella sp. ANA-3 4476414 YP_868721.1 CDS Shewana3_1080 NC_008577.1 1268257 1268769 R PFAM: protein of unknown function DUF88; KEGG: son:SO3490 hypothetical protein; hypothetical protein complement(1268257..1268769) Shewanella sp. ANA-3 4476415 YP_868722.1 CDS Shewana3_1081 NC_008577.1 1268883 1269650 R PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO3488 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator complement(1268883..1269650) Shewanella sp. ANA-3 4476416 YP_868723.1 CDS Shewana3_1082 NC_008577.1 1269794 1270972 D PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3485 drug resistance transporter, Bcr/CflA family protein; major facilitator superfamily transporter 1269794..1270972 Shewanella sp. ANA-3 4476417 YP_868724.1 CDS Shewana3_1083 NC_008577.1 1271048 1274203 R PFAM: acriflavin resistance protein; KEGG: son:SO3484 AcrB/AcrD/AcrF family protein; acriflavin resistance protein complement(1271048..1274203) Shewanella sp. ANA-3 4476418 YP_868725.1 CDS Shewana3_1084 NC_008577.1 1274203 1275315 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3483 HlyD family secretion protein; RND family efflux transporter MFP subunit complement(1274203..1275315) Shewanella sp. ANA-3 4476419 YP_868726.1 CDS Shewana3_1085 NC_008577.1 1275514 1276308 R KEGG: son:SO3481 hypothetical protein; hypothetical protein complement(1275514..1276308) Shewanella sp. ANA-3 4476420 YP_868727.1 CDS Shewana3_1086 NC_008577.1 1276574 1277731 R PFAM: metallophosphoesterase; KEGG: son:SO3480 hypothetical protein phosphatase; metallophosphoesterase complement(1276574..1277731) Shewanella sp. ANA-3 4476421 YP_868728.1 CDS Shewana3_1087 NC_008577.1 1278278 1281949 D KEGG: son:SO3477 pilin biogenesis protein-related protein; undecaprenol kinase 1278278..1281949 Shewanella sp. ANA-3 4476422 YP_868729.1 CDS Shewana3_1088 NC_008577.1 1281972 1282307 D KEGG: son:SO3476 hypothetical protein; hypothetical protein 1281972..1282307 Shewanella sp. ANA-3 4476423 YP_868730.1 CDS Shewana3_1089 NC_008577.1 1282436 1283089 R KEGG: son:SO3475 putative protein-disulfide isomerase; putative protein-disulfide isomerase complement(1282436..1283089) Shewanella sp. ANA-3 4476424 YP_868731.1 CDS Shewana3_1090 NC_008577.1 1283202 1284101 R PFAM: beta-lactamase domain protein; KEGG: son:SO3474 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein complement(1283202..1284101) Shewanella sp. ANA-3 4476425 YP_868732.1 CDS Shewana3_1091 NC_008577.1 1284289 1285212 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3473 transcriptional regulator, LysR family; LysR family transcriptional regulator 1284289..1285212 Shewanella sp. ANA-3 4476426 YP_868733.1 CDS Shewana3_1092 NC_008577.1 1285477 1286484 D PFAM: conserved hypothetical protein 341; KEGG: ava:Ava_2040 hypothetical protein; hypothetical protein 1285477..1286484 Shewanella sp. ANA-3 4476427 YP_868734.1 CDS Shewana3_1093 NC_008577.1 1286560 1288227 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(1286560..1288227) Shewanella sp. ANA-3 4476428 YP_868735.1 CDS glyA NC_008577.1 1288418 1289671 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1288418..1289671 Shewanella sp. ANA-3 4476429 YP_868736.1 CDS nrdR NC_008577.1 1289882 1290331 D TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone domain protein; KEGG: son:SO3470 ATP-cone domain protein; transcriptional regulator NrdR 1289882..1290331 Shewanella sp. ANA-3 4476430 YP_868737.1 CDS Shewana3_1096 NC_008577.1 1290407 1291552 D TIGRFAM: riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase-like; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: son:SO3469 riboflavin biosynthesis protein RibD; 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase 1290407..1291552 Shewanella sp. ANA-3 4476431 YP_868738.1 CDS Shewana3_1097 NC_008577.1 1291560 1292216 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1291560..1292216 Shewanella sp. ANA-3 4476432 YP_868739.1 CDS Shewana3_1098 NC_008577.1 1292284 1293387 D TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; KEGG: son:SO3467 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative; GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase 1292284..1293387 Shewanella sp. ANA-3 4476433 YP_868740.1 CDS ribH NC_008577.1 1293461 1294003 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1293461..1294003 Shewanella sp. ANA-3 4476434 YP_868741.1 CDS nusB NC_008577.1 1294018 1294422 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1294018..1294422 Shewanella sp. ANA-3 4476435 YP_868742.1 CDS Shewana3_1101 NC_008577.1 1294501 1295457 D TIGRFAM: thiamine-monophosphate kinase; KEGG: son:SO3464 thiamin-monophosphate kinase; thiamine-monophosphate kinase 1294501..1295457 Shewanella sp. ANA-3 4476436 YP_868743.1 CDS Shewana3_1102 NC_008577.1 1295457 1295951 D KEGG: son:SO3463 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase 1295457..1295951 Shewanella sp. ANA-3 4476437 YP_868744.1 CDS Shewana3_1103 NC_008577.1 1296022 1296897 R KEGG: pha:PSHAa1851 universal stress protein; hypothetical protein complement(1296022..1296897) Shewanella sp. ANA-3 4476438 YP_868745.1 CDS Shewana3_1104 NC_008577.1 1297313 1298971 R TIGRFAM: DNA repair protein RecN; KEGG: son:SO3462 DNA repair protein RecN; recombination and repair protein complement(1297313..1298971) Shewanella sp. ANA-3 4476439 YP_868746.1 CDS Shewana3_1105 NC_008577.1 1299101 1300063 R KEGG: son:SO3461 transporter, putative; transporter complement(1299101..1300063) Shewanella sp. ANA-3 4476440 YP_868747.1 CDS Shewana3_1106 NC_008577.1 1300340 1301239 D KEGG: son:SO3460 transcriptional regulator, LysR family; LysR family transcriptional regulator 1300340..1301239 Shewanella sp. ANA-3 4476441 YP_868748.1 CDS Shewana3_1107 NC_008577.1 1301245 1301478 R KEGG: son:SO3459 hypothetical protein; hypothetical protein complement(1301245..1301478) Shewanella sp. ANA-3 4476442 YP_868749.1 CDS Shewana3_1108 NC_008577.1 1301842 1302441 R PFAM: protein of unknown function DUF416; KEGG: son:SO3458 hypothetical protein; hypothetical protein complement(1301842..1302441) Shewanella sp. ANA-3 4476443 YP_868750.1 CDS Shewana3_1109 NC_008577.1 1302416 1305223 R part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA complement(1302416..1305223) Shewanella sp. ANA-3 4476444 YP_868751.1 CDS rumA NC_008577.1 1305325 1306674 D in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1305325..1306674 Shewanella sp. ANA-3 4476445 YP_868752.1 CDS Shewana3_1111 NC_008577.1 1306864 1309071 D TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; KEGG: son:SO3455 GTP pyrophosphokinase; (p)ppGpp synthetase I SpoT/RelA 1306864..1309071 Shewanella sp. ANA-3 4476446 YP_868753.1 CDS Shewana3_1112 NC_008577.1 1309586 1312291 D KEGG: cps:CPS_1809 putative protease; hypothetical protein 1309586..1312291 Shewanella sp. ANA-3 4476447 YP_868754.1 CDS Shewana3_1113 NC_008577.1 1312426 1312629 D hypothetical protein 1312426..1312629 Shewanella sp. ANA-3 4476448 YP_868755.1 CDS mazG NC_008577.1 1312902 1313780 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1312902..1313780 Shewanella sp. ANA-3 4476449 YP_868756.1 CDS pyrG NC_008577.1 1313897 1315537 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1313897..1315537 Shewanella sp. ANA-3 4476450 YP_868757.1 CDS eno NC_008577.1 1315751 1317046 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1315751..1317046 Shewanella sp. ANA-3 4476451 YP_868758.1 CDS Shewana3_1117 NC_008577.1 1317147 1317446 D PFAM: Septum formation initiator; KEGG: son:SO3439 cell division protein FtsB; cell division protein FtsB 1317147..1317446 Shewanella sp. ANA-3 4476452 YP_868759.1 CDS ispD NC_008577.1 1317457 1318206 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1317457..1318206 Shewanella sp. ANA-3 4476453 YP_868760.1 CDS ispF NC_008577.1 1318258 1318737 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 1318258..1318737 Shewanella sp. ANA-3 4476454 YP_868761.1 CDS Shewana3_1120 NC_008577.1 1318767 1319894 D PFAM: tRNA pseudouridine synthase D, TruD; KEGG: son:SO3436 tRNA pseudouridine synthase D; tRNA pseudouridine synthase D, TruD 1318767..1319894 Shewanella sp. ANA-3 4476455 YP_868762.1 CDS surE NC_008577.1 1319891 1320640 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1319891..1320640 Shewanella sp. ANA-3 4476456 YP_868763.1 CDS Shewana3_1122 NC_008577.1 1320637 1321272 D TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: son:SO3434 protein-L-isoaspartate O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1320637..1321272 Shewanella sp. ANA-3 4476457 YP_868764.1 CDS Shewana3_1123 NC_008577.1 1321357 1322253 D PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: son:SO3433 lipoprotein NlpD; peptidase M23B 1321357..1322253 Shewanella sp. ANA-3 4477828 YP_868765.1 CDS Shewana3_1124 NC_008577.1 1322334 1323314 D TIGRFAM: RNA polymerase sigma factor RpoS; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: son:SO3432 RNA polymerase sigma-38 factor; RNA polymerase, sigma 38 subunit, RpoS 1322334..1323314 Shewanella sp. ANA-3 4477829 YP_868766.1 CDS Shewana3_1125 NC_008577.1 1323429 1326014 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1323429..1326014) Shewanella sp. ANA-3 4477830 YP_868767.1 CDS recA NC_008577.1 1326397 1327470 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1326397..1327470 Shewanella sp. ANA-3 4477831 YP_868768.1 CDS Shewana3_1127 NC_008577.1 1327584 1327955 D PFAM: regulatory protein RecX; KEGG: son:SO3429 regulatory protein RecX; regulatory protein RecX 1327584..1327955 Shewanella sp. ANA-3 4477832 YP_868769.1 CDS alaS NC_008577.1 1328231 1330855 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1328231..1330855 Shewanella sp. ANA-3 4477833 YP_868770.1 CDS Shewana3_1129 NC_008577.1 1330865 1332121 D TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: son:SO3427 aspartokinase; aspartate kinase 1330865..1332121 Shewanella sp. ANA-3 4477834 YP_868771.1 CDS Shewana3_1130 NC_008577.1 1332240 1332437 D affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 1332240..1332437 Shewanella sp. ANA-3 4477835 YP_868772.1 CDS valS NC_008577.1 1334038 1336914 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1334038..1336914) Shewanella sp. ANA-3 4477844 YP_868773.1 CDS Shewana3_1132 NC_008577.1 1336930 1337394 R PFAM: DNA polymerase III chi subunit, HolC; KEGG: son:SO3423 DNA polymerase III, chi subunit; DNA polymerase III chi subunit, HolC complement(1336930..1337394) Shewanella sp. ANA-3 4477845 YP_868774.1 CDS Shewana3_1133 NC_008577.1 1338588 1338944 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3422 ribosomal subunit interface protein; 30S ribosomal protein S30 complement(1338588..1338944) Shewanella sp. ANA-3 4477846 YP_868775.1 CDS Shewana3_1134 NC_008577.1 1339242 1339931 D PFAM: cytochrome B561; KEGG: son:SO3421 b-type cytochrome, putative; cytochrome B561 1339242..1339931 Shewanella sp. ANA-3 4477847 YP_868776.1 CDS Shewana3_1135 NC_008577.1 1339997 1340446 R PFAM: cytochrome c, class II; KEGG: son:SO3420 cytochrome c'; cytochrome c, class II complement(1339997..1340446) Shewanella sp. ANA-3 4477848 YP_868777.1 CDS Shewana3_1136 NC_008577.1 1340636 1340911 D TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: son:SO3419 trp operon repressor; Trp operon repressor 1340636..1340911 Shewanella sp. ANA-3 4477849 YP_868778.1 CDS Shewana3_1137 NC_008577.1 1340942 1341319 R KEGG: son:SO3418 hypothetical protein; hypothetical protein complement(1340942..1341319) Shewanella sp. ANA-3 4477850 YP_868779.1 CDS Shewana3_1138 NC_008577.1 1341513 1342181 R PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO3417 peptidyl-prolyl cis-trans isomerase SlyD; peptidylprolyl isomerase, FKBP-type complement(1341513..1342181) Shewanella sp. ANA-3 4477851 YP_868780.1 CDS thrA NC_008577.1 1342824 1345292 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 1342824..1345292 Shewanella sp. ANA-3 4477852 YP_868781.1 CDS Shewana3_1140 NC_008577.1 1345289 1346227 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1345289..1346227 Shewanella sp. ANA-3 4477853 YP_868782.1 CDS Shewana3_1141 NC_008577.1 1346293 1347576 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1346293..1347576 Shewanella sp. ANA-3 4477854 YP_868783.1 CDS Shewana3_1142 NC_008577.1 1347843 1348136 D hypothetical protein 1347843..1348136 Shewanella sp. ANA-3 4477855 YP_868784.1 CDS Shewana3_1143 NC_008577.1 1348307 1349182 D PFAM: extracellular solute-binding protein, family 3; KEGG: son:SO3412 extracellular solute-binding proteins, family 3 protein; extracellular solute-binding protein 1348307..1349182 Shewanella sp. ANA-3 4477856 YP_868785.1 CDS Shewana3_1144 NC_008577.1 1349390 1352671 D PFAM: peptidase S41; WD40 domain protein beta Propeller; SMART: PDZ/DHR/GLGF domain protein; KEGG: son:SO3411 protease, putative; peptidase S41 1349390..1352671 Shewanella sp. ANA-3 4477857 YP_868786.1 CDS Shewana3_1145 NC_008577.1 1352778 1353200 R KEGG: son:SO3410 hypothetical protein; hypothetical protein complement(1352778..1353200) Shewanella sp. ANA-3 4477858 YP_868787.1 CDS Shewana3_1146 NC_008577.1 1353330 1353767 R PFAM: OsmC family protein; KEGG: son:SO3409 OsmC/Ohr family protein; OsmC family protein complement(1353330..1353767) Shewanella sp. ANA-3 4477859 YP_868788.1 CDS Shewana3_1147 NC_008577.1 1353867 1354217 R KEGG: son:SO3408 hypothetical protein; hypothetical protein complement(1353867..1354217) Shewanella sp. ANA-3 4477860 YP_868789.1 CDS Shewana3_1148 NC_008577.1 1354214 1355896 R PFAM: PepSY-associated TM helix domain protein; KEGG: son:SO3407 hypothetical protein; PepSY-associated TM helix domain-containing protein complement(1354214..1355896) Shewanella sp. ANA-3 4477861 YP_868790.1 CDS Shewana3_1149 NC_008577.1 1355898 1356266 R KEGG: son:SO3406 hypothetical protein; hypothetical protein complement(1355898..1356266) Shewanella sp. ANA-3 4477862 YP_868791.1 CDS Shewana3_1150 NC_008577.1 1356690 1358258 D KEGG: son:SO3404 methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1356690..1358258 Shewanella sp. ANA-3 4477863 YP_868792.1 CDS Shewana3_1151 NC_008577.1 1358491 1358847 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3403 ribosomal subunit interface protein; sigma 54 modulation protein/30S ribosomal protein S30 1358491..1358847 Shewanella sp. ANA-3 4477864 YP_868793.1 CDS Shewana3_1152 NC_008577.1 1358986 1359663 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: xcv:XCV1261 two-component system regulatory protein; two component LuxR family transcriptional regulator complement(1358986..1359663) Shewanella sp. ANA-3 4477865 YP_868794.1 CDS Shewana3_1153 NC_008577.1 1359708 1360868 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: xcb:XC_3118 two-component system sensor protein; putative signal transduction histidine kinase complement(1359708..1360868) Shewanella sp. ANA-3 4477866 YP_868795.1 CDS Shewana3_1154 NC_008577.1 1361248 1361793 D PFAM: isochorismatase hydrolase; KEGG: pfl:PFL_2630 isochorismatase family protein; isochorismatase hydrolase 1361248..1361793 Shewanella sp. ANA-3 4477867 YP_868796.1 CDS Shewana3_1155 NC_008577.1 1361849 1362571 R PFAM: protein of unknown function DUF28; KEGG: son:SO3401 hypothetical protein; hypothetical protein complement(1361849..1362571) Shewanella sp. ANA-3 4477868 YP_868797.1 CDS Shewana3_1156 NC_008577.1 1362962 1364533 D PFAM: chemotaxis sensory transducer; KEGG: cps:CPS_4961 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1362962..1364533 Shewanella sp. ANA-3 4477869 YP_868798.1 CDS Shewana3_1157 NC_008577.1 1364849 1365073 D KEGG: son:SO3395 hypothetical protein; hypothetical protein 1364849..1365073 Shewanella sp. ANA-3 4477870 YP_868799.1 CDS Shewana3_1158 NC_008577.1 1365177 1365758 R PFAM: regulatory protein, TetR; KEGG: son:SO3393 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1365177..1365758) Shewanella sp. ANA-3 4477871 YP_868800.1 CDS Shewana3_1159 NC_008577.1 1365887 1366954 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: son:SO3392 oxidoreductase, FMN-binding; NADH:flavin oxidoreductase 1365887..1366954 Shewanella sp. ANA-3 4477872 YP_868801.1 CDS Shewana3_1160 NC_008577.1 1367021 1369438 R KEGG: son:SO3391 ATP-dependent protease, putative; ATP-dependent protease complement(1367021..1369438) Shewanella sp. ANA-3 4477873 YP_868802.1 CDS Shewana3_1161 NC_008577.1 1369855 1372491 D KEGG: son:SO3389 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1369855..1372491 Shewanella sp. ANA-3 4477874 YP_868803.1 CDS Shewana3_1162 NC_008577.1 1372641 1373870 D PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO3388 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 1372641..1373870 Shewanella sp. ANA-3 4477875 YP_868804.1 CDS Shewana3_1163 NC_008577.1 1374139 1374648 R KEGG: son:SO3387 hypothetical protein; hypothetical protein complement(1374139..1374648) Shewanella sp. ANA-3 4477876 YP_868805.1 CDS Shewana3_1164 NC_008577.1 1374850 1375803 D PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: son:SO3386 hypothetical protein; hypothetical protein 1374850..1375803 Shewanella sp. ANA-3 4477877 YP_868806.1 CDS Shewana3_1165 NC_008577.1 1375876 1376934 D PFAM: regulatory protein, MerR; KEGG: son:SO3385 transcriptional regulator, MerR family; MerR family transcriptional regulator 1375876..1376934 Shewanella sp. ANA-3 4477878 YP_868807.1 CDS Shewana3_1166 NC_008577.1 1376924 1378405 D PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: son:SO3384 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase type I 1376924..1378405 Shewanella sp. ANA-3 4477879 YP_868808.1 CDS Shewana3_1167 NC_008577.1 1378451 1378897 D KEGG: son:SO3383 transcriptional regulator-related protein; transcriptional regulator-like protein 1378451..1378897 Shewanella sp. ANA-3 4478680 YP_868809.1 CDS Shewana3_1168 NC_008577.1 1378897 1379697 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO3382 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 1378897..1379697 Shewanella sp. ANA-3 4478681 YP_868810.1 CDS Shewana3_1169 NC_008577.1 1379694 1380944 D PFAM: amine oxidase; KEGG: son:SO3381 hypothetical protein; amine oxidase 1379694..1380944 Shewanella sp. ANA-3 4478682 YP_868811.1 CDS Shewana3_1170 NC_008577.1 1380941 1381735 D PFAM: protein of unknown function DUF1365; KEGG: son:SO3380 hypothetical protein; hypothetical protein 1380941..1381735 Shewanella sp. ANA-3 4478683 YP_868812.1 CDS Shewana3_1171 NC_008577.1 1381737 1382993 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO3379 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 1381737..1382993 Shewanella sp. ANA-3 4478684 YP_868813.1 CDS Shewana3_1172 NC_008577.1 1383006 1383551 D KEGG: son:SO3378 hypothetical protein; hypothetical protein 1383006..1383551 Shewanella sp. ANA-3 4478685 YP_868814.1 CDS Shewana3_1173 NC_008577.1 1383605 1384177 D KEGG: son:SO3377 hypothetical protein; hypothetical protein 1383605..1384177 Shewanella sp. ANA-3 4478686 YP_868815.1 CDS Shewana3_1174 NC_008577.1 1384165 1384713 D KEGG: son:SO3376 hypothetical protein; hypothetical protein 1384165..1384713 Shewanella sp. ANA-3 4478687 YP_868816.1 CDS Shewana3_1175 NC_008577.1 1384798 1385019 D KEGG: son:SO3374.1 hypothetical protein; hypothetical protein 1384798..1385019 Shewanella sp. ANA-3 4478688 YP_868817.1 CDS Shewana3_1176 NC_008577.1 1385114 1385458 R KEGG: son:SO3374 hypothetical protein; hypothetical protein complement(1385114..1385458) Shewanella sp. ANA-3 4478689 YP_868818.1 CDS Shewana3_1177 NC_008577.1 1385612 1385797 D hypothetical protein 1385612..1385797 Shewanella sp. ANA-3 4478690 YP_868819.1 CDS Shewana3_1178 NC_008577.1 1387037 1387588 D PFAM: cytochrome B561; KEGG: son:SO3371 hypothetical cytochrome B561; cytochrome B561 1387037..1387588 Shewanella sp. ANA-3 4478695 YP_868820.1 CDS Shewana3_1179 NC_008577.1 1387593 1388168 D PFAM: YceI family protein; KEGG: son:SO3370 hypothetical protein; hypothetical protein 1387593..1388168 Shewanella sp. ANA-3 4478696 YP_868821.1 CDS Shewana3_1180 NC_008577.1 1388253 1388531 R PFAM: Fe(II) trafficking protein YggX; KEGG: son:SO3369 hypothetical protein; hypothetical protein complement(1388253..1388531) Shewanella sp. ANA-3 4478697 YP_868822.1 CDS Shewana3_1181 NC_008577.1 1388541 1389659 R TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: son:SO3368 A/G-specific adenine glycosylase; A/G-specific DNA-adenine glycosylase complement(1388541..1389659) Shewanella sp. ANA-3 4478698 YP_868823.1 CDS trmB NC_008577.1 1389839 1390555 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1389839..1390555 Shewanella sp. ANA-3 4478699 YP_868824.1 CDS Shewana3_1183 NC_008577.1 1390601 1390927 D PFAM: protein of unknown function DUF469; KEGG: son:SO3366 hypothetical protein; hypothetical protein 1390601..1390927 Shewanella sp. ANA-3 4478700 YP_868825.1 CDS Shewana3_1184 NC_008577.1 1390927 1391841 D catalyzes the formation of glutamate from glutamine; glutaminase 1390927..1391841 Shewanella sp. ANA-3 4478701 YP_868826.1 CDS Shewana3_1185 NC_008577.1 1392020 1392841 D KEGG: son:SO3364 hypothetical protein; hypothetical protein 1392020..1392841 Shewanella sp. ANA-3 4478702 YP_868827.1 CDS Shewana3_1186 NC_008577.1 1393260 1394201 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3363 transcriptional regulator, LysR family; LysR family transcriptional regulator 1393260..1394201 Shewanella sp. ANA-3 4478703 YP_868828.1 CDS Shewana3_1187 NC_008577.1 1394824 1396671 R PFAM: protein of unknown function DUF885; KEGG: son:SO3361 hypothetical protein; hypothetical protein complement(1394824..1396671) Shewanella sp. ANA-3 4478704 YP_868829.1 CDS Shewana3_1188 NC_008577.1 1396824 1397981 R KEGG: son:SO3359 oxygen-independent coproporphyrinogen III oxidase, putative; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase complement(1396824..1397981) Shewanella sp. ANA-3 4478705 YP_868830.1 CDS Shewana3_1189 NC_008577.1 1397981 1398598 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase complement(1397981..1398598) Shewanella sp. ANA-3 4478706 YP_868831.1 CDS Shewana3_1190 NC_008577.1 1398768 1399202 R KEGG: son:SO3357 hypothetical protein; hypothetical protein complement(1398768..1399202) Shewanella sp. ANA-3 4478707 YP_868832.1 CDS Shewana3_1191 NC_008577.1 1399271 1399561 R TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF167; KEGG: son:SO3356 hypothetical protein; hypothetical protein complement(1399271..1399561) Shewanella sp. ANA-3 4478708 YP_868833.1 CDS Shewana3_1192 NC_008577.1 1399561 1400109 R PFAM: protein of unknown function YGGT; KEGG: son:SO3355 hypothetical protein; hypothetical protein complement(1399561..1400109) Shewanella sp. ANA-3 4478709 YP_868834.1 CDS Shewana3_1193 NC_008577.1 1400185 1401003 R TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: son:SO3354 pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase complement(1400185..1401003) Shewanella sp. ANA-3 4478710 YP_868835.1 CDS Shewana3_1194 NC_008577.1 1401225 1401941 R TIGRFAM: Protein of unknown function UPF0001; PFAM: alanine racemase domain protein; KEGG: son:SO3352 conserved hypothetical protein TIGR00044; hypothetical protein complement(1401225..1401941) Shewanella sp. ANA-3 4478711 YP_868836.1 CDS Shewana3_1195 NC_008577.1 1401977 1403014 D TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: son:SO3351 twitching motility protein PilT; pilus retraction ATPase PilT 1401977..1403014 Shewanella sp. ANA-3 4478712 YP_868837.1 CDS Shewana3_1196 NC_008577.1 1403024 1404136 D TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: son:SO3350 twitching motility protein PilU; twitching motility protein 1403024..1404136 Shewanella sp. ANA-3 4478713 YP_868838.1 CDS Shewana3_1197 NC_008577.1 1404235 1404846 D PFAM: glutathione peroxidase; KEGG: son:SO3349 glutathione peroxidase, putative; glutathione peroxidase 1404235..1404846 Shewanella sp. ANA-3 4478714 YP_868839.1 CDS Shewana3_1198 NC_008577.1 1404916 1405899 D PFAM: ferrochelatase; KEGG: son:SO3348 ferrochelatase; ferrochelatase 1404916..1405899 Shewanella sp. ANA-3 4479881 YP_868840.1 CDS Shewana3_1199 NC_008577.1 1405961 1406386 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(1405961..1406386) Shewanella sp. ANA-3 4479882 YP_868841.1 CDS Shewana3_1200 NC_008577.1 1406415 1406978 R PFAM: protein of unknown function DUF179; KEGG: son:SO3346 putative transcriptional regulator; hypothetical protein complement(1406415..1406978) Shewanella sp. ANA-3 4479883 YP_868842.1 CDS Shewana3_1201 NC_008577.1 1407047 1407376 R involved in start site selection during the initiation of translation; translation initiation factor Sui1 complement(1407047..1407376) Shewanella sp. ANA-3 4479884 YP_868843.1 CDS Shewana3_1202 NC_008577.1 1407526 1407840 R KEGG: son:SO3344 hypothetical protein; hypothetical protein complement(1407526..1407840) Shewanella sp. ANA-3 4477122 YP_868844.1 CDS Shewana3_1203 NC_008577.1 1408020 1408580 D KEGG: son:SO3343 hypothetical protein; hypothetical protein 1408020..1408580 Shewanella sp. ANA-3 4477123 YP_868845.1 CDS Shewana3_1204 NC_008577.1 1408934 1409575 D PFAM: protein of unknown function UPF0126; KEGG: son:SO3342 hypothetical protein; hypothetical protein 1408934..1409575 Shewanella sp. ANA-3 4477124 YP_868846.1 CDS Shewana3_1205 NC_008577.1 1409611 1410204 R PFAM: alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen; Redoxin domain protein; KEGG: son:SO3341 antioxidant, AhpC/TSA family; thiol peroxidase complement(1409611..1410204) Shewanella sp. ANA-3 4477125 YP_868847.1 CDS Shewana3_1206 NC_008577.1 1410316 1411143 R PFAM: MscS Mechanosensitive ion channel; KEGG: son:SO3340 hypothetical small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS complement(1410316..1411143) Shewanella sp. ANA-3 4477126 YP_868848.1 CDS Shewana3_1207 NC_008577.1 1411175 1411750 R PFAM: OmpA/MotB domain protein; KEGG: son:SO3339 OmpA family protein; OmpA/MotB domain-containing protein complement(1411175..1411750) Shewanella sp. ANA-3 4477127 YP_868849.1 CDS Shewana3_1208 NC_008577.1 1412053 1413066 D PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO3338 L-allo-threonine aldolase; L-threonine aldolase 1412053..1413066 Shewanella sp. ANA-3 4477128 YP_868850.1 CDS Shewana3_1209 NC_008577.1 1413231 1414697 D KEGG: son:SO3337 hypothetical protein; putative signal transduction protein 1413231..1414697 Shewanella sp. ANA-3 4477129 YP_868851.1 CDS Shewana3_1210 NC_008577.1 1414699 1415238 R KEGG: son:SO3336 hypothetical protein; hypothetical protein complement(1414699..1415238) Shewanella sp. ANA-3 4477130 YP_868852.1 CDS Shewana3_1211 NC_008577.1 1415301 1416125 R PFAM: protein of unknown function DUF980; KEGG: son:SO3335 hypothetical protein; hypothetical protein complement(1415301..1416125) Shewanella sp. ANA-3 4477131 YP_868853.1 CDS Shewana3_1212 NC_008577.1 1416229 1417965 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3334 GGDEF family protein; diguanylate cyclase complement(1416229..1417965) Shewanella sp. ANA-3 4477132 YP_868854.1 CDS Shewana3_1213 NC_008577.1 1417962 1419455 R PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO3333 transporter, putative; extracellular solute-binding protein complement(1417962..1419455) Shewanella sp. ANA-3 4477133 YP_868855.1 CDS Shewana3_1214 NC_008577.1 1419592 1420074 R KEGG: son:SO3332 transcriptional regulator, CopG family; CopG family transcriptional regulator complement(1419592..1420074) Shewanella sp. ANA-3 4477134 YP_868856.1 CDS Shewana3_1215 NC_008577.1 1420034 1420816 R KEGG: son:SO3331 hypothetical protein; hypothetical protein complement(1420034..1420816) Shewanella sp. ANA-3 4477135 YP_868857.1 CDS Shewana3_1216 NC_008577.1 1421348 1421806 D KEGG: son:SO3328 acetyltransferase, GNAT family; acetyltransferase 1421348..1421806 Shewanella sp. ANA-3 4477136 YP_868858.1 CDS Shewana3_1217 NC_008577.1 1422018 1422227 D KEGG: son:SO3326 hypothetical protein; hypothetical protein 1422018..1422227 Shewanella sp. ANA-3 4477137 YP_868859.1 CDS Shewana3_1218 NC_008577.1 1422355 1422657 D KEGG: son:SO3325 NrfJ-related protein; NrfJ-like protein 1422355..1422657 Shewanella sp. ANA-3 4477138 YP_868860.1 CDS Shewana3_1219 NC_008577.1 1422825 1423346 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO3324 acetyltransferase, GNAT family; acetyltransferase 1422825..1423346 Shewanella sp. ANA-3 4477139 YP_868861.1 CDS Shewana3_1220 NC_008577.1 1423410 1423940 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO3323 acetyltransferase, GNAT family; acetyltransferase 1423410..1423940 Shewanella sp. ANA-3 4477140 YP_868862.1 CDS Shewana3_1221 NC_008577.1 1424035 1424730 R PFAM: Pirin domain protein domain protein; Cupin 2, conserved barrel domain protein; KEGG: vpa:VPA0042 hypothetical protein; pirin domain-containing protein complement(1424035..1424730) Shewanella sp. ANA-3 4477141 YP_868863.1 CDS Shewana3_1222 NC_008577.1 1424741 1425184 R PFAM: DoxX family protein; KEGG: son:SO3319 hypothetical protein; DoxX family protein complement(1424741..1425184) Shewanella sp. ANA-3 4477142 YP_868864.1 CDS Shewana3_1223 NC_008577.1 1425280 1426242 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO3318 transcriptional regulator, LysR family; LysR family transcriptional regulator 1425280..1426242 Shewanella sp. ANA-3 4477143 YP_868865.1 CDS Shewana3_1224 NC_008577.1 1426364 1428115 R PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: son:SO3317 5'-nucleotidase, putative; metallophosphoesterase complement(1426364..1428115) Shewanella sp. ANA-3 4477144 YP_868866.1 CDS Shewana3_1225 NC_008577.1 1428213 1429304 R PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: son:SO3316 hypothetical protein; hypothetical protein complement(1428213..1429304) Shewanella sp. ANA-3 4477145 YP_868867.1 CDS Shewana3_1226 NC_008577.1 1429449 1430570 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1429449..1430570 Shewanella sp. ANA-3 4477146 YP_868868.1 CDS Shewana3_1227 NC_008577.1 1430603 1431391 D KEGG: son:SO3314 fimbrial biogenesis and twitching motility protein, putative; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1430603..1431391 Shewanella sp. ANA-3 4477147 YP_868869.1 CDS Shewana3_1228 NC_008577.1 1431388 1432515 D KEGG: son:SO3313 hypothetical protein; hypothetical protein 1431388..1432515 Shewanella sp. ANA-3 4477148 YP_868870.1 CDS ispG NC_008577.1 1432558 1433673 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1432558..1433673 Shewanella sp. ANA-3 4477149 YP_868871.1 CDS hisS NC_008577.1 1433833 1435110 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1433833..1435110 Shewanella sp. ANA-3 4477150 YP_868872.1 CDS Shewana3_1231 NC_008577.1 1435123 1435743 D KEGG: son:SO3310 hypothetical protein; hypothetical protein 1435123..1435743 Shewanella sp. ANA-3 4477151 YP_868873.1 CDS Shewana3_1232 NC_008577.1 1435755 1436942 D with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 1435755..1436942 Shewanella sp. ANA-3 4477152 YP_868874.1 CDS engA NC_008577.1 1437022 1438488 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1437022..1438488 Shewanella sp. ANA-3 4477153 YP_868875.1 CDS xseA NC_008577.1 1438638 1439984 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1438638..1439984) Shewanella sp. ANA-3 4477154 YP_868876.1 CDS Shewana3_1235 NC_008577.1 1440107 1441573 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1440107..1441573 Shewanella sp. ANA-3 4477155 YP_868877.1 CDS guaA NC_008577.1 1441691 1443268 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1441691..1443268 Shewanella sp. ANA-3 4477156 YP_868878.1 CDS Shewana3_1237 NC_008577.1 1443631 1447431 D KEGG: mba:Mbar_A2621 hypothetical protein; hypothetical protein 1443631..1447431 Shewanella sp. ANA-3 4477157 YP_868879.1 CDS Shewana3_1238 NC_008577.1 1447605 1448273 D PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: son:SO3291 cytidine/deoxycytidylate deaminase family protein; tRNA-adenosine deaminase 1447605..1448273 Shewanella sp. ANA-3 4477158 YP_868880.1 CDS Shewana3_1239 NC_008577.1 1448713 1450149 R YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase complement(1448713..1450149) Shewanella sp. ANA-3 4477159 YP_868881.1 CDS Shewana3_1240 NC_008577.1 1450429 1454310 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1450429..1454310 Shewanella sp. ANA-3 4477160 YP_868882.1 CDS Shewana3_1241 NC_008577.1 1455552 1457108 D PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: son:SO3286 cytochrome bd-I oxidase subunit I; cytochrome bd ubiquinol oxidase subunit I 1455552..1457108 Shewanella sp. ANA-3 4477161 YP_868883.1 CDS Shewana3_1242 NC_008577.1 1457124 1458263 D TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: son:SO3285 cytochrome bd-I oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 1457124..1458263 Shewanella sp. ANA-3 4477162 YP_868884.1 CDS Shewana3_1243 NC_008577.1 1458282 1458398 D TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: vch:VC1842 hypothetical protein; cyd operon protein YbgT 1458282..1458398 Shewanella sp. ANA-3 4477163 YP_868885.1 CDS Shewana3_1244 NC_008577.1 1458630 1459829 D PFAM: phage integrase family protein; KEGG: rso:RSc2622 probable integrase protein; phage integrase family protein 1458630..1459829 Shewanella sp. ANA-3 4477164 YP_868886.1 CDS Shewana3_1245 NC_008577.1 1459990 1460373 D PFAM: protein of unknown function DUF1044; KEGG: rru:Rru_A0922 protein of unknown function DUF1044; hypothetical protein 1459990..1460373 Shewanella sp. ANA-3 4477165 YP_868887.1 CDS Shewana3_1246 NC_008577.1 1460354 1460659 D KEGG: rru:Rru_A0921 DNA-binding protein; transcriptional regulator-like protein 1460354..1460659 Shewanella sp. ANA-3 4477166 YP_868888.1 CDS Shewana3_1247 NC_008577.1 1460685 1461503 D TIGRFAM: conserved hypothetical protein; KEGG: vpa:VP1853 putative protein Ymh; hypothetical protein 1460685..1461503 Shewanella sp. ANA-3 4477167 YP_868889.1 CDS Shewana3_1248 NC_008577.1 1461517 1462800 D KEGG: eba:ebA6585 hypothetical protein; hypothetical protein 1461517..1462800 Shewanella sp. ANA-3 4477168 YP_868890.1 CDS Shewana3_1249 NC_008577.1 1462966 1463565 R KEGG: bur:Bcep18194_A5718 ATPase-like; ATPase-like protein complement(1462966..1463565) Shewanella sp. ANA-3 4477169 YP_868891.1 CDS Shewana3_1250 NC_008577.1 1463938 1465479 D PFAM: Integrase, catalytic region; KEGG: pst:PSPTO2841 ISPsy14, transposase; integrase catalytic subunit 1463938..1465479 Shewanella sp. ANA-3 4477170 YP_868892.1 CDS Shewana3_1251 NC_008577.1 1465494 1466249 D PFAM: IstB domain protein ATP-binding protein; KEGG: sth:STH2702 transposase subunit; IstB ATP binding domain-containing protein 1465494..1466249 Shewanella sp. ANA-3 4477171 YP_868893.1 CDS Shewana3_1252 NC_008577.1 1466554 1467063 D PFAM: DNA repair protein RadC; KEGG: rso:RSc2620 hypothetical protein; DNA repair protein RadC 1466554..1467063 Shewanella sp. ANA-3 4477172 YP_868894.1 CDS Shewana3_1253 NC_008577.1 1467107 1467916 R hypothetical protein complement(1467107..1467916) Shewanella sp. ANA-3 4477173 YP_868895.1 CDS Shewana3_1254 NC_008577.1 1468067 1471351 R KEGG: xcc:XCC3133 DNA helicase related protein; DNA helicase-like protein complement(1468067..1471351) Shewanella sp. ANA-3 4479828 YP_868896.1 CDS Shewana3_1255 NC_008577.1 1471427 1473172 R hypothetical protein complement(1471427..1473172) Shewanella sp. ANA-3 4479829 YP_868897.1 CDS Shewana3_1256 NC_008577.1 1473237 1474130 R KEGG: neu:NE2517 hypothetical protein; hypothetical protein complement(1473237..1474130) Shewanella sp. ANA-3 4479830 YP_868898.1 CDS Shewana3_1257 NC_008577.1 1474143 1475105 R PFAM: Patatin; KEGG: neu:NE2518 patatin; patatin complement(1474143..1475105) Shewanella sp. ANA-3 4479831 YP_868899.1 CDS Shewana3_1258 NC_008577.1 1475102 1475392 R PFAM: helix-turn-helix domain protein; KEGG: rso:RSc2610 putative transcription regulator protein; XRE family transcriptional regulator complement(1475102..1475392) Shewanella sp. ANA-3 4479832 YP_868900.1 CDS Shewana3_1259 NC_008577.1 1475678 1476007 D KEGG: rso:RSc2609 probable lipoprotein; putative lipoprotein 1475678..1476007 Shewanella sp. ANA-3 4479833 YP_868901.1 CDS Shewana3_1261 NC_008577.1 1476330 1477127 D KEGG: zmo:ZMO1936 hypothetical protein; hypothetical protein 1476330..1477127 Shewanella sp. ANA-3 4479835 YP_868902.1 CDS Shewana3_1262 NC_008577.1 1477211 1477495 D KEGG: zmo:ZMO1937 hypothetical protein; hypothetical protein 1477211..1477495 Shewanella sp. ANA-3 4479836 YP_868903.1 CDS Shewana3_1263 NC_008577.1 1477522 1478379 D KEGG: rso:RSc2606 hypothetical replication initiator and transcription repressor protein; putative replication initiator and transcription repressor protein 1477522..1478379 Shewanella sp. ANA-3 4479837 YP_868904.1 CDS Shewana3_1264 NC_008577.1 1478666 1479304 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rso:RSc2605 putative partition protein; cobyrinic acid a,c-diamide synthase 1478666..1479304 Shewanella sp. ANA-3 4479838 YP_868905.1 CDS Shewana3_1265 NC_008577.1 1479301 1479552 D KEGG: rso:RSc2604 hypothetical/unknown protein; hypothetical protein 1479301..1479552 Shewanella sp. ANA-3 4479839 YP_868906.1 CDS Shewana3_1266 NC_008577.1 1479549 1480082 D KEGG: rso:RSc2603 hypothetical/unknown protein; hypothetical protein 1479549..1480082 Shewanella sp. ANA-3 4479840 YP_868907.1 CDS Shewana3_1267 NC_008577.1 1480079 1480666 D KEGG: rso:RSc2602 probable conjugal transfer TRAF transmembrane protein; TraF peptidase 1480079..1480666 Shewanella sp. ANA-3 4479841 YP_868908.1 CDS Shewana3_1268 NC_008577.1 1481079 1483052 D KEGG: rso:RSc2601 hypothetical/unknown protein; hypothetical protein 1481079..1483052 Shewanella sp. ANA-3 4479842 YP_868909.1 CDS Shewana3_1269 NC_008577.1 1483049 1483843 R SMART: helix-turn-helix domain protein; KEGG: ilo:IL1607 predicted DNA-binding protein, possible transcriptional regulator; XRE family transcriptional regulator complement(1483049..1483843) Shewanella sp. ANA-3 4479843 YP_868910.1 CDS Shewana3_1270 NC_008577.1 1483912 1485396 D PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA1808 probable transporter; major facilitator superfamily transporter 1483912..1485396 Shewanella sp. ANA-3 4479844 YP_868911.1 CDS Shewana3_1271 NC_008577.1 1485411 1485686 D PFAM: regulatory protein, LysR; KEGG: rso:RSc2588 probable transcription regulator protein; LysR family transcriptional regulator 1485411..1485686 Shewanella sp. ANA-3 4479845 YP_868912.1 CDS Shewana3_1272 NC_008577.1 1485693 1485914 D KEGG: ppu:PP3180 Smp-30/Cgr1 family protein; hypothetical protein 1485693..1485914 Shewanella sp. ANA-3 4479846 YP_868913.1 CDS Shewana3_1273 NC_008577.1 1485995 1486189 D KEGG: ppu:PP3180 Smp-30/Cgr1 family protein; Smp-30/Cgr1 family protein 1485995..1486189 Shewanella sp. ANA-3 4479847 YP_868914.1 CDS Shewana3_1274 NC_008577.1 1486226 1486606 D KEGG: ppu:PP3180 Smp-30/Cgr1 family protein; Smp-30/Cgr1 family protein 1486226..1486606 Shewanella sp. ANA-3 4479848 YP_868915.1 CDS Shewana3_1275 NC_008577.1 1486964 1487641 D PFAM: regulatory proteins, IclR; KEGG: ppr:PBPRB1669 hypothetical transcriptional regulator; IclR family transcriptional regulator 1486964..1487641 Shewanella sp. ANA-3 4479849 YP_868916.1 CDS Shewana3_1276 NC_008577.1 1487726 1488133 D PFAM: protein of unknown function DUF336; KEGG: ppr:PBPRB1668 hypothetical protein; hypothetical protein 1487726..1488133 Shewanella sp. ANA-3 4479850 YP_868917.1 CDS Shewana3_1277 NC_008577.1 1488130 1489353 D PFAM: major facilitator superfamily MFS_1; KEGG: cvi:CV0700 probable multidrug/chloramphenicol efflux transporter; major facilitator superfamily transporter 1488130..1489353 Shewanella sp. ANA-3 4479851 YP_868918.1 CDS Shewana3_1278 NC_008577.1 1489643 1490584 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rso:RSc2588 probable transcription regulator protein; LysR family transcriptional regulator 1489643..1490584 Shewanella sp. ANA-3 4479852 YP_868919.1 CDS Shewana3_1279 NC_008577.1 1490581 1490844 D KEGG: rso:RSc2587 probable lipoprotein; putative lipoprotein 1490581..1490844 Shewanella sp. ANA-3 4479853 YP_868920.1 CDS Shewana3_1280 NC_008577.1 1491078 1493075 D type IV secretion VirD4 coupling protein family; conjugal transfer coupling protein TraG 1491078..1493075 Shewanella sp. ANA-3 4479854 YP_868921.1 CDS Shewana3_1281 NC_008577.1 1493072 1493536 D PFAM: CopG domain protein DNA-binding domain protein; KEGG: rso:RSc2585 hypothetical/unknown protein; CopG/DNA-binding domain-containing protein 1493072..1493536 Shewanella sp. ANA-3 4479855 YP_868922.1 CDS Shewana3_1282 NC_008577.1 1493533 1494603 D PFAM: type II secretion system protein E; KEGG: rso:RSc2584 probable conjugal transfer protein TrbB; type II secretion system protein E 1493533..1494603 Shewanella sp. ANA-3 4479856 YP_868923.1 CDS Shewana3_1283 NC_008577.1 1494600 1494986 D PFAM: Conjugal transfer protein TrbC; KEGG: rso:RSc2583 probable conjugal transfer trbC transmembrane protein; conjugal transfer protein TrbC 1494600..1494986 Shewanella sp. ANA-3 4479857 YP_868924.1 CDS Shewana3_1284 NC_008577.1 1494983 1495252 D KEGG: rso:RSc2582 probable conjugal transfer trbD transmembrane protein; putative conjugal transfer trbD transmembrane protein 1494983..1495252 Shewanella sp. ANA-3 4479858 YP_868925.1 CDS Shewana3_1285 NC_008577.1 1495263 1497713 D type IV secretion system VirB4 family; conjugal transfer ATPase TrbE 1495263..1497713 Shewanella sp. ANA-3 4479859 YP_868926.1 CDS Shewana3_1286 NC_008577.1 1497710 1498453 D KEGG: rso:RSc2580 probable conjugal transfer TrbJ signal peptide protein; conjugal transfer protein TrbJ 1497710..1498453 Shewanella sp. ANA-3 4479860 YP_868927.1 CDS Shewana3_1287 NC_008577.1 1498466 1498783 D KEGG: rso:RSc2579 probable lipoprotein; putative lipoprotein 1498466..1498783 Shewanella sp. ANA-3 4479861 YP_868928.1 CDS Shewana3_1288 NC_008577.1 1498780 1500162 D type IV secretion VirB6 family; conjugal transfer protein TrbL 1498780..1500162 Shewanella sp. ANA-3 4479862 YP_868929.1 CDS Shewana3_1289 NC_008577.1 1500181 1500885 D PFAM: Conjugal transfer protein; KEGG: rso:RSc2577 probable conjugal transfer trbF transmembrane protein; conjugal transfer protein TrbF 1500181..1500885 Shewanella sp. ANA-3 4479863 YP_868930.1 CDS Shewana3_1290 NC_008577.1 1500882 1501874 D PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: rso:RSc2576 probable conjugal transfer lipoprotein TrbG; conjugal transfer protein TrbG/VirB9/CagX 1500882..1501874 Shewanella sp. ANA-3 4479864 YP_868931.1 CDS Shewana3_1291 NC_008577.1 1501877 1503157 D PFAM: conjugation TrbI family protein; KEGG: rso:RSc2575 probable conjugal transfer trbi transmembrane protein; conjugation TrbI family protein 1501877..1503157 Shewanella sp. ANA-3 4479865 YP_868932.1 CDS Shewana3_1292 NC_008577.1 1503154 1503399 D KEGG: rso:RSc2574 hypothetical/unknown protein; hypothetical protein 1503154..1503399 Shewanella sp. ANA-3 4479866 YP_868933.1 CDS Shewana3_1293 NC_008577.1 1504135 1506138 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3282 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(1504135..1506138) Shewanella sp. ANA-3 4479867 YP_868934.1 CDS Shewana3_1294 NC_008577.1 1506398 1506643 D PFAM: protein of unknown function DUF465; KEGG: son:SO3280 hypothetical protein; hypothetical protein 1506398..1506643 Shewanella sp. ANA-3 4479868 YP_868935.1 CDS Shewana3_1295 NC_008577.1 1506628 1509708 R PFAM: acriflavin resistance protein; KEGG: son:SO3279 AcrB/AcrD/AcrF family protein; acriflavin resistance protein complement(1506628..1509708) Shewanella sp. ANA-3 4479869 YP_868936.1 CDS Shewana3_1296 NC_008577.1 1509711 1510832 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3278 hypothetical protein; RND family efflux transporter MFP subunit complement(1509711..1510832) Shewanella sp. ANA-3 4479870 YP_868937.1 CDS Shewana3_1297 NC_008577.1 1510970 1511590 D PFAM: regulatory protein, TetR; KEGG: son:SO3277 transcriptional regulator, TetR family; TetR family transcriptional regulator 1510970..1511590 Shewanella sp. ANA-3 4479871 YP_868938.1 CDS Shewana3_1298 NC_008577.1 1511704 1512651 D KEGG: son:SO3276 hypothetical protein; hypothetical protein 1511704..1512651 Shewanella sp. ANA-3 4479872 YP_868939.1 CDS Shewana3_1299 NC_008577.1 1512652 1513212 R KEGG: son:SO3275 hypothetical protein; hypothetical protein complement(1512652..1513212) Shewanella sp. ANA-3 4479873 YP_868940.1 CDS Shewana3_1300 NC_008577.1 1513458 1513937 R KEGG: son:SO3274 hypothetical protein; hypothetical protein complement(1513458..1513937) Shewanella sp. ANA-3 4479874 YP_868941.1 CDS Shewana3_1301 NC_008577.1 1514043 1516514 R KEGG: son:SO3273 hypothetical protein; hypothetical protein complement(1514043..1516514) Shewanella sp. ANA-3 4479875 YP_868942.1 CDS Shewana3_1302 NC_008577.1 1516864 1517859 D KEGG: son:SO3271 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 1516864..1517859 Shewanella sp. ANA-3 4479876 YP_868943.1 CDS Shewana3_1303 NC_008577.1 1517856 1518998 D KEGG: son:SO3270 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 1517856..1518998 Shewanella sp. ANA-3 4479877 YP_868944.1 CDS Shewana3_1304 NC_008577.1 1519014 1520066 R KEGG: cps:CPS_2097 NeuB protein; N-acetylneuraminate synthase complement(1519014..1520066) Shewanella sp. ANA-3 4479878 YP_868945.1 CDS Shewana3_1305 NC_008577.1 1520128 1520940 R KEGG: mpa:MAP3160 hypothetical protein; hypothetical protein complement(1520128..1520940) Shewanella sp. ANA-3 4479879 YP_868946.1 CDS Shewana3_1306 NC_008577.1 1520942 1521835 R KEGG: son:SO3267 hypothetical protein; hypothetical protein complement(1520942..1521835) Shewanella sp. ANA-3 4479880 YP_868947.1 CDS Shewana3_1307 NC_008577.1 1521838 1522539 R KEGG: ccr:CC2858 hypothetical protein; hypothetical protein complement(1521838..1522539) Shewanella sp. ANA-3 4478820 YP_868948.1 CDS Shewana3_1308 NC_008577.1 1522536 1524113 R PFAM: GCN5-related N-acetyltransferase; KEGG: par:Psyc_0657 probable polysaccharide biosynthesis protein; N-acetyltransferase GCN5 complement(1522536..1524113) Shewanella sp. ANA-3 4478821 YP_868949.1 CDS Shewana3_1309 NC_008577.1 1524119 1524835 R PFAM: acylneuraminate cytidylyltransferase; KEGG: mhu:Mhun_3094 acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase complement(1524119..1524835) Shewanella sp. ANA-3 4478822 YP_868950.1 CDS Shewana3_1310 NC_008577.1 1524872 1525150 R KEGG: son:SO3260 hypothetical protein; hypothetical protein complement(1524872..1525150) Shewanella sp. ANA-3 4478823 YP_868951.1 CDS Shewana3_1311 NC_008577.1 1525147 1526442 R KEGG: son:SO3259 hypothetical protein; hypothetical protein complement(1525147..1526442) Shewanella sp. ANA-3 4478824 YP_868952.1 CDS Shewana3_1312 NC_008577.1 1526652 1526849 R hypothetical protein complement(1526652..1526849) Shewanella sp. ANA-3 4478825 YP_868953.1 CDS Shewana3_1313 NC_008577.1 1528145 1529311 R KEGG: son:SO3258 hypothetical protein; hypothetical protein complement(1528145..1529311) Shewanella sp. ANA-3 4478827 YP_868954.1 CDS Shewana3_1314 NC_008577.1 1529551 1530183 D KEGG: son:SO3257 hypothetical protein; hypothetical protein 1529551..1530183 Shewanella sp. ANA-3 4478828 YP_868955.1 CDS Shewana3_1315 NC_008577.1 1530180 1530629 D PFAM: protein of unknown function DUF400; KEGG: son:SO3256 hypothetical protein; hypothetical protein 1530180..1530629 Shewanella sp. ANA-3 4478829 YP_868956.1 CDS Shewana3_1316 NC_008577.1 1530732 1531157 R PFAM: FlgN family protein; KEGG: son:SO3255 flagellar biosynthetic protein FlgN; FlgN family protein complement(1530732..1531157) Shewanella sp. ANA-3 4478830 YP_868957.1 CDS Shewana3_1317 NC_008577.1 1531160 1531486 R PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: son:SO3254 negative regulator of flagellin synthesis FlgM; anti-sigma-28 factor FlgM complement(1531160..1531486) Shewanella sp. ANA-3 4478831 YP_868958.1 CDS flgA NC_008577.1 1531562 1532269 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(1531562..1532269) Shewanella sp. ANA-3 4478832 YP_868959.1 CDS Shewana3_1319 NC_008577.1 1532475 1533395 D SMART: response regulator receiver; CheW domain protein; KEGG: son:SO3252 chemotaxis protein CheV; response regulator receiver modulated CheW protein 1532475..1533395 Shewanella sp. ANA-3 4478833 YP_868960.1 CDS Shewana3_1320 NC_008577.1 1533497 1534336 D SMART: MCP methyltransferase, CheR-type; KEGG: son:SO3251 chemotaxis protein methyltransferase CheR; chemotaxis protein CheR 1533497..1534336 Shewanella sp. ANA-3 4478834 YP_868961.1 CDS flgB NC_008577.1 1534481 1534885 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 1534481..1534885 Shewanella sp. ANA-3 4478835 YP_868962.1 CDS flgC NC_008577.1 1534888 1535304 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1534888..1535304 Shewanella sp. ANA-3 4478836 YP_868963.1 CDS flgD NC_008577.1 1535329 1536108 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1535329..1536108 Shewanella sp. ANA-3 4478837 YP_868964.1 CDS flgE NC_008577.1 1536178 1537539 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1536178..1537539 Shewanella sp. ANA-3 4478838 YP_868965.2 CDS flgF NC_008577.1 1537711 1538454 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1537711..1538454 Shewanella sp. ANA-3 4478839 YP_868966.1 CDS flgG NC_008577.1 1538465 1539253 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1538465..1539253 Shewanella sp. ANA-3 4478840 YP_868967.1 CDS flgH NC_008577.1 1539266 1539940 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 1539266..1539940 Shewanella sp. ANA-3 4478841 YP_868968.1 CDS flgI NC_008577.1 1539952 1541043 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1539952..1541043 Shewanella sp. ANA-3 4478842 YP_868969.1 CDS flgJ NC_008577.1 1541061 1542230 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1541061..1542230 Shewanella sp. ANA-3 4478843 YP_868970.1 CDS Shewana3_1330 NC_008577.1 1542271 1544196 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: son:SO3239.3 hypothetical flagellar hook-associated protein; flagellar hook-associated protein FlgK 1542271..1544196 Shewanella sp. ANA-3 4478844 YP_868971.1 CDS flgL NC_008577.1 1544208 1545419 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.; flagellar hook-associated protein FlgL 1544208..1545419 Shewanella sp. ANA-3 4478845 YP_868972.1 CDS Shewana3_1332 NC_008577.1 1545522 1546343 D PFAM: flagellin domain protein; KEGG: son:SO3238 flagellin; flagellin domain-containing protein 1545522..1546343 Shewanella sp. ANA-3 4478846 YP_868973.1 CDS Shewana3_1333 NC_008577.1 1546601 1547413 D PFAM: flagellin domain protein; KEGG: son:SO3237 flagellin; flagellin domain-containing protein 1546601..1547413 Shewanella sp. ANA-3 4478847 YP_868974.1 CDS Shewana3_1334 NC_008577.1 1547544 1547930 D PFAM: flagellar protein FlaG protein; KEGG: son:SO3236 flagellin FlaG; flagellar protein FlaG protein 1547544..1547930 Shewanella sp. ANA-3 4478848 YP_868975.1 CDS Shewana3_1335 NC_008577.1 1547975 1549345 D PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: son:SO3235 flagellar hook-associated protein FliD; flagellar hook-associated 2 domain-containing protein 1547975..1549345 Shewanella sp. ANA-3 4478849 YP_868976.1 CDS Shewana3_1336 NC_008577.1 1549364 1549693 D KEGG: son:SO3234 hypothetical protein; hypothetical protein 1549364..1549693 Shewanella sp. ANA-3 4478850 YP_868977.1 CDS fliS NC_008577.1 1549700 1550113 D flagellin specific chaperone; flagellar protein FliS 1549700..1550113 Shewanella sp. ANA-3 4478851 YP_868978.1 CDS Shewana3_1338 NC_008577.1 1550400 1551833 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; flagellar regulatory FleQ domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO3232 flagellar regulatory protein A; sigma-54 dependent trancsriptional regulator 1550400..1551833 Shewanella sp. ANA-3 4478852 YP_868979.1 CDS Shewana3_1339 NC_008577.1 1551942 1553024 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: son:SO3231 flagellar regulatory protein B; PAS/PAC sensor signal transduction histidine kinase 1551942..1553024 Shewanella sp. ANA-3 4478853 YP_868980.1 CDS Shewana3_1340 NC_008577.1 1553017 1554357 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: son:SO3230 flagellar regulatory protein C; two component, sigma54 specific, Fis family transcriptional regulator 1553017..1554357 Shewanella sp. ANA-3 4478854 YP_868981.1 CDS Shewana3_1341 NC_008577.1 1554533 1554871 D TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: son:SO3229 flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE 1554533..1554871 Shewanella sp. ANA-3 4479474 YP_868982.1 CDS fliF NC_008577.1 1554916 1556601 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1554916..1556601 Shewanella sp. ANA-3 4479475 YP_868983.1 CDS fliG NC_008577.1 1556594 1557640 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1556594..1557640 Shewanella sp. ANA-3 4479476 YP_868984.1 CDS fliH NC_008577.1 1557627 1558589 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1557627..1558589 Shewanella sp. ANA-3 4479477 YP_868985.1 CDS fliI NC_008577.1 1558558 1559895 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1558558..1559895 Shewanella sp. ANA-3 4479478 YP_868986.1 CDS Shewana3_1346 NC_008577.1 1559907 1560353 D TIGRFAM: flagellar export protein FliJ; KEGG: son:SO3224 flagellar protein FliJ; flagellar export protein FliJ 1559907..1560353 Shewanella sp. ANA-3 4479479 YP_868987.1 CDS Shewana3_1347 NC_008577.1 1560513 1562252 D PFAM: flagellar hook-length control protein; KEGG: son:SO3223 flagellar hook-length control protein FliK; flagellar hook-length control protein 1560513..1562252 Shewanella sp. ANA-3 4479480 YP_868988.1 CDS fliL NC_008577.1 1562335 1562859 D interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1562335..1562859 Shewanella sp. ANA-3 4479481 YP_868989.1 CDS fliM NC_008577.1 1562900 1563931 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1562900..1563931 Shewanella sp. ANA-3 4479482 YP_868990.1 CDS fliN NC_008577.1 1563944 1564318 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1563944..1564318 Shewanella sp. ANA-3 4479483 YP_868991.1 CDS Shewana3_1351 NC_008577.1 1564352 1564759 D PFAM: flagellar biosynthesis protein, FliO; KEGG: son:SO3219 flagellar protein FliO; flagellar biosynthesis protein, FliO 1564352..1564759 Shewanella sp. ANA-3 4479484 YP_868992.1 CDS fliP NC_008577.1 1564756 1565502 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1564756..1565502 Shewanella sp. ANA-3 4479485 YP_868993.1 CDS Shewana3_1353 NC_008577.1 1565520 1565789 D TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: son:SO3217 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 1565520..1565789 Shewanella sp. ANA-3 4479486 YP_868994.1 CDS fliR NC_008577.1 1565794 1566591 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1565794..1566591 Shewanella sp. ANA-3 4479487 YP_868995.1 CDS flhB NC_008577.1 1566609 1567739 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1566609..1567739 Shewanella sp. ANA-3 4479488 YP_868996.1 CDS flhA NC_008577.1 1567858 1569957 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1567858..1569957 Shewanella sp. ANA-3 4479489 YP_868997.1 CDS flhF NC_008577.1 1569969 1571345 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1569969..1571345 Shewanella sp. ANA-3 4479490 YP_868998.1 CDS Shewana3_1358 NC_008577.1 1571350 1572231 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO3211 flagellar biosynthetic protein FlhG; cobyrinic acid a,c-diamide synthase 1571350..1572231 Shewanella sp. ANA-3 4479491 YP_868999.1 CDS fliA NC_008577.1 1572224 1572937 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1572224..1572937 Shewanella sp. ANA-3 4479492 YP_869000.1 CDS Shewana3_1360 NC_008577.1 1572985 1573368 D PFAM: response regulator receiver; KEGG: son:SO3209 chemotaxis protein CheY; response regulator receiver protein 1572985..1573368 Shewanella sp. ANA-3 4479493 YP_869001.1 CDS Shewana3_1361 NC_008577.1 1573382 1574119 D PFAM: Chemotaxis phosphatase, CheZ; KEGG: son:SO3208 chemotaxis protein CheZ; chemotaxis phosphatase, CheZ 1573382..1574119 Shewanella sp. ANA-3 4479494 YP_869002.1 CDS Shewana3_1362 NC_008577.1 1574135 1576423 D PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: son:SO3207 chemotaxis protein; CheA signal transduction histidine kinase 1574135..1576423 Shewanella sp. ANA-3 4479495 YP_869003.1 CDS Shewana3_1363 NC_008577.1 1576442 1577566 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1576442..1577566 Shewanella sp. ANA-3 4479496 YP_869004.1 CDS Shewana3_1364 NC_008577.1 1577559 1578095 D KEGG: son:SO3205 hypothetical protein; hypothetical protein 1577559..1578095 Shewanella sp. ANA-3 4478272 YP_869005.1 CDS Shewana3_1365 NC_008577.1 1578160 1578951 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO3204 ParA family protein; cobyrinic acid a,c-diamide synthase 1578160..1578951 Shewanella sp. ANA-3 4478273 YP_869006.1 CDS Shewana3_1366 NC_008577.1 1578935 1579942 D PFAM: CheW domain protein; KEGG: son:SO3203 CheW domain protein; CheW protein 1578935..1579942 Shewanella sp. ANA-3 4478274 YP_869007.1 CDS Shewana3_1367 NC_008577.1 1579950 1580444 D PFAM: CheW domain protein; KEGG: son:SO3202 purine-binding chemotaxis protein CheW; CheW protein 1579950..1580444 Shewanella sp. ANA-3 4478275 YP_869008.1 CDS Shewana3_1368 NC_008577.1 1580599 1580997 D KEGG: son:SO3200 hypothetical protein; hypothetical protein 1580599..1580997 Shewanella sp. ANA-3 4478276 YP_869009.1 CDS Shewana3_1369 NC_008577.1 1581025 1581336 R KEGG: son:SO3199 FlhB domain protein; FlhB domain-containing protein complement(1581025..1581336) Shewanella sp. ANA-3 4478277 YP_869010.1 CDS Shewana3_1370 NC_008577.1 1581349 1583400 R KEGG: son:SO3198 hypothetical protein; hypothetical protein complement(1581349..1583400) Shewanella sp. ANA-3 4478278 YP_869011.1 CDS Shewana3_1371 NC_008577.1 1583622 1584407 D PFAM: VacJ family lipoprotein; KEGG: son:SO3197 vacJ lipoprotein, putative; VacJ family lipoprotein 1583622..1584407 Shewanella sp. ANA-3 4478279 YP_869012.1 CDS Shewana3_1372 NC_008577.1 1584530 1585633 D PFAM: response regulator receiver; KEGG: son:SO3196 response regulator; response regulator receiver protein 1584530..1585633 Shewanella sp. ANA-3 4478280 YP_869013.1 CDS Shewana3_1373 NC_008577.1 1585825 1587294 R TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: ppr:PBPRA2644 putative dipeptide/Tripeptide permease; amino acid/peptide transporter complement(1585825..1587294) Shewanella sp. ANA-3 4478281 YP_869014.1 CDS Shewana3_1374 NC_008577.1 1587769 1588269 D KEGG: son:SO3194 transcriptional activator rfaH, putative; TIGRFAM: transcriptional activator RfaH; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; transcription antitermination protein nusG 1587769..1588269 Shewanella sp. ANA-3 4478282 YP_869015.1 CDS Shewana3_1375 NC_008577.1 1588920 1591433 D PFAM: polysaccharide export protein; KEGG: son:SO3193 polysaccharide biosynthesis protein; polysaccharide export protein 1588920..1591433 Shewanella sp. ANA-3 4478283 YP_869016.1 CDS Shewana3_1376 NC_008577.1 1591674 1592630 D PFAM: lipopolysaccharide biosynthesis; KEGG: son:SO3191 chain length determinant protein; lipopolysaccharide biosynthesis protein 1591674..1592630 Shewanella sp. ANA-3 4478284 YP_869017.1 CDS Shewana3_1377 NC_008577.1 1592670 1593659 D PFAM: sugar transferase; KEGG: ava:Ava_1046 sugar transferase; sugar transferase 1592670..1593659 Shewanella sp. ANA-3 4478285 YP_869018.1 CDS Shewana3_1378 NC_008577.1 1593660 1594409 D PFAM: glycosyl transferase, family 2; KEGG: pca:Pcar_1796 teichuronic acid biosynthesis; glycosyl transferase family protein 1593660..1594409 Shewanella sp. ANA-3 4478286 YP_869019.1 CDS Shewana3_1379 NC_008577.1 1594422 1595501 D NAD(P) binding; catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose; dTDP-glucose-4,6-dehydratase 1594422..1595501 Shewanella sp. ANA-3 4478287 YP_869020.1 CDS Shewana3_1380 NC_008577.1 1595572 1596432 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: vfi:VF0167 Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1595572..1596432 Shewanella sp. ANA-3 4478288 YP_869021.1 CDS Shewana3_1381 NC_008577.1 1596531 1597406 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: dps:DP2222 probable dTDP-4-rhamnose reductase; dTDP-4-dehydrorhamnose reductase 1596531..1597406 Shewanella sp. ANA-3 4478978 YP_869022.1 CDS Shewana3_1382 NC_008577.1 1597487 1598038 D TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: vvy:VV0303 dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase; dTDP-4-dehydrorhamnose 3,5-epimerase 1597487..1598038 Shewanella sp. ANA-3 4478979 YP_869023.1 CDS Shewana3_1383 NC_008577.1 1598156 1599400 D KEGG: vpa:VP0228 putative integral membrane protein; hypothetical protein 1598156..1599400 Shewanella sp. ANA-3 4478980 YP_869024.1 CDS Shewana3_1384 NC_008577.1 1599495 1600250 D hypothetical protein 1599495..1600250 Shewanella sp. ANA-3 4478981 YP_869025.1 CDS Shewana3_1385 NC_008577.1 1600280 1600924 D hypothetical protein 1600280..1600924 Shewanella sp. ANA-3 4478982 YP_869026.1 CDS Shewana3_1386 NC_008577.1 1600921 1601691 D PFAM: glycosyl transferase, family 11; KEGG: pmm:PMM0353 glycosyl transferase family 11; glycosyl transferase family protein 1600921..1601691 Shewanella sp. ANA-3 4478983 YP_869027.1 CDS Shewana3_1387 NC_008577.1 1601734 1602900 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: vpa:VP0236 nucleotide sugar dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase 1601734..1602900 Shewanella sp. ANA-3 4478984 YP_869028.1 CDS Shewana3_1388 NC_008577.1 1603063 1603824 R PFAM: protein of unknown function DUF886; KEGG: son:SO3164 hypothetical protein; hypothetical protein complement(1603063..1603824) Shewanella sp. ANA-3 4478985 YP_869029.1 CDS Shewana3_1389 NC_008577.1 1603920 1604426 R KEGG: son:SO3163 lipoprotein; lipoprotein complement(1603920..1604426) Shewanella sp. ANA-3 4478986 YP_869030.1 CDS Shewana3_1390 NC_008577.1 1604737 1606098 D PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; KEGG: son:SO3162 sensor histidine kinase; GAF sensor signal transduction histidine kinase 1604737..1606098 Shewanella sp. ANA-3 4478987 YP_869031.1 CDS Shewana3_1391 NC_008577.1 1606171 1607109 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: eba:ebA2277 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1606171..1607109 Shewanella sp. ANA-3 4478988 YP_869032.1 CDS Shewana3_1392 NC_008577.1 1607096 1607632 D TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: son:SO3160 dTDP-4-dehydrorhamnose 3,5-epimerase; dTDP-4-dehydrorhamnose 3,5-epimerase 1607096..1607632 Shewanella sp. ANA-3 4478989 YP_869033.1 CDS Shewana3_1393 NC_008577.1 1607657 1610032 R PFAM: protein of unknown function DUF940, membrane lipoprotein putative; KEGG: son:SO3159 hypothetical protein; hypothetical protein complement(1607657..1610032) Shewanella sp. ANA-3 4478990 YP_869034.1 CDS Shewana3_1394 NC_008577.1 1610032 1610820 R PFAM: protein of unknown function DUF1017; KEGG: son:SO3158 polysaccharide synthesis-related protein; hypothetical protein complement(1610032..1610820) Shewanella sp. ANA-3 4478991 YP_869035.1 CDS Shewana3_1395 NC_008577.1 1610831 1611541 R KEGG: son:SO3157 lipoprotein, putative; putative lipoprotein complement(1610831..1611541) Shewanella sp. ANA-3 4478992 YP_869036.1 CDS Shewana3_1396 NC_008577.1 1611693 1611941 R KEGG: son:SO3156.1 hypothetical protein; hypothetical protein complement(1611693..1611941) Shewanella sp. ANA-3 4478993 YP_869037.1 CDS Shewana3_1397 NC_008577.1 1612213 1613337 R PFAM: Patatin; KEGG: son:SO3155 hypothetical protein; patatin complement(1612213..1613337) Shewanella sp. ANA-3 4478994 YP_869038.1 CDS Shewana3_1398 NC_008577.1 1613601 1615313 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(1613601..1615313) Shewanella sp. ANA-3 4478995 YP_869039.1 CDS Shewana3_1399 NC_008577.1 1615512 1616141 R PFAM: transferase hexapeptide repeat containing protein; KEGG: son:SO3152 acetyltransferase, CysE/LacA/LpxA/NodL family; hexapaptide repeat-containing transferase complement(1615512..1616141) Shewanella sp. ANA-3 4478996 YP_869040.1 CDS Shewana3_1400 NC_008577.1 1616142 1616876 R PFAM: protein of unknown function UPF0066; KEGG: son:SO3151 hypothetical protein; hypothetical protein complement(1616142..1616876) Shewanella sp. ANA-3 4478997 YP_869041.1 CDS Shewana3_1401 NC_008577.1 1616971 1617351 R KEGG: son:SO3150 lipoprotein, putative; putative lipoprotein complement(1616971..1617351) Shewanella sp. ANA-3 4478998 YP_869042.1 CDS Shewana3_1402 NC_008577.1 1617429 1618718 R KEGG: son:SO3149 hypothetical protein; hypothetical protein complement(1617429..1618718) Shewanella sp. ANA-3 4478999 YP_869043.1 CDS Shewana3_1403 NC_008577.1 1618718 1621792 R PFAM: amidohydrolase; KEGG: ilo:IL1717 secreted enzyme, contains two amidohydrolase related domains; amidohydrolase complement(1618718..1621792) Shewanella sp. ANA-3 4479000 YP_869044.1 CDS Shewana3_1404 NC_008577.1 1621992 1622384 R PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: son:SO3146 DNA-binding protein, H-NS family; histone family protein nucleoid-structuring protein H-NS complement(1621992..1622384) Shewanella sp. ANA-3 4479001 YP_869045.1 CDS Shewana3_1405 NC_008577.1 1622695 1623444 D PFAM: electron transfer flavoprotein beta-subunit; KEGG: son:SO3145 electron transfer flavoprotein, beta subunit; electron transfer flavoprotein subunit beta 1622695..1623444 Shewanella sp. ANA-3 4479002 YP_869046.1 CDS Shewana3_1406 NC_008577.1 1623445 1624371 D PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: son:SO3144 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 1623445..1624371 Shewanella sp. ANA-3 4479003 YP_869047.1 CDS Shewana3_1407 NC_008577.1 1624743 1626311 D PFAM: Na+/H+ antiporter NhaC; KEGG: vfi:VF1630 Na(+)/H(+) antiporter; Na+/H+ antiporter NhaC 1624743..1626311 Shewanella sp. ANA-3 4479004 YP_869048.1 CDS Shewana3_1408 NC_008577.1 1626427 1628577 R PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO3142 peptidyl-dipeptidase Dcp; peptidyl-dipeptidase Dcp complement(1626427..1628577) Shewanella sp. ANA-3 4479005 YP_869049.1 CDS Shewana3_1409 NC_008577.1 1628749 1630839 R KEGG: son:SO3140.2 hypothetical protein; hypothetical protein complement(1628749..1630839) Shewanella sp. ANA-3 4479006 YP_869050.1 CDS Shewana3_1410 NC_008577.1 1631379 1631957 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1631379..1631957 Shewanella sp. ANA-3 4479007 YP_869051.1 CDS Shewana3_1411 NC_008577.1 1632245 1635316 D KEGG: psb:Psyr_3925 hypothetical protein; hypothetical protein 1632245..1635316 Shewanella sp. ANA-3 4479008 YP_869052.1 CDS Shewana3_1412 NC_008577.1 1635442 1636821 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO3138 C4-dicarboxylate transport transcriptional regulatory protein; two component, sigma54 specific, Fis family transcriptional regulator complement(1635442..1636821) Shewanella sp. ANA-3 4479009 YP_869053.1 CDS Shewana3_1413 NC_008577.1 1636818 1638629 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO3136.1 hypothetical two-component sensor histidine kinase protein; ATPase domain-containing protein complement(1636818..1638629) Shewanella sp. ANA-3 4479010 YP_869054.1 CDS Shewana3_1414 NC_008577.1 1638728 1640125 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: son:SO3136 C4-dicarboxylate transport protein; TRAP dicarboxylate transporter subunit DctM complement(1638728..1640125) Shewanella sp. ANA-3 4479011 YP_869055.1 CDS Shewana3_1415 NC_008577.1 1640125 1640769 R PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: son:SO3135 C4-dicarboxylate transporter, putative; tripartite ATP-independent periplasmic transporter DctQ complement(1640125..1640769) Shewanella sp. ANA-3 4479012 YP_869056.1 CDS Shewana3_1416 NC_008577.1 1640832 1641854 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: son:SO3134 C4-dicarboxylate-binding periplasmic protein; TRAP dicarboxylate transporter subunit DctP complement(1640832..1641854) Shewanella sp. ANA-3 4479013 YP_869057.1 CDS Shewana3_1417 NC_008577.1 1642249 1642479 R KEGG: son:SO3132 hypothetical protein; hypothetical protein complement(1642249..1642479) Shewanella sp. ANA-3 4479014 YP_869058.1 CDS gltX NC_008577.1 1643838 1645247 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1643838..1645247 Shewanella sp. ANA-3 4479021 YP_869059.1 CDS Shewana3_1419 NC_008577.1 1647370 1649199 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3128 ABC transporter, ATP-binding/permease protein, putative; ABC transporter-like protein complement(1647370..1649199) Shewanella sp. ANA-3 4479636 YP_869060.1 CDS Shewana3_1420 NC_008577.1 1649381 1651009 D PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; KEGG: son:SO3127 Ada regulatory protein, putative; transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II 1649381..1651009 Shewanella sp. ANA-3 4479637 YP_869061.1 CDS Shewana3_1421 NC_008577.1 1651138 1651704 D TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: son:SO3126 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 1651138..1651704 Shewanella sp. ANA-3 4479638 YP_869062.1 CDS Shewana3_1422 NC_008577.1 1651742 1653025 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO3125 ATP-dependent RNA helicase, DEAD box family; 4a-hydroxytetrahydrobiopterin dehydratase 1651742..1653025 Shewanella sp. ANA-3 4479639 YP_869063.1 CDS Shewana3_1423 NC_008577.1 1653091 1653561 D PFAM: Dual specificity protein phosphatase; KEGG: son:SO3124 tyrosine-specific protein phosphatase, putative; Dual specificity protein phosphatase 1653091..1653561 Shewanella sp. ANA-3 4479640 YP_869064.1 CDS Shewana3_1424 NC_008577.1 1653596 1655230 D PFAM: phospholipase D/Transphosphatidylase; KEGG: vvy:VV1159 hypothetical protein; phospholipase D/transphosphatidylase 1653596..1655230 Shewanella sp. ANA-3 4479641 YP_869065.1 CDS Shewana3_1425 NC_008577.1 1655322 1656221 D PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO3123 chemotaxis protein CheV; response regulator receiver modulated CheW protein 1655322..1656221 Shewanella sp. ANA-3 4479642 YP_869066.1 CDS Shewana3_1426 NC_008577.1 1656394 1657620 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 1656394..1657620 Shewanella sp. ANA-3 4479643 YP_869067.1 CDS Shewana3_1427 NC_008577.1 1657697 1658221 D KEGG: son:SO3121 hypothetical protein; hypothetical protein 1657697..1658221 Shewanella sp. ANA-3 4479644 YP_869068.1 CDS Shewana3_1428 NC_008577.1 1658274 1659653 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: oxidoreductase domain protein; KEGG: son:SO3120 oxidoreductase, Gfo/Idh/MocA family; oxidoreductase domain-containing protein complement(1658274..1659653) Shewanella sp. ANA-3 4479645 YP_869069.1 CDS Shewana3_1429 NC_008577.1 1659990 1660424 D KEGG: son:SO3119 hypothetical protein; hypothetical protein 1659990..1660424 Shewanella sp. ANA-3 4479646 YP_869070.1 CDS Shewana3_1430 NC_008577.1 1660536 1661207 R PFAM: pseudouridine synthase; KEGG: hch:HCH_04661 pseudouridylate synthases, 23S RNA-specific; pseudouridine synthase complement(1660536..1661207) Shewanella sp. ANA-3 4479647 YP_869071.1 CDS Shewana3_1431 NC_008577.1 1661321 1661875 R PFAM: Redoxin domain protein; KEGG: son:SO3117 thioredoxin, putative; redoxin domain-containing protein complement(1661321..1661875) Shewanella sp. ANA-3 4479648 YP_869072.1 CDS Shewana3_1432 NC_008577.1 1662021 1662647 R KEGG: son:SO3116 hypothetical protein; hypothetical protein complement(1662021..1662647) Shewanella sp. ANA-3 4479649 YP_869073.1 CDS Shewana3_1433 NC_008577.1 1662830 1663033 D KEGG: son:SO3115 hypothetical protein; hypothetical protein 1662830..1663033 Shewanella sp. ANA-3 4479650 YP_869074.1 CDS queA NC_008577.1 1663098 1664135 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1663098..1664135 Shewanella sp. ANA-3 4479651 YP_869075.1 CDS tgt NC_008577.1 1664297 1665421 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1664297..1665421 Shewanella sp. ANA-3 4479652 YP_869076.1 CDS Shewana3_1436 NC_008577.1 1665505 1665780 D TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: son:SO3112 preprotein translocase, YajC subunit; protein translocase subunit yajC 1665505..1665780 Shewanella sp. ANA-3 4479653 YP_869077.1 CDS secD NC_008577.1 1665798 1667648 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1665798..1667648 Shewanella sp. ANA-3 4479654 YP_869078.1 CDS secF NC_008577.1 1667661 1668608 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1667661..1668608 Shewanella sp. ANA-3 4479655 YP_869079.1 CDS Shewana3_1439 NC_008577.1 1668865 1669182 D KEGG: son:SO3109 hypothetical protein; hypothetical protein 1668865..1669182 Shewanella sp. ANA-3 4479656 YP_869080.1 CDS Shewana3_1440 NC_008577.1 1669452 1669811 D PFAM: Rhodanese domain protein; KEGG: cya:CYA_1705 rhodanese domain protein; rhodanese domain-containing protein 1669452..1669811 Shewanella sp. ANA-3 4479657 YP_869081.1 CDS Shewana3_1441 NC_008577.1 1669846 1670757 D TIGRFAM: siroheme synthase; KEGG: son:SO3108 precorrin-2 oxidase/ferrochelatase; siroheme synthase 1669846..1670757 Shewanella sp. ANA-3 4479658 YP_869082.1 CDS Shewana3_1442 NC_008577.1 1670844 1671389 D PFAM: YaeQ family protein; KEGG: son:SO3107 hypothetical protein; YaeQ family protein 1670844..1671389 Shewanella sp. ANA-3 4479659 YP_869083.1 CDS Shewana3_1443 NC_008577.1 1671430 1673859 R PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Proprotein convertase, P; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9, subtilisin propeptide; KEGG: son:SO3106 cold-active serine alkaline protease; peptidase S8/S53 subtilisin kexin sedolisin complement(1671430..1673859) Shewanella sp. ANA-3 4479660 YP_869084.1 CDS Shewana3_1444 NC_008577.1 1674444 1674842 R PFAM: Rhodanese domain protein; KEGG: son:SO3105 phage shock protein E; rhodanese domain-containing protein complement(1674444..1674842) Shewanella sp. ANA-3 4479661 YP_869085.1 CDS Shewana3_1445 NC_008577.1 1674868 1675080 R KEGG: son:SO3104 hypothetical protein; hypothetical protein complement(1674868..1675080) Shewanella sp. ANA-3 4479662 YP_869086.1 CDS Shewana3_1446 NC_008577.1 1675139 1678369 R PFAM: acriflavin resistance protein; KEGG: son:SO3103 AcrB/AcrD/AcrF family protein; acriflavin resistance protein complement(1675139..1678369) Shewanella sp. ANA-3 4479663 YP_869087.1 CDS Shewana3_1447 NC_008577.1 1678404 1679417 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3102 AcrA/AcrE family protein; RND family efflux transporter MFP subunit complement(1678404..1679417) Shewanella sp. ANA-3 4479664 YP_869088.1 CDS Shewana3_1448 NC_008577.1 1679600 1680352 R PFAM: protein of unknown function DUF541; KEGG: son:SO3101 hypothetical protein; hypothetical protein complement(1679600..1680352) Shewanella sp. ANA-3 4479665 YP_869089.1 CDS Shewana3_1449 NC_008577.1 1680474 1680860 R KEGG: son:SO3100 hypothetical protein; hypothetical protein complement(1680474..1680860) Shewanella sp. ANA-3 4479666 YP_869090.1 CDS Shewana3_1450 NC_008577.1 1680961 1682247 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: son:SO3099 long-chain fatty acid transport protein, putative; aromatic hydrocarbon degradation membrane protein complement(1680961..1682247) Shewanella sp. ANA-3 4479667 YP_869091.1 CDS Shewana3_1451 NC_008577.1 1682588 1684039 R TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: bha:BH0660 sodium/proline symporter; sodium/proline symporter complement(1682588..1684039) Shewanella sp. ANA-3 4479668 YP_869092.1 CDS Shewana3_1452 NC_008577.1 1684198 1684902 R KEGG: son:SO3097 hypothetical protein; hypothetical protein complement(1684198..1684902) Shewanella sp. ANA-3 4479669 YP_869093.1 CDS Shewana3_1453 NC_008577.1 1684895 1685458 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(1684895..1685458) Shewanella sp. ANA-3 4479670 YP_869094.1 CDS Shewana3_1454 NC_008577.1 1685552 1687213 R KEGG: son:SO3095 hypothetical protein; hypothetical protein complement(1685552..1687213) Shewanella sp. ANA-3 4479671 YP_869095.1 CDS Shewana3_1455 NC_008577.1 1687207 1689279 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: von Willebrand factor, type A; Tetratricopeptide domain protein; KEGG: son:SO3094 TPR domain protein; hypothetical protein complement(1687207..1689279) Shewanella sp. ANA-3 4479672 YP_869096.1 CDS Shewana3_1456 NC_008577.1 1689279 1690295 R PFAM: von Willebrand factor, type A; KEGG: son:SO3093 von Willebrand factor type A domain protein; von Willebrand factor type A domain-containing protein complement(1689279..1690295) Shewanella sp. ANA-3 4479673 YP_869097.1 CDS Shewana3_1457 NC_008577.1 1690289 1690882 R KEGG: son:SO3092 hypothetical protein; hypothetical protein complement(1690289..1690882) Shewanella sp. ANA-3 4479674 YP_869098.1 CDS Shewana3_1458 NC_008577.1 1690946 1691914 R PFAM: protein of unknown function DUF58; KEGG: son:SO3091 hypothetical protein; hypothetical protein complement(1690946..1691914) Shewanella sp. ANA-3 4479675 YP_869099.1 CDS Shewana3_1459 NC_008577.1 1691987 1692943 R PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: son:SO3090 MoxR domain protein; ATPase complement(1691987..1692943) Shewanella sp. ANA-3 4479676 YP_869100.1 CDS fadI NC_008577.1 1693217 1694527 D FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 1693217..1694527 Shewanella sp. ANA-3 4479677 YP_869101.1 CDS fadJ NC_008577.1 1694533 1696662 D multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 1694533..1696662 Shewanella sp. ANA-3 4479678 YP_869102.1 CDS Shewana3_1462 NC_008577.1 1696925 1697134 D KEGG: son:SO3087 hypothetical protein; hypothetical protein 1696925..1697134 Shewanella sp. ANA-3 4479679 YP_869103.1 CDS Shewana3_1463 NC_008577.1 1697409 1697996 R KEGG: son:SO3085 hypothetical protein; hypothetical protein complement(1697409..1697996) Shewanella sp. ANA-3 4479680 YP_869104.1 CDS Shewana3_1464 NC_008577.1 1698103 1702404 R KEGG: son:SO3084 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(1698103..1702404) Shewanella sp. ANA-3 4479681 YP_869105.1 CDS Shewana3_1465 NC_008577.1 1702658 1705447 R PFAM: peptidase M16 domain protein; KEGG: son:SO3083 peptidase, M16 family; peptidase M16 domain-containing protein complement(1702658..1705447) Shewanella sp. ANA-3 4479682 YP_869106.1 CDS Shewana3_1466 NC_008577.1 1705617 1706087 D TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: son:SO3082 phosphohistidine phosphatase SixA; phosphohistidine phosphatase, SixA 1705617..1706087 Shewanella sp. ANA-3 4479683 YP_869107.1 CDS Shewana3_1467 NC_008577.1 1706153 1706683 R PFAM: Smr protein/MutS2; KEGG: son:SO3081 Smr domain protein; hypothetical protein complement(1706153..1706683) Shewanella sp. ANA-3 4479684 YP_869108.1 CDS Shewana3_1468 NC_008577.1 1706764 1707708 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1706764..1707708 Shewanella sp. ANA-3 4479685 YP_869109.1 CDS Shewana3_1469 NC_008577.1 1707823 1708917 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1707823..1708917 Shewanella sp. ANA-3 4479686 YP_869110.1 CDS Shewana3_1470 NC_008577.1 1708987 1710156 D PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: son:SO3078 major facilitator family protein, putative; major facilitator superfamily transporter 1708987..1710156 Shewanella sp. ANA-3 4479687 YP_869111.1 CDS Shewana3_1471 NC_008577.1 1710221 1711363 D PFAM: ATP-NAD/AcoX kinase; KEGG: son:SO3077 hypothetical protein; ATP-NAD/AcoX kinase 1710221..1711363 Shewanella sp. ANA-3 4478108 YP_869112.1 CDS Shewana3_1472 NC_008577.1 1711419 1711700 D KEGG: son:SO3076 hypothetical protein; hypothetical protein 1711419..1711700 Shewanella sp. ANA-3 4478109 YP_869113.1 CDS Shewana3_1473 NC_008577.1 1711704 1712312 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO3075 RNA methyltransferase, TrmH family, putative; tRNA/rRNA methyltransferase SpoU 1711704..1712312 Shewanella sp. ANA-3 4478110 YP_869114.1 CDS Shewana3_1474 NC_008577.1 1712516 1714438 R PFAM: FAD dependent oxidoreductase; KEGG: son:SO3073 hypothetical protein; FAD dependent oxidoreductase complement(1712516..1714438) Shewanella sp. ANA-3 4478111 YP_869115.1 CDS Shewana3_1475 NC_008577.1 1714724 1715959 D PFAM: beta-ketoacyl synthase; KEGG: son:SO3072 3-oxoacyl-(acyl-carrier-protein) synthase I; 3-oxoacyl-ACP synthase 1714724..1715959 Shewanella sp. ANA-3 4478112 YP_869116.1 CDS Shewana3_1476 NC_008577.1 1716390 1717520 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO3071 erythronate-4-phosphate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase catalytic subunit 1716390..1717520 Shewanella sp. ANA-3 4478113 YP_869117.1 CDS Shewana3_1477 NC_008577.1 1717523 1718539 D TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; KEGG: son:SO3070 aspartate semialdehyde dehydrogenese; aspartate semialdehyde dehydrogenase 1717523..1718539 Shewanella sp. ANA-3 4478114 YP_869118.1 CDS Shewana3_1478 NC_008577.1 1718719 1722066 D KEGG: son:SO3069 putative membrane protein; hypothetical protein 1718719..1722066 Shewanella sp. ANA-3 4478115 YP_869119.1 CDS truA NC_008577.1 1722170 1722955 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1722170..1722955 Shewanella sp. ANA-3 4478116 YP_869120.1 CDS Shewana3_1480 NC_008577.1 1723007 1724305 D TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO3067 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/dihydrofolate synthase 1723007..1724305 Shewanella sp. ANA-3 4478117 YP_869121.1 CDS Shewana3_1481 NC_008577.1 1724298 1725122 D PFAM: Sporulation domain protein; KEGG: son:SO3066 DedD protein; sporulation domain-containing protein 1724298..1725122 Shewanella sp. ANA-3 4478118 YP_869122.1 CDS Shewana3_1482 NC_008577.1 1725233 1725721 D PFAM: Colicin V production protein; KEGG: son:SO3065 colicin V production protein; colicin V production protein 1725233..1725721 Shewanella sp. ANA-3 4478119 YP_869123.1 CDS Shewana3_1483 NC_008577.1 1725902 1727416 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1725902..1727416 Shewanella sp. ANA-3 4478120 YP_869124.1 CDS Shewana3_1484 NC_008577.1 1727544 1729028 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: son:SO3063 sodium:alanine symporter family protein; amino acid carrier protein complement(1727544..1729028) Shewanella sp. ANA-3 4478121 YP_869125.1 CDS Shewana3_1485 NC_008577.1 1729393 1729680 R KEGG: son:SO3062 hypothetical protein; hypothetical protein complement(1729393..1729680) Shewanella sp. ANA-3 4478122 YP_869126.1 CDS Shewana3_1486 NC_008577.1 1729880 1731994 D decatenates replicating daughter chromosomes; DNA topoisomerase III 1729880..1731994 Shewanella sp. ANA-3 4478123 YP_869127.1 CDS Shewana3_1487 NC_008577.1 1732244 1733413 D PFAM: porin, Gram-negative type; KEGG: son:SO3060 outer membrane porin, putative; porin 1732244..1733413 Shewanella sp. ANA-3 4478124 YP_869128.1 CDS Shewana3_1488 NC_008577.1 1733503 1735029 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO3059 formate hydrogenlyase transcriptional activator, putative; sigma-54 dependent trancsriptional regulator complement(1733503..1735029) Shewanella sp. ANA-3 4478125 YP_869129.1 CDS Shewana3_1489 NC_008577.1 1735195 1736748 D TIGRFAM: flavocytochrome c; PFAM: monooxygenase, FAD-binding; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: son:SO3058 flavocytochrome c flavin subunit, putative; flavocytochrome c 1735195..1736748 Shewanella sp. ANA-3 4478126 YP_869130.1 CDS Shewana3_1490 NC_008577.1 1736785 1738422 D PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO3057 Pal/histidase family protein; phenylalanine/histidine ammonia-lyase 1736785..1738422 Shewanella sp. ANA-3 4478127 YP_869131.1 CDS Shewana3_1491 NC_008577.1 1738464 1738847 D KEGG: son:SO3056 tetraheme cytochrome c; tetraheme cytochrome c 1738464..1738847 Shewanella sp. ANA-3 4478128 YP_869132.1 CDS Shewana3_1492 NC_008577.1 1739069 1740358 R PFAM: alpha/beta hydrolase fold; KEGG: son:SO3055 proline iminopeptidase; prolyl aminopeptidase 2 complement(1739069..1740358) Shewanella sp. ANA-3 4478129 YP_869133.1 CDS Shewana3_1493 NC_008577.1 1740538 1741182 D PFAM: beta-lactamase domain protein; KEGG: son:SO3054 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 1740538..1741182 Shewanella sp. ANA-3 4478130 YP_869134.1 CDS Shewana3_1494 NC_008577.1 1741408 1742421 D PFAM: protein of unknown function DUF182; KEGG: son:SO3051 hypothetical xanthine dehydrogenase accessory factor; hypothetical protein 1741408..1742421 Shewanella sp. ANA-3 4478131 YP_869135.1 CDS Shewana3_1495 NC_008577.1 1742421 1743125 D KEGG: son:SO3050 hypothetical protein; hypothetical protein 1742421..1743125 Shewanella sp. ANA-3 4478132 YP_869136.1 CDS Shewana3_1496 NC_008577.1 1743129 1743626 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: son:SO3049 isoquinoline 1-oxidoreductase, alpha subunit, putative; 2Fe-2S iron-sulfur cluster binding domain-containing protein 1743129..1743626 Shewanella sp. ANA-3 4478133 YP_869137.1 CDS Shewana3_1497 NC_008577.1 1743628 1745874 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: son:SO3048 isoquinoline 1-oxidoreductase, beta subunit, putative; aldehyde oxidase and xanthine dehydrogenase 1743628..1745874 Shewanella sp. ANA-3 4478134 YP_869138.1 CDS Shewana3_1498 NC_008577.1 1746245 1746736 D PFAM: protein of unknown function DUF1097; KEGG: son:SO3047 hypothetical protein; hypothetical protein 1746245..1746736 Shewanella sp. ANA-3 4478135 YP_869139.1 CDS Shewana3_1499 NC_008577.1 1746851 1748305 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: vpa:VPA0842 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1746851..1748305 Shewanella sp. ANA-3 4478136 YP_869140.1 CDS Shewana3_1500 NC_008577.1 1748713 1749120 D KEGG: son:SO3045 hypothetical protein; hypothetical protein 1748713..1749120 Shewanella sp. ANA-3 4478137 YP_869141.1 CDS Shewana3_1501 NC_008577.1 1749333 1749875 D PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA3191 putative acetyltransferase; N-acetyltransferase GCN5 1749333..1749875 Shewanella sp. ANA-3 4478138 YP_869142.1 CDS Shewana3_1502 NC_008577.1 1750004 1750435 D KEGG: reu:Reut_B4688 hypothetical protein; hypothetical protein 1750004..1750435 Shewanella sp. ANA-3 4478139 YP_869143.1 CDS Shewana3_1503 NC_008577.1 1750675 1751487 R removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III complement(1750675..1751487) Shewanella sp. ANA-3 4478140 YP_869144.1 CDS Shewana3_1504 NC_008577.1 1751487 1751786 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein complement(1751487..1751786) Shewanella sp. ANA-3 4478141 YP_869145.1 CDS Shewana3_1505 NC_008577.1 1751786 1752331 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(1751786..1752331) Shewanella sp. ANA-3 4478142 YP_869146.1 CDS Shewana3_1506 NC_008577.1 1752492 1753526 R PFAM: ferric iron reductase; KEGG: son:SO3034 ferric iron reductase protein, putative; ferric iron reductase complement(1752492..1753526) Shewanella sp. ANA-3 4478143 YP_869147.1 CDS Shewana3_1507 NC_008577.1 1753615 1755828 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO3033 ferric alcaligin siderophore receptor; TonB-dependent siderophore receptor complement(1753615..1755828) Shewanella sp. ANA-3 4478144 YP_869148.1 CDS Shewana3_1508 NC_008577.1 1755913 1757808 R PFAM: IucA/IucC family protein; KEGG: son:SO3032 siderophore biosynthesis protein, putative; IucA/IucC family protein complement(1755913..1757808) Shewanella sp. ANA-3 4478145 YP_869149.1 CDS Shewana3_1509 NC_008577.1 1757805 1758470 R KEGG: son:SO3031 siderophore biosynthesis protein, putative; siderophore biosynthesis protein complement(1757805..1758470) Shewanella sp. ANA-3 4477405 YP_869150.1 CDS Shewana3_1510 NC_008577.1 1758470 1759960 R KEGG: son:SO3030 siderophore biosynthesis protein; siderophore biosynthesis protein complement(1758470..1759960) Shewanella sp. ANA-3 4477406 YP_869151.1 CDS Shewana3_1511 NC_008577.1 1760540 1760821 R KEGG: son:SO3029 hypothetical protein; hypothetical protein complement(1760540..1760821) Shewanella sp. ANA-3 4477407 YP_869152.1 CDS Shewana3_1512 NC_008577.1 1761003 1761446 R KEGG: son:SO3027 hypothetical protein; glycerate kinase complement(1761003..1761446) Shewanella sp. ANA-3 4477408 YP_869153.1 CDS Shewana3_1513 NC_008577.1 1761659 1763608 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ppr:PBPRB1825 hypothetical receptor; TonB-dependent receptor complement(1761659..1763608) Shewanella sp. ANA-3 4477409 YP_869154.1 CDS Shewana3_1514 NC_008577.1 1763877 1764932 D PFAM: putative esterase; KEGG: son:SO3025 hypothetical protein; putative esterase 1763877..1764932 Shewanella sp. ANA-3 4477410 YP_869155.1 CDS trpA NC_008577.1 1765029 1765865 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(1765029..1765865) Shewanella sp. ANA-3 4477411 YP_869156.1 CDS Shewana3_1516 NC_008577.1 1765871 1767061 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(1765871..1767061) Shewanella sp. ANA-3 4477412 YP_869157.1 CDS Shewana3_1517 NC_008577.1 1767170 1768651 R monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase complement(1767170..1768651) Shewanella sp. ANA-3 4477413 YP_869158.1 CDS trpD NC_008577.1 1768657 1769700 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(1768657..1769700) Shewanella sp. ANA-3 4477414 YP_869159.1 CDS Shewana3_1519 NC_008577.1 1769700 1770308 R TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II complement(1769700..1770308) Shewanella sp. ANA-3 4477415 YP_869160.1 CDS Shewana3_1520 NC_008577.1 1770319 1772010 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I complement(1770319..1772010) Shewanella sp. ANA-3 4477416 YP_869161.1 CDS Shewana3_1521 NC_008577.1 1772380 1773240 D PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: son:SO3017 TrpH family protein; phosphotransferase domain-containing protein 1772380..1773240 Shewanella sp. ANA-3 4477417 YP_869162.1 CDS Shewana3_1522 NC_008577.1 1773237 1773857 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain protein; KEGG: son:SO3016 Sua5/YciO/YrdC/YwlC family protein; translation factor SUA5 1773237..1773857 Shewanella sp. ANA-3 4477418 YP_869163.1 CDS Shewana3_1523 NC_008577.1 1774047 1774835 D PFAM: chromosome segregation and condensation protein ScpA; KEGG: son:SO3015 putative segregation and condensation protein A; condensin subunit ScpA 1774047..1774835 Shewanella sp. ANA-3 4477419 YP_869164.1 CDS Shewana3_1524 NC_008577.1 1774839 1775435 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: son:SO3014 putative segregation and condensation protein B; condensin subunit ScpB 1774839..1775435 Shewanella sp. ANA-3 4477420 YP_869165.1 CDS Shewana3_1525 NC_008577.1 1775428 1776303 D TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: eca:ECA2291 putative RNA pseudouridylate synthase; ribosomal large subunit pseudouridine synthase B 1775428..1776303 Shewanella sp. ANA-3 4477421 YP_869166.1 CDS Shewana3_1526 NC_008577.1 1776417 1777379 D KEGG: son:SO2936 hypothetical protein; hypothetical protein 1776417..1777379 Shewanella sp. ANA-3 4477422 YP_869167.1 CDS Shewana3_1527 NC_008577.1 1777531 1777968 D PFAM: transposase IS200-family protein; KEGG: vch:VCA0275 IS1004 transposase; transposase IS200-family protein 1777531..1777968 Shewanella sp. ANA-3 4477423 YP_869168.1 CDS Shewana3_1528 NC_008577.1 1778066 1778803 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO2935 short chain dehydrogenase; short chain dehydrogenase complement(1778066..1778803) Shewanella sp. ANA-3 4477424 YP_869169.1 CDS Shewana3_1529 NC_008577.1 1779065 1781551 D KEGG: son:SO2934 hypothetical protein; hypothetical protein 1779065..1781551 Shewanella sp. ANA-3 4477425 YP_869170.1 CDS Shewana3_1530 NC_008577.1 1781664 1782680 D SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 1781664..1782680 Shewanella sp. ANA-3 4477426 YP_869171.1 CDS Shewana3_1531 NC_008577.1 1782874 1783905 D PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: son:SO2932 transcriptional regulator, AraC family; AraC family transcriptional regulator 1782874..1783905 Shewanella sp. ANA-3 4477427 YP_869172.1 CDS Shewana3_1532 NC_008577.1 1784046 1785230 R KEGG: son:SO2931 hypothetical protein; hypothetical protein complement(1784046..1785230) Shewanella sp. ANA-3 4477428 YP_869173.1 CDS Shewana3_1533 NC_008577.1 1785369 1788104 R KEGG: son:SO2930 hypothetical protein; hypothetical protein complement(1785369..1788104) Shewanella sp. ANA-3 4477429 YP_869174.1 CDS Shewana3_1534 NC_008577.1 1788543 1791095 D PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: ade:Adeh_2257 hypothetical protein; hypothetical protein 1788543..1791095 Shewanella sp. ANA-3 4477430 YP_869175.1 CDS Shewana3_1535 NC_008577.1 1791103 1791834 D KEGG: atc:AGR_C_4582 virulence gene acvB product; Type IV secretory pathway VirJ component-like protein 1791103..1791834 Shewanella sp. ANA-3 4477431 YP_869176.1 CDS Shewana3_1536 NC_008577.1 1791925 1792992 R KEGG: son:SO2929 hypothetical protein; hypothetical protein complement(1791925..1792992) Shewanella sp. ANA-3 4477432 YP_869177.1 CDS Shewana3_1537 NC_008577.1 1793137 1793736 R PFAM: lipolytic enzyme, G-D-S-L family; KEGG: son:SO2928 acyl-CoA thioesterase I, putative; GDSL family lipase complement(1793137..1793736) Shewanella sp. ANA-3 4477433 YP_869178.1 CDS Shewana3_1538 NC_008577.1 1793789 1794538 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO2927 ABC transporter, ATP-binding protein; ABC transporter-like protein 1793789..1794538 Shewanella sp. ANA-3 4477434 YP_869179.1 CDS Shewana3_1539 NC_008577.1 1794542 1797043 D PFAM: protein of unknown function DUF214; KEGG: son:SO2926 ABC transporter, permease, putative; hypothetical protein 1794542..1797043 Shewanella sp. ANA-3 4477435 YP_869180.1 CDS Shewana3_1540 NC_008577.1 1797324 1797986 D TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: son:SO2924 signal peptidase I family protein; signal peptidase I 1797324..1797986 Shewanella sp. ANA-3 4477436 YP_869181.1 CDS Shewana3_1541 NC_008577.1 1798073 1799296 R PFAM: sodium/glutamate symporter; KEGG: son:SO2923 sodium/glutamate symporter; sodium/glutamate symporter complement(1798073..1799296) Shewanella sp. ANA-3 4477437 YP_869182.1 CDS Shewana3_1542 NC_008577.1 1799862 1800752 R TIGRFAM: conserved hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: son:SO2922 hypothetical protein; hypothetical protein complement(1799862..1800752) Shewanella sp. ANA-3 4477438 YP_869183.1 CDS folX NC_008577.1 1800826 1801191 R catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase complement(1800826..1801191) Shewanella sp. ANA-3 4477439 YP_869184.1 CDS Shewana3_1544 NC_008577.1 1801289 1802395 D PFAM: protein of unknown function UPF0118; KEGG: son:SO2920 hypothetical protein; hypothetical protein 1801289..1802395 Shewanella sp. ANA-3 4478768 YP_869185.1 CDS Shewana3_1545 NC_008577.1 1802402 1803313 D PFAM: conserved hypothetical protein 95; KEGG: son:SO2919 hypothetical protein; hypothetical protein 1802402..1803313 Shewanella sp. ANA-3 4478769 YP_869186.1 CDS Shewana3_1546 NC_008577.1 1803444 1803668 R KEGG: son:SO4126 hypothetical protein; hypothetical protein complement(1803444..1803668) Shewanella sp. ANA-3 4478770 YP_869187.1 CDS Shewana3_1547 NC_008577.1 1803990 1804082 D KEGG: son:SO2918 hypothetical protein; hypothetical protein 1803990..1804082 Shewanella sp. ANA-3 4478771 YP_869188.1 CDS Shewana3_1548 NC_008577.1 1804215 1804649 R KEGG: son:SO2917 hypothetical protein; hypothetical protein complement(1804215..1804649) Shewanella sp. ANA-3 4478772 YP_869189.1 CDS Shewana3_1549 NC_008577.1 1805136 1805531 D KEGG: dde:Dde_2987 transposase; transposase 1805136..1805531 Shewanella sp. ANA-3 4478773 YP_869190.1 CDS Shewana3_1550 NC_008577.1 1805561 1806364 D PFAM: Integrase, catalytic region; KEGG: par:Psyc_0937 putative transposase OrfB; integrase catalytic subunit 1805561..1806364 Shewanella sp. ANA-3 4478774 YP_869191.1 CDS Shewana3_1551 NC_008577.1 1806421 1808574 R catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase complement(1806421..1808574) Shewanella sp. ANA-3 4478775 YP_869192.1 CDS Shewana3_1552 NC_008577.1 1808697 1809896 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(1808697..1809896) Shewanella sp. ANA-3 4478776 YP_869193.1 CDS Shewana3_1553 NC_008577.1 1809984 1810481 D PFAM: protein of unknown function DUF412; KEGG: son:SO2914 hypothetical protein; hypothetical protein 1809984..1810481 Shewanella sp. ANA-3 4478777 YP_869194.1 CDS pflA NC_008577.1 1810497 1811237 R activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 complement(1810497..1811237) Shewanella sp. ANA-3 4478778 YP_869195.1 CDS Shewana3_1555 NC_008577.1 1811301 1813583 R TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: son:SO2912 formate acetyltransferase; formate acetyltransferase complement(1811301..1813583) Shewanella sp. ANA-3 4478779 YP_869196.1 CDS Shewana3_1556 NC_008577.1 1814601 1815575 D PFAM: formate/nitrite transporter; KEGG: son:SO2911 formate transporter, putative; methionine gamma-lyase 1814601..1815575 Shewanella sp. ANA-3 4478780 YP_869197.1 CDS Shewana3_1557 NC_008577.1 1815829 1817397 D PFAM: C4-dicarboxylate anaerobic carrier; Na+/H+ antiporter NhaC; KEGG: vpa:VPA1014 putative S-transferase; hypothetical protein 1815829..1817397 Shewanella sp. ANA-3 4478781 YP_869198.1 CDS Shewana3_1558 NC_008577.1 1817567 1820218 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2907 TonB-dependent receptor domain protein; TonB-dependent receptor complement(1817567..1820218) Shewanella sp. ANA-3 4478782 YP_869199.1 CDS Shewana3_1559 NC_008577.1 1820884 1821873 R PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: son:SO2906 hypothetical protein; C4-dicarboxylate transporter/malic acid transport protein complement(1820884..1821873) Shewanella sp. ANA-3 4478783 YP_869200.1 CDS Shewana3_1560 NC_008577.1 1821996 1823069 R PFAM: O-methyltransferase, family 2; Methyltransferase type 12; KEGG: son:SO2905 O-methyltransferase, putative; type 12 methyltransferase complement(1821996..1823069) Shewanella sp. ANA-3 4478784 YP_869201.1 CDS Shewana3_1561 NC_008577.1 1823283 1824251 R TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: son:SO2903 cysteine synthase A; cysteine synthase complement(1823283..1824251) Shewanella sp. ANA-3 4478785 YP_869202.1 CDS Shewana3_1562 NC_008577.1 1824497 1825846 D PFAM: RDD domain containing protein; KEGG: son:SO2902 hypothetical protein; RDD domain-containing protein 1824497..1825846 Shewanella sp. ANA-3 4478786 YP_869203.1 CDS Shewana3_1563 NC_008577.1 1825843 1826970 D catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1825843..1826970 Shewanella sp. ANA-3 4478787 YP_869204.1 CDS Shewana3_1564 NC_008577.1 1827141 1827590 D KEGG: pfo:Pfl_1677 hypothetical protein; hypothetical protein 1827141..1827590 Shewanella sp. ANA-3 4478788 YP_869205.1 CDS Shewana3_1565 NC_008577.1 1827650 1830049 R KEGG: son:SO2900 hypothetical protein; hypothetical protein complement(1827650..1830049) Shewanella sp. ANA-3 4478789 YP_869206.1 CDS Shewana3_1566 NC_008577.1 1830178 1830957 R putative role in sulfur assimilation; putative sulfate transport protein CysZ complement(1830178..1830957) Shewanella sp. ANA-3 4478790 YP_869207.1 CDS Shewana3_1567 NC_008577.1 1831199 1834627 D TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: son:SO2898 SMC family protein; chromosome segregation protein SMC 1831199..1834627 Shewanella sp. ANA-3 4478791 YP_869208.1 CDS Shewana3_1568 NC_008577.1 1834654 1835694 D TIGRFAM: cell division protein ZipA; PFAM: ZipA, C-terminal FtsZ-binding region; KEGG: son:SO2897 cell division protein ZipA; cell division protein ZipA 1834654..1835694 Shewanella sp. ANA-3 4478792 YP_869209.1 CDS Shewana3_1569 NC_008577.1 1835787 1837862 D KEGG: son:SO2896 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; NAD-dependent DNA ligase; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase 1835787..1837862 Shewanella sp. ANA-3 4478793 YP_869210.1 CDS Shewana3_1570 NC_008577.1 1838088 1838582 D KEGG: son:SO2863 hypothetical protein; hypothetical protein 1838088..1838582 Shewanella sp. ANA-3 4478794 YP_869211.1 CDS Shewana3_1571 NC_008577.1 1838793 1839998 D TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: son:SO2862 HDIG domain protein; metal dependent phosphohydrolase 1838793..1839998 Shewanella sp. ANA-3 4478795 YP_869212.1 CDS Shewana3_1572 NC_008577.1 1840055 1840912 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: son:SO2861 hypothetical protein; NAD-dependent epimerase/dehydratase 1840055..1840912 Shewanella sp. ANA-3 4478796 YP_869213.1 CDS Shewana3_1573 NC_008577.1 1841013 1841666 D PFAM: DSBA oxidoreductase; KEGG: son:SO2860 thiol:disulfide interchange protein, DsbA family; DSBA oxidoreductase 1841013..1841666 Shewanella sp. ANA-3 4478797 YP_869214.1 CDS Shewana3_1574 NC_008577.1 1842379 1842645 D KEGG: son:SO2858 hypothetical protein; hypothetical protein 1842379..1842645 Shewanella sp. ANA-3 4478798 YP_869215.1 CDS Shewana3_1575 NC_008577.1 1842657 1844393 D PFAM: Na+/solute symporter; KEGG: son:SO2857 sodium/solute symporter family protein; Na+/solute symporter 1842657..1844393 Shewanella sp. ANA-3 4478799 YP_869216.1 CDS Shewana3_1576 NC_008577.1 1844556 1846418 D PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: son:SO2856 CBS domain protein; cyclic nucleotide-binding protein 1844556..1846418 Shewanella sp. ANA-3 4478800 YP_869217.1 CDS Shewana3_1577 NC_008577.1 1846418 1847104 D PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: son:SO2855 exonuclease; exonuclease 1846418..1847104 Shewanella sp. ANA-3 4478801 YP_869218.1 CDS Shewana3_1578 NC_008577.1 1847247 1847672 R PFAM: regulatory protein, MarR; KEGG: ppr:PBPRB1157 putative transcriptional regulator, MarR family; MarR family transcriptional regulator complement(1847247..1847672) Shewanella sp. ANA-3 4478802 YP_869219.1 CDS Shewana3_1579 NC_008577.1 1847909 1848904 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: ppr:PBPRB1158 hypothetical alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase 1847909..1848904 Shewanella sp. ANA-3 4478803 YP_869220.1 CDS Shewana3_1580 NC_008577.1 1849483 1850082 D KEGG: son:SO2854 hypothetical protein; hypothetical protein 1849483..1850082 Shewanella sp. ANA-3 4478804 YP_869221.1 CDS Shewana3_1581 NC_008577.1 1850125 1851189 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis; 3-oxoacyl-ACP synthase complement(1850125..1851189) Shewanella sp. ANA-3 4478805 YP_869222.1 CDS Shewana3_1582 NC_008577.1 1851282 1851953 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: son:SO2852 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(1851282..1851953) Shewanella sp. ANA-3 4478806 YP_869223.1 CDS Shewana3_1583 NC_008577.1 1852270 1852821 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 1852270..1852821 Shewanella sp. ANA-3 4478807 YP_869224.1 CDS Shewana3_1584 NC_008577.1 1858896 1859612 R KEGG: son:SO3571 hypothetical protein; hypothetical protein complement(1858896..1859612) Shewanella sp. ANA-3 4478813 YP_869225.1 CDS cpdB NC_008577.1 1859839 1861896 R periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein complement(1859839..1861896) Shewanella sp. ANA-3 4478814 YP_869226.1 CDS Shewana3_1586 NC_008577.1 1862588 1864735 D PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO3564 peptidyl-dipeptidase Dcp; peptidyl-dipeptidase Dcp 1862588..1864735 Shewanella sp. ANA-3 4478815 YP_869227.1 CDS Shewana3_1587 NC_008577.1 1864961 1865584 D SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO3563 SM-20 domain protein; prolyl 4-hydroxylase subunit alpha 1864961..1865584 Shewanella sp. ANA-3 4478816 YP_869228.1 CDS Shewana3_1588 NC_008577.1 1865998 1866600 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2850 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1865998..1866600 Shewanella sp. ANA-3 4478817 YP_869229.1 CDS Shewana3_1589 NC_008577.1 1866683 1867147 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2849 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1866683..1867147 Shewanella sp. ANA-3 4478818 YP_869230.1 CDS Shewana3_1590 NC_008577.1 1867182 1867577 D KEGG: son:SO2848 hypothetical protein; hypothetical protein 1867182..1867577 Shewanella sp. ANA-3 4478819 YP_869231.1 CDS Shewana3_1591 NC_008577.1 1867839 1868225 D hypothetical protein 1867839..1868225 Shewanella sp. ANA-3 4476546 YP_869232.1 CDS Shewana3_1592 NC_008577.1 1868461 1869525 D KEGG: son:SO1840 hypothetical protein; hypothetical protein 1868461..1869525 Shewanella sp. ANA-3 4476547 YP_869233.1 CDS Shewana3_1593 NC_008577.1 1869518 1870642 D KEGG: son:SO1842 hypothetical protein; hypothetical protein 1869518..1870642 Shewanella sp. ANA-3 4476548 YP_869234.1 CDS Shewana3_1594 NC_008577.1 1870642 1871157 D KEGG: son:SO1843 hypothetical protein; hypothetical protein 1870642..1871157 Shewanella sp. ANA-3 4476549 YP_869235.1 CDS Shewana3_1595 NC_008577.1 1871397 1874243 D PFAM: PKD domain containing protein; Endonuclease/exonuclease/phosphatase; KEGG: son:SO1844 extracellular nuclease, putative; PKD domain-containing protein 1871397..1874243 Shewanella sp. ANA-3 4476550 YP_869236.1 CDS Shewana3_1596 NC_008577.1 1874475 1874903 D KEGG: son:SO1845 hypothetical protein; hypothetical protein 1874475..1874903 Shewanella sp. ANA-3 4476551 YP_869237.1 CDS Shewana3_1597 NC_008577.1 1874962 1875858 R KEGG: son:SO1846 hypothetical protein; hypothetical protein complement(1874962..1875858) Shewanella sp. ANA-3 4476552 YP_869238.1 CDS Shewana3_1598 NC_008577.1 1875869 1876627 R KEGG: son:SO1848 hypothetical protein; hypothetical protein complement(1875869..1876627) Shewanella sp. ANA-3 4476553 YP_869239.1 CDS Shewana3_1599 NC_008577.1 1876627 1877166 R KEGG: son:SO1849 hypothetical protein; hypothetical protein complement(1876627..1877166) Shewanella sp. ANA-3 4476554 YP_869240.1 CDS Shewana3_1600 NC_008577.1 1877302 1877586 R PFAM: heat shock protein DnaJ domain protein; KEGG: son:SO1850 DnaJ domain protein; heat shock protein DnaJ domain-containing protein complement(1877302..1877586) Shewanella sp. ANA-3 4476555 YP_869241.1 CDS rlmL NC_008577.1 1878599 1880740 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1878599..1880740 Shewanella sp. ANA-3 4476559 YP_869242.1 CDS Shewana3_1602 NC_008577.1 1880733 1880972 D PFAM: glutaredoxin; glutaredoxin 2; KEGG: son:SO1852 hypothetical protein; glutaredoxin 1880733..1880972 Shewanella sp. ANA-3 4476560 YP_869243.1 CDS Shewana3_1603 NC_008577.1 1880974 1882896 D Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1880974..1882896 Shewanella sp. ANA-3 4476561 YP_869244.1 CDS Shewana3_1604 NC_008577.1 1882924 1884747 D KEGG: son:SO1854 hypothetical protein; hypothetical protein 1882924..1884747 Shewanella sp. ANA-3 4476562 YP_869245.1 CDS Shewana3_1605 NC_008577.1 1884935 1885111 D PFAM: ribosome modulation factor; KEGG: son:SO1855 ribosome modulation factor; ribosome modulation factor 1884935..1885111 Shewanella sp. ANA-3 4476563 YP_869246.1 CDS Shewana3_1606 NC_008577.1 1885219 1885734 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(1885219..1885734) Shewanella sp. ANA-3 4476564 YP_869247.1 CDS Shewana3_1607 NC_008577.1 1885809 1887557 R KEGG: son:SO1857 hypothetical ATP-dependent protease; ATP-dependent protease complement(1885809..1887557) Shewanella sp. ANA-3 4476565 YP_869248.1 CDS Shewana3_1608 NC_008577.1 1889127 1889771 D in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 1889127..1889771 Shewanella sp. ANA-3 4476568 YP_869249.1 CDS uvrC NC_008577.1 1889881 1891710 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1889881..1891710 Shewanella sp. ANA-3 4476569 YP_869250.1 CDS Shewana3_1610 NC_008577.1 1891758 1892306 D TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: son:SO1862 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1891758..1892306 Shewanella sp. ANA-3 4476570 YP_869251.1 CDS Shewana3_1611 NC_008577.1 1893968 1894246 D hypothetical protein 1893968..1894246 Shewanella sp. ANA-3 4476575 YP_869252.1 CDS Shewana3_1612 NC_008577.1 1894810 1896678 D KEGG: sde:Sde_0798 hypothetical protein; hypothetical protein 1894810..1896678 Shewanella sp. ANA-3 4476576 YP_869253.1 CDS Shewana3_1613 NC_008577.1 1896738 1898720 D PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: pha:PSHAa2649 serine protease precursor; rRNA (guanine-N(1)-)-methyltransferase 1896738..1898720 Shewanella sp. ANA-3 4476577 YP_869254.1 CDS Shewana3_1615 NC_008577.1 1899880 1900155 R PFAM: histone family protein DNA-binding protein; KEGG: son:SO1863 DNA-binding protein, HU family; histone family protein DNA-binding protein complement(1899880..1900155) Shewanella sp. ANA-3 4476579 YP_869255.1 CDS Shewana3_1616 NC_008577.1 1901027 1902412 R hypothetical protein complement(1901027..1902412) Shewanella sp. ANA-3 4476580 YP_869256.1 CDS Shewana3_1617 NC_008577.1 1902543 1903385 R hypothetical protein complement(1902543..1903385) Shewanella sp. ANA-3 4476581 YP_869257.1 CDS Shewana3_1618 NC_008577.1 1903713 1904345 D PFAM: Sigma-70, region 4 type 2; KEGG: vfi:VF2498 DNA-directed RNA polymerase specialized sigma subunit; ECF subfamily RNA polymerase sigma-24 factor 1903713..1904345 Shewanella sp. ANA-3 4476582 YP_869258.1 CDS Shewana3_1619 NC_008577.1 1904362 1907187 D PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: vvu:VV11095 serine/threonine protein kinase; serine/threonine protein kinase 1904362..1907187 Shewanella sp. ANA-3 4476583 YP_869259.1 CDS Shewana3_1620 NC_008577.1 1907308 1908216 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1865 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(1907308..1908216) Shewanella sp. ANA-3 4476584 YP_869260.1 CDS Shewana3_1621 NC_008577.1 1908213 1909043 R KEGG: son:SO1866 hypothetical protein; hypothetical protein complement(1908213..1909043) Shewanella sp. ANA-3 4476585 YP_869261.1 CDS Shewana3_1622 NC_008577.1 1909131 1909787 R PFAM: protein of unknown function DUF480; KEGG: son:SO1867 hypothetical protein; hypothetical protein complement(1909131..1909787) Shewanella sp. ANA-3 4476586 YP_869262.1 CDS Shewana3_1623 NC_008577.1 1909954 1910793 R KEGG: son:SO1868 hypothetical protein; hypothetical protein complement(1909954..1910793) Shewanella sp. ANA-3 4476587 YP_869263.1 CDS Shewana3_1624 NC_008577.1 1911885 1913798 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 1911885..1913798 Shewanella sp. ANA-3 4476588 YP_869264.1 CDS Shewana3_1625 NC_008577.1 1914094 1915029 D PFAM: S-adenosylmethionine decarboxylase; KEGG: son:SO1871 S-adenosylmethionine decarboxylase proenzyme, putative; S-adenosylmethionine decarboxylase 1914094..1915029 Shewanella sp. ANA-3 4476589 YP_869265.1 CDS Shewana3_1626 NC_008577.1 1915257 1915895 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1915257..1915895 Shewanella sp. ANA-3 4476590 YP_869266.1 CDS Shewana3_1627 NC_008577.1 1915914 1916366 D PFAM: protein of unknown function DUF188; KEGG: son:SO2894 YaiI/YqxD family protein; hypothetical protein 1915914..1916366 Shewanella sp. ANA-3 4476591 YP_869267.1 CDS Shewana3_1628 NC_008577.1 1916518 1917093 D PFAM: YceI family protein; KEGG: son:SO2893 hypothetical protein; hypothetical protein 1916518..1917093 Shewanella sp. ANA-3 4476592 YP_869268.1 CDS Shewana3_1629 NC_008577.1 1917254 1917610 D KEGG: son:SO2891 hypothetical protein; hypothetical protein 1917254..1917610 Shewanella sp. ANA-3 4476593 YP_869269.1 CDS Shewana3_1630 NC_008577.1 1917977 1918360 D KEGG: son:SO2890 hypothetical protein; hypothetical protein 1917977..1918360 Shewanella sp. ANA-3 4476594 YP_869270.1 CDS Shewana3_1631 NC_008577.1 1918551 1919516 D PFAM: protein of unknown function DUF785; KEGG: ppr:PBPRB0931 hypothetical protein; hypothetical protein 1918551..1919516 Shewanella sp. ANA-3 4476595 YP_869271.1 CDS Shewana3_1632 NC_008577.1 1919548 1922166 R KEGG: son:SO2889 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase complement(1919548..1922166) Shewanella sp. ANA-3 4476596 YP_869272.1 CDS Shewana3_1633 NC_008577.1 1922337 1922864 R disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B complement(1922337..1922864) Shewanella sp. ANA-3 4476597 YP_869273.1 CDS nhaB NC_008577.1 1922960 1924561 R involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter complement(1922960..1924561) Shewanella sp. ANA-3 4476598 YP_869274.1 CDS Shewana3_1635 NC_008577.1 1924865 1925590 D Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 1924865..1925590 Shewanella sp. ANA-3 4476090 YP_869275.1 CDS Shewana3_1636 NC_008577.1 1925698 1927224 R PFAM: SpoVR family protein; KEGG: son:SO2884 hypothetical protein; SpoVR family protein complement(1925698..1927224) Shewanella sp. ANA-3 4476091 YP_869276.1 CDS Shewana3_1637 NC_008577.1 1927234 1928508 R PFAM: protein of unknown function DUF444; KEGG: son:SO2883 hypothetical protein; hypothetical protein complement(1927234..1928508) Shewanella sp. ANA-3 4476092 YP_869277.1 CDS Shewana3_1638 NC_008577.1 1928568 1930502 R PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: son:SO2882 hypothetical Ser protein kinas; putative serine protein kinase PrkA complement(1928568..1930502) Shewanella sp. ANA-3 4476093 YP_869278.1 CDS Shewana3_1639 NC_008577.1 1930754 1931338 R PFAM: manganese and iron superoxide dismutase; KEGG: son:SO2881 superoxide dismutase, Fe; manganese and iron superoxide dismutase complement(1930754..1931338) Shewanella sp. ANA-3 4476094 YP_869279.1 CDS Shewana3_1640 NC_008577.1 1931565 1931897 D TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: son:SO2880 glutaredoxin domain protein; glutaredoxin-like protein 1931565..1931897 Shewanella sp. ANA-3 4476095 YP_869280.1 CDS Shewana3_1641 NC_008577.1 1932027 1933265 R TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: son:SO2879 uracil permease; uracil-xanthine permease complement(1932027..1933265) Shewanella sp. ANA-3 4476096 YP_869281.1 CDS Shewana3_1642 NC_008577.1 1933481 1934563 D KEGG: son:SO2878 hypothetical protein; hypothetical protein 1933481..1934563 Shewanella sp. ANA-3 4476097 YP_869282.1 CDS Shewana3_1643 NC_008577.1 1934642 1935352 D controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 1934642..1935352 Shewanella sp. ANA-3 4476098 YP_869283.1 CDS Shewana3_1644 NC_008577.1 1935489 1935884 D KEGG: dde:Dde_2987 transposase; transposase 1935489..1935884 Shewanella sp. ANA-3 4476099 YP_869284.1 CDS Shewana3_1645 NC_008577.1 1935914 1936717 D PFAM: Integrase, catalytic region; KEGG: par:Psyc_0937 putative transposase OrfB; integrase catalytic subunit 1935914..1936717 Shewanella sp. ANA-3 4476100 YP_869285.1 CDS Shewana3_1646 NC_008577.1 1936816 1938744 R KEGG: son:SO2876 hypothetical protein; hypothetical protein complement(1936816..1938744) Shewanella sp. ANA-3 4476101 YP_869286.1 CDS Shewana3_1647 NC_008577.1 1939133 1939513 R KEGG: son:SO2872 hypothetical protein; hypothetical protein complement(1939133..1939513) Shewanella sp. ANA-3 4476102 YP_869287.1 CDS Shewana3_1648 NC_008577.1 1939561 1939911 R TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: son:SO2871 arsenate reductase, putative; arsenate reductase complement(1939561..1939911) Shewanella sp. ANA-3 4476103 YP_869288.1 CDS Shewana3_1649 NC_008577.1 1940023 1941492 R PFAM: peptidase M48, Ste24p; Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO2869 hypothetical protein; peptidase M48, Ste24p complement(1940023..1941492) Shewanella sp. ANA-3 4476104 YP_869289.1 CDS Shewana3_1650 NC_008577.1 1941605 1941838 D PFAM: SirA family protein; KEGG: son:SO2868 hypothetical protein; SirA family protein 1941605..1941838 Shewanella sp. ANA-3 4476105 YP_869290.1 CDS Shewana3_1651 NC_008577.1 1942047 1943147 D PFAM: protein of unknown function UPF0118; KEGG: son:SO2867 permease PerM, putative; hypothetical protein 1942047..1943147 Shewanella sp. ANA-3 4476106 YP_869291.1 CDS Shewana3_1652 NC_008577.1 1943259 1944176 R specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein complement(1943259..1944176) Shewanella sp. ANA-3 4476107 YP_869292.1 CDS Shewana3_1653 NC_008577.1 1944289 1944903 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO2865 L-lysine exporter, putative; lysine exporter protein LysE/YggA 1944289..1944903 Shewanella sp. ANA-3 4476108 YP_869293.1 CDS bcp NC_008577.1 1945084 1945551 R bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase complement(1945084..1945551) Shewanella sp. ANA-3 4476109 YP_869294.1 CDS Shewana3_1655 NC_008577.1 1945555 1946106 R KEGG: son:SO1878 glycine cleavage system transcriptional repressor, putative; glycine cleavage system transcriptional repressor complement(1945555..1946106) Shewanella sp. ANA-3 4476110 YP_869295.1 CDS Shewana3_1656 NC_008577.1 1946279 1947163 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1946279..1947163 Shewanella sp. ANA-3 4476111 YP_869296.1 CDS Shewana3_1657 NC_008577.1 1947167 1948264 D PFAM: NlpBDapX family lipoprotein; KEGG: son:SO1880 lipoprotein-34 NlpB; NlpB/DapX family lipoprotein 1947167..1948264 Shewanella sp. ANA-3 4476112 YP_869297.1 CDS Shewana3_1658 NC_008577.1 1948635 1949717 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO1881 HlyD family-related protein; RND family efflux transporter MFP subunit 1948635..1949717 Shewanella sp. ANA-3 4476113 YP_869298.1 CDS Shewana3_1659 NC_008577.1 1949714 1952809 D PFAM: acriflavin resistance protein; KEGG: son:SO1882 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 1949714..1952809 Shewanella sp. ANA-3 4476114 YP_869299.1 CDS Shewana3_1660 NC_008577.1 1952884 1953318 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1883 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(1952884..1953318) Shewanella sp. ANA-3 4476115 YP_869300.1 CDS Shewana3_1661 NC_008577.1 1953318 1954001 R PFAM: Negative transcriptional regulator; KEGG: dra:DR1683 transcriptional regulator, putative; negative transcriptional regulator complement(1953318..1954001) Shewanella sp. ANA-3 4476116 YP_869301.1 CDS Shewana3_1662 NC_008577.1 1954074 1954829 R PFAM: protein of unknown function DUF81; KEGG: son:SO1884 membrane protein, putative; hypothetical protein complement(1954074..1954829) Shewanella sp. ANA-3 4476117 YP_869302.1 CDS Shewana3_1663 NC_008577.1 1955055 1955366 R KEGG: son:SO1886 hypothetical protein; hypothetical protein complement(1955055..1955366) Shewanella sp. ANA-3 4476118 YP_869303.1 CDS Shewana3_1664 NC_008577.1 1955402 1956004 R PFAM: ThiJ/PfpI domain protein; KEGG: son:SO1887 hypothetical protein; ThiJ/PfpI domain-containing protein complement(1955402..1956004) Shewanella sp. ANA-3 4477174 YP_869304.1 CDS Shewana3_1665 NC_008577.1 1956112 1957143 R hypothetical protein complement(1956112..1957143) Shewanella sp. ANA-3 4477175 YP_869305.1 CDS Shewana3_1666 NC_008577.1 1957549 1958205 R TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; KEGG: son:SO1891 3-oxoacid CoA-transferase subunit B; butyryl-CoA:acetate CoA transferase complement(1957549..1958205) Shewanella sp. ANA-3 4477176 YP_869306.1 CDS Shewana3_1667 NC_008577.1 1958315 1959019 R TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; KEGG: son:SO1892 acetate CoA-transferase, subunit A; 3-oxoacid CoA-transferase subunit A complement(1958315..1959019) Shewanella sp. ANA-3 4477177 YP_869307.1 CDS Shewana3_1668 NC_008577.1 1959088 1960020 R PFAM: pyruvate carboxyltransferase; KEGG: son:SO1893 hydroxymethylglutaryl-CoA lyase; hydroxymethylglutaryl-CoA lyase complement(1959088..1960020) Shewanella sp. ANA-3 4477178 YP_869308.1 CDS Shewana3_1669 NC_008577.1 1960021 1962045 R PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO1894 3-methylcrotonyl-CoA carboxylase alpha subunit; 3-methylcrotonoyl-CoA carboxylase subunit alpha complement(1960021..1962045) Shewanella sp. ANA-3 4477179 YP_869309.1 CDS Shewana3_1670 NC_008577.1 1962045 1962905 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO1895 enoyl-CoA hydratase; methylglutaconyl-CoA hydratase complement(1962045..1962905) Shewanella sp. ANA-3 4477180 YP_869310.1 CDS Shewana3_1671 NC_008577.1 1962950 1964557 R PFAM: carboxyl transferase; KEGG: son:SO1896 3-methylcrotonyl-CoA carboxylase beta subunit; carboxyl transferase complement(1962950..1964557) Shewanella sp. ANA-3 4477181 YP_869311.1 CDS Shewana3_1672 NC_008577.1 1964658 1965827 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO1897 isovaleryl-CoA dehydrogenase; isovaleryl-CoA dehydrogenase complement(1964658..1965827) Shewanella sp. ANA-3 4477182 YP_869312.1 CDS Shewana3_1673 NC_008577.1 1965981 1966385 R PFAM: regulatory protein, MerR; KEGG: son:SO1898 transcriptional regulator, putative; MerR family transcriptional regulator complement(1965981..1966385) Shewanella sp. ANA-3 4477183 YP_869313.1 CDS Shewana3_1674 NC_008577.1 1966659 1968341 R PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO1899 hypothetical protein; peptidoglycan binding domain-containing protein complement(1966659..1968341) Shewanella sp. ANA-3 4477184 YP_869314.1 CDS Shewana3_1675 NC_008577.1 1968553 1970475 D PFAM: AMP-dependent synthetase and ligase; KEGG: mag:amb2304 acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; AMP-dependent synthetase and ligase 1968553..1970475 Shewanella sp. ANA-3 4477185 YP_869315.1 CDS Shewana3_1676 NC_008577.1 1970798 1971112 D PFAM: small multidrug resistance protein; KEGG: son:SO1901 sugE protein; small multidrug resistance protein 1970798..1971112 Shewanella sp. ANA-3 4477186 YP_869316.1 CDS Shewana3_1677 NC_008577.1 1971340 1972866 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1971340..1972866 Shewanella sp. ANA-3 4477187 YP_869317.1 CDS Shewana3_1678 NC_008577.1 1973404 1975521 D PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Proprotein convertase, P; KEGG: vpa:VPA1071 putative extracellular serine protease; peptidase S8/S53 subtilisin kexin sedolisin 1973404..1975521 Shewanella sp. ANA-3 4477188 YP_869318.1 CDS Shewana3_1679 NC_008577.1 1975532 1975996 D hypothetical protein 1975532..1975996 Shewanella sp. ANA-3 4477189 YP_869319.1 CDS Shewana3_1680 NC_008577.1 1976251 1976961 D KEGG: son:SO1903 hypothetical protein; hypothetical protein 1976251..1976961 Shewanella sp. ANA-3 4477190 YP_869320.1 CDS Shewana3_1681 NC_008577.1 1977071 1977598 D hypothetical protein 1977071..1977598 Shewanella sp. ANA-3 4477191 YP_869321.1 CDS Shewana3_1682 NC_008577.1 1977852 1978187 D KEGG: ilo:IL1490 hypothetical protein; hypothetical protein 1977852..1978187 Shewanella sp. ANA-3 4477192 YP_869322.1 CDS Shewana3_1683 NC_008577.1 1978257 1979156 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1907 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1978257..1979156) Shewanella sp. ANA-3 4477193 YP_869323.1 CDS Shewana3_1684 NC_008577.1 1979356 1979835 D KEGG: son:SO1908 hypothetical protein; hypothetical protein 1979356..1979835 Shewanella sp. ANA-3 4477194 YP_869324.1 CDS Shewana3_1685 NC_008577.1 1979907 1980716 D PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: son:SO1909 hypothetical protein; extradiol ring-cleavage dioxygenase III subunit B 1979907..1980716 Shewanella sp. ANA-3 4477195 YP_869325.1 CDS Shewana3_1686 NC_008577.1 1980869 1981744 R TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: son:SO1910 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphtoate prenyltransferase complement(1980869..1981744) Shewanella sp. ANA-3 4477196 YP_869326.1 CDS Shewana3_1687 NC_008577.1 1982069 1983022 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO1911 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 1982069..1983022 Shewanella sp. ANA-3 4477197 YP_869327.1 CDS Shewana3_1688 NC_008577.1 1983137 1984003 D TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; KEGG: son:SO1912 acyl-CoA thioesterase II; acyl-CoA thioesterase II 1983137..1984003 Shewanella sp. ANA-3 4477198 YP_869328.1 CDS Shewana3_1689 NC_008577.1 1984005 1984409 D KEGG: son:SO1913 hypothetical protein; hypothetical protein 1984005..1984409 Shewanella sp. ANA-3 4477199 YP_869329.1 CDS Shewana3_1690 NC_008577.1 1985098 1989000 D PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; peptidase domain protein; proteinase inhibitor I9, subtilisin propeptide; KEGG: son:SO1915 serine protease, subtilase family; protease domain-containing protein 1985098..1989000 Shewanella sp. ANA-3 4477200 YP_869330.1 CDS Shewana3_1691 NC_008577.1 1989085 1989966 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1916 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1989085..1989966) Shewanella sp. ANA-3 4477201 YP_869331.1 CDS Shewana3_1692 NC_008577.1 1990179 1991489 D PFAM: major facilitator superfamily MFS_1; KEGG: son:SO1917 multidrug resistance protein, putative; Xaa-His dipeptidase 1990179..1991489 Shewanella sp. ANA-3 4477202 YP_869332.1 CDS Shewana3_1693 NC_008577.1 1991972 1992889 D KEGG: pca:Pcar_1086 conserved hypothetical signal peptide protein; putative signal peptide protein 1991972..1992889 Shewanella sp. ANA-3 4477203 YP_869333.1 CDS Shewana3_1694 NC_008577.1 1992984 1994030 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfl:PFL_2420 D-isomer specific 2-hydroxyacid dehydrogenase family protein; alcohol dehydrogenase 1992984..1994030 Shewanella sp. ANA-3 4477204 YP_869334.1 CDS Shewana3_1695 NC_008577.1 1994139 1994576 D PFAM: Cupin 2, conserved barrel domain protein; KEGG: sme:SMc01911 hypothetical protein; cupin 1994139..1994576 Shewanella sp. ANA-3 4477205 YP_869335.1 CDS Shewana3_1696 NC_008577.1 1994679 1995053 R KEGG: rso:RSc0630 hypothetical protein; hypothetical protein complement(1994679..1995053) Shewanella sp. ANA-3 4477206 YP_869336.1 CDS Shewana3_1697 NC_008577.1 1995135 1995674 R PFAM: Cupin 2, conserved barrel domain protein; KEGG: rfr:Rfer_2441 carboxymuconolactone decarboxylase; cupin complement(1995135..1995674) Shewanella sp. ANA-3 4477207 YP_869337.1 CDS Shewana3_1698 NC_008577.1 1995884 1996792 D PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; KEGG: rso:RSc0625 probable transcription regulator protein; AraC family transcriptional regulator 1995884..1996792 Shewanella sp. ANA-3 4477208 YP_869338.1 CDS Shewana3_1699 NC_008577.1 1997135 1998697 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO1918 MATE efflux family protein; MATE efflux family protein 1997135..1998697 Shewanella sp. ANA-3 4479532 YP_869339.1 CDS Shewana3_1700 NC_008577.1 1998853 1999071 R KEGG: son:SO1921 hypothetical protein; hypothetical protein complement(1998853..1999071) Shewanella sp. ANA-3 4479533 YP_869340.1 CDS Shewana3_1701 NC_008577.1 1999340 1999672 D PFAM: Uncharacterized conserved protein UCP029143; KEGG: son:SO1922 hypothetical protein; hypothetical protein 1999340..1999672 Shewanella sp. ANA-3 4479534 YP_869341.1 CDS Shewana3_1702 NC_008577.1 1999832 2002888 R PFAM: acriflavin resistance protein; KEGG: son:SO1923 AcrB/AcrD/AcrF family protein; acriflavin resistance protein complement(1999832..2002888) Shewanella sp. ANA-3 4479535 YP_869342.1 CDS Shewana3_1703 NC_008577.1 2002885 2006148 R PFAM: acriflavin resistance protein; KEGG: son:SO1924 AcrB/AcrD/AcrF family protein; acriflavin resistance protein complement(2002885..2006148) Shewanella sp. ANA-3 4479536 YP_869343.1 CDS Shewana3_1704 NC_008577.1 2006161 2007225 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO1925 HlyD family secretion protein; RND family efflux transporter MFP subunit complement(2006161..2007225) Shewanella sp. ANA-3 4479537 YP_869344.1 CDS gltA NC_008577.1 2007512 2008798 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(2007512..2008798) Shewanella sp. ANA-3 4479538 YP_869345.1 CDS Shewana3_1706 NC_008577.1 2009215 2009610 D PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: son:SO1927 succinate dehydrogenase, cytochrome b556 subunit; succinate dehydrogenase subunit C 2009215..2009610 Shewanella sp. ANA-3 4479539 YP_869346.1 CDS Shewana3_1707 NC_008577.1 2009604 2009951 D KEGG: son:SO1927.1 hypothetical succinate dehydrogenase, hydrophobic subunit; succinate dehydrogenase subunit D 2009604..2009951 Shewanella sp. ANA-3 4479540 YP_869347.1 CDS sdhA NC_008577.1 2009952 2011718 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 2009952..2011718 Shewanella sp. ANA-3 4479541 YP_869348.1 CDS sdhB NC_008577.1 2011730 2012437 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 2011730..2012437 Shewanella sp. ANA-3 4479542 YP_869349.1 CDS sucA NC_008577.1 2012652 2015471 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 2012652..2015471 Shewanella sp. ANA-3 4479543 YP_869350.1 CDS Shewana3_1711 NC_008577.1 2015520 2016713 D TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: son:SO1931 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase); 2-oxoglutarate dehydrogenase E2 component 2015520..2016713 Shewanella sp. ANA-3 4479544 YP_869351.1 CDS sucC NC_008577.1 2016832 2017998 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 2016832..2017998 Shewanella sp. ANA-3 4479545 YP_869352.1 CDS Shewana3_1713 NC_008577.1 2017998 2018870 D TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: son:SO1933 succinyl-CoA synthetase alpha chain; succinyl-CoA synthetase subunit alpha 2017998..2018870 Shewanella sp. ANA-3 4479546 YP_869353.1 CDS Shewana3_1714 NC_008577.1 2019250 2019657 D PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: son:SO1935 regulator of nucleoside diphosphate kinase; GreA/GreB family elongation factor 2019250..2019657 Shewanella sp. ANA-3 4479547 YP_869354.1 CDS Shewana3_1715 NC_008577.1 2019689 2020201 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1936 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2019689..2020201 Shewanella sp. ANA-3 4479548 YP_869355.1 CDS fur NC_008577.1 2020295 2020726 R negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator complement(2020295..2020726) Shewanella sp. ANA-3 4479549 YP_869356.1 CDS Shewana3_1717 NC_008577.1 2020983 2021726 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 2020983..2021726 Shewanella sp. ANA-3 4479550 YP_869357.1 CDS Shewana3_1718 NC_008577.1 2021750 2022214 D KEGG: son:SO1939 hypothetical protein; hypothetical protein 2021750..2022214 Shewanella sp. ANA-3 4479551 YP_869358.1 CDS Shewana3_1719 NC_008577.1 2022478 2022840 D KEGG: son:SO1940 hypothetical protein; hypothetical protein 2022478..2022840 Shewanella sp. ANA-3 4479552 YP_869359.1 CDS Shewana3_1720 NC_008577.1 2022967 2023914 D TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein, CorA family protein; KEGG: son:SO1941 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 2022967..2023914 Shewanella sp. ANA-3 4479553 YP_869360.1 CDS Shewana3_1721 NC_008577.1 2023995 2025257 R KEGG: son:SO1942 HDIG domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(2023995..2025257) Shewanella sp. ANA-3 4479554 YP_869361.1 CDS Shewana3_1722 NC_008577.1 2025374 2026069 D SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: son:SO1944 hypothetical protein; prolyl 4-hydroxylase subunit alpha 2025374..2026069 Shewanella sp. ANA-3 4479555 YP_869362.1 CDS Shewana3_1723 NC_008577.1 2026085 2027434 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO1945 sensor protein PhoQ; ATPase domain-containing protein complement(2026085..2027434) Shewanella sp. ANA-3 4479556 YP_869363.1 CDS Shewana3_1724 NC_008577.1 2027425 2028108 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO1946 transcriptional regulatory protein PhoP; two component transcriptional regulator complement(2027425..2028108) Shewanella sp. ANA-3 4479557 YP_869364.1 CDS Shewana3_1725 NC_008577.1 2028273 2028620 R KEGG: son:SO1947 hypothetical protein; hypothetical protein complement(2028273..2028620) Shewanella sp. ANA-3 4479558 YP_869365.1 CDS Shewana3_1726 NC_008577.1 2028777 2030090 R PFAM: sodium:dicarboxylate symporter; KEGG: son:SO1948 sodium:dicarboxylate symporter family protein; sodium:dicarboxylate symporter complement(2028777..2030090) Shewanella sp. ANA-3 4479559 YP_869366.1 CDS Shewana3_1727 NC_008577.1 2030311 2033985 D PFAM: Ig domain protein, group 1 domain protein; KEGG: son:SO1949 invasin domain protein; Ig domain-containing protein 2030311..2033985 Shewanella sp. ANA-3 4479560 YP_869367.1 CDS Shewana3_1728 NC_008577.1 2034074 2035408 R catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase complement(2034074..2035408) Shewanella sp. ANA-3 4479561 YP_869368.1 CDS Shewana3_1729 NC_008577.1 2035692 2038376 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 2035692..2038376 Shewanella sp. ANA-3 4479562 YP_869369.1 CDS Shewana3_1730 NC_008577.1 2038597 2039376 R KEGG: son:SO2650 hypothetical protein; hypothetical protein complement(2038597..2039376) Shewanella sp. ANA-3 4479563 YP_869370.1 CDS cysB NC_008577.1 2039604 2040578 D LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 2039604..2040578 Shewanella sp. ANA-3 4479564 YP_869371.1 CDS Shewana3_1732 NC_008577.1 2040660 2041322 R PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: son:SO2648 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator complement(2040660..2041322) Shewanella sp. ANA-3 4479565 YP_869372.1 CDS Shewana3_1733 NC_008577.1 2041544 2041975 R PFAM: thioesterase superfamily protein; KEGG: son:SO2647 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein complement(2041544..2041975) Shewanella sp. ANA-3 4479566 YP_869373.1 CDS Shewana3_1734 NC_008577.1 2042126 2043190 R tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2042126..2043190) Shewanella sp. ANA-3 4479567 YP_869374.1 CDS Shewana3_1735 NC_008577.1 2043372 2044184 R PFAM: protein of unknown function DUF299; KEGG: son:SO2645 hypothetical protein; hypothetical protein complement(2043372..2044184) Shewanella sp. ANA-3 4479568 YP_869375.1 CDS Shewana3_1736 NC_008577.1 2044309 2046678 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2044309..2046678 Shewanella sp. ANA-3 4479569 YP_869376.1 CDS Shewana3_1737 NC_008577.1 2046778 2049819 D PFAM: FAD linked oxidase domain protein; KEGG: son:SO2643 oxidoreductase, FAD-binding, putative; FAD linked oxidase domain-containing protein 2046778..2049819 Shewanella sp. ANA-3 4479570 YP_869377.1 CDS Shewana3_1738 NC_008577.1 2049908 2050396 D KEGG: son:SO2642 hypothetical protein; hypothetical protein 2049908..2050396 Shewanella sp. ANA-3 4479571 YP_869378.1 CDS Shewana3_1739 NC_008577.1 2050535 2050966 D PFAM: regulatory protein, MarR; KEGG: son:SO2640 transcriptional regulator, MarR family; MarR family transcriptional regulator 2050535..2050966 Shewanella sp. ANA-3 4479572 YP_869379.1 CDS Shewana3_1740 NC_008577.1 2051257 2055042 D PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: sco:SCO0432 probable secreted peptidase; peptidase S8/S53 subtilisin kexin sedolisin 2051257..2055042 Shewanella sp. ANA-3 4479573 YP_869380.1 CDS Shewana3_1741 NC_008577.1 2055120 2055467 R KEGG: son:SO2639 hypothetical protein; hypothetical protein complement(2055120..2055467) Shewanella sp. ANA-3 4479574 YP_869381.1 CDS Shewana3_1742 NC_008577.1 2055662 2056696 R PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: son:SO2638 leucine dehydrogenase; leucine dehydrogenase complement(2055662..2056696) Shewanella sp. ANA-3 4479575 YP_869382.1 CDS Shewana3_1743 NC_008577.1 2056976 2057434 D KEGG: son:SO2637 hypothetical protein; hypothetical protein 2056976..2057434 Shewanella sp. ANA-3 4479576 YP_869383.1 CDS Shewana3_1744 NC_008577.1 2057531 2058670 R PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: son:SO2636 hypothetical protein; cupin 4 family protein complement(2057531..2058670) Shewanella sp. ANA-3 4479577 YP_869384.1 CDS Shewana3_1745 NC_008577.1 2058797 2060167 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(2058797..2060167) Shewanella sp. ANA-3 4479578 YP_869385.1 CDS Shewana3_1746 NC_008577.1 2060197 2060814 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(2060197..2060814) Shewanella sp. ANA-3 4479579 YP_869386.1 CDS mnmA NC_008577.1 2060818 2061936 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(2060818..2061936) Shewanella sp. ANA-3 4479580 YP_869387.1 CDS Shewana3_1748 NC_008577.1 2062158 2062649 R PFAM: NUDIX hydrolase; KEGG: son:SO2631 MutT/nudix family protein; NUDIX hydrolase complement(2062158..2062649) Shewanella sp. ANA-3 4479581 YP_869388.1 CDS Shewana3_1749 NC_008577.1 2062723 2063532 R TIGRFAM: Pseudouridine synthase, Rsu; PFAM: pseudouridine synthase; KEGG: cps:CPS_2898 ribosomal large subunit pseudouridine synthase E; ribosomal large subunit pseudouridine synthase E complement(2062723..2063532) Shewanella sp. ANA-3 4479582 YP_869389.1 CDS Shewana3_1750 NC_008577.1 2063884 2066109 D TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; KEGG: son:SO2629 isocitrate dehydrogenase, NADP-dependent; isocitrate dehydrogenase 2063884..2066109 Shewanella sp. ANA-3 4479583 YP_869390.1 CDS Shewana3_1751 NC_008577.1 2066259 2066465 R cold-shock DNA-binding protein family protein complement(2066259..2066465) Shewanella sp. ANA-3 4478638 YP_869391.1 CDS clpS NC_008577.1 2066659 2066967 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2066659..2066967 Shewanella sp. ANA-3 4478639 YP_869392.1 CDS Shewana3_1753 NC_008577.1 2067010 2069277 D KEGG: son:SO2626 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 2067010..2069277 Shewanella sp. ANA-3 4478640 YP_869393.1 CDS infA NC_008577.1 2069381 2069599 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(2069381..2069599) Shewanella sp. ANA-3 4478641 YP_869394.1 CDS Shewana3_1755 NC_008577.1 2069682 2070398 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(2069682..2070398) Shewanella sp. ANA-3 4478642 YP_869395.1 CDS aat NC_008577.1 2070388 2071098 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(2070388..2071098) Shewanella sp. ANA-3 4478643 YP_869396.1 CDS Shewana3_1757 NC_008577.1 2071180 2071623 D PFAM: 17 kDa surface antigen; KEGG: son:SO2622 hypothetical protein; 17 kDa surface antigen 2071180..2071623 Shewanella sp. ANA-3 4478644 YP_869397.1 CDS Shewana3_1758 NC_008577.1 2071684 2072436 D PFAM: protein of unknown function DUF34; KEGG: son:SO2621 conserved hypothetical protein TIGR00486; hypothetical protein 2071684..2072436 Shewanella sp. ANA-3 4478645 YP_869398.1 CDS Shewana3_1759 NC_008577.1 2072546 2073502 R KEGG: son:SO2620 hypothetical protein; hypothetical protein complement(2072546..2073502) Shewanella sp. ANA-3 4478646 YP_869399.1 CDS metG NC_008577.1 2073887 2075917 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(2073887..2075917) Shewanella sp. ANA-3 4478647 YP_869400.1 CDS Shewana3_1761 NC_008577.1 2076078 2077193 D KEGG: son:SO2618 ATP-binding protein, Mrp/Nbp35 family; ATP-binding Mrp/Nbp35 family protein 2076078..2077193 Shewanella sp. ANA-3 4478648 YP_869401.1 CDS Shewana3_1762 NC_008577.1 2077205 2077843 D functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2077205..2077843 Shewanella sp. ANA-3 4478649 YP_869402.1 CDS dcd NC_008577.1 2077873 2078454 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 2077873..2078454 Shewanella sp. ANA-3 4478650 YP_869403.1 CDS Shewana3_1764 NC_008577.1 2078460 2079269 D KEGG: son:SO2615 4-amino-4-deoxychorismate lyase; aminodeoxychorismate lyase apoprotein 2078460..2079269 Shewanella sp. ANA-3 4478651 YP_869404.1 CDS Shewana3_1765 NC_008577.1 2079266 2080276 D TIGRFAM: Aminodeoxychorismate lyase; KEGG: son:SO2614 conserved hypothetical protein TIGR00247; aminodeoxychorismate lyase 2079266..2080276 Shewanella sp. ANA-3 4478652 YP_869405.1 CDS tmk NC_008577.1 2080273 2080902 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 2080273..2080902 Shewanella sp. ANA-3 4478653 YP_869406.1 CDS Shewana3_1767 NC_008577.1 2080896 2081852 D TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: son:SO2612 DNA polymerase III, delta prime subunit; DNA polymerase III subunit delta' 2080896..2081852 Shewanella sp. ANA-3 4478654 YP_869407.1 CDS Shewana3_1768 NC_008577.1 2081859 2082185 D KEGG: son:SO2611 type IV pilus biogenesis protein pilZ; type IV pilus biogenesis protein pilZ 2081859..2082185 Shewanella sp. ANA-3 4478655 YP_869408.1 CDS Shewana3_1769 NC_008577.1 2082538 2083338 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: son:SO2610 hydrolase, TatD family; TatD family hydrolase 2082538..2083338 Shewanella sp. ANA-3 4478656 YP_869409.1 CDS yebU NC_008577.1 2083636 2085168 R in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF complement(2083636..2085168) Shewanella sp. ANA-3 4478657 YP_869410.1 CDS Shewana3_1771 NC_008577.1 2085231 2086457 D PFAM: nucleoside recognition domain protein; KEGG: son:SO2607 spore maturation protein A-related protein; nucleoside recognition domain-containing protein 2085231..2086457 Shewanella sp. ANA-3 4478658 YP_869411.1 CDS Shewana3_1772 NC_008577.1 2086673 2089309 R PFAM: Mammalian cell entry related domain protein; KEGG: son:SO2606 PqiB family protein; hypothetical protein complement(2086673..2089309) Shewanella sp. ANA-3 4478659 YP_869412.1 CDS Shewana3_1773 NC_008577.1 2089296 2089913 R PFAM: Paraquat-inducible protein A; KEGG: ppr:PBPRA1925 hypothetical uncharacterized paraquat-inducible protein A; paraquat-inducible protein A complement(2089296..2089913) Shewanella sp. ANA-3 4478660 YP_869413.1 CDS Shewana3_1774 NC_008577.1 2089915 2090550 R PFAM: Paraquat-inducible protein A; KEGG: son:SO2604.1 hypothetical protein; paraquat-inducible protein A complement(2089915..2090550) Shewanella sp. ANA-3 4478661 YP_869414.1 CDS Shewana3_1775 NC_008577.1 2090757 2091056 D PFAM: YebG family protein; KEGG: son:SO2604 hypothetical protein; hypothetical protein 2090757..2091056 Shewanella sp. ANA-3 4478662 YP_869415.1 CDS Shewana3_1776 NC_008577.1 2091072 2091530 D PFAM: GAF domain protein; KEGG: son:SO2603 GAF domain-containing protein; putative GAF sensor protein 2091072..2091530 Shewanella sp. ANA-3 4478663 YP_869416.1 CDS Shewana3_1777 NC_008577.1 2091806 2092450 D affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector 2091806..2092450 Shewanella sp. ANA-3 4478664 YP_869417.1 CDS Shewana3_1778 NC_008577.1 2092479 2094530 D Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 2092479..2094530 Shewanella sp. ANA-3 4478665 YP_869418.1 CDS pepN NC_008577.1 2094616 2097165 D TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO2600 aminopeptidase N; aminopeptidase N 2094616..2097165 Shewanella sp. ANA-3 4478666 YP_869419.1 CDS Shewana3_1780 NC_008577.1 2097681 2097899 D KEGG: son:SO2598 hypothetical protein; hypothetical protein 2097681..2097899 Shewanella sp. ANA-3 4478667 YP_869420.1 CDS Shewana3_1781 NC_008577.1 2098235 2100277 D PFAM: protein of unknown function DUF1302; KEGG: son:SO2597 hypothetical protein; hypothetical protein 2098235..2100277 Shewanella sp. ANA-3 4478668 YP_869421.1 CDS Shewana3_1782 NC_008577.1 2100290 2101654 D PFAM: protein of unknown function DUF1329; KEGG: son:SO2596 hypothetical protein; hypothetical protein 2100290..2101654 Shewanella sp. ANA-3 4478669 YP_869422.1 CDS Shewana3_1783 NC_008577.1 2101710 2102720 D KEGG: son:SO2595 BNR repeat protein; BNR repeat-containing protein 2101710..2102720 Shewanella sp. ANA-3 4478670 YP_869423.1 CDS Shewana3_1784 NC_008577.1 2102752 2105067 D KEGG: son:SO2594 hypothetical protein; hypothetical protein 2102752..2105067 Shewanella sp. ANA-3 4478671 YP_869424.1 CDS Shewana3_1785 NC_008577.1 2105333 2110177 D PFAM: NAD-glutamate dehydrogenase; KEGG: son:SO2593 hypothetical protein; glutamate dehydrogenase 2105333..2110177 Shewanella sp. ANA-3 4478672 YP_869425.1 CDS Shewana3_1786 NC_008577.1 2110240 2111259 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2110240..2111259 Shewanella sp. ANA-3 4477474 YP_869426.1 CDS Shewana3_1787 NC_008577.1 2111472 2112005 D PFAM: protein of unknown function DUF1379; KEGG: son:SO2591 hypothetical protein; hypothetical protein 2111472..2112005 Shewanella sp. ANA-3 4477475 YP_869427.1 CDS Shewana3_1788 NC_008577.1 2112522 2115122 R PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: son:SO2136 aldehyde-alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase complement(2112522..2115122) Shewanella sp. ANA-3 4477476 YP_869428.1 CDS Shewana3_1789 NC_008577.1 2115440 2116072 D PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: son:SO2137 multiple antibiotic resistance protein; hypothetical protein 2115440..2116072 Shewanella sp. ANA-3 4477477 YP_869429.1 CDS Shewana3_1790 NC_008577.1 2116330 2118324 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: cps:CPS_1937 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2116330..2118324 Shewanella sp. ANA-3 4477478 YP_869430.1 CDS Shewana3_1791 NC_008577.1 2118970 2120205 D PFAM: phage integrase family protein; KEGG: vvy:VV2262 phage integrase; phage integrase family protein 2118970..2120205 Shewanella sp. ANA-3 4477480 YP_869431.1 CDS Shewana3_1792 NC_008577.1 2120257 2121144 D PFAM: protein of unknown function DUF86; KEGG: son:SO1440 hypothetical protein; hypothetical protein 2120257..2121144 Shewanella sp. ANA-3 4477481 YP_869432.1 CDS Shewana3_1793 NC_008577.1 2121390 2122307 D KEGG: son:SO1441 hypothetical protein; hypothetical protein 2121390..2122307 Shewanella sp. ANA-3 4477482 YP_869433.1 CDS Shewana3_1794 NC_008577.1 2122846 2124315 D KEGG: son:SO1442 hypothetical protein; hypothetical protein 2122846..2124315 Shewanella sp. ANA-3 4477483 YP_869434.1 CDS Shewana3_1795 NC_008577.1 2124630 2125307 D KEGG: son:SO1443 hypothetical protein; hypothetical protein 2124630..2125307 Shewanella sp. ANA-3 4477484 YP_869435.1 CDS Shewana3_1796 NC_008577.1 2125453 2125746 R PFAM: plasmid stabilization system; KEGG: son:SO1444 hypothetical protein; plasmid stabilization system protein complement(2125453..2125746) Shewanella sp. ANA-3 4477485 YP_869436.1 CDS Shewana3_1797 NC_008577.1 2125734 2126018 R PFAM: CopG domain protein DNA-binding domain protein; KEGG: son:SO1445 transcriptional regulator, CopG family; CopG family transcriptional regulator complement(2125734..2126018) Shewanella sp. ANA-3 4477486 YP_869437.1 CDS Shewana3_1798 NC_008577.1 2126305 2127027 R KEGG: son:SO1447 retinol acyltransferase domain protein; retinol acyltransferase domain-containing protein complement(2126305..2127027) Shewanella sp. ANA-3 4477487 YP_869438.1 CDS Shewana3_1799 NC_008577.1 2127115 2127729 R PFAM: phage integrase family protein; KEGG: son:SO1448 site-specific recombinase, phage integrase family; phage integrase family protein complement(2127115..2127729) Shewanella sp. ANA-3 4477488 YP_869439.1 CDS Shewana3_1800 NC_008577.1 2127790 2128197 R KEGG: son:SO1450 hypothetical protein; hypothetical protein complement(2127790..2128197) Shewanella sp. ANA-3 4477489 YP_869440.1 CDS Shewana3_1801 NC_008577.1 2128387 2128800 R KEGG: son:SO1451 hypothetical protein; hypothetical protein complement(2128387..2128800) Shewanella sp. ANA-3 4477490 YP_869441.1 CDS Shewana3_1802 NC_008577.1 2129045 2129401 R PFAM: YagBYeeUYfjZ family protein; KEGG: son:SO1453 hypothetical protein; hypothetical protein complement(2129045..2129401) Shewanella sp. ANA-3 4477491 YP_869442.1 CDS Shewana3_1803 NC_008577.1 2129515 2129877 R KEGG: son:SO1454 hypothetical protein; hypothetical protein complement(2129515..2129877) Shewanella sp. ANA-3 4477492 YP_869443.1 CDS Shewana3_1804 NC_008577.1 2129918 2130424 R PFAM: DNA repair protein RadC; KEGG: vfi:VFA0522 DNA repair protein RadC; DNA repair protein RadC complement(2129918..2130424) Shewanella sp. ANA-3 4477493 YP_869444.1 CDS Shewana3_1805 NC_008577.1 2130760 2131212 D PFAM: regulatory protein, MerR; KEGG: vfi:VF0782 transcriptional regulator, MerR family; MerR family transcriptional regulator 2130760..2131212 Shewanella sp. ANA-3 4477494 YP_869445.1 CDS Shewana3_1806 NC_008577.1 2131190 2132206 D PFAM: Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: ana:alr4412 unknown protein; vault protein inter-alpha-trypsin subunit 2131190..2132206 Shewanella sp. ANA-3 4477495 YP_869446.1 CDS Shewana3_1807 NC_008577.1 2132215 2133363 D KEGG: xla:379653 hypothetical protein MGC68953 Pfam: VIT VWA GBP_C PROSITE: LIPOYL HEMOPEXIN VWFA; hypothetical protein 2132215..2133363 Shewanella sp. ANA-3 4477496 YP_869447.1 CDS Shewana3_1808 NC_008577.1 2133981 2134688 D KEGG: sec:SC0010 positive regulator for sigma H (sigma 32) promoters, permitting growth at high temperature; hypothetical protein 2133981..2134688 Shewanella sp. ANA-3 4477497 YP_869448.1 CDS Shewana3_1809 NC_008577.1 2134712 2135677 D hypothetical protein 2134712..2135677 Shewanella sp. ANA-3 4477498 YP_869449.1 CDS Shewana3_1810 NC_008577.1 2135797 2136054 R KEGG: son:SO1455 DNA repair protein, RadC family; hypothetical protein complement(2135797..2136054) Shewanella sp. ANA-3 4477499 YP_869450.1 CDS Shewana3_1811 NC_008577.1 2136712 2138136 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: hch:HCH_05030 sigma 54-dependent transcriptional activator; sigma-54 dependent trancsriptional regulator 2136712..2138136 Shewanella sp. ANA-3 4477500 YP_869451.1 CDS Shewana3_1812 NC_008577.1 2138213 2139742 D PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: bth:BT0335 putative ATPase; ATPase 2138213..2139742 Shewanella sp. ANA-3 4477501 YP_869452.1 CDS Shewana3_1813 NC_008577.1 2139735 2141318 D SMART: von Willebrand factor, type A; KEGG: yps:YPTB0004 hypothetical protein; von Willebrand factor type A domain-containing protein 2139735..2141318 Shewanella sp. ANA-3 4477502 YP_869453.1 CDS Shewana3_1814 NC_008577.1 2141332 2141865 D KEGG: noc:Noc_0407 hypothetical protein; hypothetical protein 2141332..2141865 Shewanella sp. ANA-3 4477503 YP_869454.1 CDS Shewana3_1815 NC_008577.1 2142170 2142850 D hypothetical protein 2142170..2142850 Shewanella sp. ANA-3 4477504 YP_869455.1 CDS Shewana3_1816 NC_008577.1 2142947 2143714 D KEGG: sde:Sde_2759 hypothetical protein; hypothetical protein 2142947..2143714 Shewanella sp. ANA-3 4477505 YP_869456.1 CDS Shewana3_1817 NC_008577.1 2143719 2144261 D KEGG: mta:Moth_2243 hypothetical protein; hypothetical protein 2143719..2144261 Shewanella sp. ANA-3 4477506 YP_869457.1 CDS Shewana3_1818 NC_008577.1 2144277 2147750 D KEGG: sde:Sde_2757 hypothetical protein; hypothetical protein 2144277..2147750 Shewanella sp. ANA-3 4477507 YP_869458.1 CDS Shewana3_1819 NC_008577.1 2147878 2151342 D KEGG: sde:Sde_2756 hypothetical protein; hypothetical protein 2147878..2151342 Shewanella sp. ANA-3 4477508 YP_869459.1 CDS Shewana3_1820 NC_008577.1 2151348 2153036 D PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: eca:ECA3659 hypothetical protein; hypothetical protein 2151348..2153036 Shewanella sp. ANA-3 4477880 YP_869460.1 CDS Shewana3_1821 NC_008577.1 2153023 2155062 D KEGG: sde:Sde_2753 hypothetical protein; hypothetical protein 2153023..2155062 Shewanella sp. ANA-3 4477881 YP_869461.1 CDS Shewana3_1822 NC_008577.1 2155072 2155788 D PFAM: Zeta toxin family protein; KEGG: pha:PSHAa0327 hypothetical protein; zeta toxin family protein 2155072..2155788 Shewanella sp. ANA-3 4477882 YP_869462.1 CDS Shewana3_1823 NC_008577.1 2156003 2157856 R hypothetical protein complement(2156003..2157856) Shewanella sp. ANA-3 4477883 YP_869463.1 CDS Shewana3_1824 NC_008577.1 2157871 2159871 R glutathione synthase complement(2157871..2159871) Shewanella sp. ANA-3 4477884 YP_869464.1 CDS Shewana3_1825 NC_008577.1 2160481 2163678 D KEGG: pha:PSHAa2986 ATP-binding protein; ATPase-like protein 2160481..2163678 Shewanella sp. ANA-3 4477885 YP_869465.1 CDS Shewana3_1826 NC_008577.1 2163696 2164388 D hypothetical protein 2163696..2164388 Shewanella sp. ANA-3 4477886 YP_869466.1 CDS Shewana3_1827 NC_008577.1 2164599 2165444 D hypothetical protein 2164599..2165444 Shewanella sp. ANA-3 4477887 YP_869467.1 CDS Shewana3_1828 NC_008577.1 2165437 2166396 D hypothetical protein 2165437..2166396 Shewanella sp. ANA-3 4477888 YP_869468.1 CDS Shewana3_1829 NC_008577.1 2166520 2169438 D KEGG: dps:DP1989 hypothetical protein; hypothetical protein 2166520..2169438 Shewanella sp. ANA-3 4477889 YP_869469.1 CDS Shewana3_1830 NC_008577.1 2169657 2170193 D KEGG: nar:Saro_0348 hypothetical protein; hypothetical protein 2169657..2170193 Shewanella sp. ANA-3 4477890 YP_869470.1 CDS Shewana3_1831 NC_008577.1 2170630 2171913 R KEGG: hch:HCH_04712 diadenosine tetraphosphatase and related serine/threonine protein phosphatase; hypothetical protein complement(2170630..2171913) Shewanella sp. ANA-3 4477891 YP_869471.1 CDS Shewana3_1832 NC_008577.1 2173136 2174392 R PFAM: UMUC domain protein DNA-repair protein; KEGG: son:SOA0012 umuC protein; DNA-repair protein complement(2173136..2174392) Shewanella sp. ANA-3 4477892 YP_869472.1 CDS Shewana3_1833 NC_008577.1 2174380 2175204 R PFAM: peptidase S24, S26A and S26B; KEGG: son:SOA0013 umuD protein; putative prophage repressor complement(2174380..2175204) Shewanella sp. ANA-3 4477893 YP_869473.1 CDS Shewana3_1834 NC_008577.1 2175298 2175942 R PFAM: protein of unknown function DUF938; KEGG: son:SO2050 hypothetical protein; hypothetical protein complement(2175298..2175942) Shewanella sp. ANA-3 4477894 YP_869474.1 CDS Shewana3_1835 NC_008577.1 2176226 2177515 D PFAM: FAD dependent oxidoreductase; KEGG: son:SO2052 hypothetical oxidoreductase; FAD dependent oxidoreductase 2176226..2177515 Shewanella sp. ANA-3 4477895 YP_869475.1 CDS Shewana3_1836 NC_008577.1 2177603 2178484 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2053 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2177603..2178484) Shewanella sp. ANA-3 4477896 YP_869476.1 CDS Shewana3_1837 NC_008577.1 2178680 2179819 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO2054 alcohol dehydrogenase class III; alcohol dehydrogenase 2178680..2179819 Shewanella sp. ANA-3 4477897 YP_869477.1 CDS Shewana3_1838 NC_008577.1 2179947 2180786 D PFAM: putative esterase; KEGG: son:SO2055 esterase, putative; putative esterase 2179947..2180786 Shewanella sp. ANA-3 4477898 YP_869478.1 CDS Shewana3_1839 NC_008577.1 2181132 2181974 D PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: bta:537914 similar to Transmembrane protease, serine 3; peptidase S1 and S6, chymotrypsin/Hap 2181132..2181974 Shewanella sp. ANA-3 4477899 YP_869479.1 CDS Shewana3_1842 NC_008577.1 2182927 2183268 D KEGG: son:SO2061 hypothetical protein; hypothetical protein 2182927..2183268 Shewanella sp. ANA-3 4477901 YP_869480.1 CDS Shewana3_1843 NC_008577.1 2183421 2183771 R PFAM: Uncharacterized conserved protein UCP025560; KEGG: son:SO2062 hypothetical protein; hypothetical protein complement(2183421..2183771) Shewanella sp. ANA-3 4477902 YP_869481.1 CDS Shewana3_1844 NC_008577.1 2183796 2183996 R KEGG: son:SO2063 hypothetical protein; hypothetical protein complement(2183796..2183996) Shewanella sp. ANA-3 4477903 YP_869482.1 CDS Shewana3_1845 NC_008577.1 2184010 2187216 R KEGG: son:SO2064 hypothetical protein; hypothetical protein complement(2184010..2187216) Shewanella sp. ANA-3 4477904 YP_869483.1 CDS Shewana3_1846 NC_008577.1 2187474 2188661 R TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; KEGG: son:SO2065 tyrosine-specific transport protein; aromatic amino acid transporter complement(2187474..2188661) Shewanella sp. ANA-3 4477905 YP_869484.1 CDS Shewana3_1847 NC_008577.1 2189352 2190011 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase complement(2189352..2190011) Shewanella sp. ANA-3 4477906 YP_869485.1 CDS Shewana3_1848 NC_008577.1 2190056 2190829 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(2190056..2190829) Shewanella sp. ANA-3 4477907 YP_869486.1 CDS Shewana3_1849 NC_008577.1 2190811 2191548 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(2190811..2191548) Shewanella sp. ANA-3 4477908 YP_869487.1 CDS hisH NC_008577.1 2191578 2192228 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(2191578..2192228) Shewanella sp. ANA-3 4477909 YP_869488.1 CDS Shewana3_1851 NC_008577.1 2192374 2193465 R catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase complement(2192374..2193465) Shewanella sp. ANA-3 4477910 YP_869489.1 CDS Shewana3_1852 NC_008577.1 2193548 2194753 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(2193548..2194753) Shewanella sp. ANA-3 4477911 YP_869490.1 CDS hisD NC_008577.1 2194820 2196121 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(2194820..2196121) Shewanella sp. ANA-3 4477912 YP_869491.1 CDS hisG NC_008577.1 2196125 2197024 R long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase complement(2196125..2197024) Shewanella sp. ANA-3 4477913 YP_869492.1 CDS Shewana3_1855 NC_008577.1 2197684 2198511 R KEGG: son:SO2075 hypothetical protein; hypothetical protein complement(2197684..2198511) Shewanella sp. ANA-3 4477914 YP_869493.1 CDS Shewana3_1856 NC_008577.1 2198577 2198903 R KEGG: son:SO2076 hypothetical protein; hypothetical protein complement(2198577..2198903) Shewanella sp. ANA-3 4477915 YP_869494.1 CDS Shewana3_1857 NC_008577.1 2199022 2199402 R KEGG: son:SO2077 acyltransferase domain protein; acyltransferase domain-containing protein complement(2199022..2199402) Shewanella sp. ANA-3 4477916 YP_869495.1 CDS Shewana3_1858 NC_008577.1 2199562 2199903 R KEGG: son:SO2079 hypothetical protein; hypothetical protein complement(2199562..2199903) Shewanella sp. ANA-3 4477917 YP_869496.1 CDS Shewana3_1859 NC_008577.1 2200160 2202184 D SMART: helicase c2; KEGG: son:SO2081 ATP-dependent helicase, DinG family; helicase c2 2200160..2202184 Shewanella sp. ANA-3 4477918 YP_869497.1 CDS Shewana3_1860 NC_008577.1 2202241 2202759 D KEGG: son:SO2082 rod shape-determining-related protein; rod shape-determining-like protein 2202241..2202759 Shewanella sp. ANA-3 4477919 YP_869498.1 CDS Shewana3_1861 NC_008577.1 2202821 2204782 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ppr:PBPRB1825 hypothetical receptor; TonB-dependent receptor complement(2202821..2204782) Shewanella sp. ANA-3 4477920 YP_869499.1 CDS Shewana3_1862 NC_008577.1 2205283 2206800 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO2083 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2205283..2206800) Shewanella sp. ANA-3 4477921 YP_869500.1 CDS pheS NC_008577.1 2207235 2208254 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2207235..2208254 Shewanella sp. ANA-3 4477922 YP_869501.1 CDS pheT NC_008577.1 2208269 2210656 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2208269..2210656 Shewanella sp. ANA-3 4477923 YP_869502.1 CDS ihfA NC_008577.1 2210660 2210956 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2210660..2210956 Shewanella sp. ANA-3 4477924 YP_869503.1 CDS Shewana3_1866 NC_008577.1 2211053 2211991 D Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2211053..2211991 Shewanella sp. ANA-3 4477925 YP_869504.1 CDS Shewana3_1867 NC_008577.1 2212121 2212477 R TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis, HypA; KEGG: son:SO2089 hydrogenase expression/formation protein HypA; hydrogenase nickel incorporation protein HypA complement(2212121..2212477) Shewanella sp. ANA-3 4477926 YP_869505.1 CDS Shewana3_1868 NC_008577.1 2212477 2213496 R TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: son:SO2090 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE complement(2212477..2213496) Shewanella sp. ANA-3 4477927 YP_869506.1 CDS Shewana3_1869 NC_008577.1 2213489 2214628 R TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: son:SO2091 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD complement(2213489..2214628) Shewanella sp. ANA-3 4477928 YP_869507.1 CDS Shewana3_1870 NC_008577.1 2214687 2214932 R TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: son:SO2092 hydrogenase assembly chaperone hypC/hupF; hydrogenase assembly chaperone HypC/HupF complement(2214687..2214932) Shewanella sp. ANA-3 4477929 YP_869508.1 CDS Shewana3_1871 NC_008577.1 2214932 2215693 R TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: son:SO2093 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB complement(2214932..2215693) Shewanella sp. ANA-3 4477930 YP_869509.1 CDS Shewana3_1872 NC_008577.1 2215904 2218225 R TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: eca:ECA1964 putative molybdopterin oxidoreductase; oxidoreductase alpha (molybdopterin) subunit complement(2215904..2218225) Shewanella sp. ANA-3 4477931 YP_869510.1 CDS Shewana3_1873 NC_008577.1 2218209 2219069 R TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase, subunit FdhD; KEGG: pfo:Pfl_0280 formate dehydrogenase, subunit FdhD; formate dehydrogenase family accessory protein FdhD complement(2218209..2219069) Shewanella sp. ANA-3 4478181 YP_869511.1 CDS Shewana3_1874 NC_008577.1 2219231 2220109 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vpa:VPA0961 putative transcriptional regulator; LysR family transcriptional regulator 2219231..2220109 Shewanella sp. ANA-3 4478182 YP_869512.1 CDS Shewana3_1875 NC_008577.1 2220113 2222620 R TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain protein; zinc finger, HypF domain protein; KEGG: son:SO2094 hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF complement(2220113..2222620) Shewanella sp. ANA-3 4478183 YP_869513.1 CDS Shewana3_1876 NC_008577.1 2222692 2224542 R KEGG: son:SO2095 hypothetical protein; hypothetical protein complement(2222692..2224542) Shewanella