-- dump date 20120504_161944 -- class Genbank::CDS -- table cds_note -- id note YP_004315264.1 SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; TIGRFAM: Chromosomal replication control, initiator DnaA; KEGG: phe:Phep_3606 chromosomal replication initiator protein DnaA; HAMAP: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal YP_004315265.1 PFAM: heat shock protein Hsp20; KEGG: phe:Phep_2899 heat shock protein HSP20 YP_004315266.1 PFAM: thioesterase; KEGG: phe:Phep_2327 thioesterase superfamily protein YP_004315267.1 KEGG: phe:Phep_3609 iron-sulfur cluster assembly accessory protein; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis YP_004315268.1 KEGG: phe:Phep_3811 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004315269.1 SMART: ribosomal RNA adenine methylase transferase, N-terminal; TIGRFAM: ribosomal RNA adenine dimethylase; KEGG: phe:Phep_3812 dimethyladenosine transferase; HAMAP: ribosomal RNA adenine dimethylase; PFAM: ribosomal RNA adenine methylase transferase YP_004315270.1 PFAM: pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; TIGRFAM: pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; HAMAP: pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: phe:Phep_3813 4-hydroxythreonine-4-phosphate dehydrogenase YP_004315271.1 PFAM: protein of unknown function DUF177; KEGG: phe:Phep_3814 protein of unknown function DUF177 YP_004315272.1 TIGRFAM: ribosomal protein L32p; HAMAP: ribosomal protein L32p; KEGG: phe:Phep_3815 ribosomal protein L32; PFAM: ribosomal protein L32p YP_004315273.1 TIGRFAM: phospholipid biosynthesis protein, PlsX-like; HAMAP: phospholipid biosynthesis protein, PlsX-like; KEGG: phe:Phep_3816 fatty acid/phospholipid synthesis protein PlsX; PFAM: Fatty acid synthesis PlsX protein YP_004315274.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: beta-ketoacyl-acyl carrier protein synthase III (FabH); HAMAP: beta-ketoacyl-acyl carrier protein synthase III (FabH); KEGG: phe:Phep_3817 3-oxoacyl-(acyl-carrier-protein) synthase III YP_004315275.1 KEGG: phe:Phep_3818 acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: acetyl-CoA biotin carboxyl carrier; PFAM: Biotin/lipoyl attachment YP_004315276.1 SMART: Biotin carboxylase, C-terminal; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; KEGG: phe:Phep_3819 acetyl-CoA carboxylase, biotin carboxylase; PFAM: carbamoyl-phosphate synthetase, large subunit, ATP-binding; carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal YP_004315277.1 KEGG: phe:Phep_3820 sec-independent protein translocase, TatC subunit; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent periplasmic protein translocase YP_004315278.1 TIGRFAM: ribose/galactose isomerase; ribose 5-phosphate isomerase B; KEGG: phe:Phep_3821 sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: ribose/galactose isomerase YP_004315279.1 PFAM: peptidase M28; KEGG: phe:Phep_3822 peptidase M28 YP_004315280.1 PFAM: Domain of unknown function DUF162; KEGG: phe:Phep_3823 protein of unknown function DUF162 YP_004315281.1 KEGG: gvi:glr1760 hypothetical protein YP_004315282.1 KEGG: phe:Phep_3722 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA oxidase/dehydrogenase, type 1; acyl-CoA dehydrogenase, N-terminal; acyl-CoA oxidase/dehydrogenase, central domain YP_004315283.1 TIGRFAM: thiolase; KEGG: phe:Phep_3723 acetyl-CoA acetyltransferase; PFAM: thiolase, C-terminal; thiolase, N-terminal YP_004315284.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; KEGG: phe:Phep_3724 3-hydroxyacyl-CoA dehydrogenase NAD-binding YP_004315285.1 KEGG: phe:Phep_3725 regulatory protein MarR; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004315287.1 SMART: transcription factor jumonji/aspartyl beta-hydroxylase; KEGG: cpi:Cpin_0347 transcription factor jumonji JmjC domain protein YP_004315288.1 KEGG: phe:Phep_3732 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004315289.1 KEGG: phe:Phep_3733 hypothetical protein YP_004315290.1 KEGG: phe:Phep_3734 peptidase M61 domain protein; PFAM: peptidase M61; SMART: PDZ/DHR/GLGF YP_004315291.1 KEGG: fjo:Fjoh_2939 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004315292.1 PFAM: Acriflavin resistance protein; KEGG: chu:CHU_2658 multidrug efflux membrane fusion protein YP_004315293.1 PFAM: Outer membrane efflux protein; KEGG: phe:Phep_3737 outer membrane efflux protein YP_004315294.1 KEGG: phe:Phep_3738 N-acetylglucosamine kinase YP_004315295.1 KEGG: phe:Phep_2187 glutathione peroxidase; PFAM: glutathione peroxidase YP_004315296.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165; KEGG: lby:Lbys_0994 transposase IS204/is1001/IS1096/is1165 family protein YP_004315297.1 KEGG: lby:Lbys_0995 hypothetical protein YP_004315298.1 KEGG: fbc:FB2170_13523 hypothetical protein YP_004315299.1 PFAM: protein of unknown function DUF72; KEGG: chu:CHU_1402 hypothetical protein YP_004315300.1 PFAM: peptidase M28; KEGG: dfe:Dfer_2670 peptidase M28 YP_004315301.1 TIGRFAM: recombination protein O, RecO; HAMAP: recombination protein O, RecO; KEGG: phe:Phep_0459 DNA repair protein RecO; PFAM: recombination protein O, RecO YP_004315302.1 PFAM: diacylglycerol kinase, prokaryotic; KEGG: efa:EF2411 diacylglycerol kinase YP_004315303.1 KEGG: amt:Amet_4339 undecaprenol kinase YP_004315304.1 TIGRFAM: isoleucyl-tRNA synthetase, class Ia; HAMAP: isoleucyl-tRNA synthetase, class Ia; KEGG: dfe:Dfer_4664 isoleucyl-tRNA synthetase YP_004315305.1 KEGG: phe:Phep_0419 DnaK suppressor protein YP_004315306.1 KEGG: phe:Phep_0418 peptidase A8 signal peptidase II; HAMAP: peptidase A8, signal peptidase II; PFAM: peptidase A8, signal peptidase II YP_004315307.1 PFAM: protein of unknown function DUF541; KEGG: phe:Phep_0417 protein of unknown function DUF541 YP_004315309.1 TIGRFAM: Aconitase/iron regulatory protein 2; KEGG: gfo:GFO_1390 aconitase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004315310.1 KEGG: maq:Maqu_3066 bile acid:sodium symporter YP_004315311.1 KEGG: phe:Phep_3318 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; Zinc-finger, NAD-dependent DNA ligase C4-type; BRCT; TIGRFAM: NAD-dependent DNA ligase; HAMAP: NAD-dependent DNA ligase; SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT YP_004315312.1 TIGRFAM: dihydrodipicolinate synthase subfamily; HAMAP: dihydrodipicolinate synthase; KEGG: phe:Phep_3319 dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_004315313.1 KEGG: phe:Phep_3321 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/classII YP_004315315.1 TIGRFAM: cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; KEGG: phe:Phep_3322 cell division protein FtsZ; SMART: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain YP_004315316.1 TIGRFAM: cell division protein family FtsA; PFAM: cell division protein FtsA domain; KEGG: phe:Phep_3323 cell division protein FtsA; SMART: cell division protein FtsA domain YP_004315317.1 KEGG: phe:Phep_3324 hypothetical protein YP_004315318.1 PFAM: Mur ligase, C-terminal; Mur ligase, central; Mur ligase, N-terminal; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; KEGG: phe:Phep_3325 UDP-N-acetylmuramate--L-alanine ligase YP_004315319.1 TIGRFAM: N-acetylglucosaminyltransferase, MurG; HAMAP: N-acetylglucosaminyltransferase, MurG; KEGG: phe:Phep_3326 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase, family 28, C-terminal; glycosyl transferase, family 28 YP_004315320.1 PFAM: cell cycle protein; KEGG: phe:Phep_3327 cell cycle protein YP_004315321.1 PFAM: Mur ligase, central; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; KEGG: phe:Phep_3328 UDP-N-acetylmuramoylalanine/D-glutamate ligase YP_004315322.1 TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide transferase; HAMAP: phospho-N-acetylmuramoyl-pentapeptide transferase; KEGG: phe:Phep_3329 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase, family 4; phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_004315323.1 PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; HAMAP: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: phe:Phep_3330 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_004315324.1 PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA; KEGG: phe:Phep_3331 peptidoglycan glycosyltransferase; SMART: PASTA YP_004315325.1 KEGG: phe:Phep_3332 hypothetical protein YP_004315326.1 TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; KEGG: phe:Phep_3333 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW YP_004315327.1 TIGRFAM: MraZ; HAMAP: MraZ; KEGG: phe:Phep_3334 MraZ protein; PFAM: MraZ domain YP_004315328.1 PFAM: transport-associated; KEGG: fjo:Fjoh_4528 transporter YP_004315329.1 HAMAP: phosphoglycerate kinase; KEGG: phe:Phep_3335 phosphoglycerate kinase; PFAM: phosphoglycerate kinase YP_004315330.1 SMART: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: phe:Phep_3337 glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004315331.1 KEGG: phe:Phep_1223 hypothetical protein YP_004315332.1 PFAM: alpha/beta hydrolase fold-1; KEGG: chu:CHU_2307 alpha/beta fold family hydrolase YP_004315334.1 KEGG: mrb:Mrub_1208 hypothetical protein YP_004315335.1 KEGG: lby:Lbys_0783 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004315336.1 KEGG: lby:Lbys_0784 short-chain dehydrogenase/reductase sdr; PFAM: Short-chain dehydrogenase/reductase SDR YP_004315337.1 TIGRFAM: adenylate kinase, subfamily; HAMAP: adenylate kinase; KEGG: dfe:Dfer_4092 adenylate kinase; PFAM: adenylate kinase YP_004315338.1 TIGRFAM: GTP-binding protein Obg/CgtA; Small GTP-binding protein; HAMAP: GTP-binding protein Obg/CgtA; KEGG: phe:Phep_3380 GTPase ObgE; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related YP_004315339.1 KEGG: fjo:Fjoh_3948 hypothetical protein YP_004315340.1 KEGG: fjo:Fjoh_3949 hypothetical protein YP_004315341.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gym:GYMC10_3798 glyoxalase/bleomycin resistance protein/dioxygenase YP_004315342.1 KEGG: cpi:Cpin_0702 PDZ/DHR/GLGF domain protein; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF YP_004315343.1 KEGG: lby:Lbys_1511 hypothetical protein YP_004315344.1 TIGRFAM: Na+/H+ antiporter NhaA; HAMAP: Na+/H+ antiporter NhaA; KEGG: dfe:Dfer_3089 Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA YP_004315345.1 KEGG: fjo:Fjoh_3622 hypothetical protein YP_004315346.1 KEGG: bfr:BF3623 hypothetical protein YP_004315347.1 KEGG: mar:MAE_49360 hypothetical protein YP_004315348.1 KEGG: zpr:ZPR_0526 hypothetical protein YP_004315349.1 PFAM: Alkyl hydroperoxide reductase subunit C/ thiol specific antioxidant; KEGG: lby:Lbys_2440 redoxin domain protein YP_004315350.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: lby:Lbys_1986 TonB-dependent receptor plug YP_004315351.1 KEGG: lby:Lbys_2442 tetratricopeptide domain protein YP_004315352.1 KEGG: pbr:PB2503_06607 glutamine cyclotransferase YP_004315353.1 KEGG: lby:Lbys_1989 hypothetical protein YP_004315354.1 KEGG: cpi:Cpin_6157 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004315355.1 PFAM: FecR protein; KEGG: phe:Phep_1501 FecR protein YP_004315356.1 KEGG: sli:Slin_7043 hypothetical protein YP_004315357.1 KEGG: sli:Slin_7061 hypothetical protein YP_004315358.1 KEGG: zpr:ZPR_1276 DNA-binding protein YP_004315359.1 KEGG: tte:TTE1437 hypothetical protein YP_004315360.1 PFAM: Domain of unknown function DUF305; KEGG: zpr:ZPR_4238 membrane protein YP_004315361.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: cat:CA2559_11723 heavy-metal transporting P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase YP_004315363.1 KEGG: aas:Aasi_0342 hypothetical protein YP_004315364.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: pdi:BDI_1909 hypothetical protein YP_004315365.1 KEGG: phe:Phep_2992 hypothetical protein YP_004315366.1 PFAM: RagB/SusD; KEGG: bfs:BF3306 hypothetical protein YP_004315367.