sp. ANA-3 4478184 YP_869514.1 CDS Shewana3_1877 NC_008577.1 2224523 2225101 R TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52, hydrogen uptake protein; KEGG: son:SO2096 hydrogenase expression/formation protein; hydrogenase expression/formation protein complement(2224523..2225101) Shewanella sp. ANA-3 4478185 YP_869515.1 CDS Shewana3_1878 NC_008577.1 2225109 2225783 R TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: son:SO2097 quinone-reactive Ni/Fe hydrogenase, cytochrome b subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit complement(2225109..2225783) Shewanella sp. ANA-3 4478186 YP_869516.1 CDS Shewana3_1879 NC_008577.1 2225805 2227508 R PFAM: nickel-dependent hydrogenase, large subunit; KEGG: son:SO2098 hydrogenase large chain; nickel-dependent hydrogenase, large subunit complement(2225805..2227508) Shewanella sp. ANA-3 4478187 YP_869517.1 CDS Shewana3_1880 NC_008577.1 2227512 2228648 R TIGRFAM: hydrogenase (NiFe) small subunit HydA; Twin-arginine translocation pathway signal; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein; KEGG: son:SO2099 hydrogenase small chain; hydrogenase (NiFe) small subunit HydA complement(2227512..2228648) Shewanella sp. ANA-3 4478188 YP_869518.1 CDS Shewana3_1881 NC_008577.1 2228984 2229466 D PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: son:SO2100 thioredoxin family protein; redoxin domain-containing protein 2228984..2229466 Shewanella sp. ANA-3 4478189 YP_869519.1 CDS Shewana3_1882 NC_008577.1 2229470 2229691 D KEGG: son:SO2101 lipoprotein, putative; putative lipoprotein 2229470..2229691 Shewanella sp. ANA-3 4478190 YP_869520.1 CDS Shewana3_1883 NC_008577.1 2229785 2231131 D KEGG: son:SO2102 hypothetical protein; hypothetical protein 2229785..2231131 Shewanella sp. ANA-3 4478191 YP_869521.1 CDS Shewana3_1884 NC_008577.1 2231229 2232131 D PFAM: ApbE family lipoprotein; KEGG: son:SO2103 ApbE family protein; ApbE family lipoprotein 2231229..2232131 Shewanella sp. ANA-3 4478192 YP_869522.1 CDS Shewana3_1885 NC_008577.1 2232142 2232801 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2104 DNA-binding response regulator YgiX, putative; two component transcriptional regulator 2232142..2232801 Shewanella sp. ANA-3 4478193 YP_869523.1 CDS Shewana3_1886 NC_008577.1 2232915 2234309 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2105 sensor protein YgiY, putative; ATPase domain-containing protein 2232915..2234309 Shewanella sp. ANA-3 4478194 YP_869524.1 CDS mdoG NC_008577.1 2234754 2236391 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 2234754..2236391 Shewanella sp. ANA-3 4478195 YP_869525.1 CDS Shewana3_1888 NC_008577.1 2236415 2238598 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 2236415..2238598 Shewanella sp. ANA-3 4478196 YP_869526.1 CDS Shewana3_1889 NC_008577.1 2238829 2240505 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO2109 hypothetical protein; peptidoglycan binding domain-containing protein 2238829..2240505 Shewanella sp. ANA-3 4478197 YP_869527.1 CDS Shewana3_1890 NC_008577.1 2240629 2241177 D PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: son:SO2110 hypothetical protein; hypothetical protein 2240629..2241177 Shewanella sp. ANA-3 4478198 YP_869528.1 CDS Shewana3_1891 NC_008577.1 2241128 2241562 R KEGG: son:SO2111 hypothetical protein; hypothetical protein complement(2241128..2241562) Shewanella sp. ANA-3 4478199 YP_869529.1 CDS Shewana3_1892 NC_008577.1 2241875 2242162 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2241875..2242162 Shewanella sp. ANA-3 4478200 YP_869530.1 CDS Shewana3_1893 NC_008577.1 2242272 2246621 R PFAM: protein of unknown function DUF490; KEGG: son:SO2113 hypothetical protein; hypothetical protein complement(2242272..2246621) Shewanella sp. ANA-3 4478201 YP_869531.1 CDS Shewana3_1894 NC_008577.1 2246618 2248393 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: son:SO2114 hypothetical protein; surface antigen (D15) complement(2246618..2248393) Shewanella sp. ANA-3 4478202 YP_869532.1 CDS Shewana3_1895 NC_008577.1 2248595 2249626 D PFAM: peptidase T2, asparaginase 2; KEGG: son:SO2115 asparaginase family protein; peptidase T2, asparaginase 2 2248595..2249626 Shewanella sp. ANA-3 4478203 YP_869533.1 CDS Shewana3_1896 NC_008577.1 2249876 2250292 D PFAM: CBS domain containing protein; KEGG: son:SO2228 CBS domain protein; signal transduction protein 2249876..2250292 Shewanella sp. ANA-3 4478204 YP_869534.1 CDS Shewana3_1897 NC_008577.1 2250421 2254302 D KEGG: son:SO2229 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD/DEAH box helicase domain protein; ATP-dependent helicase HrpA 2250421..2254302 Shewanella sp. ANA-3 4478205 YP_869535.1 CDS Shewana3_1898 NC_008577.1 2255007 2255165 D hypothetical protein 2255007..2255165 Shewanella sp. ANA-3 4478206 YP_869536.1 CDS Shewana3_1899 NC_008577.1 2255210 2255467 D PFAM: NapD family protein; KEGG: son:SO0849 napD protein; NapD family protein 2255210..2255467 Shewanella sp. ANA-3 4478207 YP_869537.1 CDS Shewana3_1900 NC_008577.1 2255470 2257959 D periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 2255470..2257959 Shewanella sp. ANA-3 4478208 YP_869538.1 CDS Shewana3_1901 NC_008577.1 2257970 2258455 D PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: ppr:PBPRA2029 hypothetical periplasmic nitrate reductase small subunit precursor; periplasmic nitrate reductase subunit NapB 2257970..2258455 Shewanella sp. ANA-3 4478209 YP_869539.1 CDS Shewana3_1902 NC_008577.1 2258464 2259051 D TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; KEGG: pae:PA1172 cytochrome c-type protein NapC; periplasmic nitrate reductase subunit NapC 2258464..2259051 Shewanella sp. ANA-3 4478210 YP_869540.1 CDS Shewana3_1903 NC_008577.1 2259683 2261605 D PFAM: restriction endonuclease; restriction endonuclease 2259683..2261605 Shewanella sp. ANA-3 4478211 YP_869541.1 CDS Shewana3_1904 NC_008577.1 2261679 2262101 D PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_06505 histone acetyltransferase HPA2/related acetyltransferase; N-acetyltransferase GCN5 2261679..2262101 Shewanella sp. ANA-3 4478212 YP_869542.1 CDS Shewana3_1905 NC_008577.1 2262462 2262698 R KEGG: son:SO2479 hypothetical protein; hypothetical protein complement(2262462..2262698) Shewanella sp. ANA-3 4478213 YP_869543.1 CDS Shewana3_1906 NC_008577.1 2262727 2263464 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(2262727..2263464) Shewanella sp. ANA-3 4478214 YP_869544.1 CDS Shewana3_1907 NC_008577.1 2263547 2264617 R PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO2477 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase complement(2263547..2264617) Shewanella sp. ANA-3 4478215 YP_869545.1 CDS Shewana3_1908 NC_008577.1 2264637 2265824 R PFAM: aminotransferase, class V; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO2476 polysaccharide biosynthesis protein; DegT/DnrJ/EryC1/StrS aminotransferase complement(2264637..2265824) Shewanella sp. ANA-3 4478216 YP_869546.1 CDS Shewana3_1909 NC_008577.1 2266263 2266868 R PFAM: carbonic anhydrase; KEGG: son:SO2474 carbonic anhydrase family protein; carbonic anhydrase complement(2266263..2266868) Shewanella sp. ANA-3 4478217 YP_869547.1 CDS Shewana3_1910 NC_008577.1 2267022 2267852 R PFAM: alpha/beta hydrolase fold; KEGG: son:SO2473 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold domain-containing protein complement(2267022..2267852) Shewanella sp. ANA-3 4478218 YP_869548.1 CDS Shewana3_1911 NC_008577.1 2267918 2268706 R PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: son:SO2472 D-alanyl-D-alanine carboxypeptidase-related protein; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins complement(2267918..2268706) Shewanella sp. ANA-3 4478219 YP_869549.1 CDS Shewana3_1912 NC_008577.1 2268700 2269845 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(2268700..2269845) Shewanella sp. ANA-3 4478220 YP_869550.1 CDS Shewana3_1913 NC_008577.1 2269842 2270246 R PFAM: arsenate reductase and related; KEGG: son:SO2470 hypothetical protein; arsenate reductase-like protein complement(2269842..2270246) Shewanella sp. ANA-3 4478221 YP_869551.1 CDS Shewana3_1914 NC_008577.1 2270695 2273367 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: vvy:VV0250 outer membrane receptor protein; TonB-dependent receptor complement(2270695..2273367) Shewanella sp. ANA-3 4478222 YP_869552.1 CDS Shewana3_1915 NC_008577.1 2274133 2275044 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vpa:VPA0365 putative transcriptional regulator protein; LysR family transcriptional regulator 2274133..2275044 Shewanella sp. ANA-3 4478223 YP_869553.1 CDS Shewana3_1916 NC_008577.1 2275127 2276239 D KEGG: vpa:VPA0364 putative efflux protein; putative efflux protein 2275127..2276239 Shewanella sp. ANA-3 4478224 YP_869554.1 CDS Shewana3_1917 NC_008577.1 2276236 2279343 D PFAM: acriflavin resistance protein; KEGG: vpa:VPA0363 putative efflux protein; acriflavin resistance protein 2276236..2279343 Shewanella sp. ANA-3 4478225 YP_869555.1 CDS Shewana3_1918 NC_008577.1 2279346 2280815 D PFAM: outer membrane efflux protein; KEGG: vpa:VPA0362 putative outer membrane protein; outer membrane efflux protein 2279346..2280815 Shewanella sp. ANA-3 4478226 YP_869556.1 CDS Shewana3_1919 NC_008577.1 2280935 2282218 D TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: ppr:PBPRB1161 putative paraquat-inducible protein A; PqiA family integral membrane protein 2280935..2282218 Shewanella sp. ANA-3 4478227 YP_869557.1 CDS Shewana3_1920 NC_008577.1 2282229 2283893 D PFAM: Mammalian cell entry related domain protein; KEGG: ppr:PBPRB1160 putative paraquat-inducible protein B; hypothetical protein 2282229..2283893 Shewanella sp. ANA-3 4478228 YP_869558.1 CDS Shewana3_1921 NC_008577.1 2283895 2284494 D PFAM: protein of unknown function DUF330; KEGG: noc:Noc_2723 protein of unknown function DUF330; hypothetical protein 2283895..2284494 Shewanella sp. ANA-3 4478229 YP_869559.1 CDS Shewana3_1922 NC_008577.1 2284710 2286098 R PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: mag:amb4188 di- and tricarboxylate transporters; sodium/sulfate symporter complement(2284710..2286098) Shewanella sp. ANA-3 4478230 YP_869560.1 CDS Shewana3_1923 NC_008577.1 2286178 2286990 D PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: pae:PA3927 probable transcriptional regulator; AraC family transcriptional regulator 2286178..2286990 Shewanella sp. ANA-3 4478231 YP_869561.1 CDS Shewana3_1924 NC_008577.1 2287223 2289736 R TIGRFAM: glucan 1,4-alpha-glucosidase; PFAM: glycoside hydrolase 15-related; KEGG: son:SO2459 glucoamylase; glucan 1,4-alpha-glucosidase complement(2287223..2289736) Shewanella sp. ANA-3 4478232 YP_869562.1 CDS Shewana3_1925 NC_008577.1 2289868 2291463 R PFAM: major facilitator superfamily MFS_1; KEGG: son:SO2458 transporter, putative; major facilitator superfamily transporter complement(2289868..2291463) Shewanella sp. ANA-3 4478233 YP_869563.1 CDS Shewana3_1926 NC_008577.1 2292205 2292483 D PFAM: YCII-related; KEGG: son:SO2457 hypothetical protein; hypothetical protein 2292205..2292483 Shewanella sp. ANA-3 4479723 YP_869564.1 CDS Shewana3_1927 NC_008577.1 2292511 2292987 D PFAM: GCN5-related N-acetyltransferase; KEGG: vfi:VFA0653 IAA acetyltransferase; N-acetyltransferase GCN5 2292511..2292987 Shewanella sp. ANA-3 4479724 YP_869565.1 CDS Shewana3_1928 NC_008577.1 2293035 2293550 D hypothetical protein 2293035..2293550 Shewanella sp. ANA-3 4479725 YP_869566.1 CDS Shewana3_1929 NC_008577.1 2293756 2294205 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: ilo:IL2486 carboxymuconolactone decarboxylase family enzyme; alkylhydroperoxidase complement(2293756..2294205) Shewanella sp. ANA-3 4479726 YP_869567.1 CDS Shewana3_1930 NC_008577.1 2294242 2295132 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ilo:IL2485 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2294242..2295132) Shewanella sp. ANA-3 4479727 YP_869568.1 CDS Shewana3_1931 NC_008577.1 2295393 2297504 R KEGG: son:SO2450 alpha-glucosidase; alpha-glucosidase complement(2295393..2297504) Shewanella sp. ANA-3 4479728 YP_869569.1 CDS Shewana3_1932 NC_008577.1 2297754 2298578 D KEGG: son:SO2449 hypothetical protein; hypothetical protein 2297754..2298578 Shewanella sp. ANA-3 4479729 YP_869570.1 CDS Shewana3_1933 NC_008577.1 2298690 2299220 D PFAM: NUDIX hydrolase; KEGG: son:SO2448 MutT/nudix family protein; NUDIX hydrolase 2298690..2299220 Shewanella sp. ANA-3 4479730 YP_869571.1 CDS Shewana3_1934 NC_008577.1 2299251 2299934 R TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: son:SO2447 channel protein, hemolysin III family subfamily; hemolysin III family channel protein complement(2299251..2299934) Shewanella sp. ANA-3 4479731 YP_869572.1 CDS Shewana3_1935 NC_008577.1 2300304 2301413 D KEGG: son:SO2446 hypothetical protein; hypothetical protein 2300304..2301413 Shewanella sp. ANA-3 4479732 YP_869573.1 CDS Shewana3_1936 NC_008577.1 2301846 2304008 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2301846..2304008 Shewanella sp. ANA-3 4479733 YP_869574.1 CDS Shewana3_1937 NC_008577.1 2304011 2305693 D TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1; KEGG: son:SO2444 phosphomethylpyrimidine kinase/thiamine-phosphate pyrophosphorylase; thiamine-phosphate pyrophosphorylase 2304011..2305693 Shewanella sp. ANA-3 4479734 YP_869575.1 CDS Shewana3_1938 NC_008577.1 2305690 2306706 D PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: son:SO2443 thiF protein, putative; UBA/THIF-type NAD/FAD binding protein 2305690..2306706 Shewanella sp. ANA-3 4479735 YP_869576.1 CDS Shewana3_1939 NC_008577.1 2306703 2306906 D TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: son:SO2442 thiS protein, putative; thiamine biosynthesis protein ThiS 2306703..2306906 Shewanella sp. ANA-3 4479736 YP_869577.1 CDS thiG NC_008577.1 2306908 2307666 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2306908..2307666 Shewanella sp. ANA-3 4479737 YP_869578.1 CDS thiH NC_008577.1 2307669 2308784 D in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 2307669..2308784 Shewanella sp. ANA-3 4479738 YP_869579.1 CDS Shewana3_1942 NC_008577.1 2308896 2309159 D KEGG: son:SO2439.2 hypothetical methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 2308896..2309159 Shewanella sp. ANA-3 4479739 YP_869580.1 CDS Shewana3_1943 NC_008577.1 2309162 2311384 D KEGG: son:SO2439 SrpA-related protein; protein-glutamate O-methyltransferase 2309162..2311384 Shewanella sp. ANA-3 4479740 YP_869581.1 CDS Shewana3_1944 NC_008577.1 2311559 2312461 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2438 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2311559..2312461) Shewanella sp. ANA-3 4479741 YP_869582.1 CDS Shewana3_1945 NC_008577.1 2312635 2313834 R KEGG: vch:VCA0962 hypothetical protein; hypothetical protein complement(2312635..2313834) Shewanella sp. ANA-3 4479742 YP_869583.1 CDS Shewana3_1946 NC_008577.1 2313761 2315701 R KEGG: son:SO2437 hypothetical protein; response regulator receiver protein complement(2313761..2315701) Shewanella sp. ANA-3 4479743 YP_869584.1 CDS Shewana3_1947 NC_008577.1 2315676 2316620 R TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: vch:VC1160 hypothetical protein; alpha-L-glutamate ligase-like protein complement(2315676..2316620) Shewanella sp. ANA-3 4479744 YP_869585.1 CDS Shewana3_1948 NC_008577.1 2316620 2318128 R KEGG: ppr:PBPRA1107 hypothetical protein; hypothetical protein complement(2316620..2318128) Shewanella sp. ANA-3 4479745 YP_869586.1 CDS Shewana3_1949 NC_008577.1 2318340 2319161 R PFAM: protein of unknown function DUF785; KEGG: ppr:PBPRA1108 hypothetical protein; hypothetical protein complement(2318340..2319161) Shewanella sp. ANA-3 4479746 YP_869587.1 CDS Shewana3_1950 NC_008577.1 2319245 2320237 R TIGRFAM: putative methyltransferase; PFAM: methyltransferase, putative; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO2436 methyltransferase, putative; putative methyltransferase complement(2319245..2320237) Shewanella sp. ANA-3 4479747 YP_869588.1 CDS Shewana3_1951 NC_008577.1 2320234 2320992 R TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO2435 methyltransferase, putative; putative methyltransferase complement(2320234..2320992) Shewanella sp. ANA-3 4479748 YP_869589.1 CDS Shewana3_1952 NC_008577.1 2321114 2323927 D KEGG: son:SO2434 extracellular solute-binding proteins, family 3/GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein, family 3; diguanylate cyclase 2321114..2323927 Shewanella sp. ANA-3 4479749 YP_869590.1 CDS aspS NC_008577.1 2324112 2325887 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2324112..2325887 Shewanella sp. ANA-3 4479750 YP_869591.1 CDS Shewana3_1954 NC_008577.1 2326104 2326850 D PFAM: protein of unknown function DUF28; KEGG: son:SO2432 conserved hypothetical protein TIGR01033; hypothetical protein 2326104..2326850 Shewanella sp. ANA-3 4479751 YP_869592.1 CDS ruvC NC_008577.1 2327092 2327613 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2327092..2327613 Shewanella sp. ANA-3 4479752 YP_869593.1 CDS ruvA NC_008577.1 2327610 2328227 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2327610..2328227 Shewanella sp. ANA-3 4479753 YP_869594.1 CDS ruvB NC_008577.1 2328348 2329352 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2328348..2329352 Shewanella sp. ANA-3 4479754 YP_869595.1 CDS Shewana3_1958 NC_008577.1 2330327 2332888 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2427 TonB-dependent receptor, putative; TonB-dependent receptor 2330327..2332888 Shewanella sp. ANA-3 4479755 YP_869596.1 CDS Shewana3_1959 NC_008577.1 2333086 2333766 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2426 DNA-binding response regulator; two component transcriptional regulator 2333086..2333766 Shewanella sp. ANA-3 4479756 YP_869597.1 CDS Shewana3_1960 NC_008577.1 2333947 2335074 D PFAM: peptidase M14, carboxypeptidase A; KEGG: son:SO2424 zinc carboxypeptidase domain protein; peptidase M14, carboxypeptidase A 2333947..2335074 Shewanella sp. ANA-3 4479757 YP_869598.1 CDS Shewana3_1961 NC_008577.1 2335083 2335400 D KEGG: son:SO2423 hypothetical protein; hypothetical protein 2335083..2335400 Shewanella sp. ANA-3 4479415 YP_869599.1 CDS Shewana3_1962 NC_008577.1 2335397 2335678 D PFAM: protein of unknown function DUF1315; KEGG: son:SO2422 hypothetical protein; hypothetical protein 2335397..2335678 Shewanella sp. ANA-3 4479416 YP_869600.1 CDS ansA NC_008577.1 2335749 2336762 R converts asparagine to aspartate and ammonia; asparaginase complement(2335749..2336762) Shewanella sp. ANA-3 4479417 YP_869601.1 CDS Shewana3_1964 NC_008577.1 2336874 2338718 R TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: son:SO2420 signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 67K type complement(2336874..2338718) Shewanella sp. ANA-3 4479418 YP_869602.1 CDS Shewana3_1965 NC_008577.1 2338884 2340902 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO2419 2,4-dienoyl-CoA reductase, putative; 2,4-dienoyl-CoA reductase 2338884..2340902 Shewanella sp. ANA-3 4479419 YP_869603.1 CDS Shewana3_1966 NC_008577.1 2341027 2341482 R KEGG: xcb:XC_2154 hypothetical protein; hypothetical protein complement(2341027..2341482) Shewanella sp. ANA-3 4479420 YP_869604.1 CDS Shewana3_1967 NC_008577.1 2341670 2342080 R PFAM: ferredoxin; KEGG: son:SO2417 iron-sulfur cluster-binding protein; ferredoxin complement(2341670..2342080) Shewanella sp. ANA-3 4479421 YP_869605.1 CDS nrdB NC_008577.1 2342097 2343272 R B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta complement(2342097..2343272) Shewanella sp. ANA-3 4479422 YP_869606.1 CDS Shewana3_1969 NC_008577.1 2343289 2345577 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(2343289..2345577) Shewanella sp. ANA-3 4479423 YP_869607.1 CDS Shewana3_1970 NC_008577.1 2346063 2346737 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO2414 phosphoglycolate phosphatase; HAD family hydrolase complement(2346063..2346737) Shewanella sp. ANA-3 4479424 YP_869608.1 CDS Shewana3_1971 NC_008577.1 2346739 2347449 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(2346739..2347449) Shewanella sp. ANA-3 4476335 YP_869609.1 CDS Shewana3_1972 NC_008577.1 2347835 2350591 D TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: son:SO2411 DNA gyrase subunit A; DNA gyrase subunit A 2347835..2350591 Shewanella sp. ANA-3 4476336 YP_869610.1 CDS Shewana3_1973 NC_008577.1 2350697 2351788 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2350697..2351788 Shewanella sp. ANA-3 4476337 YP_869611.1 CDS Shewana3_1974 NC_008577.1 2352012 2353202 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(2352012..2353202) Shewanella sp. ANA-3 4476338 YP_869612.1 CDS Shewana3_1975 NC_008577.1 2353638 2354918 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2353638..2354918 Shewanella sp. ANA-3 4476339 YP_869613.1 CDS cmk NC_008577.1 2355102 2355794 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2355102..2355794 Shewanella sp. ANA-3 4476340 YP_869614.1 CDS rpsA NC_008577.1 2355897 2357564 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2355897..2357564 Shewanella sp. ANA-3 4476341 YP_869615.1 CDS ihfB NC_008577.1 2357638 2357925 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 2357638..2357925 Shewanella sp. ANA-3 4476342 YP_869616.1 CDS Shewana3_1979 NC_008577.1 2358049 2358324 D PFAM: protein of unknown function DUF1049; KEGG: son:SO2400 hypothetical protein; hypothetical protein 2358049..2358324 Shewanella sp. ANA-3 4476343 YP_869617.1 CDS Shewana3_1980 NC_008577.1 2358326 2359486 D KEGG: son:SO2399 hypothetical protein; hypothetical protein 2358326..2359486 Shewanella sp. ANA-3 4476344 YP_869618.1 CDS Shewana3_1981 NC_008577.1 2359529 2360224 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2359529..2360224 Shewanella sp. ANA-3 4476345 YP_869619.1 CDS Shewana3_1982 NC_008577.1 2360297 2361124 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO2397 short chain dehydrogenase; short chain dehydrogenase 2360297..2361124 Shewanella sp. ANA-3 4476346 YP_869620.1 CDS Shewana3_1983 NC_008577.1 2361184 2361726 D KEGG: son:SO2396 hypothetical protein; hypothetical protein 2361184..2361726 Shewanella sp. ANA-3 4476347 YP_869621.1 CDS Shewana3_1984 NC_008577.1 2361944 2363701 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO2395 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein 2361944..2363701 Shewanella sp. ANA-3 4476348 YP_869622.1 CDS Shewana3_1985 NC_008577.1 2363811 2365352 R TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: son:SO2394 penicillin-binding protein 4; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase complement(2363811..2365352) Shewanella sp. ANA-3 4476349 YP_869623.1 CDS Shewana3_1986 NC_008577.1 2365379 2365555 R KEGG: son:SO2393 hypothetical protein; hypothetical protein complement(2365379..2365555) Shewanella sp. ANA-3 4476350 YP_869624.1 CDS Shewana3_1987 NC_008577.1 2365947 2366279 D KEGG: son:SO2391 hypothetical protein; hypothetical protein 2365947..2366279 Shewanella sp. ANA-3 4476351 YP_869625.1 CDS pssA NC_008577.1 2366291 2367604 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2366291..2367604 Shewanella sp. ANA-3 4476352 YP_869626.1 CDS emrD NC_008577.1 2367658 2368902 R multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D complement(2367658..2368902) Shewanella sp. ANA-3 4476353 YP_869627.1 CDS ampC NC_008577.1 2369276 2370493 R PFAM: beta-lactamase; KEGG: son:SO2388 beta-lactamase; beta-lactamase complement(2369276..2370493) Shewanella sp. ANA-3 4476354 YP_869628.1 CDS Shewana3_1991 NC_008577.1 2370904 2371668 D PFAM: DTW domain containing protein; KEGG: son:SO2387 conserved hypothetical protein; DTW domain-containing protein 2370904..2371668 Shewanella sp. ANA-3 4476355 YP_869629.1 CDS Shewana3_1992 NC_008577.1 2371929 2373185 D PFAM: secretion protein HlyD family protein; KEGG: bth:BT0304 acriflavine resistance protein A precursor; secretion protein HlyD family protein 2371929..2373185 Shewanella sp. ANA-3 4476356 YP_869630.1 CDS Shewana3_1993 NC_008577.1 2373185 2376352 D PFAM: acriflavin resistance protein; KEGG: bth:BT0305 putative aminoglycoside efflux pump (acriflavine resistance protein); acriflavin resistance protein 2373185..2376352 Shewanella sp. ANA-3 4476357 YP_869631.1 CDS Shewana3_1994 NC_008577.1 2376345 2377832 D PFAM: outer membrane efflux protein; KEGG: cvi:CV0433 outer membrane efflux protein; outer membrane efflux protein 2376345..2377832 Shewanella sp. ANA-3 4476358 YP_869632.1 CDS Shewana3_1995 NC_008577.1 2377883 2379940 R PFAM: protein of unknown function DUF839; KEGG: son:SO2385 hypothetical protein; hypothetical protein complement(2377883..2379940) Shewanella sp. ANA-3 4476359 YP_869633.1 CDS Shewana3_1996 NC_008577.1 2380138 2381247 R PFAM: phage integrase family protein; KEGG: son:SO2384 site-specific recombinase, phage integrase family; phage integrase family protein complement(2380138..2381247) Shewanella sp. ANA-3 4476360 YP_869634.1 CDS Shewana3_1997 NC_008577.1 2381875 2382375 D KEGG: son:SO2383 hypothetical protein; hypothetical protein 2381875..2382375 Shewanella sp. ANA-3 4476361 YP_869635.1 CDS Shewana3_1998 NC_008577.1 2382530 2382856 D KEGG: son:SO2381 hypothetical protein; hypothetical protein 2382530..2382856 Shewanella sp. ANA-3 4476362 YP_869636.1 CDS Shewana3_1999 NC_008577.1 2382945 2384921 D TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO2380 RecQ domain protein; ATP-dependent DNA helicase RecQ 2382945..2384921 Shewanella sp. ANA-3 4476363 YP_869637.1 CDS Shewana3_2000 NC_008577.1 2385005 2385556 R serine protease inhibitor, inhibits trypsin and other proteases; ecotin complement(2385005..2385556) Shewanella sp. ANA-3 4476364 YP_869638.1 CDS Shewana3_2001 NC_008577.1 2385894 2386331 D KEGG: cps:CPS_3242 hypothetical protein; hypothetical protein 2385894..2386331 Shewanella sp. ANA-3 4476365 YP_869639.1 CDS Shewana3_2002 NC_008577.1 2386366 2387763 R PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: bth:BT1650 putative teichoic acid biosynthesis protein F; peptidyl-dipeptidase A complement(2386366..2387763) Shewanella sp. ANA-3 4476366 YP_869640.1 CDS Shewana3_2003 NC_008577.1 2387814 2388242 R TIGRFAM: cytidyltransferase-related domain; glycerol-3-phosphate cytidylyltransferase; PFAM: cytidylyltransferase; KEGG: ppr:PBPRA2685 putative glycerol-3-phosphatecytidyltransferase; glycerol-3-phosphate cytidylyltransferase complement(2387814..2388242) Shewanella sp. ANA-3 4476367 YP_869641.1 CDS Shewana3_2004 NC_008577.1 2388239 2389732 R PFAM: Nucleotidyl transferase; KEGG: mca:MCA1439 hypothetical protein; nucleotidyl transferase complement(2388239..2389732) Shewanella sp. ANA-3 4476368 YP_869642.1 CDS Shewana3_2005 NC_008577.1 2389743 2391692 R TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: sugar transferase; glycosyl transferase WecB/TagA/CpsF; KEGG: mca:MCA1437 bacterial sugar transferase/glycosyl transferase, WecB/TagA/CpsF family protein; WecB/TagA/CpsF family glycosyl transferase complement(2389743..2391692) Shewanella sp. ANA-3 4476369 YP_869643.1 CDS Shewana3_2006 NC_008577.1 2392087 2393142 R PFAM: glycosyl transferase, family 2; KEGG: ana:all2288 glucosyltransferase; glycosyl transferase family protein complement(2392087..2393142) Shewanella sp. ANA-3 4476370 YP_869644.1 CDS Shewana3_2007 NC_008577.1 2393139 2394467 R PFAM: polysaccharide biosynthesis protein; KEGG: ana:all2290 similar to polysaccharide biosynthesis export protein; polysaccharide biosynthesis protein complement(2393139..2394467) Shewanella sp. ANA-3 4476371 YP_869645.1 CDS Shewana3_2008 NC_008577.1 2394723 2396018 R KEGG: ana:alr2296 unknown protein; hypothetical protein complement(2394723..2396018) Shewanella sp. ANA-3 4476372 YP_869646.1 CDS Shewana3_2009 NC_008577.1 2395973 2397385 R KEGG: ana:alr2295 unknown protein; hypothetical protein complement(2395973..2397385) Shewanella sp. ANA-3 4476373 YP_869647.1 CDS Shewana3_2010 NC_008577.1 2397452 2398720 R PFAM: polysaccharide export protein; KEGG: sde:Sde_3795 cold shock protein; polysaccharide export protein complement(2397452..2398720) Shewanella sp. ANA-3 4476374 YP_869648.1 CDS Shewana3_2011 NC_008577.1 2398758 2399153 R TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mca:MCA1431 anti-anti-sigma factor family protein; anti-sigma-factor antagonist complement(2398758..2399153) Shewanella sp. ANA-3 4476375 YP_869649.1 CDS Shewana3_2012 NC_008577.1 2399325 2399720 R putative anti-sigma regulatory factor complement(2399325..2399720) Shewanella sp. ANA-3 4476376 YP_869650.1 CDS Shewana3_2013 NC_008577.1 2399717 2400952 R PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mca:MCA1440 response regulator; response regulator receiver modulated serine phosphatase complement(2399717..2400952) Shewanella sp. ANA-3 4476377 YP_869651.1 CDS Shewana3_2014 NC_008577.1 2401261 2402163 D TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: cvi:CV1854 probable periplasmic binding protein-related protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 2401261..2402163 Shewanella sp. ANA-3 4476378 YP_869652.1 CDS Shewana3_2015 NC_008577.1 2402165 2405524 D KEGG: nmu:Nmul_A1556 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; putative PAS/PAC sensor protein 2402165..2405524 Shewanella sp. ANA-3 4476379 YP_869653.1 CDS Shewana3_2016 NC_008577.1 2405533 2407014 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: vch:VC1021 LuxO repressor protein; two component, sigma54 specific, Fis family transcriptional regulator 2405533..2407014 Shewanella sp. ANA-3 4476380 YP_869654.1 CDS Shewana3_2017 NC_008577.1 2407242 2408873 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO1434 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2407242..2408873) Shewanella sp. ANA-3 4476381 YP_869655.1 CDS Shewana3_2018 NC_008577.1 2409833 2410414 D hypothetical protein 2409833..2410414 Shewanella sp. ANA-3 4476383 YP_869656.1 CDS Shewana3_2019 NC_008577.1 2410411 2412951 D hypothetical protein 2410411..2412951 Shewanella sp. ANA-3 4476384 YP_869657.1 CDS Shewana3_2020 NC_008577.1 2412921 2416034 D PFAM: phage integrase family protein; KEGG: tcx:Tcr_2093 hypothetical protein; phage integrase family protein 2412921..2416034 Shewanella sp. ANA-3 4476385 YP_869658.1 CDS Shewana3_2021 NC_008577.1 2416165 2417028 R PFAM: metal-dependent phosphohydrolase, HD sub domain; metal dependent phosphohydrolase complement(2416165..2417028) Shewanella sp. ANA-3 4476386 YP_869659.1 CDS Shewana3_2022 NC_008577.1 2417021 2418244 R PFAM: phage integrase family protein; KEGG: dar:Daro_1324 phage integrase; phage integrase family protein complement(2417021..2418244) Shewanella sp. ANA-3 4476387 YP_869660.1 CDS Shewana3_2023 NC_008577.1 2418237 2418473 R hypothetical protein complement(2418237..2418473) Shewanella sp. ANA-3 4476388 YP_869661.1 CDS Shewana3_2024 NC_008577.1 2418595 2418819 D KEGG: dar:Daro_1322 hypothetical protein; hypothetical protein 2418595..2418819 Shewanella sp. ANA-3 4476389 YP_869662.1 CDS Shewana3_2025 NC_008577.1 2419269 2420771 D PFAM: sigma-54 factor, interaction domain-containing protein; SMART: AAA ATPase; KEGG: hch:HCH_05030 sigma 54-dependent transcriptional activator; response regulator receiver protein 2419269..2420771 Shewanella sp. ANA-3 4476390 YP_869663.1 CDS Shewana3_2026 NC_008577.1 2420829 2424245 D PFAM: helicase domain protein; type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; KEGG: sbo:SBO_4158 putative type I restriction enzyme R protein; type III restriction enzyme, res subunit 2420829..2424245 Shewanella sp. ANA-3 4476391 YP_869664.1 CDS Shewana3_2027 NC_008577.1 2424267 2425808 D PFAM: N-6 DNA methylase; KEGG: sbo:SBO_4159 putative type I restriction enzyme M protein; N-6 DNA methylase 2424267..2425808 Shewanella sp. ANA-3 4476392 YP_869665.1 CDS Shewana3_2028 NC_008577.1 2425817 2426992 D PFAM: restriction modification system DNA specificity domain; KEGG: spn:SP0508 type I restriction-modification system, S subunit; restriction modification system DNA specificity subunit 2425817..2426992 Shewanella sp. ANA-3 4476393 YP_869666.1 CDS Shewana3_2029 NC_008577.1 2427014 2428147 D KEGG: efa:EF2349 hypothetical protein; hypothetical protein 2427014..2428147 Shewanella sp. ANA-3 4476394 YP_869667.1 CDS Shewana3_2030 NC_008577.1 2428148 2429917 D KEGG: efa:EF2348 hypothetical protein; hypothetical protein 2428148..2429917 Shewanella sp. ANA-3 4476395 YP_869668.1 CDS Shewana3_2031 NC_008577.1 2430156 2430695 D KEGG: pfo:Pfl_2662 hypothetical protein; hypothetical protein 2430156..2430695 Shewanella sp. ANA-3 4476396 YP_869669.1 CDS Shewana3_2032 NC_008577.1 2430700 2432328 D KEGG: pfo:Pfl_2663 hypothetical protein; hypothetical protein 2430700..2432328 Shewanella sp. ANA-3 4476397 YP_869670.1 CDS Shewana3_2033 NC_008577.1 2432306 2434015 D PFAM: GTP-binding protein, HSR1-related; KEGG: pfo:Pfl_2664 GTP-binding protein, HSR1-like; HSR1-like GTP-binding protein 2432306..2434015 Shewanella sp. ANA-3 4476398 YP_869671.1 CDS Shewana3_2034 NC_008577.1 2434352 2434672 D hypothetical protein 2434352..2434672 Shewanella sp. ANA-3 4476399 YP_869672.1 CDS Shewana3_2035 NC_008577.1 2435122 2436213 D KEGG: hch:HCH_05025 predicted hydrolase (metallo-beta-lactamase superfamily); metallo-beta-lactamase superfamily hydrolase 2435122..2436213 Shewanella sp. ANA-3 4476400 YP_869673.1 CDS Shewana3_2036 NC_008577.1 2436216 2436866 D KEGG: hch:HCH_05024 hypothetical protein; hypothetical protein 2436216..2436866 Shewanella sp. ANA-3 4476401 YP_869674.1 CDS Shewana3_2037 NC_008577.1 2437310 2440852 D KEGG: lpf:lpl2493 hypothetical protein; hypothetical protein 2437310..2440852 Shewanella sp. ANA-3 4476402 YP_869675.1 CDS Shewana3_2038 NC_008577.1 2440874 2447236 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: lpf:lpl2494 hypothetical protein; DEAD/DEAH box helicase 2440874..2447236 Shewanella sp. ANA-3 4476403 YP_869676.1 CDS Shewana3_2039 NC_008577.1 2448169 2449548 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO2295 MATE efflux family protein; MATE efflux family protein complement(2448169..2449548) Shewanella sp. ANA-3 4476284 YP_869677.1 CDS Shewana3_2040 NC_008577.1 2449582 2450202 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2449582..2450202 Shewanella sp. ANA-3 4476285 YP_869678.1 CDS Shewana3_2041 NC_008577.1 2450212 2450412 R KEGG: son:SO2297 hypothetical protein; hypothetical protein complement(2450212..2450412) Shewanella sp. ANA-3 4476286 YP_869679.1 CDS Shewana3_2043 NC_008577.1 2451269 2453197 D catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 2451269..2453197 Shewanella sp. ANA-3 4476288 YP_869680.1 CDS infC NC_008577.1 2453312 2453743 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 2453312..2453743 Shewanella sp. ANA-3 4476289 YP_869681.1 CDS rpmI NC_008577.1 2453829 2454023 D PFAM: ribosomal protein L35; KEGG: son:SO2301 50S ribosomal protein L35; 50S ribosomal protein L35 2453829..2454023 Shewanella sp. ANA-3 4476290 YP_869682.1 CDS rplT NC_008577.1 2454040 2454396 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2454040..2454396 Shewanella sp. ANA-3 4476291 YP_869683.1 CDS Shewana3_2047 NC_008577.1 2454590 2455543 R TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO2303 thioredoxin reductase; thioredoxin reductase complement(2454590..2455543) Shewanella sp. ANA-3 4476292 YP_869684.1 CDS Shewana3_2048 NC_008577.1 2455794 2456909 R TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: vfi:VF0903 alanine dehydrogenase; L-alanine dehydrogenase complement(2455794..2456909) Shewanella sp. ANA-3 4476293 YP_869685.1 CDS Shewana3_2049 NC_008577.1 2457090 2457596 D mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 2457090..2457596 Shewanella sp. ANA-3 4476294 YP_869686.1 CDS Shewana3_2050 NC_008577.1 2457918 2460671 D PFAM: cell divisionFtsK/SpoIIIE; KEGG: son:SO2306 cell division protein FtsK, putative; DNA translocase FtsK 2457918..2460671 Shewanella sp. ANA-3 4476295 YP_869687.1 CDS Shewana3_2051 NC_008577.1 2460741 2461361 D PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: son:SO2307 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 2460741..2461361 Shewanella sp. ANA-3 4476296 YP_869688.1 CDS Shewana3_2052 NC_008577.1 2461370 2462701 D PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: son:SO2308 ATPase, AAA family; recombination factor protein RarA 2461370..2462701 Shewanella sp. ANA-3 4476297 YP_869689.1 CDS Shewana3_2053 NC_008577.1 2462694 2463068 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2462694..2463068 Shewanella sp. ANA-3 4476298 YP_869690.1 CDS Shewana3_2054 NC_008577.1 2463087 2464373 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2463087..2464373 Shewanella sp. ANA-3 4476299 YP_869691.1 CDS Shewana3_2055 NC_008577.1 2464392 2464514 D KEGG: son:SO2311 hypothetical protein; hypothetical protein 2464392..2464514 Shewanella sp. ANA-3 4476300 YP_869692.1 CDS Shewana3_2056 NC_008577.1 2464582 2464920 R PFAM: DsrC family protein; KEGG: son:SO2379 putative sulfite reductase; formate dehydrogenase complement(2464582..2464920) Shewanella sp. ANA-3 4476301 YP_869693.1 CDS Shewana3_2057 NC_008577.1 2464914 2465195 R PFAM: DsrH family protein; KEGG: son:SO2378 putative uncharacterized protein involved in oxidation of intracellular sulfur; DsrH family protein complement(2464914..2465195) Shewanella sp. ANA-3 4476302 YP_869694.1 CDS Shewana3_2058 NC_008577.1 2465195 2465551 R PFAM: DsrE family protein; KEGG: son:SO2377 putative uncharacterized protein involved in oxidation of intracellular sulfur; DsrE family protein complement(2465195..2465551) Shewanella sp. ANA-3 4476303 YP_869695.1 CDS Shewana3_2059 NC_008577.1 2465566 2465958 R PFAM: DsrE family protein; KEGG: son:SO2376 DsrE-related protein; DsrE family protein complement(2465566..2465958) Shewanella sp. ANA-3 4476304 YP_869696.1 CDS Shewana3_2060 NC_008577.1 2466015 2466674 R PFAM: protein of unknown function UPF0005; KEGG: son:SO2375 membrane protein, putative; hypothetical protein complement(2466015..2466674) Shewanella sp. ANA-3 4476305 YP_869697.1 CDS Shewana3_2061 NC_008577.1 2466934 2467845 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2374 transcriptional regulator, LysR family; putative DNA-binding transcriptional regulator complement(2466934..2467845) Shewanella sp. ANA-3 4476306 YP_869698.1 CDS Shewana3_2062 NC_008577.1 2467952 2469223 D uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 2467952..2469223 Shewanella sp. ANA-3 4476307 YP_869699.1 CDS Shewana3_2063 NC_008577.1 2469798 2470328 R KEGG: cps:CPS_0533 hypothetical protein; hypothetical protein complement(2469798..2470328) Shewanella sp. ANA-3 4476309 YP_869700.1 CDS Shewana3_2064 NC_008577.1 2470698 2472371 D catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 2470698..2472371 Shewanella sp. ANA-3 4476310 YP_869701.1 CDS araD NC_008577.1 2472373 2473068 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 2472373..2473068 Shewanella sp. ANA-3 4476311 YP_869702.1 CDS Shewana3_2066 NC_008577.1 2473107 2474609 D catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 2473107..2474609 Shewanella sp. ANA-3 4476312 YP_869703.1 CDS Shewana3_2067 NC_008577.1 2474686 2475294 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sde:Sde_0770 putative phosphatase; HAD family hydrolase 2474686..2475294 Shewanella sp. ANA-3 4476313 YP_869704.1 CDS Shewana3_2068 NC_008577.1 2475530 2476246 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: ilo:IL0306 transcriptional regulator, FadR family; GntR family transcriptional regulator 2475530..2476246 Shewanella sp. ANA-3 4476314 YP_869705.1 CDS Shewana3_2069 NC_008577.1 2476356 2477303 R PFAM: glycoside hydrolase, family 43; KEGG: sde:Sde_0789 endo-1,4-beta-xylanase D precursor; glycoside hydrolase complement(2476356..2477303) Shewanella sp. ANA-3 4476315 YP_869706.1 CDS Shewana3_2070 NC_008577.1 2477453 2479213 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 2477453..2479213 Shewanella sp. ANA-3 4476316 YP_869707.1 CDS Shewana3_2071 NC_008577.1 2479274 2480044 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sde:Sde_0771 transcriptional regulator, GntR family; short-chain dehydrogenase/reductase SDR 2479274..2480044 Shewanella sp. ANA-3 4476317 YP_869708.1 CDS Shewana3_2072 NC_008577.1 2480124 2481179 D PFAM: Aldose 1-epimerase; KEGG: gka:GK1877 aldose 1-epimerase; aldose 1-epimerase 2480124..2481179 Shewanella sp. ANA-3 4476318 YP_869709.1 CDS Shewana3_2073 NC_008577.1 2481278 2482219 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sde:Sde_0766 putative LacI-type transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 2481278..2482219 Shewanella sp. ANA-3 4476319 YP_869710.1 CDS Shewana3_2074 NC_008577.1 2482251 2483750 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sde:Sde_0767 putative sugar uptake ABC transporter ATP-binding protein; ABC transporter-like protein 2482251..2483750 Shewanella sp. ANA-3 4476320 YP_869711.1 CDS Shewana3_2075 NC_008577.1 2483751 2484968 D PFAM: inner-membrane translocator; KEGG: sde:Sde_0768 conserved hypothetical ABC transporter permease protein YtfT; inner-membrane translocator 2483751..2484968 Shewanella sp. ANA-3 4476321 YP_869712.1 CDS Shewana3_2076 NC_008577.1 2484965 2485927 D membrane component of a putative sugar ABC transporter system; inner membrane ABC transporter permease YjfF 2484965..2485927 Shewanella sp. ANA-3 4476322 YP_869713.1 CDS Shewana3_2077 NC_008577.1 2485902 2487035 D PFAM: glycoside hydrolase, family 43; KEGG: bha:BH1867 hypothetical protein; glycoside hydrolase 2485902..2487035 Shewanella sp. ANA-3 4476323 YP_869714.1 CDS Shewana3_2078 NC_008577.1 2487102 2488103 D PFAM: glycoside hydrolase, family 43; KEGG: cac:CAC1529 beta-xylosidase, family 43 glycosyl hydrolase; glycoside hydrolase 2487102..2488103 Shewanella sp. ANA-3 4476324 YP_869715.1 CDS Shewana3_2079 NC_008577.1 2488411 2489001 D hypothetical protein 2488411..2489001 Shewanella sp. ANA-3 4476325 YP_869716.1 CDS Shewana3_2080 NC_008577.1 2489279 2491666 R KEGG: sde:Sde_0778 acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase complement(2489279..2491666) Shewanella sp. ANA-3 4476326 YP_869717.1 CDS Shewana3_2081 NC_008577.1 2491773 2493218 R TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: sde:Sde_0776 MJ0042 finger-like region; sugar (glycoside-Pentoside-hexuronide) transporter complement(2491773..2493218) Shewanella sp. ANA-3 4476327 YP_869718.1 CDS Shewana3_2082 NC_008577.1 2493427 2494497 D KEGG: sde:Sde_0786 arabinan endo-1,5-alpha-L-arabinosidase; arabinan endo-1,5-alpha-L-arabinosidase 2493427..2494497 Shewanella sp. ANA-3 4476328 YP_869719.1 CDS Shewana3_2083 NC_008577.1 2494497 2496401 D PFAM: glycoside hydrolase, family 43; KEGG: sde:Sde_0791 alpha-L-arabinofuranosidase; glycoside hydrolase 2494497..2496401 Shewanella sp. ANA-3 4476329 YP_869720.1 CDS Shewana3_2084 NC_008577.1 2496581 2497336 R KEGG: ilo:IL2350 predicted permease; permease complement(2496581..2497336) Shewanella sp. ANA-3 4476330 YP_869721.1 CDS Shewana3_2085 NC_008577.1 2497516 2500353 R TIGRFAM: TonB-dependent receptor; KEGG: sde:Sde_2288 peptidase M24A, methionine aminopeptidase, subfamily 1; TonB-dependent receptor complement(2497516..2500353) Shewanella sp. ANA-3 4476331 YP_869722.1 CDS Shewana3_2086 NC_008577.1 2500940 2504305 D KEGG: sde:Sde_3317 beta-xylosidase-like; beta-xylosidase-like protein 2500940..2504305 Shewanella sp. ANA-3 4476332 YP_869723.1 CDS Shewana3_2087 NC_008577.1 2504405 2505256 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ppr:PBPRB0783 hypothetical protein; LysR family transcriptional regulator 2504405..2505256 Shewanella sp. ANA-3 4476333 YP_869724.1 CDS Shewana3_2088 NC_008577.1 2505356 2506258 D KEGG: rso:RSc2755 hypothetical protein; hypothetical protein 2505356..2506258 Shewanella sp. ANA-3 4476334 YP_869725.1 CDS Shewana3_2089 NC_008577.1 2506781 2509798 D TIGRFAM: Twin-arginine translocation pathway signal; formate dehydrogenase, alpha subunit; PFAM: DsrC family protein; KEGG: son:SO0101 formate dehydrogenase, major subunit (formate dehydrogenase alpha subunit); formate dehydrogenase subunit alpha 2506781..2509798 Shewanella sp. ANA-3 4479497 YP_869726.1 CDS Shewana3_2090 NC_008577.1 2509801 2510703 D TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO0102 formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase beta subunit); formate dehydrogenase subunit beta 2509801..2510703 Shewanella sp. ANA-3 4479498 YP_869727.1 CDS Shewana3_2091 NC_008577.1 2510700 2511323 D TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO0103 formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit); formate dehydrogenase subunit gamma 2510700..2511323 Shewanella sp. ANA-3 4479499 YP_869728.1 CDS Shewana3_2092 NC_008577.1 2511326 2512225 D TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: son:SO0104 fdhE protein; formate dehydrogenase accessory protein FdhE 2511326..2512225 Shewanella sp. ANA-3 4479500 YP_869729.1 CDS Shewana3_2093 NC_008577.1 2513627 2513866 R KEGG: sgl:SGP1_0047 transposase; transposase complement(2513627..2513866) Shewanella sp. ANA-3 4479501 YP_869730.1 CDS Shewana3_2094 NC_008577.1 2513971 2514882 R KEGG: vvu:VV12183 hypothetical protein; hypothetical protein complement(2513971..2514882) Shewanella sp. ANA-3 4479502 YP_869731.1 CDS Shewana3_2095 NC_008577.1 2515287 2516345 D KEGG: hit:NTHI1788 MukF homolog; hypothetical protein 2515287..2516345 Shewanella sp. ANA-3 4479503 YP_869732.1 CDS Shewana3_2096 NC_008577.1 2516338 2517120 D KEGG: eca:ECA2548 killing factor; thioredoxin-disulfide reductase 2516338..2517120 Shewanella sp. ANA-3 4479504 YP_869733.1 CDS mukB NC_008577.1 2517113 2521666 D SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB 2517113..2521666 Shewanella sp. ANA-3 4479505 YP_869734.1 CDS Shewana3_2098 NC_008577.1 2521663 2522613 D hypothetical protein 2521663..2522613 Shewanella sp. ANA-3 4479506 YP_869735.1 CDS Shewana3_2099 NC_008577.1 2522804 2524114 D hypothetical protein 2522804..2524114 Shewanella sp. ANA-3 4479507 YP_869736.1 CDS Shewana3_2100 NC_008577.1 2524374 2524574 R KEGG: tcx:Tcr_1853 transposase IS3/IS911; transposase IS3/IS911 complement(2524374..2524574) Shewanella sp. ANA-3 4479508 YP_869737.1 CDS Shewana3_2101 NC_008577.1 2524671 2524961 D KEGG: par:Psyc_1931 possible metal dependent phosphohydrolase; putative metal dependent phosphohydrolase 2524671..2524961 Shewanella sp. ANA-3 4479509 YP_869738.1 CDS Shewana3_2102 NC_008577.1 2525195 2525536 D hypothetical protein 2525195..2525536 Shewanella sp. ANA-3 4479510 YP_869739.1 CDS Shewana3_2103 NC_008577.1 2525702 2526448 D PFAM: restriction endonuclease; KEGG: son:SO0304 hypothetical endonuclease; restriction endonuclease 2525702..2526448 Shewanella sp. ANA-3 4479511 YP_869740.1 CDS Shewana3_2104 NC_008577.1 2527441 2528736 R PFAM: phage integrase family protein; KEGG: son:SO2370 site-specific recombinase, phage integrase family; phage integrase family protein complement(2527441..2528736) Shewanella sp. ANA-3 4479512 YP_869741.1 CDS Shewana3_2105 NC_008577.1 2529187 2530764 D PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO2366 response regulator; response regulator receiver modulated metal dependent phosphohydrolase 2529187..2530764 Shewanella sp. ANA-3 4479513 YP_869742.1 CDS Shewana3_2106 NC_008577.1 2530873 2531358 R KEGG: son:SO2365 hypothetical protein; hypothetical protein complement(2530873..2531358) Shewanella sp. ANA-3 4479514 YP_869743.1 CDS Shewana3_2107 NC_008577.1 2531582 2533018 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 2531582..2533018 Shewanella sp. ANA-3 4479515 YP_869744.1 CDS Shewana3_2108 NC_008577.1 2533031 2533657 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2533031..2533657 Shewanella sp. ANA-3 4479516 YP_869745.1 CDS Shewana3_2109 NC_008577.1 2533669 2533845 D PFAM: Cbb3-type cytochrome oxidase component; KEGG: son:SO2362 cytochrome c oxidase, cbb3-type, CcoQ subunit; cbb3-type cytochrome oxidase subunit 2533669..2533845 Shewanella sp. ANA-3 4479517 YP_869746.1 CDS Shewana3_2110 NC_008577.1 2533845 2534813 D TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: son:SO2361 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 2533845..2534813 Shewanella sp. ANA-3 4479518 YP_869747.1 CDS Shewana3_2111 NC_008577.1 2534924 2535403 D KEGG: son:SO2360 hypothetical protein; hypothetical protein 2534924..2535403 Shewanella sp. ANA-3 4479519 YP_869748.1 CDS Shewana3_2112 NC_008577.1 2535414 2537825 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: son:SO2359 cation transport ATPase, E1-E2 family; heavy metal translocating P-type ATPase 2535414..2537825 Shewanella sp. ANA-3 4479520 YP_869749.1 CDS Shewana3_2113 NC_008577.1 2537845 2538045 D TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: son:SO2358 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein 2537845..2538045 Shewanella sp. ANA-3 4479521 YP_869750.1 CDS Shewana3_2114 NC_008577.1 2538054 2538746 D KEGG: son:SO2357 hypothetical protein; hypothetical protein 2538054..2538746 Shewanella sp. ANA-3 4479522 YP_869751.1 CDS Shewana3_2115 NC_008577.1 2538802 2539554 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 2538802..2539554 Shewanella sp. ANA-3 4479523 YP_869752.1 CDS Shewana3_2116 NC_008577.1 2539697 2540629 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 2539697..2540629 Shewanella sp. ANA-3 4479524 YP_869753.1 CDS Shewana3_2117 NC_008577.1 2540707 2541675 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 2540707..2541675 Shewanella sp. ANA-3 4479525 YP_869754.1 CDS Shewana3_2118 NC_008577.1 2541735 2542358 R KEGG: son:SO2353 hypothetical protein; hypothetical protein complement(2541735..2542358) Shewanella sp. ANA-3 4479526 YP_869755.1 CDS Shewana3_2119 NC_008577.1 2542351 2543163 R PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; KEGG: son:SO2352 bax protein, putative; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase complement(2542351..2543163) Shewanella sp. ANA-3 4479527 YP_869756.1 CDS Shewana3_2120 NC_008577.1 2543481 2544404 D TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: son:SO2351 hypothetical protein; hypothetical protein 2543481..2544404 Shewanella sp. ANA-3 4479528 YP_869757.1 CDS Shewana3_2121 NC_008577.1 2544569 2545762 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(2544569..2545762) Shewanella sp. ANA-3 4479529 YP_869758.1 CDS Shewana3_2122 NC_008577.1 2546690 2548123 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase complement(2546690..2548123) Shewanella sp. ANA-3 4478674 YP_869759.1 CDS Shewana3_2123 NC_008577.1 2548330 2549217 D KEGG: son:SO2346 hypothetical protein; hypothetical protein 2548330..2549217 Shewanella sp. ANA-3 4478675 YP_869760.1 CDS Shewana3_2124 NC_008577.1 2549430 2550440 D TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: son:SO2345 glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 2549430..2550440 Shewanella sp. ANA-3 4478676 YP_869761.1 CDS Shewana3_2125 NC_008577.1 2550566 2551078 R PFAM: superoxide dismutase, copper/zinc binding; KEGG: tbd:Tbd_0659 superoxide dismutase, Cu-Zn; superoxide dismutase, copper/zinc binding complement(2550566..2551078) Shewanella sp. ANA-3 4478677 YP_869762.1 CDS Shewana3_2126 NC_008577.1 2551189 2551911 R PFAM: Integrase, catalytic region; KEGG: pfo:Pfl_2131 integrase, catalytic region; integrase catalytic subunit complement(2551189..2551911) Shewanella sp. ANA-3 4478678 YP_869763.1 CDS Shewana3_2127 NC_008577.1 2552013 2552405 R KEGG: pst:PSPTO4510 ISPsy11, transposase OrfA; ISPsy11, transposase OrfA complement(2552013..2552405) Shewanella sp. ANA-3 4478679 YP_869764.1 CDS Shewana3_2128 NC_008577.1 2552678 2553751 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(2552678..2553751) Shewanella sp. ANA-3 4478324 YP_869765.1 CDS Shewana3_2129 NC_008577.1 2553896 2555491 R PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: son:SO2341 alpha keto acid dehydrogenase complex, E2 component; dihydrolipoamide acetyltransferase complement(2553896..2555491) Shewanella sp. ANA-3 4478325 YP_869766.1 CDS Shewana3_2130 NC_008577.1 2555501 2556478 R PFAM: Transketolase, central region; Transketolase domain protein; KEGG: son:SO2340 alpha keto acid dehydrogenase complex, E1 component, beta subunit; transketolase, central region complement(2555501..2556478) Shewanella sp. ANA-3 4478326 YP_869767.1 CDS Shewana3_2131 NC_008577.1 2556482 2557660 R PFAM: dehydrogenase, E1 component; KEGG: son:SO2339 alpha keto acid dehydrogenase complex, E1 component, alpha subunit; dehydrogenase, E1 component complement(2556482..2557660) Shewanella sp. ANA-3 4478327 YP_869768.1 CDS Shewana3_2132 NC_008577.1 2557823 2558857 R catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase complement(2557823..2558857) Shewanella sp. ANA-3 4478328 YP_869769.1 CDS Shewana3_2133 NC_008577.1 2559135 2559614 D TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: son:SO2337 peptide methionine sulfoxide reductase; peptide methionine sulfoxide reductase 2559135..2559614 Shewanella sp. ANA-3 4478329 YP_869770.1 CDS Shewana3_2134 NC_008577.1 2559733 2561385 R catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase complement(2559733..2561385) Shewanella sp. ANA-3 4478330 YP_869771.1 CDS Shewana3_2135 NC_008577.1 2561457 2562008 R negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA complement(2561457..2562008) Shewanella sp. ANA-3 4478331 YP_869772.1 CDS Shewana3_2136 NC_008577.1 2562280 2563080 D PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: son:SO2333 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold domain-containing protein 2562280..2563080 Shewanella sp. ANA-3 4478332 YP_869773.1 CDS Shewana3_2137 NC_008577.1 2563182 2563403 D KEGG: son:SO2332 hypothetical protein; hypothetical protein 2563182..2563403 Shewanella sp. ANA-3 4478333 YP_869774.1 CDS Shewana3_2138 NC_008577.1 2563415 2563687 D PFAM: CopG domain protein DNA-binding domain protein; KEGG: son:SO2331 hypothetical protein; LexA regulated protein 2563415..2563687 Shewanella sp. ANA-3 4478334 YP_869775.1 CDS Shewana3_2139 NC_008577.1 2563743 2564270 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 2563743..2564270 Shewanella sp. ANA-3 4478335 YP_869776.1 CDS Shewana3_2140 NC_008577.1 2564299 2565531 D KEGG: son:SO2329 hypothetical protein; hypothetical protein 2564299..2565531 Shewanella sp. ANA-3 4478336 YP_869777.1 CDS Shewana3_2141 NC_008577.1 2565576 2566136 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2565576..2566136 Shewanella sp. ANA-3 4478337 YP_869778.1 CDS Shewana3_2142 NC_008577.1 2566187 2566909 R PFAM: Integrase, catalytic region; KEGG: pfo:Pfl_2131 integrase, catalytic region; integrase catalytic subunit complement(2566187..2566909) Shewanella sp. ANA-3 4478338 YP_869779.1 CDS Shewana3_2143 NC_008577.1 2567011 2567403 R KEGG: pst:PSPTO4510 ISPsy11, transposase OrfA; response regulator receiver protein complement(2567011..2567403) Shewanella sp. ANA-3 4478339 YP_869780.1 CDS Shewana3_2144 NC_008577.1 2567673 2569055 R PFAM: Na+/H+ antiporter NhaC; KEGG: son:SO2481 hypothetical protein; Na+/H+ antiporter NhaC complement(2567673..2569055) Shewanella sp. ANA-3 4478340 YP_869781.1 CDS Shewana3_2145 NC_008577.1 2569796 2571010 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2569796..2571010 Shewanella sp. ANA-3 4478341 YP_869782.1 CDS Shewana3_2146 NC_008577.1 2571265 2571852 D KEGG: son:SO2484 hypothetical protein; hypothetical protein 2571265..2571852 Shewanella sp. ANA-3 4478342 YP_869783.1 CDS Shewana3_2147 NC_008577.1 2571878 2573218 D dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2571878..2573218 Shewanella sp. ANA-3 4478343 YP_869784.1 CDS Shewana3_2148 NC_008577.1 2573289 2573930 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(2573289..2573930) Shewanella sp. ANA-3 4478344 YP_869785.1 CDS Shewana3_2149 NC_008577.1 2573951 2575777 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(2573951..2575777) Shewanella sp. ANA-3 4478345 YP_869786.1 CDS Shewana3_2150 NC_008577.1 2575790 2576488 R TIGRFAM: 6-phosphogluconolactonase; KEGG: son:SO2488 6-phosphogluconolactonase; 6-phosphogluconolactonase complement(2575790..2576488) Shewanella sp. ANA-3 4478346 YP_869787.1 CDS Shewana3_2151 NC_008577.1 2576498 2577970 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(2576498..2577970) Shewanella sp. ANA-3 4478347 YP_869788.1 CDS Shewana3_2152 NC_008577.1 2578283 2579137 D Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2578283..2579137 Shewanella sp. ANA-3 4478348 YP_869789.1 CDS Shewana3_2153 NC_008577.1 2579323 2580762 D PFAM: pyruvate kinase; KEGG: son:SO2491 pyruvate kinase II; pyruvate kinase 2579323..2580762 Shewanella sp. ANA-3 4478349 YP_869790.1 CDS Shewana3_2154 NC_008577.1 2580903 2583182 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(2580903..2583182) Shewanella sp. ANA-3 4478350 YP_869791.1 CDS Shewana3_2155 NC_008577.1 2583198 2583836 R PFAM: regulatory protein, TetR; KEGG: son:SO2493 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2583198..2583836) Shewanella sp. ANA-3 4478351 YP_869792.1 CDS Shewana3_2156 NC_008577.1 2584055 2585914 D PFAM: peptidase M2, peptidyl-dipeptidase A; KEGG: son:SO2494 zinc-dependent metallopeptidase; peptidase M2, peptidyl-dipeptidase A 2584055..2585914 Shewanella sp. ANA-3 4478352 YP_869793.1 CDS Shewana3_2157 NC_008577.1 2586084 2586674 R PFAM: Smr protein/MutS2; KEGG: son:SO2495 Smr domain protein; Smr protein/MutS2 complement(2586084..2586674) Shewanella sp. ANA-3 4478353 YP_869794.1 CDS Shewana3_2158 NC_008577.1 2586807 2587385 D KEGG: son:SO2495.1 hypothetical protein; hypothetical protein 2586807..2587385 Shewanella sp. ANA-3 4478354 YP_869795.1 CDS Shewana3_2159 NC_008577.1 2587413 2587907 D PFAM: SEC-C motif domain protein; KEGG: son:SO2497 conserved hypothetical protein; SecC motif-containing protein 2587413..2587907 Shewanella sp. ANA-3 4478355 YP_869796.1 CDS Shewana3_2160 NC_008577.1 2587987 2590170 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: son:SO2498 sensory box protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(2587987..2590170) Shewanella sp. ANA-3 4478356 YP_869797.1 CDS Shewana3_2161 NC_008577.1 2590359 2590646 R KEGG: son:SO2499 hypothetical protein; hypothetical protein complement(2590359..2590646) Shewanella sp. ANA-3 4478357 YP_869798.1 CDS Shewana3_2162 NC_008577.1 2590896 2591384 R KEGG: son:SO2500 hypothetical protein; hypothetical protein complement(2590896..2591384) Shewanella sp. ANA-3 4478358 YP_869799.1 CDS Shewana3_2163 NC_008577.1 2592129 2592797 R KEGG: son:SO2501 radical activating enzyme; radical activating enzyme complement(2592129..2592797) Shewanella sp. ANA-3 4478362 YP_869800.1 CDS Shewana3_2164 NC_008577.1 2592986 2593705 D YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC 2592986..2593705 Shewanella sp. ANA-3 4478363 YP_869801.1 CDS Shewana3_2165 NC_008577.1 2593702 2594307 D PFAM: Rhomboid family protein; KEGG: son:SO2504 hypothetical protein; rhomboid family protein 2593702..2594307 Shewanella sp. ANA-3 4478364 YP_869802.1 CDS Shewana3_2166 NC_008577.1 2594447 2596468 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(2594447..2596468) Shewanella sp. ANA-3 4478365 YP_869803.1 CDS Shewana3_2167 NC_008577.1 2598640 2600544 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: son:SO2507 GGDEF domain protein; diguanylate cyclase/phosphodiesterase 2598640..2600544 Shewanella sp. ANA-3 4478371 YP_869804.1 CDS Shewana3_2168 NC_008577.1 2600670 2601248 D TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: son:SO2508 RnfAE/NqrDE family protein; Na(+)-translocating NADH-quinone reductase subunit E 2600670..2601248 Shewanella sp. ANA-3 4478372 YP_869805.1 CDS Shewana3_2169 NC_008577.1 2601249 2601830 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 2601249..2601830 Shewanella sp. ANA-3 4478373 YP_869806.1 CDS Shewana3_2170 NC_008577.1 2601834 2604200 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 2601834..2604200 Shewanella sp. ANA-3 4478374 YP_869807.1 CDS rnfD NC_008577.1 2604281 2605330 D RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 2604281..2605330 Shewanella sp. ANA-3 4478375 YP_869808.1 CDS Shewana3_2172 NC_008577.1 2605396 2606022 D part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 2605396..2606022 Shewanella sp. ANA-3 4478376 YP_869809.1 CDS Shewana3_2173 NC_008577.1 2606015 2606713 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 2606015..2606713 Shewanella sp. ANA-3 4478377 YP_869810.1 CDS Shewana3_2174 NC_008577.1 2606780 2607415 D KEGG: son:SO2514 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; DNA-(apurinic or apyrimidinic site) lyase / endonuclease III 2606780..2607415 Shewanella sp. ANA-3 4478378 YP_869811.1 CDS Shewana3_2175 NC_008577.1 2607529 2608851 D PFAM: phage integrase family protein; KEGG: tcx:Tcr_0088 phage integrase; phage integrase family protein 2607529..2608851 Shewanella sp. ANA-3 4478379 YP_869812.1 CDS Shewana3_2176 NC_008577.1 2608848 2610494 D KEGG: tcx:Tcr_0087 hypothetical protein; hypothetical protein 2608848..2610494 Shewanella sp. ANA-3 4478380 YP_869813.1 CDS Shewana3_2177 NC_008577.1 2610605 2612809 D KEGG: tcx:Tcr_0086 hypothetical protein; hypothetical protein 2610605..2612809 Shewanella sp. ANA-3 4478381 YP_869814.1 CDS Shewana3_2178 NC_008577.1 2612819 2613241 D KEGG: tcx:Tcr_0085 hypothetical protein; hypothetical protein 2612819..2613241 Shewanella sp. ANA-3 4478382 YP_869815.1 CDS Shewana3_2179 NC_008577.1 2613471 2614376 R KEGG: aci:ACIAD2183 hypothetical protein; hypothetical protein complement(2613471..2614376) Shewanella sp. ANA-3 4478383 YP_869816.1 CDS Shewana3_2180 NC_008577.1 2614907 2615203 R hypothetical protein complement(2614907..2615203) Shewanella sp. ANA-3 4478384 YP_869817.1 CDS Shewana3_2181 NC_008577.1 2615316 2616128 R KEGG: bja:blr0077 hypothetical protein; hypothetical protein complement(2615316..2616128) Shewanella sp. ANA-3 4478385 YP_869818.1 CDS Shewana3_2182 NC_008577.1 2616153 2618924 R hypothetical protein complement(2616153..2618924) Shewanella sp. ANA-3 4478386 YP_869819.1 CDS Shewana3_2183 NC_008577.1 2618924 2622334 R KEGG: ana:all1974 unknown protein; hypothetical protein complement(2618924..2622334) Shewanella sp. ANA-3 4478387 YP_869820.1 CDS Shewana3_2184 NC_008577.1 2622334 2623602 R hypothetical protein complement(2622334..2623602) Shewanella sp. ANA-3 4478388 YP_869821.1 CDS Shewana3_2186 NC_008577.1 2624185 2624715 R KEGG: sdn:Sden_1948 DNA gyrase, A subunit; Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) subunit A-like protein complement(2624185..2624715) Shewanella sp. ANA-3 4478390 YP_869822.1 CDS Shewana3_2187 NC_008577.1 2624739 2626139 R KEGG: ppr:PBPRA2540 hypothetical protein; hypothetical protein complement(2624739..2626139) Shewanella sp. ANA-3 4478391 YP_869823.1 CDS Shewana3_2188 NC_008577.1 2626142 2629153 R KEGG: ppr:PBPRA2541 hypothetical protein; hypothetical protein complement(2626142..2629153) Shewanella sp. ANA-3 4478392 YP_869824.1 CDS Shewana3_2189 NC_008577.1 2629146 2629949 R KEGG: ppr:PBPRA2542 hypothetical protein; hypothetical protein complement(2629146..2629949) Shewanella sp. ANA-3 4478393 YP_869825.1 CDS Shewana3_2190 NC_008577.1 2630141 2631034 D KEGG: bte:BTH_I1442 hypothetical protein; hypothetical protein 2630141..2631034 Shewanella sp. ANA-3 4478586 YP_869826.1 CDS Shewana3_2191 NC_008577.1 2631322 2632935 D KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 2631322..2632935 Shewanella sp. ANA-3 4478587 YP_869827.1 CDS Shewana3_2192 NC_008577.1 2633205 2633495 R KEGG: sdn:Sden_1900 NADH:flavin oxidoreductase/NADH oxidase; hypothetical protein complement(2633205..2633495) Shewanella sp. ANA-3 4478588 YP_869828.1 CDS Shewana3_2193 NC_008577.1 2633518 2633820 R hypothetical protein complement(2633518..2633820) Shewanella sp. ANA-3 4478589 YP_869829.1 CDS Shewana3_2194 NC_008577.1 2634858 2635124 R KEGG: son:SO2515 hypothetical protein; hypothetical protein complement(2634858..2635124) Shewanella sp. ANA-3 4478590 YP_869830.1 CDS Shewana3_2195 NC_008577.1 2635221 2635685 R KEGG: ilo:IL2513 hypothetical protein; hypothetical protein complement(2635221..2635685) Shewanella sp. ANA-3 4478591 YP_869831.1 CDS Shewana3_2196 NC_008577.1 2635685 2636854 R PFAM: PepSY-associated TM helix domain protein; KEGG: ilo:IL2512 uncharacterized iron-regulated membrane protein; PepSY-associated TM helix domain-containing protein complement(2635685..2636854) Shewanella sp. ANA-3 4478592 YP_869832.1 CDS Shewana3_2197 NC_008577.1 2637057 2637953 D PFAM: beta-lactamase domain protein; KEGG: eli:ELI_06065 Zn-dependent hydrolase, glyoxylase family protein; beta-lactamase domain-containing protein 2637057..2637953 Shewanella sp. ANA-3 4478593 YP_869833.1 CDS Shewana3_2198 NC_008577.1 2638294 2639196 D KEGG: son:SO2517 hypothetical protein; hypothetical protein 2638294..2639196 Shewanella sp. ANA-3 4478594 YP_869834.1 CDS Shewana3_2199 NC_008577.1 2639207 2639989 R KEGG: son:SO2518 hypothetical protein; hypothetical protein complement(2639207..2639989) Shewanella sp. ANA-3 4478595 YP_869835.1 CDS Shewana3_2200 NC_008577.1 2640081 2642006 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ppr:PBPRA0685 hypothetical protein; response regulator receiver protein complement(2640081..2642006) Shewanella sp. ANA-3 4478596 YP_869836.1 CDS Shewana3_2201 NC_008577.1 2642294 2643496 R PFAM: EAL domain protein; response regulator receiver; KEGG: ppr:PBPRA0684 hypothetical protein; response regulator receiver modulated diguanylate phosphodiesterase complement(2642294..2643496) Shewanella sp. ANA-3 4478597 YP_869837.1 CDS Shewana3_2202 NC_008577.1 2643493 2644374 R KEGG: ppr:PBPRA0683 hypothetical protein; XRE family transcriptional regulator complement(2643493..2644374) Shewanella sp. ANA-3 4478598 YP_869838.1 CDS Shewana3_2203 NC_008577.1 2644424 2644717 R hypothetical protein complement(2644424..2644717) Shewanella sp. ANA-3 4478599 YP_869839.1 CDS Shewana3_2204 NC_008577.1 2644839 2646047 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMc00744 putative transport protein transmembrane; Bcr/CflA subfamily drug resistance transporter complement(2644839..2646047) Shewanella sp. ANA-3 4478600 YP_869840.1 CDS Shewana3_2205 NC_008577.1 2646442 2647620 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: son:SO2519 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2646442..2647620) Shewanella sp. ANA-3 4478601 YP_869841.1 CDS Shewana3_2206 NC_008577.1 2647620 2648585 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2520 GGDEF domain protein; diguanylate cyclase complement(2647620..2648585) Shewanella sp. ANA-3 4478602 YP_869842.1 CDS Shewana3_2207 NC_008577.1 2649216 2652050 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2523 hypothetical TonB-dependent receptor; TonB-dependent receptor 2649216..2652050 Shewanella sp. ANA-3 4478603 YP_869843.1 CDS Shewana3_2208 NC_008577.1 2652076 2654037 D PFAM: phytase; KEGG: son:SO2524 phytase, putative; phytase 2652076..2654037 Shewanella sp. ANA-3 4478604 YP_869844.1 CDS Shewana3_2209 NC_008577.1 2654270 2655862 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO2525 ABC transporter, ATP-binding protein; ABC transporter-like protein 2654270..2655862 Shewanella sp. ANA-3 4478605 YP_869845.1 CDS Shewana3_2210 NC_008577.1 2656020 2656469 R PFAM: Activator of Hsp90 ATPase family protein; KEGG: dar:Daro_4073 hypothetical protein; activator of Hsp90 ATPase family protein complement(2656020..2656469) Shewanella sp. ANA-3 4478606 YP_869846.1 CDS Shewana3_2211 NC_008577.1 2656568 2657629 R PFAM: NERD domain protein; KEGG: msu:MS2110 hypothetical protein; NERD domain-containing protein complement(2656568..2657629) Shewanella sp. ANA-3 4478607 YP_869847.1 CDS Shewana3_2212 NC_008577.1 2657947 2659578 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; Hpt domain protein; KEGG: son:SO2127 response regulator; response regulator receiver modulated diguanylate cyclase 2657947..2659578 Shewanella sp. ANA-3 4478608 YP_869848.1 CDS Shewana3_2213 NC_008577.1 2659747 2660802 R PFAM: CheB methylesterase; response regulator receiver; KEGG: son:SO2126 protein-glutamate methylesterase CheB; response regulator receiver modulated CheB methylesterase complement(2659747..2660802) Shewanella sp. ANA-3 4478609 YP_869849.1 CDS Shewana3_2214 NC_008577.1 2660806 2661426 R catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD complement(2660806..2661426) Shewanella sp. ANA-3 4478610 YP_869850.1 CDS Shewana3_2215 NC_008577.1 2661427 2662257 R PFAM: MCP methyltransferase, CheR-type; KEGG: son:SO2124 chemotaxis protein methyltransferase CheR; chemotaxis protein CheR complement(2661427..2662257) Shewanella sp. ANA-3 4478611 YP_869851.1 CDS Shewana3_2216 NC_008577.1 2662258 2664231 R PFAM: chemotaxis sensory transducer; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: son:SO2123 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2662258..2664231) Shewanella sp. ANA-3 4478612 YP_869852.1 CDS Shewana3_2217 NC_008577.1 2664237 2664749 R PFAM: CheW domain protein; KEGG: son:SO2122 purine-binding chemotaxis protein CheW; CheW protein complement(2664237..2664749) Shewanella sp. ANA-3 4478613 YP_869853.1 CDS Shewana3_2218 NC_008577.1 2664764 2666878 R PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: son:SO2121 chemotaxis protein CheA; CheA signal transduction histidine kinase complement(2664764..2666878) Shewanella sp. ANA-3 4478614 YP_869854.1 CDS Shewana3_2219 NC_008577.1 2666897 2667262 R PFAM: response regulator receiver; KEGG: son:SO2120 chemotaxis protein CheY; response regulator receiver protein complement(2666897..2667262) Shewanella sp. ANA-3 4478615 YP_869855.1 CDS Shewana3_2220 NC_008577.1 2667263 2668960 R PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: son:SO2119 response regulator; response regulator receiver protein complement(2667263..2668960) Shewanella sp. ANA-3 4478616 YP_869856.1 CDS Shewana3_2221 NC_008577.1 2668961 2669254 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: son:SO2118 SpoIIAA family protein; anti-sigma-factor antagonist complement(2668961..2669254) Shewanella sp. ANA-3 4478617 YP_869857.1 CDS Shewana3_2222 NC_008577.1 2669269 2670405 R PFAM: chemotaxis sensory transducer; KEGG: son:SO2117 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2669269..2670405) Shewanella sp. ANA-3 4478618 YP_869858.1 CDS Shewana3_2223 NC_008577.1 2670680 2673394 D PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: son:SO2116 acetyltransferase, GNAT family; CoA-binding domain-containing protein 2670680..2673394 Shewanella sp. ANA-3 4478619 YP_869859.1 CDS Shewana3_2224 NC_008577.1 2673518 2675098 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mlr8233 efflux pump protein FarB; EmrB/QacA family drug resistance transporter complement(2673518..2675098) Shewanella sp. ANA-3 4478620 YP_869860.1 CDS Shewana3_2225 NC_008577.1 2675095 2676150 R PFAM: secretion protein HlyD family protein; KEGG: ret:RHE_CH03357 probable protein secretion protein, HlyD family; secretion protein HlyD family protein complement(2675095..2676150) Shewanella sp. ANA-3 4478621 YP_869861.1 CDS Shewana3_2226 NC_008577.1 2676208 2676642 R PFAM: regulatory protein, MarR; KEGG: ret:RHE_CH03358 probable transcriptional regulator protein, MarR family; MarR family transcriptional regulator complement(2676208..2676642) Shewanella sp. ANA-3 4478622 YP_869862.1 CDS Shewana3_2227 NC_008577.1 2676883 2677911 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2049 GGDEF family protein; diguanylate cyclase complement(2676883..2677911) Shewanella sp. ANA-3 4478623 YP_869863.1 CDS Shewana3_2228 NC_008577.1 2678067 2679692 R PFAM: sulfatase; protein of unknown function DUF1705; KEGG: son:SO2048 membrane protein, putative; sulfatase complement(2678067..2679692) Shewanella sp. ANA-3 4478624 YP_869864.1 CDS Shewana3_2229 NC_008577.1 2679951 2682044 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: son:SO2047 prolyl oligopeptidase family protein; peptidase S9 prolyl oligopeptidase complement(2679951..2682044) Shewanella sp. ANA-3 4478625 YP_869865.1 CDS Shewana3_2230 NC_008577.1 2682292 2682753 R PFAM: regulatory protein, MarR; KEGG: son:SO2046 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(2682292..2682753) Shewanella sp. ANA-3 4478626 YP_869866.1 CDS Shewana3_2231 NC_008577.1 2682753 2684003 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: son:SO2045 cation efflux family protein; cation diffusion facilitator family transporter complement(2682753..2684003) Shewanella sp. ANA-3 4478627 YP_869867.1 CDS Shewana3_2232 NC_008577.1 2684707 2685117 D TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO2044 lactoylglutathione lyase; lactoylglutathione lyase 2684707..2685117 Shewanella sp. ANA-3 4478628 YP_869868.1 CDS Shewana3_2233 NC_008577.1 2685209 2685856 R in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ complement(2685209..2685856) Shewanella sp. ANA-3 4478629 YP_869869.1 CDS Shewana3_2234 NC_008577.1 2685968 2687002 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY complement(2685968..2687002) Shewanella sp. ANA-3 4478630 YP_869870.1 CDS Shewana3_2235 NC_008577.1 2687277 2688842 D PFAM: protein of unknown function DUF195; KEGG: son:SO2041 hypothetical protein; hypothetical protein 2687277..2688842 Shewanella sp. ANA-3 4478631 YP_869871.1 CDS Shewana3_2236 NC_008577.1 2688936 2690861 D PFAM: Lytic transglycosylase, catalytic; KEGG: son:SO2040 soluble lytic murein transglycosylase, putative; lytic transglycosylase, catalytic 2688936..2690861 Shewanella sp. ANA-3 4478632 YP_869872.1 CDS Shewana3_2237 NC_008577.1 2691076 2691777 D PFAM: EAL domain protein; KEGG: son:SO2039 hypothetical protein; diguanylate phosphodiesterase 2691076..2691777 Shewanella sp. ANA-3 4478633 YP_869873.1 CDS Shewana3_2238 NC_008577.1 2692598 2692966 D KEGG: xoo:XOO2925 hypothetical protein; hypothetical protein 2692598..2692966 Shewanella sp. ANA-3 4478634 YP_869874.1 CDS Shewana3_2239 NC_008577.1 2693093 2693545 D PFAM: GCN5-related N-acetyltransferase; KEGG: lic:LIC13189 acetyltransferase; N-acetyltransferase GCN5 2693093..2693545 Shewanella sp. ANA-3 4478635 YP_869875.1 CDS Shewana3_2240 NC_008577.1 2693621 2694487 D hypothetical protein 2693621..2694487 Shewanella sp. ANA-3 4478636 YP_869876.1 CDS Shewana3_2241 NC_008577.1 2695078 2695512 D hypothetical protein 2695078..2695512 Shewanella sp. ANA-3 4478637 YP_869877.1 CDS Shewana3_2242 NC_008577.1 2695929 2696870 D PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: son:SO2153 MoxR protein; ATPase 2695929..2696870 Shewanella sp. ANA-3 4477667 YP_869878.1 CDS Shewana3_2243 NC_008577.1 2696921 2698006 D PFAM: protein of unknown function DUF58; KEGG: son:SO2151 hypothetical protein; hypothetical protein 2696921..2698006 Shewanella sp. ANA-3 4477668 YP_869879.1 CDS Shewana3_2244 NC_008577.1 2698003 2700150 D PFAM: transglutaminase domain protein; KEGG: son:SO2150 transglutaminase family protein; transglutaminase domain-containing protein 2698003..2700150 Shewanella sp. ANA-3 4477669 YP_869880.1 CDS Shewana3_2245 NC_008577.1 2700260 2703964 D TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: son:SO2149 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma 2700260..2703964 Shewanella sp. ANA-3 4477670 YP_869881.1 CDS Shewana3_2246 NC_008577.1 2703964 2707755 D TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: son:SO2148 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 2703964..2707755 Shewanella sp. ANA-3 4477671 YP_869882.1 CDS Shewana3_2247 NC_008577.1 2707752 2709857 D TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: son:SO2147 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha 2707752..2709857 Shewanella sp. ANA-3 4477672 YP_869883.1 CDS Shewana3_2248 NC_008577.1 2709925 2710320 D KEGG: son:SO2146 hypothetical protein; hypothetical protein 2709925..2710320 Shewanella sp. ANA-3 4477673 YP_869884.1 CDS Shewana3_2249 NC_008577.1 2710401 2711054 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dsy:DSY4339 hypothetical protein; type 12 methyltransferase 2710401..2711054 Shewanella sp. ANA-3 4477674 YP_869885.1 CDS Shewana3_2250 NC_008577.1 2711588 2712895 D KEGG: pae:PA1930 probable chemotaxis transducer; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 2711588..2712895 Shewanella sp. ANA-3 4477675 YP_869886.1 CDS Shewana3_2251 NC_008577.1 2713015 2713704 D KEGG: son:SO2245 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2713015..2713704 Shewanella sp. ANA-3 4477676 YP_869887.1 CDS Shewana3_2252 NC_008577.1 2713809 2714849 R PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: son:SO2244 transcriptional regulator, LacI family; LacI family transcriptional regulator complement(2713809..2714849) Shewanella sp. ANA-3 4477677 YP_869888.1 CDS Shewana3_2253 NC_008577.1 2715068 2715784 R KEGG: son:SO2241 hypothetical protein; hypothetical protein complement(2715068..2715784) Shewanella sp. ANA-3 4477678 YP_869889.1 CDS Shewana3_2254 NC_008577.1 2716134 2717771 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: son:SO2240 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2716134..2717771 Shewanella sp. ANA-3 4477679 YP_869890.1 CDS Shewana3_2255 NC_008577.1 2717932 2718327 D KEGG: son:SO2239 hypothetical protein; hypothetical protein 2717932..2718327 Shewanella sp. ANA-3 4477680 YP_869891.1 CDS Shewana3_2256 NC_008577.1 2718351 2718608 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: son:SO2238 phosphocarrier protein HPr; HPr family phosphocarrier protein 2718351..2718608 Shewanella sp. ANA-3 4477681 YP_869892.1 CDS Shewana3_2257 NC_008577.1 2718641 2720344 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: son:SO2237 phosphotransferase system, enzyme I; phosphoenolpyruvate--protein phosphotransferase 2718641..2720344 Shewanella sp. ANA-3 4477682 YP_869893.1 CDS Shewana3_2258 NC_008577.1 2720417 2720926 D functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter 2720417..2720926 Shewanella sp. ANA-3 4477683 YP_869894.1 CDS Shewana3_2259 NC_008577.1 2721069 2721431 R KEGG: son:SO2234 hypothetical protein; hypothetical protein complement(2721069..2721431) Shewanella sp. ANA-3 4477684 YP_869895.1 CDS Shewana3_2260 NC_008577.1 2721519 2722034 R KEGG: son:SO2291 hypothetical protein; hypothetical protein complement(2721519..2722034) Shewanella sp. ANA-3 4477685 YP_869896.1 CDS Shewana3_2261 NC_008577.1 2722468 2723460 R PFAM: Rhodanese domain protein; KEGG: son:SO2290 rhodanese domain protein; hypothetical protein complement(2722468..2723460) Shewanella sp. ANA-3 4477686 YP_869897.1 CDS Shewana3_2262 NC_008577.1 2723734 2724405 D PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: son:SO2288 glutathione-S-transferase domain protein; glutathione S-transferase domain-containing protein 2723734..2724405 Shewanella sp. ANA-3 4477687 YP_869898.1 CDS Shewana3_2263 NC_008577.1 2724527 2724751 D hypothetical protein 2724527..2724751 Shewanella sp. ANA-3 4477688 YP_869899.1 CDS Shewana3_2264 NC_008577.1 2724842 2726599 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: son:SO2286 sulfate permease family protein; sulfate transporter complement(2724842..2726599) Shewanella sp. ANA-3 4477689 YP_869900.1 CDS Shewana3_2265 NC_008577.1 2726793 2727419 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO2285 hypothetical protein; lysine exporter protein LysE/YggA complement(2726793..2727419) Shewanella sp. ANA-3 4477690 YP_869901.1 CDS Shewana3_2266 NC_008577.1 2727488 2728870 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: son:SO2282 transcriptional regulator, GntR family; GntR family transcriptional regulator 2727488..2728870 Shewanella sp. ANA-3 4477691 YP_869902.1 CDS Shewana3_2267 NC_008577.1 2729003 2730877 R KEGG: son:SO2281 alkaline phosphatase; alkaline phosphatase complement(2729003..2730877) Shewanella sp. ANA-3 4477692 YP_869903.1 CDS Shewana3_2268 NC_008577.1 2731359 2732582 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO2280 bicyclomycin resistance protein; Bcr/CflA subfamily drug resistance transporter 2731359..2732582 Shewanella sp. ANA-3 4477693 YP_869904.1 CDS Shewana3_2269 NC_008577.1 2733051 2734769 D TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: son:SO2279 acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit 2733051..2734769 Shewanella sp. ANA-3 4477694 YP_869905.1 CDS ilvH NC_008577.1 2734769 2735263 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2734769..2735263 Shewanella sp. ANA-3 4477695 YP_869906.1 CDS Shewana3_2271 NC_008577.1 2735398 2735841 R PFAM: heat shock protein Hsp20; KEGG: son:SO2277 16 kDa heat shock protein A; heat shock protein Hsp20 complement(2735398..2735841) Shewanella sp. ANA-3 4477696 YP_869907.1 CDS ndk NC_008577.1 2736146 2736577 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(2736146..2736577) Shewanella sp. ANA-3 4477697 YP_869908.1 CDS Shewana3_2273 NC_008577.1 2737162 2737359 R PFAM: protein of unknown function DUF528; KEGG: son:SO2271 hypothetical protein; hypothetical protein complement(2737162..2737359) Shewanella sp. ANA-3 4477698 YP_869909.1 CDS Shewana3_2274 NC_008577.1 2737428 2738327 R TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO2270 ribosomal protein S6 modification protein; 30S ribosomal protein S6 modification protein RimK complement(2737428..2738327) Shewanella sp. ANA-3 4477699 YP_869910.1 CDS Shewana3_2275 NC_008577.1 2738483 2738818 R TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: son:SO2269 ferredoxin, 2Fe-2S; ferredoxin, 2Fe-2S type, ISC system complement(2738483..2738818) Shewanella sp. ANA-3 4477700 YP_869911.1 CDS hscA NC_008577.1 2738827 2740689 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(2738827..2740689) Shewanella sp. ANA-3 4477701 YP_869912.1 CDS hscB NC_008577.1 2740757 2741281 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB complement(2740757..2741281) Shewanella sp. ANA-3 4477702 YP_869913.1 CDS Shewana3_2278 NC_008577.1 2741297 2741620 R TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: son:SO2266 HesB/YadR/YfhF family protein; iron-sulfur cluster assembly protein IscA complement(2741297..2741620) Shewanella sp. ANA-3 4477703 YP_869914.1 CDS Shewana3_2279 NC_008577.1 2741635 2742018 R TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: son:SO2265 NifU family protein; scaffold protein complement(2741635..2742018) Shewanella sp. ANA-3 4477704 YP_869915.1 CDS Shewana3_2280 NC_008577.1 2742056 2743270 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase complement(2742056..2743270) Shewanella sp. ANA-3 4477705 YP_869916.1 CDS Shewana3_2281 NC_008577.1 2743349 2743810 R TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: son:SO2263 Rrf2 family protein; BadM/Rrf2 family transcriptional regulator complement(2743349..2743810) Shewanella sp. ANA-3 4478038 YP_869917.1 CDS Shewana3_2282 NC_008577.1 2744161 2744982 R TIGRFAM: serine O-acetyltransferase; KEGG: son:SO2262 serine acetyltransferase; serine O-acetyltransferase complement(2744161..2744982) Shewanella sp. ANA-3 4478039 YP_869918.1 CDS Shewana3_2283 NC_008577.1 2745028 2745753 R TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO2261 RNA methyltransferase, TrmH family, group 1; RNA methyltransferase complement(2745028..2745753) Shewanella sp. ANA-3 4478040 YP_869919.1 CDS Shewana3_2284 NC_008577.1 2745908 2746711 D PFAM: inositol monophosphatase; KEGG: son:SO2260 extragenic suppressor protein SuhB; inositol monophosphatase 2745908..2746711 Shewanella sp. ANA-3 4478041 YP_869920.1 CDS Shewana3_2285 NC_008577.1 2746851 2748101 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: son:SO2259 lipoprotein releasing system transmembrane protein LolC, putative; LolC/E family lipoprotein releasing system, transmembrane protein complement(2746851..2748101) Shewanella sp. ANA-3 4478042 YP_869921.1 CDS Shewana3_2286 NC_008577.1 2748098 2748859 R KEGG: son:SO2258 lipoprotein releasing system ATP-binding protein LolD; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein complement(2748098..2748859) Shewanella sp. ANA-3 4478043 YP_869922.1 CDS Shewana3_2287 NC_008577.1 2748891 2750123 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: son:SO2257 lipoprotein releasing system transmembrane protein LolE; LolC/E family lipoprotein releasing system, transmembrane protein complement(2748891..2750123) Shewanella sp. ANA-3 4478044 YP_869923.1 CDS Shewana3_2288 NC_008577.1 2750218 2750838 D KEGG: son:SO2256 hypothetical protein; hypothetical protein 2750218..2750838 Shewanella sp. ANA-3 4478045 YP_869924.1 CDS Shewana3_2289 NC_008577.1 2750925 2754407 D TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO2255 transcription-repair coupling factor; transcription-repair coupling factor 2750925..2754407 Shewanella sp. ANA-3 4478046 YP_869925.1 CDS Shewana3_2290 NC_008577.1 2754407 2755432 D KEGG: son:SO2254 hypothetical protein; hypothetical protein 2754407..2755432 Shewanella sp. ANA-3 4478047 YP_869926.1 CDS Shewana3_2291 NC_008577.1 2755560 2755832 R catalyzes the hydrolysis of acylphosphate; acylphosphatase complement(2755560..2755832) Shewanella sp. ANA-3 4478048 YP_869927.1 CDS Shewana3_2292 NC_008577.1 2756429 2756968 R PFAM: protein of unknown function UPF0227; KEGG: son:SO2251 conserved hypothetical protein; hypothetical protein complement(2756429..2756968) Shewanella sp. ANA-3 4478049 YP_869928.1 CDS Shewana3_2293 NC_008577.1 2757050 2758078 R hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase complement(2757050..2758078) Shewanella sp. ANA-3 4478050 YP_869929.1 CDS Shewana3_2294 NC_008577.1 2758183 2758470 D KEGG: son:SO2249 hypothetical protein; hypothetical protein 2758183..2758470 Shewanella sp. ANA-3 4478051 YP_869930.1 CDS Shewana3_2295 NC_008577.1 2758463 2759839 D TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: son:SO2248 L-serine dehydratase 1; L-serine ammonia-lyase 2758463..2759839 Shewanella sp. ANA-3 4478052 YP_869931.1 CDS Shewana3_2296 NC_008577.1 2759951 2760688 R KEGG: son:SO2247 hypothetical protein; hypothetical protein complement(2759951..2760688) Shewanella sp. ANA-3 4478053 YP_869932.1 CDS Shewana3_2297 NC_008577.1 2761088 2761480 D KEGG: pst:PSPTO4510 ISPsy11, transposase OrfA; ISPsy11, transposase OrfA 2761088..2761480 Shewanella sp. ANA-3 4478054 YP_869933.1 CDS Shewana3_2298 NC_008577.1 2761582 2762304 D PFAM: Integrase, catalytic region; KEGG: pfo:Pfl_2131 integrase, catalytic region; integrase catalytic subunit 2761582..2762304 Shewanella sp. ANA-3 4478055 YP_869934.1 CDS Shewana3_2299 NC_008577.1 2762417 2763352 R KEGG: son:SO2225 hypothetical protein; hypothetical protein complement(2762417..2763352) Shewanella sp. ANA-3 4478056 YP_869935.1 CDS Shewana3_2300 NC_008577.1 2763408 2763866 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2224 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(2763408..2763866) Shewanella sp. ANA-3 4478057 YP_869936.1 CDS Shewana3_2301 NC_008577.1 2764004 2766067 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: son:SO2223 peptidase, putative; peptidase S9 prolyl oligopeptidase complement(2764004..2766067) Shewanella sp. ANA-3 4478058 YP_869937.1 CDS Shewana3_2302 NC_008577.1 2766330 2767874 R TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: son:SO2222 fumarate hydratase, class I, anaerobic, putative; fumarase complement(2766330..2767874) Shewanella sp. ANA-3 4478059 YP_869938.1 CDS Shewana3_2303 NC_008577.1 2767996 2769399 D TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: son:SO2221 para-aminobenzoate synthase, component I; aminodeoxychorismate synthase subunit I 2767996..2769399 Shewanella sp. ANA-3 4478060 YP_869939.1 CDS Shewana3_2304 NC_008577.1 2769425 2770012 D PFAM: NUDIX hydrolase; KEGG: son:SO2220 MutT/nudix family protein; NUDIX hydrolase 2769425..2770012 Shewanella sp. ANA-3 4478061 YP_869940.1 CDS Shewana3_2305 NC_008577.1 2770037 2770372 R KEGG: son:SO2219 hypothetical protein; hypothetical protein complement(2770037..2770372) Shewanella sp. ANA-3 4478062 YP_869941.1 CDS asnC NC_008577.1 2770524 2771924 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2770524..2771924 Shewanella sp. ANA-3 4478063 YP_869942.1 CDS ddl NC_008577.1 2772189 2773199 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 2772189..2773199 Shewanella sp. ANA-3 4478064 YP_869943.1 CDS Shewana3_2308 NC_008577.1 2773278 2775536 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-4 domain protein; KEGG: son:SO2216 sensory box protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(2773278..2775536) Shewanella sp. ANA-3 4478065 YP_869944.1 CDS Shewana3_2309 NC_008577.1 2775688 2776902 R PFAM: Fmu (Sun) domain protein; KEGG: son:SO2215 sun protein, putative; Fmu (Sun) domain-containing protein complement(2775688..2776902) Shewanella sp. ANA-3 4478066 YP_869945.1 CDS Shewana3_2310 NC_008577.1 2777055 2778326 R TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: bmb:BruAb2_0185 glucose/galactose transporter; glucose/galactose transporter complement(2777055..2778326) Shewanella sp. ANA-3 4478067 YP_869946.1 CDS Shewana3_2311 NC_008577.1 2778452 2780074 R PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: son:SO2213 alpha-glucosidase; alpha amylase complement(2778452..2780074) Shewanella sp. ANA-3 4478068 YP_869947.1 CDS Shewana3_2312 NC_008577.1 2780573 2783398 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2162 TonB dependent receptor-related protein; TonB-dependent receptor 2780573..2783398 Shewanella sp. ANA-3 4478069 YP_869948.1 CDS Shewana3_2313 NC_008577.1 2783465 2785525 D PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: pha:PSHAa1354 alpha-amylase; alpha amylase 2783465..2785525 Shewanella sp. ANA-3 4478070 YP_869949.1 CDS Shewana3_2314 NC_008577.1 2785613 2787742 D PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: son:SO2156 alpha amylase family protein; alpha amylase 2785613..2787742 Shewanella sp. ANA-3 4478071 YP_869950.1 CDS Shewana3_2315 NC_008577.1 2787858 2788286 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO2155 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 2787858..2788286 Shewanella sp. ANA-3 4478072 YP_869951.1 CDS Shewana3_2316 NC_008577.1 2788359 2788658 D KEGG: cps:CPS_2680 hypothetical protein; hypothetical protein 2788359..2788658 Shewanella sp. ANA-3 4478073 YP_869952.1 CDS Shewana3_2317 NC_008577.1 2789700 2790071 R hypothetical protein complement(2789700..2790071) Shewanella sp. ANA-3 4478074 YP_869953.1 CDS Shewana3_2318 NC_008577.1 2791094 2791942 R KEGG: son:SO2529 hypothetical protein; hypothetical protein complement(2791094..2791942) Shewanella sp. ANA-3 4478075 YP_869954.1 CDS def NC_008577.1 2792153 2792644 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(2792153..2792644) Shewanella sp. ANA-3 4478076 YP_869955.1 CDS Shewana3_2320 NC_008577.1 2792837 2793295 D PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: son:SO2532 methylated-DNA--protein-cysteine methyltransferase, putative; methylated-DNA--protein-cysteine methyltransferase 2792837..2793295 Shewanella sp. ANA-3 4478077 YP_869956.1 CDS Shewana3_2321 NC_008577.1 2793425 2794237 D KEGG: son:SO2533 hypothetical protein; hypothetical protein 2793425..2794237 Shewanella sp. ANA-3 4478078 YP_869957.1 CDS Shewana3_2322 NC_008577.1 2794401 2795240 R PFAM: glutamine amidotransferase, class-II; KEGG: son:SO2535 hypothetical amidotransferase; glutamine amidotransferase, class-II complement(2794401..2795240) Shewanella sp. ANA-3 4478079 YP_869958.1 CDS fadE NC_008577.1 2795424 2797871 D functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2795424..2797871 Shewanella sp. ANA-3 4478080 YP_869959.1 CDS Shewana3_2324 NC_008577.1 2798036 2800048 R PFAM: sodium/hydrogen exchanger; KEGG: son:SO2537 sodium/hydrogen exchanger family protein; sodium/hydrogen exchanger complement(2798036..2800048) Shewanella sp. ANA-3 4478081 YP_869960.1 CDS Shewana3_2325 NC_008577.1 2800606 2802219 R KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase complement(2800606..2802219) Shewanella sp. ANA-3 4478082 YP_869961.1 CDS Shewana3_2326 NC_008577.1 2802927 2803856 R KEGG: pst:PSPTO1858 hypothetical protein; hypothetical protein complement(2802927..2803856) Shewanella sp. ANA-3 4478083 YP_869962.1 CDS Shewana3_2327 NC_008577.1 2803958 2804908 D PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: xcb:XC_1752 transcriptional regulator AraC family; transcriptional regulator 2803958..2804908 Shewanella sp. ANA-3 4478084 YP_869963.1 CDS Shewana3_2328 NC_008577.1 2805218 2805493 R KEGG: hch:HCH_00506 hypothetical protein; hypothetical protein complement(2805218..2805493) Shewanella sp. ANA-3 4478085 YP_869964.1 CDS Shewana3_2329 NC_008577.1 2805626 2806864 R PFAM: major facilitator superfamily MFS_1; KEGG: vvu:VV11143 permease of the major facilitator superfamily; major facilitator superfamily transporter complement(2805626..2806864) Shewanella sp. ANA-3 4478086 YP_869965.1 CDS Shewana3_2330 NC_008577.1 2806888 2807898 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase complement(2806888..2807898) Shewanella sp. ANA-3 4478087 YP_869966.1 CDS Shewana3_2331 NC_008577.1 2807973 2808464 R SMART: protein tyrosine phosphatase, catalytic region; KEGG: ppu:PP1926 phosphatase family protein, putative; protein tyrosine phosphatase, catalytic region complement(2807973..2808464) Shewanella sp. ANA-3 4478088 YP_869967.1 CDS Shewana3_2332 NC_008577.1 2808471 2808707 R KEGG: cps:CPS_3356 redox-active disulfide protein 2; redox-active disulfide protein 2 complement(2808471..2808707) Shewanella sp. ANA-3 4478089 YP_869968.1 CDS Shewana3_2333 NC_008577.1 2808718 2809716 R PFAM: permease; KEGG: cps:CPS_3357 putative permease; permease complement(2808718..2809716) Shewanella sp. ANA-3 4478090 YP_869969.1 CDS Shewana3_2334 NC_008577.1 2809813 2810319 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: son:SO0533 arsenate reductase, putative; protein tyrosine phosphatase complement(2809813..2810319) Shewanella sp. ANA-3 4478091 YP_869970.1 CDS Shewana3_2335 NC_008577.1 2810398 2810745 R PFAM: regulatory protein, ArsR; KEGG: son:SO0532 arsenical resistence operon repressor; ArsR family transcriptional regulator complement(2810398..2810745) Shewanella sp. ANA-3 4478092 YP_869971.1 CDS Shewana3_2336 NC_008577.1 2810738 2811154 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cps:CPS_3358 transcriptional regulator, ArsR family; protein tyrosine phosphatase complement(2810738..2811154) Shewanella sp. ANA-3 4478093 YP_869972.1 CDS Shewana3_2337 NC_008577.1 2811250 2811537 R PFAM: regulatory protein, ArsR; KEGG: son:SO0502 transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(2811250..2811537) Shewanella sp. ANA-3 4478094 YP_869973.1 CDS Shewana3_2338 NC_008577.1 2811782 2812858 D PFAM: permease; KEGG: son:SO0503 hypothetical protein; permease 2811782..2812858 Shewanella sp. ANA-3 4478095 YP_869974.1 CDS Shewana3_2339 NC_008577.1 2812988 2814445 D PFAM: glutathione synthase, ATP-binding; KEGG: vfi:VF0976 glutathione synthetase; glutathione synthase 2812988..2814445 Shewanella sp. ANA-3 4478096 YP_869975.1 CDS Shewana3_2340 NC_008577.1 2814516 2815220 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dsy:DSY4609 putative oxidoreductase iron-sulfur subunit; 4Fe-4S ferredoxin complement(2814516..2815220) Shewanella sp. ANA-3 4478097 YP_869976.1 CDS Shewana3_2341 NC_008577.1 2815232 2817796 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dsy:DSY4131 putative anaerobic dehydrogenase; molybdopterin oxidoreductase complement(2815232..2817796) Shewanella sp. ANA-3 4478098 YP_869977.1 CDS Shewana3_2342 NC_008577.1 2818161 2818523 D PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: dar:Daro_2638 arsenical resistance operon trans-acting repressor ArsD; arsenical resistance operon trans-acting repressor ArsD 2818161..2818523 Shewanella sp. ANA-3 4478099 YP_869978.1 CDS Shewana3_2343 NC_008577.1 2818546 2820312 D KEGG: dar:Daro_2637 anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase; arsenite-activated ATPase ArsA 2818546..2820312 Shewanella sp. ANA-3 4478100 YP_869979.1 CDS Shewana3_2344 NC_008577.1 2820383 2821666 D TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: sbo:SBO_3500 arsenical pump membrane protein; arsenical pump membrane protein 2820383..2821666 Shewanella sp. ANA-3 4478101 YP_869980.1 CDS Shewana3_2345 NC_008577.1 2821787 2822263 D TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: sbo:SBO_3501 arsenate reductase; arsenate reductase 2821787..2822263 Shewanella sp. ANA-3 4478102 YP_869981.1 CDS Shewana3_2346 NC_008577.1 2822377 2825451 R PFAM: acriflavin resistance protein; KEGG: ava:Ava_2544 acriflavin resistance protein; acriflavin resistance protein complement(2822377..2825451) Shewanella sp. ANA-3 4478103 YP_869982.1 CDS Shewana3_2347 NC_008577.1 2825448 2826572 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: xac:XAC2064 cation efflux system protein; RND family efflux transporter MFP subunit complement(2825448..2826572) Shewanella sp. ANA-3 4478104 YP_869983.1 CDS Shewana3_2348 NC_008577.1 2826617 2827315 R PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: mhu:Mhun_0868 putative cytochrome c biogenesis protein; cytochrome c biogenesis protein, transmembrane region complement(2826617..2827315) Shewanella sp. ANA-3 4478105 YP_869984.1 CDS Shewana3_2349 NC_008577.1 2827308 2827841 R KEGG: mhu:Mhun_0869 hypothetical protein; hypothetical protein complement(2827308..2827841) Shewanella sp. ANA-3 4478106 YP_869985.1 CDS Shewana3_2350 NC_008577.1 2827860 2828102 R TIGRFAM: redox-active disulfide protein 2; KEGG: plt:Plut_1705 redox-active disulfide protein 2; redox-active disulfide protein 2 complement(2827860..2828102) Shewanella sp. ANA-3 4478107 YP_869986.1 CDS Shewana3_2351 NC_008577.1 2828163 2828471 R PFAM: regulatory protein, ArsR; KEGG: dps:DP0944 similar to ArsR-family transcription regulator; ArsR family transcriptional regulator complement(2828163..2828471) Shewanella sp. ANA-3 4479584 YP_869987.1 CDS Shewana3_2352 NC_008577.1 2829036 2829650 D hypothetical protein 2829036..2829650 Shewanella sp. ANA-3 4479585 YP_869988.1 CDS Shewana3_2353 NC_008577.1 2829650 2831923 D hypothetical protein 2829650..2831923 Shewanella sp. ANA-3 4479586 YP_869989.1 CDS Shewana3_2354 NC_008577.1 2831908 2835000 D PFAM: phage integrase family protein; KEGG: tcx:Tcr_2093 hypothetical protein; phage integrase family protein 2831908..2835000 Shewanella sp. ANA-3 4479587 YP_869990.1 CDS Shewana3_2355 NC_008577.1 2835013 2835888 R PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(2835013..2835888) Shewanella sp. ANA-3 4479588 YP_869991.1 CDS Shewana3_2356 NC_008577.1 2835885 2837063 R PFAM: phage integrase family protein; KEGG: dar:Daro_1324 phage integrase; phage integrase family protein complement(2835885..2837063) Shewanella sp. ANA-3 4479589 YP_869992.1 CDS Shewana3_2357 NC_008577.1 2837073 2837285 R KEGG: dar:Daro_1323 hypothetical protein; hypothetical protein complement(2837073..2837285) Shewanella sp. ANA-3 4479590 YP_869993.1 CDS Shewana3_2358 NC_008577.1 2837441 2837677 D hypothetical protein 2837441..2837677 Shewanella sp. ANA-3 4479591 YP_869994.1 CDS Shewana3_2359 NC_008577.1 2837756 2838001 D PFAM: transposase IS3/IS911 family protein; KEGG: sfx:S4629 ISEhe3 orfA; transposase IS3/IS911 family protein 2837756..2838001 Shewanella sp. ANA-3 4479592 YP_869995.1 CDS Shewana3_2360 NC_008577.1 2838079 2838426 D KEGG: son:SOA0129 transposase, IS3 family; IS3 family transposase 2838079..2838426 Shewanella sp. ANA-3 4479593 YP_869996.1 CDS Shewana3_2361 NC_008577.1 2838414 2838917 D PFAM: Integrase, catalytic region; KEGG: son:SOA0129 transposase, IS3 family; integrase catalytic subunit 2838414..2838917 Shewanella sp. ANA-3 4479594 YP_869997.1 CDS Shewana3_2362 NC_008577.1 2839141 2840352 D PFAM: NnrS family protein; KEGG: vvy:VV2630 uncharacterized protein conserved in bacteria; NnrS family protein 2839141..2840352 Shewanella sp. ANA-3 4479595 YP_869998.1 CDS Shewana3_2363 NC_008577.1 2840377 2841810 D PFAM: cytochrome c552; KEGG: stm:STM4277 nitrite reductase periplasmic cytochrome c552; cytochrome c552 2840377..2841810 Shewanella sp. ANA-3 4479596 YP_869999.1 CDS Shewana3_2364 NC_008577.1 2842468 2843652 R KEGG: son:SO2557 hypothetical protein; hypothetical protein complement(2842468..2843652) Shewanella sp. ANA-3 4479599 YP_870000.1 CDS Shewana3_2365 NC_008577.1 2844011 2844739 R KEGG: son:SO2559 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(2844011..2844739) Shewanella sp. ANA-3 4479600 YP_870001.1 CDS rnhA NC_008577.1 2844810 2845286 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 2844810..2845286 Shewanella sp. ANA-3 4479601 YP_870002.1 CDS Shewana3_2367 NC_008577.1 2845323 2846222 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2561 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2845323..2846222) Shewanella sp. ANA-3 4479602 YP_870003.1 CDS Shewana3_2368 NC_008577.1 2846246 2846980 R PFAM: Methyltransferase type 11; KEGG: son:SO2562 hypothetical protein; type 11 methyltransferase complement(2846246..2846980) Shewanella sp. ANA-3 4479603 YP_870004.1 CDS Shewana3_2369 NC_008577.1 2847156 2847959 D PFAM: beta-lactamase domain protein; KEGG: son:SO2563 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 2847156..2847959 Shewanella sp. ANA-3 4479604 YP_870005.1 CDS Shewana3_2370 NC_008577.1 2848212 2849759 D PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: son:SO2564 transglycosylase, Slt family; MltD domain-containing protein 2848212..2849759 Shewanella sp. ANA-3 4479605 YP_870006.1 CDS Shewana3_2371 NC_008577.1 2850023 2850682 R KEGG: son:SO2565 intracellular proteinase inhibitor domain protein; intracellular proteinase inhibitor domain-containing protein complement(2850023..2850682) Shewanella sp. ANA-3 4479606 YP_870007.1 CDS Shewana3_2372 NC_008577.1 2850685 2852505 R KEGG: son:SO2566 AsmA protein; AsmA protein complement(2850685..2852505) Shewanella sp. ANA-3 4479607 YP_870008.1 CDS Shewana3_2373 NC_008577.1 2852548 2853042 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(2852548..2853042) Shewanella sp. ANA-3 4479608 YP_870009.1 CDS Shewana3_2374 NC_008577.1 2853262 2853582 D KEGG: son:SO2569 hypothetical protein; hypothetical protein 2853262..2853582 Shewanella sp. ANA-3 4479609 YP_870010.1 CDS Shewana3_2375 NC_008577.1 2853786 2855576 R KEGG: son:SO2570 lipoprotein, putative; putative lipoprotein complement(2853786..2855576) Shewanella sp. ANA-3 4479610 YP_870011.1 CDS Shewana3_2376 NC_008577.1 2855888 2857363 D SMART: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO2571 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 2855888..2857363 Shewanella sp. ANA-3 4479611 YP_870012.1 CDS Shewana3_2377 NC_008577.1 2857409 2857909 D KEGG: son:SO2572 peptidyl-prolyl cis-trans isomerase B; peptidyl-prolyl cis-trans isomerase B 2857409..2857909 Shewanella sp. ANA-3 4479612 YP_870013.1 CDS Shewana3_2378 NC_008577.1 2858100 2859713 D PFAM: iron-containing alcohol dehydrogenase; KEGG: plu:plu4649 transposase, IS4 family; iron-containing alcohol dehydrogenase 2858100..2859713 Shewanella sp. ANA-3 4479613 YP_870014.1 CDS Shewana3_2379 NC_008577.1 2859881 2860339 R KEGG: son:SO2573 hypothetical protein; hypothetical protein complement(2859881..2860339) Shewanella sp. ANA-3 4479614 YP_870015.1 CDS Shewana3_2380 NC_008577.1 2860378 2861379 R KEGG: cps:CPS_3516 putative transglycosylase; putative transglycosylase complement(2860378..2861379) Shewanella sp. ANA-3 4479615 YP_870016.1 CDS Shewana3_2381 NC_008577.1 2861404 2861682 R PFAM: protein of unknown function DUF709; KEGG: son:SO2575 hypothetical protein; hypothetical protein complement(2861404..2861682) Shewanella sp. ANA-3 4479616 YP_870017.1 CDS minC NC_008577.1 2861806 2862471 D blocks the formation of polar Z-ring septums; septum formation inhibitor 2861806..2862471 Shewanella sp. ANA-3 4479617 YP_870018.1 CDS Shewana3_2383 NC_008577.1 2862499 2863308 D TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO2577 septum site-determining protein MinD; septum site-determining protein MinD 2862499..2863308 Shewanella sp. ANA-3 4479618 YP_870019.1 CDS minE NC_008577.1 2863311 2863568 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 2863311..2863568 Shewanella sp. ANA-3 4479619 YP_870020.1 CDS Shewana3_2385 NC_008577.1 2863731 2864897 R TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: son:SO2580 ribonuclease D; ribonuclease D complement(2863731..2864897) Shewanella sp. ANA-3 4479620 YP_870021.1 CDS Shewana3_2386 NC_008577.1 2864912 2866585 R Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(2864912..2866585) Shewanella sp. ANA-3 4479621 YP_870022.1 CDS Shewana3_2387 NC_008577.1 2866785 2867651 R PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: son:SO2582 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold domain-containing protein complement(2866785..2867651) Shewanella sp. ANA-3 4479622 YP_870023.1 CDS Shewana3_2388 NC_008577.1 2867673 2868485 R KEGG: son:SO2583 hypothetical protein; hypothetical protein complement(2867673..2868485) Shewanella sp. ANA-3 4479623 YP_870024.1 CDS Shewana3_2389 NC_008577.1 2868616 2869323 R KEGG: son:SO2584 hypothetical protein; hypothetical protein complement(2868616..2869323) Shewanella sp. ANA-3 4479624 YP_870025.1 CDS Shewana3_2390 NC_008577.1 2869316 2869624 R KEGG: son:SO2585 hypothetical protein; hypothetical protein complement(2869316..2869624) Shewanella sp. ANA-3 4479625 YP_870026.1 CDS Shewana3_2391 NC_008577.1 2869767 2870477 R PFAM: peptidase M22, glycoprotease; KEGG: son:SO2586 hypothetical protein; peptidase M22, glycoprotease complement(2869767..2870477) Shewanella sp. ANA-3 4479626 YP_870027.1 CDS Shewana3_2392 NC_008577.1 2870854 2871852 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 2870854..2871852 Shewanella sp. ANA-3 4479627 YP_870028.1 CDS Shewana3_2393 NC_008577.1 2871948 2872853 R this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein complement(2871948..2872853) Shewanella sp. ANA-3 4479628 YP_870029.1 CDS Shewana3_2394 NC_008577.1 2873231 2874070 D PFAM: 2OG-Fe(II) oxygenase; KEGG: son:SO2589 isopenicillin-N synthase; 2OG-Fe(II) oxygenase 2873231..2874070 Shewanella sp. ANA-3 4479629 YP_870030.1 CDS rbgA NC_008577.1 2874207 2875148 D essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 2874207..2875148 Shewanella sp. ANA-3 4479630 YP_870031.1 CDS Shewana3_2396 NC_008577.1 2875448 2875888 R KEGG: pae:PA4801 hypothetical protein; hypothetical protein complement(2875448..2875888) Shewanella sp. ANA-3 4479631 YP_870032.1 CDS Shewana3_2397 NC_008577.1 2876175 2876732 R KEGG: lic:LIC11419 hypothetical protein; hypothetical protein complement(2876175..2876732) Shewanella sp. ANA-3 4479632 YP_870033.1 CDS Shewana3_2398 NC_008577.1 2876817 2877422 R KEGG: dar:Daro_3432 hypothetical protein; hypothetical protein complement(2876817..2877422) Shewanella sp. ANA-3 4479633 YP_870034.1 CDS Shewana3_2399 NC_008577.1 2878032 2878547 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: son:SO2208 phosphotyrosine protein phosphatase; protein tyrosine phosphatase complement(2878032..2878547) Shewanella sp. ANA-3 4479634 YP_870035.1 CDS Shewana3_2400 NC_008577.1 2878568 2879590 R KEGG: son:SO2207 hypothetical protein; hypothetical protein complement(2878568..2879590) Shewanella sp. ANA-3 4479635 YP_870036.1 CDS Shewana3_2401 NC_008577.1 2879692 2880606 R catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase complement(2879692..2880606) Shewanella sp. ANA-3 4477209 YP_870037.1 CDS Shewana3_2402 NC_008577.1 2880859 2881230 D PFAM: diacylglycerol kinase; KEGG: son:SO2203 diacylglycerol kinase; diacylglycerol kinase 2880859..2881230 Shewanella sp. ANA-3 4477210 YP_870038.1 CDS Shewana3_2403 NC_008577.1 2881382 2882239 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2202 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2881382..2882239) Shewanella sp. ANA-3 4477211 YP_870039.1 CDS Shewana3_2404 NC_008577.1 2882348 2882800 D PFAM: protein of unknown function DUF413; KEGG: son:SO2201 hypothetical protein; hypothetical protein 2882348..2882800 Shewanella sp. ANA-3 4477212 YP_870040.1 CDS Shewana3_2405 NC_008577.1 2882821 2883837 D TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: son:SO2200 ribosomal protein S6 modification protein, putative; alpha-L-glutamate ligase 2882821..2883837 Shewanella sp. ANA-3 4477213 YP_870041.1 CDS Shewana3_2406 NC_008577.1 2884077 2885000 D KEGG: son:SO2199 hypothetical protein; hypothetical protein 2884077..2885000 Shewanella sp. ANA-3 4477214 YP_870042.1 CDS Shewana3_2407 NC_008577.1 2885061 2886686 R PFAM: peptidase M28; KEGG: son:SO2198 hypothetical aminopeptidase; peptidase M28 complement(2885061..2886686) Shewanella sp. ANA-3 4477215 YP_870043.1 CDS Shewana3_2408 NC_008577.1 2886847 2887872 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2197 GGDEF family protein; diguanylate cyclase 2886847..2887872 Shewanella sp. ANA-3 4477216 YP_870044.1 CDS Shewana3_2409 NC_008577.1 2888107 2888700 R TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; KEGG: son:SO2196 LPXTG-site transpeptidase family protein; sortase family protein complement(2888107..2888700) Shewanella sp. ANA-3 4477217 YP_870045.1 CDS Shewana3_2410 NC_008577.1 2888800 2891055 R PFAM: von Willebrand factor, type A; Vault protein inter-alpha-trypsin domain protein; SMART: Vault protein inter-alpha-trypsin, metazoa; KEGG: son:SO2195 inter-alpha-trypsin inhibitor domain protein; vault protein inter-alpha-trypsin subunit complement(2888800..2891055) Shewanella sp. ANA-3 4477218 YP_870046.1 CDS Shewana3_2411 NC_008577.1 2891101 2891895 R PFAM: OmpA/MotB domain protein; KEGG: son:SO2194 OmpA family protein; OmpA/MotB domain-containing protein complement(2891101..2891895) Shewanella sp. ANA-3 4477219 YP_870047.1 CDS Shewana3_2412 NC_008577.1 2892127 2892819 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO2193 DNA-binding response regulator; two component transcriptional regulator 2892127..2892819 Shewanella sp. ANA-3 4477220 YP_870048.1 CDS Shewana3_2413 NC_008577.1 2892852 2895011 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2192 sensor histidine kinase; ATPase domain-containing protein 2892852..2895011 Shewanella sp. ANA-3 4477221 YP_870049.1 CDS Shewana3_2414 NC_008577.1 2895136 2896335 D catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 2895136..2896335 Shewanella sp. ANA-3 4477222 YP_870050.1 CDS Shewana3_2415 NC_008577.1 2896448 2896963 R PFAM: CreA family protein; KEGG: son:SO2190 creA protein; CreA family protein complement(2896448..2896963) Shewanella sp. ANA-3 4477223 YP_870051.1 CDS Shewana3_2416 NC_008577.1 2896973 2898427 R KEGG: son:SO2189 conserved hypothetical protein; putative chaperone complement(2896973..2898427) Shewanella sp. ANA-3 4477224 YP_870052.1 CDS Shewana3_2417 NC_008577.1 2898752 2900914 D PFAM: Polyphosphate kinase; KEGG: vch:VC0723 polyphosphate kinase; polyphosphate kinase 2898752..2900914 Shewanella sp. ANA-3 4477225 YP_870053.1 CDS Shewana3_2418 NC_008577.1 2900957 2902513 D PFAM: Ppx/GppA phosphatase; KEGG: son:SO2185 exopolyphosphatase; Ppx/GppA phosphatase 2900957..2902513 Shewanella sp. ANA-3 4477226 YP_870054.1 CDS Shewana3_2419 NC_008577.1 2902599 2903468 R PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: vfi:VF0917 hypothetical protein; Ion transport protein complement(2902599..2903468) Shewanella sp. ANA-3 4477227 YP_870055.1 CDS Shewana3_2420 NC_008577.1 2903581 2904141 D KEGG: son:SO2183 hypothetical protein; hypothetical protein 2903581..2904141 Shewanella sp. ANA-3 4477228 YP_870056.1 CDS Shewana3_2421 NC_008577.1 2904223 2904831 D PFAM: protein of unknown function DUF991; KEGG: son:SO2182 hypothetical protein; hypothetical protein 2904223..2904831 Shewanella sp. ANA-3 4477229 YP_870057.1 CDS Shewana3_2422 NC_008577.1 2905067 2905327 D KEGG: son:SO2181 hypothetical protein; hypothetical protein 2905067..2905327 Shewanella sp. ANA-3 4477230 YP_870058.1 CDS Shewana3_2423 NC_008577.1 2905409 2906329 R PFAM: peptidase M23B; KEGG: son:SO2180 peptidase, M23/M37 family; peptidase M23B complement(2905409..2906329) Shewanella sp. ANA-3 4477231 YP_870059.1 CDS Shewana3_2424 NC_008577.1 2906396 2907271 R KEGG: son:SO2179 hypothetical protein; isocitrate dehydrogenase (NADP(+)) complement(2906396..2907271) Shewanella sp. ANA-3 4477232 YP_870060.1 CDS Shewana3_2425 NC_008577.1 2907852 2908853 D PFAM: Di-haem cytochrome c peroxidase; KEGG: son:SO2178 cytochrome c551 peroxidase; di-heme cytochrome c peroxidase 2907852..2908853 Shewanella sp. ANA-3 4477233 YP_870061.1 CDS Shewana3_2426 NC_008577.1 2908992 2910020 R PFAM: 37kDa nucleoid-associated protein; KEGG: son:SO2177 hypothetical protein; nucleoid-associated protein NdpA complement(2908992..2910020) Shewanella sp. ANA-3 4477234 YP_870062.2 CDS Shewana3_2427 NC_008577.1 2910098 2910316 D PFAM: protein of unknown function DUF1414; KEGG: son:SO2176 hypothetical protein; hypothetical protein 2910098..2910316 Shewanella sp. ANA-3 4477235 YP_870063.1 CDS Shewana3_2428 NC_008577.1 2910383 2912173 D PFAM: sulfatase; KEGG: son:SO2175 hypothetical protein; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase 2910383..2912173 Shewanella sp. ANA-3 4477236 YP_870064.1 CDS Shewana3_2429 NC_008577.1 2912312 2913424 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: xcb:XC_3073 xenobiotic flavin oxidoreductase A; NADH:flavin oxidoreductase complement(2912312..2913424) Shewanella sp. ANA-3 4477237 YP_870065.1 CDS Shewana3_2430 NC_008577.1 2913525 2914391 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sde:Sde_2875 transcriptional regulator, LysR family; LysR family transcriptional regulator 2913525..2914391 Shewanella sp. ANA-3 4477238 YP_870066.1 CDS Shewana3_2431 NC_008577.1 2914549 2915538 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2174 cyclic nucleotide phosphodiesterase, putative; diguanylate cyclase 2914549..2915538 Shewanella sp. ANA-3 4477239 YP_870067.1 CDS Shewana3_2432 NC_008577.1 2915562 2915813 R hypothetical protein complement(2915562..2915813) Shewanella sp. ANA-3 4477240 YP_870068.1 CDS Shewana3_2433 NC_008577.1 2916238 2916957 D hypothetical protein 2916238..2916957 Shewanella sp. ANA-3 4477241 YP_870069.1 CDS Shewana3_2434 NC_008577.1 2917779 2918522 D hypothetical protein 2917779..2918522 Shewanella sp. ANA-3 4477242 YP_870070.1 CDS Shewana3_2435 NC_008577.1 2919485 2921665 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: cps:CPS_4941 sensory box/GGDEF domain protein; diguanylate cyclase 2919485..2921665 Shewanella sp. ANA-3 4477244 YP_870071.1 CDS Shewana3_2436 NC_008577.1 2921662 2923128 R KEGG: son:SO2024 hypothetical protein; hypothetical protein complement(2921662..2923128) Shewanella sp. ANA-3 4477245 YP_870072.1 CDS Shewana3_2437 NC_008577.1 2923293 2923814 D KEGG: son:SO2022 hypothetical protein; hypothetical protein 2923293..2923814 Shewanella sp. ANA-3 4477246 YP_870073.1 CDS nadE NC_008577.1 2923981 2924871 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(2923981..2924871) Shewanella sp. ANA-3 4477247 YP_870074.1 CDS Shewana3_2439 NC_008577.1 2925022 2926326 R PFAM: PfkB domain protein; KEGG: son:SO2020 inosine-guanosine kinase; inosine-guanosine kinase complement(2925022..2926326) Shewanella sp. ANA-3 4477248 YP_870075.1 CDS hemH NC_008577.1 2926516 2927562 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(2926516..2927562) Shewanella sp. ANA-3 4477249 YP_870076.1 CDS adk NC_008577.1 2927642 2928286 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(2927642..2928286) Shewanella sp. ANA-3 4477318 YP_870077.1 CDS Shewana3_2442 NC_008577.1 2928428 2929291 R PFAM: Thioredoxin domain; KEGG: son:SO2017 putative thioredoxin-like protein; thioredoxin domain-containing protein complement(2928428..2929291) Shewanella sp. ANA-3 4477319 YP_870078.1 CDS Shewana3_2443 NC_008577.1 2929409 2931322 R molecular chaperone; heat shock protein 90 complement(2929409..2931322) Shewanella sp. ANA-3 4477320 YP_870079.1 CDS recR NC_008577.1 2931640 2932239 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(2931640..2932239) Shewanella sp. ANA-3 4477321 YP_870080.1 CDS Shewana3_2445 NC_008577.1 2932252 2932587 R PFAM: conserved hypothetical protein 103; KEGG: son:SO2014 conserved hypothetical protein TIGR00103; hypothetical protein complement(2932252..2932587) Shewanella sp. ANA-3 4477322 YP_870081.1 CDS Shewana3_2446 NC_008577.1 2932751 2935873 R KEGG: son:SO2013 DNA polymerase III, gamma and tau subunits; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau complement(2932751..2935873) Shewanella sp. ANA-3 4477323 YP_870082.1 CDS Shewana3_2447 NC_008577.1 2936003 2936554 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(2936003..2936554) Shewanella sp. ANA-3 4477324 YP_870083.1 CDS Shewana3_2448 NC_008577.1 2937026 2937394 R PFAM: protein of unknown function DUF454; KEGG: son:SO2011 hypothetical protein; hypothetical protein complement(2937026..2937394) Shewanella sp. ANA-3 4477325 YP_870084.1 CDS Shewana3_2449 NC_008577.1 2937793 2938533 R KEGG: son:SO2009 hypothetical protein; hypothetical protein complement(2937793..2938533) Shewanella sp. ANA-3 4477326 YP_870085.1 CDS Shewana3_2450 NC_008577.1 2938533 2939372 R PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: son:SO2008 hypothetical protein; hypothetical protein complement(2938533..2939372) Shewanella sp. ANA-3 4477327 YP_870086.1 CDS Shewana3_2451 NC_008577.1 2939517 2939948 R KEGG: son:SO2007 hypothetical protein; hypothetical protein complement(2939517..2939948) Shewanella sp. ANA-3 4477328 YP_870087.1 CDS Shewana3_2452 NC_008577.1 2940208 2941155 D PFAM: dihydrouridine synthase, DuS; KEGG: son:SO2006 NifR3/Smm1 family protein; dihydrouridine synthase, DuS 2940208..2941155 Shewanella sp. ANA-3 4477329 YP_870088.1 CDS Shewana3_2453 NC_008577.1 2941319 2941678 D KEGG: son:SO2005 DksA-type zinc finger protein; TraR/DksA family transcriptional regulator 2941319..2941678 Shewanella sp. ANA-3 4477330 YP_870089.1 CDS ushA NC_008577.1 2941773 2943494 R catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic complement(2941773..2943494) Shewanella sp. ANA-3 4477331 YP_870090.1 CDS Shewana3_2455 NC_008577.1 2943859 2944524 R PFAM: phospholipase/Carboxylesterase; KEGG: son:SO1999 phospholipase/carboxylesterase family protein; phospholipase/carboxylesterase complement(2943859..2944524) Shewanella sp. ANA-3 4477332 YP_870091.1 CDS Shewana3_2456 NC_008577.1 2944577 2944846 R KEGG: son:SO1998 hypothetical protein; hypothetical protein complement(2944577..2944846) Shewanella sp. ANA-3 4477333 YP_870092.1 CDS Shewana3_2457 NC_008577.1 2945191 2947119 D PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO1997 peptidase, M1 family; peptidase M1, membrane alanine aminopeptidase 2945191..2947119 Shewanella sp. ANA-3 4477334 YP_870093.1 CDS Shewana3_2458 NC_008577.1 2947381 2947869 R PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1995 peptidyl-prolyl cis-trans isomerase, FkbP family; peptidylprolyl isomerase, FKBP-type complement(2947381..2947869) Shewanella sp. ANA-3 4476639 YP_870094.1 CDS Shewana3_2459 NC_008577.1 2948078 2949370 R TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: son:SO1994 membrane-bound lytic transglycolase-related protein; lytic murein transglycosylase complement(2948078..2949370) Shewanella sp. ANA-3 4476640 YP_870095.1 CDS Shewana3_2460 NC_008577.1 2949777 2950136 D KEGG: son:SO1991 hypothetical protein; hypothetical protein 2949777..2950136 Shewanella sp. ANA-3 4476641 YP_870096.1 CDS Shewana3_2461 NC_008577.1 2950194 2950835 D KEGG: son:SO1990 hypothetical protein; hypothetical protein 2950194..2950835 Shewanella sp. ANA-3 4476642 YP_870097.1 CDS Shewana3_2462 NC_008577.1 2951015 2951959 R PFAM: response regulator receiver; CheW domain protein; KEGG: son:SO1989 chemotaxis protein CheV; response regulator receiver modulated CheW protein complement(2951015..2951959) Shewanella sp. ANA-3 4476643 YP_870098.1 CDS Shewana3_2463 NC_008577.1 2952172 2952786 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO1988 hypothetical methyltransferase; type 11 methyltransferase complement(2952172..2952786) Shewanella sp. ANA-3 4476644 YP_870099.1 CDS Shewana3_2464 NC_008577.1 2952883 2953440 D PFAM: peptidase S16, lon domain protein; KEGG: son:SO1987 ATP-dependent protease La (LON) domain protein; peptidase S16, lon domain-containing protein 2952883..2953440 Shewanella sp. ANA-3 4476645 YP_870100.1 CDS Shewana3_2465 NC_008577.1 2953556 2954224 D PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO1986 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 2953556..2954224 Shewanella sp. ANA-3 4476646 YP_870101.1 CDS Shewana3_2466 NC_008577.1 2954217 2954912 D TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: son:SO1985 transcriptional activator, putative; anti-ECFsigma factor ChrR 2954217..2954912 Shewanella sp. ANA-3 4476647 YP_870102.1 CDS Shewana3_2467 NC_008577.1 2955438 2955620 D KEGG: pha:PSHAa1300 hypothetical protein; hypothetical protein 2955438..2955620 Shewanella sp. ANA-3 4476648 YP_870103.1 CDS Shewana3_2468 NC_008577.1 2955898 2956158 D KEGG: ilo:IL0185 hypothetical protein; hypothetical protein 2955898..2956158 Shewanella sp. ANA-3 4476649 YP_870104.1 CDS Shewana3_2469 NC_008577.1 2956155 2957090 R KEGG: son:SO1978 hypothetical protein; hypothetical protein complement(2956155..2957090) Shewanella sp. ANA-3 4476650 YP_870105.1 CDS Shewana3_2470 NC_008577.1 2957393 2957800 D PFAM: protein of unknown function DUF307; KEGG: son:SO1977 hypothetical protein; hypothetical protein 2957393..2957800 Shewanella sp. ANA-3 4476651 YP_870106.1 CDS Shewana3_2471 NC_008577.1 2957863 2958732 R KEGG: son:SO1976 hydrolase, alpha/beta fold family; alpha/beta fold family hydrolase complement(2957863..2958732) Shewanella sp. ANA-3 4476652 YP_870107.1 CDS Shewana3_2472 NC_008577.1 2958732 2959757 R KEGG: son:SO1975 zinc carboxypeptidase-related protein; oxoglutarate dehydrogenase complement(2958732..2959757) Shewanella sp. ANA-3 4476653 YP_870108.1 CDS Shewana3_2473 NC_008577.1 2959864 2960595 R KEGG: son:SO1973 hypothetical ABC transporter protein; succinate dehydrogenase (ubiquinone) complement(2959864..2960595) Shewanella sp. ANA-3 4476654 YP_870109.1 CDS Shewana3_2474 NC_008577.1 2960883 2961149 D KEGG: noc:Noc_2152 integral membrane protein TerC; hypothetical protein 2960883..2961149 Shewanella sp. ANA-3 4476655 YP_870110.1 CDS Shewana3_2475 NC_008577.1 2961380 2963104 R activates fatty acids by binding to coenzyme A; AMP-binding protein complement(2961380..2963104) Shewanella sp. ANA-3 4476656 YP_870111.1 CDS Shewana3_2476 NC_008577.1 2963233 2963613 R KEGG: son:SO1970 hypothetical protein; hypothetical protein complement(2963233..2963613) Shewanella sp. ANA-3 4476657 YP_870112.1 CDS Shewana3_2477 NC_008577.1 2963901 2964362 D KEGG: son:SO1969 hypothetical protein; hypothetical protein 2963901..2964362 Shewanella sp. ANA-3 4476658 YP_870113.1 CDS Shewana3_2478 NC_008577.1 2964438 2964776 D KEGG: son:SO1968 hypothetical protein; hypothetical protein 2964438..2964776 Shewanella sp. ANA-3 4476659 YP_870114.1 CDS Shewana3_2479 NC_008577.1 2964842 2965636 R TIGRFAM: Protein of unknown function DUF124; KEGG: son:SO1966 conserved hypothetical protein TIGR00266; hypothetical protein complement(2964842..2965636) Shewanella sp. ANA-3 4476660 YP_870115.1 CDS Shewana3_2480 NC_008577.1 2965797 2966711 R KEGG: son:SO1965 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2965797..2966711) Shewanella sp. ANA-3 4476661 YP_870116.1 CDS Shewana3_2481 NC_008577.1 2966926 2968086 D PFAM: homogentisate 1,2-dioxygenase; Cupin 2, conserved barrel domain protein; KEGG: son:SO1963 homogentisate 1,2-dioxygenase; homogentisate 1,2-dioxygenase 2966926..2968086 Shewanella sp. ANA-3 4476662 YP_870117.1 CDS Shewana3_2482 NC_008577.1 2968200 2969240 D TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO1962 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2968200..2969240 Shewanella sp. ANA-3 4476663 YP_870118.1 CDS Shewana3_2483 NC_008577.1 2969437 2970840 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dvu:DVU3106 GGDEF domain protein; diguanylate cyclase complement(2969437..2970840) Shewanella sp. ANA-3 4476664 YP_870119.1 CDS Shewana3_2484 NC_008577.1 2971024 2971581 R PFAM: transferase hexapeptide repeat containing protein; KEGG: son:SO1961 maltose O-acetyltransferase; hexapaptide repeat-containing transferase complement(2971024..2971581) Shewanella sp. ANA-3 4476665 YP_870120.1 CDS Shewana3_2485 NC_008577.1 2971905 2972528 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO1954 transporter, LysE family; lysine exporter protein LysE/YggA 2971905..2972528 Shewanella sp. ANA-3 4476666 YP_870121.1 CDS Shewana3_2486 NC_008577.1 2972641 2973906 R PFAM: protein of unknown function DUF482; KEGG: son:SO1953 hypothetical protein; hypothetical protein complement(2972641..2973906) Shewanella sp. ANA-3 4476667 YP_870122.1 CDS Shewana3_2487 NC_008577.1 2974016 2975755 D TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: son:SO1952 gamma-glutamyltranspeptidase; gamma-glutamyltransferase 1 2974016..2975755 Shewanella sp. ANA-3 4476668 YP_870123.1 CDS Shewana3_2488 NC_008577.1 2976766 2977404 R KEGG: dps:DP1565 hypothetical protein; hypothetical protein complement(2976766..2977404) Shewanella sp. ANA-3 4476669 YP_870124.1 CDS Shewana3_2489 NC_008577.1 2977867 2979672 R KEGG: stm:STM1554 putative coiled-coil protein; hypothetical protein complement(2977867..2979672) Shewanella sp. ANA-3 4476670 YP_870125.1 CDS Shewana3_2490 NC_008577.1 2979789 2980094 R KEGG: lil:LA2762 hypothetical protein; hypothetical protein complement(2979789..2980094) Shewanella sp. ANA-3 4476671 YP_870126.1 CDS Shewana3_2491 NC_008577.1 2980677 2982278 R TIGRFAM: dipeptidase, putative; PFAM: peptidase M20; KEGG: cps:CPS_1363 putative dipeptidase; hypothetical protein complement(2980677..2982278) Shewanella sp. ANA-3 4476672 YP_870127.1 CDS Shewana3_2492 NC_008577.1 2982552 2984780 D PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: bth:BT2834 peptidyl-dipeptidase; peptidyl-dipeptidase Dcp 2982552..2984780 Shewanella sp. ANA-3 4476673 YP_870128.1 CDS Shewana3_2493 NC_008577.1 2984878 2985375 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO2707 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(2984878..2985375) Shewanella sp. ANA-3 4477544 YP_870129.1 CDS Shewana3_2494 NC_008577.1 2985410 2985958 R PFAM: nitroreductase; KEGG: son:SO2708 nitroreductase family protein; nitroreductase complement(2985410..2985958) Shewanella sp. ANA-3 4477545 YP_870130.1 CDS Shewana3_2495 NC_008577.1 2986087 2986680 R PFAM: DoxX family protein; KEGG: son:SO2710 hypothetical protein; DoxX family protein complement(2986087..2986680) Shewanella sp. ANA-3 4477546 YP_870131.1 CDS Shewana3_2496 NC_008577.1 2986731 2987603 R KEGG: son:SO2711 hypothetical protein; hypothetical protein complement(2986731..2987603) Shewanella sp. ANA-3 4477547 YP_870132.1 CDS Shewana3_2497 NC_008577.1 2987714 2989018 R PFAM: aminoglycoside phosphotransferase; KEGG: son:SO2712 hypothetical protein; aminoglycoside phosphotransferase complement(2987714..2989018) Shewanella sp. ANA-3 4477548 YP_870133.1 CDS Shewana3_2498 NC_008577.1 2989109 2989774 R TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: son:SO2713 transporter, putative; nicotinamide mononucleotide transporter PnuC complement(2989109..2989774) Shewanella sp. ANA-3 4477549 YP_870134.1 CDS Shewana3_2499 NC_008577.1 2989843 2990103 R KEGG: son:SO2714 hypothetical protein; hypothetical protein complement(2989843..2990103) Shewanella sp. ANA-3 4477550 YP_870135.1 CDS Shewana3_2500 NC_008577.1 2990199 2992472 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO2715 TonB-dependent receptor; TonB-dependent receptor complement(2990199..2992472) Shewanella sp. ANA-3 4477551 YP_870136.1 CDS Shewana3_2501 NC_008577.1 2992851 2993531 D PFAM: cyclic nucleotide-binding; KEGG: son:SO2717 cyclic nucleotide binding protein, putative; cyclic nucleotide-binding protein 2992851..2993531 Shewanella sp. ANA-3 4477552 YP_870137.1 CDS Shewana3_2502 NC_008577.1 2993587 2994771 R PFAM: major facilitator superfamily MFS_1; KEGG: son:SO2718 hypothetical protein; hypothetical protein complement(2993587..2994771) Shewanella sp. ANA-3 4477553 YP_870138.1 CDS Shewana3_2503 NC_008577.1 2994813 2995517 R catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase complement(2994813..2995517) Shewanella sp. ANA-3 4477554 YP_870139.1 CDS Shewana3_2504 NC_008577.1 2995880 2996272 R PFAM: protein of unknown function DUF1425; KEGG: son:SO2720 hypothetical protein; hypothetical protein complement(2995880..2996272) Shewanella sp. ANA-3 4477555 YP_870140.1 CDS Shewana3_2505 NC_008577.1 2996403 2996867 R PFAM: thioesterase superfamily protein; KEGG: son:SO2721 hypothetical protein; thioesterase superfamily protein complement(2996403..2996867) Shewanella sp. ANA-3 4477556 YP_870141.1 CDS Shewana3_2506 NC_008577.1 2996854 2997381 R TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: son:SO2722 hypothetical protein; hypothetical protein complement(2996854..2997381) Shewanella sp. ANA-3 4477557 YP_870142.1 CDS Shewana3_2507 NC_008577.1 2997378 2997734 R PFAM: histidine triad (HIT) protein; KEGG: son:SO2723 HIT family protein; histidine triad (HIT) protein complement(2997378..2997734) Shewanella sp. ANA-3 4477558 YP_870143.1 CDS Shewana3_2508 NC_008577.1 2997880 2999646 D PFAM: peptidase M61 domain protein; KEGG: son:SO2724 protease, putative; peptidase M61 domain-containing protein 2997880..2999646 Shewanella sp. ANA-3 4477559 YP_870144.1 CDS Shewana3_2509 NC_008577.1 2999802 3000437 R PFAM: regulatory protein, LuxR; KEGG: son:SO2725 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(2999802..3000437) Shewanella sp. ANA-3 4477560 YP_870145.1 CDS Shewana3_2510 NC_008577.1 3000734 3001480 D PFAM: cytochrome B561; KEGG: son:SO2726 cytochrome b, putative; cytochrome B561 3000734..3001480 Shewanella sp. ANA-3 4477561 YP_870146.1 CDS Shewana3_2511 NC_008577.1 3001550 3001900 R KEGG: son:SO2727 cytochrome c3; cytochrome c3 complement(3001550..3001900) Shewanella sp. ANA-3 4477562 YP_870147.1 CDS Shewana3_2512 NC_008577.1 3002225 3003088 R putative metalloprotease; heat shock protein HtpX complement(3002225..3003088) Shewanella sp. ANA-3 4477563 YP_870148.1 CDS Shewana3_2513 NC_008577.1 3003376 3004086 D alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 3003376..3004086 Shewanella sp. ANA-3 4477564 YP_870149.1 CDS mdoG NC_008577.1 3004504 3006084 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 3004504..3006084 Shewanella sp. ANA-3 4477565 YP_870150.1 CDS Shewana3_2515 NC_008577.1 3006785 3007753 D KEGG: son:SO2736 hypothetical protein; hypothetical protein 3006785..3007753 Shewanella sp. ANA-3 4477566 YP_870151.1 CDS bioD NC_008577.1 3007834 3008529 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase complement(3007834..3008529) Shewanella sp. ANA-3 4477567 YP_870152.1 CDS Shewana3_2517 NC_008577.1 3008585 3009412 R TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO2738 biotin synthesis protein BioC; biotin biosynthesis protein BioC complement(3008585..3009412) Shewanella sp. ANA-3 4477568 YP_870153.1 CDS Shewana3_2518 NC_008577.1 3009588 3010808 R PFAM: aminotransferase, class I and II; aminotransferase class-III; KEGG: son:SO2739 8-amino-7-oxononanoate synthase; class I and II aminotransferase complement(3009588..3010808) Shewanella sp. ANA-3 4477569 YP_870154.1 CDS Shewana3_2519 NC_008577.1 3011043 3012095 R KEGG: son:SO2740 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase complement(3011043..3012095) Shewanella sp. ANA-3 4477570 YP_870155.1 CDS Shewana3_2520 NC_008577.1 3012218 3013576 D TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: son:SO2741 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; aminotransferase 3012218..3013576 Shewanella sp. ANA-3 4477571 YP_870156.1 CDS Shewana3_2521 NC_008577.1 3014080 3015681 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: vch:VC1248 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3014080..3015681 Shewanella sp. ANA-3 4477572 YP_870157.1 CDS Shewana3_2522 NC_008577.1 3015742 3019182 R TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO2742 sensor histidine kinase/response regulator; multi-sensor hybrid histidine kinase complement(3015742..3019182) Shewanella sp. ANA-3 4477573 YP_870158.1 CDS Shewana3_2523 NC_008577.1 3019358 3021310 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 3019358..3021310 Shewanella sp. ANA-3 4477574 YP_870159.1 CDS Shewana3_2524 NC_008577.1 3021537 3023309 D PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO2744 helicase; type III restriction enzyme, res subunit 3021537..3023309 Shewanella sp. ANA-3 4477575 YP_870160.1 CDS grxA NC_008577.1 3023370 3023630 D functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 3023370..3023630 Shewanella sp. ANA-3 4477576 YP_870161.1 CDS Shewana3_2526 NC_008577.1 3023689 3024852 R KEGG: pha:PSHAa0696 hypothetical protein; hypothetical protein complement(3023689..3024852) Shewanella sp. ANA-3 4477577 YP_870162.1 CDS Shewana3_2529 NC_008577.1 3026174 3026926 R KEGG: son:SO2746 hypothetical protein; hypothetical protein complement(3026174..3026926) Shewanella sp. ANA-3 4477585 YP_870163.1 CDS Shewana3_2530 NC_008577.1 3026951 3027487 R PFAM: OmpA/MotB domain protein; KEGG: son:SO2747 peptidoglycan-associated lipoprotein; OmpA/MotB domain-containing protein complement(3026951..3027487) Shewanella sp. ANA-3 4477586 YP_870164.1 CDS tolB NC_008577.1 3027534 3028862 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(3027534..3028862) Shewanella sp. ANA-3 4477587 YP_870165.1 CDS Shewana3_2532 NC_008577.1 3028872 3029894 R PFAM: TolA family protein; KEGG: son:SO2749 tolA protein; TolA family protein complement(3028872..3029894) Shewanella sp. ANA-3 4477588 YP_870166.1 CDS Shewana3_2533 NC_008577.1 3029895 3030329 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO2750 tolr protein; biopolymer transport protein ExbD/TolR complement(3029895..3030329) Shewanella sp. ANA-3 4477589 YP_870167.1 CDS Shewana3_2534 NC_008577.1 3030329 3031015 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO2751 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel complement(3030329..3031015) Shewanella sp. ANA-3 4477590 YP_870168.1 CDS Shewana3_2535 NC_008577.1 3031005 3031406 R TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: son:SO2752 conserved hypothetical protein TIGR00051; 4-hydroxybenzoyl-CoA thioesterase complement(3031005..3031406) Shewanella sp. ANA-3 4477591 YP_870169.1 CDS Shewana3_2536 NC_008577.1 3031577 3033757 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: son:SO2753 prolyl endopeptidase; prolyl oligopeptidase complement(3031577..3033757) Shewanella sp. ANA-3 4477592 YP_870170.1 CDS Shewana3_2537 NC_008577.1 3034462 3035361 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bur:Bcep18194_B2548 FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(3034462..3035361) Shewanella sp. ANA-3 4477593 YP_870171.1 CDS Shewana3_2538 NC_008577.1 3035478 3035891 D PFAM: protein of unknown function UPF0074; Helix-turn-helix, type 11 domain protein; KEGG: hch:HCH_02265 predicted transcriptional regulator; BadM/Rrf2 family transcriptional regulator 3035478..3035891 Shewanella sp. ANA-3 4477594 YP_870172.1 CDS Shewana3_2539 NC_008577.1 3036008 3036880 R PFAM: OmpA/MotB domain protein; KEGG: cps:CPS_3471 sodium-type flagellar protein MotY; OmpA/MotB domain-containing protein complement(3036008..3036880) Shewanella sp. ANA-3 4477595 YP_870173.1 CDS Shewana3_2540 NC_008577.1 3037023 3037691 D Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 3037023..3037691 Shewanella sp. ANA-3 4477596 YP_870174.1 CDS Shewana3_2541 NC_008577.1 3037766 3038371 R PFAM: alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen; Redoxin domain protein; KEGG: cps:CPS_3474 antioxidant, AhpC/Tsa family; alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen complement(3037766..3038371) Shewanella sp. ANA-3 4479203 YP_870175.1 CDS Shewana3_2542 NC_008577.1 3038742 3040061 D PFAM: Gluconate transporter; Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: son:SO2757 membrane protein, putative; Na+/H+ antiporter NhaC 3038742..3040061 Shewanella sp. ANA-3 4479204 YP_870176.1 CDS Shewana3_2543 NC_008577.1 3040145 3041566 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO2758 GGDEF family protein; diguanylate cyclase complement(3040145..3041566) Shewanella sp. ANA-3 4479205 YP_870177.1 CDS upp NC_008577.1 3041754 3042380 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(3041754..3042380) Shewanella sp. ANA-3 4479206 YP_870178.1 CDS Shewana3_2545 NC_008577.1 3042708 3043745 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 3042708..3043745 Shewanella sp. ANA-3 4479207 YP_870179.1 CDS purN NC_008577.1 3043745 3044389 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 3043745..3044389 Shewanella sp. ANA-3 4479208 YP_870180.1 CDS Shewana3_2547 NC_008577.1 3044528 3045274 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO2762 nagD protein; UMP phosphatase 3044528..3045274 Shewanella sp. ANA-3 4479209 YP_870181.1 CDS Shewana3_2548 NC_008577.1 3045472 3047145 D PFAM: peptidase M20; peptidase M28; KEGG: son:SO2766 hypothetical protein; peptidase M28 3045472..3047145 Shewanella sp. ANA-3 4479210 YP_870182.1 CDS asnB NC_008577.1 3047610 3049274 D functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 3047610..3049274 Shewanella sp. ANA-3 4479211 YP_870183.1 CDS Shewana3_2550 NC_008577.1 3049424 3050431 R PFAM: Patatin; KEGG: pha:PSHAb0541 putative hydrolase similar to YjjU; patatin complement(3049424..3050431) Shewanella sp. ANA-3 4479212 YP_870184.1 CDS Shewana3_2551 NC_008577.1 3050707 3052923 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAb0279 putative outer membrane receptor; TonB-dependent siderophore receptor complement(3050707..3052923) Shewanella sp. ANA-3 4479213 YP_870185.1 CDS Shewana3_2552 NC_008577.1 3053218 3055008 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO2768 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein complement(3053218..3055008) Shewanella sp. ANA-3 4479214 YP_870186.1 CDS Shewana3_2553 NC_008577.1 3055236 3056084 D PFAM: Aldose 1-epimerase; KEGG: son:SO2769 hypothetical protein; aldose 1-epimerase 3055236..3056084 Shewanella sp. ANA-3 4479215 YP_870187.1 CDS Shewana3_2554 NC_008577.1 3056179 3057054 R PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: son:SO2771 2-hydroxy-3-oxopropionate reductase; 6-phosphogluconate dehydrogenase complement(3056179..3057054) Shewanella sp. ANA-3 4479216 YP_870188.1 CDS Shewana3_2555 NC_008577.1 3057397 3057876 R PFAM: thioesterase superfamily protein; KEGG: son:SO2772 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein complement(3057397..3057876) Shewanella sp. ANA-3 4479217 YP_870189.1 CDS Shewana3_2556 NC_008577.1 3057993 3058361 R KEGG: son:SO2773 hypothetical protein; hypothetical protein complement(3057993..3058361) Shewanella sp. ANA-3 4479218 YP_870190.1 CDS Shewana3_2557 NC_008577.1 3058542 3059780 R PFAM: beta-ketoacyl synthase; KEGG: son:SO2774 3-oxoacyl-(acyl-carrier-protein) synthase II; 3-oxoacyl-ACP synthase complement(3058542..3059780) Shewanella sp. ANA-3 4479219 YP_870191.1 CDS Shewana3_2558 NC_008577.1 3060384 3061130 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO2776 3-oxoacyl-[acyl-carrier protein] reductase; 3-oxoacyl-ACP reductase complement(3060384..3061130) Shewanella sp. ANA-3 4479220 YP_870192.1 CDS Shewana3_2559 NC_008577.1 3061140 3062066 R TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: son:SO2777 malonyl CoA-acyl carrier protein transacylase; ACP S-malonyltransferase complement(3061140..3062066) Shewanella sp. ANA-3 4479221 YP_870193.1 CDS Shewana3_2560 NC_008577.1 3062171 3063130 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(3062171..3063130) Shewanella sp. ANA-3 4479222 YP_870194.1 CDS Shewana3_2561 NC_008577.1 3063140 3064168 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX complement(3063140..3064168) Shewanella sp. ANA-3 4479223 YP_870195.1 CDS rpmF NC_008577.1 3064184 3064354 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(3064184..3064354) Shewanella sp. ANA-3 4479224 YP_870196.1 CDS Shewana3_2563 NC_008577.1 3064372 3064896 R PFAM: protein of unknown function DUF177; KEGG: son:SO2781 hypothetical protein; hypothetical protein complement(3064372..3064896) Shewanella sp. ANA-3 4479225 YP_870197.1 CDS Shewana3_2564 NC_008577.1 3065183 3065770 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: son:SO2782 maf protein, putative; maf protein 3065183..3065770 Shewanella sp. ANA-3 4479226 YP_870198.1 CDS Shewana3_2565 NC_008577.1 3065931 3066665 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ilo:IL1347 predicted phosphatase related to gph; HAD family hydrolase complement(3065931..3066665) Shewanella sp. ANA-3 4479227 YP_870199.1 CDS Shewana3_2566 NC_008577.1 3066717 3067706 R TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: plu:plu2840 ribosomal large subunit pseudouridine synthase C (pseudouridylate synthase) (uracil hydrolyase); ribosomal large subunit pseudouridine synthase C complement(3066717..3067706) Shewanella sp. ANA-3 4479228 YP_870200.1 CDS Shewana3_2567 NC_008577.1 3068272 3071568 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: son:SO2785 ribonuclease E; RNAse E 3068272..3071568 Shewanella sp. ANA-3 4479229 YP_870201.1 CDS Shewana3_2568 NC_008577.1 3071714 3073273 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: vvy:VV1265 sulfate permease family protein; sulfate transporter 3071714..3073273 Shewanella sp. ANA-3 4479230 YP_870202.1 CDS Shewana3_2569 NC_008577.1 3073707 3073916 R PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: son:SO2787 cold shock domain family protein; cold-shock DNA-binding protein family protein complement(3073707..3073916) Shewanella sp. ANA-3 4479231 YP_870203.1 CDS rrmA NC_008577.1 3074223 3075038 R methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A complement(3074223..3075038) Shewanella sp. ANA-3 4479232 YP_870204.1 CDS Shewana3_2571 NC_008577.1 3075072 3075878 R KEGG: son:SO2789 hypothetical protein; hypothetical protein complement(3075072..3075878) Shewanella sp. ANA-3 4479233 YP_870205.1 CDS sbcB NC_008577.1 3076054 3077466 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 3076054..3077466 Shewanella sp. ANA-3 4479234 YP_870206.1 CDS Shewana3_2573 NC_008577.1 3077679 3078569 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 3077679..3078569 Shewanella sp. ANA-3 4479235 YP_870207.1 CDS Shewana3_2574 NC_008577.1 3078653 3078868 R PFAM: protein of unknown function DUF1289; KEGG: son:SO2792 hypothetical protein; hypothetical protein complement(3078653..3078868) Shewanella sp. ANA-3 4479236 YP_870208.1 CDS Shewana3_2575 NC_008577.1 3078849 3079196 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO2793 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(3078849..3079196) Shewanella sp. ANA-3 4479237 YP_870209.1 CDS Shewana3_2576 NC_008577.1 3079270 3079974 R KEGG: son:SO2794 hypothetical protein; hypothetical protein complement(3079270..3079974) Shewanella sp. ANA-3 4479238 YP_870210.1 CDS Shewana3_2577 NC_008577.1 3080325 3080705 D KEGG: son:SO2795 glyoxalase family protein; glyoxalase family protein 3080325..3080705 Shewanella sp. ANA-3 4479239 YP_870211.1 CDS Shewana3_2578 NC_008577.1 3080936 3084166 D PFAM: protein of unknown function DUF748; KEGG: son:SO2796 hypothetical protein; hypothetical protein 3080936..3084166 Shewanella sp. ANA-3 4479240 YP_870212.1 CDS Shewana3_2579 NC_008577.1 3084400 3084756 D PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain protein; KEGG: son:SO2797 hypothetical protein; glutaredoxin 3084400..3084756 Shewanella sp. ANA-3 4479241 YP_870213.1 CDS Shewana3_2580 NC_008577.1 3084815 3085504 R KEGG: son:SO2798 hypothetical protein; hypothetical protein complement(3084815..3085504) Shewanella sp. ANA-3 4479242 YP_870214.1 CDS Shewana3_2581 NC_008577.1 3085670 3086134 D KEGG: son:SO2799 lipoprotein, putative; putative lipoprotein 3085670..3086134 Shewanella sp. ANA-3 4479243 YP_870215.1 CDS Shewana3_2582 NC_008577.1 3086265 3086444 R PFAM: protein of unknown function DUF343; KEGG: son:SO2800 hypothetical protein; hypothetical protein complement(3086265..3086444) Shewanella sp. ANA-3 4479244 YP_870216.1 CDS lpxK NC_008577.1 3086434 3087441 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(3086434..3087441) Shewanella sp. ANA-3 4479245 YP_870217.1 CDS Shewana3_2584 NC_008577.1 3087442 3089244 R KEGG: son:SO2802 ABC transporter, ATP-binding protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA complement(3087442..3089244) Shewanella sp. ANA-3 4479246 YP_870218.1 CDS Shewana3_2585 NC_008577.1 3089277 3091598 R TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: son:SO2803 DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 complement(3089277..3091598) Shewanella sp. ANA-3 4479247 YP_870219.1 CDS Shewana3_2586 NC_008577.1 3091631 3092140 D KEGG: son:SO2804 hypothetical protein; hypothetical protein 3091631..3092140 Shewanella sp. ANA-3 4479248 YP_870220.1 CDS Shewana3_2587 NC_008577.1 3092547 3093719 D PFAM: NnrS family protein; KEGG: son:SO2805 putative uncharacterized protein involved in response to NO; NnrS family protein 3092547..3093719 Shewanella sp. ANA-3 4479249 YP_870221.1 CDS Shewana3_2588 NC_008577.1 3093869 3094273 D PFAM: phosphate-starvation-inducible E; KEGG: son:SO2806 hypothetical protein; phosphate-starvation-inducible E 3093869..3094273 Shewanella sp. ANA-3 4479250 YP_870222.1 CDS Shewana3_2589 NC_008577.1 3094425 3094727 D PFAM: type IV pilus assembly PilZ; KEGG: son:SO2807 hypothetical protein; type IV pilus assembly PilZ 3094425..3094727 Shewanella sp. ANA-3 4479251 YP_870223.1 CDS Shewana3_2590 NC_008577.1 3094805 3095473 D KEGG: son:SO2808 hypothetical protein; hypothetical protein 3094805..3095473 Shewanella sp. ANA-3 4479252 YP_870224.1 CDS Shewana3_2591 NC_008577.1 3095460 3095801 D KEGG: son:SO2809 RepA domain protein; RepA domain-containing protein 3095460..3095801 Shewanella sp. ANA-3 4479253 YP_870225.1 CDS Shewana3_2592 NC_008577.1 3096176 3096334 R KEGG: son:SO2821 hypothetical protein; hypothetical protein complement(3096176..3096334) Shewanella sp. ANA-3 4479254 YP_870226.1 CDS Shewana3_2593 NC_008577.1 3096472 3098154 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type, transmembrane region; KEGG: son:SO2822 sensor histidine kinase; signal transduction histidine kinase LytS 3096472..3098154 Shewanella sp. ANA-3 4479471 YP_870227.1 CDS Shewana3_2594 NC_008577.1 3098151 3098861 D unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT 3098151..3098861 Shewanella sp. ANA-3 4479472 YP_870228.1 CDS Shewana3_2595 NC_008577.1 3099057 3100511 D PFAM: carbon starvation protein CstA; KEGG: son:SO2823.1 hypothetical carbon starvation protein A; carbon starvation protein CstA 3099057..3100511 Shewanella sp. ANA-3 4479473 YP_870229.1 CDS Shewana3_2596 NC_008577.1 3100650 3101018 D KEGG: son:SO2827 hypothetical protein; hypothetical protein 3100650..3101018 Shewanella sp. ANA-3 4478464 YP_870230.1 CDS Shewana3_2597 NC_008577.1 3101150 3102292 R KEGG: pha:PSHAa2586 L-sorbosone dehydrogenase (SNDH); L-sorbosone dehydrogenase (SNDH) complement(3101150..3102292) Shewanella sp. ANA-3 4478465 YP_870231.1 CDS Shewana3_2598 NC_008577.1 3102604 3103050 D KEGG: son:SO2829 hypothetical protein; hypothetical protein 3102604..3103050 Shewanella sp. ANA-3 4478466 YP_870232.1 CDS Shewana3_2599 NC_008577.1 3103115 3103984 R KEGG: son:SO2830 hypothetical protein; hypothetical protein complement(3103115..3103984) Shewanella sp. ANA-3 4478467 YP_870233.1 CDS ribA NC_008577.1 3104099 3104710 R catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II complement(3104099..3104710) Shewanella sp. ANA-3 4478468 YP_870234.1 CDS Shewana3_2601 NC_008577.1 3104974 3105330 R KEGG: son:SO2832 hypothetical protein; hypothetical protein complement(3104974..3105330) Shewanella sp. ANA-3 4478469 YP_870235.1 CDS nrdG NC_008577.1 3105456 3105917 R activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein complement(3105456..3105917) Shewanella sp. ANA-3 4478470 YP_870236.1 CDS Shewana3_2603 NC_008577.1 3106023 3108140 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(3106023..3108140) Shewanella sp. ANA-3 4478471 YP_870237.1 CDS Shewana3_2604 NC_008577.1 3108510 3109205 R KEGG: son:SO2835 hypothetical protein; hypothetical protein complement(3108510..3109205) Shewanella sp. ANA-3 4478472 YP_870238.1 CDS Shewana3_2605 NC_008577.1 3109370 3110317 R PFAM: Patatin; KEGG: son:SO2836 hypothetical protein; patatin complement(3109370..3110317) Shewanella sp. ANA-3 4478473 YP_870239.1 CDS Shewana3_2606 NC_008577.1 3110619 3111968 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO2838 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 3110619..3111968 Shewanella sp. ANA-3 4478474 YP_870240.1 CDS Shewana3_2607 NC_008577.1 3112067 3112504 D KEGG: son:SO2839 hypothetical protein; hypothetical protein 3112067..3112504 Shewanella sp. ANA-3 4478475 YP_870241.1 CDS Shewana3_2608 NC_008577.1 3112562 3113071 D PFAM: protein of unknown function DUF45; KEGG: son:SO2840 hypothetical protein; hypothetical protein 3112562..3113071 Shewanella sp. ANA-3 4478476 YP_870242.1 CDS Shewana3_2609 NC_008577.1 3113197 3113655 D KEGG: son:SO2841 hypothetical protein; hypothetical protein 3113197..3113655 Shewanella sp. ANA-3 4478477 YP_870243.1 CDS Shewana3_2610 NC_008577.1 3114007 3115302 R PFAM: peptidase M23B; Opacity-associated protein A; KEGG: son:SO2842 peptidase, M23/M37 family; peptidase M23B complement(3114007..3115302) Shewanella sp. ANA-3 4478478 YP_870244.1 CDS Shewana3_2611 NC_008577.1 3115569 3118625 R KEGG: son:SO2843 exonuclease SbcC, putative; exonuclease SbcC complement(3115569..3118625) Shewanella sp. ANA-3 4478479 YP_870245.1 CDS Shewana3_2612 NC_008577.1 3118622 3119824 R TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: son:SO2844 exonuclease SbcD, putative; exodeoxyribonuclease I subunit D complement(3118622..3119824) Shewanella sp. ANA-3 4478480 YP_870246.1 CDS Shewana3_2613 NC_008577.1 3120105 3120914 R PFAM: protein of unknown function DUF81; KEGG: son:SO2846 hypothetical protein; hypothetical protein complement(3120105..3120914) Shewanella sp. ANA-3 4478481 YP_870247.1 CDS Shewana3_2614 NC_008577.1 3120963 3121925 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO2847 transcriptional regulator, LysR family; LysR family transcriptional regulator 3120963..3121925 Shewanella sp. ANA-3 4478482 YP_870248.1 CDS Shewana3_2615 NC_008577.1 3121980 3122366 R PFAM: protein of unknown function DUF1260; KEGG: son:SO1836 hypothetical protein; hypothetical protein complement(3121980..3122366) Shewanella sp. ANA-3 4478483 YP_870249.1 CDS Shewana3_2616 NC_008577.1 3122389 3122619 R PFAM: RNA-binding S4 domain protein; KEGG: son:SO1835 hypothetical protein; RNA-binding S4 domain-containing protein complement(3122389..3122619) Shewanella sp. ANA-3 4478484 YP_870250.1 CDS Shewana3_2617 NC_008577.1 3122690 3123226 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1834 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(3122690..3123226) Shewanella sp. ANA-3 4478485 YP_870251.1 CDS Shewana3_2618 NC_008577.1 3123300 3123578 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO1832 peptidyl-prolyl cis-trans isomerase C; PpiC-type peptidyl-prolyl cis-trans isomerase complement(3123300..3123578) Shewanella sp. ANA-3 4478486 YP_870252.1 CDS Shewana3_2619 NC_008577.1 3123759 3125594 R PFAM: protein of unknown function DUF885; KEGG: son:SO1831 hypothetical protein; hypothetical protein complement(3123759..3125594) Shewanella sp. ANA-3 4478487 YP_870253.1 CDS Shewana3_2620 NC_008577.1 3125675 3126184 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1830 GGDEF domain protein; diguanylate cyclase 3125675..3126184 Shewanella sp. ANA-3 4478488 YP_870254.1 CDS Shewana3_2621 NC_008577.1 3126236 3127483 R PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO1829 TPR domain protein; hypothetical protein complement(3126236..3127483) Shewanella sp. ANA-3 4478489 YP_870255.1 CDS Shewana3_2622 NC_008577.1 3127486 3128109 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: son:SO1828 TonB2 protein; TonB family protein complement(3127486..3128109) Shewanella sp. ANA-3 4478490 YP_870256.1 CDS Shewana3_2623 NC_008577.1 3128111 3128515 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO1827 TonB system transport protein ExbD2; biopolymer transport protein ExbD/TolR complement(3128111..3128515) Shewanella sp. ANA-3 4478491 YP_870257.1 CDS Shewana3_2624 NC_008577.1 3128529 3129056 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO1826 TonB system transport protein ExbB2; MotA/TolQ/ExbB proton channel complement(3128529..3129056) Shewanella sp. ANA-3 4478492 YP_870258.1 CDS Shewana3_2625 NC_008577.1 3129056 3130411 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO1825 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel complement(3129056..3130411) Shewanella sp. ANA-3 4478493 YP_870259.1 CDS Shewana3_2626 NC_008577.1 3130411 3131193 R KEGG: son:SO1824 hypothetical protein; hypothetical protein complement(3130411..3131193) Shewanella sp. ANA-3 4478494 YP_870260.1 CDS Shewana3_2627 NC_008577.1 3131779 3134592 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1822 TonB-dependent receptor, putative; TonB-dependent receptor complement(3131779..3134592) Shewanella sp. ANA-3 4478495 YP_870261.1 CDS Shewana3_2628 NC_008577.1 3134873 3136081 R PFAM: porin, Gram-negative type; KEGG: son:SO1821 outer membrane porin, putative; porin complement(3134873..3136081) Shewanella sp. ANA-3 4478496 YP_870262.1 CDS Shewana3_2629 NC_008577.1 3136302 3138734 R Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II complement(3136302..3138734) Shewanella sp. ANA-3 4478497 YP_870263.1 CDS dinG NC_008577.1 3138875 3140947 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 3138875..3140947 Shewanella sp. ANA-3 4478498 YP_870264.1 CDS Shewana3_2631 NC_008577.1 3140957 3141730 D PFAM: protein of unknown function DUF81; KEGG: son:SO1818 hypothetical protein; hypothetical protein 3140957..3141730 Shewanella sp. ANA-3 4478394 YP_870265.1 CDS Shewana3_2632 NC_008577.1 3141721 3142389 D KEGG: son:SO1817 primosomal replication protein N'', putative; primosomal replication protein N'' 3141721..3142389 Shewanella sp. ANA-3 4478395 YP_870266.1 CDS Shewana3_2633 NC_008577.1 3142399 3143091 D KEGG: son:SO1816 hypothetical protein; hypothetical protein 3142399..3143091 Shewanella sp. ANA-3 4478396 YP_870267.1 CDS Shewana3_2634 NC_008577.1 3143097 3143999 D PFAM: histone deacetylase superfamily; KEGG: son:SO1815 histone deacetylase/AcuC/AphA family protein; histone deacetylase superfamily protein 3143097..3143999 Shewanella sp. ANA-3 4478397 YP_870268.1 CDS Shewana3_2635 NC_008577.1 3144033 3144320 D KEGG: son:SO1814 hypothetical protein; hypothetical protein 3144033..3144320 Shewanella sp. ANA-3 4478398 YP_870269.1 CDS Shewana3_2636 NC_008577.1 3145167 3146663 R hypothetical protein complement(3145167..3146663) Shewanella sp. ANA-3 4478399 YP_870270.1 CDS Shewana3_2637 NC_008577.1 3147377 3147925 R PFAM: Resolvase, N-terminal domain protein; Resolvase helix-turn-helix domain protein; KEGG: hit:NTHI0158 resolvase/integrase-like protein; resolvase domain-containing protein complement(3147377..3147925) Shewanella sp. ANA-3 4478400 YP_870271.1 CDS Shewana3_2638 NC_008577.1 3148198 3149577 R PFAM: KAP P-loop domain protein; KEGG: vpa:VP2900 hypothetical protein; KAP P-loop domain-containing protein complement(3148198..3149577) Shewanella sp. ANA-3 4478401 YP_870272.1 CDS Shewana3_2639 NC_008577.1 3149659 3151272 D KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 3149659..3151272 Shewanella sp. ANA-3 4478402 YP_870273.1 CDS Shewana3_2640 NC_008577.1 3151732 3154080 D KEGG: vpa:VP2905 hypothetical protein; hypothetical protein 3151732..3154080 Shewanella sp. ANA-3 4478403 YP_870274.1 CDS Shewana3_2641 NC_008577.1 3154100 3155380 R PFAM: phage integrase family protein; KEGG: vpa:VP0643 hypothetical protein; phage integrase family protein complement(3154100..3155380) Shewanella sp. ANA-3 4478404 YP_870275.1 CDS Shewana3_2642 NC_008577.1 3155765 3156130 R KEGG: son:SO1813 DNA-binding protein, putative; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1; helix-hairpin-helix repeat-containing competence protein ComEA complement(3155765..3156130) Shewanella sp. ANA-3 4478406 YP_870276.1 CDS Shewana3_2643 NC_008577.1 3156336 3157529 R TIGRFAM: methionine gamma-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: son:SO1812 methionine gamma-lyase; methionine gamma-lyase complement(3156336..3157529) Shewanella sp. ANA-3 4478407 YP_870277.1 CDS Shewana3_2644 NC_008577.1 3157848 3159050 R PFAM: conserved hypothetical protein 1620; KEGG: son:SO1811 hypothetical protein; hypothetical protein complement(3157848..3159050) Shewanella sp. ANA-3 4478408 YP_870278.1 CDS Shewana3_2645 NC_008577.1 3159047 3160507 R PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: son:SO1810 hypothetical ATPase; hypothetical protein complement(3159047..3160507) Shewanella sp. ANA-3 4478409 YP_870279.1 CDS Shewana3_2646 NC_008577.1 3160602 3160988 R PFAM: PspC domain protein; KEGG: son:SO1809 phage shock protein C; phage shock protein C, PspC complement(3160602..3160988) Shewanella sp. ANA-3 4478410 YP_870280.1 CDS pspB NC_008577.1 3160975 3161208 R acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B complement(3160975..3161208) Shewanella sp. ANA-3 4478411 YP_870281.1 CDS Shewana3_2648 NC_008577.1 3161232 3161915 R PFAM: PspA/IM30 family protein; KEGG: son:SO1807 phage shock protein A; phage shock protein A, PspA complement(3161232..3161915) Shewanella sp. ANA-3 4478412 YP_870282.1 CDS Shewana3_2649 NC_008577.1 3162093 3163181 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO1806 psp operon transcriptional activator; Fis family transcriptional regulator 3162093..3163181 Shewanella sp. ANA-3 4478413 YP_870283.1 CDS Shewana3_2650 NC_008577.1 3163251 3164876 D PFAM: extracellular solute-binding protein, family 5; KEGG: son:SO1805 peptide ABC transporter, periplasmic peptide-binding protein; acetate kinase 3163251..3164876 Shewanella sp. ANA-3 4478414 YP_870284.1 CDS Shewana3_2651 NC_008577.1 3164876 3165907 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1804 peptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3164876..3165907 Shewanella sp. ANA-3 4478415 YP_870285.1 CDS Shewana3_2652 NC_008577.1 3165894 3166784 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1803 peptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3165894..3166784 Shewanella sp. ANA-3 4478416 YP_870286.1 CDS Shewana3_2653 NC_008577.1 3166788 3167795 D TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; KEGG: son:SO1802 peptide ABC transporter, ATP-binding protein; oligopeptide/dipeptide ABC transporter ATPase 3166788..3167795 Shewanella sp. ANA-3 4478417 YP_870287.1 CDS Shewana3_2654 NC_008577.1 3167776 3168561 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1801 peptide ABC transporter, ATP-binding protein; ABC transporter-like protein 3167776..3168561 Shewanella sp. ANA-3 4478418 YP_870288.2 CDS Shewana3_2655 NC_008577.1 3168667 3169869 D enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 3168667..3169869 Shewanella sp. ANA-3 4478419 YP_870289.1 CDS Shewana3_2656 NC_008577.1 3169988 3170200 D TIGRFAM: Molybdenum-pterin binding; PFAM: TOBE domain protein; KEGG: mma:MM0224 molybdenum-pterin-binding-protein; molybdenum-pterin binding 3169988..3170200 Shewanella sp. ANA-3 4478420 YP_870290.1 CDS Shewana3_2657 NC_008577.1 3170350 3172215 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO1798 peptidyl-prolyl cis-trans isomerase D; PpiC-type peptidyl-prolyl cis-trans isomerase complement(3170350..3172215) Shewanella sp. ANA-3 4478421 YP_870291.1 CDS Shewana3_2658 NC_008577.1 3172442 3172714 R PFAM: histone family protein DNA-binding protein; KEGG: son:SO1797 DNA-binding protein, HU family; histone family protein DNA-binding protein complement(3172442..3172714) Shewanella sp. ANA-3 4478422 YP_870292.1 CDS Shewana3_2659 NC_008577.1 3172975 3175332 R KEGG: son:SO1796 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Lon-A peptidase complement(3172975..3175332) Shewanella sp. ANA-3 4478423 YP_870293.1 CDS clpX NC_008577.1 3175465 3176745 