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: bfr:BF0883 hypothetical protein YP_004315368.1 KEGG: bth:BT_0453 N-acylglucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase YP_004315369.1 KEGG: bth:BT_3606 sugar-proton symporter; TIGRFAM: Sugar/inositol transporter; PFAM: general substrate transporter YP_004315370.1 KEGG: bth:BT_0435 hypothetical protein YP_004315371.1 KEGG: phe:Phep_2995 ROK family protein; PFAM: ROK YP_004315372.1 KEGG: lby:Lbys_0995 hypothetical protein YP_004315373.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165; KEGG: lby:Lbys_0994 transposase IS204/is1001/IS1096/is1165 family protein YP_004315374.1 KEGG: zpr:ZPR_3496 site-specific recombinase; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal YP_004315375.1 KEGG: zpr:ZPR_3495 hypothetical protein YP_004315377.1 KEGG: gfo:GFO_1583 hypothetical protein YP_004315379.1 PFAM: Cupin 2, conserved barrel; KEGG: sli:Slin_1948 cupin 2 conserved barrel domain protein YP_004315380.1 KEGG: ade:Adeh_3213 hypothetical protein YP_004315381.1 PFAM: carboxymuconolactone decarboxylase; KEGG: amu:Amuc_1002 carboxymuconolactone decarboxylase YP_004315382.1 KEGG: rbi:RB2501_01061 esterase; PFAM: carboxylesterase, type B YP_004315383.1 KEGG: lme:LEUM_1080 saccharopine dehydrogenase related protein YP_004315384.1 KEGG: rbi:RB2501_01036 flavodoxin YP_004315385.1 KEGG: dvm:DvMF_2944 hypothetical protein YP_004315386.1 KEGG: bxe:Bxe_B0797 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain YP_004315387.1 KEGG: gbm:Gbem_3980 aldo/keto reductase YvgN; PFAM: NADP-dependent oxidoreductase domain YP_004315388.1 KEGG: lby:Lbys_0296 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004315389.1 PFAM: Signal transduction histidine kinase, internal region; KEGG: bfr:BF4293 two-component system sensor protein histidine kinase YP_004315390.1 KEGG: pdi:BDI_2554 two-component response regulator; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain YP_004315391.1 KEGG: cpi:Cpin_3787 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004315392.1 KEGG: tmt:Tmath_1401 hypothetical protein YP_004315393.1 KEGG: rbi:RB2501_01046 hypothetical protein YP_004315394.1 KEGG: rbi:RB2501_01011 isoquinoline 1-oxidoreductase, subunit beta; PFAM: aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding YP_004315395.1 KEGG: sli:Slin_6243 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; ferredoxin YP_004315396.1 KEGG: fjo:Fjoh_4205 alanine dehydrogenase; PFAM: XdhC- CoxI YP_004315397.1 TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: radical SAM; Molybdenum cofactor synthesis C-terminal; KEGG: cpi:Cpin_4135 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB YP_004315398.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: dfe:Dfer_5341 TonB-dependent receptor YP_004315399.1 PFAM: protein of unknown function DUF81; KEGG: chu:CHU_0807 hypothetical protein YP_004315400.1 KEGG: gpb:HDN1F_09790 predicted oxidoreductase, molybdopterin binding YP_004315402.1 PFAM: Molybdopterin biosynthesis MoaE; KEGG: rbi:RB2501_05280 molybdopterinconverting factor, subunit YP_004315403.1 manually curated; KEGG: tmt:Tmath_1401 hypothetical protein YP_004315404.1 PFAM: Domain of unknown function DUF418; KEGG: pdi:BDI_3123 transmembrane protein YP_004315406.1 KEGG: fal:FRAAL2623 branched-chain amino acid ABC transporter ATP-binding protein YP_004315407.1 PFAM: FecR protein; KEGG: dfe:Dfer_1585 anti-FecI sigma factor, FecR YP_004315408.1 KEGG: cpi:Cpin_6157 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004315409.1 KEGG: bta:100297981 similar to early growth response 2 protein YP_004315410.1 PFAM: RagB/SusD; KEGG: phe:Phep_2855 RagB/SusD domain protein YP_004315411.1 PFAM: TonB-dependent receptor, plug; KEGG: phe:Phep_2854 TonB-dependent receptor plug YP_004315412.1 PFAM: Alkyl hydroperoxide reductase subunit C/ thiol specific antioxidant; KEGG: lby:Lbys_2440 redoxin domain protein YP_004315413.1 KEGG: xtr:780176 lysine (K)-specific demethylase 5C YP_004315414.1 KEGG: apj:APJL_1739 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004315415.1 manually curated; PFAM: Helix-turn-helix type 3; KEGG: lby:Lbys_1351 helix-TurN-helix domain protein; SMART: Helix-turn-helix type 3 YP_004315416.1 KEGG: lby:Lbys_1351 helix-TurN-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004315417.1 PFAM: protein of unknown function DUF1016; KEGG: mma:MM_2979 hypothetical protein YP_004315418.1 KEGG: ptm:GSPATT00033670001 hypothetical protein YP_004315419.1 KEGG: cpi:Cpin_6486 transposase IS4 family protein YP_004315420.1 PFAM: transposase, IS66; KEGG: lby:Lbys_2230 transposase YP_004315421.1 KEGG: lby:Lbys_1035 hypothetical protein YP_004315422.1 KEGG: lby:Lbys_1035 hypothetical protein YP_004315423.1 KEGG: tpr:Tpau_3610 molybdopterin dinucleotide-binding region YP_004315424.1 KEGG: lby:Lbys_1046 glycosyl transferase YP_004315425.1 KEGG: pla:Plav_3498 hypothetical protein YP_004315426.1 KEGG: bsu:BSU25870 hypothetical protein; skin element YP_004315427.1 KEGG: bca:BCE_1246 hypothetical protein YP_004315428.1 KEGG: dfe:Dfer_1348 hypothetical protein YP_004315429.1 PFAM: glucose-methanol-choline oxidoreductase, N-terminal; FAD dependent oxidoreductase; KEGG: pat:Patl_2686 glucose-methanol-choline oxidoreductase YP_004315430.1 PFAM: metallo-dependent phosphatase; KEGG: cpi:Cpin_2675 metallophosphoesterase YP_004315431.1 KEGG: zpr:ZPR_2156 alpha-1,2-mannosidase; TIGRFAM: alpha-1,2-mannosidase, PFAM: glycosyl hydrolase 92 YP_004315432.1 PFAM: chloride channel, voltage gated; KEGG: cpi:Cpin_4018 chloride channel core YP_004315433.1 PFAM: esterase; KEGG: pdi:BDI_3403 hypothetical protein YP_004315434.1 PFAM: PepSY-associated TM helix; KEGG: chu:CHU_3757 iron uptake protein YP_004315435.1 KEGG: coc:Coch_0620 hypothetical protein YP_004315436.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_1428 TonB-dependent receptor plug YP_004315437.1 KEGG: fjo:Fjoh_4270 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004315438.1 KEGG: fps:FP1937 hypothetical protein YP_004315439.1 KEGG: cpi:Cpin_4194 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain YP_004315440.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: ara:Arad_4439 NADPH-dependent F420 reductase YP_004315441.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sli:Slin_1725 NAD-dependent epimerase/dehydratase YP_004315442.1 PFAM: Uncharacterised conserved protein UCP014753; KEGG: cpi:Cpin_6822 hypothetical protein YP_004315443.1 KEGG: rbi:RB2501_04990 gamma-glutamyl carboxylase-like protein; PFAM: vitamin K-dependent gamma-carboxylase; SMART: HTTM YP_004315444.1 KEGG: cgr:CAGL0G02497g hypothetical protein YP_004315445.1 KEGG: dfe:Dfer_1973 L-sorbosone dehydrogenase YP_004315446.1 PFAM: RagB/SusD; KEGG: sli:Slin_1221 RagB/SusD domain protein YP_004315447.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: fjo:Fjoh_3127 TonB-dependent receptor YP_004315448.1 PFAM: FecR protein; KEGG: cpi:Cpin_2819 anti-FecI sigma factor, FecR YP_004315449.1 KEGG: cpi:Cpin_2818 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004315450.1 KEGG: phe:Phep_2732 SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter YP_004315451.1 KEGG: npu:Npun_R5328 inositol oxygenase HrmE; PFAM: inositol oxygenase YP_004315452.1 KEGG: cpi:Cpin_5093 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004315453.1 PFAM: protein of unknown function DUF2480; KEGG: phe:Phep_4025 hypothetical protein YP_004315454.1 PFAM: NADPH-dependent FMN reductase; KEGG: cpi:Cpin_3357 NADPH-dependent FMN reductase YP_004315455.1 PFAM: carboxylesterase, type B; KEGG: sli:Slin_0653 carboxylesterase YP_004315456.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-3; PAS fold-4; PAS fold; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; KEGG: tdn:Suden_0219 multi-sensor hybrid histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; PAC motif; Signal transduction response regulator, receiver domain YP_004315457.1 KEGG: ipo:Ilyop_0561 amino acid carrier protein; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter YP_004315458.1 PFAM: Major facilitator superfamily MFS-1; KEGG: phe:Phep_2207 major facilitator superfamily MFS_1 YP_004315459.1 HAMAP: metal-dependent hydrolase; KEGG: ppm:PPSC2_c1451 hypothetical protein YP_004315460.1 KEGG: dfe:Dfer_1262 protein of unknown function UPF0047; TIGRFAM: Uncharacterised protein family UPF0047; PFAM: Uncharacterised protein family UPF0047 YP_004315461.1 TIGRFAM: Parallel beta-helix repeat-2; KEGG: mma:MM_0066 hypothetical protein YP_004315462.1 KEGG: cpi:Cpin_0313 hypothetical protein YP_004315463.1 KEGG: cpi:Cpin_5614 hypothetical protein YP_004315464.1 PFAM: oxidoreductase, N-terminal; KEGG: pdi:BDI_3200 dehydrogenase YP_004315465.1 KEGG: zpr:ZPR_1397 hypothetical protein YP_004315466.1 KEGG: phe:Phep_3344 helix-turn-helix-domain containing protein AraC type; PFAM: HTH transcriptional regulator, AraC; ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004315467.1 KEGG: bcq:BCQ_3176 SH3 domain protein; PFAM: Variant SH3; SMART: Src homology-3 domain YP_004315468.1 KEGG: cpi:Cpin_4838 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3 YP_004315469.1 PFAM: protein of unknown function DUF808; KEGG: cpi:Cpin_2963 protein of unknown function DUF808 YP_004315470.1 KEGG: zpr:ZPR_3375 predicted transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004315471.1 PFAM: Heavy metal transport/detoxification protein; KEGG: cat:CA2559_11673 probable copper-transporting ATPase YP_004315472.1 manually curated; KEGG: fjo:Fjoh_3090 hypothetical protein YP_004315473.1 manually curated; KEGG: cpi:Cpin_6130 hypothetical protein YP_004315474.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: cpi:Cpin_6129 TonB-dependent receptor plug YP_004315475.1 PFAM: Cation efflux protein; KEGG: sat:SYN_03034 cobalt-zinc-cadmium resistance protein YP_004315476.1 manually curated; KEGG: lby:Lbys_3601 hypothetical protein YP_004315477.1 KEGG: cpi:Cpin_2689 heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; Outer membrane efflux protein YP_004315478.1 TIGRFAM: Secretion protein HlyD; KEGG: cpi:Cpin_2690 efflux transporter RND family, MFP subunit YP_004315479.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: gfo:GFO_1200 heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase YP_004315480.1 PFAM: metallo-dependent phosphatase; KEGG: fjo:Fjoh_3084 metallophosphoesterase YP_004315481.1 PFAM: metallo-dependent phosphatase; KEGG: fjo:Fjoh_3084 metallophosphoesterase YP_004315482.1 PFAM: Flavin-containing monooxygenase-like; KEGG: zpr:ZPR_2618 monooxygenase YP_004315483.1 KEGG: fjo:Fjoh_3083 arsenic resistance protein; TIGRFAM: Arsenical-resistance protein ACR3; PFAM: sodium symporter YP_004315484.1 KEGG: cpi:Cpin_6113 protein tyrosine phosphatase; PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight YP_004315485.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: fjo:Fjoh_4419 GCN5-related N-acetyltransferase YP_004315486.1 KEGG: phe:Phep_3148 hypothetical protein YP_004315487.1 KEGG: phe:Phep_3149 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004315488.1 KEGG: phu:Phum_PHUM252390 serine/threonine-protein kinase polo YP_004315489.1 TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: dfe:Dfer_0949 phage/plasmid-related protein YP_004315490.1 KEGG: cel:F28D1.10 Gut on EXterior family member (gex-3) YP_004315491.1 KEGG: pfh:PFHG_03692 conserved hypothetical protein YP_004315492.1 KEGG: mba:Mbar_A0463 ubiquinone/menaquinone biosynthesis methyltransferase YP_004315493.1 KEGG: phe:Phep_2664 hypothetical protein YP_004315494.1 KEGG: dfe:Dfer_2359 hypothetical protein YP_004315495.1 TIGRFAM: Conjugative transposon, TraM; KEGG: zpr:ZPR_3465 hypothetical protein YP_004315496.1 TIGRFAM: Conjugative transposon, TraK; KEGG: zpr:ZPR_3463 hypothetical protein YP_004315497.1 KEGG: zpr:ZPR_3462 TraJ family protein conjugative transposon; TIGRFAM: Conjugative transposon, TraJ; PFAM: Conjugative transposon, TraJ, C-terminal YP_004315498.1 KEGG: fjo:Fjoh_4354 hypothetical protein YP_004315499.1 KEGG: zpr:ZPR_3460 hypothetical protein YP_004315500.1 KEGG: zpr:ZPR_3459 hypothetical protein YP_004315501.1 TIGRFAM: Conjugation system ATPase, TraG; KEGG: zpr:ZPR_3458 type IV secretory pathway VirB4 components-like protein YP_004315502.1 KEGG: zpr:ZPR_3457 hypothetical protein YP_004315503.1 KEGG: fjo:Fjoh_3548 hypothetical protein YP_004315504.1 KEGG: zpr:ZPR_3453 hypothetical protein YP_004315505.1 PFAM: Tetracycline regulation of excision, RteC; KEGG: bth:BT_0110 regulatory protein YP_004315506.1 KEGG: chu:CHU_1178 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004315507.1 KEGG: cob:COB47_0794 glycoside hydrolase 2 sugar binding YP_004315508.1 KEGG: fps:FP1574 hypothetical protein YP_004315510.1 KEGG: cpi:Cpin_5161 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain YP_004315511.1 PFAM: Signal transduction histidine kinase, internal region; KEGG: cpi:Cpin_3395 signal transduction histidine kinase, LytS YP_004315512.1 KEGG: sli:Slin_5978 hypothetical protein YP_004315513.1 KEGG: phe:Phep_0893 phospholipase D/transphosphatidylase YP_004315514.1 KEGG: chu:CHU_1496 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004315516.