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(3175465..3176745) Shewanella sp. ANA-3 4478424 YP_870294.1 CDS clpP NC_008577.1 3176846 3177454 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(3176846..3177454) Shewanella sp. ANA-3 4478425 YP_870295.1 CDS tig NC_008577.1 3177544 3178848 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(3177544..3178848) Shewanella sp. ANA-3 4478426 YP_870296.1 CDS Shewana3_2663 NC_008577.1 3179719 3180573 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 3179719..3180573 Shewanella sp. ANA-3 4478430 YP_870297.1 CDS cysS NC_008577.1 3180798 3182183 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(3180798..3182183) Shewanella sp. ANA-3 4478431 YP_870298.1 CDS Shewana3_2665 NC_008577.1 3182318 3182809 D PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO1790 peptidyl-prolyl cis-trans isomerase B; cyclophilin type peptidyl-prolyl cis-trans isomerase 3182318..3182809 Shewanella sp. ANA-3 4478432 YP_870299.1 CDS Shewana3_2666 NC_008577.1 3182819 3183538 D catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 3182819..3183538 Shewanella sp. ANA-3 4478433 YP_870300.1 CDS Shewana3_2667 NC_008577.1 3183647 3184417 R PFAM: tRNA hydroxylase; KEGG: son:SO1788 tRNA-hydroxylase; tRNA hydroxylase complement(3183647..3184417) Shewanella sp. ANA-3 4478434 YP_870301.1 CDS Shewana3_2668 NC_008577.1 3184697 3185293 D PFAM: protein of unknown function DUF1282; KEGG: son:SO1787 hypothetical protein; hypothetical protein 3184697..3185293 Shewanella sp. ANA-3 4478435 YP_870302.1 CDS Shewana3_2669 NC_008577.1 3185503 3187173 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(3185503..3187173) Shewanella sp. ANA-3 4478436 YP_870303.1 CDS Shewana3_2670 NC_008577.1 3187357 3189651 R TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: son:SO1784 ferrous iron transport protein B; ferrous iron transport protein B complement(3187357..3189651) Shewanella sp. ANA-3 4478437 YP_870304.1 CDS Shewana3_2671 NC_008577.1 3189644 3189883 R PFAM: FeoA family protein; KEGG: son:SO1783 ferrous iron transport protein A; FeoA family protein complement(3189644..3189883) Shewanella sp. ANA-3 4478438 YP_870305.1 CDS Shewana3_2672 NC_008577.1 3190310 3191275 D TIGRFAM: cytochrome C family protein; KEGG: son:SO1782 decaheme cytochrome c MtrD; cytochrome C family protein 3190310..3191275 Shewanella sp. ANA-3 4478439 YP_870306.1 CDS Shewana3_2673 NC_008577.1 3191289 3193427 D KEGG: son:SO1781 outer membrane protein, putative; outer membrane protein 3191289..3193427 Shewanella sp. ANA-3 4478440 YP_870307.1 CDS Shewana3_2674 NC_008577.1 3193463 3195382 D KEGG: son:SO1780 decaheme cytochrome c MtrF; decaheme cytochrome c MtrF 3193463..3195382 Shewanella sp. ANA-3 4478441 YP_870308.1 CDS Shewana3_2675 NC_008577.1 3195628 3197802 D KEGG: son:SO1779 decaheme cytochrome c; decaheme cytochrome c 3195628..3197802 Shewanella sp. ANA-3 4478442 YP_870309.1 CDS Shewana3_2676 NC_008577.1 3198135 3200087 D KEGG: son:SO1778 decaheme cytochrome c; decaheme cytochrome c 3198135..3200087 Shewanella sp. ANA-3 4478443 YP_870310.1 CDS Shewana3_2677 NC_008577.1 3200156 3201145 D TIGRFAM: cytochrome C family protein; KEGG: son:SO1777 decaheme cytochrome c MtrA; cytochrome C family protein 3200156..3201145 Shewanella sp. ANA-3 4478444 YP_870311.1 CDS Shewana3_2678 NC_008577.1 3201158 3203245 D KEGG: son:SO1776 outer membrane protein precursor MtrB; outer membrane protein MtrB 3201158..3203245 Shewanella sp. ANA-3 4478445 YP_870312.1 CDS Shewana3_2679 NC_008577.1 3203471 3204085 D hypothetical protein 3203471..3204085 Shewanella sp. ANA-3 4478446 YP_870313.1 CDS Shewana3_2680 NC_008577.1 3204085 3204798 D KEGG: son:SO1775 phage SPO1 DNA polymerase domain protein; phage SPO1 DNA polymerase domain-containing protein 3204085..3204798 Shewanella sp. ANA-3 4478447 YP_870314.1 CDS Shewana3_2681 NC_008577.1 3204926 3206428 R PFAM: peptidase M4, thermolysin; Propeptide, PepSY amd peptidase M4; KEGG: pae:PA3724 elastase LasB; vibriolysin complement(3204926..3206428) Shewanella sp. ANA-3 4478448 YP_870315.1 CDS Shewana3_2682 NC_008577.1 3206661 3207893 D PFAM: sugar diacid recognition domain protein; KEGG: son:SO1774 hypothetical sugar diacid utilization regulator; CdaR family transcriptional regulator 3206661..3207893 Shewanella sp. ANA-3 4478449 YP_870316.1 CDS Shewana3_2683 NC_008577.1 3208133 3209131 D PFAM: Catalase domain protein; KEGG: son:SO1771.2 hypothetical catalase; catalase domain-containing protein 3208133..3209131 Shewanella sp. ANA-3 4478450 YP_870317.1 CDS Shewana3_2684 NC_008577.1 3209402 3210760 D PFAM: Gluconate transporter; Citrate transporter; KEGG: son:SO1771 permease, GntP family; gluconate transporter 3209402..3210760 Shewanella sp. ANA-3 4478451 YP_870318.1 CDS Shewana3_2685 NC_008577.1 3210819 3211964 D PFAM: glycerate kinase; KEGG: son:SO1770 glycerate kinase; glycerate kinase 3210819..3211964 Shewanella sp. ANA-3 4478452 YP_870319.1 CDS Shewana3_2686 NC_008577.1 3212207 3213856 D PFAM: Pyridoxal-dependent decarboxylase; KEGG: son:SO1769 glutamate decarboxylase, putative; pyridoxal-dependent decarboxylase 3212207..3213856 Shewanella sp. ANA-3 4478453 YP_870320.1 CDS Shewana3_2687 NC_008577.1 3214353 3215249 R KEGG: tcx:Tcr_0663 NAD-dependent DNA ligase (contains BRCT domain type II)-like; NAD-dependent DNA ligase complement(3214353..3215249) Shewanella sp. ANA-3 4478454 YP_870321.1 CDS Shewana3_2688 NC_008577.1 3216033 3216488 D hypothetical protein 3216033..3216488 Shewanella sp. ANA-3 4478455 YP_870322.1 CDS Shewana3_2689 NC_008577.1 3216571 3216978 D hypothetical protein 3216571..3216978 Shewanella sp. ANA-3 4478456 YP_870323.1 CDS Shewana3_2690 NC_008577.1 3217121 3217888 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr3115 short chain dehydrogenase; short chain dehydrogenase 3217121..3217888 Shewanella sp. ANA-3 4478457 YP_870324.1 CDS Shewana3_2691 NC_008577.1 3217902 3218795 D TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein, AraC type; methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: ilo:IL0070 O6-methylguanine-DNA methyltransferase; DNA-O6-methylguanine--protein-cysteine S-methyltransferase/transcriptional regulator Ada 3217902..3218795 Shewanella sp. ANA-3 4478458 YP_870325.1 CDS Shewana3_2692 NC_008577.1 3218902 3219576 D KEGG: son:SO1763 streptogramin A acetyl transferase; streptogramin A acetyl transferase 3218902..3219576 Shewanella sp. ANA-3 4478459 YP_870326.1 CDS Shewana3_2693 NC_008577.1 3219746 3220582 D PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO1762 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator 3219746..3220582 Shewanella sp. ANA-3 4478460 YP_870327.1 CDS Shewana3_2694 NC_008577.1 3220649 3221416 D PFAM: AzlC family protein; KEGG: son:SO1760 AzlC family protein; AzlC family protein 3220649..3221416 Shewanella sp. ANA-3 4478461 YP_870328.1 CDS Shewana3_2695 NC_008577.1 3221413 3221715 D PFAM: branched-chain amino acid transport; KEGG: son:SO1759 hypothetical protein; branched-chain amino acid transport 3221413..3221715 Shewanella sp. ANA-3 4478462 YP_870329.1 CDS Shewana3_2696 NC_008577.1 3221705 3223063 R PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_3038 multiple antibiotic resistance (MarC)-related proteins; major facilitator superfamily transporter complement(3221705..3223063) Shewanella sp. ANA-3 4478463 YP_870330.1 CDS Shewana3_2697 NC_008577.1 3223185 3224369 R TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase; N-acetylglucosamine 6-phosphate deacetylase complement(3223185..3224369) Shewanella sp. ANA-3 4479101 YP_870331.1 CDS Shewana3_2698 NC_008577.1 3224359 3225285 R PFAM: ROK family protein; KEGG: yps:YPTB2439 hypothetical protein; N-acetylglucosamine kinase complement(3224359..3225285) Shewanella sp. ANA-3 4479102 YP_870332.1 CDS Shewana3_2699 NC_008577.1 3225306 3226466 R PFAM: sugar isomerase (SIS); KEGG: vvy:VVA1515 predicted phosphosugar isomerase; sugar isomerase (SIS) complement(3225306..3226466) Shewanella sp. ANA-3 4479103 YP_870333.1 CDS Shewana3_2700 NC_008577.1 3226474 3227760 R PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; KEGG: ecj:JW3101 tagatose 6-phosphate aldolase 1, kbaZ subunit; tagatose-bisphosphate aldolase noncatalytic subunit complement(3226474..3227760) Shewanella sp. ANA-3 4479104 YP_870334.1 CDS Shewana3_2701 NC_008577.1 3227766 3229136 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: oxidoreductase domain protein; KEGG: son:SO3120 oxidoreductase, Gfo/Idh/MocA family; oxidoreductase domain-containing protein complement(3227766..3229136) Shewanella sp. ANA-3 4479105 YP_870335.1 CDS Shewana3_2702 NC_008577.1 3229149 3229934 R PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: ppr:PBPRB0140 putative DeoR-family regulatory protein; DeoR family transcriptional regulator complement(3229149..3229934) Shewanella sp. ANA-3 4479106 YP_870336.1 CDS Shewana3_2703 NC_008577.1 3230269 3233124 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_0238 TonB-dependent receptor; TonB-dependent receptor 3230269..3233124 Shewanella sp. ANA-3 4479107 YP_870337.1 CDS Shewana3_2704 NC_008577.1 3233172 3233870 R PFAM: Helix-turn-helix, type 11 domain protein; KEGG: son:SO1758 hypothetical protein; helix-turn-helix, type 11 domain-containing protein complement(3233172..3233870) Shewanella sp. ANA-3 4479108 YP_870338.1 CDS Shewana3_2705 NC_008577.1 3233980 3234429 R PFAM: transcription activator, effector binding; KEGG: son:SO1757 hypothetical protein; transcription activator, effector binding complement(3233980..3234429) Shewanella sp. ANA-3 4479109 YP_870339.1 CDS Shewana3_2706 NC_008577.1 3234601 3234984 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO1756 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(3234601..3234984) Shewanella sp. ANA-3 4479110 YP_870340.1 CDS Shewana3_2707 NC_008577.1 3235137 3236858 R PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: son:SO1755 phosphoglucomutase/phosphomannomutase family protein; phosphoglucomutase/phosphomannomutase alpha/beta/subunit complement(3235137..3236858) Shewanella sp. ANA-3 4479111 YP_870341.1 CDS Shewana3_2708 NC_008577.1 3237131 3237436 R KEGG: son:SO1753 hypothetical protein; hypothetical protein complement(3237131..3237436) Shewanella sp. ANA-3 4479112 YP_870342.1 CDS Shewana3_2709 NC_008577.1 3237925 3239454 R KEGG: son:SO1748 hypothetical protein; hypothetical protein complement(3237925..3239454) Shewanella sp. ANA-3 4479113 YP_870343.1 CDS Shewana3_2710 NC_008577.1 3239622 3240599 R PFAM: Integral membrane protein TerC; KEGG: son:SO1747 membrane protein, putative; integral membrane protein TerC complement(3239622..3240599) Shewanella sp. ANA-3 4479114 YP_870344.1 CDS Shewana3_2711 NC_008577.1 3241072 3241356 R KEGG: son:SO1746 hypothetical protein; hypothetical protein complement(3241072..3241356) Shewanella sp. ANA-3 4479115 YP_870345.1 CDS Shewana3_2712 NC_008577.1 3241383 3242567 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO1745 3-beta hydroxysteroid dehydrogenase/isomerase family protein; 3-beta hydroxysteroid dehydrogenase/isomerase complement(3241383..3242567) Shewanella sp. ANA-3 4479116 YP_870346.1 CDS Shewana3_2713 NC_008577.1 3242653 3244479 R Catalyzes the specific recognition and activation of amino acids during peptide synthesis; peptide synthase complement(3242653..3244479) Shewanella sp. ANA-3 4479117 YP_870347.1 CDS Shewana3_2714 NC_008577.1 3244479 3245441 R PFAM: alpha/beta hydrolase fold; KEGG: son:SO1743 hydrolase, alpha/beta hydrolase fold family; alpha/beta hydrolase fold domain-containing protein complement(3244479..3245441) Shewanella sp. ANA-3 4479118 YP_870348.1 CDS Shewana3_2715 NC_008577.1 3245612 3246661 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(3245612..3246661) Shewanella sp. ANA-3 4479119 YP_870349.1 CDS Shewana3_2716 NC_008577.1 3246916 3248286 R KEGG: son:SO1741 hypothetical protein; hypothetical protein complement(3246916..3248286) Shewanella sp. ANA-3 4479120 YP_870350.1 CDS Shewana3_2717 NC_008577.1 3248618 3248851 D PFAM: protein of unknown function DUF1289; KEGG: son:SO1739 hypothetical protein; hypothetical protein 3248618..3248851 Shewanella sp. ANA-3 4479121 YP_870351.1 CDS Shewana3_2718 NC_008577.1 3248877 3249239 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: son:SO1738 hypothetical protein; hypothetical protein complement(3248877..3249239) Shewanella sp. ANA-3 4479122 YP_870352.1 CDS Shewana3_2719 NC_008577.1 3249328 3251304 R KEGG: pae:PA5291 probable choline transporter; TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; choline/carnitine/betaine transporter complement(3249328..3251304) Shewanella sp. ANA-3 4479123 YP_870353.1 CDS Shewana3_2720 NC_008577.1 3251958 3252563 R KEGG: son:SO1736 hypothetical protein; hypothetical protein complement(3251958..3252563) Shewanella sp. ANA-3 4479124 YP_870354.1 CDS Shewana3_2721 NC_008577.1 3252719 3253114 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO1734 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 3252719..3253114 Shewanella sp. ANA-3 4479125 YP_870355.1 CDS Shewana3_2722 NC_008577.1 3253167 3254054 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pha:PSHAb0146 putative transcriptional regulator (LysR family); LysR family transcriptional regulator complement(3253167..3254054) Shewanella sp. ANA-3 4479126 YP_870356.1 CDS Shewana3_2723 NC_008577.1 3254148 3255077 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: ilo:IL2191 predicted permease, DMT superfamily; hypothetical protein 3254148..3255077 Shewanella sp. ANA-3 4479127 YP_870357.1 CDS Shewana3_2724 NC_008577.1 3255834 3256268 D PFAM: GCN5-related N-acetyltransferase; KEGG: vch:VCA0470 acetyltransferase, putative; N-acetyltransferase GCN5 3255834..3256268 Shewanella sp. ANA-3 4479128 YP_870358.1 CDS Shewana3_2725 NC_008577.1 3256420 3257145 D hypothetical protein 3256420..3257145 Shewanella sp. ANA-3 4479129 YP_870359.1 CDS Shewana3_2726 NC_008577.1 3257285 3258676 D KEGG: vvy:VV1783 hypothetical protein; hypothetical protein 3257285..3258676 Shewanella sp. ANA-3 4479130 YP_870360.1 CDS Shewana3_2727 NC_008577.1 3258711 3259052 D hypothetical protein 3258711..3259052 Shewanella sp. ANA-3 4479131 YP_870361.1 CDS Shewana3_2728 NC_008577.1 3259143 3259592 D hypothetical protein 3259143..3259592 Shewanella sp. ANA-3 4479132 YP_870362.1 CDS Shewana3_2729 NC_008577.1 3259609 3260208 D KEGG: son:SO3073 hypothetical protein; hypothetical protein 3259609..3260208 Shewanella sp. ANA-3 4479133 YP_870363.1 CDS Shewana3_2730 NC_008577.1 3260288 3260740 D KEGG: cvi:CV1058 hypothetical protein; hypothetical protein 3260288..3260740 Shewanella sp. ANA-3 4479134 YP_870364.1 CDS Shewana3_2731 NC_008577.1 3261151 3261861 R regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU complement(3261151..3261861) Shewanella sp. ANA-3 4479135 YP_870365.1 CDS Shewana3_2732 NC_008577.1 3261989 3262807 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(3261989..3262807) Shewanella sp. ANA-3 4479136 YP_870366.1 CDS Shewana3_2733 NC_008577.1 3262841 3264499 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1724 phosphate ABC transporter, permease protein, putative; phosphate ABC transporter permease complement(3262841..3264499) Shewanella sp. ANA-3 4479137 YP_870367.1 CDS Shewana3_2734 NC_008577.1 3264559 3266817 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1723 phosphate ABC transporter, permease protein, putative; binding-protein-dependent transport system inner membrane protein complement(3264559..3266817) Shewanella sp. ANA-3 4479138 YP_870368.1 CDS Shewana3_2735 NC_008577.1 3267017 3267517 D PFAM: amino acid-binding ACT domain protein; KEGG: son:SO1722 ACT domain protein; ACT domain-containing protein 3267017..3267517 Shewanella sp. ANA-3 4479139 YP_870369.1 CDS Shewana3_2736 NC_008577.1 3267578 3268465 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: hch:HCH_00260 permease of the drug/metabolite transporter (DMT) superfamily; hypothetical protein complement(3267578..3268465) Shewanella sp. ANA-3 4479140 YP_870370.1 CDS Shewana3_2737 NC_008577.1 3268561 3269721 R PFAM: putative esterase; KEGG: ilo:IL2526 predicted hydrolase of the alpha/beta superfamily; putative esterase complement(3268561..3269721) Shewanella sp. ANA-3 4479141 YP_870371.1 CDS Shewana3_2738 NC_008577.1 3269967 3270791 D KEGG: son:SO1718 hypothetical protein; hypothetical protein 3269967..3270791 Shewanella sp. ANA-3 4479142 YP_870372.1 CDS Shewana3_2739 NC_008577.1 3271044 3271616 D hypothetical protein 3271044..3271616 Shewanella sp. ANA-3 4479143 YP_870373.1 CDS Shewana3_2740 NC_008577.1 3271742 3272140 R KEGG: bbr:BB1298 hypothetical protein; hypothetical protein complement(3271742..3272140) Shewanella sp. ANA-3 4479144 YP_870374.1 CDS Shewana3_2741 NC_008577.1 3272444 3273046 R KEGG: son:SO1717 hypothetical protein; hypothetical protein complement(3272444..3273046) Shewanella sp. ANA-3 4479145 YP_870375.1 CDS Shewana3_2742 NC_008577.1 3273362 3273955 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO1716 transporter, LysE family; lysine exporter protein LysE/YggA 3273362..3273955 Shewanella sp. ANA-3 4479146 YP_870376.1 CDS Shewana3_2743 NC_008577.1 3273983 3274531 D PFAM: protein of unknown function DUF1415; KEGG: son:SO1715 hypothetical protein; hypothetical protein 3273983..3274531 Shewanella sp. ANA-3 4479147 YP_870377.1 CDS Shewana3_2744 NC_008577.1 3274760 3275080 R KEGG: son:SO1710 hypothetical protein; hypothetical protein complement(3274760..3275080) Shewanella sp. ANA-3 4479148 YP_870378.1 CDS Shewana3_2745 NC_008577.1 3275449 3277014 D PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: cps:CPS_0753 alkaline serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin 3275449..3277014 Shewanella sp. ANA-3 4479149 YP_870379.1 CDS Shewana3_2746 NC_008577.1 3277084 3277914 R hypothetical protein complement(3277084..3277914) Shewanella sp. ANA-3 4479150 YP_870380.1 CDS Shewana3_2747 NC_008577.1 3278145 3279431 R PFAM: acetyl-CoA hydrolase/transferase; KEGG: son:SO1708 4-hydroxybutyrate coenzyme A transferase; acetyl-CoA hydrolase/transferase complement(3278145..3279431) Shewanella sp. ANA-3 4479151 YP_870381.1 CDS Shewana3_2748 NC_008577.1 3279670 3280791 R PFAM: ABC-2 type transporter; KEGG: son:SO1707 ABC transporter, permease protein, putative; ABC transporter complement(3279670..3280791) Shewanella sp. ANA-3 4479152 YP_870382.1 CDS Shewana3_2749 NC_008577.1 3280781 3281821 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vvu:VV20598 ABC-type multidrug transport system, ATPase component; ABC transporter-like protein complement(3280781..3281821) Shewanella sp. ANA-3 4478234 YP_870383.1 CDS Shewana3_2750 NC_008577.1 3281818 3282831 R PFAM: secretion protein HlyD family protein; KEGG: son:SO1705 putative HlyD family secretion protein; secretion protein HlyD family protein complement(3281818..3282831) Shewanella sp. ANA-3 4478235 YP_870384.1 CDS Shewana3_2751 NC_008577.1 3282831 3283529 R PFAM: regulatory protein, TetR; KEGG: ppr:PBPRA0420 putative transcriptional regulator; TetR family transcriptional regulator complement(3282831..3283529) Shewanella sp. ANA-3 4478236 YP_870385.1 CDS Shewana3_2752 NC_008577.1 3283705 3284073 R KEGG: son:SO1702 hypothetical protein; hypothetical protein complement(3283705..3284073) Shewanella sp. ANA-3 4478237 YP_870386.1 CDS Shewana3_2753 NC_008577.1 3284552 3285409 D KEGG: son:SO1701 hypothetical protein; hypothetical protein 3284552..3285409 Shewanella sp. ANA-3 4478238 YP_870387.1 CDS Shewana3_2754 NC_008577.1 3285420 3286748 D KEGG: son:SO1700 hypothetical protein; hypothetical protein 3285420..3286748 Shewanella sp. ANA-3 4479398 YP_870388.1 CDS Shewana3_2755 NC_008577.1 3287109 3290351 D PFAM: transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO1699 transcriptional regulator; transcriptional regulator 3287109..3290351 Shewanella sp. ANA-3 4479399 YP_870389.1 CDS Shewana3_2756 NC_008577.1 3290388 3290765 D KEGG: son:SO1698 hypothetical protein; hypothetical protein 3290388..3290765 Shewanella sp. ANA-3 4479400 YP_870390.1 CDS Shewana3_2757 NC_008577.1 3291098 3292117 D KEGG: son:SO1695 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; diguanylate cyclase 3291098..3292117 Shewanella sp. ANA-3 4479401 YP_870391.1 CDS Shewana3_2758 NC_008577.1 3292178 3294868 D PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: son:SO1694 FAD-binding protein; FAD linked oxidase domain-containing protein 3292178..3294868 Shewanella sp. ANA-3 4479402 YP_870392.1 CDS Shewana3_2759 NC_008577.1 3295045 3295941 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO1692 hypothetical protein; hypothetical protein 3295045..3295941 Shewanella sp. ANA-3 4479403 YP_870393.1 CDS Shewana3_2760 NC_008577.1 3296071 3297711 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1690 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(3296071..3297711) Shewanella sp. ANA-3 4479404 YP_870394.1 CDS Shewana3_2761 NC_008577.1 3298139 3300400 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: son:SO1689 cation transport ATPase, E1-E2 family; copper-translocating P-type ATPase complement(3298139..3300400) Shewanella sp. ANA-3 4479405 YP_870395.1 CDS Shewana3_2762 NC_008577.1 3300537 3300926 D PFAM: regulatory protein, MerR; KEGG: son:SO1687 transcriptional regulator, MerR family; MerR family transcriptional regulator 3300537..3300926 Shewanella sp. ANA-3 4479406 YP_870396.1 CDS Shewana3_2763 NC_008577.1 3301029 3303062 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO1686 prolyl oligopeptidase family protein; peptidase S9 prolyl oligopeptidase complement(3301029..3303062) Shewanella sp. ANA-3 4479407 YP_870397.1 CDS Shewana3_2764 NC_008577.1 3303121 3303363 R KEGG: son:SO1685 hypothetical protein; hypothetical protein complement(3303121..3303363) Shewanella sp. ANA-3 4479408 YP_870398.1 CDS fabG NC_008577.1 3303571 3304329 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(3303571..3304329) Shewanella sp. ANA-3 4479409 YP_870399.1 CDS Shewana3_2766 NC_008577.1 3304349 3305251 R TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: son:SO1682 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase complement(3304349..3305251) Shewanella sp. ANA-3 4479410 YP_870400.1 CDS Shewana3_2767 NC_008577.1 3305352 3306503 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: son:SO1681 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase complement(3305352..3306503) Shewanella sp. ANA-3 4479411 YP_870401.1 CDS Shewana3_2768 NC_008577.1 3306503 3307276 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3306503..3307276) Shewanella sp. ANA-3 4479412 YP_870402.1 CDS Shewana3_2769 NC_008577.1 3307341 3308498 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal; KEGG: son:SO1679 acyl-CoA dehydrogenase family protein; acyl-CoA dehydrogenase domain-containing protein complement(3307341..3308498) Shewanella sp. ANA-3 4479413 YP_870403.1 CDS Shewana3_2770 NC_008577.1 3308662 3310161 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: son:SO1678 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(3308662..3310161) Shewanella sp. ANA-3 4479414 YP_870404.1 CDS Shewana3_2771 NC_008577.1 3310297 3311487 R TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; KEGG: son:SO1677 acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase complement(3310297..3311487) Shewanella sp. ANA-3 4479758 YP_870405.1 CDS Shewana3_2772 NC_008577.1 3311879 3312820 R catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase complement(3311879..3312820) Shewanella sp. ANA-3 4479759 YP_870406.1 CDS Shewana3_2773 NC_008577.1 3312890 3313324 R KEGG: son:SO1675 hypothetical protein; hypothetical protein complement(3312890..3313324) Shewanella sp. ANA-3 4479760 YP_870407.1 CDS Shewana3_2774 NC_008577.1 3313409 3314185 D KEGG: son:SO1674 short chain dehydrogenase family protein; short chain dehydrogenase family protein 3313409..3314185 Shewanella sp. ANA-3 4479761 YP_870408.1 CDS Shewana3_2775 NC_008577.1 3314270 3314926 R receptor for colicin S4; outer membrane protein W complement(3314270..3314926) Shewanella sp. ANA-3 4479762 YP_870409.1 CDS Shewana3_2776 NC_008577.1 3315385 3315972 R PFAM: protein of unknown function DUF925; KEGG: son:SO1672 hypothetical protein; hypothetical protein complement(3315385..3315972) Shewanella sp. ANA-3 4479763 YP_870410.1 CDS Shewana3_2777 NC_008577.1 3316071 3316721 R TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: son:SO1671 glutathione S-transferase family protein; maleylacetoacetate isomerase complement(3316071..3316721) Shewanella sp. ANA-3 4479764 YP_870411.1 CDS Shewana3_2778 NC_008577.1 3316806 3317792 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: son:SO1670 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase complement(3316806..3317792) Shewanella sp. ANA-3 4479765 YP_870412.1 CDS Shewana3_2779 NC_008577.1 3318131 3319669 R PFAM: sigma-54 factor, interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: AAA ATPase; KEGG: son:SO1669 transcriptional regulatory protein TyrR; transcriptional regulator TyrR complement(3318131..3319669) Shewanella sp. ANA-3 4479766 YP_870413.1 CDS phhB NC_008577.1 3319945 3320283 R 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase complement(3319945..3320283) Shewanella sp. ANA-3 4479767 YP_870414.1 CDS phhA NC_008577.1 3320366 3321181 R phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase complement(3320366..3321181) Shewanella sp. ANA-3 4479768 YP_870415.1 CDS Shewana3_2782 NC_008577.1 3321505 3322413 D TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: son:SO1665 UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose pyrophosphorylase 3321505..3322413 Shewanella sp. ANA-3 4479769 YP_870416.1 CDS Shewana3_2783 NC_008577.1 3322413 3323426 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO1664 UDP-glucose 4-epimerase; UDP-galactose 4-epimerase 3322413..3323426 Shewanella sp. ANA-3 4479770 YP_870417.1 CDS Shewana3_2784 NC_008577.1 3323500 3323985 D TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1663 ferredoxin-type protein NapF; ferredoxin-type protein NapF 3323500..3323985 Shewanella sp. ANA-3 4479771 YP_870418.1 CDS Shewana3_2785 NC_008577.1 3324079 3324522 D PFAM: protein of unknown function DUF583; KEGG: son:SO1662 hypothetical Ccm2-related protein; hypothetical protein 3324079..3324522 Shewanella sp. ANA-3 4479772 YP_870419.1 CDS Shewana3_2786 NC_008577.1 3324641 3325654 D PFAM: regulatory protein, LysR; KEGG: son:SO1661 transcriptional regulator, LysR family; LysR family transcriptional regulator 3324641..3325654 Shewanella sp. ANA-3 4479773 YP_870420.1 CDS Shewana3_2787 NC_008577.1 3326079 3328367 D KEGG: son:SO1659 decaheme cytochrome c; decaheme cytochrome c 3326079..3328367 Shewanella sp. ANA-3 4479774 YP_870421.1 CDS Shewana3_2788 NC_008577.1 3328480 3329154 R KEGG: son:SO1658 hypothetical protein; hypothetical protein complement(3328480..3329154) Shewanella sp. ANA-3 4479775 YP_870422.1 CDS Shewana3_2789 NC_008577.1 3329159 3329893 R PFAM: protein of unknown function DUF218; KEGG: son:SO1657 hypothetical protein; hypothetical protein complement(3329159..3329893) Shewanella sp. ANA-3 4479776 YP_870423.1 CDS Shewana3_2790 NC_008577.1 3330001 3330921 R catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase complement(3330001..3330921) Shewanella sp. ANA-3 4479777 YP_870424.1 CDS Shewana3_2791 NC_008577.1 3330984 3331790 R TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: son:SO1655 cysQ protein; 3'(2'),5'-bisphosphate nucleotidase complement(3330984..3331790) Shewanella sp. ANA-3 4479778 YP_870425.1 CDS Shewana3_2792 NC_008577.1 3331780 3332076 R hypothetical protein complement(3331780..3332076) Shewanella sp. ANA-3 4479779 YP_870426.1 CDS Shewana3_2793 NC_008577.1 3332138 3333232 R PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: son:SO1653 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(3332138..3333232) Shewanella sp. ANA-3 4479780 YP_870427.1 CDS Shewana3_2794 NC_008577.1 3333270 3334028 R PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: son:SO1652 putative histidinol phosphatase; putative hydrolase complement(3333270..3334028) Shewanella sp. ANA-3 4479781 YP_870428.1 CDS Shewana3_2795 NC_008577.1 3334103 3337351 R PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SMART: DEAD/DEAH box helicase domain protein; KEGG: son:SO1651 Snf2 family protein; SNF2-like protein complement(3334103..3337351) Shewanella sp. ANA-3 4479782 YP_870429.1 CDS Shewana3_2796 NC_008577.1 3337536 3339359 R PFAM: protein of unknown function DUF885; KEGG: cps:CPS_4234 hypothetical protein; hypothetical protein complement(3337536..3339359) Shewanella sp. ANA-3 4479783 YP_870430.1 CDS Shewana3_2797 NC_008577.1 3339625 3341571 R TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: son:SO1647 glutathione-regulated potassium-efflux system protein KefB, putative; potassium efflux system protein complement(3339625..3341571) Shewanella sp. ANA-3 4479784 YP_870431.1 CDS Shewana3_2798 NC_008577.1 3341742 3342632 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1646 GGDEF family protein; diguanylate cyclase 3341742..3342632 Shewanella sp. ANA-3 4479785 YP_870432.1 CDS Shewana3_2799 NC_008577.1 3342683 3344080 R TIGRFAM: tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase-like; PFAM: PP-loop domain protein; KEGG: son:SO1645 cell cycle protein MesJ; tRNA(Ile)-lysidine synthetase complement(3342683..3344080) Shewanella sp. ANA-3 4479786 YP_870433.1 CDS dnaE NC_008577.1 3344158 3347634 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(3344158..3347634) Shewanella sp. ANA-3 4479787 YP_870434.1 CDS rnhB NC_008577.1 3347752 3348381 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(3347752..3348381) Shewanella sp. ANA-3 4479788 YP_870435.1 CDS lpxB NC_008577.1 3348381 3349538 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(3348381..3349538) Shewanella sp. ANA-3 4479789 YP_870436.1 CDS Shewana3_2803 NC_008577.1 3349655 3350425 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(3349655..3350425) Shewanella sp. ANA-3 4479790 YP_870437.1 CDS fabZ NC_008577.1 3350422 3350874 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(3350422..3350874) Shewanella sp. ANA-3 4479791 YP_870438.1 CDS lpxD NC_008577.1 3350919 3351944 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(3350919..3351944) Shewanella sp. ANA-3 4479792 YP_870439.1 CDS Shewana3_2806 NC_008577.1 3351948 3352445 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: son:SO1638 outer membrane protein OmpH; outer membrane chaperone Skp complement(3351948..3352445) Shewanella sp. ANA-3 4479793 YP_870440.1 CDS Shewana3_2807 NC_008577.1 3352511 3354991 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: son:SO1637 bacterial surface antigen; surface antigen (D15) complement(3352511..3354991) Shewanella sp. ANA-3 4479794 YP_870441.1 CDS Shewana3_2808 NC_008577.1 3355023 3356393 R TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: son:SO1636 membrane-associated zinc metalloprotease, putative; peptidase RseP complement(3355023..3356393) Shewanella sp. ANA-3 4479795 YP_870442.1 CDS Shewana3_2809 NC_008577.1 3356445 3357635 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(3356445..3357635) Shewanella sp. ANA-3 4479796 YP_870443.1 CDS Shewana3_2810 NC_008577.1 3357640 3358497 R PFAM: phosphatidate cytidylyltransferase; KEGG: son:SO1634 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(3357640..3358497) Shewanella sp. ANA-3 4479797 YP_870444.1 CDS Shewana3_2811 NC_008577.1 3358518 3359345 R TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; KEGG: son:SO1633 undecaprenyl diphosphate synthase; undecaprenyl pyrophosphate synthetase complement(3358518..3359345) Shewanella sp. ANA-3 4479798 YP_870445.1 CDS frr NC_008577.1 3359428 3359985 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(3359428..3359985) Shewanella sp. ANA-3 4479799 YP_870446.1 CDS pyrH NC_008577.1 3360015 3360743 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(3360015..3360743) Shewanella sp. ANA-3 4479800 YP_870447.1 CDS tsf NC_008577.1 3360814 3361665 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(3360814..3361665) Shewanella sp. ANA-3 4479801 YP_870448.1 CDS rpsB NC_008577.1 3361785 3362513 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(3361785..3362513) Shewanella sp. ANA-3 4479802 YP_870449.1 CDS Shewana3_2816 NC_008577.1 3362783 3363619 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 3362783..3363619 Shewanella sp. ANA-3 4479804 YP_870450.1 CDS Shewana3_2817 NC_008577.1 3363688 3366273 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 3363688..3366273 Shewanella sp. ANA-3 4479805 YP_870451.1 CDS dapD NC_008577.1 3366292 3367116 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 3366292..3367116 Shewanella sp. ANA-3 4479806 YP_870452.1 CDS Shewana3_2819 NC_008577.1 3367385 3367738 D KEGG: cps:CPS_4299 hypothetical protein; hypothetical protein 3367385..3367738 Shewanella sp. ANA-3 4479807 YP_870453.1 CDS Shewana3_2820 NC_008577.1 3367813 3369741 R PFAM: CBS domain containing protein; GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mag:amb0553 response regulator; metal dependent phosphohydrolase complement(3367813..3369741) Shewanella sp. ANA-3 4479808 YP_870454.1 CDS purU NC_008577.1 3369927 3370829 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(3369927..3370829) Shewanella sp. ANA-3 4479809 YP_870455.1 CDS Shewana3_2822 NC_008577.1 3370959 3372317 R TIGRFAM: PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: son:SO1623 PTS system, glucose-specific IIBC component; PTS system glucose-like transporter subunit IIB complement(3370959..3372317) Shewanella sp. ANA-3 4479810 YP_870456.1 CDS Shewana3_2823 NC_008577.1 3372392 3372856 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(3372392..3372856) Shewanella sp. ANA-3 4479811 YP_870457.1 CDS Shewana3_2824 NC_008577.1 3373305 3374159 R PFAM: pseudouridine synthase; KEGG: vpa:VP2322 pseudouridine synthase Rlu family protein; tRNA pseudouridine synthase C complement(3373305..3374159) Shewanella sp. ANA-3 4479812 YP_870458.1 CDS Shewana3_2825 NC_008577.1 3374146 3374481 R PFAM: protein of unknown function DUF446; KEGG: son:SO1619 hypothetical protein; dTDP-4-dehydrorhamnose 3,5-epimerase complement(3374146..3374481) Shewanella sp. ANA-3 4479813 YP_870459.1 CDS Shewana3_2826 NC_008577.1 3374613 3375626 D KEGG: son:SO1618 hypothetical protein; hypothetical protein 3374613..3375626 Shewanella sp. ANA-3 4479814 YP_870460.1 CDS Shewana3_2827 NC_008577.1 3375623 3376009 D KEGG: son:SO1617 hypothetical protein; hypothetical protein 3375623..3376009 Shewanella sp. ANA-3 4479815 YP_870461.1 CDS Shewana3_2828 NC_008577.1 3377666 3377971 R KEGG: son:SO1615 hypothetical protein; hypothetical protein complement(3377666..3377971) Shewanella sp. ANA-3 4479816 YP_870462.1 CDS Shewana3_2829 NC_008577.1 3377964 3378602 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1614 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(3377964..3378602) Shewanella sp. ANA-3 4479817 YP_870463.1 CDS Shewana3_2830 NC_008577.1 3378747 3378980 D KEGG: son:SO1613 hypothetical protein; hypothetical protein 3378747..3378980 Shewanella sp. ANA-3 4479818 YP_870464.1 CDS Shewana3_2831 NC_008577.1 3379030 3379428 R KEGG: son:SO1612 hypothetical protein; hypothetical protein complement(3379030..3379428) Shewanella sp. ANA-3 4479819 YP_870465.1 CDS Shewana3_2832 NC_008577.1 3379576 3379959 D KEGG: son:SO1611 hypothetical protein; hypothetical protein 3379576..3379959 Shewanella sp. ANA-3 4479820 YP_870466.1 CDS Shewana3_2833 NC_008577.1 3379959 3380732 D KEGG: son:SO1610 hypothetical protein; hypothetical protein 3379959..3380732 Shewanella sp. ANA-3 4479821 YP_870467.1 CDS Shewana3_2834 NC_008577.1 3380840 3381385 R putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd complement(3380840..3381385) Shewanella sp. ANA-3 4479822 YP_870468.1 CDS queF NC_008577.1 3381517 3382410 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3381517..3382410 Shewanella sp. ANA-3 4479823 YP_870469.1 CDS Shewana3_2836 NC_008577.1 3382505 3383245 R PFAM: SpoOM family protein; KEGG: pha:PSHAa0857 SpoOM-related protein; SpoOM family protein complement(3382505..3383245) Shewanella sp. ANA-3 4479824 YP_870470.1 CDS Shewana3_2837 NC_008577.1 3383307 3383828 R KEGG: son:SO1605 lipoprotein, putative; putative lipoprotein complement(3383307..3383828) Shewanella sp. ANA-3 4479825 YP_870471.1 CDS Shewana3_2838 NC_008577.1 3384087 3385085 R PFAM: 4'-phosphopantetheinyl transferase; KEGG: son:SO1604 4'-phosphopantetheinyl transferase family protein; 4'-phosphopantetheinyl transferase complement(3384087..3385085) Shewanella sp. ANA-3 4479826 YP_870472.1 CDS Shewana3_2839 NC_008577.1 3385466 3386335 D KEGG: son:SO1603 transcriptional regulator, putative; transcriptional regulator 3385466..3386335 Shewanella sp. ANA-3 4479827 YP_870473.1 CDS Shewana3_2840 NC_008577.1 3386332 3394206 D PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KEGG: son:SO1602 multi-domain beta-ketoacyl synthase; beta-ketoacyl synthase 3386332..3394206 Shewanella sp. ANA-3 4478715 YP_870474.1 CDS Shewana3_2841 NC_008577.1 3394311 3396575 D KEGG: ppr:PBPRA1459 omega-3 polyunsaturated fatty acid synthase PfaB; omega-3 polyunsaturated fatty acid synthase PfaB 3394311..3396575 Shewanella sp. ANA-3 4478716 YP_870475.1 CDS Shewana3_2842 NC_008577.1 3396584 3402553 D PFAM: beta-ketoacyl synthase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: son:SO1599 multi-domain beta-ketoacyl synthase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ 3396584..3402553 Shewanella sp. ANA-3 4478717 YP_870476.1 CDS Shewana3_2843 NC_008577.1 3402696 3404342 D PFAM: 2-nitropropane dioxygenase, NPD; KEGG: son:SO1597 hypothetical protein; 2-nitropropane dioxygenase 3402696..3404342 Shewanella sp. ANA-3 4478718 YP_870477.1 CDS Shewana3_2844 NC_008577.1 3404957 3405271 D hypothetical protein 3404957..3405271 Shewanella sp. ANA-3 4478719 YP_870478.1 CDS Shewana3_2845 NC_008577.1 3405443 3405871 D hypothetical protein 3405443..3405871 Shewanella sp. ANA-3 4478720 YP_870479.1 CDS Shewana3_2846 NC_008577.1 3406480 3408093 R KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase complement(3406480..3408093) Shewanella sp. ANA-3 4478721 YP_870480.1 CDS Shewana3_2847 NC_008577.1 3408271 3408465 D KEGG: pha:PSHAa0536 hypothetical protein; hypothetical protein 3408271..3408465 Shewanella sp. ANA-3 4478722 YP_870481.1 CDS Shewana3_2848 NC_008577.1 3408620 3410317 D PFAM: Dual specificity protein phosphatase; diacylglycerol kinase, catalytic region; KEGG: pha:PSHAb0333 methylglyoxal synthase; hypothetical protein 3408620..3410317 Shewanella sp. ANA-3 4478723 YP_870482.1 CDS Shewana3_2849 NC_008577.1 3410403 3411812 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: vpa:VP0080 putative sigma-54 interacting response regulator transcription regulator protein; sigma-54 dependent trancsriptional regulator complement(3410403..3411812) Shewanella sp. ANA-3 4478724 YP_870483.1 CDS Shewana3_2850 NC_008577.1 3412066 3412542 D hypothetical protein 3412066..3412542 Shewanella sp. ANA-3 4478725 YP_870484.1 CDS Shewana3_2851 NC_008577.1 3412814 3413362 D PFAM: transport-associated; KEGG: pha:PSHAa0325 hypothetical protein; transport-associated 3412814..3413362 Shewanella sp. ANA-3 4478726 YP_870485.1 CDS Shewana3_2852 NC_008577.1 3413527 3413937 R KEGG: son:SO1590 hypothetical protein; hypothetical protein complement(3413527..3413937) Shewanella sp. ANA-3 4478727 YP_870486.1 CDS Shewana3_2853 NC_008577.1 3414062 3414871 R KEGG: son:SO1589 hypothetical protein; hypothetical protein complement(3414062..3414871) Shewanella sp. ANA-3 4478728 YP_870487.1 CDS Shewana3_2854 NC_008577.1 3415127 3415369 D KEGG: son:SO1588 hypothetical protein; hypothetical protein 3415127..3415369 Shewanella sp. ANA-3 4478729 YP_870488.1 CDS Shewana3_2855 NC_008577.1 3415366 3415866 R KEGG: son:SO1587 hypothetical protein; hypothetical protein complement(3415366..3415866) Shewanella sp. ANA-3 4478730 YP_870489.1 CDS Shewana3_2856 NC_008577.1 3415999 3416607 R PFAM: cyclic nucleotide-binding; KEGG: son:SO1586 hypothetical cyclic nucleotide-binding domain protein; cyclic nucleotide-binding protein complement(3415999..3416607) Shewanella sp. ANA-3 4478731 YP_870490.1 CDS Shewana3_2857 NC_008577.1 3416612 3417238 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: son:SO1585 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase complement(3416612..3417238) Shewanella sp. ANA-3 4478732 YP_870491.1 CDS Shewana3_2858 NC_008577.1 3417292 3418305 R PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: son:SO1583 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase complement(3417292..3418305) Shewanella sp. ANA-3 4478733 YP_870492.1 CDS Shewana3_2859 NC_008577.1 3418376 3418969 R PFAM: regulatory protein, MarR; KEGG: son:SO1582 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(3418376..3418969) Shewanella sp. ANA-3 4478734 YP_870493.1 CDS Shewana3_2860 NC_008577.1 3419079 3420275 D PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_1489 cyanate transporter, putative; major facilitator superfamily transporter 3419079..3420275 Shewanella sp. ANA-3 4478735 YP_870494.1 CDS Shewana3_2861 NC_008577.1 3420357 3420920 R PFAM: PhnA protein; KEGG: son:SO1581 PhnA protein; PhnA protein complement(3420357..3420920) Shewanella sp. ANA-3 4478736 YP_870495.1 CDS Shewana3_2862 NC_008577.1 3421055 3423268 R TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1580 TonB-dependent heme receptor; TonB-dependent heme/hemoglobin receptor family protein complement(3421055..3423268) Shewanella sp. ANA-3 4478737 YP_870496.1 CDS Shewana3_2863 NC_008577.1 3423499 3424206 D TIGRFAM: conserved hypothetical protein; KEGG: son:SO1579 hypothetical protein; hypothetical protein 3423499..3424206 Shewanella sp. ANA-3 4478738 YP_870497.1 CDS Shewana3_2864 NC_008577.1 3424269 3424880 R PFAM: regulatory protein, TetR; KEGG: son:SO1578 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3424269..3424880) Shewanella sp. ANA-3 4478739 YP_870498.1 CDS Shewana3_2865 NC_008577.1 3425036 3425662 D PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: son:SO1577 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 3425036..3425662 Shewanella sp. ANA-3 4478740 YP_870499.1 CDS Shewana3_2866 NC_008577.1 3425724 3426392 D PFAM: Glutathione S-transferase, N-terminal domain protein; Glutathione S-transferase, C-terminal domain protein; KEGG: son:SO1576 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 3425724..3426392 Shewanella sp. ANA-3 4478741 YP_870500.1 CDS Shewana3_2867 NC_008577.1 3426533 3427942 D PFAM: Fmu (Sun) domain protein; KEGG: son:SO1575 NOL1/NOP2/sun family putative RNA methylase; Fmu (Sun) domain-containing protein 3426533..3427942 Shewanella sp. ANA-3 4478742 YP_870501.1 CDS Shewana3_2868 NC_008577.1 3428491 3428655 D KEGG: son:SO1572 hypothetical protein; hypothetical protein 3428491..3428655 Shewanella sp. ANA-3 4478743 YP_870502.1 CDS Shewana3_2869 NC_008577.1 3428896 3432021 D KEGG: son:SO1571 hypothetical protein; hypothetical protein 3428896..3432021 Shewanella sp. ANA-3 4478744 YP_870503.1 CDS Shewana3_2870 NC_008577.1 3432126 3433793 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: son:SO1570 GGDEF domain protein; diguanylate cyclase complement(3432126..3433793) Shewanella sp. ANA-3 4478745 YP_870504.1 CDS Shewana3_2871 NC_008577.1 3433991 3434842 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO1569 integral membrane domain protein; hypothetical protein 3433991..3434842 Shewanella sp. ANA-3 4478746 YP_870505.1 CDS Shewana3_2872 NC_008577.1 3434896 3435435 R PFAM: YfaZ family protein; KEGG: son:SO1568 hypothetical protein; hypothetical protein complement(3434896..3435435) Shewanella sp. ANA-3 4478747 YP_870506.1 CDS Shewana3_2873 NC_008577.1 3435599 3436108 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1566 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(3435599..3436108) Shewanella sp. ANA-3 4478748 YP_870507.1 CDS Shewana3_2874 NC_008577.1 3436137 3437507 R PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: son:SO1565 magnesium transporter, putative; MgtE integral membrane protein complement(3436137..3437507) Shewanella sp. ANA-3 4478749 YP_870508.1 CDS Shewana3_2875 NC_008577.1 3437655 3438140 D PFAM: glutathione peroxidase; KEGG: son:SO1563 glutathione peroxidase; glutathione peroxidase 3437655..3438140 Shewanella sp. ANA-3 4478750 YP_870509.1 CDS Shewana3_2876 NC_008577.1 3438741 3440555 R PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: son:SO1561 peptidase, M1 family; response regulator receiver protein complement(3438741..3440555) Shewanella sp. ANA-3 4478751 YP_870510.1 CDS Shewana3_2877 NC_008577.1 3441048 3442019 R TIGRFAM: phosphate binding protein; KEGG: son:SO1560 phosphate-binding protein; phosphate binding protein complement(3441048..3442019) Shewanella sp. ANA-3 4478752 YP_870511.1 CDS Shewana3_2878 NC_008577.1 3442246 3443544 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: son:SO1559 phosphate regulon sensor protein PhoR; PAS/PAC sensor signal transduction histidine kinase complement(3442246..3443544) Shewanella sp. ANA-3 4478753 YP_870512.1 CDS Shewana3_2879 NC_008577.1 3443625 3444314 R TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO1558 phosphate regulon response regulator PhoB; two component transcriptional regulator complement(3443625..3444314) Shewanella sp. ANA-3 4478754 YP_870513.1 CDS Shewana3_2880 NC_008577.1 3444500 3445444 R PFAM: porin, Gram-negative type; KEGG: son:SO1557 outer membrane porin, putative; porin complement(3444500..3445444) Shewanella sp. ANA-3 4478755 YP_870514.1 CDS rdgC NC_008577.1 3445737 3446651 D Required for efficient pilin antigenic variation; recombination associated protein 3445737..3446651 Shewanella sp. ANA-3 4478756 YP_870515.1 CDS Shewana3_2882 NC_008577.1 3446868 3448679 R PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: cps:CPS_3534 putative peptidase, M61 family; peptidase M61 domain-containing protein complement(3446868..3448679) Shewanella sp. ANA-3 4478757 YP_870516.1 CDS Shewana3_2883 NC_008577.1 3448820 3450982 D PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO1552 TPR domain protein; hypothetical protein 3448820..3450982 Shewanella sp. ANA-3 4478758 YP_870517.1 CDS Shewana3_2884 NC_008577.1 3451132 3452688 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO1551 GGDEF domain protein; diguanylate cyclase 3451132..3452688 Shewanella sp. ANA-3 4478759 YP_870518.1 CDS Shewana3_2885 NC_008577.1 3452745 3454100 D PFAM: conserved hypothetical protein 730; KEGG: son:SO1550 hypothetical protein; hypothetical protein 3452745..3454100 Shewanella sp. ANA-3 4478760 YP_870519.1 CDS xni NC_008577.1 3454115 3454897 D has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3454115..3454897 Shewanella sp. ANA-3 4478761 YP_870520.1 CDS Shewana3_2887 NC_008577.1 3455008 3455436 D KEGG: son:SO1548 hypothetical protein; hypothetical protein 3455008..3455436 Shewanella sp. ANA-3 4478762 YP_870521.1 CDS Shewana3_2888 NC_008577.1 3456203 3456859 D hypothetical protein 3456203..3456859 Shewanella sp. ANA-3 4478763 YP_870522.1 CDS Shewana3_2889 NC_008577.1 3457088 3459904 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO1539 hypothetical protein; peptidase S9 prolyl oligopeptidase complement(3457088..3459904) Shewanella sp. ANA-3 4478764 YP_870523.1 CDS Shewana3_2890 NC_008577.1 3460159 3461169 D catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 3460159..3461169 Shewanella sp. ANA-3 4478765 YP_870524.1 CDS Shewana3_2891 NC_008577.1 3461304 3462389 R KEGG: son:SO1536 hypothetical protein; putative RNA 2'-O-ribose methyltransferase complement(3461304..3462389) Shewanella sp. ANA-3 4478766 YP_870525.1 CDS Shewana3_2892 NC_008577.1 3462543 3462935 R PFAM: protein of unknown function DUF423; KEGG: son:SO1535 hypothetical protein; hypothetical protein complement(3462543..3462935) Shewanella sp. ANA-3 4478767 YP_870526.1 CDS Shewana3_2893 NC_008577.1 3463023 3463694 R KEGG: son:SO1534 hypothetical protein; hypothetical protein complement(3463023..3463694) Shewanella sp. ANA-3 4479425 YP_870527.1 CDS Shewana3_2894 NC_008577.1 3463675 3464586 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(3463675..3464586) Shewanella sp. ANA-3 4479426 YP_870528.1 CDS Shewana3_2895 NC_008577.1 3464763 3464996 D KEGG: son:SO1532 hypothetical protein; hypothetical protein 3464763..3464996 Shewanella sp. ANA-3 4479427 YP_870529.1 CDS Shewana3_2896 NC_008577.1 3465148 3466602 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(3465148..3466602) Shewanella sp. ANA-3 4479428 YP_870530.1 CDS motB NC_008577.1 3466819 3467739 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB complement(3466819..3467739) Shewanella sp. ANA-3 4479429 YP_870531.1 CDS Shewana3_2898 NC_008577.1 3467743 3468510 R Homologous to MotA in E. coli and Salmonella. With PomB forms the ion channels that couple flagellar rotation to sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein PomA complement(3467743..3468510) Shewanella sp. ANA-3 4479430 YP_870532.1 CDS Shewana3_2899 NC_008577.1 3468825 3469064 D TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: ppr:PBPRA0807 putative exodeoxyribonuclease, small subunit; exodeoxyribonuclease VII small subunit 3468825..3469064 Shewanella sp. ANA-3 4479431 YP_870533.1 CDS Shewana3_2900 NC_008577.1 3469067 3469948 D PFAM: Polyprenyl synthetase; KEGG: son:SO1526 geranyltranstransferase; farnesyl-diphosphate synthase 3469067..3469948 Shewanella sp. ANA-3 4479432 YP_870534.1 CDS Shewana3_2901 NC_008577.1 3469970 3471838 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 3469970..3471838 Shewanella sp. ANA-3 4479433 YP_870535.1 CDS Shewana3_2902 NC_008577.1 3471986 3472606 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(3471986..3472606) Shewanella sp. ANA-3 4479434 YP_870536.1 CDS ppnK NC_008577.1 3472655 3473584 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 3472655..3473584 Shewanella sp. ANA-3 4479435 YP_870537.1 CDS Shewana3_2904 NC_008577.1 3474335 3475978 D PFAM: L-lactate permease; KEGG: son:SO1522 L-lactate permease, putative; L-lactate permease 3474335..3475978 Shewanella sp. ANA-3 4479031 YP_870538.1 CDS Shewana3_2905 NC_008577.1 3476042 3478846 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: son:SO1521 iron-sulfur cluster-binding protein; FAD linked oxidase domain-containing protein 3476042..3478846 Shewanella sp. ANA-3 4479032 YP_870539.1 CDS Shewana3_2906 NC_008577.1 3479116 3479892 D PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: son:SO1520 hypothetical protein; hypothetical protein 3479116..3479892 Shewanella sp. ANA-3 4479033 YP_870540.1 CDS Shewana3_2907 NC_008577.1 3479903 3481297 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO1519 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 3479903..3481297 Shewanella sp. ANA-3 4479034 YP_870541.1 CDS Shewana3_2908 NC_008577.1 3481299 3481868 D PFAM: protein of unknown function DUF162; KEGG: son:SO1518 hypothetical protein; hypothetical protein 3481299..3481868 Shewanella sp. ANA-3 4479035 YP_870542.1 CDS Shewana3_2909 NC_008577.1 3482337 3483914 R hypothetical protein complement(3482337..3483914) Shewanella sp. ANA-3 4479036 YP_870543.1 CDS Shewana3_2910 NC_008577.1 3484779 3485888 D PFAM: protein of unknown function UPF0118; KEGG: mca:MCA0120 hypothetical protein; hypothetical protein 3484779..3485888 Shewanella sp. ANA-3 4479037 YP_870544.1 CDS Shewana3_2912 NC_008577.1 3487437 3488531 D PFAM: secretion protein HlyD family protein; KEGG: pfo:Pfl_2138 secretion protein HlyD; secretion protein HlyD family protein 3487437..3488531 Shewanella sp. ANA-3 4479039 YP_870545.1 CDS Shewana3_2913 NC_008577.1 3488666 3489565 D KEGG: pfo:Pfl_2137 hypothetical protein; hypothetical protein 3488666..3489565 Shewanella sp. ANA-3 4479040 YP_870546.1 CDS Shewana3_2914 NC_008577.1 3489567 3489977 D PFAM: Ion transport 2 domain protein; KEGG: reu:Reut_A1737 hypothetical protein; Ion transport 2 domain-containing protein 3489567..3489977 Shewanella sp. ANA-3 4479041 YP_870547.1 CDS Shewana3_2915 NC_008577.1 3490175 3491653 D PFAM: phage integrase family protein; KEGG: vpa:VPA1270 hypothetical protein; phage integrase family protein 3490175..3491653 Shewanella sp. ANA-3 4479042 YP_870548.1 CDS Shewana3_2916 NC_008577.1 3491653 3494322 D KEGG: vpa:VPA1269 hypothetical protein; hypothetical protein 3491653..3494322 Shewanella sp. ANA-3 4479043 YP_870549.1 CDS Shewana3_2917 NC_008577.1 3494322 3494999 D KEGG: vpa:VPA1268 hypothetical protein; hypothetical protein 3494322..3494999 Shewanella sp. ANA-3 4479044 YP_870550.1 CDS Shewana3_2918 NC_008577.1 3494999 3495436 D KEGG: vpa:VPA1267 hypothetical protein; hypothetical protein 3494999..3495436 Shewanella sp. ANA-3 4479045 YP_870551.1 CDS Shewana3_2919 NC_008577.1 3495433 3497598 D SMART: AAA ATPase; KEGG: vpa:VPA1266 putative ATP-dependent exoDNAse (exonuclease V), alpha subunit; DNA helicase/exodeoxyribonuclease V subunit alpha 3495433..3497598 Shewanella sp. ANA-3 4479046 YP_870552.1 CDS Shewana3_2920 NC_008577.1 3498045 3499076 D KEGG: ava:Ava_4263 hypothetical protein; hypothetical protein 3498045..3499076 Shewanella sp. ANA-3 4479047 YP_870553.1 CDS Shewana3_2921 NC_008577.1 3499176 3499628 D hypothetical protein 3499176..3499628 Shewanella sp. ANA-3 4478925 YP_870554.1 CDS Shewana3_2922 NC_008577.1 3500984 3502495 R KEGG: son:SO1507 hypothetical protein; hypothetical protein complement(3500984..3502495) Shewanella sp. ANA-3 4478926 YP_870555.1 CDS Shewana3_2923 NC_008577.1 3502723 3504075 R PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO1506 MATE efflux family protein; multi anti extrusion protein MatE complement(3502723..3504075) Shewanella sp. ANA-3 4478927 YP_870556.1 CDS Shewana3_2924 NC_008577.1 3504516 3506060 D PFAM: major facilitator superfamily MFS_1; KEGG: son:SO1505 transporter, putative; major facilitator superfamily transporter 3504516..3506060 Shewanella sp. ANA-3 4478928 YP_870557.1 CDS Shewana3_2925 NC_008577.1 3506206 3506727 R KEGG: son:SO1504 hypothetical protein; hypothetical protein complement(3506206..3506727) Shewanella sp. ANA-3 4478929 YP_870558.1 CDS Shewana3_2926 NC_008577.1 3507066 3507842 D SMART: extracellular solute-binding protein, family 3; KEGG: son:SO1503 ABC transporter, periplasmic substrate-binding protein, putative; extracellular solute-binding protein 3507066..3507842 Shewanella sp. ANA-3 4478930 YP_870559.1 CDS Shewana3_2927 NC_008577.1 3507880 3508992 R PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: son:SO1502 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein, P47K complement(3507880..3508992) Shewanella sp. ANA-3 4478931 YP_870560.1 CDS Shewana3_2928 NC_008577.1 3509101 3510564 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO1501 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase complement(3509101..3510564) Shewanella sp. ANA-3 4478932 YP_870561.1 CDS Shewana3_2929 NC_008577.1 3510732 3513761 R KEGG: son:SO1500 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; 5TM Receptors of the LytS-YhcK type, transmembrane region; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(3510732..3513761) Shewanella sp. ANA-3 4478933 YP_870562.1 CDS Shewana3_2930 NC_008577.1 3513871 3515460 R PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: son:SO1499 glycogen synthase; starch synthase catalytic subunit complement(3513871..3515460) Shewanella sp. ANA-3 4478934 YP_870563.1 CDS glgC NC_008577.1 3515528 3516790 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(3515528..3516790) Shewanella sp. ANA-3 4478935 YP_870564.1 CDS Shewana3_2932 NC_008577.1 3516909 3519422 R TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; KEGG: son:SO1496 glycogen phosphorylase family protein; glycogen/starch/alpha-glucan phosphorylase complement(3516909..3519422) Shewanella sp. ANA-3 4478936 YP_870565.1 CDS Shewana3_2933 NC_008577.1 3519425 3521683 R KEGG: son:SO1495 glycogen operon protein; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX complement(3519425..3521683) Shewanella sp. ANA-3 4478937 YP_870566.1 CDS Shewana3_2934 NC_008577.1 3521680 3523917 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(3521680..3523917) Shewanella sp. ANA-3 4478938 YP_870567.1 CDS Shewana3_2935 NC_008577.1 3523935 3526340 R TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; KEGG: son:SO1493 4-alpha-glucanotransferase; 4-alpha-glucanotransferase complement(3523935..3526340) Shewanella sp. ANA-3 4478939 YP_870568.1 CDS Shewana3_2936 NC_008577.1 3526850 3527485 D PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: son:SO1492 peptidyl-prolyl cis-trans isomerase, cyclophilin family; cyclophilin type peptidyl-prolyl cis-trans isomerase 3526850..3527485 Shewanella sp. ANA-3 4478940 YP_870569.1 CDS Shewana3_2937 NC_008577.1 3527544 3528041 R PFAM: regulatory protein, MarR; KEGG: cps:CPS_1337 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(3527544..3528041) Shewanella sp. ANA-3 4478941 YP_870570.1 CDS Shewana3_2938 NC_008577.1 3528348 3529496 D PFAM: iron-containing alcohol dehydrogenase; KEGG: son:SO1490 alcohol dehydrogenase II; iron-containing alcohol dehydrogenase 3528348..3529496 Shewanella sp. ANA-3 4478942 YP_870571.1 CDS Shewana3_2939 NC_008577.1 3530192 3530566 D KEGG: son:SO1489 hypothetical protein; hypothetical protein 3530192..3530566 Shewanella sp. ANA-3 4478146 YP_870572.1 CDS Shewana3_2940 NC_008577.1 3530884 3531129 D KEGG: son:SO1487 hypothetical protein; hypothetical protein 3530884..3531129 Shewanella sp. ANA-3 4478147 YP_870573.1 CDS Shewana3_2941 NC_008577.1 3531167 3531535 R PFAM: thioesterase superfamily protein; KEGG: son:SO1486 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein complement(3531167..3531535) Shewanella sp. ANA-3 4478148 YP_870574.1 CDS Shewana3_2942 NC_008577.1 3531910 3533232 R TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: son:SO1484 isocitrate lyase; isocitrate lyase complement(3531910..3533232) Shewanella sp. ANA-3 4478149 YP_870575.1 CDS Shewana3_2943 NC_008577.1 3533376 3535025 R Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase complement(3533376..3535025) Shewanella sp. ANA-3 4478150 YP_870576.1 CDS Shewana3_2944 NC_008577.1 3535861 3538332 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1482 TonB-dependent receptor, putative; TonB-dependent receptor 3535861..3538332 Shewanella sp. ANA-3 4478151 YP_870577.1 CDS Shewana3_2945 NC_008577.1 3538401 3540170 R TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: son:SO1481 glutathione-regulated potassium-efflux system protein; potassium efflux system protein complement(3538401..3540170) Shewanella sp. ANA-3 4478152 YP_870578.1 CDS Shewana3_2946 NC_008577.1 3540394 3542121 R KEGG: son:SO1480 GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: Tetratricopeptide domain protein; diguanylate cyclase complement(3540394..3542121) Shewanella sp. ANA-3 4478153 YP_870579.1 CDS Shewana3_2947 NC_008577.1 3542185 3542397 R KEGG: son:SO1479 hypothetical protein; hypothetical protein complement(3542185..3542397) Shewanella sp. ANA-3 4478154 YP_870580.1 CDS Shewana3_2948 NC_008577.1 3542442 3543233 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO1478 methylase, putative; uroporphyrin-III C/tetrapyrrole methyltransferase complement(3542442..3543233) Shewanella sp. ANA-3 4478155 YP_870581.1 CDS Shewana3_2949 NC_008577.1 3543604 3544128 D PFAM: SmpA/OmlA domain protein; KEGG: son:SO1476 small protein A; SmpA/OmlA domain-containing protein 3543604..3544128 Shewanella sp. ANA-3 4478156 YP_870582.1 CDS Shewana3_2950 NC_008577.1 3544204 3544539 R PFAM: protein of unknown function UPF0125; KEGG: son:SO1475 hypothetical protein; hypothetical protein complement(3544204..3544539) Shewanella sp. ANA-3 4478157 YP_870583.1 CDS Shewana3_2951 NC_008577.1 3544529 3544966 R PFAM: cyclase/dehydrase; KEGG: son:SO1474 hypothetical protein; cyclase/dehydrase complement(3544529..3544966) Shewanella sp. ANA-3 4478158 YP_870584.1 CDS smpB NC_008577.1 3545220 3545711 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 3545220..3545711 Shewanella sp. ANA-3 4478159 YP_870585.1 CDS Shewana3_2953 NC_008577.1 3546379 3547605 D PFAM: phage integrase family protein; KEGG: son:SO1471 site-specific recombinase, phage integrase family; phage integrase family protein 3546379..3547605 Shewanella sp. ANA-3 4478161 YP_870586.1 CDS Shewana3_2954 NC_008577.1 3547630 3548439 D hypothetical protein 3547630..3548439 Shewanella sp. ANA-3 4478162 YP_870587.1 CDS Shewana3_2955 NC_008577.1 3549000 3549626 D hypothetical protein 3549000..3549626 Shewanella sp. ANA-3 4478163 YP_870588.1 CDS Shewana3_2956 NC_008577.1 3549897 3550760 R hypothetical protein complement(3549897..3550760) Shewanella sp. ANA-3 4478164 YP_870589.1 CDS Shewana3_2957 NC_008577.1 3550768 3551529 R PFAM: HNH endonuclease; KEGG: mca:MCA0503 hypothetical protein; HNH endonuclease complement(3550768..3551529) Shewanella sp. ANA-3 4478165 YP_870590.1 CDS Shewana3_2958 NC_008577.1 3551574 3552383 R KEGG: sil:SPOA0125 hypothetical protein; hypothetical protein complement(3551574..3552383) Shewanella sp. ANA-3 4478166 YP_870591.1 CDS Shewana3_2959 NC_008577.1 3552383 3553984 R KEGG: dde:Dde_2495 hypothetical protein; hypothetical protein complement(3552383..3553984) Shewanella sp. ANA-3 4478167 YP_870592.1 CDS Shewana3_2960 NC_008577.1 3554005 3555768 R PFAM: restriction modification system DNA specificity domain; KEGG: son:SO4264 type I restriction-modification system, S subunit; restriction modification system DNA specificity subunit complement(3554005..3555768) Shewanella sp. ANA-3 4478168 YP_870593.1 CDS Shewana3_2961 NC_008577.1 3555768 3557360 R PFAM: N-6 DNA methylase; KEGG: son:SO4265 type I restriction-modification system, M subunit; N-6 DNA methylase complement(3555768..3557360) Shewanella sp. ANA-3 4478169 YP_870594.1 CDS Shewana3_2962 NC_008577.1 3557387 3558514 R PFAM: filamentation induced by cAMP protein Fic; KEGG: plu:plu4880 hypothetical protein; filamentation induced by cAMP protein fic complement(3557387..3558514) Shewanella sp. ANA-3 4478170 YP_870595.1 CDS hsdR NC_008577.1 3558640 3562143 R restriction endonuclease; the EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'; subunit R is required for both nuclease and ATPase activities; type I restriction enzyme EcoKI subunit R complement(3558640..3562143) Shewanella sp. ANA-3 4478171 YP_870596.1 CDS Shewana3_2964 NC_008577.1 3562388 3563338 D hypothetical protein 3562388..3563338 Shewanella sp. ANA-3 4478172 YP_870597.1 CDS Shewana3_2965 NC_008577.1 3563982 3565682 R KEGG: son:SO1425 hypothetical protein; hypothetical protein complement(3563982..3565682) Shewanella sp. ANA-3 4478173 YP_870598.1 CDS Shewana3_2967 NC_008577.1 3568695 3568994 R PFAM: Heavy metal transport/detoxification protein; KEGG: son:SO1407 mercuric transport periplasmic protein MerP, putative; heavy metal transport/detoxification protein complement(3568695..3568994) Shewanella sp. ANA-3 4478175 YP_870599.1 CDS Shewana3_2968 NC_008577.1 3568991 3569353 R KEGG: son:SO1406 mercuric transport protein MerT, putative; mercuric transport protein MerT complement(3568991..3569353) Shewanella sp. ANA-3 4478176 YP_870600.1 CDS Shewana3_2969 NC_008577.1 3569325 3570464 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: transglutaminase domain protein; KEGG: son:SO1405 transglutaminase family protein; transglutaminase domain-containing protein complement(3569325..3570464) Shewanella sp. ANA-3 4478177 YP_870601.1 CDS Shewana3_2970 NC_008577.1 3570711 3571982 R KEGG: vpa:VP2175 putative HAAAP family transport protein; HAAAP family transport protein complement(3570711..3571982) Shewanella sp. ANA-3 4478178 YP_870602.1 CDS Shewana3_2971 NC_008577.1 3572238 3572621 D TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: son:SO1404 endoribonuclease L-PSP, putative; putative endoribonuclease L-PSP 3572238..3572621 Shewanella sp. ANA-3 4478179 YP_870603.1 CDS Shewana3_2972 NC_008577.1 3572642 3573916 D PFAM: protein of unknown function DUF1063; KEGG: son:SO1403 hypothetical protein; hypothetical protein 3572642..3573916 Shewanella sp. ANA-3 4478180 YP_870604.1 CDS Shewana3_2973 NC_008577.1 3573958 3574638 D PFAM: YheO domain protein; KEGG: son:SO1402 hypothetical protein; YheO domain-containing protein 3573958..3574638 Shewanella sp. ANA-3 4478516 YP_870605.1 CDS Shewana3_2974 NC_008577.1 3574716 3576446 R KEGG: son:SO1401 hypothetical protein; hypothetical protein complement(3574716..3576446) Shewanella sp. ANA-3 4478517 YP_870606.1 CDS Shewana3_2975 NC_008577.1 3576515 3577429 R PFAM: protein of unknown function DUF368; KEGG: son:SO1400 hypothetical protein; hypothetical protein complement(3576515..3577429) Shewanella sp. ANA-3 4478518 YP_870607.1 CDS Shewana3_2976 NC_008577.1 3577667 3578161 D KEGG: cps:CPS_4932 hypothetical protein; hypothetical protein 3577667..3578161 Shewanella sp. ANA-3 4478519 YP_870608.1 CDS Shewana3_2977 NC_008577.1 3578276 3578713 D PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: son:SO1397 cytosine deaminase; zinc-binding CMP/dCMP deaminase 3578276..3578713 Shewanella sp. ANA-3 4478520 YP_870609.1 CDS Shewana3_2978 NC_008577.1 3579205 3580449 D PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: son:SO1396 hypothetical protein; hypothetical protein 3579205..3580449 Shewanella sp. ANA-3 4478521 YP_870610.1 CDS Shewana3_2979 NC_008577.1 3580427 3580945 D PFAM: protein of unknown function DUF1294; KEGG: son:SO1395 membrane protein,putative; hypothetical protein 3580427..3580945 Shewanella sp. ANA-3 4478522 YP_870611.1 CDS Shewana3_2980 NC_008577.1 3580954 3581562 R PFAM: regulatory protein, TetR; KEGG: son:SO1393 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3580954..3581562) Shewanella sp. ANA-3 4478523 YP_870612.1 CDS Shewana3_2981 NC_008577.1 3581814 3582293 D PFAM: HPP family protein; KEGG: son:SO1392 hypothetical protein; HPP family protein 3581814..3582293 Shewanella sp. ANA-3 4478524 YP_870613.1 CDS Shewana3_2982 NC_008577.1 3582424 3583752 R PFAM: short chain fatty acid transporter; KEGG: son:SO1391 short-chain fatty acids transporter; short chain fatty acid transporter complement(3582424..3583752) Shewanella sp. ANA-3 4478525 YP_870614.1 CDS Shewana3_2983 NC_008577.1 3583973 3584443 D PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1390 peptidyl-prolyl cis-trans isomerase, FKBP-type; peptidylprolyl isomerase, FKBP-type 3583973..3584443 Shewanella sp. ANA-3 4478526 YP_870615.1 CDS Shewana3_2984 NC_008577.1 3584514 3587120 R PFAM: PKD domain containing protein; glycoside hydrolase, family 18; Carbohydrate-binding family V/XII; Chitinase A N-terminal domain protein; SMART: chitinase II; KEGG: vfi:VF1598 exochitinase; glycosyl hydrolase family chitinase complement(3584514..3587120) Shewanella sp. ANA-3 4478527 YP_870616.1 CDS Shewana3_2985 NC_008577.1 3587809 3588600 R PFAM: ROK family protein; KEGG: son:SO1389 ROK family protein; ROK family protein complement(3587809..3588600) Shewanella sp. ANA-3 4478528 YP_870617.1 CDS Shewana3_2986 NC_008577.1 3588962 3590776 D PFAM: peptidase M24; KEGG: son:SO1388 aminopeptidase P, putative; peptidase M24 3588962..3590776 Shewanella sp. ANA-3 4478529 YP_870618.1 CDS Shewana3_2987 NC_008577.1 3591250 3592818 D KEGG: son:SO1385 methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 3591250..3592818 Shewanella sp. ANA-3 4478530 YP_870619.1 CDS Shewana3_2988 NC_008577.1 3593167 3594468 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO1383 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 3593167..3594468 Shewanella sp. ANA-3 4478531 YP_870620.1 CDS Shewana3_2989 NC_008577.1 3594549 3595844 R PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: vpa:VPA0106 hypothetical protein; hypothetical protein complement(3594549..3595844) Shewanella sp. ANA-3 4478532 YP_870621.1 CDS Shewana3_2990 NC_008577.1 3596157 3597044 R KEGG: son:SO1382 hypothetical protein; hypothetical protein complement(3596157..3597044) Shewanella sp. ANA-3 4478533 YP_870622.1 CDS Shewana3_2991 NC_008577.1 3597334 3597981 D PFAM: alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen; Redoxin domain protein; KEGG: son:SO1381 hypothetical protein; redoxin domain-containing protein 3597334..3597981 Shewanella sp. ANA-3 4478534 YP_870623.1 CDS Shewana3_2992 NC_008577.1 3598110 3598745 D KEGG: son:SO1380 hypothetical protein; hypothetical protein 3598110..3598745 Shewanella sp. ANA-3 4478535 YP_870624.1 CDS Shewana3_2993 NC_008577.1 3598864 3599613 D KEGG: pfl:PFL_5800 periplasmic binding protein, putative; amino acid ABC transporter periplasmic protein 3598864..3599613 Shewanella sp. ANA-3 4478536 YP_870625.1 CDS Shewana3_2994 NC_008577.1 3599713 3600021 R KEGG: son:SO1379 hypothetical protein; hypothetical protein complement(3599713..3600021) Shewanella sp. ANA-3 4478537 YP_870626.1 CDS Shewana3_2995 NC_008577.1 3600412 3600972 R TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: son:SO1378 ThiJ/PfpI family protein; PfpI family intracellular peptidase complement(3600412..3600972) Shewanella sp. ANA-3 4478538 YP_870627.1 CDS Shewana3_2996 NC_008577.1 3601129 3602907 R PFAM: band 7 protein; KEGG: son:SO1377 hypothetical protein; hypothetical protein complement(3601129..3602907) Shewanella sp. ANA-3 4478539 YP_870628.1 CDS Shewana3_2997 NC_008577.1 3602941 3603576 R PFAM: protein of unknown function DUF1449; KEGG: son:SO1376 hypothetical protein; hypothetical protein complement(3602941..3603576) Shewanella sp. ANA-3 4478540 YP_870629.1 CDS Shewana3_2998 NC_008577.1 3603699 3604265 R KEGG: eli:ELI_10435 hypothetical protein; hypothetical protein complement(3603699..3604265) Shewanella sp. ANA-3 4478541 YP_870630.1 CDS Shewana3_2999 NC_008577.1 3604335 3605840 D PFAM: peptidase M32, carboxypeptidase Taq metallopeptidase; KEGG: son:SO1375 carboxypeptidase; peptidase M32, carboxypeptidase Taq metallopeptidase 3604335..3605840 Shewanella sp. ANA-3 4478542 YP_870631.1 CDS Shewana3_3000 NC_008577.1 3605960 3606454 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO1374 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3605960..3606454 Shewanella sp. ANA-3 4478543 YP_870632.1 CDS Shewana3_3001 NC_008577.1 3606451 3606804 D PFAM: protein of unknown function DUF486; KEGG: son:SO1373 hypothetical protein; hypothetical protein 3606451..3606804 Shewanella sp. ANA-3 4478544 YP_870633.1 CDS Shewana3_3002 NC_008577.1 3606842 3607099 D KEGG: son:SO1372 hypothetical protein; hypothetical protein 3606842..3607099 Shewanella sp. ANA-3 4478545 YP_870634.1 CDS Shewana3_3003 NC_008577.1 3607139 3607648 D PFAM: RDD domain containing protein; KEGG: son:SO1371 hypothetical protein; RDD domain-containing protein 3607139..3607648 Shewanella sp. ANA-3 4478546 YP_870635.1 CDS Shewana3_3004 NC_008577.1 3607755 3608813 R PFAM: permease YjgP/YjgQ family protein; KEGG: son:SO1370 hypothetical protein; YjgP/YjgQ family permease complement(3607755..3608813) Shewanella sp. ANA-3 4478547 YP_870636.1 CDS Shewana3_3005 NC_008577.1 3608810 3609922 R PFAM: permease YjgP/YjgQ family protein; KEGG: son:SO1369 hypothetical protein; YjgP/YjgQ family permease complement(3608810..3609922) Shewanella sp. ANA-3 4478548 YP_870637.1 CDS Shewana3_3006 NC_008577.1 3610178 3611686 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 3610178..3611686 Shewanella sp. ANA-3 4478549 YP_870638.1 CDS Shewana3_3007 NC_008577.1 3612019 3614022 D TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; KEGG: son:SO1367 prephenate dehydratase/chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase; chorismate mutase / prephenate dehydratase 3612019..3614022 Shewanella sp. ANA-3 4478550 YP_870639.1 CDS Shewana3_3008 NC_008577.1 3614307 3615476 R PFAM: sodium/hydrogen exchanger; KEGG: son:SO1366 sodium/hydrogen exchanger family protein; methyl-accepting chemotaxis sensory transducer complement(3614307..3615476) Shewanella sp. ANA-3 4478551 YP_870640.1 CDS Shewana3_3009 NC_008577.1 3615522 3615857 R KEGG: son:SO1365 hypothetical protein; hypothetical protein complement(3615522..3615857) Shewanella sp. ANA-3 4478552 YP_870641.1 CDS Shewana3_3010 NC_008577.1 3616021 3617163 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: son:SO1364 iron-sulfur cluster-binding protein; oxidoreductase FAD-binding subunit complement(3616021..3617163) Shewanella sp. ANA-3 4478553 YP_870642.1 CDS Shewana3_3011 NC_008577.1 3617215 3618879 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(3617215..3618879) Shewanella sp. ANA-3 4478554 YP_870643.1 CDS tyrA NC_008577.1 3619096 3620235 R catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase complement(3619096..3620235) Shewanella sp. ANA-3 4478555 YP_870644.1 CDS Shewana3_3013 NC_008577.1 3620298 3621389 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(3620298..3621389) Shewanella sp. ANA-3 4478556 YP_870645.1 CDS rplS NC_008577.1 3621687 3622040 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(3621687..3622040) Shewanella sp. ANA-3 4478557 YP_870646.1 CDS trmD NC_008577.1 3622075 3622821 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(3622075..3622821) Shewanella sp. ANA-3 4478558 YP_870647.1 CDS rimM NC_008577.1 3622837 3623367 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(3622837..3623367) Shewanella sp. ANA-3 4478559 YP_870648.1 CDS rpsP NC_008577.1 3623388 3623636 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(3623388..3623636) Shewanella sp. ANA-3 4478560 YP_870649.1 CDS Shewana3_3018 NC_008577.1 3623855 3625228 R with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein complement(3623855..3625228) Shewanella sp. ANA-3 4478561 YP_870650.1 CDS Shewana3_3019 NC_008577.1 3625517 3626305 D PFAM: cytochrome c assembly protein; KEGG: son:SO1355 hypothetical protein; cytochrome c assembly protein 3625517..3626305 Shewanella sp. ANA-3 4478562 YP_870651.1 CDS Shewana3_3020 NC_008577.1 3626407 3627678 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: son:SO1354 hemolysin protein, putative; hypothetical protein 3626407..3627678 Shewanella sp. ANA-3 4478563 YP_870652.1 CDS Shewana3_3021 NC_008577.1 3627744 3628280 R PFAM: protein of unknown function DUF962; KEGG: son:SO1353 hypothetical protein; hypothetical protein complement(3627744..3628280) Shewanella sp. ANA-3 4478564 YP_870653.1 CDS acpS NC_008577.1 3628451 3628834 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(3628451..3628834) Shewanella sp. ANA-3 4478565 YP_870654.1 CDS Shewana3_3023 NC_008577.1 3628834 3629571 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(3628834..3629571) Shewanella sp. ANA-3 4478566 YP_870655.1 CDS Shewana3_3024 NC_008577.1 3629661 3630362 R TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: son:SO1350 DNA repair protein RecO; DNA repair protein RecO complement(3629661..3630362) Shewanella sp. ANA-3 4478567 YP_870656.1 CDS era NC_008577.1 3630412 3631431 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(3630412..3631431) Shewanella sp. ANA-3 4478568 YP_870657.1 CDS rnc NC_008577.1 3631428 3632108 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(3631428..3632108) Shewanella sp. ANA-3 4478569 YP_870658.1 CDS Shewana3_3027 NC_008577.1 3632110 3633027 R TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: son:SO1347 signal peptidase I; signal peptidase I complement(3632110..3633027) Shewanella sp. ANA-3 4478570 YP_870659.1 CDS Shewana3_3028 NC_008577.1 3633207 3634997 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(3633207..3634997) Shewanella sp. ANA-3 4478571 YP_870660.1 CDS Shewana3_3029 NC_008577.1 3635165 3635638 R PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: son:SO1345 sigma-E factor regulatory protein RseC; positive regulator of sigma(E), RseC/MucC complement(3635165..3635638) Shewanella sp. ANA-3 4478572 YP_870661.1 CDS Shewana3_3030 NC_008577.1 3635650 3636582 R PFAM: MucB/RseB family protein; KEGG: son:SO1344 sigma-E factor regulatory protein RseB; sigma E regulatory protein MucB/RseB complement(3635650..3636582) Shewanella sp. ANA-3 4478573 YP_870662.1 CDS Shewana3_3031 NC_008577.1 3636595 3637218 R KEGG: son:SO1343 sigma-E factor negative regulatory protein; anti sigma-E protein, RseA complement(3636595..3637218) Shewanella sp. ANA-3 4478574 YP_870663.1 CDS Shewana3_3032 NC_008577.1 3637245 3637823 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(3637245..3637823) Shewanella sp. ANA-3 4478575 YP_870664.1 CDS Shewana3_3033 NC_008577.1 3638013 3639626 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 3638013..3639626 Shewanella sp. ANA-3 4478576 YP_870665.1 CDS Shewana3_3034 NC_008577.1 3639717 3640157 R KEGG: son:SO1340 hypothetical protein; hypothetical protein complement(3639717..3640157) Shewanella sp. ANA-3 4478577 YP_870666.1 CDS Shewana3_3035 NC_008577.1 3640138 3640377 R PFAM: protein of unknown function DUF339; KEGG: son:SO1339 hypothetical protein; hypothetical protein complement(3640138..3640377) Shewanella sp. ANA-3 4478578 YP_870667.1 CDS nhaR NC_008577.1 3640469 3641377 R Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR complement(3640469..3641377) Shewanella sp. ANA-3 4478579 YP_870668.1 CDS Shewana3_3037 NC_008577.1 3641473 3641859 R KEGG: son:SO1337 hypothetical protein; hypothetical protein complement(3641473..3641859) Shewanella sp. ANA-3 4478580 YP_870669.1 CDS nhaA NC_008577.1 3641862 3643031 R exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter complement(3641862..3643031) Shewanella sp. ANA-3 4478581 YP_870670.1 CDS thyA NC_008577.1 3643150 3643944 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(3643150..3643944) Shewanella sp. ANA-3 4478582 YP_870671.1 CDS Shewana3_3040 NC_008577.1 3643944 3644750 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(3643944..3644750) Shewanella sp. ANA-3 4478583 YP_870672.1 CDS Shewana3_3041 NC_008577.1 3644796 3645596 R PFAM: protein of unknown function DUF81; KEGG: son:SO1333 hypothetical protein; hypothetical protein complement(3644796..3645596) Shewanella sp. ANA-3 4478584 YP_870673.1 CDS Shewana3_3042 NC_008577.1 3645655 3647889 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: son:SO1332 phosphoenolpyruvate-protein phosphotransferase PtsP; phosphoenolpyruvate-protein phosphotransferase PtsP complement(3645655..3647889) Shewanella sp. ANA-3 4478585 YP_870674.1 CDS Shewana3_3043 NC_008577.1 3647913 3648437 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(3647913..3648437) Shewanella sp. ANA-3 4478306 YP_870675.1 CDS Shewana3_3044 NC_008577.1 3649129 3649800 D MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3649129..3649800 Shewanella sp. ANA-3 4478307 YP_870676.1 CDS Shewana3_3045 NC_008577.1 3649984 3650991 D KEGG: son:SO1329 adenylate cyclase-related protein; adenylate cyclase-like protein 3649984..3650991 Shewanella sp. ANA-3 4478308 YP_870677.1 CDS Shewana3_3046 NC_008577.1 3651019 3651930 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO1328 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3651019..3651930) Shewanella sp. ANA-3 4478309 YP_870678.1 CDS Shewana3_3047 NC_008577.1 3652149 3652514 R PFAM: Hpt domain protein; KEGG: son:SO1327 sensor histidine kinase-related protein; Hpt protein complement(3652149..3652514) Shewanella sp. ANA-3 4478310 YP_870679.1 CDS Shewana3_3048 NC_008577.1 3652700 3653629 R KEGG: son:SO1326 hypothetical protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; putative radical SAM protein complement(3652700..3653629) Shewanella sp. ANA-3 4478311 YP_870680.1 CDS gltB NC_008577.1 3654217 3658665 D catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 3654217..3658665 Shewanella sp. ANA-3 4478313 YP_870681.1 CDS gltD NC_008577.1 3658672 3660078 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3658672..3660078 Shewanella sp. ANA-3 4478314 YP_870682.1 CDS Shewana3_3052 NC_008577.1 3660326 3661036 D PFAM: purine and other phosphorylases, family 1; KEGG: son:SO1322 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase; methylthioadenosine nucleosidase 3660326..3661036 Shewanella sp. ANA-3 4478315 YP_870683.1 CDS Shewana3_3053 NC_008577.1 3661068 3662057 D PFAM: cobalamin biosynthesis protein CbiB; KEGG: son:SO1321 CobD-related protein; cobalamin biosynthesis protein CbiB 3661068..3662057 Shewanella sp. ANA-3 4478316 YP_870684.1 CDS Shewana3_3054 NC_008577.1 3662113 3662490 D KEGG: son:SO1320 hypothetical protein; hypothetical protein 3662113..3662490 Shewanella sp. ANA-3 4478317 YP_870685.1 CDS Shewana3_3055 NC_008577.1 3662487 3663113 D PFAM: protein of unknown function UPF0126; KEGG: son:SO1319 hypothetical protein; hypothetical protein 3662487..3663113 Shewanella sp. ANA-3 4478318 YP_870686.1 CDS Shewana3_3056 NC_008577.1 3663115 3663606 D KEGG: son:SO1318 hypothetical protein; hypothetical protein 3663115..3663606 Shewanella sp. ANA-3 4478319 YP_870687.1 CDS Shewana3_3057 NC_008577.1 3663729 3664157 D KEGG: son:SO1317 hypothetical protein; hypothetical protein 3663729..3664157 Shewanella sp. ANA-3 4478320 YP_870688.1 CDS Shewana3_3058 NC_008577.1 3664316 3665512 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(3664316..3665512) Shewanella sp. ANA-3 4478321 YP_870689.1 CDS Shewana3_3059 NC_008577.1 3665640 3667040 D PFAM: peptidase M23B; Opacity-associated protein A, N-terminal domain protein; KEGG: son:SO1314 peptidase, M23/M37 family; peptidase M23B 3665640..3667040 Shewanella sp. ANA-3 4478322 YP_870690.1 CDS anmK NC_008577.1 3667061 3668170 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 3667061..3668170 Shewanella sp. ANA-3 4478323 YP_870691.1 CDS Shewana3_3061 NC_008577.1 3668180 3670330 R PFAM: transcriptional regulator domain protein; WD40 domain protein beta Propeller; KEGG: son:SO1312 TolB domain protein; transcriptional regulator domain-containing protein complement(3668180..3670330) Shewanella sp. ANA-3 4477776 YP_870692.1 CDS Shewana3_3062 NC_008577.1 3670640 3673048 D PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: son:SO1310 hypothetical protein; glutamyl peptidase 3670640..3673048 Shewanella sp. ANA-3 4477777 YP_870693.1 CDS Shewana3_3063 NC_008577.1 3673527 3676550 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO1309 hypothetical TonB-dependent receptor; phosphatidylglycerophosphatase complement(3673527..3676550) Shewanella sp. ANA-3 4477778 YP_870694.1 CDS Shewana3_3064 NC_008577.1 3677237 3677932 D porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z 3677237..3677932 Shewanella sp. ANA-3 4477779 YP_870695.1 CDS Shewana3_3065 NC_008577.1 3678088 3678468 D KEGG: son:SO1306 hypothetical protein; hypothetical protein 3678088..3678468 Shewanella sp. ANA-3 4477780 YP_870696.1 CDS Shewana3_3066 NC_008577.1 3678488 3678943 D KEGG: son:SO1305 hypothetical protein; hypothetical protein 3678488..3678943 Shewanella sp. ANA-3 4477781 YP_870697.1 CDS Shewana3_3067 NC_008577.1 3679071 3679421 R essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA complement(3679071..3679421) Shewanella sp. ANA-3 4477782 YP_870698.1 CDS Shewana3_3068 NC_008577.1 3679414 3680220 R KEGG: son:SO1303 hypothetical protein; hypothetical protein complement(3679414..3680220) Shewanella sp. ANA-3 4477783 YP_870699.1 CDS Shewana3_3069 NC_008577.1 3680295 3682019 D PFAM: Cl- channel, voltage-gated family protein; KEGG: son:SO1302 chloride channel; Cl- channel voltage-gated family protein 3680295..3682019 Shewanella sp. ANA-3 4477784 YP_870700.1 CDS Shewana3_3070 NC_008577.1 3682211 3683230 D Catalyzes the conversion of carbamoyl phosphate and l-aspartate to yield orthophosphate and n-carbamoyl-l-aspartate; aspartate carbamoyltransferase 3682211..3683230 Shewanella sp. ANA-3 4477785 YP_870701.1 CDS Shewana3_3071 NC_008577.1 3683258 3684550 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3683258..3684550 Shewanella sp. ANA-3 4477786 YP_870702.1 CDS Shewana3_3072 NC_008577.1 3684637 3684834 R hypothetical protein complement(3684637..3684834) Shewanella sp. ANA-3 4477787 YP_870703.1 CDS Shewana3_3073 NC_008577.1 3685305 3686615 D PFAM: Citrate transporter; KEGG: sde:Sde_2571 endonuclease III/Nth; citrate transporter 3685305..3686615 Shewanella sp. ANA-3 4477788 YP_870704.1 CDS Shewana3_3074 NC_008577.1 3686679 3687779 R KEGG: son:SO1298 general secretion pathway protein B; general secretion pathway protein B complement(3686679..3687779) Shewanella sp. ANA-3 4477789 YP_870705.1 CDS Shewana3_3075 NC_008577.1 3687779 3689467 R PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: son:SO1297 general secretion pathway protein A; peptidoglycan binding domain-containing protein complement(3687779..3689467) Shewanella sp. ANA-3 4477790 YP_870706.1 CDS Shewana3_3076 NC_008577.1 3689642 3690892 D PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: yps:YPTB3411 tRNA nucleotidyltransferase (CCA-adding enzyme); metal dependent phosphohydrolase 3689642..3690892 Shewanella sp. ANA-3 4477791 YP_870707.1 CDS Shewana3_3077 NC_008577.1 3691127 3691393 D KEGG: son:SO1295 major outer membrane lipoprotein, putative; major outer membrane lipoprotein 3691127..3691393 Shewanella sp. ANA-3 4477792 YP_870708.1 CDS Shewana3_3078 NC_008577.1 3692017 3692856 R KEGG: son:SO1294 ribosomal RNA large subunit methyltransferase A, putative; ribosomal RNA large subunit methyltransferase A complement(3692017..3692856) Shewanella sp. ANA-3 4477793 YP_870709.1 CDS Shewana3_3079 NC_008577.1 3692941 3693741 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(3692941..3693741) Shewanella sp. ANA-3 4477794 YP_870710.1 CDS Shewana3_3080 NC_008577.1 3693760 3694269 R TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: son:SO1292 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(3693760..3694269) Shewanella sp. ANA-3 4477795 YP_870711.1 CDS Shewana3_3081 NC_008577.1 3694319 3694669 R TIGRFAM: dihydroneopterin aldolase; KEGG: son:SO1291 dihydroneopterin aldolase; dihydroneopterin aldolase complement(3694319..3694669) Shewanella sp. ANA-3 4477796 YP_870712.1 CDS Shewana3_3082 NC_008577.1 3694931 3695542 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 3694931..3695542 Shewanella sp. ANA-3 4477797 YP_870713.1 CDS Shewana3_3083 NC_008577.1 3695729 3696745 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(3695729..3696745) Shewanella sp. ANA-3 4477798 YP_870714.1 CDS rpsU NC_008577.1 3696960 3697175 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3696960..3697175 Shewanella sp. ANA-3 4477799 YP_870715.1 CDS Shewana3_3085 NC_008577.1 3697182 3697625 D PFAM: GatB/Yqey domain protein; KEGG: son:SO1287 hypothetical protein; GatB/Yqey domain-containing protein 3697182..3697625 Shewanella sp. ANA-3 4477800 YP_870716.1 CDS Shewana3_3086 NC_008577.1 3697709 3699433 D KEGG: son:SO1286 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase DnaG, DnaB-binding; DNA primase catalytic core, N-terminal domain protein; SMART: Toprim sub domain protein; DNA primase 3697709..3699433 Shewanella sp. ANA-3 4477801 YP_870717.1 CDS Shewana3_3087 NC_008577.1 3699560 3701419 D TIGRFAM: RNA polymerase sigma factor RpoD; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: son:SO1284 RNA polymerase sigma-70 factor; RNA polymerase sigma-70 subunit RpoD 3699560..3701419 Shewanella sp. ANA-3 4477802 YP_870718.1 CDS Shewana3_3088 NC_008577.1 3702013 3704133 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO1278 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(3702013..3704133) Shewanella sp. ANA-3 4477804 YP_870719.1 CDS Shewana3_3089 NC_008577.1 3704553 3706103 D TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor, type I/II extracellular region; major facilitator superfamily MFS_1; KEGG: son:SO1277 proton-dependent oligopeptide transporter (POT) family protein; amino acid/peptide transporter 3704553..3706103 Shewanella sp. ANA-3 4477805 YP_870720.1 CDS Shewana3_3090 NC_008577.1 3706474 3707523 D PFAM: luciferase family protein; KEGG: pha:PSHAb0540 putative alkanal monooxygenase (FMN-linked); luciferase family protein 3706474..3707523 Shewanella sp. ANA-3 4477806 YP_870721.1 CDS Shewana3_3091 NC_008577.1 3707576 3708853 R catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase complement(3707576..3708853) Shewanella sp. ANA-3 4477807 YP_870722.1 CDS Shewana3_3092 NC_008577.1 3708956 3710404 R TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: son:SO1275 succinate-semialdehyde dehydrogenase (NADP+); succinate semialdehyde dehydrogenase complement(3708956..3710404) Shewanella sp. ANA-3 4477808 YP_870723.1 CDS Shewana3_3093 NC_008577.1 3710461 3711747 R PFAM: FAD dependent oxidoreductase; KEGG: son:SO1274 probable oxidoreductase; FAD dependent oxidoreductase complement(3710461..3711747) Shewanella sp. ANA-3 4477809 YP_870724.1 CDS Shewana3_3094 NC_008577.1 3712027 3712842 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1273 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(3712027..3712842) Shewanella sp. ANA-3 4477810 YP_870725.1 CDS Shewana3_3095 NC_008577.1 3712839 3713744 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO1272 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(3712839..3713744) Shewanella sp. ANA-3 4477811 YP_870726.1 CDS Shewana3_3096 NC_008577.1 3713741 3714877 R KEGG: son:SO1271 polyamine ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase complement(3713741..3714877) Shewanella sp. ANA-3 4477812 YP_870727.1 CDS Shewana3_3097 NC_008577.1 3715037 3716200 R PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO1270 polyamine ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein complement(3715037..3716200) Shewanella sp. ANA-3 4477813 YP_870728.1 CDS Shewana3_3098 NC_008577.1 3716755 3718110 R PFAM: glutamine synthetase, catalytic region; KEGG: son:SO1268 glutamine synthetase; L-glutamine synthetase complement(3716755..3718110) Shewanella sp. ANA-3 4477814 YP_870729.1 CDS Shewana3_3099 NC_008577.1 3718112 3718873 R PFAM: peptidase C26; KEGG: son:SO1267 hypothetical glutamine amidotransferase; peptidase C26 complement(3718112..3718873) Shewanella sp. ANA-3 4477815 YP_870730.1 CDS Shewana3_3100 NC_008577.1 3719277 3719903 R PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: son:SO1265 transcriptional regulator, putative; XRE family transcriptional regulator complement(3719277..3719903) Shewanella sp. ANA-3 4477816 YP_870731.1 CDS Shewana3_3101 NC_008577.1 3720060 3721367 D PFAM: FAD dependent oxidoreductase; KEGG: son:SO1264 hypothetical oxidoreductase; FAD dependent oxidoreductase 3720060..3721367 Shewanella sp. ANA-3 4477817 YP_870732.1 CDS Shewana3_3102 NC_008577.1 3721412 3721924 R KEGG: son:SO1262 hypothetical protein; hypothetical protein complement(3721412..3721924) Shewanella sp. ANA-3 4477818 YP_870733.1 CDS Shewana3_3103 NC_008577.1 3722010 3722867 R PFAM: Rhodanese domain protein; KEGG: son:SO1261 mercaptopyruvate sulfurtransferase; rhodanese domain-containing protein complement(3722010..3722867) Shewanella sp. ANA-3 4477819 YP_870734.1 CDS Shewana3_3104 NC_008577.1 3723013 3723408 R TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: ilo:IL1764 lipoprotein A family protein; rare lipoprotein A complement(3723013..3723408) Shewanella sp. ANA-3 4477820 YP_870735.1 CDS Shewana3_3105 NC_008577.1 3723574 3725070 R PFAM: aldehyde dehydrogenase; KEGG: son:SO3496 aldehyde dehydrogenase; aldehyde dehydrogenase complement(3723574..3725070) Shewanella sp. ANA-3 4477821 YP_870736.1 CDS Shewana3_3106 NC_008577.1 3725351 3726691 D catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 3725351..3726691 Shewanella sp. ANA-3 4477822 YP_870737.1 CDS Shewana3_3107 NC_008577.1 3726742 3728232 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: hch:HCH_01157 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 3726742..3728232 Shewanella sp. ANA-3 4477823 YP_870738.1 CDS Shewana3_3108 NC_008577.1 3728256 3728615 D PFAM: protein of unknown function DUF861, cupin_3; KEGG: son:SO3501 hypothetical protein; hypothetical protein 3728256..3728615 Shewanella sp. ANA-3 4477824 YP_870739.1 CDS Shewana3_3109 NC_008577.1 3728801 3729523 D TIGRFAM: conserved hypothetical protein; KEGG: son:SO3502 hypothetical protein; hypothetical protein 3728801..3729523 Shewanella sp. ANA-3 4477825 YP_870740.1 CDS Shewana3_3110 NC_008577.1 3729588 3730886 R TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO3503 glucose/galactose transporter; glucose/galactose transporter complement(3729588..3730886) Shewanella sp. ANA-3 4477826 YP_870741.1 CDS Shewana3_3111 NC_008577.1 3731226 3732413 R KEGG: son:SO3504 hypothetical protein; hypothetical protein complement(3731226..3732413) Shewanella sp. ANA-3 4477827 YP_870742.1 CDS Shewana3_3112 NC_008577.1 3732552 3733688 R TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase; N-acetylglucosamine 6-phosphate deacetylase complement(3732552..3733688) Shewanella sp. ANA-3 4477706 YP_870743.1 CDS Shewana3_3113 NC_008577.1 3733732 3734730 R PFAM: sugar isomerase (SIS); KEGG: son:SO3506 glucosamine-6-phosphate isomerase; sugar isomerase (SIS) complement(3733732..3734730) Shewanella sp. ANA-3 4477707 YP_870744.1 CDS Shewana3_3114 NC_008577.1 3734789 3735697 R PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: son:SO3507 hypothetical protein; BadF/BadG/BcrA/BcrD type ATPase complement(3734789..3735697) Shewanella sp. ANA-3 4477708 YP_870745.1 CDS Shewana3_3115 NC_008577.1 3735922 3738729 R PFAM: glycoside hydrolase, family 20; Carbohydrate-binding, chitobiase/hexosaminidase-type domain protein; glycoside hydrolase, family 20 domain protein; KEGG: son:SO3509 beta-hexosaminidase b precursor; beta-N-acetylhexosaminidase complement(3735922..3738729) Shewanella sp. ANA-3 4477709 YP_870746.1 CDS Shewana3_3116 NC_008577.1 3738758 3740245 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: sde:Sde_0391 putative methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3738758..3740245) Shewanella sp. ANA-3 4477710 YP_870747.1 CDS Shewana3_3117 NC_008577.1 3740245 3741234 R KEGG: sde:Sde_2658 type IV pilus assembly protein PilM; hypothetical protein complement(3740245..3741234) Shewanella sp. ANA-3 4477711 YP_870748.1 CDS Shewana3_3118 NC_008577.1 3741723 3742625 D PFAM: protein of unknown function DUF81; KEGG: cps:CPS_1011 hypothetical protein; hypothetical protein 3741723..3742625 Shewanella sp. ANA-3 4477712 YP_870749.1 CDS Shewana3_3119 NC_008577.1 3742663 3743322 R hypothetical protein complement(3742663..3743322) Shewanella sp. ANA-3 4477713 YP_870750.1 CDS Shewana3_3120 NC_008577.1 3743334 3744866 R PFAM: tryptophan halogenase; KEGG: son:SO3513 tryptophan halogenase, putative; tryptophan halogenase complement(3743334..3744866) Shewanella sp. ANA-3 4477714 YP_870751.1 CDS Shewana3_3121 NC_008577.1 3744928 3747591 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO3514 hypothetical TonB-dependent receptor; TonB-dependent receptor complement(3744928..3747591) Shewanella sp. ANA-3 4477715 YP_870752.1 CDS Shewana3_3122 NC_008577.1 3748018 3749034 D PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: son:SO3516 transcriptional regulator, LacI family; LacI family transcriptional regulator 3748018..3749034 Shewanella sp. ANA-3 4477716 YP_870753.1 CDS Shewana3_3123 NC_008577.1 3749095 3750384 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO3517 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(3749095..3750384) Shewanella sp. ANA-3 4477717 YP_870754.1 CDS Shewana3_3124 NC_008577.1 3750577 3750915 R PFAM: nitrogen regulatory protein P-II; KEGG: son:SO3519 nitrogen regulatory protein P-II 1; nitrogen regulatory protein P-II complement(3750577..3750915) Shewanella sp. ANA-3 4477718 YP_870755.1 CDS Shewana3_3125 NC_008577.1 3751153 3751665 D PFAM: methylation site containing protein; KEGG: son:SO3520 type IV pilus biogenesis protein, putative; methylation site containing protein 3751153..3751665 Shewanella sp. ANA-3 4477719 YP_870756.1 CDS Shewana3_3126 NC_008577.1 3751819 3752301 D PFAM: methylation site containing protein; KEGG: son:SO3521 type IV pilus biogenesis protein, putative; methylation site containing protein 3751819..3752301 Shewanella sp. ANA-3 4477720 YP_870757.1 CDS Shewana3_3127 NC_008577.1 3752330 3752629 R hypothetical protein complement(3752330..3752629) Shewanella sp. ANA-3 4477721 YP_870758.1 CDS Shewana3_3128 NC_008577.1 3752626 3753024 R PFAM: methylation site containing protein; KEGG: son:SO3524 type IV pilus biogenesis protein PilE; methylation site containing protein complement(3752626..3753024) Shewanella sp. ANA-3 4477722 YP_870759.1 CDS Shewana3_3129 NC_008577.1 3753033 3756539 R KEGG: son:SO3525 type IV pilin biogenesis protein, putative; type IV pilin biogenesis protein complement(3753033..3756539) Shewanella sp. ANA-3 4477723 YP_870760.1 CDS Shewana3_3130 NC_008577.1 3756543 3757004 R KEGG: son:SO3526 type IV pilus assembly protein PilX; type IV pilus assembly protein PilX complement(3756543..3757004) Shewanella sp. ANA-3 4477724 YP_870761.1 CDS Shewana3_3131 NC_008577.1 3757020 3758012 R TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: son:SO3527 type IV pilus assembly protein PilW; prepilin-type cleavage/methylation-like protein complement(3757020..3758012) Shewanella sp. ANA-3 4477725 YP_870762.1 CDS Shewana3_3132 NC_008577.1 3758013 3758573 R TIGRFAM: type IV pilus modification protein PilV; PFAM: methylation site containing protein; KEGG: son:SO3528 type IV pilus assembly protein PilV; type IV pilus modification protein PilV complement(3758013..3758573) Shewanella sp. ANA-3 4477726 YP_870763.1 CDS ispH NC_008577.1 3758789 3759745 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(3758789..3759745) Shewanella sp. ANA-3 4477727 YP_870764.1 CDS Shewana3_3134 NC_008577.1 3759747 3760169 R PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO3530 peptidyl-prolyl cis-trans isomerase FkbP; peptidylprolyl isomerase, FKBP-type complement(3759747..3760169) Shewanella sp. ANA-3 4477728 YP_870765.1 CDS lspA NC_008577.1 3760169 3760681 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(3760169..3760681) Shewanella sp. ANA-3 4477729 YP_870766.1 CDS ileS NC_008577.1 3760691 3763513 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(3760691..3763513) Shewanella sp. ANA-3 4477730 YP_870767.1 CDS Shewana3_3137 NC_008577.1 3763546 3764481 R TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase/FAD synthetase; KEGG: son:SO3533 riboflavin biosynthesis protein RibF; riboflavin kinase/FMN adenylyltransferase complement(3763546..3764481) Shewanella sp. ANA-3 4477731 YP_870768.1 CDS Shewana3_3138 NC_008577.1 3764547 3766106 R TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: son:SO3534 MviN protein; integral membrane protein MviN complement(3764547..3766106) Shewanella sp. ANA-3 4477732 YP_870769.1 CDS Shewana3_3139 NC_008577.1 3766171 3766275 R hypothetical protein complement(3766171..3766275) Shewanella sp. ANA-3 4477733 YP_870770.1 CDS rpsT NC_008577.1 3766359 3766625 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 3766359..3766625 Shewanella sp. ANA-3 4477734 YP_870771.1 CDS Shewana3_3141 NC_008577.1 3766686 3766982 R PFAM: regulatory protein, ArsR; KEGG: son:SO3538 transcriptional regulator HlyU; ArsR family transcriptional regulator complement(3766686..3766982) Shewanella sp. ANA-3 4477735 YP_870772.1 CDS Shewana3_3142 NC_008577.1 3767118 3768524 D PFAM: peptidase M20; peptidase M28; KEGG: son:SO3539 peptidase, M28D family; peptidase M28 3767118..3768524 Shewanella sp. ANA-3 4477736 YP_870773.1 CDS Shewana3_3143 NC_008577.1 3768597 3769370 R PFAM: protein of unknown function DUF328; KEGG: son:SO3540 hypothetical protein; hypothetical protein complement(3768597..3769370) Shewanella sp. ANA-3 4477737 YP_870774.1 CDS Shewana3_3144 NC_008577.1 3769478 3770944 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: son:SO3541 sodium:alanine symporter family protein; amino acid carrier protein complement(3769478..3770944) Shewanella sp. ANA-3 4477738 YP_870775.1 CDS Shewana3_3145 NC_008577.1 3771375 3773741 D PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: son:SO3542 putative phosphoketolase; putative phosphoketolase 3771375..3773741 Shewanella sp. ANA-3 4477739 YP_870776.1 CDS Shewana3_3146 NC_008577.1 3773981 3775102 D PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: son:SO3545 OmpA family protein; OmpA/MotB domain-containing protein 3773981..3775102 Shewanella sp. ANA-3 4477740 YP_870777.1 CDS Shewana3_3147 NC_008577.1 3775351 3776307 D TIGRFAM: transaldolase; PFAM: Transaldolase; KEGG: son:SO3546 transaldolase; transaldolase B 3775351..3776307 Shewanella sp. ANA-3 4477741 YP_870778.1 CDS pgi NC_008577.1 3776328 3777965 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 3776328..3777965 Shewanella sp. ANA-3 4477742 YP_870779.1 CDS Shewana3_3149 NC_008577.1 3778182 3778367 D KEGG: son:SO3548 hypothetical protein; hypothetical protein 3778182..3778367 Shewanella sp. ANA-3 4477743 YP_870780.1 CDS Shewana3_3150 NC_008577.1 3778435 3778971 R PFAM: Hemerythrin HHE cation binding domain protein; KEGG: son:SO3549 hypothetical protein; hemerythrin HHE cation binding domain-containing protein complement(3778435..3778971) Shewanella sp. ANA-3 4477744 YP_870781.1 CDS Shewana3_3151 NC_008577.1 3779194 3779901 R KEGG: son:SO3550 hypothetical protein; hypothetical protein complement(3779194..3779901) Shewanella sp. ANA-3 4477745 YP_870782.1 CDS Shewana3_3152 NC_008577.1 3779894 3780496 R PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: son:SO3551 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(3779894..3780496) Shewanella sp. ANA-3 4477746 YP_870783.1 CDS Shewana3_3153 NC_008577.1 3780541 3782382 R PFAM: von Willebrand factor, type A; KEGG: son:SO3552 von Willebrand factor type A domain protein; von Willebrand factor type A domain-containing protein complement(3780541..3782382) Shewanella sp. ANA-3 4477747 YP_870784.1 CDS Shewana3_3154 NC_008577.1 3782596 3784368 D putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM 3782596..3784368 Shewanella sp. ANA-3 4477748 YP_870785.1 CDS Shewana3_3155 NC_008577.1 3784624 3785115 D TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: son:SO3554 phosphoribosylaminoimidazole carboxylase, catalytic subunit; phosphoribosylaminoimidazole carboxylase catalytic subunit 3784624..3785115 Shewanella sp. ANA-3 4477749 YP_870786.1 CDS Shewana3_3156 NC_008577.1 3785115 3786212 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 3785115..3786212 Shewanella sp. ANA-3 4477750 YP_870787.1 CDS Shewana3_3157 NC_008577.1 3786365 3787627 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: son:SO3556 cyclic nucleotide phosphodiesterase, putative; GAF sensor-containing diguanylate cyclase 3786365..3787627 Shewanella sp. ANA-3 4477751 YP_870788.1 CDS Shewana3_3158 NC_008577.1 3787678 3788295 R KEGG: son:SO3557 hypothetical protein; hypothetical protein complement(3787678..3788295) Shewanella sp. ANA-3 4477752 YP_870789.1 CDS Shewana3_3159 NC_008577.1 3788452 3788913 R KEGG: son:SO3558 hypothetical protein; hypothetical protein complement(3788452..3788913) Shewanella sp. ANA-3 4477753 YP_870790.1 CDS Shewana3_3160 NC_008577.1 3788913 3790562 R involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase complement(3788913..3790562) Shewanella sp. ANA-3 4477754 YP_870791.1 CDS Shewana3_3161 NC_008577.1 3790746 3793595 R PFAM: peptidase M16 domain protein; KEGG: son:SO3560 peptidase, M16 family; peptidase M16 domain-containing protein complement(3790746..3793595) Shewanella sp. ANA-3 4477755 YP_870792.1 CDS Shewana3_3162 NC_008577.1 3793737 3794162 R KEGG: son:SO3561 hypothetical protein; hypothetical protein complement(3793737..3794162) Shewanella sp. ANA-3 4477756 YP_870793.1 CDS Shewana3_3163 NC_008577.1 3794450 3795703 D PFAM: sodium:dicarboxylate symporter; KEGG: son:SO3562 proton/glutamate symporter, putative; sodium:dicarboxylate symporter 3794450..3795703 Shewanella sp. ANA-3 4477757 YP_870794.1 CDS Shewana3_3164 NC_008577.1 3796081 3797211 R TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; KEGG: vvy:VV2798 oxaloacetate decarboxylase, beta subunit; sodium ion-translocating decarboxylase subunit beta complement(3796081..3797211) Shewanella sp. ANA-3 4477758 YP_870795.1 CDS Shewana3_3165 NC_008577.1 3797220 3799055 R catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase complement(3797220..3799055) Shewanella sp. ANA-3 4477759 YP_870796.1 CDS Shewana3_3166 NC_008577.1 3799067 3799324 R TIGRFAM: sodium pump decarboxylases, gamma subunit; PFAM: sodium pump decarboxylase, gamma subunit; KEGG: vvy:VV2800 oxaloacetate decarboxylase, gamma subunit; sodium pump decarboxylase subunit gamma complement(3799067..3799324) Shewanella sp. ANA-3 4477760 YP_870797.1 CDS Shewana3_3167 NC_008577.1 3805640 3806458 R TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: son:SO3575 CDP-diacylglycerol--serine O-phosphatidyltransferase, putative; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(3805640..3806458) Shewanella sp. ANA-3 4477764 YP_870798.1 CDS Shewana3_3168 NC_008577.1 3806550 3807014 D KEGG: son:SO3576 hypothetical protein; hypothetical protein 3806550..3807014 Shewanella sp. ANA-3 4477765 YP_870799.1 CDS Shewana3_3169 NC_008577.1 3807197 3809770 R PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: son:SO3577 clpB protein; ATPase complement(3807197..3809770) Shewanella sp. ANA-3 4477766 YP_870800.1 CDS Shewana3_3170 NC_008577.1 3809888 3810676 R PFAM: protein of unknown function DUF152; KEGG: son:SO3578 conserved hypothetical protein TIGR00726; hypothetical protein complement(3809888..3810676) Shewanella sp. ANA-3 4477767 YP_870801.1 CDS Shewana3_3171 NC_008577.1 3810680 3811651 R TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pha:PSHAa0933 pseudouridine synthase; ribosomal large subunit pseudouridine synthase D complement(3810680..3811651) Shewanella sp. ANA-3 4477768 YP_870802.1 CDS Shewana3_3172 NC_008577.1 3811687 3812535 D KEGG: son:SO3580 putative lipoprotein; putative lipoprotein 3811687..3812535 Shewanella sp. ANA-3 4477769 YP_870803.1 CDS Shewana3_3173 NC_008577.1 3813267 3814892 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3582 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3813267..3814892 Shewanella sp. ANA-3 4477773 YP_870804.1 CDS Shewana3_3174 NC_008577.1 3815059 3816252 D PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: hch:HCH_01369 flavodoxin reductases (ferredoxin-NADPH reductases) family 1; globin 3815059..3816252 Shewanella sp. ANA-3 4477774 YP_870805.1 CDS Shewana3_3175 NC_008577.1 3816350 3817075 R TIGRFAM: Pseudouridine synthase, Rsu; PFAM: pseudouridine synthase; KEGG: cps:CPS_4413 putative ribosomal small subunit pseudouridine synthase A; pseudouridine synthase, Rsu complement(3816350..3817075) Shewanella sp. ANA-3 4477775 YP_870806.1 CDS Shewana3_3176 NC_008577.1 3817090 3817710 R PFAM: Helix-turn-helix, type 11 domain protein; KEGG: son:SO3584 hypothetical protein; transcriptional regulator complement(3817090..3817710) Shewanella sp. ANA-3 4478239 YP_870807.1 CDS Shewana3_3177 NC_008577.1 3817857 3818471 D PFAM: NADPH-dependent FMN reductase; KEGG: son:SO3585 azoreductase, putative; NADPH-dependent FMN reductase 3817857..3818471 Shewanella sp. ANA-3 4478240 YP_870808.1 CDS Shewana3_3178 NC_008577.1 3818522 3818938 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO3586 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 3818522..3818938 Shewanella sp. ANA-3 4478241 YP_870809.1 CDS Shewana3_3179 NC_008577.1 3819083 3819553 D KEGG: son:SO3587 hypothetical protein; hypothetical protein 3819083..3819553 Shewanella sp. ANA-3 4478242 YP_870810.1 CDS Shewana3_3180 NC_008577.1 3819635 3820204 R PFAM: GPR1/FUN34/yaaH family protein; KEGG: son:SO3588 gpr1/fun34/YaaH family protein; GPR1/FUN34/yaaH family protein complement(3819635..3820204) Shewanella sp. ANA-3 4478243 YP_870811.1 CDS Shewana3_3181 NC_008577.1 3820931 3821167 D KEGG: son:SO3591 hypothetical protein; hypothetical protein 3820931..3821167 Shewanella sp. ANA-3 4478244 YP_870812.1 CDS Shewana3_3182 NC_008577.1 3821466 3822380 D PFAM: MltA-interacting MipA family protein; KEGG: son:SO3592 putative outer membrane protein; MltA-interacting MipA family protein 3821466..3822380 Shewanella sp. ANA-3 4478245 YP_870813.1 CDS Shewana3_3183 NC_008577.1 3822407 3822799 D KEGG: son:SO3593 hypothetical protein; hypothetical protein 3822407..3822799 Shewanella sp. ANA-3 4478246 YP_870814.1 CDS Shewana3_3184 NC_008577.1 3822799 3823512 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO3594 transcriptional regulatory protein RstA, putative; two component transcriptional regulator 3822799..3823512 Shewanella sp. ANA-3 4478247 YP_870815.1 CDS Shewana3_3185 NC_008577.1 3823521 3824789 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO3595 sensor protein RstB, putative; ATPase domain-containing protein 3823521..3824789 Shewanella sp. ANA-3 4478248 YP_870816.1 CDS Shewana3_3186 NC_008577.1 3824818 3825126 R PFAM: protein of unknown function DUF1289; KEGG: son:SO3596 hypothetical protein; hypothetical protein complement(3824818..3825126) Shewanella sp. ANA-3 4478249 YP_870817.1 CDS Shewana3_3187 NC_008577.1 3825284 3825820 D KEGG: son:SO3597 hypothetical protein; hypothetical protein 3825284..3825820 Shewanella sp. ANA-3 4478250 YP_870818.1 CDS cysM NC_008577.1 3825989 3826867 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B complement(3825989..3826867) Shewanella sp. ANA-3 4478251 YP_870819.1 CDS Shewana3_3189 NC_008577.1 3827075 3828082 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO3599 sulfate ABC transporter, periplasmic sulfate-binding protein; sulfate ABC transporter substrate-binding protein 3827075..3828082 Shewanella sp. ANA-3 4478252 YP_870820.1 CDS Shewana3_3190 NC_008577.1 3828266 3829111 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO3600 sulfate ABC transporter, permease protein; sulfate ABC transporter permease 3828266..3829111 Shewanella sp. ANA-3 4478253 YP_870821.1 CDS Shewana3_3191 NC_008577.1 3829121 3829990 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO3601 sulfate ABC transporter, permease protein; sulfate ABC transporter permease 3829121..3829990 Shewanella sp. ANA-3 4478254 YP_870822.1 CDS Shewana3_3192 NC_008577.1 3829987 3831117 D KEGG: son:SO3602 sulfate ABC transporter, ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase 3829987..3831117 Shewanella sp. ANA-3 4478255 YP_870823.1 CDS Shewana3_3193 NC_008577.1 3831240 3832385 R PFAM: secretion protein HlyD family protein; KEGG: son:SO3603 secretion protein, HlyD family; secretion protein HlyD family protein complement(3831240..3832385) Shewanella sp. ANA-3 4478256 YP_870824.1 CDS Shewana3_3194 NC_008577.1 3832387 3832803 R KEGG: vfi:VFA0380 hypothetical protein; hypothetical protein complement(3832387..3832803) Shewanella sp. ANA-3 4478257 YP_870825.1 CDS Shewana3_3195 NC_008577.1 3833304 3833759 R hypothetical protein complement(3833304..3833759) Shewanella sp. ANA-3 4478258 YP_870826.1 CDS Shewana3_3196 NC_008577.1 3833991 3835550 R PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: son:SO3611 ATPase, AAA family; ATPase central domain-containing protein complement(3833991..3835550) Shewanella sp. ANA-3 4478259 YP_870827.1 CDS purT NC_008577.1 3835696 3836871 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 3835696..3836871 Shewanella sp. ANA-3 4478260 YP_870828.1 CDS Shewana3_3198 NC_008577.1 3837033 3838613 D KEGG: son:SO3614 hypothetical protein; hypothetical protein 3837033..3838613 Shewanella sp. ANA-3 4478261 YP_870829.1 CDS Shewana3_3199 NC_008577.1 3838603 3840882 D SMART: Tetratricopeptide domain protein; KEGG: son:SO3615 hypothetical protein; hypothetical protein 3838603..3840882 Shewanella sp. ANA-3 4478262 YP_870830.1 CDS Shewana3_3200 NC_008577.1 3842938 3843972 D PFAM: protein of unknown function DUF1568; KEGG: son:SO0910 hypothetical protein; hypothetical protein 3842938..3843972 Shewanella sp. ANA-3 4478263 YP_870831.1 CDS Shewana3_3201 NC_008577.1 3844358 3845311 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO3631 glycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(3844358..3845311) Shewanella sp. ANA-3 4478264 YP_870832.1 CDS Shewana3_3202 NC_008577.1 3845358 3846002 R KEGG: son:SO3632 hypothetical protein; hypothetical protein complement(3845358..3846002) Shewanella sp. ANA-3 4478265 YP_870833.1 CDS djlA NC_008577.1 3846058 3846846 R functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein complement(3846058..3846846) Shewanella sp. ANA-3 4478266 YP_870834.1 CDS Shewana3_3204 NC_008577.1 3846952 3847617 R PFAM: Nucleotidyl transferase; KEGG: son:SO3634 nucleotidyltransferase family protein; nucleotidyl transferase complement(3846952..3847617) Shewanella sp. ANA-3 4478267 YP_870835.1 CDS Shewana3_3205 NC_008577.1 3847614 3848705 R PFAM: aminoglycoside phosphotransferase; KEGG: son:SO3635 hypothetical phosphotransferase; aminoglycoside phosphotransferase complement(3847614..3848705) Shewanella sp. ANA-3 4478268 YP_870836.1 CDS Shewana3_3206 NC_008577.1 3848821 3851118 D PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: son:SO3636 organic solvent tolerance protein; organic solvent tolerance protein 3848821..3851118 Shewanella sp. ANA-3 4478269 YP_870837.1 CDS Shewana3_3207 NC_008577.1 3851338 3852642 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: son:SO3637 survival protein surA; PpiC-type peptidyl-prolyl cis-trans isomerase 3851338..3852642 Shewanella sp. ANA-3 4478270 YP_870838.1 CDS pdxA NC_008577.1 3852649 3853635 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 3852649..3853635 Shewanella sp. ANA-3 4478271 YP_870839.1 CDS ksgA NC_008577.1 3853650 3854456 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 3853650..3854456 Shewanella sp. ANA-3 4477301 YP_870840.1 CDS apaG NC_008577.1 3854512 3854892 D protein associated with Co2+ and Mg2+ efflux; ApaG protein 3854512..3854892 Shewanella sp. ANA-3 4477302 YP_870841.1 CDS apaH NC_008577.1 3854914 3855738 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 3854914..3855738 Shewanella sp. ANA-3 4477303 YP_870842.1 CDS Shewana3_3212 NC_008577.1 3855835 3857856 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO3642 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3855835..3857856 Shewanella sp. ANA-3 4477304 YP_870843.1 CDS Shewana3_3213 NC_008577.1 3858222 3858635 R KEGG: son:SO3645 hypothetical protein; hypothetical protein complement(3858222..3858635) Shewanella sp. ANA-3 4477305 YP_870844.1 CDS Shewana3_3214 NC_008577.1 3858838 3859320 R PFAM: dihydrofolate reductase region; KEGG: son:SO3646 dihydrofolate reductase; dihydrofolate reductase complement(3858838..3859320) Shewanella sp. ANA-3 4477306 YP_870845.1 CDS Shewana3_3215 NC_008577.1 3859343 3859816 R KEGG: son:SO3647 hypothetical protein; hypothetical protein complement(3859343..3859816) Shewanella sp. ANA-3 4477307 YP_870846.1 CDS Shewana3_3216 NC_008577.1 3859813 3860574 R PFAM: protein of unknown function DUF1212; KEGG: son:SO3648 hypothetical protein; hypothetical protein complement(3859813..3860574) Shewanella sp. ANA-3 4477308 YP_870847.1 CDS obgE NC_008577.1 3860602 3861768 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(3860602..3861768) Shewanella sp. ANA-3 4477309 YP_870848.1 CDS rpmA NC_008577.1 3861981 3862235 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(3861981..3862235) Shewanella sp. ANA-3 4477310 YP_870849.1 CDS rplU NC_008577.1 3862250 3862561 R PFAM: ribosomal protein L21; KEGG: son:SO3652 ribosomal protein L21; 50S ribosomal protein L21 complement(3862250..3862561) Shewanella sp. ANA-3 4477311 YP_870850.1 CDS Shewana3_3220 NC_008577.1 3862811 3863806 D PFAM: Polyprenyl synthetase; KEGG: son:SO3653 octaprenyl-diphosphate synthase; polyprenyl synthetase 3862811..3863806 Shewanella sp. ANA-3 4477312 YP_870851.1 CDS Shewana3_3221 NC_008577.1 3863883 3864548 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(3863883..3864548) Shewanella sp. ANA-3 4477313 YP_870852.1 CDS Shewana3_3222 NC_008577.1 3864842 3865276 R KEGG: cvi:CV1035 hypothetical protein; hypothetical protein complement(3864842..3865276) Shewanella sp. ANA-3 4477314 YP_870853.1 CDS Shewana3_3223 NC_008577.1 3865673 3865987 D KEGG: son:SO3656 hypothetical protein; hypothetical protein 3865673..3865987 Shewanella sp. ANA-3 4477315 YP_870854.1 CDS Shewana3_3224 NC_008577.1 3866093 3866707 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO3657 transporter, LysE family; lysine exporter protein LysE/YggA complement(3866093..3866707) Shewanella sp. ANA-3 4477316 YP_870855.1 CDS Shewana3_3225 NC_008577.1 3866794 3868344 R PFAM: peptidase S10, serine carboxypeptidase; KEGG: pcu:pc0501 hypothetical protein; peptidase S10, serine carboxypeptidase complement(3866794..3868344) Shewanella sp. ANA-3 4477317 YP_870856.1 CDS Shewana3_3226 NC_008577.1 3868548 3869093 D KEGG: son:SO3659 thiol:disulfide interchange protein, putative; thiol:disulfide interchange protein 3868548..3869093 Shewanella sp. ANA-3 4477335 YP_870857.1 CDS Shewana3_3227 NC_008577.1 3869605 3871071 D KEGG: son:SO3660 sigma-54 dependent transcriptional regulator/sensory box protein; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; AAA ATPase; Fis family transcriptional regulator 3869605..3871071 Shewanella sp. ANA-3 4477336 YP_870858.1 CDS Shewana3_3228 NC_008577.1 3871232 3872665 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO3660.1 hypothetical ferredoxin; 4Fe-4S ferredoxin 3871232..3872665 Shewanella sp. ANA-3 4477337 YP_870859.1 CDS Shewana3_3229 NC_008577.1 3873063 3873287 D KEGG: ilo:IL2066 hypothetical protein; hypothetical protein 3873063..3873287 Shewanella sp. ANA-3 4477338 YP_870860.1 CDS Shewana3_3230 NC_008577.1 3873280 3874062 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dps:DP2240 probable methionine aminopeptidase, MAP; methionine aminopeptidase 3873280..3874062 Shewanella sp. ANA-3 4477339 YP_870861.1 CDS Shewana3_3231 NC_008577.1 3874299 3875903 D PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO3664 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 3874299..3875903 Shewanella sp. ANA-3 4477340 YP_870862.1 CDS Shewana3_3232 NC_008577.1 3876006 3877862 R KEGG: son:SO3665 ABC transporter, ATP-binding/permease protein, putative; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein complement(3876006..3877862) Shewanella sp. ANA-3 4477341 YP_870863.1 CDS Shewana3_3233 NC_008577.1 3878146 3878703 R PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: son:SO3667 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(3878146..3878703) Shewanella sp. ANA-3 4477342 YP_870864.1 CDS Shewana3_3234 NC_008577.1 3878722 3879288 R PFAM: protein of unknown function DUF1008; KEGG: son:SO3668 hypothetical protein; heme utilization protein HuvX complement(3878722..3879288) Shewanella sp. ANA-3 4477343 YP_870865.1 CDS Shewana3_3235 NC_008577.1 3879310 3881397 R TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO3669 heme transport protein; TonB-dependent heme/hemoglobin receptor family protein complement(3879310..3881397) Shewanella sp. ANA-3 4477344 YP_870866.1 CDS Shewana3_3236 NC_008577.1 3881646 3882521 D TIGRFAM: TonB family protein; KEGG: son:SO3670 TonB1 protein; TonB family protein 3881646..3882521 Shewanella sp. ANA-3 4477345 YP_870867.1 CDS Shewana3_3237 NC_008577.1 3882611 3883342 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: son:SO3671 TonB system transport protein ExbB1; MotA/TolQ/ExbB proton channel 3882611..3883342 Shewanella sp. ANA-3 4477346 YP_870868.1 CDS Shewana3_3238 NC_008577.1 3883339 3883776 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO3672 TonB system transport protein ExbD1; biopolymer transport protein ExbD/TolR 3883339..3883776 Shewanella sp. ANA-3 4477347 YP_870869.1 CDS Shewana3_3239 NC_008577.1 3883869 3884789 D PFAM: periplasmic binding protein; KEGG: son:SO3673 hemin ABC transporter, periplasmic hemin-binding protein; periplasmic binding protein 3883869..3884789 Shewanella sp. ANA-3 4477348 YP_870870.1 CDS Shewana3_3240 NC_008577.1 3884808 3885824 D PFAM: transport system permease protein; KEGG: son:SO3674 hemin ABC transporter, permease protein; transport system permease 3884808..3885824 Shewanella sp. ANA-3 4477349 YP_870871.1 CDS hmuV NC_008577.1 3885836 3886654 D with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 3885836..3886654 Shewanella sp. ANA-3 4477350 YP_870872.1 CDS Shewana3_3242 NC_008577.1 3886737 3887078 D KEGG: son:SO3676 hypothetical protein; hypothetical protein 3886737..3887078 Shewanella sp. ANA-3 4477351 YP_870873.1 CDS Shewana3_3243 NC_008577.1 3887075 3887440 R KEGG: son:SO3677 hypothetical protein; hypothetical protein complement(3887075..3887440) Shewanella sp. ANA-3 4477352 YP_870874.1 CDS Shewana3_3244 NC_008577.1 3887552 3889027 R PFAM: FAD dependent oxidoreductase; KEGG: son:SO3678 hypothetical protein; FAD dependent oxidoreductase complement(3887552..3889027) Shewanella sp. ANA-3 4477353 YP_870875.1 CDS Shewana3_3245 NC_008577.1 3889024 3889359 R KEGG: son:SO3679 hypothetical protein; hypothetical protein complement(3889024..3889359) Shewanella sp. ANA-3 4477354 YP_870876.1 CDS Shewana3_3246 NC_008577.1 3889558 3890109 D PFAM: protein of unknown function DUF924; KEGG: ilo:IL1577 hypothetical protein; hypothetical protein 3889558..3890109 Shewanella sp. ANA-3 4477355 YP_870877.1 CDS Shewana3_3247 NC_008577.1 3890234 3891091 D SMART: extracellular solute-binding protein, family 3; KEGG: mag:amb0186 ABC-type amino acid transport/signal transduction systems; extracellular solute-binding protein 3890234..3891091 Shewanella sp. ANA-3 4477356 YP_870878.1 CDS Shewana3_3248 NC_008577.1 3891094 3891543 R PFAM: UspA domain protein; KEGG: son:SO3680 universal stress protein family; UspA domain-containing protein complement(3891094..3891543) Shewanella sp. ANA-3 4477357 YP_870879.1 CDS Shewana3_3249 NC_008577.1 3891694 3892125 R PFAM: UspA domain protein; KEGG: son:SO3681 universal stress protein family; UspA domain-containing protein complement(3891694..3892125) Shewanella sp. ANA-3 4477358 YP_870880.1 CDS Shewana3_3250 NC_008577.1 3892145 3892543 R KEGG: son:SO3682 hypothetical protein; hypothetical protein complement(3892145..3892543) Shewanella sp. ANA-3 4477359 YP_870881.1 CDS Shewana3_3251 NC_008577.1 3892741 3894165 D PFAM: aldehyde dehydrogenase; KEGG: son:SO3683 coniferyl aldehyde dehydrogenase; aldehyde dehydrogenase 3892741..3894165 Shewanella sp. ANA-3 4477360 YP_870882.1 CDS Shewana3_3252 NC_008577.1 3894187 3894789 D PFAM: regulatory protein, TetR; KEGG: son:SO3684 transcriptional regulator, TetR family; TetR family transcriptional regulator 3894187..3894789 Shewanella sp. ANA-3 4477361 YP_870883.1 CDS Shewana3_3253 NC_008577.1 3894848 3895654 R PFAM: Curli production assembly/transport component CsgG; KEGG: son:SO3685 curli production assembly/transport component CsgG, putative; curli production assembly/transport component CsgG complement(3894848..3895654) Shewanella sp. ANA-3 4477362 YP_870884.1 CDS Shewana3_3254 NC_008577.1 3895654 3896049 R KEGG: son:SO3686 curli production assembly/transport component CsgF, putative; curli production assembly/transport component CsgF complement(3895654..3896049) Shewanella sp. ANA-3 4477363 YP_870885.1 CDS Shewana3_3255 NC_008577.1 3896060 3896470 R KEGG: son:SO3687 curli production assembly/transport component CsgE, putative; curli production assembly/transport component CsgE complement(3896060..3896470) Shewanella sp. ANA-3 4477364 YP_870886.1 CDS Shewana3_3256 NC_008577.1 3896703 3898358 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO3688 nitrogen regulation protein NtrY, putative; ATPase domain-containing protein complement(3896703..3898358) Shewanella sp. ANA-3 4477365 YP_870887.1 CDS Shewana3_3257 NC_008577.1 3898399 3899835 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: son:SO3689 sigma-54 dependent nitrogen response regulator; two component, sigma54 specific, Fis family transcriptional regulator complement(3898399..3899835) Shewanella sp. ANA-3 4477366 YP_870888.1 CDS Shewana3_3258 NC_008577.1 3899932 3901131 R PFAM: protein of unknown function DUF214; KEGG: son:SO3690 ABC transporter, permease protein; hypothetical protein complement(3899932..3901131) Shewanella sp. ANA-3 4477367 YP_870889.1 CDS Shewana3_3259 NC_008577.1 3901143 3902447 R PFAM: protein of unknown function DUF214; KEGG: xcb:XC_3666 ABC transporter ATP-binding protein; hypothetical protein complement(3901143..3902447) Shewanella sp. ANA-3 4477368 YP_870890.1 CDS Shewana3_3260 NC_008577.1 3902456 3903196 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3692 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(3902456..3903196) Shewanella sp. ANA-3 4477369 YP_870891.1 CDS Shewana3_3261 NC_008577.1 3903292 3903663 R KEGG: son:SO3693 hypothetical protein; hypothetical protein complement(3903292..3903663) Shewanella sp. ANA-3 4477370 YP_870892.1 CDS Shewana3_3262 NC_008577.1 3903663 3904925 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO3694 HlyD family secretion protein; RND family efflux transporter MFP subunit complement(3903663..3904925) Shewanella sp. ANA-3 4477371 YP_870893.1 CDS Shewana3_3263 NC_008577.1 3905284 3906327 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 3905284..3906327 Shewanella sp. ANA-3 4477372 YP_870894.1 CDS Shewana3_3264 NC_008577.1 3906464 3907510 D KEGG: son:SO3696 hypothetical protein; hypothetical protein 3906464..3907510 Shewanella sp. ANA-3 4477373 YP_870895.1 CDS Shewana3_3265 NC_008577.1 3907665 3908021 D PFAM: protein of unknown function DUF1486; KEGG: son:SO3697 steroid delta-isomerase domain protein; hypothetical protein 3907665..3908021 Shewanella sp. ANA-3 4477374 YP_870896.1 CDS Shewana3_3266 NC_008577.1 3908278 3908571 D KEGG: son:SO3699.1 hypothetical protein; hypothetical protein 3908278..3908571 Shewanella sp. ANA-3 4477375 YP_870897.1 CDS Shewana3_3267 NC_008577.1 3909407 3909631 R KEGG: son:SO3704 hypothetical protein; hypothetical protein complement(3909407..3909631) Shewanella sp. ANA-3 4477376 YP_870898.1 CDS Shewana3_3268 NC_008577.1 3910168 3910290 R KEGG: vvu:VV12513 hypothetical protein; hypothetical protein complement(3910168..3910290) Shewanella sp. ANA-3 4477377 YP_870899.1 CDS Shewana3_3269 NC_008577.1 3910344 3910727 R KEGG: son:SO3708 hypothetical protein; hypothetical protein complement(3910344..3910727) Shewanella sp. ANA-3 4477378 YP_870900.1 CDS Shewana3_3270 NC_008577.1 3910772 3911167 R PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_06484 histone acetyltransferase HPA2/related acetyltransferase; N-acetyltransferase GCN5 complement(3910772..3911167) Shewanella sp. ANA-3 4477379 YP_870901.1 CDS Shewana3_3271 NC_008577.1 3911178 3911732 R KEGG: sde:Sde_1847 cell division protein ZipA; cell division protein ZipA complement(3911178..3911732) Shewanella sp. ANA-3 4477380 YP_870902.1 CDS Shewana3_3272 NC_008577.1 3911804 3912628 R PFAM: periplasmic binding protein; KEGG: son:SO3709 ABC transporter, periplasmic substrate-binding protein, putative; periplasmic binding protein complement(3911804..3912628) Shewanella sp. ANA-3 4477381 YP_870903.1 CDS Shewana3_3273 NC_008577.1 3912644 3913681 R KEGG: son:SO3711 hypothetical protein; hypothetical protein complement(3912644..3913681) Shewanella sp. ANA-3 4477382 YP_870904.1 CDS Shewana3_3274 NC_008577.1 3913830 3914465 R catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase complement(3913830..3914465) Shewanella sp. ANA-3 4477383 YP_870905.1 CDS Shewana3_3275 NC_008577.1 3914494 3916119 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(3914494..3916119) Shewanella sp. ANA-3 4477384 YP_870906.1 CDS Shewana3_3276 NC_008577.1 3916207 3916809 R PFAM: cobalbumin biosynthesis enzyme; KEGG: son:SO1037 cobinamide kinase/cobinamide phosphate guanylyltransferase; adenosylcobinamide kinase complement(3916207..3916809) Shewanella sp. ANA-3 4477385 YP_870907.1 CDS cobS NC_008577.1 3916806 3917594 R catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase complement(3916806..3917594) Shewanella sp. ANA-3 4477386 YP_870908.1 CDS cobT NC_008577.1 3917691 3918743 R catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(3917691..3918743) Shewanella sp. ANA-3 4477387 YP_870909.1 CDS Shewana3_3279 NC_008577.1 3918906 3920051 R PFAM: transport system permease protein; KEGG: son:SO1034 iron-compound ABC transporter, permease protein; transport system permease complement(3918906..3920051) Shewanella sp. ANA-3 4477388 YP_870910.1 CDS Shewana3_3280 NC_008577.1 3920048 3921028 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO1033 iron-compound ABC transporter, ATP-binding protein, putative; ABC transporter-like protein complement(3920048..3921028) Shewanella sp. ANA-3 4477389 YP_870911.1 CDS Shewana3_3281 NC_008577.1 3921501 3922223 R PFAM: Phosphoglycerate mutase; KEGG: son:SO1031 alpha-ribazole-5'-phosphate phosphatase, putative; phosphoglycerate mutase complement(3921501..3922223) Shewanella sp. ANA-3 4477390 YP_870912.1 CDS metH NC_008577.1 3922433 3926167 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 3922433..3926167 Shewanella sp. ANA-3 4477391 YP_870913.1 CDS Shewana3_3283 NC_008577.1 3926707 3927225 R hypothetical protein complement(3926707..3927225) Shewanella sp. ANA-3 4477392 YP_870914.1 CDS Shewana3_3284 NC_008577.1 3927222 3927902 R hypothetical protein complement(3927222..3927902) Shewanella sp. ANA-3 4477393 YP_870915.1 CDS Shewana3_3285 NC_008577.1 3927910 3928653 R hypothetical protein complement(3927910..3928653) Shewanella sp. ANA-3 4477394 YP_870916.1 CDS Shewana3_3286 NC_008577.1 3930179 3931141 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: dienelactone hydrolase; KEGG: son:SO1006 dienelactone hydrolase family protein; dienelactone hydrolase complement(3930179..3931141) Shewanella sp. ANA-3 4477395 YP_870917.1 CDS Shewana3_3287 NC_008577.1 3931413 3933701 D KEGG: son:SO1004 hypothetical protein; hypothetical protein 3931413..3933701 Shewanella sp. ANA-3 4477396 YP_870918.1 CDS Shewana3_3288 NC_008577.1 3933711 3935444 D PFAM: MORN variant repeat protein; KEGG: son:SO1003 hypothetical protein; MORN repeat-containing protein 3933711..3935444 Shewanella sp. ANA-3 4477397 YP_870919.1 CDS Shewana3_3289 NC_008577.1 3935604 3937916 D PFAM: MORN variant repeat protein; KEGG: son:SO1002 hypothetical protein; MORN repeat-containing protein 3935604..3937916 Shewanella sp. ANA-3 4477398 YP_870920.1 CDS Shewana3_3290 NC_008577.1 3938127 3939224 D PFAM: sodium/calcium exchanger membrane region; KEGG: son:SO1001 calcium/proton antiporter; sodium/calcium exchanger membrane region 3938127..3939224 Shewanella sp. ANA-3 4477399 YP_870921.1 CDS Shewana3_3291 NC_008577.1 3939266 3940843 R PFAM: Rhomboid family protein; KEGG: son:SO1000 rhomboid family protein; rhomboid family protein complement(3939266..3940843) Shewanella sp. ANA-3 4477400 YP_870922.1 CDS pbpG NC_008577.1 3941032 3941988 R specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase complement(3941032..3941988) Shewanella sp. ANA-3 4477401 YP_870923.1 CDS Shewana3_3293 NC_008577.1 3942279 3943205 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0997 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3942279..3943205) Shewanella sp. ANA-3 4477402 YP_870924.1 CDS Shewana3_3294 NC_008577.1 3943374 3943877 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO0996 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 3943374..3943877 Shewanella sp. ANA-3 4477403 YP_870925.1 CDS Shewana3_3295 NC_008577.1 3944269 3944712 D KEGG: son:SO0994 hypothetical protein; hypothetical protein 3944269..3944712 Shewanella sp. ANA-3 4477404 YP_870926.1 CDS lysS NC_008577.1 3944815 3946317 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(3944815..3946317) Shewanella sp. ANA-3 4477597 YP_870927.1 CDS Shewana3_3297 NC_008577.1 3946347 3947405 R TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: stm:STM3041c peptide chain release factor 2; peptide chain release factor 2 complement(3946347..3947405) Shewanella sp. ANA-3 4477598 YP_870928.1 CDS Shewana3_3298 NC_008577.1 3947973 3952271 D TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO0988 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 3947973..3952271 Shewanella sp. ANA-3 4477599 YP_870929.1 CDS Shewana3_3299 NC_008577.1 3952386 3954050 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: son:SO0987 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(3952386..3954050) Shewanella sp. ANA-3 4477600 YP_870930.1 CDS Shewana3_3300 NC_008577.1 3954186 3955358 R KEGG: son:SO0986 chromate transporter, putative; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; chromate transporter complement(3954186..3955358) Shewanella sp. ANA-3 4477601 YP_870931.1 CDS Shewana3_3301 NC_008577.1 3955522 3960531 R PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; proteinase inhibitor I9, subtilisin propeptide; KEGG: son:SO4539 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin complement(3955522..3960531) Shewanella sp. ANA-3 4477602 YP_870932.1 CDS Shewana3_3302 NC_008577.1 3960558 3960950 D KEGG: pst:PSPTO4510 ISPsy11, transposase OrfA; ISPsy11, transposase OrfA 3960558..3960950 Shewanella sp. ANA-3 4477603 YP_870933.1 CDS Shewana3_3303 NC_008577.1 3961055 3961774 D PFAM: Integrase, catalytic region; KEGG: pfo:Pfl_2131 integrase, catalytic region; integrase catalytic subunit 3961055..3961774 Shewanella sp. ANA-3 4477604 YP_870934.1 CDS Shewana3_3304 NC_008577.1 3962449 3967569 R PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: son:SO4539 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin complement(3962449..3967569) Shewanella sp. ANA-3 4477605 YP_870935.1 CDS Shewana3_3305 NC_008577.1 3967862 3968704 D PFAM: MltA-interacting MipA family protein; KEGG: son:SO3592 putative outer membrane protein; MltA-interacting MipA family protein 3967862..3968704 Shewanella sp. ANA-3 4477606 YP_870936.1 CDS Shewana3_3306 NC_008577.1 3968694 3969113 D hypothetical protein 3968694..3969113 Shewanella sp. ANA-3 4477607 YP_870937.1 CDS Shewana3_3307 NC_008577.1 3969110 3969832 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pha:PSHAa0853 response regulator (activator) in two-component regulatory; two component transcriptional regulator 3969110..3969832 Shewanella sp. ANA-3 4477608 YP_870938.1 CDS Shewana3_3308 NC_008577.1 3969838 3971067 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO0981 sensor histidine kinase; ATPase domain-containing protein 3969838..3971067 Shewanella sp. ANA-3 4477609 YP_870939.1 CDS rumB NC_008577.1 3971082 3972236 R RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase complement(3971082..3972236) Shewanella sp. ANA-3 4477610 YP_870940.1 CDS Shewana3_3310 NC_008577.1 3972415 3973605 R PFAM: FAD dependent oxidoreductase; KEGG: son:SO0978 glycerol-3-phosphate dehydrogenase; FAD dependent oxidoreductase complement(3972415..3973605) Shewanella sp. ANA-3 4477611 YP_870941.1 CDS Shewana3_3311 NC_008577.1 3973671 3974168 R PFAM: regulatory protein, MarR; KEGG: son:SO0977 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(3973671..3974168) Shewanella sp. ANA-3 4477612 YP_870942.1 CDS Shewana3_3312 NC_008577.1 3974298 3974723 D PFAM: OsmC family protein; KEGG: son:SO0976 organic hydroperoxide resistance protein; OsmC family protein 3974298..3974723 Shewanella sp. ANA-3 4477613 YP_870943.1 CDS Shewana3_3313 NC_008577.1 3974950 3976374 D KEGG: son:SO0975 hypothetical protein; hypothetical protein 3974950..3976374 Shewanella sp. ANA-3 4477614 YP_870944.1 CDS Shewana3_3314 NC_008577.1 3976473 3976658 D KEGG: son:SO0974 hypothetical protein; hypothetical protein 3976473..3976658 Shewanella sp. ANA-3 4477615 YP_870945.1 CDS Shewana3_3315 NC_008577.1 3976789 3977079 R KEGG: son:SO0973 hypothetical protein; hypothetical protein complement(3976789..3977079) Shewanella sp. ANA-3 4477616 YP_870946.1 CDS Shewana3_3316 NC_008577.1 3977140 3977664 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO0972 hypothetical protein; type 12 methyltransferase complement(3977140..3977664) Shewanella sp. ANA-3 4477617 YP_870947.1 CDS Shewana3_3317 NC_008577.1 3977661 3978071 R KEGG: son:SO0971 hypothetical protein; hypothetical protein complement(3977661..3978071) Shewanella sp. ANA-3 4477618 YP_870948.1 CDS Shewana3_3318 NC_008577.1 3978575 3980365 D TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0970 fumarate reductase flavoprotein subunit precursor; flavocytochrome c 3978575..3980365 Shewanella sp. ANA-3 4477619 YP_870949.1 CDS Shewana3_3319 NC_008577.1 3980612 3981601 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: son:SO0968 D-lactate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 3980612..3981601 Shewanella sp. ANA-3 4477620 YP_870950.1 CDS Shewana3_3320 NC_008577.1 3981669 3982406 D PFAM: dienelactone hydrolase; KEGG: pha:PSHAa2188 hydrolase; dienelactone hydrolase 3981669..3982406 Shewanella sp. ANA-3 4477621 YP_870951.1 CDS Shewana3_3321 NC_008577.1 3982516 3983043 R KEGG: son:SO0962 hypothetical protein; hypothetical protein complement(3982516..3983043) Shewanella sp. ANA-3 4477622 YP_870952.1 CDS Shewana3_3322 NC_008577.1 3983290 3983835 R KEGG: son:SO0961 hypothetical protein; hypothetical protein complement(3983290..3983835) Shewanella sp. ANA-3 4477623 YP_870953.1 CDS Shewana3_3323 NC_008577.1 3983936 3984679 D PFAM: Spermine synthase; KEGG: son:SO0960 hypothetical spermidine synthase; spermine synthase 3983936..3984679 Shewanella sp. ANA-3 4477624 YP_870954.1 CDS Shewana3_3324 NC_008577.1 3984769 3986304 D PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: son:SO0959 cytosol aminopeptidase; peptidase M17, leucyl aminopeptidase domain-containing protein 3984769..3986304 Shewanella sp. ANA-3 4477625 YP_870955.1 CDS Shewana3_3325 NC_008577.1 3986628 3987197 D PFAM: alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen; Redoxin domain protein; KEGG: son:SO0958 alkyl hydroperoxide reductase, C subunit; alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen 3986628..3987197 Shewanella sp. ANA-3 4477626 YP_870956.1 CDS Shewana3_3326 NC_008577.1 3987431 3989008 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO0956 alkyl hydroperoxide reductase, F subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3987431..3989008 Shewanella sp. ANA-3 4477627 YP_870957.1 CDS Shewana3_3327 NC_008577.1 3989082 3989501 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0954 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(3989082..3989501) Shewanella sp. ANA-3 4477628 YP_870958.1 CDS Shewana3_3328 NC_008577.1 3989515 3989844 R KEGG: son:SO0953 hypothetical protein; hypothetical protein complement(3989515..3989844) Shewanella sp. ANA-3 4477629 YP_870959.1 CDS Shewana3_3329 NC_008577.1 3989883 3991607 R TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: son:SO0952 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ complement(3989883..3991607) Shewanella sp. ANA-3 4477630 YP_870960.1 CDS Shewana3_3330 NC_008577.1 3991700 3992425 R KEGG: son:SO0951 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC complement(3991700..3992425) Shewanella sp. ANA-3 4477631 YP_870961.1 CDS Shewana3_3331 NC_008577.1 3992576 3993478 R TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: son:SO0950 integrase/recombinase XerD; tyrosine recombinase XerD complement(3992576..3993478) Shewanella sp. ANA-3 4477632 YP_870962.1 CDS Shewana3_3332 NC_008577.1 3993560 3994963 R PFAM: branched-chain amino acid transport system II carrier protein; KEGG: son:SO0949 branched-chain amino acid transport system II carrier protein BrnQ; branched-chain amino acid transport system II carrier protein complement(3993560..3994963) Shewanella sp. ANA-3 4477633 YP_870963.1 CDS Shewana3_3333 NC_008577.1 3995499 3996224 D PFAM: methyltransferase small; KEGG: son:SO0948 hypothetical protein; methyltransferase small 3995499..3996224 Shewanella sp. ANA-3 4477634 YP_870964.1 CDS Shewana3_3334 NC_008577.1 3996281 3997276 R PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: pha:PSHAa1150 response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase); response regulator receiver modulated metal dependent phosphohydrolase complement(3996281..3997276) Shewanella sp. ANA-3 4477635 YP_870965.1 CDS Shewana3_3335 NC_008577.1 3997279 4000647 R KEGG: pha:PSHAa1151 two-component member protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; MHYT domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase complement(3997279..4000647) Shewanella sp. ANA-3 4477636 YP_870966.1 CDS Shewana3_3336 NC_008577.1 4001048 4002307 D facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 4001048..4002307 Shewanella sp. ANA-3 4477637 YP_870967.1 CDS Shewana3_3337 NC_008577.1 4002575 4003792 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO0946 hypothetical protein; RND family efflux transporter MFP subunit 4002575..4003792 Shewanella sp. ANA-3 4477638 YP_870968.1 CDS Shewana3_3338 NC_008577.1 4003792 4006995 D PFAM: acriflavin resistance protein; KEGG: son:SO0945 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 4003792..4006995 Shewanella sp. ANA-3 4477639 YP_870969.1 CDS Shewana3_3339 NC_008577.1 4007172 4007891 D PFAM: Radical SAM domain protein; KEGG: son:SO0944 hypothetical protein; radical SAM domain-containing protein 4007172..4007891 Shewanella sp. ANA-3 4477640 YP_870970.1 CDS Shewana3_3340 NC_008577.1 4008025 4010259 D TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; KEGG: son:SO0943 sensory box protein, putative; putative PAS/PAC sensor protein 4008025..4010259 Shewanella sp. ANA-3 4477641 YP_870971.1 CDS Shewana3_3341 NC_008577.1 4010243 4011640 R KEGG: son:SO0942 hypothetical protein; hypothetical protein complement(4010243..4011640) Shewanella sp. ANA-3 4477642 YP_870972.1 CDS Shewana3_3342 NC_008577.1 4011725 4012255 R KEGG: son:SO0941 hypothetical protein; hypothetical protein complement(4011725..4012255) Shewanella sp. ANA-3 4477643 YP_870973.1 CDS Shewana3_3343 NC_008577.1 4012248 4012991 R PFAM: transcriptional regulator domain protein; KEGG: son:SO0940 transcriptional regulator-related protein; lysine decarboxylase transcriptional regulator CadC complement(4012248..4012991) Shewanella sp. ANA-3 4477644 YP_870974.1 CDS Shewana3_3344 NC_008577.1 4013434 4014258 D KEGG: son:SO0939 cytochrome c, putative; cytochrome c 4013434..4014258 Shewanella sp. ANA-3 4477645 YP_870975.1 CDS Shewana3_3345 NC_008577.1 4014269 4014793 D KEGG: son:SO0938 hypothetical protein; hypothetical protein 4014269..4014793 Shewanella sp. ANA-3 4477646 YP_870976.1 CDS Shewana3_3346 NC_008577.1 4014861 4015409 R KEGG: son:SO0937 hypothetical protein; hypothetical protein complement(4014861..4015409) Shewanella sp. ANA-3 4477647 YP_870977.1 CDS Shewana3_3347 NC_008577.1 4015402 4016151 R PFAM: transcriptional regulator domain protein; KEGG: son:SO0936 transcriptional regulator; transcriptional regulator complement(4015402..4016151) Shewanella sp. ANA-3 4477648 YP_870978.1 CDS Shewana3_3348 NC_008577.1 4016318 4017787 R KEGG: son:SO0935 Na+/H+ antiporter; Na+/H+ antiporter complement(4016318..4017787) Shewanella sp. ANA-3 4477649 YP_870979.1 CDS Shewana3_3349 NC_008577.1 4018028 4018765 R PFAM: protein of unknown function DUF481; KEGG: son:SO0934 hypothetical protein; hypothetical protein complement(4018028..4018765) Shewanella sp. ANA-3 4477650 YP_870980.1 CDS Shewana3_3350 NC_008577.1 4018903 4019970 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase complement(4018903..4019970) Shewanella sp. ANA-3 4477651 YP_870981.1 CDS pgk NC_008577.1 4020170 4021345 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(4020170..4021345) Shewanella sp. ANA-3 4477652 YP_870982.1 CDS Shewana3_3352 NC_008577.1 4021478 4022494 R NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase complement(4021478..4022494) Shewanella sp. ANA-3 4477653 YP_870983.1 CDS Shewana3_3353 NC_008577.1 4022623 4024617 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(4022623..4024617) Shewanella sp. ANA-3 4477654 YP_870984.1 CDS Shewana3_3354 NC_008577.1 4025097 4026248 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 4025097..4026248 Shewanella sp. ANA-3 4477655 YP_870985.1 CDS Shewana3_3355 NC_008577.1 4026380 4026829 D hypothetical protein 4026380..4026829 Shewanella sp. ANA-3 4477656 YP_870986.1 CDS Shewana3_3356 NC_008577.1 4026836 4027177 R KEGG: son:SO0927 hypothetical protein; hypothetical protein complement(4026836..4027177) Shewanella sp. ANA-3 4477657 YP_870987.1 CDS Shewana3_3357 NC_008577.1 4027170 4029002 R PFAM: EAL domain protein; KEGG: vvu:VV13056 FOG: EAL domain; diguanylate phosphodiesterase complement(4027170..4029002) Shewanella sp. ANA-3 4477658 YP_870988.1 CDS Shewana3_3358 NC_008577.1 4029302 4029850 R KEGG: son:SO0926 acetyltransferase, GNAT family; acetyltransferase complement(4029302..4029850) Shewanella sp. ANA-3 4477659 YP_870989.1 CDS Shewana3_3359 NC_008577.1 4030024 4031037 D KEGG: son:SO0925 GGDEF domain protein; diguanylate cyclase 4030024..4031037 Shewanella sp. ANA-3 4477660 YP_870990.1 CDS Shewana3_3360 NC_008577.1 4031051 4031284 R KEGG: son:SO0924 hypothetical protein; hypothetical protein complement(4031051..4031284) Shewanella sp. ANA-3 4477661 YP_870991.1 CDS Shewana3_3361 NC_008577.1 4031355 4031771 D PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: son:SO0923 hypothetical protein; hypothetical protein 4031355..4031771 Shewanella sp. ANA-3 4477662 YP_870992.1 CDS Shewana3_3362 NC_008577.1 4031827 4033149 R PFAM: sodium:dicarboxylate symporter; KEGG: son:SO0922 proton/glutamate symporter; sodium:dicarboxylate symporter complement(4031827..4033149) Shewanella sp. ANA-3 4477663 YP_870993.1 CDS Shewana3_3363 NC_008577.1 4033311 4033607 R KEGG: son:SO0921 hypothetical protein; hypothetical protein complement(4033311..4033607) Shewanella sp. ANA-3 4477664 YP_870994.1 CDS Shewana3_3364 NC_008577.1 4033828 4034271 D PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0920 acetyltransferase, GNAT family; N-acetyltransferase GCN5 4033828..4034271 Shewanella sp. ANA-3 4477665 YP_870995.1 CDS Shewana3_3365 NC_008577.1 4034331 4035623 R KEGG: son:SO0919 serine transporter, putative; serine transporter complement(4034331..4035623) Shewanella sp. ANA-3 4477666 YP_870996.1 CDS Shewana3_3366 NC_008577.1 4036067 4038634 R PFAM: peptidase S45, penicillin amidase; KEGG: son:SO0918 aculeacin A acylase; methyl-accepting chemotaxis sensory transducer complement(4036067..4038634) Shewanella sp. ANA-3 4478499 YP_870997.1 CDS Shewana3_3367 NC_008577.1 4038890 4039429 D pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 4038890..4039429 Shewanella sp. ANA-3 4478500 YP_870998.1 CDS Shewana3_3368 NC_008577.1 4039495 4040517 D PFAM: GCN5-related N-acetyltransferase; regulatory protein, MarR; KEGG: son:SO0916 putative acetyltransferase; MarR family transcriptional regulator 4039495..4040517 Shewanella sp. ANA-3 4478501 YP_870999.1 CDS Shewana3_3369 NC_008577.1 4040739 4041932 R PFAM: beta-lactamase; KEGG: son:SO0914 hypothetical protein; beta-lactamase complement(4040739..4041932) Shewanella sp. ANA-3 4478502 YP_871000.1 CDS Shewana3_3370 NC_008577.1 4042053 4042370 R hypothetical protein complement(4042053..4042370) Shewanella sp. ANA-3 4478503 YP_871001.1 CDS Shewana3_3371 NC_008577.1 4042959 4043522 D KEGG: son:SO0909 hypothetical protein; hypothetical protein 4042959..4043522 Shewanella sp. ANA-3 4478504 YP_871002.1 CDS Shewana3_3373 NC_008577.1 4043980 4045197 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F complement(4043980..4045197) Shewanella sp. ANA-3 4478506 YP_871003.1 CDS Shewana3_3374 NC_008577.1 4045249 4045857 R Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E complement(4045249..4045857) Shewanella sp. ANA-3 4478507 YP_871004.1 CDS Shewana3_3375 NC_008577.1 4045867 4046487 R Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D complement(4045867..4046487) Shewanella sp. ANA-3 4478508 YP_871005.1 CDS Shewana3_3376 NC_008577.1 4046484 4047278 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C complement(4046484..4047278) Shewanella sp. ANA-3 4478509 YP_871006.1 CDS Shewana3_3377 NC_008577.1 4047268 4048482 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B complement(4047268..4048482) Shewanella sp. ANA-3 4478510 YP_871007.1 CDS Shewana3_3378 NC_008577.1 4048482 4049852 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A complement(4048482..4049852) Shewanella sp. ANA-3 4478511 YP_871008.1 CDS Shewana3_3379 NC_008577.1 4050318 4051358 D PFAM: aldo/keto reductase; KEGG: son:SO0900 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 4050318..4051358 Shewanella sp. ANA-3 4478512 YP_871009.1 CDS Shewana3_3380 NC_008577.1 4051539 4051961 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO0899 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 4051539..4051961 Shewanella sp. ANA-3 4478513 YP_871010.1 CDS Shewana3_3381 NC_008577.1 4052137 4052664 D PFAM: protein of unknown function UPF0167; KEGG: son:SO0898 hypothetical protein; hypothetical protein 4052137..4052664 Shewanella sp. ANA-3 4478514 YP_871011.1 CDS Shewana3_3382 NC_008577.1 4052865 4053155 D hypothetical protein 4052865..4053155 Shewanella sp. ANA-3 4478515 YP_871012.1 CDS Shewana3_3383 NC_008577.1 4053213 4055489 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pha:PSHAa1415 outer membrane protein; TonB-dependent receptor, plug 4053213..4055489 Shewanella sp. ANA-3 4476726 YP_871013.1 CDS Shewana3_3384 NC_008577.1 4055553 4056992 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(4055553..4056992) Shewanella sp. ANA-3 4476727 YP_871014.1 CDS Shewana3_3385 NC_008577.1 4057419 4058276 R PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: son:SO0895 pirin family protein; hypoxanthine phosphoribosyltransferase complement(4057419..4058276) Shewanella sp. ANA-3 4476728 YP_871015.1 CDS Shewana3_3386 NC_008577.1 4058736 4058843 D KEGG: son:SO0729 hypothetical protein; hypothetical protein 4058736..4058843 Shewanella sp. ANA-3 4476729 YP_871016.1 CDS Shewana3_3387 NC_008577.1 4058954 4059406 R KEGG: cvi:CV1058 hypothetical protein; hypothetical protein complement(4058954..4059406) Shewanella sp. ANA-3 4476730 YP_871017.1 CDS Shewana3_3388 NC_008577.1 4059497 4059850 R KEGG: rba:RB954 hypothetical protein; hypothetical protein complement(4059497..4059850) Shewanella sp. ANA-3 4476731 YP_871018.1 CDS Shewana3_3389 NC_008577.1 4059938 4060219 R KEGG: cps:CPS_3502 putative lipoprotein; putative lipoprotein complement(4059938..4060219) Shewanella sp. ANA-3 4476732 YP_871019.1 CDS Shewana3_3390 NC_008577.1 4060301 4060774 R KEGG: sde:Sde_3062 hypothetical protein; hypothetical protein complement(4060301..4060774) Shewanella sp. ANA-3 4476733 YP_871020.1 CDS Shewana3_3391 NC_008577.1 4060832 4061092 R hypothetical protein complement(4060832..4061092) Shewanella sp. ANA-3 4476734 YP_871021.1 CDS Shewana3_3392 NC_008577.1 4061778 4061978 R TIGRFAM: conserved hypothetical protein; KEGG: son:SO0886 hypothetical protein; hypothetical protein complement(4061778..4061978) Shewanella sp. ANA-3 4476735 YP_871022.1 CDS Shewana3_3393 NC_008577.1 4062366 4064279 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0885 ABC transporter, ATP-binding protein; ABC transporter-like protein 4062366..4064279 Shewanella sp. ANA-3 4476736 YP_871023.1 CDS Shewana3_3394 NC_008577.1 4064315 4064776 D TIGRFAM: conserved hypothetical protein; KEGG: son:SO0884 hypothetical protein; hypothetical protein 4064315..4064776 Shewanella sp. ANA-3 4476737 YP_871024.1 CDS Shewana3_3395 NC_008577.1 4064788 4065198 R PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: son:SO0883 hypothetical protein; glutathione-dependent formaldehyde-activating protein complement(4064788..4065198) Shewanella sp. ANA-3 4476738 YP_871025.1 CDS Shewana3_3396 NC_008577.1 4065211 4066812 R PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: son:SO0882 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase complement(4065211..4066812) Shewanella sp. ANA-3 4476739 YP_871026.1 CDS Shewana3_3397 NC_008577.1 4066859 4067365 R KEGG: son:SO0881 hypothetical protein; hypothetical protein complement(4066859..4067365) Shewanella sp. ANA-3 4476740 YP_871027.1 CDS Shewana3_3398 NC_008577.1 4067477 4068460 D PFAM: alpha/beta hydrolase fold; KEGG: son:SO0880 hypothetical protein; alpha/beta hydrolase fold domain-containing protein 4067477..4068460 Shewanella sp. ANA-3 4476741 YP_871028.1 CDS Shewana3_3399 NC_008577.1 4068470 4068715 D KEGG: son:SO0879 hypothetical protein; hypothetical protein 4068470..4068715 Shewanella sp. ANA-3 4476742 YP_871029.1 CDS Shewana3_3400 NC_008577.1 4068804 4069691 D PFAM: phosphoribulokinase/uridine kinase; KEGG: son:SO0878 phosphoribulokinase; phosphoribulokinase/uridine kinase 4068804..4069691 Shewanella sp. ANA-3 4476743 YP_871030.1 CDS Shewana3_3401 NC_008577.1 4070045 4070557 R PFAM: GCN5-related N-acetyltransferase; KEGG: son:SO0877 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(4070045..4070557) Shewanella sp. ANA-3 4476744 YP_871031.1 CDS Shewana3_3402 NC_008577.1 4070769 4072061 R catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B complement(4070769..4072061) Shewanella sp. ANA-3 4476745 YP_871032.1 CDS Shewana3_3403 NC_008577.1 4072293 4072997 D Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 4072293..4072997 Shewanella sp. ANA-3 4476746 YP_871033.1 CDS Shewana3_3404 NC_008577.1 4073160 4073603 D TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: son:SO0874 DnaK suppressor protein; TraR/DksA family transcriptional regulator 4073160..4073603 Shewanella sp. ANA-3 4476747 YP_871034.1 CDS Shewana3_3405 NC_008577.1 4073739 4074638 D PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: son:SO0873 glutamyl-tRNA synthetase domain protein; glutamyl-tRNA synthetase 4073739..4074638 Shewanella sp. ANA-3 4476748 YP_871035.1 CDS Shewana3_3406 NC_008577.1 4074921 4076228 D TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: son:SO0872 tRNA nucleotidyltransferase (CCA-adding enzyme); poly(A) polymerase 4074921..4076228 Shewanella sp. ANA-3 4476749 YP_871036.1 CDS Shewana3_3407 NC_008577.1 4076228 4076716 D TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: son:SO0871 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 4076228..4076716 Shewanella sp. ANA-3 4476750 YP_871037.1 CDS panB NC_008577.1 4076773 4077567 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 4076773..4077567 Shewanella sp. ANA-3 4476751 YP_871038.1 CDS panC NC_008577.1 4077644 4078489 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 4077644..4078489 Shewanella sp. ANA-3 4476752 YP_871039.1 CDS Shewana3_3410 NC_008577.1 4078781 4079302 D KEGG: son:SO0868 hypothetical protein; hypothetical protein 4078781..4079302 Shewanella sp. ANA-3 4476753 YP_871040.1 CDS Shewana3_3411 NC_008577.1 4079364 4081871 R PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; PKD domain containing protein; Proprotein convertase, P; KEGG: son:SO0867 serine protease, subtilase family; peptidase S8/S53 subtilisin kexin sedolisin complement(4079364..4081871) Shewanella sp. ANA-3 4476754 YP_871041.1 CDS Shewana3_3412 NC_008577.1 4082273 4082692 D PFAM: Curlin associated repeat protein; KEGG: son:SO0866 minor curlin subunit CsgB, putative; curlin-associated protein 4082273..4082692 Shewanella sp. ANA-3 4476755 YP_871042.1 CDS Shewana3_3413 NC_008577.1 4082707 4084215 D PFAM: Curlin associated repeat protein; KEGG: son:SO0865 hypothetical protein; curlin-associated protein 4082707..4084215 Shewanella sp. ANA-3 4476756 YP_871043.1 CDS Shewana3_3414 NC_008577.1 4084416 4085081 R PFAM: regulatory protein, LuxR; KEGG: son:SO0864 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(4084416..4085081) Shewanella sp. ANA-3 4476757 YP_871044.1 CDS Shewana3_3415 NC_008577.1 4085447 4086055 R KEGG: son:SO0863 hypothetical protein; hypothetical protein complement(4085447..4086055) Shewanella sp. ANA-3 4476758 YP_871045.1 CDS Shewana3_3416 NC_008577.1 4086211 4087440 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 4086211..4087440 Shewanella sp. ANA-3 4476759 YP_871046.1 CDS Shewana3_3417 NC_008577.1 4087578 4088534 D PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: son:SO0861 hypothetical protein; glycine cleavage T protein (aminomethyl transferase) 4087578..4088534 Shewanella sp. ANA-3 4476760 YP_871047.1 CDS Shewana3_3418 NC_008577.1 4088583 4089599 R PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO0860 response regulator; response regulator receiver modulated metal dependent phosphohydrolase complement(4088583..4089599) Shewanella sp. ANA-3 4476761 YP_871048.1 CDS Shewana3_3419 NC_008577.1 4089662 4094965 R KEGG: son:SO0859 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase complement(4089662..4094965) Shewanella sp. ANA-3 4476762 YP_871049.1 CDS Shewana3_3420 NC_008577.1 4095117 4096475 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: son:SO0858 sodium:alanine symporter family protein; amino acid carrier protein complement(4095117..4096475) Shewanella sp. ANA-3 4476763 YP_871050.1 CDS Shewana3_3421 NC_008577.1 4097120 4097791 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0857 ABC transporter, ATP-binding protein; ABC transporter-like protein 4097120..4097791 Shewanella sp. ANA-3 4476764 YP_871051.1 CDS Shewana3_3422 NC_008577.1 4097796 4100459 D PFAM: protein of unknown function DUF214; KEGG: son:SO0856 putative ABC transport system permease protein; hypothetical protein 4097796..4100459 Shewanella sp. ANA-3 4476765 YP_871052.1 CDS Shewana3_3423 NC_008577.1 4100456 4101706 D KEGG: son:SO0855 hypothetical protein; hypothetical protein 4100456..4101706 Shewanella sp. ANA-3 4476766 YP_871053.1 CDS Shewana3_3424 NC_008577.1 4101941 4102312 D PFAM: methylation site containing protein; KEGG: son:SO0854 type IV pilin, putative; methylation site containing protein 4101941..4102312 Shewanella sp. ANA-3 4476767 YP_871054.1 CDS Shewana3_3425 NC_008577.1 4102314 4102748 D PFAM: methylation site containing protein; KEGG: son:SO0853 pilin, putative; methylation site containing protein 4102314..4102748 Shewanella sp. ANA-3 4476768 YP_871055.1 CDS Shewana3_3426 NC_008577.1 4102739 4103146 D TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: son:SO0852 type IV pilus assembly protein PilV; prepilin-type cleavage/methylation-like protein 4102739..4103146 Shewanella sp. ANA-3 4476769 YP_871056.1 CDS Shewana3_3427 NC_008577.1 4103149 4103691 D TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: son:SO0851 hypothetical protein; prepilin-type cleavage/methylation-like protein 4103149..4103691 Shewanella sp. ANA-3 4476770 YP_871057.1 CDS Shewana3_3428 NC_008577.1 4103707 4105332 D KEGG: son:SO0850 hypothetical protein; hypothetical protein 4103707..4105332 Shewanella sp. ANA-3 4476771 YP_871058.1 CDS Shewana3_3429 NC_008577.1 4105574 4105843 D PFAM: NapD family protein; KEGG: son:SO0849 napD protein; NapD family protein 4105574..4105843 Shewanella sp. ANA-3 4476772 YP_871059.1 CDS Shewana3_3430 NC_008577.1 4105840 4108320 D periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 4105840..4108320 Shewanella sp. ANA-3 4476773 YP_871060.1 CDS napG NC_008577.1 4108372 4109106 D part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 4108372..4109106 Shewanella sp. ANA-3 4476774 YP_871061.1 CDS napH NC_008577.1 4109103 4110086 D part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 4109103..4110086 Shewanella sp. ANA-3 4476775 YP_871062.1 CDS Shewana3_3433 NC_008577.1 4110083 4110514 D KEGG: son:SO0845 cytochrome c-type protein NapB; periplasmic nitrate reductase subunit NapB 4110083..4110514 Shewanella sp. ANA-3 4476776 YP_871063.1 CDS Shewana3_3434 NC_008577.1 4110764 4110916 R KEGG: son:SO0844 hypothetical protein; hypothetical protein complement(4110764..4110916) Shewanella sp. ANA-3 4476777 YP_871064.1 CDS Shewana3_3435 NC_008577.1 4111011 4111898 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0843 transcriptional regulator, LysR family; LysR family transcriptional regulator 4111011..4111898 Shewanella sp. ANA-3 4476778 YP_871065.1 CDS Shewana3_3436 NC_008577.1 4112060 4114153 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(4112060..4114153) Shewanella sp. ANA-3 4476779 YP_871066.1 CDS Shewana3_3437 NC_008577.1 4114644 4116095 R KEGG: son:SO0841 GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein, family 3; diguanylate cyclase complement(4114644..4116095) Shewanella sp. ANA-3 4476780 YP_871067.1 CDS Shewana3_3438 NC_008577.1 4116555 4121108 R PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO0840 acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase; carbamoyl-phosphate