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: phe:Phep_4011 TonB-dependent receptor plug YP_004315517.1 PFAM: RagB/SusD; KEGG: cpi:Cpin_5561 RagB/SusD domain protein YP_004315518.1 PFAM: Redoxin; KEGG: lby:Lbys_1985 alkyl hydroperoxide reductase/thiol specific antioxidant/mal allergen YP_004315519.1 KEGG: rno:100360690 tear acid-lipase-like protein-like YP_004315520.1 KEGG: cpi:Cpin_5558 hypothetical protein YP_004315521.1 KEGG: pru:PRU_0825 cyclic nucleotide-binding domain-containing protein YP_004315522.1 KEGG: zpr:ZPR_3421 type IV secretory pathway VirD4 components-like protein YP_004315523.1 PFAM: endonuclease relaxase, MobA/VirD2; KEGG: fjo:Fjoh_4380 relaxase/mobilization nuclease YP_004315524.1 KEGG: fjo:Fjoh_3762 hypothetical protein YP_004315526.1 PFAM: Domain of unknown function DUF418; KEGG: fbc:FB2170_11646 transporter YP_004315527.1 PFAM: protein of unknown function DUF326; KEGG: dfe:Dfer_0783 protein of unknown function DUF326 YP_004315528.1 PFAM: Domain of unknown function DUF305; KEGG: chu:CHU_1508 hypothetical protein YP_004315529.1 KEGG: phe:Phep_1936 helix-turn-helix-domain containing protein AraC type; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004315530.1 KEGG: pan:PODANSg810 hypothetical protein YP_004315531.1 KEGG: phe:Phep_3057 hypothetical protein YP_004315532.1 PFAM: alpha/beta hydrolase fold-1; KEGG: mjl:Mjls_4470 alpha/beta hydrolase fold YP_004315533.1 TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: phe:Phep_3058 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase YP_004315534.1 PFAM: Multicopper oxidase type 3; Multicopper oxidase type 1; Multicopper oxidase type 2; KEGG: sli:Slin_6893 multicopper oxidase type 3 YP_004315535.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: zpr:ZPR_3414 copper-transporting ATPase, P-type (CopB); PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase YP_004315536.1 KEGG: rbi:RB2501_04695 hypothetical protein YP_004315537.1 TIGRFAM: Secretion protein HlyD; KEGG: phe:Phep_3050 efflux transporter RND family, MFP subunit YP_004315538.1 KEGG: phe:Phep_3051 hypothetical protein YP_004315539.1 KEGG: fjo:Fjoh_3070 outer membrane protein-like protein YP_004315540.1 PFAM: Acriflavin resistance protein; KEGG: phe:Phep_3053 heavy metal efflux pump, CzcA family YP_004315541.1 PFAM: Acriflavin resistance protein; KEGG: phe:Phep_3054 heavy metal efflux pump, CzcA family YP_004315542.1 KEGG: lby:Lbys_0544 hypothetical protein YP_004315543.1 KEGG: phe:Phep_3055 hypothetical protein YP_004315544.1 manually curated; KEGG: phe:Phep_3056 hypothetical protein YP_004315545.1 KEGG: zpr:ZPR_3495 hypothetical protein YP_004315546.1 KEGG: zpr:ZPR_3469 site-specific recombinase; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal YP_004315547.1 KEGG: cpi:Cpin_4250 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004315548.1 PFAM: Monooxygenase, FAD-binding; KEGG: cpi:Cpin_4249 monooxygenase FAD-binding YP_004315549.1 PFAM: RecF/RecN/SMC; KEGG: fba:FIC_01102 hypothetical protein YP_004315550.1 PFAM: Pirin, C-terminal; Pirin, N-terminal; KEGG: lby:Lbys_0780 pirin domain protein YP_004315551.1 KEGG: lby:Lbys_0779 hypothetical protein YP_004315552.1 PFAM: Helix-turn-helix, HxlR type; KEGG: lby:Lbys_0778 transcriptional regulator, hxlr family YP_004315553.1 KEGG: tdn:Suden_0736 sulfate anion transporter; TIGRFAM: Sulphate anion transporter; PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS YP_004315554.1 PFAM: Abortive phage infection; KEGG: dma:DMR_42550 hypothetical protein YP_004315555.1 PFAM: Integrase, catalytic core, phage; KEGG: fba:FIC_00607 probable integrase YP_004315556.1 KEGG: ptm:GSPATT00005224001 hypothetical protein YP_004315557.1 KEGG: fps:FP1539 hypothetical protein YP_004315558.1 manually curated; KEGG: tva:TVAG_121150 hypothetical protein YP_004315559.1 manually curated; KEGG: sli:Slin_7061 hypothetical protein YP_004315560.1 KEGG: sli:Slin_7043 hypothetical protein YP_004315561.1 PFAM: Filamentation induced by cAMP/death on curing-related; HTH transcriptional regulator, MarR; KEGG: phe:Phep_0903 filamentation induced by cAMP protein Fic YP_004315562.1 PFAM: Integrase, catalytic core, phage; KEGG: dfe:Dfer_0952 integrase YP_004315563.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165; KEGG: lby:Lbys_0994 transposase IS204/is1001/IS1096/is1165 family protein YP_004315564.1 KEGG: lby:Lbys_0995 hypothetical protein YP_004315565.1 SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Malto-oligosyltrehalose synthase; glycoside hydrolase, family 77; KEGG: sli:Slin_5282 malto-oligosyltrehalose synthase; PFAM: glycoside hydrolase, family 77; glycosyl hydrolase, family 13, catalytic domain YP_004315566.1 SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Malto-oligosyltrehalose trehalohydrolase; KEGG: dfe:Dfer_0397 malto-oligosyltrehalose trehalohydrolase; PFAM: glycosyl hydrolase, family 13, catalytic domain; glycoside hydrolase, family 13, N-terminal YP_004315567.1 SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: glycogen debranching enzyme; KEGG: cpi:Cpin_2576 glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13, N-terminal; glycosyl hydrolase, family 13, catalytic domain YP_004315568.1 PFAM: peptidase S10, serine carboxypeptidase; KEGG: zpr:ZPR_2270 S10 family carboxypeptidase YP_004315569.1 PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; KEGG: fjo:Fjoh_4711 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_004315570.1 KEGG: chu:CHU_1365 transcriptional regulator; PFAM: Iron dependent repressor; Iron dependent repressor, N-terminal; Ferrous iron transporter Feosubunit alpha; SMART: Iron dependent repressor, diptheria toxin type; Ferrous iron transporter Feosubunit alpha YP_004315571.1 TIGRFAM: SsrA-binding protein; HAMAP: SsrA-binding protein; KEGG: phe:Phep_1552 SsrA-binding protein; PFAM: SsrA-binding protein YP_004315572.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; HAMAP: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: phe:Phep_1551 protein-L-isoaspartate O-methyltransferase YP_004315573.1 KEGG: phe:Phep_3950 hypothetical protein YP_004315574.1 TIGRFAM: Primosomal protein n; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: phe:Phep_1550 primosomal protein N'; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004315575.1 PFAM: protein of unknown function DUF423; KEGG: phe:Phep_1549 protein of unknown function DUF423 YP_004315576.1 KEGG: phe:Phep_1548 hypothetical protein YP_004315577.1 KEGG: phe:Phep_1546 peptidase M22 glycoprotease; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; PFAM: peptidase M22, glycoprotease YP_004315578.1 PFAM: protein of unknown function DUF37; manually curated; TIGRFAM: protein of unknown function DUF37; KEGG: phe:Phep_1545 protein of unknown function DUF37; HAMAP: protein of unknown function DUF37 YP_004315579.1 KEGG: phe:Phep_1544 ribonuclease P protein component; TIGRFAM: ribonuclease P; HAMAP: ribonuclease P YP_004315580.1 TIGRFAM: ribosomal protein L34; HAMAP: ribosomal protein L34; KEGG: phe:Phep_1543 ribosomal protein L34; PFAM: ribosomal protein L34 YP_004315581.1 TIGRFAM: Large-conductance mechanosensitive channel; HAMAP: Large-conductance mechanosensitive channel; KEGG: fjo:Fjoh_1319 large conductance mechanosensitive channel protein; PFAM: Large-conductance mechanosensitive channel YP_004315582.1 KEGG: phe:Phep_1532 RNA polymerase sigma-54 factor, RpoN; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54 YP_004315583.1 KEGG: cpi:Cpin_3938 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004315584.1 KEGG: chu:CHU_0827 peptidyl-arginyl deiminase; PFAM: peptidyl-arginine deiminase, Porphyromonas-type YP_004315585.1 KEGG: lby:Lbys_2288 stress responsive alpha-beta barrel domaiN-containing protein; PFAM: stress responsive alpha-beta barrel; SMART: stress responsive alpha-beta barrel YP_004315586.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; KEGG: phe:Phep_0705 carbamoyl phosphate synthase small subunit; PFAM: carbamoyl-phosphate synthase, small subunit, N-terminal; glutamine amidotransferase class-I, C-terminal YP_004315587.1 PFAM: Enolase, C-terminal; Enolase, N-terminal; TIGRFAM: Enolase; HAMAP: Enolase; KEGG: phe:Phep_0701 phosphopyruvate hydratase YP_004315588.1 KEGG: phe:Phep_0699 septum formation initiator YP_004315589.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: phe:Phep_0695 3-oxoacyl-(acyl-carrier-protein) reductase; SMART: polyketide synthase/Fatty acid synthase, KR YP_004315590.1 PFAM: thioesterase; KEGG: phe:Phep_2501 thioesterase superfamily protein YP_004315591.1 TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; KEGG: phe:Phep_0691 ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit, C-terminal; ribonucleotide reductase large subunit, N-terminal; ATP-cone YP_004315592.1 KEGG: cpi:Cpin_1975 ribonucleoside-diphosphate reductase; PFAM: ribonucleotide reductase YP_004315593.1 KEGG: phe:Phep_0656 DNA mismatch repair protein MutS domain protein; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal YP_004315594.1 PFAM: transposase, IS4-like; KEGG: bvu:BVU_1595 transposase YP_004315595.1 KEGG: zpr:ZPR_0206 hypothetical protein YP_004315596.1 manually curated; HAMAP: SPOUT methyltransferase, predicted; KEGG: phe:Phep_0655 protein of unknown function DUF163; PFAM: SPOUT methyltransferase, predicted YP_004315598.1 KEGG: phe:Phep_0653 hypothetical protein YP_004315599.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: phe:Phep_0652 peptidyl-prolyl cis-trans isomerase cyclophilin type YP_004315600.1 KEGG: phe:Phep_0647 hypothetical protein YP_004315601.1 TIGRFAM: Purine nucleoside phosphorylase I, inosine/guanosine-specific; inosine guanosine/xanthosine phosphorylase; KEGG: phe:Phep_0646 purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: nucleoside phosphorylase domain YP_004315602.1 PFAM: Tetraacyldisaccharide 4'-kinase; TIGRFAM: Tetraacyldisaccharide 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; KEGG: phe:Phep_0645 tetraacyldisaccharide 4'-kinase YP_004315603.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase 1; KEGG: phe:Phep_0644 delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase domain YP_004315604.1 PFAM: phosphate-selective porin O/P; KEGG: lby:Lbys_3512 phosphate-selective porin o and P YP_004315605.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: dfe:Dfer_5274 GCN5-related N-acetyltransferase YP_004315606.1 KEGG: ehi:EHI_131200 hypothetical protein YP_004315607.1 PFAM: activator of Hsp90 ATPase homologue 1-like; KEGG: chu:CHU_2104 hypothetical protein YP_004315608.1 PFAM: Mechanosensitive ion channel MscS; KEGG: cpi:Cpin_3972 MscS mechanosensitive ion channel YP_004315609.1 KEGG: phe:Phep_2626 intracellular protease PfpI family; TIGRFAM: peptidase C56, PfpI; PFAM: ThiJ/PfpI YP_004315610.1 KEGG: fba:FIC_01510 cell division inhibitor YP_004315612.1 PFAM: YkuD domain; peptidoglycan binding-like; KEGG: cpi:Cpin_0941 ErfK/YbiS/YcfS/YnhG family protein YP_004315613.1 PFAM: DinB; KEGG: cpi:Cpin_7171 DinB family protein YP_004315614.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sli:Slin_4881 major facilitator superfamily MFS_1 YP_004315615.1 TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; HAMAP: GTP-binding protein Era; KEGG: phe:Phep_3777 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2 YP_004315616.1 KEGG: lby:Lbys_0995 hypothetical protein YP_004315617.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165; KEGG: lby:Lbys_0994 transposase IS204/is1001/IS1096/is1165 family protein YP_004315618.1 TIGRFAM: isocitrate dehydrogenase NADP-dependent, monomeric type; KEGG: zpr:ZPR_3604 NADP-dependent monomeric type isocitrate dehydrogenase; PFAM: isocitrate dehydrogenase NADP-dependent, monomeric type YP_004315619.1 PFAM: UspA; KEGG: phe:Phep_0767 UspA domain protein YP_004315620.1 KEGG: phe:Phep_2662 hypothetical protein YP_004315621.1 TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; HAMAP: GTP-binding, EngA; KEGG: phe:Phep_3778 small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related YP_004315622.1 KEGG: phe:Phep_0779 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004315623.1 KEGG: phe:Phep_0774 glucosamine-6-phosphate deaminase; PFAM: glucosamine/galactosamine-6-phosphate isomerase YP_004315624.1 KEGG: phe:Phep_0775 oxidoreductase domain protein; PFAM: oxidoreductase, N-terminal YP_004315625.1 PFAM: acetyl xylan esterase; KEGG: bvu:BVU_1811 hypothetical protein YP_004315626.1 KEGG: dfe:Dfer_2439 hypothetical protein YP_004315627.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_2438 TonB-dependent receptor plug YP_004315628.1 SMART: peptidase S41; PDZ/DHR/GLGF; TIGRFAM: peptidase S41A, C-terminal peptidase; KEGG: phe:Phep_3779 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF YP_004315629.1 KEGG: phe:Phep_3781 hypothetical protein YP_004315630.1 KEGG: fjo:Fjoh_3798 hypothetical protein YP_004315631.1 TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; KEGG: phe:Phep_3799 methionine synthase; PFAM: Homocysteine S-methyltransferase; Pterin-binding; methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; vitamin B12-dependent methionine synthase, activation domain YP_004315632.1 PFAM: 23S rRNA-associated protein; KEGG: gme:Gmet_2891 hypothetical protein YP_004315633.1 KEGG: phe:Phep_3800 methylenetetrahydrofolate reductase (NAD(P)H); PFAM: methylenetetrahydrofolate reductase YP_004315634.1 KEGG: brm:Bmur_0763 hypothetical protein YP_004315635.1 KEGG: sli:Slin_2726 peroxiredoxin, OsmC subfamily; TIGRFAM: peroxiredoxin, osmotically inducible protein C, subgroup; PFAM: peroxiredoxin, OsmC-like protein YP_004315636.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: cpi:Cpin_6733 TonB-dependent receptor YP_004315637.1 KEGG: cpi:Cpin_6734 hypothetical protein YP_004315638.1 KEGG: lby:Lbys_0103 rhodanese domain protein; PFAM: Rhodanese-like; thioredoxin domain; SMART: Rhodanese-like YP_004315639.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: phe:Phep_2084 FAD dependent oxidoreductase YP_004315640.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_2523 TonB-dependent receptor YP_004315641.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_2522 RagB/SusD domain protein YP_004315642.1 PFAM: Sulfatase; KEGG: cpi:Cpin_5313 sulfatase YP_004315643.1 KEGG: dfe:Dfer_2519 rhodanese domain protein; PFAM: thioredoxin domain; Rhodanese-like; SMART: Rhodanese-like YP_004315644.1 KEGG: dfe:Dfer_4506 hypothetical protein YP_004315645.1 PFAM: Fatty acid hydroxylase; KEGG: dfe:Dfer_4507 fatty acid hydroxylase YP_004315646.1 PFAM: Uncharacterised protein family UPF0324, prokaryote; KEGG: phe:Phep_2085 hypothetical protein YP_004315647.1 PFAM: Sulphatase-modifying factor; KEGG: sli:Slin_1433 protein of unknown function DUF323 YP_004315648.1 KEGG: phe:Phep_1139 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC YP_004315649.1 KEGG: phe:Phep_1142 hypothetical protein YP_004315650.1 KEGG: phe:Phep_1138 enoyl-(acyl-carrier-protein) reductase (NADH) YP_004315651.1 KEGG: ngr:NAEGRDRAFT_68800 hypothetical protein YP_004315652.1 KEGG: asu:Asuc_2090 hypothetical protein YP_004315653.1 KEGG: zpr:ZPR_3730 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004315654.1 KEGG: cel:K04D7.5 abnormal GONad development family member (gon-4) YP_004315655.1 KEGG: mba:Mbar_A0745 hypothetical protein YP_004315656.1 KEGG: ott:OTT_0180 hypothetical protein YP_004315657.1 KEGG: fba:FIC_00606 hypothetical protein YP_004315658.1 KEGG: pdi:BDI_0472 hypothetical protein YP_004315659.1 KEGG: cpi:Cpin_2274 hypothetical protein YP_004315660.1 KEGG: dfe:Dfer_4421 hypothetical protein YP_004315661.1 KEGG: phe:Phep_1132 ATPase AAA; PFAM: ATPase, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; UvrB/UvrC protein; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core YP_004315662.1 TIGRFAM: ABC transporter ATP-binding protein, ChvD; PFAM: ABC transporter-like; KEGG: phe:Phep_1117 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004315663.1 KEGG: cyc:PCC7424_3425 iron transporter substrate-binding protein YP_004315664.1 KEGG: zpr:ZPR_3184 hypothetical protein YP_004315665.1 PFAM: protein of unknown function DUF458, RNase H-like; KEGG: phe:Phep_1009 protein of unknown function DUF458 YP_004315666.1 PFAM: transposase, IS116/IS110/IS902; transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: fjo:Fjoh_2997 transposase IS116/IS110/IS902 family protein YP_004315667.1 PFAM: Redoxin; KEGG: phe:Phep_1325 redoxin domain protein YP_004315668.1 PFAM: ABC transporter-like; KEGG: phe:Phep_3441 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004315669.1 KEGG: phe:Phep_3442 hypothetical protein YP_004315670.1 KEGG: pdi:BDI_0408 RNA polymerase ECF-type sigma factor YP_004315671.1 KEGG: sli:Slin_5681 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004315672.1 KEGG: phe:Phep_3527 malate/L-lactate dehydrogenase; PFAM: malate/L-lactate dehydrogenase YP_004315673.1 KEGG: lby:Lbys_1747 efflux transporter rnd family, mfp subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004315674.1 KEGG: lby:Lbys_1748 transporter hydrophobe/amphiphile efflux-1 (hae1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004315675.1 KEGG: dfe:Dfer_2175 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004315676.1 KEGG: phe:Phep_3528 signal peptidase I; TIGRFAM: peptidase S26A, signal peptidase I; PFAM: peptidase S24/S26A/S26B, conserved region YP_004315677.1 PFAM: dihydrodipicolinate reductase, C-terminal; dihydrodipicolinate reductase, N-terminal; TIGRFAM: dihydrodipicolinate reductase, bacterial/plant; HAMAP: dihydrodipicolinate reductase, bacterial/plant; KEGG: phe:Phep_3529 dihydrodipicolinate reductase YP_004315678.1 KEGG: rbi:RB2501_01620 hypothetical protein YP_004315679.1 TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: phe:Phep_3531 ParB-like partition protein; SMART: ParB-like nuclease YP_004315680.1 PFAM: cobyrinic acid a,c-diamide synthase; KEGG: phe:Phep_3532 cobyrinic acid ac-diamide synthase YP_004315681.1 PFAM: NADPH-dependent FMN reductase; KEGG: phe:Phep_3533 NADPH-dependent FMN reductase YP_004315682.1 KEGG: phe:Phep_3507 regulatory protein DeoR; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004315683.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: phe:Phep_2249 TonB-dependent receptor plug YP_004315684.1 PFAM: RagB/SusD; KEGG: phe:Phep_2248 RagB/SusD domain protein YP_004315685.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dfe:Dfer_3129 major facilitator superfamily MFS_1 YP_004315686.1 KEGG: dfe:Dfer_3130 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004315687.1 PFAM: carbohydrate kinase, FGGY, N-terminal; carbohydrate kinase, FGGY, C-terminal; KEGG: phe:Phep_3504 carbohydrate kinase FGGY YP_004315688.1 KEGG: phe:Phep_3503 carbohydrate kinase FGGY; PFAM: carbohydrate kinase, FGGY, N-terminal; carbohydrate kinase, FGGY, C-terminal YP_004315689.1 KEGG: dfe:Dfer_3133 phosphoglycerate mutase; PFAM: histidine phosphatase superfamily, clade-1; SMART: histidine phosphatase superfamily, clade-1 YP_004315690.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: dfe:Dfer_3134 glycerophosphoryl diester phosphodiesterase YP_004315691.1 KEGG: phe:Phep_3881 regulatory protein GntR HTH; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004315693.1 PFAM: PilT protein, N-terminal; KEGG: gvi:glr2432 hypothetical protein YP_004315694.1 KEGG: fps:FP1227 XRE family transcriptional regulator YP_004315695.1 PFAM: Bacterial alpha-L-rhamnosidase; Bacterial alpha-L-rhamnosidase N-terminal; KEGG: phe:Phep_3887 alpha-L-rhamnosidase YP_004315696.1 PFAM: Bacterial alpha-L-rhamnosidase; Bacterial alpha-L-rhamnosidase N-terminal; KEGG: pdi:BDI_3139 glycoside hydrolase YP_004315697.1 PFAM: glycoside hydrolase, family 2, carbohydrate-binding; KEGG: phe:Phep_2304 glycoside hydrolase 2 sugar binding YP_004315698.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; KEGG: phe:Phep_0426 type I phosphodiesterase/nucleotide pyrophosphatase YP_004315699.1 KEGG: phe:Phep_0427 hypothetical protein YP_004315700.1 KEGG: sli:Slin_0084 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB YP_004315701.1 PFAM: UbiA prenyltransferase; KEGG: sli:Slin_0160 UbiA prenyltransferase YP_004315702.1 PFAM: deoxyribonuclease, TatD-related; KEGG: phe:Phep_0430 TatD-related deoxyribonuclease YP_004315703.1 KEGG: phe:Phep_0431 hypothetical protein YP_004315704.1 KEGG: phe:Phep_0432 hypothetical protein YP_004315705.1 PFAM: protein of unknown function DUF1080; KEGG: dfe:Dfer_3175 protein of unknown function DUF1080 YP_004315706.1 PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; KEGG: dfe:Dfer_3167 oxidoreductase domain protein YP_004315707.1 KEGG: sli:Slin_0969 xylose isomerase domain protein TIM barrel YP_004315708.1 KEGG: dfe:Dfer_3169 hypothetical protein YP_004315709.1 KEGG: dfe:Dfer_3170 hypothetical protein YP_004315710.1 TIGRFAM: Haem-binding domain, KEGG: sli:Slin_0965 heme-binding protein YP_004315711.1 PFAM: RagB/SusD; KEGG: rmr:Rmar_0688 RagB/SusD domain protein YP_004315712.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: rmr:Rmar_0687 TonB-dependent receptor plug YP_004315713.1 PFAM: FecR protein; KEGG: fjo:Fjoh_3803 anti-FecI sigma factor, FecR YP_004315714.1 KEGG: phe:Phep_1243 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004315715.1 PFAM: Bacterial alpha-L-rhamnosidase; Bacterial alpha-L-rhamnosidase N-terminal; KEGG: bth:BT_2524 alpha-rhamnosidase YP_004315716.1 PFAM: protein of unknown function DUF1080; KEGG: fbc:FB2170_12071 hypothetical protein YP_004315717.1 PFAM: oxidoreductase, N-terminal; KEGG: fbc:FB2170_12076 probable dehydrogenase YP_004315718.1 PFAM: glycoside hydrolase, family 2, carbohydrate-binding; KEGG: cpi:Cpin_3297 glycoside hydrolase 2 sugar binding YP_004315719.1 KEGG: cpi:Cpin_4919 L-rhamnose 1-epimerase; TIGRFAM: L-rhamnose 1-epimerase; PFAM: Rhamnose mutarotase YP_004315720.1 PFAM: glycosyl hydrolase, family 88; KEGG: sli:Slin_1806 glycosyl hydrolase 88 YP_004315721.1 PFAM: Lipase, GDSL; KEGG: ote:Oter_1356 GDSL family lipase YP_004315722.1 KEGG: fjo:Fjoh_4223 hypothetical protein YP_004315723.1 KEGG: fjo:Fjoh_4224 hypothetical protein YP_004315724.1 PFAM: glycoside hydrolase, family 28; KEGG: rmr:Rmar_2391 glycoside hydrolase 28 YP_004315725.1 KEGG: fjo:Fjoh_2628 fibronectin, type III domain-containing protein YP_004315726.1 KEGG: fjo:Fjoh_4231 hypothetical protein YP_004315727.1 KEGG: sus:acid_4055 hypothetical protein YP_004315728.1 PFAM: RagB/SusD; KEGG: fjo:Fjoh_4233 RagB/SusD domain-containing protein YP_004315729.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: fjo:Fjoh_4234 TonB-dependent receptor, plug YP_004315730.1 PFAM: glycoside hydrolase, family 2, carbohydrate-binding; glycoside hydrolase, family 2, TIM barrel; KEGG: bth:BT_4151 beta-glucuronidase YP_004315731.