synthase subunit L complement(4116555..4121108) Shewanella sp. ANA-3 4476781 YP_871068.1 CDS Shewana3_3439 NC_008577.1 4121231 4122142 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0839 transcriptional regulator, LysR family; LysR family transcriptional regulator 4121231..4122142 Shewanella sp. ANA-3 4476782 YP_871069.1 CDS Shewana3_3440 NC_008577.1 4122443 4123240 R PFAM: penicillin-binding protein, transpeptidase; KEGG: son:SO0837 beta-lactamase, putative; penicillin-binding protein, transpeptidase complement(4122443..4123240) Shewanella sp. ANA-3 4476783 YP_871070.1 CDS Shewana3_3441 NC_008577.1 4123590 4124747 D KEGG: son:SO0835 hypothetical protein; hypothetical protein 4123590..4124747 Shewanella sp. ANA-3 4476784 YP_871071.1 CDS Shewana3_3442 NC_008577.1 4124928 4125533 D PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; KEGG: son:SO0834 sprT protein, putative; hypothetical protein 4124928..4125533 Shewanella sp. ANA-3 4476785 YP_871072.1 CDS Shewana3_3443 NC_008577.1 4125663 4126436 D PFAM: Endonuclease I; KEGG: son:SO0833 endonuclease I; endonuclease I 4125663..4126436 Shewanella sp. ANA-3 4476786 YP_871073.1 CDS Shewana3_3444 NC_008577.1 4126445 4127176 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 4126445..4127176 Shewanella sp. ANA-3 4476787 YP_871074.1 CDS Shewana3_3445 NC_008577.1 4127283 4128230 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 4127283..4128230 Shewanella sp. ANA-3 4476788 YP_871075.1 CDS Shewana3_3446 NC_008577.1 4128304 4129698 D PFAM: Alkaline phosphatase; KEGG: son:SO0830 alkaline phosphatase; alkaline phosphatase 4128304..4129698 Shewanella sp. ANA-3 4476789 YP_871076.1 CDS Shewana3_3447 NC_008577.1 4129854 4130915 D PFAM: methyltransferase small; Methyltransferase small, N-terminal domain protein; KEGG: son:SO0828 ribosomal RNA small subunit methyltransferase C; 16S rRNA m(2)G 1207 methyltransferase 4129854..4130915 Shewanella sp. ANA-3 4476790 YP_871077.1 CDS Shewana3_3448 NC_008577.1 4131429 4131998 D hypothetical protein 4131429..4131998 Shewanella sp. ANA-3 4476791 YP_871078.1 CDS Shewana3_3449 NC_008577.1 4132077 4132910 D hypothetical protein 4132077..4132910 Shewanella sp. ANA-3 4476792 YP_871079.1 CDS Shewana3_3450 NC_008577.1 4133043 4133441 D hypothetical protein 4133043..4133441 Shewanella sp. ANA-3 4476793 YP_871080.1 CDS Shewana3_3451 NC_008577.1 4134028 4135719 D PFAM: protein of unknown function DUF342; KEGG: son:SO0826 hypothetical protein; hypothetical protein 4134028..4135719 Shewanella sp. ANA-3 4476794 YP_871081.1 CDS Shewana3_3452 NC_008577.1 4135947 4136324 D KEGG: son:SO0824 hypothetical protein; hypothetical protein 4135947..4136324 Shewanella sp. ANA-3 4476795 YP_871082.1 CDS Shewana3_3453 NC_008577.1 4136514 4137638 D PFAM: peptidase M50; KEGG: son:SO0823 hypothetical protein; peptidase M50 4136514..4137638 Shewanella sp. ANA-3 4476796 YP_871083.1 CDS Shewana3_3454 NC_008577.1 4137724 4139157 R PFAM: outer membrane efflux protein; KEGG: son:SO0822 outer membrane efflux family protein; outer membrane efflux protein complement(4137724..4139157) Shewanella sp. ANA-3 4476797 YP_871084.1 CDS Shewana3_3455 NC_008577.1 4139162 4141132 R PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: son:SO0821 ABC transporter, ATP-binding/permease protein; ABC transporter-like protein complement(4139162..4141132) Shewanella sp. ANA-3 4476798 YP_871085.1 CDS Shewana3_3456 NC_008577.1 4141135 4142364 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO0820 HlyD family secretion protein; RND family efflux transporter MFP subunit complement(4141135..4142364) Shewanella sp. ANA-3 4476799 YP_871086.1 CDS Shewana3_3457 NC_008577.1 4142698 4143624 D TIGRFAM: esterase, PHB depolymerase family; KEGG: cps:CPS_0935 putative polyhydroxyalkanoate depolymerase; PHB depolymerase family esterase 4142698..4143624 Shewanella sp. ANA-3 4476800 YP_871087.1 CDS Shewana3_3458 NC_008577.1 4143817 4146093 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_0936 TonB-dependent receptor; TonB-dependent receptor 4143817..4146093 Shewanella sp. ANA-3 4476801 YP_871088.1 CDS Shewana3_3459 NC_008577.1 4146224 4146895 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: cps:CPS_0937 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 4146224..4146895 Shewanella sp. ANA-3 4476802 YP_871089.1 CDS Shewana3_3460 NC_008577.1 4146997 4150524 R TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: cps:CPS_0939 sensory box sensor histidine kinase/response regulator; multi-sensor hybrid histidine kinase complement(4146997..4150524) Shewanella sp. ANA-3 4476803 YP_871090.1 CDS Shewana3_3461 NC_008577.1 4150670 4151845 D PFAM: major facilitator superfamily MFS_1; KEGG: cps:CPS_0940 major facilitator family transporter; major facilitator superfamily transporter 4150670..4151845 Shewanella sp. ANA-3 4476804 YP_871091.1 CDS Shewana3_3462 NC_008577.1 4151848 4152837 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: cps:CPS_0941 putative lipase; alpha/beta hydrolase domain-containing protein 4151848..4152837 Shewanella sp. ANA-3 4476805 YP_871092.1 CDS Shewana3_3463 NC_008577.1 4152955 4153410 R hypothetical protein complement(4152955..4153410) Shewanella sp. ANA-3 4476806 YP_871093.1 CDS Shewana3_3464 NC_008577.1 4153537 4155243 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(4153537..4155243) Shewanella sp. ANA-3 4476807 YP_871094.1 CDS Shewana3_3465 NC_008577.1 4155321 4156433 R catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase complement(4155321..4156433) Shewanella sp. ANA-3 4476808 YP_871095.1 CDS Shewana3_3466 NC_008577.1 4156829 4157707 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cps:CPS_0943 D-beta-hydroxybutyrate dehydrogenase; short-chain dehydrogenase/reductase SDR complement(4156829..4157707) Shewanella sp. ANA-3 4476809 YP_871096.1 CDS Shewana3_3467 NC_008577.1 4157847 4158554 D TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; KEGG: cps:CPS_1598 3-oxoadipate CoA-succinyl transferase, alpha subunit; 3-oxoacid CoA-transferase subunit A 4157847..4158554 Shewanella sp. ANA-3 4476810 YP_871097.1 CDS Shewana3_3468 NC_008577.1 4158564 4159226 D TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; KEGG: cps:CPS_1597 3-oxoadipate CoA-succinyl transferase, beta subunit; butyryl-CoA:acetate CoA transferase 4158564..4159226 Shewanella sp. ANA-3 4476811 YP_871098.1 CDS Shewana3_3469 NC_008577.1 4159363 4161633 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(4159363..4161633) Shewanella sp. ANA-3 4476812 YP_871099.1 CDS Shewana3_3470 NC_008577.1 4161834 4162739 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0817 transcriptional activator protein MetR; LysR family transcriptional regulator 4161834..4162739 Shewanella sp. ANA-3 4476813 YP_871100.1 CDS Shewana3_3471 NC_008577.1 4162800 4163528 R KEGG: son:SO0816 hypothetical protein; putative signal transduction protein complement(4162800..4163528) Shewanella sp. ANA-3 4479255 YP_871101.1 CDS Shewana3_3472 NC_008577.1 4163810 4165771 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO0815 TonB-dependent receptor C-terminal domain protein; TonB-dependent siderophore receptor complement(4163810..4165771) Shewanella sp. ANA-3 4479256 YP_871102.1 CDS Shewana3_3473 NC_008577.1 4166237 4166905 R KEGG: rfr:Rfer_3959 hypothetical protein; hypothetical protein complement(4166237..4166905) Shewanella sp. ANA-3 4479257 YP_871103.1 CDS Shewana3_3474 NC_008577.1 4167151 4168587 R KEGG: son:SO0813 hypothetical protein; hypothetical protein complement(4167151..4168587) Shewanella sp. ANA-3 4479258 YP_871104.1 CDS Shewana3_3475 NC_008577.1 4168591 4169865 R KEGG: son:SO0812 hypothetical protein; hypothetical protein complement(4168591..4169865) Shewanella sp. ANA-3 4479259 YP_871105.1 CDS rihA NC_008577.1 4170160 4171116 D Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 4170160..4171116 Shewanella sp. ANA-3 4479260 YP_871106.1 CDS Shewana3_3477 NC_008577.1 4171135 4172046 D catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 4171135..4172046 Shewanella sp. ANA-3 4479261 YP_871107.1 CDS Shewana3_3478 NC_008577.1 4172215 4172691 D PFAM: blue (type 1) copper domain protein; KEGG: son:SO0809 azurin precursor; blue (type1) copper domain-containing protein 4172215..4172691 Shewanella sp. ANA-3 4479262 YP_871108.1 CDS Shewana3_3479 NC_008577.1 4172840 4173145 R KEGG: son:SO0808 hypothetical protein; hypothetical protein complement(4172840..4173145) Shewanella sp. ANA-3 4479263 YP_871109.1 CDS Shewana3_3480 NC_008577.1 4173500 4174765 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sde:Sde_0801 glycerophosphoryl diester phosphodiesterase family protein; glycerophosphoryl diester phosphodiesterase 4173500..4174765 Shewanella sp. ANA-3 4479264 YP_871110.1 CDS Shewana3_3481 NC_008577.1 4174850 4175416 R KEGG: son:SO0807 hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase complement(4174850..4175416) Shewanella sp. ANA-3 4479265 YP_871111.1 CDS Shewana3_3482 NC_008577.1 4175750 4177516 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Alkaline phosphatase; KEGG: son:SO0806 alkaline phosphatase, putative; alkaline phosphatase complement(4175750..4177516) Shewanella sp. ANA-3 4479266 YP_871112.1 CDS Shewana3_3483 NC_008577.1 4177778 4178203 D PFAM: CBS domain containing protein; KEGG: son:SO0805 CBS domain protein; hypothetical protein 4177778..4178203 Shewanella sp. ANA-3 4479267 YP_871113.1 CDS Shewana3_3484 NC_008577.1 4178287 4178892 D KEGG: son:SO0804 hypothetical protein; hypothetical protein 4178287..4178892 Shewanella sp. ANA-3 4479268 YP_871114.1 CDS Shewana3_3485 NC_008577.1 4178943 4180304 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO0802 MATE efflux family protein; MATE efflux family protein complement(4178943..4180304) Shewanella sp. ANA-3 4479269 YP_871115.1 CDS Shewana3_3486 NC_008577.1 4180632 4181546 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: son:SO0801 hypothetical protein; alpha/beta hydrolase domain-containing protein 4180632..4181546 Shewanella sp. ANA-3 4479270 YP_871116.1 CDS Shewana3_3487 NC_008577.1 4181640 4182122 R PFAM: protein of unknown function DUF985; KEGG: son:SO0799 hypothetical protein; hypothetical protein complement(4181640..4182122) Shewanella sp. ANA-3 4479271 YP_871117.1 CDS Shewana3_3488 NC_008577.1 4182368 4183276 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: son:SO0796 GGDEF family protein; diguanylate cyclase 4182368..4183276 Shewanella sp. ANA-3 4479272 YP_871118.1 CDS Shewana3_3489 NC_008577.1 4183361 4185589 R TIGRFAM: uncharacterized domain; PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: cps:CPS_1756 hypothetical protein; hypothetical protein complement(4183361..4185589) Shewanella sp. ANA-3 4479273 YP_871119.1 CDS Shewana3_3490 NC_008577.1 4185766 4186008 R KEGG: son:SO0793 hypothetical protein; hypothetical protein complement(4185766..4186008) Shewanella sp. ANA-3 4479274 YP_871120.1 CDS Shewana3_3491 NC_008577.1 4186284 4187948 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: son:SO0987 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4186284..4187948 Shewanella sp. ANA-3 4479275 YP_871121.1 CDS Shewana3_3492 NC_008577.1 4188126 4188515 R KEGG: son:SO0792 hypothetical protein; hypothetical protein complement(4188126..4188515) Shewanella sp. ANA-3 4479276 YP_871122.1 CDS Shewana3_3493 NC_008577.1 4188792 4189037 D KEGG: son:SO0788 hypothetical protein; hypothetical protein 4188792..4189037 Shewanella sp. ANA-3 4479277 YP_871123.1 CDS Shewana3_3494 NC_008577.1 4190297 4191307 R hypothetical protein complement(4190297..4191307) Shewanella sp. ANA-3 4479278 YP_871124.1 CDS Shewana3_3495 NC_008577.1 4191310 4191579 R hypothetical protein complement(4191310..4191579) Shewanella sp. ANA-3 4479279 YP_871125.1 CDS Shewana3_3496 NC_008577.1 4191837 4194899 R PFAM: cell divisionFtsK/SpoIIIE; KEGG: rba:RB3794 conserved hypothetical ATP-binding protein HP0066; cell division protein FtsK complement(4191837..4194899) Shewanella sp. ANA-3 4479280 YP_871126.1 CDS Shewana3_3497 NC_008577.1 4194899 4195426 R hypothetical protein complement(4194899..4195426) Shewanella sp. ANA-3 4479281 YP_871127.1 CDS Shewana3_3498 NC_008577.1 4195456 4197252 R KEGG: pha:PSHAa0702 hypothetical protein ; membrane protein; hypothetical protein complement(4195456..4197252) Shewanella sp. ANA-3 4479282 YP_871128.1 CDS Shewana3_3499 NC_008577.1 4198244 4201132 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(4198244..4201132) Shewanella sp. ANA-3 4479283 YP_871129.1 CDS Shewana3_3500 NC_008577.1 4201255 4201644 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(4201255..4201644) Shewanella sp. ANA-3 4479284 YP_871130.1 CDS gcvT NC_008577.1 4201670 4202764 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(4201670..4202764) Shewanella sp. ANA-3 4479285 YP_871131.1 CDS Shewana3_3502 NC_008577.1 4203163 4204386 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO0778 oxidoreductase, FAD-binding, UbiH/Coq6 family; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase complement(4203163..4204386) Shewanella sp. ANA-3 4479286 YP_871132.1 CDS Shewana3_3503 NC_008577.1 4204423 4205628 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: son:SO0777 2-octaprenyl-6-methoxyphenol hydroxylase; 2-octaprenyl-6-methoxyphenol hydroxylase complement(4204423..4205628) Shewanella sp. ANA-3 4479287 YP_871133.1 CDS Shewana3_3504 NC_008577.1 4205751 4206326 R TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: son:SO0776 hypothetical protein; yecA family protein complement(4205751..4206326) Shewanella sp. ANA-3 4479288 YP_871134.1 CDS Shewana3_3505 NC_008577.1 4206552 4206854 D PFAM: protein of unknown function DUF710; KEGG: son:SO0775 hypothetical protein; cell division protein ZapA 4206552..4206854 Shewanella sp. ANA-3 4479289 YP_871135.1 CDS Shewana3_3506 NC_008577.1 4207158 4207835 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: son:SO0774 5-formyltetrahydrofolate cyclo-ligase family protein; 5-formyltetrahydrofolate cyclo-ligase 4207158..4207835 Shewanella sp. ANA-3 4479290 YP_871136.1 CDS Shewana3_3507 NC_008577.1 4207997 4208716 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO0772 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase complement(4207997..4208716) Shewanella sp. ANA-3 4479291 YP_871137.1 CDS Shewana3_3508 NC_008577.1 4208927 4209316 D PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: son:SO0771 hypothetical protein; putative thiol-disulfide oxidoreductase DCC 4208927..4209316 Shewanella sp. ANA-3 4479292 YP_871138.1 CDS Shewana3_3509 NC_008577.1 4209397 4210332 R oxidizes malate to oxaloacetate; malate dehydrogenase complement(4209397..4210332) Shewanella sp. ANA-3 4479293 YP_871139.1 CDS Shewana3_3510 NC_008577.1 4210623 4211093 D regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 4210623..4211093 Shewanella sp. ANA-3 4479294 YP_871140.1 CDS Shewana3_3511 NC_008577.1 4211317 4211949 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: son:SO0768 putative NADH-flavin reductase; NAD-dependent epimerase/dehydratase complement(4211317..4211949) Shewanella sp. ANA-3 4479295 YP_871141.1 CDS Shewana3_3512 NC_008577.1 4212053 4212955 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vvy:VVA0252 transcriptional regulator; transcriptional regulator 4212053..4212955 Shewanella sp. ANA-3 4479296 YP_871142.1 CDS Shewana3_3513 NC_008577.1 4213020 4213961 R TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: son:SO0740 melanin biosynthesis protein TyrA, putative; Dyp-type peroxidase family protein complement(4213020..4213961) Shewanella sp. ANA-3 4479297 YP_871143.1 CDS Shewana3_3514 NC_008577.1 4214168 4215880 R TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: son:SO0741 gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2 complement(4214168..4215880) Shewanella sp. ANA-3 4479298 YP_871144.1 CDS Shewana3_3515 NC_008577.1 4216020 4217069 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: son:SO0742 iron(III) ABC transporter, ATP-binding protein; ABC transporter-like protein complement(4216020..4217069) Shewanella sp. ANA-3 4479299 YP_871145.1 CDS Shewana3_3516 NC_008577.1 4217066 4218700 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO0743 iron(III) ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(4217066..4218700) Shewanella sp. ANA-3 4479300 YP_871146.1 CDS Shewana3_3517 NC_008577.1 4218778 4219785 R PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO0744 iron(III) ABC transporter, periplasmic iron(III)-binding protein; extracellular solute-binding protein complement(4218778..4219785) Shewanella sp. ANA-3 4479301 YP_871147.1 CDS Shewana3_3518 NC_008577.1 4220004 4220426 D KEGG: son:SO0745 hypothetical protein; hypothetical protein 4220004..4220426 Shewanella sp. ANA-3 4479302 YP_871148.1 CDS Shewana3_3519 NC_008577.1 4220433 4221029 R PFAM: Glutathione S-transferase, N-terminal domain protein; KEGG: son:SO0746 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein complement(4220433..4221029) Shewanella sp. ANA-3 4476119 YP_871149.1 CDS Shewana3_3520 NC_008577.1 4221101 4221850 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: son:SO0747 ferredoxin--NADP reductase; oxidoreductase FAD/NAD(P)-binding subunit complement(4221101..4221850) Shewanella sp. ANA-3 4476120 YP_871150.1 CDS Shewana3_3521 NC_008577.1 4221995 4222588 R KEGG: son:SO0748 hypothetical protein; hypothetical protein complement(4221995..4222588) Shewanella sp. ANA-3 4476121 YP_871151.1 CDS Shewana3_3522 NC_008577.1 4222759 4223352 D PFAM: Phosphoglycerate mutase; KEGG: son:SO0749 hypothetical protein; phosphoglycerate mutase 4222759..4223352 Shewanella sp. ANA-3 4476122 YP_871152.1 CDS Shewana3_3523 NC_008577.1 4223364 4224854 D PFAM: ferredoxin-dependent glutamate synthase; KEGG: son:SO0750 glutamate synthase, putative; ferredoxin-dependent glutamate synthase 4223364..4224854 Shewanella sp. ANA-3 4476123 YP_871153.1 CDS Shewana3_3524 NC_008577.1 4224999 4225205 D KEGG: son:SO0752 hypothetical protein; hypothetical protein 4224999..4225205 Shewanella sp. ANA-3 4476124 YP_871154.1 CDS Shewana3_3525 NC_008577.1 4225240 4225497 R KEGG: son:SO0753 hypothetical protein; hypothetical protein complement(4225240..4225497) Shewanella sp. ANA-3 4476125 YP_871155.1 CDS Shewana3_3526 NC_008577.1 4225580 4227376 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0754 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(4225580..4227376) Shewanella sp. ANA-3 4476126 YP_871156.1 CDS Shewana3_3527 NC_008577.1 4227826 4228002 D KEGG: son:SO0755 hypothetical protein; hypothetical protein 4227826..4228002 Shewanella sp. ANA-3 4476127 YP_871157.1 CDS Shewana3_3528 NC_008577.1 4228053 4229111 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(4228053..4229111) Shewanella sp. ANA-3 4476128 YP_871158.1 CDS Shewana3_3529 NC_008577.1 4229421 4230608 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO0757 TPR domain protein; hypothetical protein complement(4229421..4230608) Shewanella sp. ANA-3 4476129 YP_871159.1 CDS Shewana3_3530 NC_008577.1 4230727 4231074 R KEGG: son:SO0758 hypothetical protein; hypothetical protein complement(4230727..4231074) Shewanella sp. ANA-3 4476130 YP_871160.1 CDS Shewana3_3531 NC_008577.1 4231191 4232441 R PFAM: Rh family protein/ammonium transporter; KEGG: son:SO0760 ammonium transporter; Rh family protein/ammonium transporter complement(4231191..4232441) Shewanella sp. ANA-3 4476131 YP_871161.1 CDS Shewana3_3532 NC_008577.1 4232452 4232790 R PFAM: nitrogen regulatory protein P-II; KEGG: son:SO0761 nitrogen regulatory protein P-II 1; nitrogen regulatory protein P-II complement(4232452..4232790) Shewanella sp. ANA-3 4476132 YP_871162.1 CDS Shewana3_3533 NC_008577.1 4233100 4233642 D PFAM: isochorismatase hydrolase; KEGG: son:SO0762 isochorismatase family protein; isochorismatase hydrolase 4233100..4233642 Shewanella sp. ANA-3 4476133 YP_871163.1 CDS Shewana3_3534 NC_008577.1 4233679 4234413 R KEGG: ppr:PBPRA1347 hypothetical protein; hypothetical protein complement(4233679..4234413) Shewanella sp. ANA-3 4476134 YP_871164.1 CDS Shewana3_3535 NC_008577.1 4234507 4235316 R KEGG: son:SO0764 hypothetical protein; hypothetical protein complement(4234507..4235316) Shewanella sp. ANA-3 4476135 YP_871165.1 CDS Shewana3_3536 NC_008577.1 4235451 4236155 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: son:SO0765 threonine efflux protein, putative; lysine exporter protein LysE/YggA complement(4235451..4236155) Shewanella sp. ANA-3 4476136 YP_871166.1 CDS Shewana3_3537 NC_008577.1 4236267 4237097 R PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: son:SO0766 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator complement(4236267..4237097) Shewanella sp. ANA-3 4476137 YP_871167.1 CDS Shewana3_3538 NC_008577.1 4237251 4237997 R KEGG: son:SO0766.1 hypothetical protein; hypothetical protein complement(4237251..4237997) Shewanella sp. ANA-3 4476138 YP_871168.1 CDS Shewana3_3539 NC_008577.1 4238106 4239746 R PFAM: Alkaline phosphatase; KEGG: cps:CPS_3933 alkaline phosphatase family protein; alkaline phosphatase complement(4238106..4239746) Shewanella sp. ANA-3 4476139 YP_871169.1 CDS Shewana3_3540 NC_008577.1 4239789 4241285 R PFAM: Alkaline phosphatase; KEGG: cps:CPS_3932 alkaline phosphatase family protein; peptidoglycan glycosyltransferase complement(4239789..4241285) Shewanella sp. ANA-3 4476140 YP_871170.1 CDS Shewana3_3541 NC_008577.1 4241521 4243599 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO0737 TonB-dependent receptor, putative; TonB-dependent receptor complement(4241521..4243599) Shewanella sp. ANA-3 4476141 YP_871171.1 CDS Shewana3_3542 NC_008577.1 4243942 4244742 D KEGG: son:SO0736 conserved hypothetical protein; hypothetical protein 4243942..4244742 Shewanella sp. ANA-3 4476142 YP_871172.1 CDS Shewana3_3543 NC_008577.1 4244988 4246967 D KEGG: mag:amb2980 hypothetical 918 kDa protein Y4LL; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 4244988..4246967 Shewanella sp. ANA-3 4476143 YP_871173.1 CDS Shewana3_3544 NC_008577.1 4247053 4247631 D PFAM: Cold-shock protein, DNA-binding; Excalibur domain protein; SMART: Cold shock protein; KEGG: son:SO0733 cold shock domain family protein; cold-shock DNA-binding protein family protein 4247053..4247631 Shewanella sp. ANA-3 4476144 YP_871174.1 CDS Shewana3_3545 NC_008577.1 4247736 4252655 R TIGRFAM: conserved repeat domain; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: son:SO4539 serine protease, subtilase family; hypothetical protein complement(4247736..4252655) Shewanella sp. ANA-3 4476145 YP_871175.1 CDS Shewana3_3546 NC_008577.1 4252923 4253276 D KEGG: son:SO0732 hypothetical protein; hypothetical protein 4252923..4253276 Shewanella sp. ANA-3 4476146 YP_871176.1 CDS Shewana3_3547 NC_008577.1 4253372 4254862 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0726 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(4253372..4254862) Shewanella sp. ANA-3 4476147 YP_871177.1 CDS Shewana3_3548 NC_008577.1 4254959 4255699 R KEGG: neu:NE1275 hypothetical protein; arginine N-succinyltransferase complement(4254959..4255699) Shewanella sp. ANA-3 4476148 YP_871178.1 CDS Shewana3_3549 NC_008577.1 4255905 4258124 R TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: son:SO0725 catalase/peroxidase HPI; catalase/peroxidase HPI complement(4255905..4258124) Shewanella sp. ANA-3 4476149 YP_871179.1 CDS Shewana3_3550 NC_008577.1 4258507 4258758 D KEGG: son:SO0721 hypothetical protein; hypothetical protein 4258507..4258758 Shewanella sp. ANA-3 4476150 YP_871180.1 CDS Shewana3_3551 NC_008577.1 4258927 4259457 D KEGG: son:SO0720 hypothetical protein; hypothetical protein 4258927..4259457 Shewanella sp. ANA-3 4476151 YP_871181.1 CDS Shewana3_3552 NC_008577.1 4259638 4260042 R PFAM: Carboxymuconolactone decarboxylase; KEGG: pae:PA4486 4-carboxymuconolactone decarboxylase; 4-carboxymuconolactone decarboxylase complement(4259638..4260042) Shewanella sp. ANA-3 4476152 YP_871182.1 CDS Shewana3_3553 NC_008577.1 4260233 4261216 R KEGG: vpa:VP0621 putative nonspecific acid phosphatase precursor; putative nonspecific acid phosphatase complement(4260233..4261216) Shewanella sp. ANA-3 4476153 YP_871183.1 CDS Shewana3_3554 NC_008577.1 4261251 4262669 R KEGG: vpa:VPA0690 hypothetical protein; hypothetical protein complement(4261251..4262669) Shewanella sp. ANA-3 4476154 YP_871184.1 CDS Shewana3_3555 NC_008577.1 4262666 4264387 R PFAM: von Willebrand factor, type A; KEGG: vfi:VF1421 transporter; von Willebrand factor type A domain-containing protein complement(4262666..4264387) Shewanella sp. ANA-3 4476155 YP_871185.1 CDS Shewana3_3556 NC_008577.1 4264380 4265387 R PFAM: von Willebrand factor, type A; KEGG: vpa:VPA0688 hypothetical protein; von Willebrand factor type A domain-containing protein complement(4264380..4265387) Shewanella sp. ANA-3 4476156 YP_871186.1 CDS Shewana3_3557 NC_008577.1 4265374 4265892 R KEGG: vpa:VPA0687 hypothetical protein; hypothetical protein complement(4265374..4265892) Shewanella sp. ANA-3 4476157 YP_871187.1 CDS Shewana3_3558 NC_008577.1 4265889 4266881 R PFAM: protein of unknown function DUF58; KEGG: vpa:VPA0686 hypothetical protein; hypothetical protein complement(4265889..4266881) Shewanella sp. ANA-3 4476158 YP_871188.1 CDS Shewana3_3559 NC_008577.1 4266887 4267888 R PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: vpa:VPA0685 MoxR-related protein; ubiquinol--cytochrome-c reductase complement(4266887..4267888) Shewanella sp. ANA-3 4476159 YP_871189.1 CDS Shewana3_3560 NC_008577.1 4267872 4269179 R PFAM: Radical SAM domain protein; KEGG: vpa:VPA0684 putative arylsulfatase regulator; radical SAM domain-containing protein complement(4267872..4269179) Shewanella sp. ANA-3 4476160 YP_871190.1 CDS Shewana3_3562 NC_008577.1 4270905 4271750 D PFAM: regulatory protein, LysR; KEGG: vvu:VV20150 transcriptional regulator; transcriptional regulator 4270905..4271750 Shewanella sp. ANA-3 4476162 YP_871191.1 CDS Shewana3_3563 NC_008577.1 4272109 4273395 D hypothetical protein 4272109..4273395 Shewanella sp. ANA-3 4476163 YP_871192.1 CDS Shewana3_3564 NC_008577.1 4273979 4274785 D PFAM: protein of unknown function DUF88; KEGG: syn:slr1870 hypothetical protein; hypothetical protein 4273979..4274785 Shewanella sp. ANA-3 4476164 YP_871193.1 CDS Shewana3_3565 NC_008577.1 4274894 4276507 D KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase 4274894..4276507 Shewanella sp. ANA-3 4476165 YP_871194.1 CDS Shewana3_3566 NC_008577.1 4276585 4278051 D KEGG: msu:MS0984 hypothetical protein; hypothetical protein 4276585..4278051 Shewanella sp. ANA-3 4476166 YP_871195.1 CDS groEL NC_008577.1 4278553 4280190 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(4278553..4280190) Shewanella sp. ANA-3 4476167 YP_871196.1 CDS groES NC_008577.1 4280248 4280538 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(4280248..4280538) Shewanella sp. ANA-3 4476168 YP_871197.1 CDS Shewana3_3569 NC_008577.1 4280766 4282124 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO0702 MATE efflux family protein; MATE efflux family protein 4280766..4282124 Shewanella sp. ANA-3 4476169 YP_871198.1 CDS Shewana3_3570 NC_008577.1 4282121 4283116 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0701 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4282121..4283116) Shewanella sp. ANA-3 4476170 YP_871199.1 CDS Shewana3_3571 NC_008577.1 4283246 4284328 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ppr:PBPRA2319 hypothetical membrane-fusion protein; RND family efflux transporter MFP subunit 4283246..4284328 Shewanella sp. ANA-3 4476171 YP_871200.1 CDS Shewana3_3572 NC_008577.1 4284332 4287415 D PFAM: acriflavin resistance protein; KEGG: ppr:PBPRA2318 hypothetical transporter, AcrB/D/F family; acriflavin resistance protein 4284332..4287415 Shewanella sp. ANA-3 4476172 YP_871201.1 CDS Shewana3_3573 NC_008577.1 4287593 4287973 R KEGG: son:SO0699 hypothetical protein; hypothetical protein complement(4287593..4287973) Shewanella sp. ANA-3 4476173 YP_871202.1 CDS Shewana3_3574 NC_008577.1 4288151 4288771 R PFAM: FxsA cytoplasmic membrane protein; KEGG: son:SO0698 FxsA protein; FxsA cytoplasmic membrane protein complement(4288151..4288771) Shewanella sp. ANA-3 4476174 YP_871203.1 CDS Shewana3_3575 NC_008577.1 4288995 4289318 D PFAM: CutA1 divalent ion tolerance protein; KEGG: son:SO0697 periplasmic divalent cation tolerance protein CutA; CutA1 divalent ion tolerance protein 4288995..4289318 Shewanella sp. ANA-3 4476175 YP_871204.1 CDS dipZ NC_008577.1 4289315 4291156 D two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 4289315..4291156 Shewanella sp. ANA-3 4476176 YP_871205.1 CDS Shewana3_3577 NC_008577.1 4291309 4292952 D PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: son:SO0695 glutathione-regulated potassium-efflux system protein KefC, putative; sodium/hydrogen exchanger 4291309..4292952 Shewanella sp. ANA-3 4476177 YP_871206.1 CDS Shewana3_3578 NC_008577.1 4293280 4294425 D TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: son:SO0694 galactokinase; galactokinase 4293280..4294425 Shewanella sp. ANA-3 4476178 YP_871207.1 CDS Shewana3_3579 NC_008577.1 4294551 4295582 D PFAM: Aldose 1-epimerase; KEGG: son:SO0693 aldose 1-epimerase; aldose 1-epimerase 4294551..4295582 Shewanella sp. ANA-3 4476179 YP_871208.1 CDS Shewana3_3580 NC_008577.1 4295692 4296096 R KEGG: son:SO0691 hypothetical protein; hypothetical protein complement(4295692..4296096) Shewanella sp. ANA-3 4476180 YP_871209.1 CDS Shewana3_3581 NC_008577.1 4296419 4297417 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: son:SO0640 alcohol dehydrogenase, zinc-containing; response regulator receiver protein complement(4296419..4297417) Shewanella sp. ANA-3 4476181 YP_871210.1 CDS Shewana3_3582 NC_008577.1 4297593 4299368 R KEGG: son:SO4013 hypothetical protein; hypothetical protein complement(4297593..4299368) Shewanella sp. ANA-3 4476182 YP_871211.1 CDS Shewana3_3583 NC_008577.1 4299462 4300823 R PFAM: protein kinase; leucine-rich repeat protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; leucine-rich repeat-containing protein, typical subtype; KEGG: son:SO4016 hypothetical protein; serine/threonine protein kinase complement(4299462..4300823) Shewanella sp. ANA-3 4476183 YP_871212.1 CDS Shewana3_3584 NC_008577.1 4300980 4302404 D PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: son:SO4017 transglycosylase, Slt family; MltD domain-containing protein 4300980..4302404 Shewanella sp. ANA-3 4476184 YP_871213.1 CDS Shewana3_3585 NC_008577.1 4302470 4303843 R KEGG: son:SO4018 hypothetical protein; hypothetical protein complement(4302470..4303843) Shewanella sp. ANA-3 4476185 YP_871214.1 CDS Shewana3_3586 NC_008577.1 4304294 4305259 R Involved in anaerobic NO protection; DNA-binding transcriptional regulator YidZ complement(4304294..4305259) Shewanella sp. ANA-3 4476186 YP_871215.1 CDS Shewana3_3587 NC_008577.1 4305234 4306424 R Confers resistance to chloramphenicol; multidrug efflux system protein MdtL complement(4305234..4306424) Shewanella sp. ANA-3 4476187 YP_871216.1 CDS Shewana3_3588 NC_008577.1 4306611 4309442 R PFAM: peptidase M16 domain protein; KEGG: son:SO4022 peptidase, M16 family; peptidase M16 domain-containing protein complement(4306611..4309442) Shewanella sp. ANA-3 4476188 YP_871217.1 CDS Shewana3_3589 NC_008577.1 4309733 4310326 R KEGG: cps:CPS_3019 hypothetical protein; hypothetical protein complement(4309733..4310326) Shewanella sp. ANA-3 4476189 YP_871218.1 CDS Shewana3_3590 NC_008577.1 4310551 4311258 R KEGG: son:SO4028 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; single-strand binding protein complement(4310551..4311258) Shewanella sp. ANA-3 4476190 YP_871219.1 CDS Shewana3_3591 NC_008577.1 4311366 4312733 R PFAM: major facilitator superfamily MFS_1; KEGG: son:SO4029 transporter, putative; major facilitator superfamily transporter complement(4311366..4312733) Shewanella sp. ANA-3 4476191 YP_871220.1 CDS Shewana3_3592 NC_008577.1 4313144 4315996 D TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: son:SO4030 excinuclease ABC, A subunit; excinuclease ABC subunit A 4313144..4315996 Shewanella sp. ANA-3 4476192 YP_871221.1 CDS Shewana3_3593 NC_008577.1 4316105 4316446 D KEGG: son:SO4031 hypothetical protein; hypothetical protein 4316105..4316446 Shewanella sp. ANA-3 4476193 YP_871222.1 CDS Shewana3_3594 NC_008577.1 4316530 4317570 D PFAM: peptidase M20; peptidase M28; KEGG: son:SO4032 hypothetical protein; peptidase M28 4316530..4317570 Shewanella sp. ANA-3 4476194 YP_871223.1 CDS Shewana3_3595 NC_008577.1 4317768 4319627 D PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO4034 ATP-dependent RNA helicase DeaD; DEAD/DEAH box helicase 4317768..4319627 Shewanella sp. ANA-3 4476195 YP_871224.1 CDS Shewana3_3596 NC_008577.1 4320013 4320384 D KEGG: son:SO4035 hypothetical protein; hypothetical protein 4320013..4320384 Shewanella sp. ANA-3 4476196 YP_871225.1 CDS Shewana3_3597 NC_008577.1 4320450 4321646 R PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_A1849 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(4320450..4321646) Shewanella sp. ANA-3 4476197 YP_871226.1 CDS Shewana3_3598 NC_008577.1 4321829 4322710 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ppr:PBPRB1652 putative transcriptional regulator, LysR family; LysR family transcriptional regulator 4321829..4322710 Shewanella sp. ANA-3 4476198 YP_871227.1 CDS Shewana3_3599 NC_008577.1 4322843 4323685 D PFAM: aldo/keto reductase; KEGG: ecj:JW0197 2,5-diketo-D-gluconate reductase B; aldo/keto reductase 4322843..4323685 Shewanella sp. ANA-3 4476199 YP_871228.1 CDS Shewana3_3600 NC_008577.1 4323702 4324322 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO4039 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase complement(4323702..4324322) Shewanella sp. ANA-3 4476200 YP_871229.1 CDS Shewana3_3601 NC_008577.1 4324331 4325320 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4040 integral membrane domain protein; hypothetical protein complement(4324331..4325320) Shewanella sp. ANA-3 4476201 YP_871230.1 CDS Shewana3_3602 NC_008577.1 4325639 4326454 D KEGG: son:SO4042 hydratase/decarboxylase family protein; hydratase/decarboxylase family protein 4325639..4326454 Shewanella sp. ANA-3 4476202 YP_871231.1 CDS Shewana3_3603 NC_008577.1 4326613 4327728 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: son:SO4043 TonB domain protein; TonB family protein 4326613..4327728 Shewanella sp. ANA-3 4476203 YP_871232.1 CDS Shewana3_3604 NC_008577.1 4327753 4328112 R KEGG: son:SO4044 hypothetical protein; hypothetical protein complement(4327753..4328112) Shewanella sp. ANA-3 4476204 YP_871233.1 CDS Shewana3_3605 NC_008577.1 4329321 4329695 R KEGG: vvy:VV1902 hypothetical protein; hypothetical protein complement(4329321..4329695) Shewanella sp. ANA-3 4476205 YP_871234.1 CDS Shewana3_3606 NC_008577.1 4330531 4331589 R KEGG: son:SO4047 cytochrome c family protein; cytochrome c family protein complement(4330531..4331589) Shewanella sp. ANA-3 4476206 YP_871235.1 CDS Shewana3_3607 NC_008577.1 4331600 4332226 R KEGG: son:SO4048 cytochrome c family protein; cytochrome c family protein complement(4331600..4332226) Shewanella sp. ANA-3 4476207 YP_871236.1 CDS Shewana3_3608 NC_008577.1 4332416 4333444 R KEGG: son:SO4050 hypothetical protein; response regulator receiver protein complement(4332416..4333444) Shewanella sp. ANA-3 4476208 YP_871237.1 CDS Shewana3_3609 NC_008577.1 4333461 4334519 R PFAM: secretion protein HlyD family protein; KEGG: son:SO4051 HlyD family secretion protein; secretion protein HlyD family protein complement(4333461..4334519) Shewanella sp. ANA-3 4476209 YP_871238.1 CDS Shewana3_3610 NC_008577.1 4334528 4335004 R PFAM: regulatory protein, MarR; KEGG: son:SO4052 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(4334528..4335004) Shewanella sp. ANA-3 4476210 YP_871239.1 CDS Shewana3_3611 NC_008577.1 4335221 4337125 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4053 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4335221..4337125 Shewanella sp. ANA-3 4476211 YP_871240.1 CDS metF NC_008577.1 4337205 4338098 R MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase complement(4337205..4338098) Shewanella sp. ANA-3 4476212 YP_871241.1 CDS metL NC_008577.1 4338401 4340794 R multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II complement(4338401..4340794) Shewanella sp. ANA-3 4476213 YP_871242.1 CDS Shewana3_3614 NC_008577.1 4340806 4341987 R TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: son:SO4056 cystathionine gamma-synthase; cystathionine gamma-synthase complement(4340806..4341987) Shewanella sp. ANA-3 4476214 YP_871243.1 CDS Shewana3_3615 NC_008577.1 4342192 4342506 D when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 4342192..4342506 Shewanella sp. ANA-3 4476215 YP_871244.1 CDS Shewana3_3616 NC_008577.1 4342614 4343357 D PFAM: protein of unknown function DUF81; KEGG: son:SO4058 hypothetical protein; hypothetical protein 4342614..4343357 Shewanella sp. ANA-3 4476216 YP_871245.1 CDS Shewana3_3617 NC_008577.1 4343480 4344424 R PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4060 polysulfide reductase, subunit C; polysulfide reductase, NrfD complement(4343480..4344424) Shewanella sp. ANA-3 4476217 YP_871246.1 CDS Shewana3_3618 NC_008577.1 4344427 4344993 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4061 polysulfide reductase, subunit B; 4Fe-4S ferredoxin complement(4344427..4344993) Shewanella sp. ANA-3 4476218 YP_871247.1 CDS Shewana3_3619 NC_008577.1 4345006 4347300 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4062 polysulfide reductase, subunit A; molybdopterin oxidoreductase complement(4345006..4347300) Shewanella sp. ANA-3 4476219 YP_871248.1 CDS Shewana3_3620 NC_008577.1 4347680 4348306 R PFAM: pentapeptide repeat protein; KEGG: son:SO4064 mcbg protein, putative; pentapeptide repeat-containing protein complement(4347680..4348306) Shewanella sp. ANA-3 4476220 YP_871249.1 CDS Shewana3_3621 NC_008577.1 4348712 4349023 D hypothetical protein 4348712..4349023 Shewanella sp. ANA-3 4476221 YP_871250.1 CDS Shewana3_3622 NC_008577.1 4349010 4350113 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 4349010..4350113 Shewanella sp. ANA-3 4476222 YP_871251.1 CDS Shewana3_3623 NC_008577.1 4350651 4351577 D KEGG: dps:DP2995 hypothetical protein; hypothetical protein 4350651..4351577 Shewanella sp. ANA-3 4476223 YP_871252.1 CDS Shewana3_3626 NC_008577.1 4353293 4354003 R PFAM: protein of unknown function DUF541; KEGG: son:SO4070 hypothetical protein; hypothetical protein complement(4353293..4354003) Shewanella sp. ANA-3 4476225 YP_871253.1 CDS rimO NC_008577.1 4354424 4355866 D catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 4354424..4355866 Shewanella sp. ANA-3 4476226 YP_871254.1 CDS Shewana3_3628 NC_008577.1 4356139 4356396 R PFAM: protein of unknown function DUF331; KEGG: son:SO4073 hypothetical protein; hypothetical protein complement(4356139..4356396) Shewanella sp. ANA-3 4476227 YP_871255.1 CDS Shewana3_3629 NC_008577.1 4356651 4357496 D KEGG: son:SO4075 hypothetical protein; hypothetical protein 4356651..4357496 Shewanella sp. ANA-3 4476228 YP_871256.1 CDS Shewana3_3630 NC_008577.1 4357678 4359819 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4077 TonB-dependent receptor, putative; TonB-dependent receptor 4357678..4359819 Shewanella sp. ANA-3 4476229 YP_871257.1 CDS Shewana3_3631 NC_008577.1 4359965 4361308 R PFAM: peptidase U62, modulator of DNA gyrase; KEGG: son:SO4078 PmbA protein; microcin-processing peptidase 1 complement(4359965..4361308) Shewanella sp. ANA-3 4476230 YP_871258.1 CDS Shewana3_3632 NC_008577.1 4361484 4362017 D PFAM: protein of unknown function DUF615; KEGG: son:SO4079 hypothetical protein; hypothetical protein 4361484..4362017 Shewanella sp. ANA-3 4476231 YP_871259.1 CDS Shewana3_3633 NC_008577.1 4362046 4364535 D PFAM: Ig domain protein, group 1 domain protein; KEGG: son:SO4080 hypothetical protein; Ig domain-containing protein 4362046..4364535 Shewanella sp. ANA-3 4476232 YP_871260.1 CDS Shewana3_3634 NC_008577.1 4364589 4365920 R PFAM: amino acid permease-associated region; KEGG: son:SO4081 amino acid permease; amino acid permease-associated protein complement(4364589..4365920) Shewanella sp. ANA-3 4476233 YP_871261.1 CDS Shewana3_3635 NC_008577.1 4366444 4366983 D KEGG: ppr:PBPRB1460 hypothetical protein; hypothetical protein 4366444..4366983 Shewanella sp. ANA-3 4476234 YP_871262.1 CDS Shewana3_3636 NC_008577.1 4367129 4367530 R hypothetical protein complement(4367129..4367530) Shewanella sp. ANA-3 4476235 YP_871263.1 CDS Shewana3_3637 NC_008577.1 4367699 4368850 R KEGG: son:SO4087 conserved hypothetical protein; hypothetical protein complement(4367699..4368850) Shewanella sp. ANA-3 4476236 YP_871264.1 CDS Shewana3_3638 NC_008577.1 4368852 4370147 R PFAM: ABC-2 type transporter; KEGG: son:SO4088 conserved hypothetical protein; ABC transporter complement(4368852..4370147) Shewanella sp. ANA-3 4476237 YP_871265.1 CDS Shewana3_3639 NC_008577.1 4370153 4371127 R PFAM: secretion protein HlyD family protein; KEGG: son:SO4089 HlyD family secretion protein; secretion protein HlyD family protein complement(4370153..4371127) Shewanella sp. ANA-3 4476238 YP_871266.1 CDS Shewana3_3640 NC_008577.1 4371117 4372586 R PFAM: outer membrane efflux protein; KEGG: son:SO4090 outer membrane efflux protein; outer membrane efflux protein complement(4371117..4372586) Shewanella sp. ANA-3 4476239 YP_871267.1 CDS Shewana3_3641 NC_008577.1 4372649 4374142 R PFAM: peptidase U62, modulator of DNA gyrase; KEGG: son:SO4091 TldD protein; microcin-processing peptidase 2 complement(4372649..4374142) Shewanella sp. ANA-3 4476240 YP_871268.1 CDS Shewana3_3642 NC_008577.1 4374222 4375016 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: son:SO4092 hydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(4374222..4375016) Shewanella sp. ANA-3 4476241 YP_871269.1 CDS Shewana3_3643 NC_008577.1 4374994 4379247 R TIGRFAM: conserved hypothetical protein; KEGG: son:SO4093 hypothetical protein; hypothetical protein complement(4374994..4379247) Shewanella sp. ANA-3 4476242 YP_871270.1 CDS Shewana3_3644 NC_008577.1 4379247 4380755 R involved in the processing of the 5'end of 16S rRNA; ribonuclease G complement(4379247..4380755) Shewanella sp. ANA-3 4476243 YP_871271.1 CDS Shewana3_3645 NC_008577.1 4380891 4381475 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: son:SO4095 maf protein; maf protein complement(4380891..4381475) Shewanella sp. ANA-3 4476244 YP_871272.1 CDS Shewana3_3646 NC_008577.1 4381478 4381966 R PFAM: Rod shape-determining protein MreD; KEGG: son:SO4096 rod shape-determining protein MreD; rod shape-determining protein MreD complement(4381478..4381966) Shewanella sp. ANA-3 4476245 YP_871273.1 CDS Shewana3_3647 NC_008577.1 4381966 4383027 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(4381966..4383027) Shewanella sp. ANA-3 4476246 YP_871274.1 CDS Shewana3_3648 NC_008577.1 4383072 4384121 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(4383072..4384121) Shewanella sp. ANA-3 4476247 YP_871275.1 CDS Shewana3_3649 NC_008577.1 4384465 4388211 R KEGG: son:SO4100 MSHA biogenesis protein MshQ; MSHA biogenesis protein MshQ complement(4384465..4388211) Shewanella sp. ANA-3 4476248 YP_871276.1 CDS Shewana3_3650 NC_008577.1 4388240 4388698 R KEGG: son:SO4101 MSHA biogenesis protein MshP; MSHA biogenesis protein MshP complement(4388240..4388698) Shewanella sp. ANA-3 4476249 YP_871277.1 CDS Shewana3_3651 NC_008577.1 4388688 4389551 R PFAM: methylation site containing protein; KEGG: son:SO4102 MSHA biogenesis protein MshO; methylation site containing protein complement(4388688..4389551) Shewanella sp. ANA-3 4476250 YP_871278.1 CDS Shewana3_3652 NC_008577.1 4389551 4390126 R PFAM: methylation site containing protein; KEGG: son:SO4103 MSHA pilin protein MshD; methylation site containing protein complement(4389551..4390126) Shewanella sp. ANA-3 4476251 YP_871279.1 CDS Shewana3_3653 NC_008577.1 4390116 4390604 R PFAM: methylation site containing protein; KEGG: son:SO4104 MSHA pilin protein MshC; methylation site containing protein complement(4390116..4390604) Shewanella sp. ANA-3 4476252 YP_871280.1 CDS Shewana3_3655 NC_008577.1 4391111 4392724 R KEGG: plu:plu4649 transposase, IS4 family; IS4 family transposase complement(4391111..4392724) Shewanella sp. ANA-3 4476254 YP_871281.1 CDS Shewana3_3656 NC_008577.1 4393070 4393579 R PFAM: methylation site containing protein; KEGG: son:SO4105 MSHA pilin protein MshA; methylation site containing protein complement(4393070..4393579) Shewanella sp. ANA-3 4476255 YP_871282.1 CDS Shewana3_3657 NC_008577.1 4393632 4394249 R PFAM: methylation site containing protein; KEGG: son:SO4106 MSHA pilin protein MshB; methylation site containing protein complement(4393632..4394249) Shewanella sp. ANA-3 4476256 YP_871283.1 CDS Shewana3_3658 NC_008577.1 4394325 4394822 R KEGG: son:SO4107 hypothetical protein; hypothetical protein complement(4394325..4394822) Shewanella sp. ANA-3 4476257 YP_871284.1 CDS Shewana3_3659 NC_008577.1 4394861 4396081 R PFAM: type II secretion system protein; KEGG: son:SO4108 MSHA biogenesis protein MshG; type II secretion system protein complement(4394861..4396081) Shewanella sp. ANA-3 4476258 YP_871285.1 CDS Shewana3_3660 NC_008577.1 4396084 4397844 R PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: son:SO4109 MSHA biogenesis protein MshE; type II secretion system protein E complement(4396084..4397844) Shewanella sp. ANA-3 4476259 YP_871286.1 CDS Shewana3_3661 NC_008577.1 4397841 4399184 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: son:SO4110 MSHA biogenesis protein MshN, putative; hypothetical protein complement(4397841..4399184) Shewanella sp. ANA-3 4476260 YP_871287.1 CDS Shewana3_3662 NC_008577.1 4399181 4400110 R KEGG: son:SO4111 MSHA biogenesis protein MshM; MSHA biogenesis protein MshM complement(4399181..4400110) Shewanella sp. ANA-3 4476261 YP_871288.1 CDS Shewana3_3663 NC_008577.1 4400117 4401802 R TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB, short N-terminal domain protein; KEGG: son:SO4112 MSHA biogenesis protein MshL; pilus (MSHA type) biogenesis protein MshL complement(4400117..4401802) Shewanella sp. ANA-3 4476262 YP_871289.1 CDS Shewana3_3664 NC_008577.1 4401817 4402134 R KEGG: son:SO4113 MSHA biogenesis protein MshK; MSHA biogenesis protein MshK complement(4401817..4402134) Shewanella sp. ANA-3 4476263 YP_871290.1 CDS Shewana3_3665 NC_008577.1 4402121 4402771 R KEGG: son:SO4114 MSHA biogenesis protein MshJ; MSHA biogenesis protein MshJ complement(4402121..4402771) Shewanella sp. ANA-3 4476264 YP_871291.1 CDS Shewana3_3666 NC_008577.1 4402768 4403370 R PFAM: Fimbrial assembly family protein; KEGG: vvu:VV11433 MSHA biogenesis protein MshI; fimbrial assembly family protein complement(4402768..4403370) Shewanella sp. ANA-3 4476265 YP_871292.1 CDS Shewana3_3667 NC_008577.1 4403367 4404245 R KEGG: son:SO4114.2 hypothetical biogenesis protein MshI; biogenesis protein MshI complement(4403367..4404245) Shewanella sp. ANA-3 4476266 YP_871293.1 CDS Shewana3_3668 NC_008577.1 4404484 4406394 R regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD complement(4404484..4406394) Shewanella sp. ANA-3 4476267 YP_871294.1 CDS Shewana3_3669 NC_008577.1 4406608 4407852 R PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: son:SO4118 malate oxidoreductase, putative; malic enzyme, NAD-binding complement(4406608..4407852) Shewanella sp. ANA-3 4476268 YP_871295.1 CDS rpmE NC_008577.1 4408364 4408576 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(4408364..4408576) Shewanella sp. ANA-3 4476269 YP_871296.1 CDS Shewana3_3671 NC_008577.1 4408742 4409917 R KEGG: son:SO4121 hypothetical protein; response regulator receiver protein complement(4408742..4409917) Shewanella sp. ANA-3 4476270 YP_871297.1 CDS Shewana3_3672 NC_008577.1 4410021 4412231 D TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: son:SO4122 primosomal protein N'; primosomal protein N' 4410021..4412231 Shewanella sp. ANA-3 4476271 YP_871298.1 CDS argS NC_008577.1 4412343 4414088 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 4412343..4414088 Shewanella sp. ANA-3 4476272 YP_871299.1 CDS Shewana3_3674 NC_008577.1 4414092 4414787 D PFAM: Sporulation domain protein; KEGG: son:SO4124 cell division protein FtsN, putative; sporulation domain-containing protein 4414092..4414787 Shewanella sp. ANA-3 4476273 YP_871300.1 CDS Shewana3_3675 NC_008577.1 4415091 4415315 D KEGG: son:SO4126 hypothetical protein; hypothetical protein 4415091..4415315 Shewanella sp. ANA-3 4476274 YP_871301.1 CDS Shewana3_3676 NC_008577.1 4415522 4416454 R PFAM: band 7 protein; KEGG: son:SO4128 SPFH domain/Band 7 family protein; hypothetical protein complement(4415522..4416454) Shewanella sp. ANA-3 4476275 YP_871302.1 CDS Shewana3_3677 NC_008577.1 4416454 4417389 R PFAM: band 7 protein; KEGG: son:SO4129 SPFH domain/Band 7 family protein; hypothetical protein complement(4416454..4417389) Shewanella sp. ANA-3 4476276 YP_871303.1 CDS Shewana3_3678 NC_008577.1 4417401 4417871 R PFAM: protein of unknown function DUF107; KEGG: son:SO4130 hypothetical protein; hypothetical protein complement(4417401..4417871) Shewanella sp. ANA-3 4476277 YP_871304.1 CDS Shewana3_3679 NC_008577.1 4418359 4419111 D KEGG: son:SO4131 hypothetical protein; hypothetical protein 4418359..4419111 Shewanella sp. ANA-3 4476278 YP_871305.1 CDS Shewana3_3680 NC_008577.1 4419221 4419979 R catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase complement(4419221..4419979) Shewanella sp. ANA-3 4476279 YP_871306.1 CDS Shewana3_3681 NC_008577.1 4420392 4420604 D PFAM: protein of unknown function DUF465; KEGG: son:SO4134 hypothetical protein; hypothetical protein 4420392..4420604 Shewanella sp. ANA-3 4476280 YP_871307.1 CDS Shewana3_3682 NC_008577.1 4420664 4421839 R PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: son:SO4136 decarboxylase, pyridoxal-dependent; ornithine decarboxylase complement(4420664..4421839) Shewanella sp. ANA-3 4476281 YP_871308.1 CDS Shewana3_3683 NC_008577.1 4422269 4422748 R KEGG: son:SO4138 hypothetical protein; hypothetical protein complement(4422269..4422748) Shewanella sp. ANA-3 4476282 YP_871309.1 CDS Shewana3_3684 NC_008577.1 4422917 4423753 D PFAM: MscS Mechanosensitive ion channel; KEGG: pca:Pcar_0306 hypothetical protein; mechanosensitive ion channel protein MscS 4422917..4423753 Shewanella sp. ANA-3 4479885 YP_871310.1 CDS Shewana3_3685 NC_008577.1 4423871 4425409 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO4139 hypothetical protein; Sel1 domain-containing protein 4423871..4425409 Shewanella sp. ANA-3 4479886 YP_871311.1 CDS Shewana3_3686 NC_008577.1 4425469 4426308 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4140 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4425469..4426308) Shewanella sp. ANA-3 4479887 YP_871312.1 CDS Shewana3_3687 NC_008577.1 4426470 4427201 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: son:SO4141 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 4426470..4427201 Shewanella sp. ANA-3 4479888 YP_871313.1 CDS Shewana3_3688 NC_008577.1 4427687 4428016 D KEGG: son:SO4142 cytochrome c family protein; cytochrome c family protein 4427687..4428016 Shewanella sp. ANA-3 4479889 YP_871314.1 CDS Shewana3_3689 NC_008577.1 4428195 4429925 D KEGG: son:SO4143 hypothetical protein; hypothetical protein 4428195..4429925 Shewanella sp. ANA-3 4479890 YP_871315.1 CDS Shewana3_3690 NC_008577.1 4429973 4431361 D KEGG: son:SO4144 cytochrome c, putative; cytochrome c 4429973..4431361 Shewanella sp. ANA-3 4479891 YP_871316.1 CDS Shewana3_3691 NC_008577.1 4431640 4432800 D PFAM: Benzoate membrane transport protein; sulphate transporter; KEGG: son:SO4150 transporter, putative; sulfate transporter 4431640..4432800 Shewanella sp. ANA-3 4479892 YP_871317.1 CDS Shewana3_3692 NC_008577.1 4432861 4433865 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: polysaccharide deacetylase; KEGG: son:SO4151 polysaccharide deacetylase family protein; polysaccharide deacetylase complement(4432861..4433865) Shewanella sp. ANA-3 4479893 YP_871318.1 CDS Shewana3_3693 NC_008577.1 4433862 4434506 R PFAM: protein of unknown function DUF1486; KEGG: son:SO4152 hypothetical protein; hypothetical protein complement(4433862..4434506) Shewanella sp. ANA-3 4479894 YP_871319.1 CDS Shewana3_3695 NC_008577.1 4435761 4436672 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4154 transcriptional regulator, LysR family; LysR family transcriptional regulator 4435761..4436672 Shewanella sp. ANA-3 4479896 YP_871320.1 CDS Shewana3_3696 NC_008577.1 4436758 4438536 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4155 sensor histidine kinase; histidine kinase complement(4436758..4438536) Shewanella sp. ANA-3 4479897 YP_871321.1 CDS Shewana3_3697 NC_008577.1 4438771 4439376 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: son:SO4157 DNA-binding response regulator; two component LuxR family transcriptional regulator 4438771..4439376 Shewanella sp. ANA-3 4479898 YP_871322.1 CDS Shewana3_3698 NC_008577.1 4439799 4440377 D PFAM: methylation site containing protein; KEGG: son:SO4159 hypothetical protein; methylation site containing protein 4439799..4440377 Shewanella sp. ANA-3 4479899 YP_871323.1 CDS Shewana3_3699 NC_008577.1 4440522 4441046 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4440522..4441046 Shewanella sp. ANA-3 4479900 YP_871324.1 CDS hslU NC_008577.1 4441065 4442393 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4441065..4442393 Shewanella sp. ANA-3 4479901 YP_871325.1 CDS Shewana3_3701 NC_008577.1 4442549 4442935 D PFAM: protein of unknown function DUF971; KEGG: son:SO4164 hypothetical protein; hypothetical protein 4442549..4442935 Shewanella sp. ANA-3 4479902 YP_871326.1 CDS Shewana3_3702 NC_008577.1 4443313 4443900 D KEGG: pae:PA0571 hypothetical protein; hypothetical protein 4443313..4443900 Shewanella sp. ANA-3 4479903 YP_871327.1 CDS Shewana3_3703 NC_008577.1 4444328 4445383 D KEGG: bms:BRA0375 hypothetical protein; hypothetical protein 4444328..4445383 Shewanella sp. ANA-3 4479904 YP_871328.1 CDS Shewana3_3704 NC_008577.1 4445925 4447502 D PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: son:SO4169 hypothetical protein; deoxyribodipyrimidine photolyase-like protein 4445925..4447502 Shewanella sp. ANA-3 4479905 YP_871329.1 CDS Shewana3_3705 NC_008577.1 4447529 4448239 D KEGG: son:SO4170 C factor cell-cell signaling protein; C factor cell-cell signaling protein 4447529..4448239 Shewanella sp. ANA-3 4479906 YP_871330.1 CDS Shewana3_3706 NC_008577.1 4448280 4448756 R KEGG: son:SO4171 hypothetical protein; hypothetical protein complement(4448280..4448756) Shewanella sp. ANA-3 4479907 YP_871331.1 CDS Shewana3_3707 NC_008577.1 4448788 4449339 R PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: son:SO4172 DNA-binding response regulator; response regulator receiver protein complement(4448788..4449339) Shewanella sp. ANA-3 4479908 YP_871332.1 CDS Shewana3_3708 NC_008577.1 4449336 4450625 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4173 sensor histidine kinase; ATPase domain-containing protein complement(4449336..4450625) Shewanella sp. ANA-3 4479909 YP_871333.1 CDS Shewana3_3709 NC_008577.1 4450618 4451547 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO4174 NAD dependent epimerase/dehydratase family protein; dTDP-4-dehydrorhamnose reductase complement(4450618..4451547) Shewanella sp. ANA-3 4479910 YP_871334.1 CDS Shewana3_3710 NC_008577.1 4451674 4453575 D KEGG: son:SO4176 hypothetical protein; hypothetical protein 4451674..4453575 Shewanella sp. ANA-3 4479911 YP_871335.1 CDS Shewana3_3711 NC_008577.1 4453577 4453942 R KEGG: son:SO4177 hypothetical protein; hypothetical protein complement(4453577..4453942) Shewanella sp. ANA-3 4479912 YP_871336.1 CDS Shewana3_3712 NC_008577.1 4454090 4455007 R PFAM: pseudouridine synthase; KEGG: rfr:Rfer_1895 pseudouridine synthase; pseudouridine synthase complement(4454090..4455007) Shewanella sp. ANA-3 4479913 YP_871337.1 CDS Shewana3_3713 NC_008577.1 4455060 4455635 R KEGG: son:SO4182 ATP-dependent protease La (LON) domain protein, putative; ATP-dependent protease La complement(4455060..4455635) Shewanella sp. ANA-3 4479914 YP_871338.1 CDS Shewana3_3714 NC_008577.1 4455779 4456834 R KEGG: hch:HCH_06703 hypothetical protein; hypothetical protein complement(4455779..4456834) Shewanella sp. ANA-3 4479915 YP_871339.1 CDS Shewana3_3715 NC_008577.1 4457096 4459534 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ilo:IL2271 outer membrane protein; TonB-dependent receptor 4457096..4459534 Shewanella sp. ANA-3 4479916 YP_871340.1 CDS Shewana3_3716 NC_008577.1 4459662 4460123 D PFAM: conserved hypothetical protein 22; KEGG: son:SO4189 hypothetical protein; hypothetical protein 4459662..4460123 Shewanella sp. ANA-3 4479917 YP_871341.1 CDS Shewana3_3717 NC_008577.1 4460267 4461187 D catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 4460267..4461187 Shewanella sp. ANA-3 4479918 YP_871342.1 CDS Shewana3_3718 NC_008577.1 4461356 4461967 D KEGG: son:SO4191 DedA family protein; DedA family protein 4461356..4461967 Shewanella sp. ANA-3 4479919 YP_871343.1 CDS Shewana3_3719 NC_008577.1 4461983 4463518 R KEGG: son:SO4193 hypothetical protein; hypothetical protein complement(4461983..4463518) Shewanella sp. ANA-3 4479920 YP_871344.1 CDS Shewana3_3720 NC_008577.1 4463658 4464698 R TIGRFAM: conserved hypothetical protein; KEGG: son:SO4194 hypothetical protein; hypothetical protein complement(4463658..4464698) Shewanella sp. ANA-3 4479921 YP_871345.1 CDS Shewana3_3721 NC_008577.1 4464772 4465284 R PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO4195 PAP2 family protein; PA-phosphatase-like phosphoesterase complement(4464772..4465284) Shewanella sp. ANA-3 4479922 YP_871346.1 CDS Shewana3_3722 NC_008577.1 4465641 4465895 R KEGG: son:SO4196 hypothetical protein; uroporphyrinogen decarboxylase complement(4465641..4465895) Shewanella sp. ANA-3 4479923 YP_871347.1 CDS Shewana3_3723 NC_008577.1 4466213 4466698 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4466213..4466698 Shewanella sp. ANA-3 4479924 YP_871348.1 CDS Shewana3_3724 NC_008577.1 4466829 4467881 D PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: son:SO4198 arginase family protein; arginase/agmatinase/formiminoglutamase 4466829..4467881 Shewanella sp. ANA-3 4479925 YP_871349.1 CDS Shewana3_3725 NC_008577.1 4468123 4468878 D TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4199 ubiquinone/menaquinone biosynthesis methlytransferase UbiE; demethylmenaquinone methyltransferase 4468123..4468878 Shewanella sp. ANA-3 4479926 YP_871350.1 CDS Shewana3_3726 NC_008577.1 4468878 4469498 D PFAM: protein of unknown function DUF1243; KEGG: son:SO4200 conserved hypothetical protein; hypothetical protein 4468878..4469498 Shewanella sp. ANA-3 4479927 YP_871351.1 CDS Shewana3_3727 NC_008577.1 4469495 4471144 D TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: son:SO4201 ubiquinone biosynthesis protein AarF; 2-octaprenylphenol hydroxylase 4469495..4471144 Shewanella sp. ANA-3 4479928 YP_871352.1 CDS Shewana3_3728 NC_008577.1 4471204 4471461 D TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: son:SO4202 Sec-independent protein translocase protein TatA; twin arginine-targeting protein translocase 4471204..4471461 Shewanella sp. ANA-3 4479929 YP_871353.1 CDS Shewana3_3729 NC_008577.1 4471468 4471911 D TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: son:SO4203 Sec-independent protein translocase protein TatB; twin-arginine translocation protein subunit TatB 4471468..4471911 Shewanella sp. ANA-3 4479930 YP_871354.1 CDS Shewana3_3730 NC_008577.1 4471915 4472664 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: son:SO4204 Sec-independent periplasmic protein translocation protein TatC; Sec-independent protein translocase TatC 4471915..4472664 Shewanella sp. ANA-3 4479931 YP_871355.1 CDS Shewana3_3731 NC_008577.1 4472709 4473239 D KEGG: son:SO4205 hypothetical protein; hypothetical protein 4472709..4473239 Shewanella sp. ANA-3 4479932 YP_871356.1 CDS Shewana3_3732 NC_008577.1 4473239 4474042 D PFAM: TatD-related deoxyribonuclease; KEGG: son:SO4206 hydrolase, TatD family; Sec-independent protein translocase TatD 4473239..4474042 Shewanella sp. ANA-3 4479933 YP_871357.1 CDS Shewana3_3733 NC_008577.1 4474035 4475912 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: son:SO4207 GGDEF domain protein; diguanylate cyclase 4474035..4475912 Shewanella sp. ANA-3 4479934 YP_871358.1 CDS Shewana3_3734 NC_008577.1 4475922 4476932 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 4475922..4476932 Shewanella sp. ANA-3 4479935 YP_871359.1 CDS Shewana3_3735 NC_008577.1 4489288 4492014 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(4489288..4492014) Shewanella sp. ANA-3 4479945 YP_871360.1 CDS Shewana3_3736 NC_008577.1 4492075 4492974 R PFAM: peptidase M23B; KEGG: son:SO4212 peptidase, M23/M37 family; peptidase M23B complement(4492075..4492974) Shewanella sp. ANA-3 4479946 YP_871361.1 CDS Shewana3_3737 NC_008577.1 4493002 4493448 D KEGG: son:SO4213 hypothetical protein; hypothetical protein 4493002..4493448 Shewanella sp. ANA-3 4479947 YP_871362.1 CDS lpxC NC_008577.1 4493462 4494382 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(4493462..4494382) Shewanella sp. ANA-3 4479948 YP_871363.1 CDS Shewana3_3739 NC_008577.1 4494563 4495750 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(4494563..4495750) Shewanella sp. ANA-3 4479949 YP_871364.1 CDS Shewana3_3740 NC_008577.1 4495778 4497013 R PFAM: cell division protein FtsA; KEGG: son:SO4216 cell division protein FtsA; cell division protein FtsA complement(4495778..4497013) Shewanella sp. ANA-3 4479950 YP_871365.1 CDS Shewana3_3741 NC_008577.1 4496994 4497743 R PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: son:SO4217 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein complement(4496994..4497743) Shewanella sp. ANA-3 4479951 YP_871366.1 CDS murC NC_008577.1 4497895 4499361 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(4497895..4499361) Shewanella sp. ANA-3 4479952 YP_871367.1 CDS murG NC_008577.1 4499364 4500452 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(4499364..4500452) Shewanella sp. ANA-3 4479953 YP_871368.1 CDS Shewana3_3744 NC_008577.1 4500452 4501663 R TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: son:SO4220 cell division protein FtsW; cell division protein FtsW complement(4500452..4501663) Shewanella sp. ANA-3 4479954 YP_871369.1 CDS murD NC_008577.1 4501653 4502972 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(4501653..4502972) Shewanella sp. ANA-3 4479955 YP_871370.1 CDS mraY NC_008577.1 4502979 4504061 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(4502979..4504061) Shewanella sp. ANA-3 4479956 YP_871371.1 CDS Shewana3_3747 NC_008577.1 4504062 4505444 R TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: son:SO4223 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(4504062..4505444) Shewanella sp. ANA-3 4479957 YP_871372.1 CDS murE NC_008577.1 4505441 4506922 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(4505441..4506922) Shewanella sp. ANA-3 4479958 YP_871373.1 CDS Shewana3_3749 NC_008577.1 4506919 4508670 R PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: son:SO4225 peptidoglycan synthetase FtsI; peptidoglycan synthetase FtsI complement(4506919..4508670) Shewanella sp. ANA-3 4479959 YP_871374.1 CDS Shewana3_3750 NC_008577.1 4508684 4508998 R PFAM: cell division protein FtsL; KEGG: son:SO4226 cell division protein FtsL; cell division protein FtsL complement(4508684..4508998) Shewanella sp. ANA-3 4479960 YP_871375.1 CDS mraW NC_008577.1 4509011 4509952 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: son:SO4227 putative S-adenosyl methionine adenyltransferase; S-adenosyl-methyltransferase MraW complement(4509011..4509952) Shewanella sp. ANA-3 4479961 YP_871376.1 CDS Shewana3_3752 NC_008577.1 4509983 4510441 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(4509983..4510441) Shewanella sp. ANA-3 4479962 YP_871377.1 CDS Shewana3_3753 NC_008577.1 4510959 4511663 D KEGG: cps:CPS_0734 hypothetical protein; hypothetical protein 4510959..4511663 Shewanella sp. ANA-3 4479963 YP_871378.1 CDS Shewana3_3754 NC_008577.1 4511660 4512739 D PFAM: PepSY-associated TM helix domain protein; KEGG: ilo:IL1226 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF; PepSY-associated TM helix domain-containing protein 4511660..4512739 Shewanella sp. ANA-3 4479964 YP_871379.1 CDS Shewana3_3755 NC_008577.1 4512835 4513155 D KEGG: son:SO4229 hypothetical protein; hypothetical protein 4512835..4513155 Shewanella sp. ANA-3 4479965 YP_871380.1 CDS Shewana3_3756 NC_008577.1 4513224 4514708 R TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: son:SO4230 glycerol kinase; glycerol kinase complement(4513224..4514708) Shewanella sp. ANA-3 4479966 YP_871381.1 CDS Shewana3_3757 NC_008577.1 4514896 4516245 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: son:SO4232 long-chain fatty acid transport protein; aromatic hydrocarbon degradation membrane protein complement(4514896..4516245) Shewanella sp. ANA-3 4479967 YP_871382.1 CDS leuD NC_008577.1 4516774 4517379 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(4516774..4517379) Shewanella sp. ANA-3 4479968 YP_871383.1 CDS Shewana3_3759 NC_008577.1 4517404 4518828 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(4517404..4518828) Shewanella sp. ANA-3 4479969 YP_871384.1 CDS Shewana3_3760 NC_008577.1 4518828 4519922 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(4518828..4519922) Shewanella sp. ANA-3 4479970 YP_871385.1 CDS Shewana3_3761 NC_008577.1 4519974 4521542 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(4519974..4521542) Shewanella sp. ANA-3 4479971 YP_871386.1 CDS Shewana3_3762 NC_008577.1 4522039 4523817 D SMART: Tetratricopeptide domain protein; KEGG: son:SO4240 hypothetical protein; response regulator receiver protein 4522039..4523817 Shewanella sp. ANA-3 4479972 YP_871387.1 CDS Shewana3_3763 NC_008577.1 4523799 4525622 R TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; KEGG: son:SO4241 ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase RecQ complement(4523799..4525622) Shewanella sp. ANA-3 4479973 YP_871388.1 CDS Shewana3_3764 NC_008577.1 4525896 4526360 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: son:SO4242 hypothetical protein; hypothetical protein 4525896..4526360 Shewanella sp. ANA-3 4479974 YP_871389.1 CDS Shewana3_3765 NC_008577.1 4526576 4527463 D TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4243 rarD protein; transporter DMT superfamily protein 4526576..4527463 Shewanella sp. ANA-3 4479975 YP_871390.1 CDS Shewana3_3766 NC_008577.1 4527523 4528041 R KEGG: son:SO4244 hypothetical protein; hypothetical protein complement(4527523..4528041) Shewanella sp. ANA-3 4479976 YP_871391.1 CDS Shewana3_3767 NC_008577.1 4528145 4529482 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(4528145..4529482) Shewanella sp. ANA-3 4479977 YP_871392.1 CDS rpmG NC_008577.1 4529788 4529961 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(4529788..4529961) Shewanella sp. ANA-3 4479978 YP_871393.1 CDS rpmB NC_008577.1 4529968 4530204 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(4529968..4530204) Shewanella sp. ANA-3 4479979 YP_871394.1 CDS radC NC_008577.1 4530327 4531004 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(4530327..4531004) Shewanella sp. ANA-3 4479980 YP_871395.1 CDS Shewana3_3771 NC_008577.1 4531126 4532355 D TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: son:SO4249 DNA/pantothenate metabolism flavoprotein; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 4531126..4532355 Shewanella sp. ANA-3 4479981 YP_871396.1 CDS dut NC_008577.1 4532356 4532814 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 4532356..4532814 Shewanella sp. ANA-3 4479982 YP_871397.1 CDS slmA NC_008577.1 4532845 4533438 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 4532845..4533438 Shewanella sp. ANA-3 4479983 YP_871398.1 CDS Shewana3_3774 NC_008577.1 4533574 4535559 D PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; dienelactone hydrolase; KEGG: son:SO4252 prolyl oligopeptidase family protein; peptidase S9 prolyl oligopeptidase 4533574..4535559 Shewanella sp. ANA-3 4479984 YP_871399.1 CDS folE NC_008577.1 4535827 4536477 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 4535827..4536477 Shewanella sp. ANA-3 4479985 YP_871400.1 CDS pyrE NC_008577.1 4536571 4537218 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(4536571..4537218) Shewanella sp. ANA-3 4479986 YP_871401.1 CDS rph NC_008577.1 4537315 4538028 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(4537315..4538028) Shewanella sp. ANA-3 4479987 YP_871402.1 CDS Shewana3_3778 NC_008577.1 4538243 4539106 D TIGRFAM: conserved hypothetical protein; PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: son:SO4257 conserved hypothetical protein TIGR00255; hypothetical protein 4538243..4539106 Shewanella sp. ANA-3 4479988 YP_871403.1 CDS Shewana3_3779 NC_008577.1 4539288 4540502 D PFAM: phage integrase family protein; KEGG: son:SO4258 site-specific recombinase, phage integrase family; phage integrase family protein 4539288..4540502 Shewanella sp. ANA-3 4479989 YP_871404.1 CDS Shewana3_3780 NC_008577.1 4540573 4541397 D hypothetical protein 4540573..4541397 Shewanella sp. ANA-3 4479990 YP_871405.1 CDS Shewana3_3781 NC_008577.1 4541504 4541731 D hypothetical protein 4541504..4541731 Shewanella sp. ANA-3 4479991 YP_871406.1 CDS Shewana3_3782 NC_008577.1 4542160 4542978 D KEGG: son:SO4260 hypothetical protein; hypothetical protein 4542160..4542978 Shewanella sp. ANA-3 4479992 YP_871407.1 CDS Shewana3_3783 NC_008577.1 4543196 4543846 D KEGG: son:SO4261 hypothetical protein; hypothetical protein 4543196..4543846 Shewanella sp. ANA-3 4479993 YP_871408.1 CDS Shewana3_3784 NC_008577.1 4543903 4544562 R KEGG: ppr:PBPRC0061 hypothetical protein; hypothetical protein complement(4543903..4544562) Shewanella sp. ANA-3 4479994 YP_871409.1 CDS Shewana3_3785 NC_008577.1 4544823 4546913 D KEGG: vch:VC1764 hypothetical protein; hypothetical protein 4544823..4546913 Shewanella sp. ANA-3 4479995 YP_871410.1 CDS Shewana3_3786 NC_008577.1 4546917 4547648 D KEGG: vch:VC1763 chemotaxis protein MotB-related protein; chemotaxis protein MotB-like protein 4546917..4547648 Shewanella sp. ANA-3 4479996 YP_871411.1 CDS Shewana3_3787 NC_008577.1 4547669 4549096 D KEGG: vch:VC1762 hypothetical protein; hypothetical protein 4547669..4549096 Shewanella sp. ANA-3 4479997 YP_871412.1 CDS Shewana3_3788 NC_008577.1 4549096 4552542 D PFAM: SNF2-related protein; helicase domain protein; restriction endonuclease; SMART: DEAD/DEAH box helicase domain protein; KEGG: vch:VC1760 helicase, putative; SNF2-like protein 4549096..4552542 Shewanella sp. ANA-3 4479998 YP_871413.1 CDS Shewana3_3789 NC_008577.1 4552570 4553277 R PFAM: protein of unknown function DUF45; KEGG: son:SO0379 hypothetical protein; hypothetical protein complement(4552570..4553277) Shewanella sp. ANA-3 4479999 YP_871414.1 CDS Shewana3_3790 NC_008577.1 4553289 4556450 R KEGG: son:SO0380 type I restriction-modification system, R subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD/DEAH box helicase domain protein; HsdR family type I site-specific deoxyribonuclease complement(4553289..4556450) Shewanella sp. ANA-3 4480000 YP_871415.1 CDS Shewana3_3791 NC_008577.1 4556447 4557121 R hypothetical protein complement(4556447..4557121) Shewanella sp. ANA-3 4480001 YP_871416.1 CDS Shewana3_3792 NC_008577.1 4557109 4557960 R hypothetical protein complement(4557109..4557960) Shewanella sp. ANA-3 4480002 YP_871417.1 CDS Shewana3_3793 NC_008577.1 4557973 4559250 R PFAM: restriction modification system DNA specificity domain; KEGG: son:SO0382 type I restriction-modification system, S subunit; restriction modification system DNA specificity subunit complement(4557973..4559250) Shewanella sp. ANA-3 4480003 YP_871418.1 CDS Shewana3_3794 NC_008577.1 4559243 4560967 R TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: noc:Noc_2903 type I restriction-modification system M subunit; type I restriction-modification system, M subunit complement(4559243..4560967) Shewanella sp. ANA-3 4480004 YP_871419.1 CDS Shewana3_3795 NC_008577.1 4561118 4561792 D PFAM: HNH endonuclease; KEGG: mca:MCA0503 hypothetical protein; HNH endonuclease 4561118..4561792 Shewanella sp. ANA-3 4480005 YP_871420.1 CDS Shewana3_3796 NC_008577.1 4561828 4562625 D KEGG: dra:DR1144 hypothetical protein; hypothetical protein 4561828..4562625 Shewanella sp. ANA-3 4480006 YP_871421.1 CDS Shewana3_3797 NC_008577.1 4562861 4563577 R manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase complement(4562861..4563577) Shewanella sp. ANA-3 4480007 YP_871422.1 CDS Shewana3_3798 NC_008577.1 4563754 4564215 R PFAM: protein of unknown function DUF606; KEGG: son:SO0371 hypothetical protein; hypothetical protein complement(4563754..4564215) Shewanella sp. ANA-3 4480008 YP_871423.1 CDS Shewana3_3799 NC_008577.1 4564238 4564729 R PFAM: protein of unknown function DUF606; KEGG: son:SO0370 hypothetical protein; hypothetical protein complement(4564238..4564729) Shewanella sp. ANA-3 4480009 YP_871424.1 CDS Shewana3_3800 NC_008577.1 4564982 4565878 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0369 transcriptional regulator, LysR family; LysR family transcriptional regulator 4564982..4565878 Shewanella sp. ANA-3 4480010 YP_871425.1 CDS Shewana3_3801 NC_008577.1 4565981 4566457 D hypothetical protein 4565981..4566457 Shewanella sp. ANA-3 4480011 YP_871426.1 CDS Shewana3_3802 NC_008577.1 4566493 4568448 R KEGG: sde:Sde_3690 hypothetical protein; hypothetical protein complement(4566493..4568448) Shewanella sp. ANA-3 4480012 YP_871427.1 CDS Shewana3_3803 NC_008577.1 4568445 4568675 R PFAM: helix-turn-helix domain protein; KEGG: reu:Reut_A0999 helix-turn-helix motif; XRE family transcriptional regulator complement(4568445..4568675) Shewanella sp. ANA-3 4480013 YP_871428.1 CDS Shewana3_3804 NC_008577.1 4568836 4569951 R PFAM: filamentation induced by cAMP protein Fic; KEGG: son:SO0367 hypothetical protein; filamentation induced by cAMP protein fic complement(4568836..4569951) Shewanella sp. ANA-3 4480014 YP_871429.1 CDS Shewana3_3805 NC_008577.1 4570262 4571080 D KEGG: son:SO0366 hypothetical protein; hypothetical protein 4570262..4571080 Shewanella sp. ANA-3 4480015 YP_871430.1 CDS Shewana3_3806 NC_008577.1 4571101 4572588 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO0365 hypothetical permeases of the major facilitator superfamily; major facilitator superfamily transporter complement(4571101..4572588) Shewanella sp. ANA-3 4480016 YP_871431.1 CDS Shewana3_3807 NC_008577.1 4572643 4573707 R PFAM: aminoglycoside phosphotransferase; KEGG: son:SO0364 hypothetical protein; aminoglycoside phosphotransferase complement(4572643..4573707) Shewanella sp. ANA-3 4480017 YP_871432.1 CDS Shewana3_3808 NC_008577.1 4573700 4574572 R KEGG: son:SO0363 hypothetical protein; hypothetical protein complement(4573700..4574572) Shewanella sp. ANA-3 4480018 YP_871433.1 CDS Shewana3_3809 NC_008577.1 4574718 4576214 R KEGG: son:SO0362 hypothetical protein; hypothetical protein complement(4574718..4576214) Shewanella sp. ANA-3 4480019 YP_871434.1 CDS gmk NC_008577.1 4576589 4577212 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 4576589..4577212 Shewanella sp. ANA-3 4480020 YP_871435.1 CDS rpoZ NC_008577.1 4577271 4577549 D promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 4577271..4577549 Shewanella sp. ANA-3 4480021 YP_871436.1 CDS Shewana3_3812 NC_008577.1 4577593 4579695 D KEGG: son:SO0359 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 4577593..4579695 Shewanella sp. ANA-3 4480022 YP_871437.1 CDS Shewana3_3813 NC_008577.1 4579718 4580101 D TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: son:SO0358 endoribonuclease L-PSP, putative; putative endoribonuclease L-PSP 4579718..4580101 Shewanella sp. ANA-3 4480023 YP_871438.1 CDS Shewana3_3814 NC_008577.1 4580334 4581998 D PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO0355 AMP-binding protein; AMP-dependent synthetase and ligase 4580334..4581998 Shewanella sp. ANA-3 4480024 YP_871439.1 CDS Shewana3_3815 NC_008577.1 4582169 4583119 D TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: son:SO0354 sodium/calcium exchanger; CaCA family Na(+)/Ca(+) antiporter 4582169..4583119 Shewanella sp. ANA-3 4480025 YP_871440.1 CDS Shewana3_3816 NC_008577.1 4583296 4584000 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: son:SO0353 TPR domain protein; hypothetical protein 4583296..4584000 Shewanella sp. ANA-3 4480026 YP_871441.1 CDS Shewana3_3817 NC_008577.1 4584084 4585163 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: son:SO0352 sensor histidine kinase, putative; putative signal transduction histidine kinase 4584084..4585163 Shewanella sp. ANA-3 4480027 YP_871442.1 CDS Shewana3_3818 NC_008577.1 4585163 4585759 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: son:SO0351 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 4585163..4585759 Shewanella sp. ANA-3 4480028 YP_871443.1 CDS Shewana3_3819 NC_008577.1 4585765 4586880 R KEGG: son:SO0350 hypothetical protein; hypothetical protein complement(4585765..4586880) Shewanella sp. ANA-3 4480029 YP_871444.1 CDS Shewana3_3820 NC_008577.1 4587097 4588623 D KEGG: son:SO0349 magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 4587097..4588623 Shewanella sp. ANA-3 4480030 YP_871445.1 CDS Shewana3_3821 NC_008577.1 4588724 4589617 D PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0348 acyltransferase family protein; putative acyltransferase 4588724..4589617 Shewanella sp. ANA-3 4480031 YP_871446.1 CDS Shewana3_3822 NC_008577.1 4589625 4590566 D PFAM: phospholipid/glycerol acyltransferase; KEGG: son:SO0347 acyltransferase family protein; putative acyltransferase 4589625..4590566 Shewanella sp. ANA-3 4480032 YP_871447.1 CDS Shewana3_3823 NC_008577.1 4590627 4591100 R PFAM: protein of unknown function DUF523; KEGG: ppu:PP5158 hypothetical protein; hypothetical protein complement(4590627..4591100) Shewanella sp. ANA-3 4480033 YP_871448.1 CDS Shewana3_3824 NC_008577.1 4591449 4592237 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: son:SO0346 transcriptional regulator GntR family; GntR family transcriptional regulator 4591449..4592237 Shewanella sp. ANA-3 4480034 YP_871449.1 CDS prpB NC_008577.1 4592304 4593182 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 4592304..4593182 Shewanella sp. ANA-3 4480035 YP_871450.1 CDS Shewana3_3826 NC_008577.1 4593416 4594543 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 4593416..4594543 Shewanella sp. ANA-3 4480036 YP_871451.2 CDS Shewana3_3827 NC_008577.1 4594667 4597258 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 4594667..4597258 Shewanella sp. ANA-3 4480037 YP_871452.1 CDS Shewana3_3828 NC_008577.1 4597388 4598581 D TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: son:SO0342 hypothetical protein; methylitaconate delta2-delta3-isomerase 4597388..4598581 Shewanella sp. ANA-3 4480038 YP_871453.1 CDS Shewana3_3829 NC_008577.1 4598860 4603377 D KEGG: son:SO0341 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Two component regulator propeller; Two component regulator three Y domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4598860..4603377 Shewanella sp. ANA-3 4480039 YP_871454.1 CDS Shewana3_3830 NC_008577.1 4603436 4604527 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(4603436..4604527) Shewanella sp. ANA-3 4480040 YP_871455.1 CDS Shewana3_3831 NC_008577.1 4604684 4605541 R KEGG: hch:HCH_00871 uncharacterized secreted protein; hypothetical protein complement(4604684..4605541) Shewanella sp. ANA-3 4480041 YP_871456.1 CDS Shewana3_3832 NC_008577.1 4605570 4605836 D PFAM: Modulator of Rho-dependent transcription termination; KEGG: son:SO0339 hypothetical transcriptional antiterminator; transcriptional antiterminator Rof 4605570..4605836 