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_0773 RagB/SusD domain protein YP_004315732.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_0774 TonB-dependent receptor plug YP_004315733.1 PFAM: RagB/SusD; KEGG: phe:Phep_0771 RagB/SusD domain protein YP_004315734.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: bth:BT_4660 hypothetical protein YP_004315735.1 KEGG: phe:Phep_2782 glycoside hydrolase 2 sugar binding; PFAM: glycoside hydrolase, family 2, carbohydrate-binding; glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; glycoside hydrolase, family 2, TIM barrel YP_004315736.1 PFAM: Bacterial alpha-L-rhamnosidase; KEGG: bvu:BVU_0174 glycoside hydrolase YP_004315737.1 PFAM: transposase, IS116/IS110/IS902; KEGG: eck:EC55989_4650 transposase, IS110 family YP_004315738.1 KEGG: cpi:Cpin_7184 transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004315739.1 PFAM: acetyl xylan esterase; KEGG: dfe:Dfer_1236 acetyl xylan esterase YP_004315740.1 PFAM: glycoside hydrolase, family 28; KEGG: bvu:BVU_1767 glycoside hydrolase YP_004315741.1 PFAM: FecR protein; KEGG: cpi:Cpin_7183 anti-FecI sigma factor, FecR YP_004315742.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_2302 TonB-dependent receptor plug YP_004315743.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_2301 RagB/SusD domain protein YP_004315744.1 KEGG: bth:BT_2959 hypothetical protein YP_004315745.1 KEGG: dfe:Dfer_2299 hypothetical protein YP_004315746.1 PFAM: glycoside hydrolase, family 28; KEGG: dfe:Dfer_2300 glycoside hydrolase 28 YP_004315747.1 PFAM: glycosyl hydrolase, family 88; KEGG: sli:Slin_0456 glycosyl hydrolase 88 YP_004315748.1 PFAM: RagB/SusD; KEGG: lby:Lbys_2357 ragb/susd domain protein YP_004315749.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: lby:Lbys_2358 TonB-dependent receptor plug YP_004315750.1 KEGG: fjo:Fjoh_4104 hypothetical protein YP_004315751.1 KEGG: bvu:BVU_0163 hypothetical protein YP_004315753.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: pdi:BDI_0490 hypothetical protein YP_004315754.1 KEGG: pdi:BDI_0491 hypothetical protein YP_004315755.1 KEGG: dfe:Dfer_4742 alpha-1,2-mannosidase; TIGRFAM: alpha-1,2-mannosidase, PFAM: glycosyl hydrolase 92 YP_004315756.1 KEGG: dfe:Dfer_3854 hypothetical protein YP_004315757.1 KEGG: cpi:Cpin_6098 hypothetical protein YP_004315758.1 KEGG: phe:Phep_2452 hypothetical protein YP_004315759.1 PFAM: transposase, IS4-like; KEGG: bvu:BVU_1595 transposase YP_004315760.1 KEGG: phe:Phep_2452 hypothetical protein YP_004315761.1 KEGG: cat:CA2559_03570 probable lipoprotein YP_004315762.1 KEGG: phe:Phep_2453 hypothetical protein YP_004315763.1 KEGG: cpi:Cpin_2034 hypothetical protein YP_004315764.1 KEGG: phe:Phep_2454 transcriptional regulator domain protein; PFAM: Signal transduction response regulator, C-terminal; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004315765.1 KEGG: phe:Phep_2455 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004315766.1 PFAM: carbohydrate kinase, FGGY, N-terminal; KEGG: phe:Phep_3882 carbohydrate kinase FGGY YP_004315767.1 PFAM: xylose isomerase, TIM barrel domain; KEGG: phe:Phep_3883 xylose isomerase domain protein TIM barrel YP_004315768.1 TIGRFAM: Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; KEGG: phe:Phep_3884 short chain dehydrogenase; PFAM: class II aldolase/adducin, N-terminal; Short-chain dehydrogenase/reductase SDR YP_004315769.1 PFAM: RhaT l-rhamnose-proton symport 2; KEGG: dfe:Dfer_4532 rhamnose-proton symporter YP_004315770.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: btb:BMB171_C1960 acetyltransferase YP_004315771.1 PFAM: peptidase M16, C-terminal; peptidase M16, N-terminal; KEGG: gfo:GFO_3583 M16 family peptidase YP_004315772.1 KEGG: fba:FIC_01548 probable peptidase; PFAM: peptidase M16, C-terminal; peptidase M16, N-terminal YP_004315773.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: phe:Phep_3536 TonB-dependent receptor plug YP_004315774.1 KEGG: lif:LinJ18.1030 hypothetical protein YP_004315775.1 KEGG: sli:Slin_3350 SNF2-related protein; PFAM: SNF2-related; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004315776.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: cpi:Cpin_5629 short chain dehydrogenase YP_004315777.1 KEGG: dfe:Dfer_4627 YceI family protein; PFAM: lipid/polyisoprenoid-binding, YceI-like; SMART: lipid/polyisoprenoid-binding, YceI-like YP_004315778.1 PFAM: thioesterase; KEGG: phe:Phep_3511 thioesterase superfamily protein YP_004315779.1 KEGG: cpi:Cpin_1576 peptidase T2 asparaginase 2; PFAM: peptidase T2, asparaginase 2 YP_004315780.1 KEGG: dfe:Dfer_2044 transcriptional regulator, AsnC family; PFAM: transcription regulator AsnC-type, C-terminal; SMART: transcription regulator AsnC-type YP_004315781.1 PFAM: Drug/metabolite transporter; KEGG: bth:BT_1397 hypothetical protein YP_004315782.1 PFAM: DinB; KEGG: dfe:Dfer_1093 DinB family protein YP_004315783.1 KEGG: phe:Phep_2481 hypothetical protein; PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: metal-dependent phosphohydrolase, HD domain YP_004315784.1 TIGRFAM: polyphosphate kinase; KEGG: dfe:Dfer_2540 polyphosphate kinase; PFAM: polyphosphate kinase YP_004315785.1 KEGG: phe:Phep_2479 hypothetical protein YP_004315786.1 PFAM: metallo-dependent phosphatase; Bacterial surface antigen (D15); KEGG: sli:Slin_2814 hypothetical protein YP_004315787.1 PFAM: GAF; KEGG: dfe:Dfer_2542 hypothetical protein YP_004315788.1 KEGG: fbc:FB2170_04340 phosphoesterase, PA-phosphatase related protein; PFAM: phosphatidic acid phosphatase type 2/haloperoxidase; SMART: phosphatidic acid phosphatase type 2/haloperoxidase YP_004315790.1 PFAM: ABC transporter-like; ABC transporter transmembrane domain; KEGG: dfe:Dfer_1061 ABC transporter; SMART: ATPase, AAA+ type, core YP_004315791.1 KEGG: dfe:Dfer_3314 transcriptional regulator, GntR family with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR YP_004315792.1 KEGG: cpi:Cpin_2179 alkylhydroperoxidase like protein, AhpD family; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: carboxymuconolactone decarboxylase YP_004315793.1 PFAM: Alkyl hydroperoxide reductase subunit C/ thiol specific antioxidant; Redoxin; KEGG: dfe:Dfer_0285 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004315794.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: cpi:Cpin_4589 GCN5-related N-acetyltransferase YP_004315795.1 KEGG: cpi:Cpin_4590 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004315796.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: cpi:Cpin_6761 GCN5-related N-acetyltransferase YP_004315797.1 KEGG: dfe:Dfer_3514 hypothetical protein YP_004315798.1 TIGRFAM: leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; KEGG: phe:Phep_3538 leucyl-tRNA synthetase YP_004315799.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: phe:Phep_3544 protein of unknown function DUF214 YP_004315800.1 KEGG: phe:Phep_3545 hypothetical protein YP_004315801.1 TIGRFAM: bacitracin resistance protein BacA; HAMAP: bacitracin resistance protein BacA; KEGG: lby:Lbys_0061 undecaprenyl-diphosphatase; PFAM: bacitracin resistance protein BacA YP_004315802.1 TIGRFAM: tRNA pseudouridine synthase II, TruB; HAMAP: tRNA pseudouridine synthase II, TruB; KEGG: phe:Phep_3547 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II YP_004315803.1 SMART: riboflavin kinase; TIGRFAM: riboflavin kinase/FAD synthetase; KEGG: phe:Phep_3549 riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; riboflavin kinase YP_004315804.1 KEGG: ppr:PBPRB0521 hypothetical protein YP_004315805.1 KEGG: dfe:Dfer_4627 YceI family protein; PFAM: lipid/polyisoprenoid-binding, YceI-like; SMART: lipid/polyisoprenoid-binding, YceI-like YP_004315806.1 PFAM: peroxiredoxin, OsmC-like protein; KEGG: phe:Phep_0674 OsmC family protein YP_004315807.1 KEGG: chu:CHU_2639 cystathionine beta-lyase/cystathionine gamma-synthase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004315808.1 TIGRFAM: uroporphyrin-III C-methyltransferase, C-terminal; KEGG: phe:Phep_3091 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase YP_004315809.1 KEGG: phe:Phep_3749 transcriptional regulator, Rrf2 family; TIGRFAM: transcription regulator Rrf2; PFAM: transcription regulator Rrf2 YP_004315810.1 KEGG: phe:Phep_3553 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter-like YP_004315811.1 KEGG: phe:Phep_3554 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004315812.1 PFAM: protein of unknown function DUF2183; KEGG: phe:Phep_4163 hypothetical protein YP_004315813.1 KEGG: phe:Phep_4164 diacylglycerol kinase catalytic region; PFAM: diacylglycerol kinase, catalytic domain; SMART: diacylglycerol kinase, catalytic domain YP_004315814.1 PFAM: oxidoreductase, N-terminal; KEGG: dfe:Dfer_3162 oxidoreductase domain protein YP_004315815.1 KEGG: phe:Phep_3563 hypothetical protein YP_004315816.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: phe:Phep_3562 permease YjgP/YjgQ family protein YP_004315817.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA; riboflavin biosynthesis protein RibBA; KEGG: phe:Phep_3561 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA YP_004315818.1 KEGG: phe:Phep_3560 protein of unknown function DUF490 YP_004315819.1 PFAM: peptidase M22, glycoprotease; TIGRFAM: peptidase M22, O-sialoglycoprotein peptidase; peptidase M22, glycoprotease subgroup; HAMAP: peptidase M22, O-sialoglycoprotein peptidase; KEGG: phe:Phep_3559 metalloendopeptidase, glycoprotease YP_004315821.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA recombination and repair protein RecA; KEGG: phe:Phep_3557 RecA protein; HAMAP: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA YP_004315822.1 SMART: HhH-GPD domain; endonuclease III-like, iron-sulphur cluster loop motif; TIGRFAM: endonuclease III/Nth; KEGG: phe:Phep_3556 endonuclease III; PFAM: HhH-GPD domain; endonuclease III-like, iron-sulphur cluster loop motif YP_004315823.1 KEGG: phe:Phep_3555 hypothetical protein YP_004315824.1 PFAM: peptidase S8/S53, subtilisin/kexin/sedolisin; KEGG: phe:Phep_3748 peptidase S8/S53 subtilisin kexin sedolisin YP_004315825.1 PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; KEGG: cpi:Cpin_6488 Fmu (Sun) domain protein YP_004315826.1 KEGG: phe:Phep_2261 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004315827.1 HAMAP: uronate isomerase; KEGG: sli:Slin_1060 glucuronate isomerase; PFAM: uronate isomerase YP_004315828.1 TIGRFAM: Mannonate dehydratase; KEGG: phe:Phep_2262 mannonate dehydratase; PFAM: Mannonate dehydratase YP_004315829.1 KEGG: phe:Phep_2263 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004315830.1 PFAM: carbohydrate/purine kinase; KEGG: phe:Phep_2264 PfkB domain protein YP_004315831.1 PFAM: KDPG/KHG aldolase; KEGG: phe:Phep_2265 KDPG and KHG aldolase YP_004315832.1 PFAM: oxidoreductase, N-terminal; KEGG: cpi:Cpin_6533 oxidoreductase domain protein YP_004315833.1 KEGG: bth:BT_2892 hypothetical protein YP_004315834.1 PFAM: RagB/SusD; KEGG: fjo:Fjoh_2021 RagB/SusD domain-containing protein YP_004315835.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: fjo:Fjoh_2020 TonB-dependent receptor, plug YP_004315836.1 PFAM: Toxin-module SymE-like; KEGG: cpi:Cpin_4775 domain of unknown function DUF1813 HSP20 YP_004315837.1 KEGG: scl:sce2814 hypothetical protein YP_004315838.1 KEGG: phu:Phum_PHUM055490 cation efflux protein/ zinc transporter YP_004315839.1 KEGG: mmy:MSC_0534 hypothetical protein YP_004315840.1 KEGG: cpi:Cpin_1657 hypothetical protein YP_004315841.1 PFAM: ABC transporter-like; peptidase C39, bacteriocin processing; ABC transporter transmembrane domain; KEGG: zpr:ZPR_4399 probable bacteriocin/lantibiotic ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004315842.1 KEGG: bha:BH0475 hypothetical protein YP_004315843.1 PFAM: glycoside hydrolase, family 43; KEGG: phe:Phep_0507 glycoside hydrolase 43 YP_004315844.1 PFAM: glycoside hydrolase, family 43; KEGG: dfe:Dfer_4703 glycoside hydrolase 43 YP_004315845.1 KEGG: fjo:Fjoh_2026 aldose 1-epimerase; PFAM: aldose 1-epimerase YP_004315846.1 PFAM: glycoside hydrolase, family 2, carbohydrate-binding; glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; KEGG: lby:Lbys_2699 glycoside hydrolase 2 sugar binding protein YP_004315847.1 KEGG: dfe:Dfer_4704 hypothetical protein YP_004315848.1 PFAM: Domain of unknown function DUF1793; KEGG: sli:Slin_6191 hypothetical protein YP_004315849.1 PFAM: protein of unknown function DUF1680; KEGG: bfr:BF0334 hypothetical protein YP_004315850.1 KEGG: bfs:BF0290 hypothetical protein YP_004315851.1 PFAM: RagB/SusD; KEGG: bfr:BF0341 outer membrane protein YP_004315852.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: bfr:BF0340 hypothetical protein YP_004315853.1 KEGG: lby:Lbys_2883 glycoside hydrolase 29 (alpha-L-fucosidase); PFAM: glycoside hydrolase, family 29; SMART: glycoside hydrolase, family 29 YP_004315854.1 KEGG: aba:acid345_3466 hypothetical protein YP_004315855.1 KEGG: dfe:Dfer_1009 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004315856.1 KEGG: bcv:Bcav_2972 hypothetical protein YP_004315857.1 PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; KEGG: gct:GC56T3_1152 cobalamin synthesis protein P47K YP_004315858.1 KEGG: bth:BT_2908 hypothetical protein YP_004315859.1 TIGRFAM: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase; PFAM: carbohydrate kinase, FGGY, C-terminal; carbohydrate kinase, FGGY, N-terminal YP_004315860.1 KEGG: pdi:BDI_0104 fucose permease; TIGRFAM: L-fucose permease; PFAM: Major facilitator superfamily MFS-1 YP_004315861.1 PFAM: L-fucose isomerase-like, C-terminal; L-fucose isomerase, N-terminal-2; L-fucose isomerase, N-terminal-1; TIGRFAM: L-fucose isomerase; HAMAP: L-fucose isomerase; KEGG: bfr:BF0253 L-fucose isomerase YP_004315862.1 KEGG: dfe:Dfer_4533 hypothetical protein YP_004315863.1 KEGG: cpi:Cpin_1790 hypothetical protein YP_004315864.1 KEGG: bfs:BF4321 hypothetical protein YP_004315865.1 PFAM: RagB/SusD; KEGG: bfs:BF4322 outer membrane protein YP_004315866.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: bfs:BF4323 TonB-dependent outer membrane receptor protein YP_004315867.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: sli:Slin_0310 short-chain dehydrogenase/reductase SDR; SMART: polyketide synthase/Fatty acid synthase, KR YP_004315868.1 PFAM: Amidohydrolase 2; KEGG: cpi:Cpin_1992 amidohydrolase 2 YP_004315869.1 KEGG: phe:Phep_4017 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Fumarylacetoacetase, C-terminal-like YP_004315870.1 KEGG: phe:Phep_4018 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004315871.1 PFAM: D-galactarate dehydratase/altronate hydrolase, C-terminal; SAF domain; KEGG: lby:Lbys_1619 altronate dehydratase; SMART: SAF domain YP_004315872.1 PFAM: Rhamnose mutarotase; KEGG: cpi:Cpin_1991 protein of unknown function DUF718 YP_004315873.1 KEGG: cpi:Cpin_1994 L-fucose transporter; TIGRFAM: L-fucose permease; Bacterial glucose/galactose transporter; PFAM: Major facilitator superfamily MFS-1 YP_004315874.1 KEGG: phe:Phep_2939 helix-turn-helix-domain containing protein AraC type; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004315875.1 PFAM: xylose isomerase, TIM barrel domain; KEGG: dfe:Dfer_1232 xylose isomerase domain protein TIM barrel YP_004315876.1 KEGG: dfe:Dfer_4485 oxidoreductase YP_004315877.1 PFAM: oxidoreductase, N-terminal; KEGG: dfe:Dfer_4303 oxidoreductase domain protein YP_004315878.1 KEGG: dfe:Dfer_4304 protein of unknown function DUF1037 YP_004315879.1 KEGG: cpi:Cpin_7004 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004315880.1 KEGG: fbc:FB2170_09051 hypothetical protein YP_004315881.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_4183 RagB/SusD domain protein YP_004315882.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_4184 TonB-dependent receptor plug YP_004315883.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: lby:Lbys_2271 TonB-dependent receptor plug YP_004315884.1 PFAM: RagB/SusD; KEGG: lby:Lbys_2270 ragb/susd domain protein YP_004315885.1 KEGG: dfe:Dfer_1435 hypothetical protein; PFAM: glycoside hydrolase, family 65, central catalytic YP_004315886.1 PFAM: transposase, IS116/IS110/IS902; transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: fjo:Fjoh_2997 transposase IS116/IS110/IS902 family protein YP_004315887.1 PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; KEGG: phe:Phep_2234 oxidoreductase domain protein YP_004315888.1 KEGG: phe:Phep_0226 hypothetical protein YP_004315889.1 TIGRFAM: TonB, C-terminal; KEGG: phe:Phep_0189 hypothetical protein YP_004315890.1 KEGG: phe:Phep_0188 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004315892.1 KEGG: phe:Phep_0187 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A YP_004315893.1 PFAM: phospholipase/carboxylesterase; KEGG: dfe:Dfer_0355 phospholipase/carboxylesterase YP_004315894.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dfe:Dfer_0354 glyoxalase/bleomycin resistance protein/dioxygenase YP_004315895.1 KEGG: phe:Phep_2279 beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase, family 20, catalytic core; acetylhexosaminidase, subunit a/b YP_004315896.1 PFAM: TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_5762 hypothetical protein YP_004315897.1 KEGG: lbf:LBF_3059 hypothetical protein YP_004315898.1 KEGG: mlo:mlr6209 histidine decarboxylase; PFAM: pyridoxal phosphate-dependent decarboxylase YP_004315899.1 KEGG: dfe:Dfer_0204 transcriptional regulator, AsnC family; PFAM: transcription regulator AsnC-type, C-terminal; SMART: transcription regulator AsnC-type YP_004315900.1 KEGG: mfe:Mefer_0453 glycyl-tRNA synthetase YP_004315901.1 KEGG: zpr:ZPR_2215 hypothetical protein YP_004315902.1 KEGG: zpr:ZPR_2214 two-component system response regulator, LytR/AlgR family; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain YP_004315903.1 PFAM: Signal transduction histidine kinase, internal region; Tetratricopeptide TPR-1; ATPase-like, ATP-binding domain; KEGG: zpr:ZPR_2213 histidine kinase YP_004315904.1 KEGG: fbc:FB2170_13933 beta-hexosaminidase precursor; PFAM: glycoside hydrolase, family 20, catalytic core; acetylhexosaminidase, subunit a/b YP_004315905.1 KEGG: cpi:Cpin_5260 beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase, family 20, catalytic core; acetylhexosaminidase, subunit a/b YP_004315906.1 PFAM: Coagulation factor 5/8 type, C-terminal; KEGG: dfe:Dfer_2596 coagulation factor 5/8 type domain protein; SMART: glycoside hydrolase, family 29 YP_004315907.1 PFAM: Domain of unknown function DUF162; KEGG: phe:Phep_2948 protein of unknown function DUF162 YP_004315908.1 PFAM: Domain of unknown function DUF162; 4Fe-4S binding domain; KEGG: phe:Phep_2947 protein of unknown function DUF162 YP_004315909.1 PFAM: cysteine-rich domain; KEGG: phe:Phep_2946 protein of unknown function DUF224 cysteine-rich region domain protein YP_004315911.1 TIGRFAM: phospholipase C, phosphocholine-specific; KEGG: cpi:Cpin_1336 phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; phospholipase C, bacterial, C-terminal YP_004315912.1 PFAM: aldehyde dehydrogenase domain; KEGG: phe:Phep_1238 aldehyde dehydrogenase YP_004315913.1 PFAM: peptidase C26; KEGG: phe:Phep_1237 peptidase C26 YP_004315914.1 KEGG: pol:Bpro_4700 iron-containing alcohol dehydrogenase; PFAM: alcohol dehydrogenase, iron-type YP_004315915.1 KEGG: sli:Slin_5139 glutamate--ammonia ligase; PFAM: glutamine synthetase, catalytic domain YP_004315916.1 KEGG: plm:Plim_1782 ethanolamine transporter; TIGRFAM: ethanolamine permease; PFAM: Amino acid permease domain YP_004315917.1 PFAM: glutamine cyclotransferase; KEGG: phe:Phep_0278 glutamine cyclotransferase YP_004315918.1 TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: phe:Phep_0277 protein of unknown function UPF0102; PFAM: Uncharacterised protein family UPF0102 YP_004315919.1 KEGG: phe:Phep_0276 DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain YP_004315920.1 PFAM: Mechanosensitive ion channel MscS; KEGG: rbi:RB2501_10842 membrane transporter YP_004315921.1 TIGRFAM: peptidase M20D, amidohydrolase; KEGG: phe:Phep_0273 amidohydrolase; PFAM: peptidase M20; peptidase M20, dimerisation YP_004315922.1 PFAM: sporulation-related domain; KEGG: phe:Phep_0272 sporulation domain protein YP_004315923.1 SMART: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; Helicase, C-terminal; TIGRFAM: SecA protein; KEGG: phe:Phep_0271 preprotein translocase, Secsubunit alpha; HAMAP: SecA protein; PFAM: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; Helicase, C-terminal; SecA Wing/Scaffold; SEC-C motif YP_004315924.1 KEGG: dfe:Dfer_2856 glucose/sorbosone dehydrogenase-like protein YP_004315925.1 HAMAP: phosphoglucose isomerase (PGI); KEGG: phe:Phep_0280 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI) YP_004315926.1 KEGG: phe:Phep_3303 hypothetical protein YP_004315927.1 KEGG: phe:Phep_0282 hypothetical protein YP_004315928.1 KEGG: phe:Phep_0227 deoxycytidine triphosphate deaminase; TIGRFAM: deoxycytidine triphosphate deaminase YP_004315929.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: phe:Phep_0228 4'-phosphopantetheinyl transferase YP_004315930.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: phe:Phep_3096 TonB-dependent receptor YP_004315932.1 PFAM: transposase, IS4-like; KEGG: bvu:BVU_1595 transposase YP_004315933.1 KEGG: cpi:Cpin_3394 peptidase S41; PFAM: peptidase S41; SMART: peptidase S41 YP_004315934.1 KEGG: bfr:BF3417 hypothetical protein YP_004315935.1 KEGG: pyo:PY02835 hypothetical protein YP_004315936.1 KEGG: cgr:CAGL0F05841g hypothetical protein YP_004315937.1 PFAM: radical SAM; KEGG: bfs:BF3821 regulatory protein YP_004315938.1 KEGG: rbo:A1I_04960 cell surface antigen Sca4 YP_004315940.1 KEGG: sli:Slin_0896 hypothetical protein YP_004315942.1 KEGG: sli:Slin_0904 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain YP_004315943.1 PFAM: Signal transduction histidine kinase, internal region; ATPase-like, ATP-binding domain; KEGG: dfe:Dfer_5361 signal transduction histidine kinase, LytS YP_004315944.1 PFAM: Lantibiotic dehydratase, C-terminal; Lantibiotic dehydratase, N-terminal; KEGG: cpi:Cpin_3392 lantibiotic dehydratase domain protein YP_004315945.1 KEGG: sli:Slin_0889 hypothetical protein YP_004315946.1 PFAM: ABC transporter-like; peptidase C39, bacteriocin processing; ABC transporter transmembrane domain; KEGG: sli:Slin_0890 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004315947.1 KEGG: mmw:Mmwyl1_3062 filamentous haemagglutinin outer membrane protein YP_004315948.1 KEGG: ppa:PAS_chr1-1_0329 hypothetical protein YP_004315949.1 PFAM: Biotin/lipoate A/B protein ligase; TIGRFAM: Octanoyltransferase; HAMAP: Octanoyltransferase; KEGG: phe:Phep_0229 lipoate-protein ligase B YP_004315950.1 KEGG: phe:Phep_2107 hypothetical protein YP_004315951.1 KEGG: phe:Phep_0239 L-serine dehydratase; TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; PFAM: serine dehydratase-like, subunit alpha; serine dehydratase beta chain YP_004315952.1 KEGG: phe:Phep_0230 hypothetical protein YP_004315953.1 KEGG: phe:Phep_0231 hypothetical protein YP_004315954.1 PFAM: RDD; KEGG: phe:Phep_0232 RDD domain containing protein YP_004315955.1 PFAM: protein of unknown function DUF95, transmembrane; KEGG: phe:Phep_0233 protein of unknown function DUF95 transmembrane YP_004315956.1 PFAM: glycerophosphoryl diester phosphodiesterase, membrane domain; KEGG: phe:Phep_0234 hypothetical protein YP_004315957.1 KEGG: phe:Phep_0235 hypothetical protein YP_004315958.1 KEGG: phe:Phep_0236 hypothetical protein YP_004315959.1 KEGG: phe:Phep_0237 ATPase associated with various cellular activities AAA_3; PFAM: ATPase, AAA-3; SMART: ATPase, AAA+ type, core YP_004315960.1 PFAM: Domain of unknown function DUF58; KEGG: phe:Phep_0238 protein of unknown function DUF58 YP_004315961.1 KEGG: phe:Phep_3685 GH3 auxin-responsive promoter; manually curated; PFAM: GH3 auxin-responsive promoter YP_004315962.1 PFAM: ABC transporter-like; KEGG: phe:Phep_3684 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004315963.1 KEGG: phe:Phep_3683 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: phosphoesterase, RecJ-like; phosphoesterase, DHHA1 YP_004315964.1 KEGG: phe:Phep_3682 beta-lactamase; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004315965.1 KEGG: dfe:Dfer_1698 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004315966.1 KEGG: dfe:Dfer_1697 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; Tetratricopeptide TPR-1; SMART: ATPase-like, ATP-binding domain; Tetratricopeptide repeat YP_004315967.1 KEGG: lby:Lbys_1414 hypothetical protein YP_004315968.1 SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; TIGRFAM: excinuclease ABC subunit B; KEGG: phe:Phep_4036 excinuclease ABC subunit B; HAMAP: excinuclease ABC subunit B; PFAM: Helicase, C-terminal; Restriction endonuclease, type I, R subunit/type III, Res subunit; UvrB/UvrC protein YP_004315969.1 PFAM: phosphoribosyltransferase; KEGG: phe:Phep_4038 uracil phosphoribosyltransferase YP_004315970.1 KEGG: phe:Phep_4039 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004315971.1 PFAM: ROK; KEGG: cpi:Cpin_2424 ROK family protein YP_004315972.1 PFAM: glycosyl hydrolase, family 88; KEGG: phe:Phep_4097 glycosyl hydrolase 88 YP_004315973.1 KEGG: sli:Slin_3404 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004315974.1 KEGG: phe:Phep_2943 hypothetical protein YP_004315975.1 HAMAP: 5-keto 4-deoxyuronate isomerase; KEGG: phe:Phep_2944 5-keto-4-deoxyuronate isomerase; PFAM: KduI/IolB isomerase YP_004315976.1 KEGG: phe:Phep_2841 alpha-L-fucosidase; PFAM: glycoside hydrolase, family 29; SMART: glycoside hydrolase, family 29 YP_004315977.1 PFAM: glycosyl hydrolase, family 88; KEGG: lby:Lbys_0040 glycosyl hydrolase 88 YP_004315978.1 KEGG: cpi:Cpin_6824 transcriptional regulator, LacI family; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004315979.1 KEGG: phe:Phep_3600 hypothetical protein YP_004315980.1 PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; glucose-inhibited division protein A-related; KEGG: phe:Phep_3601 FAD dependent oxidoreductase YP_004315981.1 PFAM: LemA; KEGG: phe:Phep_3602 LemA family protein YP_004315982.1 PFAM: protein of unknown function DUF477; KEGG: phe:Phep_3603 protein of unknown function DUF477 YP_004315983.1 PFAM: protein of unknown function DUF477; KEGG: phe:Phep_3604 protein of unknown function DUF477 YP_004315984.1 KEGG: fgr:FG09850.1 hypothetical protein YP_004315985.1 KEGG: dfe:Dfer_3894 esterase/lipase-like protein YP_004315986.1 PFAM: Ureohydrolase; KEGG: phe:Phep_0263 arginase/agmatinase/formiminoglutamase YP_004315987.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: phe:Phep_0262 NAD-dependent epimerase/dehydratase YP_004315988.1 PFAM: Amino acid-binding ACT; KEGG: phe:Phep_0261 HAD-superfamily hydrolase, subfamily IB (PSPase-like) YP_004315989.1 PFAM: Alkyl hydroperoxide reductase subunit C/ thiol specific antioxidant; KEGG: sli:Slin_4777 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004315990.1 TIGRFAM: Branched-chain amino acid aminotransferase II; KEGG: phe:Phep_0259 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV YP_004315991.1 KEGG: phe:Phep_0258 hypothetical protein YP_004315992.1 KEGG: phe:Phep_0257 hypothetical protein YP_004315993.1 KEGG: dse:Dsec_GM13151 GM13151 gene product from transcript GM13151-RA YP_004315994.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: methylthiotransferase; tRNA-i(6)A37 modification enzyme MiaB; KEGG: phe:Phep_0249 (dimethylallyl)adenosine tRNA methylthiotransferase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; PFAM: methylthiotransferase, N-terminal; radical SAM; deoxyribonuclease/rho motif-related TRAM YP_004315995.1 KEGG: phe:Phep_0248 sigma-54 factor interaction domain-containing protein; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004315996.1 KEGG: phe:Phep_0247 hypothetical protein YP_004315997.1 KEGG: phe:Phep_0246 hypothetical protein YP_004315998.1 KEGG: phe:Phep_0245 preprotein translocase, SecG subunit; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit YP_004315999.1 HAMAP: chaperonin Cpn10; PFAM: chaperonin Cpn10; KEGG: lby:Lbys_1302 chaperonin cpn10; SMART: chaperonin Cpn10 YP_004316000.1 TIGRFAM: chaperonin Cpn60; HAMAP: chaperonin Cpn60; KEGG: phe:Phep_0243 chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1 YP_004316001.1 KEGG: phe:Phep_4234 hypothetical protein YP_004316002.1 KEGG: cpi:Cpin_0794 hypothetical protein YP_004316003.1 KEGG: phe:Phep_4236 hypothetical protein YP_004316004.1 PFAM: Uncharacterised protein family UPF0118; KEGG: phe:Phep_4237 protein of unknown function UPF0118 YP_004316005.1 KEGG: phe:Phep_4239 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core YP_004316006.1 KEGG: phe:Phep_2371 hypothetical protein YP_004316007.1 PFAM: YkuD domain; KEGG: phe:Phep_3187 ErfK/YbiS/YcfS/YnhG family protein YP_004316008.1 TIGRFAM: Gliding motility-associated lipoprotein, GldH; KEGG: phe:Phep_0077 hypothetical protein YP_004316009.1 KEGG: phe:Phep_0076 PSP1 domain protein; manually curated; PFAM: PSP1, C-terminal YP_004316010.1 KEGG: phe:Phep_0075 DNA polymerase III subunits gamma/tau YP_004316011.1 SMART: Resolvase, RNase H-like fold; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; KEGG: phe:Phep_0074 Holliday junction resolvase YqgF; HAMAP: Resolvase, holliday junction-type, YqgF-like; PFAM: Resolvase, holliday junction-type, YqgF-like YP_004316012.1 KEGG: phe:Phep_0073 O-methyltransferase 3; PFAM: O-methyltransferase, family 3 YP_004316013.1 KEGG: phe:Phep_0072 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; PFAM: peptidoglycan-binding lysin domain; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: peptidoglycan-binding Lysin subgroup; Lysozyme domain, subfamily 2 YP_004316014.1 KEGG: phe:Phep_0071 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; PFAM: mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; peptidoglycan-binding lysin domain; SMART: Lysozyme domain, subfamily 2; peptidoglycan-binding Lysin subgroup YP_004316016.1 KEGG: phe:Phep_0070 hypothetical protein YP_004316017.1 KEGG: phe:Phep_0068 hypothetical protein YP_004316018.1 KEGG: phe:Phep_4242 N-acetylmuramoyl-L-alanine amidase 2; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2 YP_004316019.1 PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase, class Ic; HAMAP: glutaminyl-tRNA synthetase, bacterial; KEGG: cpi:Cpin_0242 glutaminyl-tRNA synthetase YP_004316020.1 KEGG: phe:Phep_0530 cold-shock protein DNA-binding; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004316021.1 KEGG: cli:Clim_0544 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004316022.1 PFAM: peptidase M48; KEGG: bvu:BVU_3057 peptidase YP_004316023.1 PFAM: amidohydrolase; KEGG: phe:Phep_4175 amidohydrolase YP_004316024.1 PFAM: Amidohydrolase 1; KEGG: cpi:Cpin_1504 amidohydrolase YP_004316026.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sli:Slin_2439 glyoxalase/bleomycin resistance protein/dioxygenase YP_004316027.1 KEGG: pdi:BDI_1375 hypothetical protein YP_004316028.1 PFAM: Ferritin/Dps protein; KEGG: sli:Slin_4325 ferritin Dps family protein YP_004316029.1 KEGG: phe:Phep_2675 hypothetical protein YP_004316030.1 KEGG: bth:BT_1812 chaperone DnAJ; PFAM: chaperone DnaJ, C-terminal; heat shock protein DnaJ, N-terminal; SMART: heat shock protein DnaJ, N-terminal YP_004316031.1 KEGG: ctc:CTC01958 histidyl-tRNA synthetase YP_004316032.1 KEGG: sli:Slin_1050 beta-lactamase; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004316033.1 KEGG: sli:Slin_5366 hypothetical protein YP_004316034.1 PFAM: ABC transporter-like; KEGG: sli:Slin_5365 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004316036.1 KEGG: phe:Phep_4183 glycoside hydrolase 3 domain protein; PFAM: glycoside hydrolase, family 3, N-terminal YP_004316037.1 KEGG: phe:Phep_4183 glycoside hydrolase 3 domain protein; PFAM: glycoside hydrolase, family 3, N-terminal YP_004316038.1 PFAM: Uncharacterised protein family YphA; KEGG: sli:Slin_2336 DoxX family protein YP_004316039.1 KEGG: lby:Lbys_2519 hypothetical protein YP_004316040.1 PFAM: glycoside hydrolase, family 43; KEGG: lby:Lbys_2740 glycoside hydrolase 43 YP_004316041.1 PFAM: oxidoreductase, N-terminal; KEGG: cpi:Cpin_4672 oxidoreductase domain protein YP_004316042.1 PFAM: glycosyl hydrolase, family 88; KEGG: rcu:RCOM_1808230 hypothetical protein YP_004316043.1 PFAM: glycoside hydrolase, family 16; KEGG: cpi:Cpin_4126 glycoside hydrolase 16 YP_004316044.1 PFAM: KWG Leptospira; KEGG: zpr:ZPR_3173 KWG Leptospira YP_004316045.1 PFAM: KWG Leptospira; KEGG: csc:Csac_0643 hypothetical protein YP_004316046.1 PFAM: acyltransferase 3; KEGG: fjo:Fjoh_4804 acyltransferase 3 YP_004316047.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: dfe:Dfer_2405 endonuclease/exonuclease/phosphatase YP_004316048.1 PFAM: RagB/SusD; KEGG: lby:Lbys_2263 ragb/susd domain protein YP_004316049.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: lby:Lbys_2264 TonB-dependent receptor YP_004316050.1 PFAM: FecR protein; KEGG: zpr:ZPR_0389 FecR family protein YP_004316051.1 KEGG: fjo:Fjoh_1215 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004316052.1 KEGG: phe:Phep_2647 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004316053.1 PFAM: FecR protein; KEGG: cpi:Cpin_1889 anti-FecI sigma factor, FecR YP_004316054.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: phe:Phep_3497 TonB-dependent receptor plug YP_004316055.1 PFAM: RagB/SusD; KEGG: phe:Phep_3496 RagB/SusD domain protein YP_004316056.1 PFAM: metallo-dependent phosphatase; FG-GAP; KEGG: phe:Phep_2642 metallophosphoesterase YP_004316057.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: fjo:Fjoh_4884 GCN5-related N-acetyltransferase YP_004316058.1 PFAM: PepSY-associated TM helix; KEGG: dfe:Dfer_1313 propeptide PepSY amd peptidase M4 YP_004316059.1 KEGG: mxa:MXAN_0342 hypothetical protein YP_004316060.1 PFAM: ABC-type glycine betaine transporter, substrate-binding domain; KEGG: bvu:BVU_3272 glycine betaine-binding protein precursor YP_004316061.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: bvu:BVU_3271 glycine betaine/L-proline transport system permease YP_004316062.1 SMART: ATPase, AAA+ type, core; TIGRFAM: glycine betaine/L-proline transport ATP-binding subunit; KEGG: bth:BT_1751 glycine betaine transport ATP-binding protein; PFAM: ABC transporter-like; cystathionine beta-synthase, core YP_004316063.1 KEGG: dfe:Dfer_1797 hypothetical protein YP_004316064.1 KEGG: cpi:Cpin_5353 secreted protein YP_004316065.1 KEGG: fbc:FB2170_06590 alkylhydroperoxidase AhpD core; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: carboxymuconolactone decarboxylase YP_004316066.1 PFAM: Alkyl hydroperoxide reductase subunit C/ thiol specific antioxidant; KEGG: cpi:Cpin_3023 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004316067.1 PFAM: thioredoxin domain; KEGG: cpi:Cpin_6051 thioredoxin domain protein YP_004316068.1 KEGG: cpi:Cpin_5352 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316069.1 KEGG: cpi:Cpin_7158 alkylhydroperoxidase like protein, AhpD family; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: carboxymuconolactone decarboxylase YP_004316070.1 PFAM: acyl-CoA oxidase/dehydrogenase, type 1; acyl-CoA oxidase/dehydrogenase, central domain; KEGG: rbi:RB2501_14189 very long chain acyl-CoA dehydrogenase-related protein YP_004316071.1 KEGG: fjo:Fjoh_4826 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316072.1 KEGG: cpi:Cpin_4173 hypothetical protein YP_004316073.1 KEGG: dhd:Dhaf_3692 hypothetical protein YP_004316074.