Shewanella sp. ANA-3 4480042 YP_871457.1 CDS Shewana3_3833 NC_008577.1 4605854 4606189 D KEGG: son:SO0338 hypothetical protein; hypothetical protein 4605854..4606189 Shewanella sp. ANA-3 4480043 YP_871458.1 CDS Shewana3_3834 NC_008577.1 4606348 4606704 R PFAM: Endoribonuclease L-PSP; KEGG: son:SO0337 hypothetical translation initiation inhibitor, YjgF family; endoribonuclease L-PSP complement(4606348..4606704) Shewanella sp. ANA-3 4480044 YP_871459.1 CDS Shewana3_3835 NC_008577.1 4606761 4608266 R PFAM: Na+/H+ antiporter NhaC; KEGG: son:SO0336 hypothetical Na+/H+ antiporter; Na+/H+ antiporter NhaC complement(4606761..4608266) Shewanella sp. ANA-3 4480045 YP_871460.1 CDS Shewana3_3836 NC_008577.1 4608446 4608667 D PFAM: protein of unknown function DUF904; KEGG: son:SO0335 hypothetical protein; hypothetical protein 4608446..4608667 Shewanella sp. ANA-3 4480046 YP_871461.1 CDS Shewana3_3837 NC_008577.1 4608664 4608876 R PFAM: protein of unknown function DUF1107; KEGG: son:SO0334 hypothetical protein; hypothetical protein complement(4608664..4608876) Shewanella sp. ANA-3 4480047 YP_871462.1 CDS Shewana3_3838 NC_008577.1 4609339 4609950 R PFAM: DSBA oxidoreductase; KEGG: son:SO0333 thiol:disulfide interchange protein DsbA; DSBA oxidoreductase complement(4609339..4609950) Shewanella sp. ANA-3 4480048 YP_871463.1 CDS Shewana3_3839 NC_008577.1 4610078 4611070 R catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase complement(4610078..4611070) Shewanella sp. ANA-3 4480049 YP_871464.1 CDS Shewana3_3840 NC_008577.1 4611126 4611443 R KEGG: son:SO0331 hypothetical protein; hypothetical protein complement(4611126..4611443) Shewanella sp. ANA-3 4480050 YP_871465.1 CDS Shewana3_3841 NC_008577.1 4611431 4612885 R PFAM: protein of unknown function UPF0061; KEGG: son:SO0330 hypothetical protein; hypothetical protein complement(4611431..4612885) Shewanella sp. ANA-3 4480051 YP_871466.1 CDS Shewana3_3842 NC_008577.1 4612897 4613247 R KEGG: son:SO0329 hypothetical protein; hypothetical protein complement(4612897..4613247) Shewanella sp. ANA-3 4480052 YP_871467.1 CDS Shewana3_3843 NC_008577.1 4613423 4614334 R KEGG: son:SO0326 hypothetical protein; hypothetical protein complement(4613423..4614334) Shewanella sp. ANA-3 4480053 YP_871468.1 CDS Shewana3_3844 NC_008577.1 4614586 4614945 D PFAM: DsrE family protein; KEGG: son:SO0325 DsrE-related protein; DsrE family protein 4614586..4614945 Shewanella sp. ANA-3 4480054 YP_871469.1 CDS Shewana3_3845 NC_008577.1 4615050 4615451 D KEGG: son:SO0324 hypothetical protein; hypothetical protein 4615050..4615451 Shewanella sp. ANA-3 4480055 YP_871470.1 CDS Shewana3_3846 NC_008577.1 4615507 4616439 D KEGG: son:SO0323 hypothetical protein; hypothetical protein 4615507..4616439 Shewanella sp. ANA-3 4480056 YP_871471.1 CDS Shewana3_3847 NC_008577.1 4616578 4617159 D KEGG: son:SO0322 hypothetical protein; hypothetical protein 4616578..4617159 Shewanella sp. ANA-3 4480057 YP_871472.1 CDS Shewana3_3848 NC_008577.1 4618877 4619962 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sru:SRU_0084 putative transport/efflux transmembrane protein; RND family efflux transporter MFP subunit 4618877..4619962 Shewanella sp. ANA-3 4480058 YP_871473.1 CDS Shewana3_3849 NC_008577.1 4619966 4622995 D PFAM: acriflavin resistance protein; KEGG: sru:SRU_0085 transporter, AcrB/D/F family; acriflavin resistance protein 4619966..4622995 Shewanella sp. ANA-3 4480059 YP_871474.1 CDS Shewana3_3850 NC_008577.1 4623021 4623644 R PFAM: regulatory protein, TetR; KEGG: pfo:Pfl_2737 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4623021..4623644) Shewanella sp. ANA-3 4480060 YP_871475.1 CDS Shewana3_3851 NC_008577.1 4624559 4625701 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mag:amb1345 response regulator; diguanylate cyclase 4624559..4625701 Shewanella sp. ANA-3 4480061 YP_871476.1 CDS Shewana3_3852 NC_008577.1 4626579 4627190 R CRISPR-associated Csy4 family protein complement(4626579..4627190) Shewanella sp. ANA-3 4480062 YP_871477.1 CDS Shewana3_3853 NC_008577.1 4627192 4628241 R TIGRFAM: CRISPR-associated protein, Csy3 family; KEGG: noc:Noc_2754 hypothetical protein; CRISPR-associated Csy3 family protein complement(4627192..4628241) Shewanella sp. ANA-3 4480063 YP_871478.1 CDS Shewana3_3854 NC_008577.1 4628251 4630356 R KEGG: vpa:VPA1388 hypothetical protein; hypothetical protein complement(4628251..4630356) Shewanella sp. ANA-3 4480064 YP_871479.1 CDS Shewana3_3855 NC_008577.1 4630350 4631582 R KEGG: vpa:VPA1387 hypothetical protein; hypothetical protein complement(4630350..4631582) Shewanella sp. ANA-3 4480065 YP_871480.1 CDS Shewana3_3856 NC_008577.1 4631838 4633280 R KEGG: mlo:mlr6204 hypothetical protein; hypothetical protein complement(4631838..4633280) Shewanella sp. ANA-3 4480066 YP_871481.1 CDS Shewana3_3857 NC_008577.1 4633270 4634691 R KEGG: mlo:mlr6203 hypothetical protein; hypothetical protein complement(4633270..4634691) Shewanella sp. ANA-3 4480067 YP_871482.1 CDS Shewana3_3858 NC_008577.1 4635670 4635972 R hypothetical protein complement(4635670..4635972) Shewanella sp. ANA-3 4480068 YP_871483.1 CDS Shewana3_3859 NC_008577.1 4636213 4636524 R PFAM: helix-turn-helix domain protein; KEGG: ppr:PBPRA1807 putative transcriptional regulator; XRE family transcriptional regulator complement(4636213..4636524) Shewanella sp. ANA-3 4480069 YP_871484.1 CDS Shewana3_3860 NC_008577.1 4636729 4637265 D KEGG: ppr:PBPRA1806 hypothetical protein; hypothetical protein 4636729..4637265 Shewanella sp. ANA-3 4480070 YP_871485.1 CDS Shewana3_3861 NC_008577.1 4637378 4638337 R KEGG: tcx:Tcr_0376 hypothetical protein; hypothetical protein complement(4637378..4638337) Shewanella sp. ANA-3 4480071 YP_871486.1 CDS Shewana3_3862 NC_008577.1 4638394 4640247 R PFAM: Integrase, catalytic region; KEGG: ppr:PBPRA0979 putative transposase; integrase catalytic subunit complement(4638394..4640247) Shewanella sp. ANA-3 4480072 YP_871487.1 CDS Shewana3_3863 NC_008577.1 4640244 4640873 R hypothetical protein complement(4640244..4640873) Shewanella sp. ANA-3 4480073 YP_871488.1 CDS Shewana3_3864 NC_008577.1 4641038 4641688 R KEGG: son:SO0321 hypothetical protein; hypothetical protein complement(4641038..4641688) Shewanella sp. ANA-3 4480074 YP_871489.1 CDS Shewana3_3865 NC_008577.1 4641763 4642800 R PFAM: acyltransferase 3; KEGG: son:SO0320 hypothetical protein; acyltransferase 3 complement(4641763..4642800) Shewanella sp. ANA-3 4480075 YP_871490.1 CDS Shewana3_3866 NC_008577.1 4642802 4644199 R KEGG: son:SO0319 hypothetical protein; hypothetical protein complement(4642802..4644199) Shewanella sp. ANA-3 4480076 YP_871491.1 CDS Shewana3_3867 NC_008577.1 4644378 4644728 R PFAM: protein of unknown function DUF1232; KEGG: son:SO0318 hypothetical protein; hypothetical protein complement(4644378..4644728) Shewanella sp. ANA-3 4480077 YP_871492.1 CDS Shewana3_3868 NC_008577.1 4644760 4645518 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: son:SO0317 transcriptional regulator, AraC/XylS family; AraC family transcriptional regulator complement(4644760..4645518) Shewanella sp. ANA-3 4480078 YP_871493.1 CDS Shewana3_3869 NC_008577.1 4645536 4646084 R TIGRFAM: YbhB and YbcL; PFAM: PEBP family protein; KEGG: son:SO0316 hypothetical phosphatidylethanolamine-binding protein; PBP family phospholipid-binding protein complement(4645536..4646084) Shewanella sp. ANA-3 4480079 YP_871494.1 CDS Shewana3_3870 NC_008577.1 4646566 4646670 D KEGG: vch:VCA1065 hypothetical protein; hypothetical protein 4646566..4646670 Shewanella sp. ANA-3 4480080 YP_871495.1 CDS Shewana3_3871 NC_008577.1 4646982 4649144 D PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: son:SO0314 ornithine decarboxylase, inducible; ornithine decarboxylase 4646982..4649144 Shewanella sp. ANA-3 4480081 YP_871496.1 CDS potE NC_008577.1 4649230 4650549 D catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 4649230..4650549 Shewanella sp. ANA-3 4480082 YP_871497.1 CDS Shewana3_3873 NC_008577.1 4650674 4651828 D PFAM: porin, Gram-negative type; KEGG: son:SO0312 outer membrane porin, putative; porin 4650674..4651828 Shewanella sp. ANA-3 4480083 YP_871498.1 CDS Shewana3_3874 NC_008577.1 4652032 4654377 R PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: son:SO0311 hypothetical Fe-S oxidoreductase; hypothetical protein complement(4652032..4654377) Shewanella sp. ANA-3 4480084 YP_871499.1 CDS Shewana3_3875 NC_008577.1 4654590 4654988 R KEGG: son:SO0309 hypothetical protein; hypothetical protein complement(4654590..4654988) Shewanella sp. ANA-3 4480085 YP_871500.1 CDS Shewana3_3876 NC_008577.1 4655144 4656364 D PFAM: protein of unknown function DUF1212; KEGG: son:SO0308 hypothetical protein; hypothetical protein 4655144..4656364 Shewanella sp. ANA-3 4480086 YP_871501.1 CDS Shewana3_3877 NC_008577.1 4656538 4658178 D KEGG: son:SO0306 hypothetical protein; hypothetical protein 4656538..4658178 Shewanella sp. ANA-3 4480087 YP_871502.1 CDS Shewana3_3878 NC_008577.1 4658311 4658817 D KEGG: son:SO0302 hypothetical protein; hypothetical protein 4658311..4658817 Shewanella sp. ANA-3 4480088 YP_871503.1 CDS Shewana3_3879 NC_008577.1 4659362 4660207 R TIGRFAM: Protein of unknown function UPF0011; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: son:SO0301 hypothetical methyltransferase; hypothetical protein complement(4659362..4660207) Shewanella sp. ANA-3 4480090 YP_871504.1 CDS Shewana3_3880 NC_008577.1 4660296 4662179 D PFAM: LppC family lipoprotein; KEGG: son:SO0300 lipoprotein, putative; LppC family lipoprotein 4660296..4662179 Shewanella sp. ANA-3 4480091 YP_871505.1 CDS Shewana3_3881 NC_008577.1 4662176 4662502 D PFAM: protein of unknown function UPF0102; KEGG: son:SO0299 predicted endonuclease; hypothetical protein 4662176..4662502 Shewanella sp. ANA-3 4480092 YP_871506.1 CDS Shewana3_3882 NC_008577.1 4662609 4663202 D TIGRFAM: phosphoheptose isomerase; KEGG: son:SO0298 phosphoheptose isomerase; phosphoheptose isomerase 4662609..4663202 Shewanella sp. ANA-3 4480093 YP_871507.1 CDS Shewana3_3883 NC_008577.1 4663199 4663765 D PFAM: transport-associated; KEGG: son:SO0297 lipoprotein, putative; transport-associated 4663199..4663765 Shewanella sp. ANA-3 4480094 YP_871508.1 CDS Shewana3_3884 NC_008577.1 4663784 4664704 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO0296 integral membrane domain protein; hypothetical protein complement(4663784..4664704) Shewanella sp. ANA-3 4480095 YP_871509.1 CDS Shewana3_3885 NC_008577.1 4664825 4665697 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO0295 transcriptional regulator, LysR family; LysR family transcriptional regulator 4664825..4665697 Shewanella sp. ANA-3 4480096 YP_871510.1 CDS Shewana3_3886 NC_008577.1 4666071 4667069 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(4666071..4667069) Shewanella sp. ANA-3 4480097 YP_871511.1 CDS Shewana3_3887 NC_008577.1 4667106 4667789 R TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: son:SO0293 phosphoglycolate phosphatase; phosphoglycolate phosphatase complement(4667106..4667789) Shewanella sp. ANA-3 4480098 YP_871512.1 CDS Shewana3_3888 NC_008577.1 4667789 4668466 R PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'-phosphate decarboxylase; KEGG: son:SO0292 ribulose-phosphate 3-epimerase; ribulose-5-phosphate 3-epimerase complement(4667789..4668466) Shewanella sp. ANA-3 4480099 YP_871513.1 CDS Shewana3_3889 NC_008577.1 4668729 4669094 D KEGG: son:SO0291 hypothetical protein; hypothetical protein 4668729..4669094 Shewanella sp. ANA-3 4480100 YP_871514.1 CDS Shewana3_3890 NC_008577.1 4669094 4669279 D KEGG: son:SO0290 hypothetical protein; hypothetical protein 4669094..4669279 Shewanella sp. ANA-3 4480101 YP_871515.1 CDS Shewana3_3891 NC_008577.1 4669304 4670143 R TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: son:SO0289 DNA adenine methylase; DNA adenine methylase complement(4669304..4670143) Shewanella sp. ANA-3 4480102 YP_871516.1 CDS Shewana3_3892 NC_008577.1 4670192 4671607 R PFAM: Sporulation domain protein; SMART: AAA ATPase; KEGG: son:SO0288 DamX domain protein; sporulation domain-containing protein complement(4670192..4671607) Shewanella sp. ANA-3 4480103 YP_871517.1 CDS aroB NC_008577.1 4671626 4672705 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(4671626..4672705) Shewanella sp. ANA-3 4480104 YP_871518.1 CDS aroK NC_008577.1 4672711 4673226 R type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I complement(4672711..4673226) Shewanella sp. ANA-3 4480105 YP_871519.1 CDS Shewana3_3895 NC_008577.1 4673446 4675500 R TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain protein; KEGG: son:SO0285 type IV pilus biogenesis protein PilQ; type IV pilus secretin PilQ complement(4673446..4675500) Shewanella sp. ANA-3 4480106 YP_871520.1 CDS Shewana3_3896 NC_008577.1 4675522 4676037 R PFAM: Pilus assembly protein, PilQ; KEGG: son:SO0284 type IV pilus biogenesis protein PilP; methyl-accepting chemotaxis sensory transducer complement(4675522..4676037) Shewanella sp. ANA-3 4480107 YP_871521.1 CDS Shewana3_3897 NC_008577.1 4676037 4676663 R PFAM: Pilus assembly protein, PilO; KEGG: son:SO0283 type IV pilus biogenesis protein PilO; pilus assembly protein, PilO complement(4676037..4676663) Shewanella sp. ANA-3 4480108 YP_871522.1 CDS Shewana3_3898 NC_008577.1 4676660 4677244 R PFAM: Fimbrial assembly family protein; KEGG: son:SO0282 type IV pilus biogenesis protein PilN; fimbrial assembly family protein complement(4676660..4677244) Shewanella sp. ANA-3 4480109 YP_871523.1 CDS Shewana3_3899 NC_008577.1 4677232 4678311 R TIGRFAM: type IV pilus assembly protein PilM; KEGG: son:SO0281 type IV pilus biogenesis protein PilM; type IV pilus assembly protein PilM complement(4677232..4678311) Shewanella sp. ANA-3 4480110 YP_871524.1 CDS Shewana3_3900 NC_008577.1 4678503 4681022 D TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: son:SO0280 penicillin-binding protein 1A; 1A family penicillin-binding protein 4678503..4681022 Shewanella sp. ANA-3 4480111 YP_871525.1 CDS Shewana3_3901 NC_008577.1 4681087 4682454 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(4681087..4682454) Shewanella sp. ANA-3 4480112 YP_871526.1 CDS Shewana3_3902 NC_008577.1 4682547 4683770 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(4682547..4683770) Shewanella sp. ANA-3 4480113 YP_871527.1 CDS Shewana3_3903 NC_008577.1 4683831 4684736 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(4683831..4684736) Shewanella sp. ANA-3 4480114 YP_871528.1 CDS Shewana3_3904 NC_008577.1 4684749 4685531 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(4684749..4685531) Shewanella sp. ANA-3 4480115 YP_871529.1 CDS argC NC_008577.1 4685563 4686543 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(4685563..4686543) Shewanella sp. ANA-3 4480116 YP_871530.1 CDS Shewana3_3906 NC_008577.1 4687214 4689883 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4687214..4689883 Shewanella sp. ANA-3 4480117 YP_871531.1 CDS Shewana3_3907 NC_008577.1 4689883 4690428 D PFAM: protein of unknown function DUF1439; KEGG: son:SO0273 hypothetical protein; hypothetical protein 4689883..4690428 Shewanella sp. ANA-3 4480118 YP_871532.1 CDS Shewana3_3908 NC_008577.1 4690526 4691803 R TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: son:SO0272 competence/damage-inducible protein CinA; competence/damage-inducible protein CinA complement(4690526..4691803) Shewanella sp. ANA-3 4480119 YP_871533.1 CDS Shewana3_3909 NC_008577.1 4697765 4698670 R TIGRFAM: DNA binding domain, excisionase family; KEGG: son:SO4502 hypothetical protein; DNA binding domain-containing protein complement(4697765..4698670) Shewanella sp. ANA-3 4480123 YP_871534.1 CDS Shewana3_3910 NC_008577.1 4698727 4699623 R KEGG: son:SO4503 formate dehydrogenase accessory protein FdhD, putative; formate dehydrogenase accessory protein FdhD complement(4698727..4699623) Shewanella sp. ANA-3 4480124 YP_871535.1 CDS Shewana3_3911 NC_008577.1 4699920 4700384 D KEGG: son:SO4504 hypothetical protein; hypothetical protein 4699920..4700384 Shewanella sp. ANA-3 4480125 YP_871536.1 CDS Shewana3_3912 NC_008577.1 4700384 4701052 D KEGG: son:SO4505 hypothetical protein; hypothetical protein 4700384..4701052 Shewanella sp. ANA-3 4480126 YP_871537.1 CDS Shewana3_3913 NC_008577.1 4701239 4702900 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4506 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 4701239..4702900 Shewanella sp. ANA-3 4480127 YP_871538.1 CDS Shewana3_3914 NC_008577.1 4702911 4703588 D PFAM: cytoplasmic chaperone TorD family protein; KEGG: son:SO4507 TorA specific chaperone, putative; cytoplasmic chaperone TorD family protein 4702911..4703588 Shewanella sp. ANA-3 4480128 YP_871539.1 CDS Shewana3_3915 NC_008577.1 4703756 4703953 D TIGRFAM: Twin-arginine translocation pathway signal; KEGG: son:SO4508 hypothetical protein; hypothetical protein 4703756..4703953 Shewanella sp. ANA-3 4480129 YP_871540.1 CDS Shewana3_3916 NC_008577.1 4703971 4706823 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4509 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 4703971..4706823 Shewanella sp. ANA-3 4480130 YP_871541.1 CDS Shewana3_3917 NC_008577.1 4706850 4707446 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4510 formate dehydrogenase, iron-sulfur subunit; 4Fe-4S ferredoxin 4706850..4707446 Shewanella sp. ANA-3 4480131 YP_871542.1 CDS Shewana3_3918 NC_008577.1 4707496 4708524 D TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO4511 formate dehydrogenase, C subunit, putative; formate dehydrogenase subunit gamma 4707496..4708524 Shewanella sp. ANA-3 4480132 YP_871543.1 CDS Shewana3_3919 NC_008577.1 4708905 4709105 D TIGRFAM: Twin-arginine translocation pathway signal; KEGG: son:SO4512 hypothetical protein; hypothetical protein 4708905..4709105 Shewanella sp. ANA-3 4480133 YP_871544.1 CDS Shewana3_3920 NC_008577.1 4709123 4711975 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: son:SO4513 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 4709123..4711975 Shewanella sp. ANA-3 4480134 YP_871545.1 CDS Shewana3_3921 NC_008577.1 4712005 4712574 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4514 formate dehydrogenase, iron-sulfur subunit; 4Fe-4S ferredoxin 4712005..4712574 Shewanella sp. ANA-3 4480135 YP_871546.1 CDS Shewana3_3922 NC_008577.1 4712651 4713634 D TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: son:SO4515 formate dehydrogenase, C subunit, putative; formate dehydrogenase subunit gamma 4712651..4713634 Shewanella sp. ANA-3 4480136 YP_871547.1 CDS Shewana3_3923 NC_008577.1 4713715 4715772 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4516 ferric vibriobactin receptor; TonB-dependent receptor complement(4713715..4715772) Shewanella sp. ANA-3 4480137 YP_871548.1 CDS Shewana3_3924 NC_008577.1 4716400 4717983 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppr:PBPRB0028 hypothetical methyl-accepting chemotaxisprotein; methyl-accepting chemotaxis sensory transducer 4716400..4717983 Shewanella sp. ANA-3 4480138 YP_871549.1 CDS Shewana3_3925 NC_008577.1 4718083 4719012 R PFAM: Bile acid:sodium symporter; KEGG: son:SO4519 sodium-dependent transporter; bile acid:sodium symporter complement(4718083..4719012) Shewanella sp. ANA-3 4480139 YP_871550.1 CDS Shewana3_3926 NC_008577.1 4719399 4720736 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4719399..4720736 Shewanella sp. ANA-3 4480140 YP_871551.1 CDS Shewana3_3927 NC_008577.1 4720852 4721085 D KEGG: son:SO4521 hypothetical protein; hypothetical protein 4720852..4721085 Shewanella sp. ANA-3 4480141 YP_871552.1 CDS Shewana3_3928 NC_008577.1 4721114 4722052 D KEGG: son:SO4522 hypothetical protein; hypothetical protein 4721114..4722052 Shewanella sp. ANA-3 4480142 YP_871553.1 CDS Shewana3_3929 NC_008577.1 4722110 4724101 R IrgA; binds ferric enterobactin; irgA gene expression is repressed by Fur and induced by the divergently transcribed upstream gene irgB; outer membrane protein; involved in iron metabolism; enterobactin receptor protein complement(4722110..4724101) Shewanella sp. ANA-3 4480143 YP_871554.1 CDS Shewana3_3930 NC_008577.1 4724223 4725185 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4524 transcriptional regulator, LysR family; LysR family transcriptional regulator 4724223..4725185 Shewanella sp. ANA-3 4480144 YP_871555.1 CDS Shewana3_3931 NC_008577.1 4725265 4726137 D PFAM: Patatin; KEGG: son:SO4525 hypothetical protein; patatin 4725265..4726137 Shewanella sp. ANA-3 4480145 YP_871556.1 CDS Shewana3_3932 NC_008577.1 4726130 4727065 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4525.1 hypothetical transcriptional regulator, LysR family; transcriptional regulator complement(4726130..4727065) Shewanella sp. ANA-3 4480146 YP_871557.1 CDS Shewana3_3933 NC_008577.1 4727066 4727920 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: son:SO4527 integral membrane domain protein; hypothetical protein complement(4727066..4727920) Shewanella sp. ANA-3 4480147 YP_871558.1 CDS Shewana3_3934 NC_008577.1 4728118 4728582 D TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: son:SO4529 RNA methyltransferase, TrmH family, group 2; RNA methyltransferase 4728118..4728582 Shewanella sp. ANA-3 4480148 YP_871559.1 CDS Shewana3_3935 NC_008577.1 4728836 4729150 R hypothetical protein complement(4728836..4729150) Shewanella sp. ANA-3 4480149 YP_871560.1 CDS Shewana3_3936 NC_008577.1 4729582 4731465 D KEGG: son:SO4068 hypothetical protein; hypothetical protein 4729582..4731465 Shewanella sp. ANA-3 4480150 YP_871561.1 CDS Shewana3_3937 NC_008577.1 4732119 4732673 R KEGG: son:SO4535 hypothetical protein; hypothetical protein complement(4732119..4732673) Shewanella sp. ANA-3 4480151 YP_871562.1 CDS Shewana3_3938 NC_008577.1 4732900 4734945 D PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: son:SO4537 peptidase, putative; peptidase S9 prolyl oligopeptidase 4732900..4734945 Shewanella sp. ANA-3 4480152 YP_871563.1 CDS Shewana3_3939 NC_008577.1 4735027 4736490 R PFAM: peptidase M16 domain protein; KEGG: ppr:PBPRB1337 hypothetical protein; DNA-directed RNA polymerase complement(4735027..4736490) Shewanella sp. ANA-3 4480153 YP_871564.1 CDS Shewana3_3940 NC_008577.1 4736487 4737818 R PFAM: peptidase M16 domain protein; KEGG: son:SO4537.2 hypothetical Zn-dependent peptidase; peptidase M16 domain-containing protein complement(4736487..4737818) Shewanella sp. ANA-3 4480154 YP_871565.1 CDS Shewana3_3941 NC_008577.1 4737956 4739368 R TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ilo:IL0586 metal-dependent hydrolase of the aminoacylase-2/carboxypeptidase-Z family; carboxypeptidase complement(4737956..4739368) Shewanella sp. ANA-3 4480155 YP_871566.1 CDS Shewana3_3942 NC_008577.1 4739687 4740682 D KEGG: rfr:Rfer_3046 transcriptional factor; hypothetical protein 4739687..4740682 Shewanella sp. ANA-3 4480156 YP_871567.1 CDS Shewana3_3943 NC_008577.1 4740699 4741901 D TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: noc:Noc_2855 cell division protein FtsZ; cell division protein FtsZ 4740699..4741901 Shewanella sp. ANA-3 4480157 YP_871568.1 CDS Shewana3_3944 NC_008577.1 4741918 4742556 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO4550 methyltransferase domain protein; type 11 methyltransferase complement(4741918..4742556) Shewanella sp. ANA-3 4480158 YP_871569.1 CDS Shewana3_3945 NC_008577.1 4742615 4742968 R KEGG: son:SO4551 hypothetical protein; hypothetical protein complement(4742615..4742968) Shewanella sp. ANA-3 4480159 YP_871570.1 CDS Shewana3_3946 NC_008577.1 4743262 4745382 D KEGG: son:SO4552 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4743262..4745382 Shewanella sp. ANA-3 4480160 YP_871571.1 CDS Shewana3_3947 NC_008577.1 4745650 4746252 R PFAM: DTW domain containing protein; KEGG: son:SO4554 hypothetical protein; DTW domain-containing protein complement(4745650..4746252) Shewanella sp. ANA-3 4480161 YP_871572.1 CDS Shewana3_3948 NC_008577.1 4746380 4747588 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO4555 drug resistance transporter, Bcr/CflA family protein; Bcr/CflA subfamily drug resistance transporter complement(4746380..4747588) Shewanella sp. ANA-3 4480162 YP_871573.1 CDS Shewana3_3949 NC_008577.1 4747704 4748663 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: son:SO4556 transcriptional regulator, LysR family; LysR family transcriptional regulator 4747704..4748663 Shewanella sp. ANA-3 4480163 YP_871574.1 CDS Shewana3_3950 NC_008577.1 4748726 4750597 R PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: son:SO4557 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(4748726..4750597) Shewanella sp. ANA-3 4480164 YP_871575.1 CDS Shewana3_3951 NC_008577.1 4751031 4751366 D KEGG: son:SO4558 hypothetical protein; hypothetical protein 4751031..4751366 Shewanella sp. ANA-3 4480165 YP_871576.1 CDS Shewana3_3952 NC_008577.1 4751369 4752826 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO4559 hypothetical protein; Sel1 domain-containing protein complement(4751369..4752826) Shewanella sp. ANA-3 4480166 YP_871577.1 CDS Shewana3_3953 NC_008577.1 4752863 4753570 R KEGG: son:SO4560 hypothetical protein; hypothetical protein complement(4752863..4753570) Shewanella sp. ANA-3 4480167 YP_871578.1 CDS Shewana3_3954 NC_008577.1 4753761 4754288 D KEGG: son:SO4561 hypothetical protein; hypothetical protein 4753761..4754288 Shewanella sp. ANA-3 4480168 YP_871579.1 CDS Shewana3_3955 NC_008577.1 4754385 4754846 D PFAM: protein of unknown function DUF1332; KEGG: son:SO4562 hypothetical protein; hypothetical protein 4754385..4754846 Shewanella sp. ANA-3 4480169 YP_871580.1 CDS Shewana3_3956 NC_008577.1 4754936 4755760 R KEGG: son:SO4563 hypothetical protein; putative signal transduction protein complement(4754936..4755760) Shewanella sp. ANA-3 4480170 YP_871581.1 CDS Shewana3_3957 NC_008577.1 4756056 4756667 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: son:SO4564 TonB2 protein, putative; TonB family protein 4756056..4756667 Shewanella sp. ANA-3 4480171 YP_871582.1 CDS Shewana3_3958 NC_008577.1 4756739 4758007 R uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH complement(4756739..4758007) Shewanella sp. ANA-3 4480172 YP_871583.1 CDS Shewana3_3959 NC_008577.1 4758190 4758666 D PFAM: regulatory protein, AsnC/Lrp family; KEGG: son:SO4567 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4758190..4758666 Shewanella sp. ANA-3 4480173 YP_871584.1 CDS Shewana3_3960 NC_008577.1 4758937 4759878 R PFAM: Polysulphide reductase, NrfD; KEGG: son:SO4568 formate-dependent nitrite reductase, nrfD protein; polysulfide reductase, NrfD complement(4758937..4759878) Shewanella sp. ANA-3 4480174 YP_871585.1 CDS Shewana3_3961 NC_008577.1 4759875 4760561 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: vvy:VV1252 formate-dependent nitrite reductase complex, Fe-S protein; 4Fe-4S ferredoxin complement(4759875..4760561) Shewanella sp. ANA-3 4480175 YP_871586.1 CDS Shewana3_3962 NC_008577.1 4760566 4761030 R KEGG: sfx:S3598 formate-dependent nitrite reductase; formate-dependent nitrite reductase complement(4760566..4761030) Shewanella sp. ANA-3 4480176 YP_871587.1 CDS Shewana3_3963 NC_008577.1 4761108 4761581 R hypothetical protein complement(4761108..4761581) Shewanella sp. ANA-3 4480177 YP_871588.1 CDS Shewana3_3964 NC_008577.1 4761996 4762964 D PFAM: regulatory protein, LysR; KEGG: son:SO4571 transcriptional regulator, LysR family; LysR family transcriptional regulator 4761996..4762964 Shewanella sp. ANA-3 4480178 YP_871589.1 CDS Shewana3_3965 NC_008577.1 4763139 4764860 D SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 4763139..4764860 Shewanella sp. ANA-3 4480179 YP_871590.1 CDS Shewana3_3966 NC_008577.1 4764860 4765663 D PFAM: alpha/beta hydrolase fold; KEGG: son:SO4574 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold domain-containing protein 4764860..4765663 Shewanella sp. ANA-3 4480180 YP_871591.1 CDS Shewana3_3967 NC_008577.1 4765686 4766735 D catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 4765686..4766735 Shewanella sp. ANA-3 4480181 YP_871592.1 CDS Shewana3_3968 NC_008577.1 4766742 4768205 D TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: son:SO4576 O-succinylbenzoic acid--CoA ligase; o-succinylbenzoate--CoA ligase 4766742..4768205 Shewanella sp. ANA-3 4480182 YP_871593.1 CDS Shewana3_3969 NC_008577.1 4768265 4769122 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(4768265..4769122) Shewanella sp. ANA-3 4480183 YP_871594.1 CDS Shewana3_3970 NC_008577.1 4769353 4770318 R PFAM: protein of unknown function DUF214; KEGG: son:SO4584 cell division ABC transporter, permease protein FtsX; cell division protein FtsX complement(4769353..4770318) Shewanella sp. ANA-3 4480184 YP_871595.1 CDS Shewana3_3971 NC_008577.1 4770315 4771016 R KEGG: son:SO4585 cell division ABC transporter, ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE complement(4770315..4771016) Shewanella sp. ANA-3 4480185 YP_871596.1 CDS Shewana3_3972 NC_008577.1 4771020 4772708 R KEGG: son:SO4586 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(4771020..4772708) Shewanella sp. ANA-3 4480186 YP_871597.1 CDS Shewana3_3973 NC_008577.1 4772922 4773569 D TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: son:SO4587 putative methylase; putative methyltransferase 4772922..4773569 Shewanella sp. ANA-3 4480187 YP_871598.1 CDS Shewana3_3974 NC_008577.1 4773571 4773843 D PFAM: protein of unknown function DUF1145; KEGG: son:SO4588 hypothetical protein; hypothetical protein 4773571..4773843 Shewanella sp. ANA-3 4480188 YP_871599.1 CDS Shewana3_3975 NC_008577.1 4773800 4774813 R PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: son:SO4589 transcriptional regulator, AraC family; transcriptional regulator complement(4773800..4774813) Shewanella sp. ANA-3 4480189 YP_871600.1 CDS Shewana3_3976 NC_008577.1 4774898 4775434 D PFAM: isochorismatase hydrolase; KEGG: son:SO4590 isochorismatase family protein; isochorismatase hydrolase 4774898..4775434 Shewanella sp. ANA-3 4480190 YP_871601.1 CDS Shewana3_3977 NC_008577.1 4775504 4776067 R PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO4591 tetraheme cytochrome c; NapC/NirT cytochrome c domain-containing protein complement(4775504..4776067) Shewanella sp. ANA-3 4480191 YP_871602.1 CDS Shewana3_3978 NC_008577.1 4776500 4776877 D KEGG: son:SO4592 hypothetical protein; hypothetical protein 4776500..4776877 Shewanella sp. ANA-3 4480192 YP_871603.1 CDS Shewana3_3979 NC_008577.1 4776973 4777431 D KEGG: son:SO4593 hypothetical protein; hypothetical protein 4776973..4777431 Shewanella sp. ANA-3 4480193 YP_871604.1 CDS Shewana3_3980 NC_008577.1 4777503 4777979 D KEGG: son:SO4594 hypothetical protein; hypothetical protein 4777503..4777979 Shewanella sp. ANA-3 4480194 YP_871605.1 CDS Shewana3_3981 NC_008577.1 4778160 4778462 D KEGG: son:SO4596 copper-transporting ATPase domain protein; copper-transporting ATPase domain-containing protein 4778160..4778462 Shewanella sp. ANA-3 4480195 YP_871606.1 CDS Shewana3_3982 NC_008577.1 4778484 4779986 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: son:SO4597 heavy metal efflux system protein, putative; RND family efflux transporter MFP subunit 4778484..4779986 Shewanella sp. ANA-3 4480196 YP_871607.1 CDS Shewana3_3983 NC_008577.1 4779996 4783133 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: son:SOA0153 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 4779996..4783133 Shewanella sp. ANA-3 4480197 YP_871608.1 CDS Shewana3_3984 NC_008577.1 4783312 4784469 D PFAM: ribonuclease T2; KEGG: son:SO4599 ribonuclease, T2 family; ribonuclease T2 4783312..4784469 Shewanella sp. ANA-3 4480198 YP_871609.1 CDS Shewana3_3985 NC_008577.1 4784692 4786653 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: vvy:VV1004 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4784692..4786653 Shewanella sp. ANA-3 4480199 YP_871610.1 CDS Shewana3_3986 NC_008577.1 4786767 4787543 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: son:SO4600 antigen, putative; glyoxalase/bleomycin resistance protein/dioxygenase complement(4786767..4787543) Shewanella sp. ANA-3 4480200 YP_871611.1 CDS Shewana3_3987 NC_008577.1 4787676 4788932 R TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; KEGG: son:SO4601 tryptophan-specific transport protein; aromatic amino acid transporter complement(4787676..4788932) Shewanella sp. ANA-3 4480201 YP_871612.1 CDS Shewana3_3988 NC_008577.1 4788932 4791355 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(4788932..4791355) Shewanella sp. ANA-3 4480202 YP_871613.1 CDS Shewana3_3989 NC_008577.1 4791517 4792137 D Represses a number of genes involved in the response to DNA damage; LexA repressor 4791517..4792137 Shewanella sp. ANA-3 4480203 YP_871614.1 CDS Shewana3_3990 NC_008577.1 4792134 4792646 D KEGG: son:SO4604 hypothetical protein; hypothetical protein 4792134..4792646 Shewanella sp. ANA-3 4480204 YP_871615.1 CDS Shewana3_3991 NC_008577.1 4793053 4794594 D PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: son:SO4606 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 4793053..4794594 Shewanella sp. ANA-3 4480205 YP_871616.1 CDS Shewana3_3992 NC_008577.1 4794604 4796196 D PFAM: cytochrome c oxidase, subunit I; KEGG: son:SO4607 cytochrome c oxidase, subunit I; cytochrome c oxidase subunit I 4794604..4796196 Shewanella sp. ANA-3 4480206 YP_871617.1 CDS Shewana3_3993 NC_008577.1 4796198 4796779 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 4796198..4796779 Shewanella sp. ANA-3 4480207 YP_871618.1 CDS Shewana3_3994 NC_008577.1 4796776 4797651 D PFAM: cytochrome c oxidase, subunit III; KEGG: son:SO4609 cytochrome c oxidase subunit III; cytochrome c oxidase subunit III 4796776..4797651 Shewanella sp. ANA-3 4480208 YP_871619.1 CDS Shewana3_3995 NC_008577.1 4797855 4798766 D KEGG: son:SO4611 hypothetical protein; hypothetical protein 4797855..4798766 Shewanella sp. ANA-3 4480209 YP_871620.1 CDS Shewana3_3996 NC_008577.1 4798834 4799379 D KEGG: son:SO4612 hypothetical protein; hypothetical protein 4798834..4799379 Shewanella sp. ANA-3 4480210 YP_871621.1 CDS Shewana3_3997 NC_008577.1 4799379 4800437 D PFAM: cytochrome oxidase assembly; KEGG: son:SO4613 cytochrome oxidase assembly protein, putative; cytochrome oxidase assembly 4799379..4800437 Shewanella sp. ANA-3 4480211 YP_871622.1 CDS Shewana3_3998 NC_008577.1 4800455 4801357 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 4800455..4801357 Shewanella sp. ANA-3 4480212 YP_871623.1 CDS Shewana3_3999 NC_008577.1 4801382 4802041 D PFAM: alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen; electron transport protein SCO1/SenC; KEGG: son:SO4615 SCO1/SenC family protein; electron transport protein SCO1/SenC 4801382..4802041 Shewanella sp. ANA-3 4480213 YP_871624.1 CDS Shewana3_4000 NC_008577.1 4802053 4803099 R PFAM: polysaccharide deacetylase; KEGG: son:SO4616 polysaccharide deacetylase family protein; polysaccharide deacetylase complement(4802053..4803099) Shewanella sp. ANA-3 4480214 YP_871625.1 CDS Shewana3_4001 NC_008577.1 4803122 4804489 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: son:SO4617 DNA-damage-inducible protein F; MATE efflux family protein 4803122..4804489 Shewanella sp. ANA-3 4480215 YP_871626.1 CDS Shewana3_4003 NC_008577.1 4806568 4807146 R cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein complement(4806568..4807146) Shewanella sp. ANA-3 4480217 YP_871627.1 CDS Shewana3_4004 NC_008577.1 4807374 4809122 R TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: son:SO4620 fumarate reductase, flavoprotein subunit precursor; flavocytochrome c complement(4807374..4809122) Shewanella sp. ANA-3 4480218 YP_871628.1 CDS Shewana3_4005 NC_008577.1 4809212 4809976 R KEGG: son:SO4621 hypothetical protein; hypothetical protein complement(4809212..4809976) Shewanella sp. ANA-3 4480219 YP_871629.1 CDS Shewana3_4006 NC_008577.1 4810164 4811405 R PFAM: histidine kinase A domain protein domain protein; KEGG: son:SO4622 sensor histidine kinase; histidine kinase A domain-containing protein complement(4810164..4811405) Shewanella sp. ANA-3 4480220 YP_871630.1 CDS Shewana3_4007 NC_008577.1 4811392 4812069 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4623 DNA-binding response regulator; two component transcriptional regulator complement(4811392..4812069) Shewanella sp. ANA-3 4480221 YP_871631.1 CDS Shewana3_4008 NC_008577.1 4812072 4812818 R PFAM: regulatory protein, LuxR; KEGG: son:SO4624 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(4812072..4812818) Shewanella sp. ANA-3 4480222 YP_871632.1 CDS Shewana3_4009 NC_008577.1 4812987 4813775 R KEGG: son:SO4625 competence protein ComF; competence protein ComF complement(4812987..4813775) Shewanella sp. ANA-3 4480223 YP_871633.1 CDS Shewana3_4010 NC_008577.1 4813801 4814595 D TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: son:SO4626 bioH protein; bioH protein 4813801..4814595 Shewanella sp. ANA-3 4480224 YP_871634.1 CDS Shewana3_4011 NC_008577.1 4814657 4815211 D KEGG: son:SO4627 hypothetical protein; hypothetical protein 4814657..4815211 Shewanella sp. ANA-3 4480225 YP_871635.1 CDS Shewana3_4012 NC_008577.1 4815278 4817242 R PFAM: sulfatase; KEGG: son:SO4628 sulfatase; sulfatase complement(4815278..4817242) Shewanella sp. ANA-3 4480226 YP_871636.1 CDS Shewana3_4013 NC_008577.1 4817460 4819799 R PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: son:SO4629 hypothetical protein; RNA-binding S1 domain-containing protein complement(4817460..4819799) Shewanella sp. ANA-3 4480227 YP_871637.1 CDS Shewana3_4014 NC_008577.1 4819929 4820432 R TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: son:SO4631 transcription elongation factor GreB; transcription elongation factor GreB complement(4819929..4820432) Shewanella sp. ANA-3 4480228 YP_871638.1 CDS Shewana3_4015 NC_008577.1 4820491 4821438 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: cvi:CV3504 probable two-component response regulator; response regulator receiver modulated diguanylate cyclase complement(4820491..4821438) Shewanella sp. ANA-3 4480229 YP_871639.1 CDS Shewana3_4016 NC_008577.1 4821438 4826318 R KEGG: cvi:CV1621 probable sensor/response regulatory hybrid protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; putative PAS/PAC sensor protein complement(4821438..4826318) Shewanella sp. ANA-3 4480230 YP_871640.1 CDS ompR NC_008577.1 4826687 4827412 D part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 4826687..4827412 Shewanella sp. ANA-3 4480231 YP_871641.1 CDS envZ NC_008577.1 4827452 4828768 D membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 4827452..4828768 Shewanella sp. ANA-3 4480232 YP_871642.1 CDS Shewana3_4019 NC_008577.1 4828885 4830861 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4635 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4828885..4830861 Shewanella sp. ANA-3 4480233 YP_871643.1 CDS Shewana3_4020 NC_008577.1 4830916 4831389 R PFAM: alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen; Redoxin domain protein; KEGG: son:SO4640 antioxidant, AhpC/Tsa family; redoxin domain-containing protein complement(4830916..4831389) Shewanella sp. ANA-3 4480234 YP_871644.1 CDS Shewana3_4021 NC_008577.1 4831588 4831938 R hypothetical protein complement(4831588..4831938) Shewanella sp. ANA-3 4480235 YP_871645.1 CDS Shewana3_4022 NC_008577.1 4832036 4832266 R hypothetical protein complement(4832036..4832266) Shewanella sp. ANA-3 4480236 YP_871646.1 CDS Shewana3_4023 NC_008577.1 4833345 4834289 R KEGG: son:SO4645 hypothetical protein; hypothetical protein complement(4833345..4834289) Shewanella sp. ANA-3 4480237 YP_871647.1 CDS Shewana3_4024 NC_008577.1 4834657 4834959 D PFAM: Propeptide, PepSY amd peptidase M4; KEGG: son:SO4646 hypothetical protein; peptidase 4834657..4834959 Shewanella sp. ANA-3 4480238 YP_871648.1 CDS Shewana3_4025 NC_008577.1 4834961 4835644 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4647 DNA-binding response regulator; two component transcriptional regulator 4834961..4835644 Shewanella sp. ANA-3 4480239 YP_871649.1 CDS Shewana3_4026 NC_008577.1 4835637 4837001 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4648 sensor histidine kinase; ATPase domain-containing protein 4835637..4837001 Shewanella sp. ANA-3 4480240 YP_871650.1 CDS Shewana3_4027 NC_008577.1 4837151 4838656 D KEGG: son:SO4649 hypothetical protein; hypothetical protein 4837151..4838656 Shewanella sp. ANA-3 4480241 YP_871651.1 CDS Shewana3_4028 NC_008577.1 4838711 4839187 R KEGG: son:SO4656 hypothetical protein; hypothetical protein complement(4838711..4839187) Shewanella sp. ANA-3 4480242 YP_871652.1 CDS Shewana3_4029 NC_008577.1 4839264 4842950 R KEGG: son:SO4656.2 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase complement(4839264..4842950) Shewanella sp. ANA-3 4480243 YP_871653.1 CDS Shewana3_4030 NC_008577.1 4843538 4843858 D hypothetical protein 4843538..4843858 Shewanella sp. ANA-3 4480244 YP_871654.1 CDS Shewana3_4031 NC_008577.1 4844048 4845076 D TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II; COX aromatic rich domain protein; KEGG: pha:PSHAa2231 ubiquinol oxidase polypeptide II (cytochrome o subunit 2) (oxidase BO(3) subunit 2) (cytochrome o ubiquinol oxidase subunit 2) (ubiquinol oxidase chain B); ubiquinol oxidase subunit II 4844048..4845076 Shewanella sp. ANA-3 4480245 YP_871655.1 CDS Shewana3_4032 NC_008577.1 4845079 4847058 D PFAM: cytochrome c oxidase, subunit I; KEGG: pha:PSHAa2230 ubiquinol oxidase polypeptide I (cytochrome o subunit 1) (oxidase BO(3) subunit 1) (cytochrome o ubiquinol oxidase subunit 1) (ubiquinol oxidase chain A); cytochrome c oxidase subunit I 4845079..4847058 Shewanella sp. ANA-3 4480246 YP_871656.1 CDS Shewana3_4033 NC_008577.1 4847060 4847680 D PFAM: cytochrome c oxidase, subunit III; KEGG: pha:PSHAa2229 cytochrome o ubiquinol oxidase subunit III (ubiquinol oxidase chain C); cytochrome c oxidase subunit III 4847060..4847680 Shewanella sp. ANA-3 4480247 YP_871657.1 CDS Shewana3_4034 NC_008577.1 4847680 4848021 D PFAM: cytochrome C oxidase subunit IV; KEGG: pha:PSHAa2228 cytochrome o ubiquinol oxidase protein (ubiquinol oxidase chain D); cytochrome C oxidase subunit IV 4847680..4848021 Shewanella sp. ANA-3 4480248 YP_871658.1 CDS Shewana3_4035 NC_008577.1 4848035 4848967 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 4848035..4848967 Shewanella sp. ANA-3 4480249 YP_871659.1 CDS Shewana3_4036 NC_008577.1 4849150 4850955 D PFAM: Amidohydrolase 3; KEGG: son:SOA0100 hypothetical protein; amidohydrolase 3 4849150..4850955 Shewanella sp. ANA-3 4480250 YP_871660.1 CDS Shewana3_4037 NC_008577.1 4851044 4851829 R PFAM: protein of unknown function DUF548; KEGG: son:SO4658 hypothetical protein; hypothetical protein complement(4851044..4851829) Shewanella sp. ANA-3 4480251 YP_871661.1 CDS Shewana3_4038 NC_008577.1 4851980 4852825 D PFAM: protein of unknown function DUF519; KEGG: son:SO4659 hypothetical protein; hypothetical protein 4851980..4852825 Shewanella sp. ANA-3 4480252 YP_871662.1 CDS Shewana3_4039 NC_008577.1 4852980 4853699 R PFAM: Lytic transglycosylase, catalytic; KEGG: son:SO4660 transglycosylase SLT domain protein; lytic transglycosylase, catalytic complement(4852980..4853699) Shewanella sp. ANA-3 4480253 YP_871663.1 CDS Shewana3_4040 NC_008577.1 4853699 4854727 R KEGG: son:SO4661 hypothetical protein; hypothetical protein complement(4853699..4854727) Shewanella sp. ANA-3 4480254 YP_871664.1 CDS Shewana3_4041 NC_008577.1 4854778 4855344 R PFAM: LemA family protein; KEGG: son:SO4662 lemA protein; LemA family protein complement(4854778..4855344) Shewanella sp. ANA-3 4480255 YP_871665.1 CDS Shewana3_4042 NC_008577.1 4855811 4857418 D PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; short chain fatty acid transporter; KEGG: ppr:PBPRA0142 putative efflux pump component MtrF; transporter AbgT 4855811..4857418 Shewanella sp. ANA-3 4480256 YP_871666.1 CDS Shewana3_4043 NC_008577.1 4857511 4857810 R hypothetical protein complement(4857511..4857810) Shewanella sp. ANA-3 4480257 YP_871667.1 CDS Shewana3_4044 NC_008577.1 4857858 4858154 R hypothetical protein complement(4857858..4858154) Shewanella sp. ANA-3 4480258 YP_871668.1 CDS Shewana3_4045 NC_008577.1 4858264 4861398 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: son:SO4692 AcrB/AcrD/AcrF family protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(4858264..4861398) Shewanella sp. ANA-3 4480259 YP_871669.1 CDS Shewana3_4046 NC_008577.1 4861408 4862556 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO4693 multidrug resistance protein, AcrA/AcrE family; RND family efflux transporter MFP subunit complement(4861408..4862556) Shewanella sp. ANA-3 4480260 YP_871670.1 CDS Shewana3_4047 NC_008577.1 4863399 4864145 D TIGRFAM: conserved hypothetical protein; KEGG: son:SO4694 hypothetical protein; hypothetical protein 4863399..4864145 Shewanella sp. ANA-3 4480261 YP_871671.1 CDS Shewana3_4048 NC_008577.1 4864248 4864937 R KEGG: son:SO4696 hypothetical 3-methyladenine DNA glycosylase; 3-methyladenine DNA glycosylase complement(4864248..4864937) Shewanella sp. ANA-3 4480262 YP_871672.1 CDS Shewana3_4049 NC_008577.1 4865141 4865788 D PFAM: Glutathione S-transferase, N-terminal domain protein; KEGG: son:SO4697 glutathione S-transferase; glutathione S-transferase domain-containing protein 4865141..4865788 Shewanella sp. ANA-3 4480263 YP_871673.1 CDS Shewana3_4050 NC_008577.1 4866065 4866595 R KEGG: son:SO4698 hypothetical protein; hypothetical protein complement(4866065..4866595) Shewanella sp. ANA-3 4480264 YP_871674.1 CDS Shewana3_4051 NC_008577.1 4866724 4868763 R PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: son:SO4699 oligopeptidase A; oligopeptidase A complement(4866724..4868763) Shewanella sp. ANA-3 4480265 YP_871675.1 CDS Shewana3_4052 NC_008577.1 4869032 4869820 D KEGG: son:SO4700 hypothetical protein; hypothetical protein 4869032..4869820 Shewanella sp. ANA-3 4480266 YP_871676.1 CDS Shewana3_4053 NC_008577.1 4869914 4870429 D KEGG: son:SO4701 hypothetical protein; hypothetical protein 4869914..4870429 Shewanella sp. ANA-3 4480267 YP_871677.1 CDS Shewana3_4054 NC_008577.1 4870597 4871952 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 4870597..4871952 Shewanella sp. ANA-3 4480268 YP_871678.1 CDS Shewana3_4055 NC_008577.1 4872457 4873953 D TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: cps:CPS_3463 proline/sodium symporter; sodium/proline symporter 4872457..4873953 Shewanella sp. ANA-3 4480269 YP_871679.1 CDS Shewana3_4056 NC_008577.1 4873963 4875069 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 4873963..4875069 Shewanella sp. ANA-3 4480270 YP_871680.1 CDS Shewana3_4057 NC_008577.1 4875081 4876328 D TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: pha:PSHAa0280 gamma-glutamyl phosphate reductase; glutamate-5-semialdehyde dehydrogenase 4875081..4876328 Shewanella sp. ANA-3 4480271 YP_871681.1 CDS Shewana3_4058 NC_008577.1 4876578 4878098 R PFAM: KAP P-loop domain protein; KEGG: vpa:VP2900 hypothetical protein; KAP P-loop domain-containing protein complement(4876578..4878098) Shewanella sp. ANA-3 4480272 YP_871682.1 CDS Shewana3_4059 NC_008577.1 4878341 4879873 R PFAM: helix-turn-helix domain protein; KEGG: son:SO4705 transcriptional regulator, putative; XRE family transcriptional regulator complement(4878341..4879873) Shewanella sp. ANA-3 4480273 YP_871683.1 CDS Shewana3_4060 NC_008577.1 4880082 4880645 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4880082..4880645 Shewanella sp. ANA-3 4480274 YP_871684.1 CDS Shewana3_4061 NC_008577.1 4880912 4881862 D PFAM: conserved hypothetical protein 698; KEGG: son:SO4708 hypothetical protein; hypothetical protein 4880912..4881862 Shewanella sp. ANA-3 4480275 YP_871685.1 CDS Shewana3_4062 NC_008577.1 4881912 4882064 R KEGG: son:SO4709 hypothetical protein; hypothetical protein complement(4881912..4882064) Shewanella sp. ANA-3 4480276 YP_871686.1 CDS Shewana3_4063 NC_008577.1 4882171 4882716 R SMART: regulatory protein, LuxR; KEGG: cps:CPS_1945 hypothetical protein; LuxR family transcriptional regulator complement(4882171..4882716) Shewanella sp. ANA-3 4480277 YP_871687.1 CDS Shewana3_4064 NC_008577.1 4882861 4884063 D KEGG: ilo:IL0061 outer membrane protein; hypothetical protein 4882861..4884063 Shewanella sp. ANA-3 4480278 YP_871688.1 CDS Shewana3_4065 NC_008577.1 4884060 4885088 D KEGG: cps:CPS_1944 hypothetical protein; hypothetical protein 4884060..4885088 Shewanella sp. ANA-3 4480279 YP_871689.1 CDS Shewana3_4066 NC_008577.1 4885090 4888143 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: cps:CPS_1943 cation efflux system protein CzcA; CzcA family heavy metal efflux protein 4885090..4888143 Shewanella sp. ANA-3 4480280 YP_871690.1 CDS Shewana3_4067 NC_008577.1 4888140 4888445 D KEGG: cps:CPS_1942 hypothetical protein; hypothetical protein 4888140..4888445 Shewanella sp. ANA-3 4480281 YP_871691.1 CDS Shewana3_4068 NC_008577.1 4888488 4889123 R KEGG: son:SO4710 hypothetical protein; hypothetical protein complement(4888488..4889123) Shewanella sp. ANA-3 4480282 YP_871692.1 CDS Shewana3_4069 NC_008577.1 4889225 4890415 R PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO4711 HD domain protein; metal dependent phosphohydrolase complement(4889225..4890415) Shewanella sp. ANA-3 4480283 YP_871693.1 CDS Shewana3_4070 NC_008577.1 4890793 4892157 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO4712 ABC transporter, ATP-binding protein, putative; ABC transporter-like protein complement(4890793..4892157) Shewanella sp. ANA-3 4480284 YP_871694.1 CDS Shewana3_4071 NC_008577.1 4892786 4894144 D TIGRFAM: isochorismate synthases; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: son:SO4713 menaquinone-specific isochorismate synthase, putative; isochorismate synthase 4892786..4894144 Shewanella sp. ANA-3 4480285 YP_871695.1 CDS Shewana3_4072 NC_008577.1 4894159 4894884 R KEGG: son:SO4714 hypothetical protein; hypothetical protein complement(4894159..4894884) Shewanella sp. ANA-3 4480286 YP_871696.1 CDS Shewana3_4073 NC_008577.1 4895133 4895786 D TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: son:SO4715 hypothetical protein; hypothetical protein 4895133..4895786 Shewanella sp. ANA-3 4480287 YP_871697.1 CDS Shewana3_4074 NC_008577.1 4895886 4896353 D KEGG: son:SO4716 acetyltransferase, GNAT family; acetyltransferase 4895886..4896353 Shewanella sp. ANA-3 4480288 YP_871698.1 CDS Shewana3_4075 NC_008577.1 4896609 4898744 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4717 sensor histidine kinase; ATPase domain-containing protein complement(4896609..4898744) Shewanella sp. ANA-3 4480289 YP_871699.1 CDS Shewana3_4076 NC_008577.1 4898745 4900127 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO4718 sigma-54 dependent response regulator; two component, sigma54 specific, Fis family transcriptional regulator complement(4898745..4900127) Shewanella sp. ANA-3 4480290 YP_871700.1 CDS Shewana3_4077 NC_008577.1 4900412 4901236 D PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO4719 putative sulfate transport system substrate-binding protein; extracellular solute-binding protein 4900412..4901236 Shewanella sp. ANA-3 4480291 YP_871701.1 CDS Shewana3_4078 NC_008577.1 4901233 4901940 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4720 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4901233..4901940 Shewanella sp. ANA-3 4480292 YP_871702.1 CDS Shewana3_4079 NC_008577.1 4901944 4902651 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO4721 ABC transporter, ATP-binding protein; ABC transporter-like protein 4901944..4902651 Shewanella sp. ANA-3 4480293 YP_871703.1 CDS Shewana3_4080 NC_008577.1 4902635 4903228 D TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: son:SO4722 molybdopterin-guanine dinucleotide biosynthesis protein; molybdenum cofactor guanylyltransferase 4902635..4903228 Shewanella sp. ANA-3 4480294 YP_871704.1 CDS Shewana3_4081 NC_008577.1 4903259 4905058 D TIGRFAM: molybdenum cofactor synthesis domain; molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin binding domain; molybdopterin-guanine dinucleotide biosynthesis MobB region; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: son:SO4723 molybdopterin biosynthesis MoeA protein, putative; putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA 4903259..4905058 Shewanella sp. ANA-3 4480295 YP_871705.1 CDS Shewana3_4082 NC_008577.1 4905075 4906058 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 4905075..4906058 Shewanella sp. ANA-3 4480296 YP_871706.1 CDS Shewana3_4083 NC_008577.1 4906140 4906595 D KEGG: son:SO4725 hypothetical protein; hypothetical protein 4906140..4906595 Shewanella sp. ANA-3 4480297 YP_871707.1 CDS Shewana3_4084 NC_008577.1 4906620 4907435 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 4906620..4907435 Shewanella sp. ANA-3 4480298 YP_871708.1 CDS Shewana3_4085 NC_008577.1 4907497 4909221 R PFAM: glycosyl transferase, family 39; KEGG: son:SO4690 hypothetical protein; glycosyl transferase family protein complement(4907497..4909221) Shewanella sp. ANA-3 4480299 YP_871709.1 CDS Shewana3_4086 NC_008577.1 4909235 4909894 R KEGG: son:SO4689 hypothetical protein; hypothetical protein complement(4909235..4909894) Shewanella sp. ANA-3 4480300 YP_871710.1 CDS Shewana3_4087 NC_008577.1 4909896 4910627 R PFAM: glycosyl transferase, family 2; KEGG: son:SO4688 glycosyl transferase, group 2 family protein; glycosyl transferase family protein complement(4909896..4910627) Shewanella sp. ANA-3 4480301 YP_871711.1 CDS Shewana3_4088 NC_008577.1 4910795 4912024 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: son:SO4687 UDP-glucose 6-dehydrogenase; phosphoglycerate mutase 4910795..4912024 Shewanella sp. ANA-3 4480302 YP_871712.1 CDS Shewana3_4089 NC_008577.1 4912049 4913056 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal; KEGG: son:SO4686 NAD dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 4912049..4913056 Shewanella sp. ANA-3 4480303 YP_871713.1 CDS Shewana3_4090 NC_008577.1 4913115 4914587 R KEGG: son:SO4685 hypothetical protein; hypothetical protein complement(4913115..4914587) Shewanella sp. ANA-3 4480304 YP_871714.1 CDS coaD NC_008577.1 4914654 4915145 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(4914654..4915145) Shewanella sp. ANA-3 4480305 YP_871715.1 CDS Shewana3_4092 NC_008577.1 4915179 4915388 R hypothetical protein complement(4915179..4915388) Shewanella sp. ANA-3 4480306 YP_871716.1 CDS Shewana3_4093 NC_008577.1 4915422 4916492 D PFAM: glycosyl transferase, group 1; KEGG: son:SO4682 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 4915422..4916492 Shewanella sp. ANA-3 4480307 YP_871717.1 CDS Shewana3_4094 NC_008577.1 4916524 4916904 D TIGRFAM: HAD-superfamily phosphatase, subfamily IIIC; capsule biosynthesis phosphatase; KEGG: vch:VC0232 hypothetical protein; capsule biosynthesis phosphatase 4916524..4916904 Shewanella sp. ANA-3 4480308 YP_871718.1 CDS Shewana3_4095 NC_008577.1 4916895 4918460 D KEGG: vch:VC0231 hypothetical protein; hypothetical protein 4916895..4918460 Shewanella sp. ANA-3 4480309 YP_871719.1 CDS Shewana3_4096 NC_008577.1 4918457 4919185 D KEGG: vch:VC0230 hypothetical protein; hypothetical protein 4918457..4919185 Shewanella sp. ANA-3 4480310 YP_871720.1 CDS Shewana3_4097 NC_008577.1 4919230 4920120 R KEGG: vch:VC0229 hypothetical protein; hypothetical protein complement(4919230..4920120) Shewanella sp. ANA-3 4480311 YP_871721.1 CDS Shewana3_4098 NC_008577.1 4920166 4921239 R PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: son:SO4680 hypothetical protein; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase complement(4920166..4921239) Shewanella sp. ANA-3 4480312 YP_871722.1 CDS Shewana3_4099 NC_008577.1 4921259 4922344 R PFAM: glycosyl transferase, group 1; KEGG: son:SO4679 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase complement(4921259..4922344) Shewanella sp. ANA-3 4480313 YP_871723.1 CDS Shewana3_4100 NC_008577.1 4922397 4923419 R PFAM: glycosyl transferase, family 9; KEGG: son:SO4678 heptosyl transferase, glycosyltransferase family 9 protein; glycosyl transferase family protein complement(4922397..4923419) Shewanella sp. ANA-3 4480314 YP_871724.1 CDS Shewana3_4101 NC_008577.1 4923529 4924281 D catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 4923529..4924281 Shewanella sp. ANA-3 4480315 YP_871725.1 CDS Shewana3_4102 NC_008577.1 4924296 4925621 R PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: son:SO4676 3-deoxy-D-manno-octulosonic-acid (KDO) transferase; coproporphyrinogen oxidase complement(4924296..4925621) Shewanella sp. ANA-3 4480316 YP_871726.1 CDS Shewana3_4103 NC_008577.1 4925816 4926463 D PFAM: regulatory protein, TetR; KEGG: son:SO4675 transcriptional regulator, TetR family; TetR family transcriptional regulator 4925816..4926463 Shewanella sp. ANA-3 4480317 YP_871727.1 CDS Shewana3_4104 NC_008577.1 4926723 4927916 D catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 4926723..4927916 Shewanella sp. ANA-3 4480318 YP_871728.1 CDS tdh NC_008577.1 4927928 4928953 D converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 4927928..4928953 Shewanella sp. ANA-3 4480319 YP_871729.1 CDS Shewana3_4106 NC_008577.1 4929052 4929357 D PFAM: Rhodanese domain protein; KEGG: son:SO4672 glpE protein; rhodanese domain-containing protein 4929052..4929357 Shewanella sp. ANA-3 4480320 YP_871730.1 CDS Shewana3_4107 NC_008577.1 4929354 4930196 D PFAM: Rhomboid family protein; KEGG: son:SO4671 glpG protein; rhomboid family protein 4929354..4930196 Shewanella sp. ANA-3 4480321 YP_871731.1 CDS Shewana3_4108 NC_008577.1 4930273 4930929 R PFAM: ThiJ/PfpI domain protein; KEGG: son:SO4670 enhancing lycopene biosynthesis protein; isoprenoid biosynthesis protein with amidotransferase-like domain complement(4930273..4930929) Shewanella sp. ANA-3 4480322 YP_871732.1 CDS Shewana3_4109 NC_008577.1 4931315 4934083 D KEGG: son:SO4669 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I 4931315..4934083 Shewanella sp. ANA-3 4480323 YP_871733.1 CDS engB NC_008577.1 4935061 4935720 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(4935061..4935720) Shewanella sp. ANA-3 4480324 YP_871734.1 CDS Shewana3_4111 NC_008577.1 4935890 4936513 D PFAM: cytochrome c, class I; KEGG: son:SO4666 cytochrome c; cytochrome c, class I 4935890..4936513 Shewanella sp. ANA-3 4480325 YP_871735.1 CDS Shewana3_4112 NC_008577.1 4936622 4936915 R hypothetical protein complement(4936622..4936915) Shewanella sp. ANA-3 4480326 YP_871736.1 CDS Shewana3_4113 NC_008577.1 4937337 4937975 D KEGG: son:SO4727 hypothetical protein; hypothetical protein 4937337..4937975 Shewanella sp. ANA-3 4480327 YP_871737.1 CDS Shewana3_4114 NC_008577.1 4938058 4938612 D PFAM: protein of unknown function DUF414; KEGG: son:SO4728 hypothetical protein; hypothetical protein 4938058..4938612 Shewanella sp. ANA-3 4480328 YP_871738.1 CDS Shewana3_4115 NC_008577.1 4938681 4939148 D KEGG: son:SO4729 hypothetical protein; hypothetical protein 4938681..4939148 Shewanella sp. ANA-3 4480329 YP_871739.1 CDS Shewana3_4116 NC_008577.1 4939443 4940783 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4939443..4940783 Shewanella sp. ANA-3 4480330 YP_871740.1 CDS Shewana3_4117 NC_008577.1 4940855 4941850 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(4940855..4941850) Shewanella sp. ANA-3 4480331 YP_871741.1 CDS Shewana3_4118 NC_008577.1 4942062 4943867 D PFAM: protein of unknown function DUF885; KEGG: son:SO4732 hypothetical protein; hypothetical protein 4942062..4943867 Shewanella sp. ANA-3 4480332 YP_871742.1 CDS Shewana3_4119 NC_008577.1 4943969 4944982 D PFAM: alpha/beta hydrolase fold; KEGG: son:SO4733 lysophospholipase L2; alpha/beta hydrolase fold domain-containing protein 4943969..4944982 Shewanella sp. ANA-3 4480333 YP_871743.1 CDS Shewana3_4120 NC_008577.1 4944939 4947389 R KEGG: son:SO4734 sensory box protein; TIGRFAM: PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; diguanylate phosphodiesterase complement(4944939..4947389) Shewanella sp. ANA-3 4480334 YP_871744.1 CDS Shewana3_4121 NC_008577.1 4953216 4954643 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4737 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin complement(4953216..4954643) Shewanella sp. ANA-3 4480338 YP_871745.1 CDS Shewana3_4122 NC_008577.1 4954735 4955085 D KEGG: son:SO4738 hypothetical protein; hypothetical protein 4954735..4955085 Shewanella sp. ANA-3 4480339 YP_871746.1 CDS Shewana3_4123 NC_008577.1 4955202 4956104 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 4955202..4956104 Shewanella sp. ANA-3 4480340 YP_871747.1 CDS Shewana3_4124 NC_008577.1 4956272 4956475 D KEGG: son:SO4740 hypothetical protein; hypothetical protein 4956272..4956475 Shewanella sp. ANA-3 4480341 YP_871748.1 CDS Shewana3_4125 NC_008577.1 4956555 4958384 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(4956555..4958384) Shewanella sp. ANA-3 4480342 YP_871749.1 CDS Shewana3_4126 NC_008577.1 4958460 4959230 R PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: son:SO4742 transcriptional regulator, DeoR family; DeoR family transcriptional regulator complement(4958460..4959230) Shewanella sp. ANA-3 4480343 YP_871750.1 CDS Shewana3_4127 NC_008577.1 4959434 4961542 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: son:SO4743 TonB-dependent receptor, putative; TonB-dependent siderophore receptor complement(4959434..4961542) Shewanella sp. ANA-3 4480344 YP_871751.1 CDS Shewana3_4128 NC_008577.1 4961802 4963166 R TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: son:SO4745 glucosamine-1-phosphate N-acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase; glucosamine-1-phosphate N-acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase complement(4961802..4963166) Shewanella sp. ANA-3 4480345 YP_871752.1 CDS atpC NC_008577.1 4963336 4963764 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(4963336..4963764) Shewanella sp. ANA-3 4480346 YP_871753.1 CDS Shewana3_4130 NC_008577.1 4963801 4965192 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(4963801..4965192) Shewanella sp. ANA-3 4480347 YP_871754.1 CDS Shewana3_4131 NC_008577.1 4965228 4966088 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(4965228..4966088) Shewanella sp. ANA-3 4480348 YP_871755.1 CDS Shewana3_4132 NC_008577.1 4966139 4967680 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(4966139..4967680) Shewanella sp. ANA-3 4480349 YP_871756.1 CDS Shewana3_4133 NC_008577.1 4967695 4968228 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(4967695..4968228) Shewanella sp. ANA-3 4480350 YP_871757.1 CDS Shewana3_4134 NC_008577.1 4968245 4968715 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(4968245..4968715) Shewanella sp. ANA-3 4480351 YP_871758.1 CDS Shewana3_4135 NC_008577.1 4968754 4969005 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(4968754..4969005) Shewanella sp. ANA-3 4480352 YP_871759.1 CDS Shewana3_4136 NC_008577.1 4969076 4969870 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(4969076..4969870) Shewanella sp. ANA-3 4480353 YP_871760.1 CDS Shewana3_4137 NC_008577.1 4969883 4970266 R PFAM: ATP synthase I chain; KEGG: son:SO4754 ATP synthase protein I; ATP synthase I chain complement(4969883..4970266) Shewanella sp. ANA-3 4480354 YP_871761.1 CDS Shewana3_4138 NC_008577.1 4970492 4971370 R TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: son:SO4755 ParB family protein; chromosome segregation DNA-binding protein complement(4970492..4971370) Shewanella sp. ANA-3 4480355 YP_871762.1 CDS Shewana3_4139 NC_008577.1 4971380 4972168 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO4756 ParA family protein; chromosome segregation ATPase complement(4971380..4972168) Shewanella sp. ANA-3 4480356 Shewana3_R0004 tRNA Shewana3_R0004 NC_008577.1 55972 56048 D tRNA-Asp 55972..56048 Shewanella sp. ANA-3 4478921 Shewana3_R0005 tRNA Shewana3_R0005 NC_008577.1 124437 124527 R tRNA-Sec complement(124437..124527) Shewanella sp. ANA-3 4477256 Shewana3_R0008 tRNA Shewana3_R0008 NC_008577.1 217493 217569 D tRNA-Ile 217493..217569 Shewanella sp. ANA-3 4477946 Shewana3_R0009 tRNA Shewana3_R0009 NC_008577.1 217615 217690 D tRNA-Ala 217615..217690 Shewanella sp. ANA-3 4477947 Shewana3_R0012 tRNA Shewana3_R0012 NC_008577.1 224512 224587 D tRNA-Thr 224512..224587 Shewanella sp. ANA-3 4477953 Shewana3_R0013 tRNA Shewana3_R0013 NC_008577.1 224595 224679 D tRNA-Tyr 224595..224679 Shewanella sp. ANA-3 4477954 Shewana3_R0014 tRNA Shewana3_R0014 NC_008577.1 224715 224788 D tRNA-Gly 224715..224788 Shewanella sp. ANA-3 4477955 Shewana3_R0015 tRNA Shewana3_R0015 NC_008577.1 224798 224873 D tRNA-Thr 224798..224873 Shewanella sp. ANA-3 4477956 Shewana3_R0019 tRNA Shewana3_R0019 NC_008577.1 272391 272467 D tRNA-Asp 272391..272467 Shewanella sp. ANA-3 4476486 Shewana3_R0020 tRNA Shewana3_R0020 NC_008577.1 416452 416528 D tRNA-Arg 416452..416528 Shewanella sp. ANA-3 4478954 Shewana3_R0021 tRNA Shewana3_R0021 NC_008577.1 416582 416657 D tRNA-His 416582..416657 Shewanella sp. ANA-3 4478955 Shewana3_R0022 tRNA Shewana3_R0022 NC_008577.1 416672 416748 D tRNA-Pro 416672..416748 Shewanella sp. ANA-3 4478956 Shewana3_R0023 tRNA Shewana3_R0023 NC_008577.1 416802 416878 D tRNA-Pro 416802..416878 Shewanella sp. ANA-3 4478957 Shewana3_R0024 tRNA Shewana3_R0024 NC_008577.1 692697 692772 D tRNA-Gly 692697..692772 Shewanella sp. ANA-3 4476622 Shewana3_R0025 tRNA Shewana3_R0025 NC_008577.1 692806 692881 D tRNA-Gly 692806..692881 Shewanella sp. ANA-3 4476623 Shewana3_R0026 tRNA Shewana3_R0026 NC_008577.1 693005 693080 D tRNA-Gly 693005..693080 Shewanella sp. ANA-3 4476624 Shewana3_R0027 tRNA Shewana3_R0027 NC_008577.1 693125 693200 D tRNA-Gly 693125..693200 Shewanella sp. ANA-3 4476625 Shewana3_R0028 tRNA Shewana3_R0028 NC_008577.1 859877 859963 D tRNA-Leu 859877..859963 Shewanella sp. ANA-3 4476950 Shewana3_R0030 tRNA Shewana3_R0030 NC_008577.1 1153202 1153278 D tRNA-Trp 1153202..1153278 Shewanella sp. ANA-3 4477509 Shewana3_R0031 tRNA Shewana3_R0031 NC_008577.1 1184176 1184252 D tRNA-Met 1184176..1184252 Shewanella sp. ANA-3 4477541 Shewana3_R0032 tRNA Shewana3_R0032 NC_008577.1 1184307 1184391 D tRNA-Leu 1184307..1184391 Shewanella sp. ANA-3 4477542 Shewana3_R0033 tRNA Shewana3_R0033 NC_008577.1 1184439 1184513 D tRNA-Gln 1184439..1184513 Shewanella sp. ANA-3 4477543 Shewana3_R0034 tRNA Shewana3_R0034 NC_008577.1 1184536 1184610 D tRNA-Gln 1184536..1184610 Shewanella sp. ANA-3 4479352 Shewana3_R0035 tRNA Shewana3_R0035 NC_008577.1 1184612 1184688 D tRNA-Met 1184612..1184688 Shewanella sp. ANA-3 4479353 Shewana3_R0036 tRNA Shewana3_R0036 NC_008577.1 1184772 1184856 D tRNA-Leu 1184772..1184856 Shewanella sp. ANA-3 4479354 Shewana3_R0037 tRNA Shewana3_R0037 NC_008577.1 1184893 1184967 D tRNA-Gln 1184893..1184967 Shewanella sp. ANA-3 4479355 Shewana3_R0038 tRNA Shewana3_R0038 NC_008577.1 1199787 1199873 D tRNA-Leu 1199787..1199873 Shewanella sp. ANA-3 4479371 Shewana3_R0039 tRNA Shewana3_R0039 NC_008577.1 1199957 1200033 D tRNA-Met 1199957..1200033 Shewanella sp. ANA-3 4479372 Shewana3_R0041 tRNA Shewana3_R0041 NC_008577.1 1332641 1332732 D tRNA-Ser 1332641..1332732 Shewanella sp. ANA-3 4477836 Shewana3_R0042 tRNA Shewana3_R0042 NC_008577.1 1332751 1332827 D tRNA-Arg 1332751..1332827 Shewanella sp. ANA-3 4477837 Shewana3_R0043 tRNA Shewana3_R0043 NC_008577.1 1332856 1332932 D tRNA-Arg 1332856..1332932 Shewanella sp. ANA-3 4477838 Shewana3_R0044 tRNA Shewana3_R0044 NC_008577.1 1333015 1333091 D tRNA-Arg 1333015..1333091 Shewanella sp. ANA-3 4477839 Shewana3_R0045 tRNA Shewana3_R0045 NC_008577.1 1333135 1333211 D tRNA-Arg 1333135..1333211 Shewanella sp. ANA-3 4477840 Shewana3_R0046 tRNA Shewana3_R0046 NC_008577.1 1333256 1333332 D tRNA-Arg 1333256..1333332 Shewanella sp. ANA-3 4477841 Shewana3_R0047 tRNA Shewana3_R0047 NC_008577.1 1333369 1333460 D tRNA-Ser 1333369..1333460 Shewanella sp. ANA-3 4477842 Shewana3_R0048 tRNA Shewana3_R0048 NC_008577.1 1333555 1333631 D tRNA-Arg 1333555..1333631 Shewanella sp. ANA-3 4477843 Shewana3_R0049 tRNA Shewana3_R0049 NC_008577.1 1385855 1385930 R tRNA-Thr complement(1385855..1385930) Shewanella sp. ANA-3 4478691 Shewana3_R0050 tRNA Shewana3_R0050 NC_008577.1 1385937 1386012 R tRNA-Phe complement(1385937..1386012) Shewanella sp. ANA-3 4478692 Shewana3_R0051 tRNA Shewana3_R0051 NC_008577.1 1386491 1386566 R tRNA-Thr complement(1386491..1386566) Shewanella sp. ANA-3 4478693 Shewana3_R0052 tRNA Shewana3_R0052 NC_008577.1 1386573 1386648 R tRNA-Phe complement(1386573..1386648) Shewanella sp. ANA-3 4478694 Shewana3_R0053 tRNA Shewana3_R0053 NC_008577.1 1528014 1528089 R tRNA-Arg complement(1528014..1528089) Shewanella sp. ANA-3 4478826 Shewana3_R0054 tRNA Shewana3_R0054 NC_008577.1 1642623 1642698 R tRNA-Val complement(1642623..1642698) Shewanella sp. ANA-3 4479015 Shewana3_R0055 tRNA Shewana3_R0055 NC_008577.1 1642724 1642799 R tRNA-Val complement(1642724..1642799) Shewanella sp. ANA-3 4479016 Shewana3_R0056 tRNA Shewana3_R0056 NC_008577.1 1642825 1642900 R tRNA-Val complement(1642825..1642900) Shewanella sp. ANA-3 4479017 Shewana3_R0057 tRNA Shewana3_R0057 NC_008577.1 1642942 1643017 R tRNA-Val complement(1642942..1643017) Shewanella sp. ANA-3 4479018 Shewana3_R0058 tRNA Shewana3_R0058 NC_008577.1 1643050 1643125 R tRNA-Val complement(1643050..1643125) Shewanella sp. ANA-3 4479019 Shewana3_R0059 tRNA Shewana3_R0059 NC_008577.1 1643174 1643249 R tRNA-Val complement(1643174..1643249) Shewanella sp. ANA-3 4479020 Shewana3_R0060 tRNA Shewana3_R0060 NC_008577.1 1645352 1645427 D tRNA-Ala 1645352..1645427 Shewanella sp. ANA-3 4479022 Shewana3_R0061 tRNA Shewana3_R0061 NC_008577.1 1645495 1645570 D tRNA-Glu 1645495..1645570 Shewanella sp. ANA-3 4479023 Shewana3_R0062 tRNA Shewana3_R0062 NC_008577.1 1645678 1645753 D tRNA-Ala 1645678..1645753 Shewanella sp. ANA-3 4479024 Shewana3_R0063 tRNA Shewana3_R0063 NC_008577.1 1645818 1645893 D tRNA-Glu 1645818..1645893 Shewanella sp. ANA-3 4479025 Shewana3_R0064 tRNA Shewana3_R0064 NC_008577.1 1646074 1646149 D tRNA-Glu 1646074..1646149 Shewanella sp. ANA-3 4479026 Shewana3_R0065 tRNA Shewana3_R0065 NC_008577.1 1646249 1646324 D tRNA-Glu 1646249..1646324 Shewanella sp. ANA-3 4479027 Shewana3_R0066 tRNA Shewana3_R0066 NC_008577.1 1646424 1646499 D tRNA-Glu 1646424..1646499 Shewanella sp. ANA-3 4479028 Shewana3_R0067 tRNA Shewana3_R0067 NC_008577.1 1646599 1646674 D tRNA-Glu 1646599..1646674 Shewanella sp. ANA-3 4479029 Shewana3_R0068 tRNA Shewana3_R0068 NC_008577.1 1646773 1646848 D tRNA-Glu 1646773..1646848 Shewanella sp. ANA-3 4479030 Shewana3_R0070 tRNA Shewana3_R0070 NC_008577.1 1854977 1855053 D tRNA-Ile 1854977..1855053 Shewanella sp. ANA-3 4478809 Shewana3_R0071 tRNA Shewana3_R0071 NC_008577.1 1855099 1855174 D tRNA-Ala 1855099..1855174 Shewanella sp. ANA-3 4478810 Shewana3_R0074 tRNA Shewana3_R0074 NC_008577.1 1878016 1878092 R tRNA-Met complement(1878016..1878092) Shewanella sp. ANA-3 4476556 Shewana3_R0075 tRNA Shewana3_R0075 NC_008577.1 1878126 1878202 R tRNA-Met complement(1878126..1878202) Shewanella sp. ANA-3 4476557 Shewana3_R0076 tRNA Shewana3_R0076 NC_008577.1 1878265 1878341 R tRNA-Met complement(1878265..1878341) Shewanella sp. ANA-3 4476558 Shewana3_R0077 tRNA Shewana3_R0077 NC_008577.1 1887764 1887854 D tRNA-Ser 1887764..1887854 Shewanella sp. ANA-3 4476566 Shewana3_R0078 tRNA Shewana3_R0078 NC_008577.1 1888524 1888614 D tRNA-Ser 1888524..1888614 Shewanella sp. ANA-3 4476567 Shewana3_R0079 tRNA Shewana3_R0079 NC_008577.1 1892517 1892592 D tRNA-Gly 1892517..1892592 Shewanella sp. ANA-3 4476571 Shewana3_R0080 tRNA Shewana3_R0080 NC_008577.1 1892613 1892686 D tRNA-Cys 1892613..1892686 Shewanella sp. ANA-3 4476572 Shewana3_R0081 tRNA Shewana3_R0081 NC_008577.1 1892735 1892821 D tRNA-Leu 1892735..1892821 Shewanella sp. ANA-3 4476573 Shewana3_R0082 tRNA Shewana3_R0082 NC_008577.1 1892953 1893039 D tRNA-Leu 1892953..1893039 Shewanella sp. ANA-3 4476574 Shewana3_R0083 tRNA Shewana3_R0083 NC_008577.1 2118528 2118615 D tRNA-Ser 2118528..2118615 Shewanella sp. ANA-3 4477479 Shewana3_R0085 tRNA Shewana3_R0085 NC_008577.1 2409470 2409546 R tRNA-Val complement(2409470..2409546) Shewanella sp. ANA-3 4476382 Shewana3_R0086 tRNA Shewana3_R0086 NC_008577.1 2447726 2447802 R tRNA-Val complement(2447726..2447802) Shewanella sp. ANA-3 4476404 Shewana3_R0087 tRNA Shewana3_R0087 NC_008577.1 2447841 2447917 R tRNA-Val complement(2447841..2447917) Shewanella sp. ANA-3 4476283 Shewana3_R0088 tRNA Shewana3_R0088 NC_008577.1 2469304 2469394 D tRNA-Ser 2469304..2469394 Shewanella sp. ANA-3 4476308 Shewana3_R0089 tRNA Shewana3_R0089 NC_008577.1 2546056 2546142 R tRNA-Leu complement(2546056..2546142) Shewanella sp. ANA-3 4479530 Shewana3_R0090 tRNA Shewana3_R0090 NC_008577.1 2546192 2546265 R tRNA-Cys complement(2546192..2546265) Shewanella sp. ANA-3 4479531 Shewana3_R0091 tRNA Shewana3_R0091 NC_008577.1 2546289 2546364 R tRNA-Gly complement(2546289..2546364) Shewanella sp. ANA-3 4478673 Shewana3_R0092 tRNA Shewana3_R0092 NC_008577.1 2591510 2591594 D tRNA-Tyr 2591510..2591594 Shewanella sp. ANA-3 4478359 Shewana3_R0093 tRNA Shewana3_R0093 NC_008577.1 2591634 2591718 D tRNA-Tyr 2591634..2591718 Shewanella sp. ANA-3 4478360 Shewana3_R0094 tRNA Shewana3_R0094 NC_008577.1 2591849 2591933 D tRNA-Tyr 2591849..2591933 Shewanella sp. ANA-3 4478361 Shewana3_R0095 tRNA Shewana3_R0095 NC_008577.1 2597882 2597957 D tRNA-Asn 2597882..2597957 Shewanella sp. ANA-3 4478366 Shewana3_R0096 tRNA Shewana3_R0096 NC_008577.1 2598005 2598080 D tRNA-Asn 2598005..2598080 Shewanella sp. ANA-3 4478367 Shewana3_R0097 tRNA Shewana3_R0097 NC_008577.1 2598112 2598187 D tRNA-Asn 2598112..2598187 Shewanella sp. ANA-3 4478368 Shewana3_R0098 tRNA Shewana3_R0098 NC_008577.1 2598234 2598309 D tRNA-Asn 2598234..2598309 Shewanella sp. ANA-3 4478369 Shewana3_R0099 tRNA Shewana3_R0099 NC_008577.1 2598356 2598431 D tRNA-Asn 2598356..2598431 Shewanella sp. ANA-3 4478370 Shewana3_R0100 tRNA Shewana3_R0100 NC_008577.1 2842093 2842169 R tRNA-Asp complement(2842093..2842169) Shewanella sp. ANA-3 4479597 Shewana3_R0101 tRNA Shewana3_R0101 NC_008577.1 2842226 2842302 R tRNA-Asp complement(2842226..2842302) Shewanella sp. ANA-3 4479598 Shewana3_R0102 tRNA Shewana3_R0102 NC_008577.1 2919047 2919123 R tRNA-Pro complement(2919047..2919123) Shewanella sp. ANA-3 4477243 Shewana3_R0104 tRNA Shewana3_R0104 NC_008577.1 3025020 3025095 R tRNA-Lys complement(3025020..3025095) Shewanella sp. ANA-3 4477578 Shewana3_R0105 tRNA Shewana3_R0105 NC_008577.1 3025256 3025331 R tRNA-Lys complement(3025256..3025331) Shewanella sp. ANA-3 4477579 Shewana3_R0106 tRNA Shewana3_R0106 NC_008577.1 3025492 3025567 R tRNA-Lys complement(3025492..3025567) Shewanella sp. ANA-3 4477580 Shewana3_R0107 tRNA Shewana3_R0107 NC_008577.1 3025603 3025678 R tRNA-Lys complement(3025603..3025678) Shewanella sp. ANA-3 4477581 Shewana3_R0108 tRNA Shewana3_R0108 NC_008577.1 3025715 3025790 R tRNA-Lys complement(3025715..3025790) Shewanella sp. ANA-3 4477582 Shewana3_R0109 tRNA Shewana3_R0109 NC_008577.1 3025826 3025901 R tRNA-Lys complement(3025826..3025901) Shewanella sp. ANA-3 4477583 Shewana3_R0110 tRNA Shewana3_R0110 NC_008577.1 3025956 3026031 R tRNA-Lys complement(3025956..3026031) Shewanella sp. ANA-3 4477584 Shewana3_R0112 tRNA Shewana3_R0112 NC_008577.1 3179110 3179185 R tRNA-His complement(3179110..3179185) Shewanella sp. ANA-3 4478427 Shewana3_R0113 tRNA Shewana3_R0113 NC_008577.1 3179195 3179271 R tRNA-Arg complement(3179195..3179271) Shewanella sp. ANA-3 4478428 Shewana3_R0114 tRNA Shewana3_R0114 NC_008577.1 3179381 3179457 R tRNA-Pro complement(3179381..3179457) Shewanella sp. ANA-3 4478429 Shewana3_R0117 tRNA Shewana3_R0117 NC_008577.1 3701709 3701785 D tRNA-Met 3701709..3701785 Shewanella sp. ANA-3 4477803 Shewana3_R0121 tRNA Shewana3_R0121 NC_008577.1 3812755 3812830 D tRNA-Phe 3812755..3812830 Shewanella sp. ANA-3 4477770 Shewana3_R0122 tRNA Shewana3_R0122 NC_008577.1 3812886 3812972 D tRNA-Leu 3812886..3812972 Shewanella sp. ANA-3 4477771 Shewana3_R0123 tRNA Shewana3_R0123 NC_008577.1 3813017 3813103 D tRNA-Leu 3813017..3813103 Shewanella sp. ANA-3 4477772 Shewana3_R0131 tRNA Shewana3_R0131 NC_008577.1 4483311 4483386 R tRNA-Thr complement(4483311..4483386) Shewanella sp. ANA-3 4479939 Shewana3_R0134 tRNA Shewana3_R0134 NC_008577.1 4486830 4486905 R tRNA-Ala complement(4486830..4486905) Shewanella sp. ANA-3 4479942 Shewana3_R0135 tRNA Shewana3_R0135 NC_008577.1 4486951 4487027 R tRNA-Ile complement(4486951..4487027) Shewanella sp. ANA-3 4479943 Shewana3_R0001 rRNA Shewana3_R0001 NC_008577.1 50953 52507 D 16S ribosomal RNA 50953..52507 Shewanella sp. ANA-3 4478918 Shewana3_R0002 rRNA Shewana3_R0002 NC_008577.1 52804 55698 D 23S ribosomal RNA 52804..55698 Shewanella sp. ANA-3 4478919 Shewana3_R0003 rRNA Shewana3_R0003 NC_008577.1 55825 55944 D 5S ribosomal RNA 55825..55944 Shewanella sp. ANA-3 4478920 Shewana3_R0007 rRNA Shewana3_R0007 NC_008577.1 215881 217435 D 16S ribosomal RNA 215881..217435 Shewanella sp. ANA-3 4477945 Shewana3_R0010 rRNA Shewana3_R0010 NC_008577.1 217962 220856 D 23S ribosomal RNA 217962..220856 Shewanella sp. ANA-3 4477948 Shewana3_R0011 rRNA Shewana3_R0011 NC_008577.1 221031 221150 D 5S ribosomal RNA 221031..221150 Shewanella sp. ANA-3 4477949 Shewana3_R0016 rRNA Shewana3_R0016 NC_008577.1 267313 268867 D 16S ribosomal RNA 267313..268867 Shewanella sp. ANA-3 4476483 Shewana3_R0017 rRNA Shewana3_R0017 NC_008577.1 269160 272054 D 23S ribosomal RNA 269160..272054 Shewanella sp. ANA-3 4476484 Shewana3_R0018 rRNA Shewana3_R0018 NC_008577.1 272229 272348 D 5S ribosomal RNA 272229..272348 Shewanella sp. ANA-3 4476485 Shewana3_R0069 rRNA Shewana3_R0069 NC_008577.1 1853365 1854919 D 16S ribosomal RNA 1853365..1854919 Shewanella sp. ANA-3 4478808 Shewana3_R0072 rRNA Shewana3_R0072 NC_008577.1 1855447 1858341 D 23S ribosomal RNA 1855447..1858341 Shewanella sp. ANA-3 4478811 Shewana3_R0073 rRNA Shewana3_R0073 NC_008577.1 1858517 1858636 D 5S ribosomal RNA 1858517..1858636 Shewanella sp. ANA-3 4478812 Shewana3_R0118 rRNA Shewana3_R0118 NC_008577.1 3799898 3800017 R 5S ribosomal RNA complement(3799898..3800017) Shewanella sp. ANA-3 4477761 Shewana3_R0119 rRNA Shewana3_R0119 NC_008577.1 3800194 3803088 R 23S ribosomal RNA complement(3800194..3803088) Shewanella sp. ANA-3 4477762 Shewana3_R0120 rRNA Shewana3_R0120 NC_008577.1 3803385 3804939 R 16S ribosomal RNA complement(3803385..3804939) Shewanella sp. ANA-3 4477763 Shewana3_R0128 rRNA Shewana3_R0128 NC_008577.1 4477165 4477284 R 5S ribosomal RNA complement(4477165..4477284) Shewanella sp. ANA-3 4479936 Shewana3_R0129 rRNA Shewana3_R0129 NC_008577.1 4477410 4480304 R 23S ribosomal RNA complement(4477410..4480304) Shewanella sp. ANA-3 4479937 Shewana3_R0130 rRNA Shewana3_R0130 NC_008577.1 4480602 4482156 R 16S ribosomal RNA complement(4480602..4482156) Shewanella sp. ANA-3 4479938 Shewana3_R0130a rRNA Shewana3_R0130a NC_008577.1 4483159 4483278 R 5S ribosomal RNA complement(4483159..4483278) Shewanella sp. ANA-3 5309639 Shewana3_R0132 rRNA Shewana3_R0132 NC_008577.1 4483419 4483538 R 5S ribosomal RNA complement(4483419..4483538) Shewanella sp. ANA-3 4479940 Shewana3_R0133 rRNA Shewana3_R0133 NC_008577.1 4483664 4486558 R 23S ribosomal RNA complement(4483664..4486558) Shewanella sp. ANA-3 4479941 Shewana3_R0136 rRNA Shewana3_R0136 NC_008577.1 4487087 4488641 R 16S ribosomal RNA complement(4487087..4488641) Shewanella sp. ANA-3 4479944 Shewana3_R0138 rRNA Shewana3_R0138 NC_008577.1 4692060 4692179 R 5S ribosomal RNA complement(4692060..4692179) Shewanella sp. ANA-3 4480120 Shewana3_R0139 rRNA Shewana3_R0139 NC_008577.1 4692306 4695200 R 23S ribosomal RNA complement(4692306..4695200) Shewanella sp. ANA-3 4480121 Shewana3_R0140 rRNA Shewana3_R0140 NC_008577.1 4695498 4697052 R 16S ribosomal RNA complement(4695498..4697052) Shewanella sp. ANA-3 4480122 Shewana3_R0141 rRNA Shewana3_R0141 NC_008577.1 4947657 4947776 R 5S ribosomal RNA complement(4947657..4947776) Shewanella sp. ANA-3 4480335 Shewana3_R0142 rRNA Shewana3_R0142 NC_008577.1 4947950 4950845 R 23S ribosomal RNA complement(4947950..4950845) Shewanella sp. ANA-3 4480336 Shewana3_R0143 rRNA Shewana3_R0143 NC_008577.1 4951143 4952697 R 16S ribosomal RNA complement(4951143..4952697) Shewanella sp. ANA-3 4480337