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: cpi:Cpin_4368 protein of unknown function DUF214 YP_004316075.1 KEGG: phe:Phep_1278 helix-turn-helix-domain containing protein AraC type; PFAM: Helix-turn-helix Mga, DNA-binding trans-acting positive regulator; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316076.1 PFAM: Monooxygenase, FAD-binding; KEGG: sli:Slin_2326 monooxygenase FAD-binding protein YP_004316077.1 PFAM: Helix-turn-helix, HxlR type; KEGG: cpi:Cpin_5668 HxlR family transcriptional regulator YP_004316078.1 KEGG: cpi:Cpin_5667 beta-lactamase; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004316079.1 PFAM: peptidase M28; KEGG: cpi:Cpin_5666 endoribonuclease L-PSP YP_004316080.1 PFAM: endoribonuclease L-PSP; KEGG: reu:Reut_C6129 endoribonuclease L-PSP YP_004316081.1 KEGG: sli:Slin_2097 hypothetical protein YP_004316082.1 PFAM: Sulfatase; KEGG: bth:BT_3488 arylsulfatase (aryl-sulfate sulphohydrolase) YP_004316083.1 PFAM: inosine/uridine-preferring nucleoside hydrolase domain; KEGG: dfe:Dfer_4323 inosine/uridine-preferring nucleoside hydrolase YP_004316084.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: psl:Psta_1030 endonuclease/exonuclease/phosphatase YP_004316085.1 PFAM: Uncharacterised conserved protein UCP016719; KEGG: sli:Slin_0923 hypothetical protein YP_004316086.1 PFAM: RagB/SusD; KEGG: cpi:Cpin_6659 RagB/SusD domain protein YP_004316087.1 KEGG: cpi:Cpin_6660 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SMART: Secretin/TonB, short N-terminal YP_004316088.1 PFAM: FecR protein; KEGG: phe:Phep_1382 FecR protein YP_004316089.1 KEGG: phe:Phep_1381 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004316090.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dfe:Dfer_2089 protein of unknown function DUF214 YP_004316091.1 KEGG: phe:Phep_3726 ATPase AAA YP_004316092.1 KEGG: phe:Phep_1304 helix-turn-helix-domain containing protein AraC type; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316093.1 KEGG: phe:Phep_1305 hypothetical protein YP_004316094.1 SMART: ATPase, AAA+ type, core; KEGG: pru:PRU_0213 hypothetical protein YP_004316095.1 PFAM: IstB-like ATP-binding protein; KEGG: zpr:ZPR_1312 probable insertion sequence ATP-binding protein, IS21 family YP_004316096.1 PFAM: Integrase, catalytic core; KEGG: zpr:ZPR_1311 transposase, IS21 family protein YP_004316099.1 PFAM: Signal transduction histidine kinase, internal region; KEGG: phe:Phep_2254 histidine kinase internal region YP_004316100.1 KEGG: dfe:Dfer_0733 two component transcriptional regulator, LytTR family; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain YP_004316101.1 PFAM: Integrase, catalytic core; Resolvase, helix-turn-helix domain; KEGG: sli:Slin_6980 integrase catalytic region YP_004316102.1 KEGG: sli:Slin_6979 IstB domain protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004316103.1 KEGG: cja:CJA_2867 TonB-dependent receptor protein YP_004316104.1 KEGG: oih:OB3467 hypothetical protein YP_004316105.1 KEGG: pyo:PY07180 hypothetical protein YP_004316106.1 KEGG: abu:Abu_1708 hypothetical protein YP_004316107.1 KEGG: cpi:Cpin_6641 hypothetical protein YP_004316108.1 KEGG: ctc:CTC01275 translation initiation factor IF-2 YP_004316109.1 PFAM: Alkyl hydroperoxide reductase subunit C/ thiol specific antioxidant; KEGG: cpi:Cpin_2112 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004316110.1 PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: dfe:Dfer_1784 bifunctional deaminase-reductase domain protein YP_004316111.1 KEGG: pfh:PFHG_03208 conserved hypothetical protein YP_004316112.1 KEGG: zpr:ZPR_1768 LexA DNA-binding protein YP_004316113.1 PFAM: methyltransferase type 12; KEGG: fbc:FB2170_01567 hypothetical protein YP_004316114.1 PFAM: nucleoside phosphorylase domain; KEGG: fjo:Fjoh_3241 nucleoside phosphorylase-like protein YP_004316115.1 KEGG: cph:Cpha266_0892 hypothetical protein YP_004316116.1 KEGG: cph:Cpha266_0891 hypothetical protein YP_004316117.1 KEGG: cpi:Cpin_2661 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain YP_004316118.1 PFAM: Signal transduction histidine kinase, internal region; KEGG: cpi:Cpin_2660 signal transduction histidine kinase, LytS YP_004316119.1 KEGG: bpy:Bphyt_5916 hypothetical protein YP_004316120.1 KEGG: swp:swp_4404 hypothetical protein YP_004316121.1 PFAM: phospholipase/carboxylesterase; KEGG: sli:Slin_1493 phospholipase/carboxylesterase YP_004316122.1 KEGG: cpi:Cpin_2898 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316123.1 KEGG: cpi:Cpin_2900 transmembrane protein YP_004316124.1 KEGG: msm:MSMEG_6755 isoflavone reductase YP_004316125.1 SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: fjo:Fjoh_1839 helix-turn-helix domain-containing protein YP_004316126.1 KEGG: lrl:LC705_01269 hypothetical protein YP_004316127.1 KEGG: pzu:PHZ_c2478 hypothetical protein YP_004316128.1 KEGG: fbc:FB2170_05580 peptidase YP_004316129.1 PFAM: Uncharacterised protein family YphA; KEGG: sli:Slin_5342 hypothetical protein YP_004316130.1 KEGG: cpi:Cpin_6124 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316131.1 KEGG: ptm:GSPATT00034455001 hypothetical protein YP_004316132.1 PFAM: Outer membrane efflux protein; KEGG: cpi:Cpin_1773 outer membrane efflux protein YP_004316133.1 PFAM: Secretion protein HlyD; KEGG: cpi:Cpin_1774 secretion protein HlyD YP_004316134.1 KEGG: cpi:Cpin_1775 hypothetical protein YP_004316136.1 KEGG: zpr:ZPR_1426 hypothetical protein YP_004316137.1 TIGRFAM: Secretion protein HlyD; KEGG: dfe:Dfer_0996 efflux transporter RND family, MFP subunit YP_004316138.1 KEGG: dfe:Dfer_0995 heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; Outer membrane efflux protein YP_004316139.1 KEGG: dfe:Dfer_0994 hypothetical protein YP_004316140.1 KEGG: pan:PODANSg4164 hypothetical protein YP_004316141.1 KEGG: phe:Phep_1416 protein of unknown function DUF1452 YP_004316142.1 PFAM: Helix-turn-helix, HxlR type; KEGG: cpi:Cpin_3532 HxlR family transcriptional regulator YP_004316143.1 PFAM: alpha/beta hydrolase fold-1; KEGG: cpi:Cpin_3533 esterase YP_004316144.1 KEGG: mxa:MXAN_2219 hypothetical protein YP_004316145.1 TIGRFAM: C-5 cytosine methyltransferase; KEGG: fps:FP2274 type II modification methyltransferase HpaII; PFAM: C-5 cytosine methyltransferase YP_004316146.1 PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: sli:Slin_2359 pirin domain protein YP_004316147.1 PFAM: ThiJ/PfpI; KEGG: ilo:IL2581 intracellular protease/amidase ThiJ/PfpL family YP_004316148.1 PFAM: Cyclic nucleotide-binding domain; KEGG: fjo:Fjoh_3997 cyclic nucleotide-binding protein YP_004316149.1 PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: cpi:Cpin_4632 bifunctional deaminase-reductase domain protein YP_004316150.1 PFAM: alpha/beta hydrolase fold-1; KEGG: bja:blr7068 hypothetical protein YP_004316152.1 PFAM: Uncharacterised protein family YphA; KEGG: fjo:Fjoh_3311 DoxX family protein YP_004316153.1 PFAM: ABC transporter-like; ABC transporter transmembrane domain; KEGG: dfe:Dfer_0068 ABC transporter; SMART: ATPase, AAA+ type, core YP_004316154.1 KEGG: zpr:ZPR_1560 AraC family transcriptional regulator protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316155.1 KEGG: cpi:Cpin_5405 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004316156.1 PFAM: acyltransferase 3; KEGG: pdi:BDI_3314 acyltransferase YP_004316157.1 PFAM: protein of unknown function DUF1801; KEGG: phe:Phep_3375 hypothetical protein YP_004316158.1 manually curated; PFAM: chorismate mutase, type II; KEGG: bth:BT_3934 phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutase; SMART: chorismate mutase YP_004316159.1 KEGG: chu:CHU_0736 hypothetical protein YP_004316160.1 KEGG: swp:swp_2963 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316161.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: swp:swp_2965 glyoxalase/bleomycin resistance protein/dioxygenase YP_004316162.1 PFAM: methyltransferase type 11; KEGG: cpi:Cpin_4081 methyltransferase type 11 YP_004316163.1 KEGG: cpi:Cpin_2240 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316164.1 KEGG: fjo:Fjoh_1840 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004316165.1 PFAM: protein of unknown function DUF1680; Bacterial Ig-related; KEGG: cpi:Cpin_4617 protein of unknown function DUF1680 YP_004316166.1 KEGG: mjl:Mjls_1348 hypothetical protein YP_004316167.1 PFAM: Domain of unknown function DUF1793; KEGG: cpi:Cpin_6639 hypothetical protein YP_004316168.1 KEGG: cpi:Cpin_6718 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004316169.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: phe:Phep_4224 lysine exporter protein (LysE/YggA) YP_004316170.1 KEGG: bfs:BF0723 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316171.1 KEGG: pdi:BDI_0085 hypothetical protein YP_004316172.1 PFAM: RagB/SusD; KEGG: pru:PRU_1676 lipoprotein YP_004316173.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: pdi:BDI_0087 hypothetical protein YP_004316174.1 PFAM: glycosidase, PH1107-related; KEGG: pdi:BDI_0059 hypothetical protein YP_004316175.1 KEGG: pdi:BDI_0058 cation symporter; TIGRFAM: Sodium:galactoside symporter; PFAM: Major facilitator superfamily MFS-1 YP_004316176.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: bfr:BF0849 N-acyl-D-glucosamine 2-epimerase YP_004316177.1 PFAM: endoglucanase H/glycosyl hydrolase 26; KEGG: fjo:Fjoh_4953 glycoside hydrolase YP_004316178.1 PFAM: activator of Hsp90 ATPase homologue 1-like; KEGG: phe:Phep_1256 activator of HSP90 ATPase 1 family protein YP_004316179.1 PFAM: Cyclic nucleotide-binding domain; KEGG: cpi:Cpin_4604 Crp/Fnr family transcriptional regulator YP_004316180.1 KEGG: cpi:Cpin_4605 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004316181.1 KEGG: dfe:Dfer_2436 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004316182.1 PFAM: FecR protein; KEGG: cpi:Cpin_2108 anti-FecI sigma factor, FecR YP_004316183.1 KEGG: bvu:BVU_1781 hypothetical protein; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SMART: Secretin/TonB, short N-terminal YP_004316184.1 PFAM: RagB/SusD; KEGG: bvu:BVU_1782 hypothetical protein YP_004316185.1 KEGG: rba:RB2377 arylsulfatase; PFAM: Sulfatase YP_004316186.1 PFAM: glycosyl hydrolase, family 88; KEGG: phe:Phep_0452 glycosyl hydrolase 88 YP_004316187.1 KEGG: cpi:Cpin_6177 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316188.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: cpi:Cpin_6178 aldo/keto reductase YP_004316189.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: pfl:PFL_3292 acetyltransferase YP_004316190.1 PFAM: DinB; KEGG: phe:Phep_0766 DinB family protein YP_004316191.1 KEGG: cpi:Cpin_4574 2-nitropropane dioxygenase NPD; PFAM: 2-nitropropane dioxygenase, NPD YP_004316192.1 KEGG: chu:CHU_3532 hypothetical protein YP_004316193.1 PFAM: transposase, IS4-like; KEGG: amr:AM1_5147 IS4 family transposase YP_004316194.1 KEGG: chu:CHU_3778 hypothetical protein YP_004316195.1 KEGG: der:Dere_GG12569 GG12569 gene product from transcript GG12569-RA YP_004316196.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dfe:Dfer_1509 major facilitator superfamily MFS_1 YP_004316197.1 TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, KEGG: rpf:Rpic12D_3751 methyltransferase YP_004316198.1 KEGG: cpi:Cpin_3571 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316199.1 KEGG: dfe:Dfer_2052 sulfatase; PFAM: Sulfatase YP_004316200.1 PFAM: NIPSNAP; KEGG: pzu:PHZ_c1312 hypothetical protein YP_004316201.1 KEGG: cpi:Cpin_4829 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004316202.1 PFAM: activator of Hsp90 ATPase homologue 1-like; KEGG: fjo:Fjoh_2828 activator of HSP90 ATPase 1 family protein YP_004316203.1 KEGG: cpi:Cpin_4831 hypothetical protein YP_004316204.1 PFAM: protein of unknown function DUF1801; KEGG: bbe:BBR47_47270 hypothetical protein YP_004316205.1 KEGG: lsp:Bsph_2538 hypothetical protein YP_004316206.1 manually curated; TIGRFAM: DNA mismatch endonuclease vsr; KEGG: fbc:FB2170_05415 very-short-patch-repair endonuclease; PFAM: DNA mismatch endonuclease vsr; Domain of unknown function DUF559 YP_004316207.1 KEGG: tgu:100227888 dynein, axonemal, heavy chain 1 YP_004316208.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: sli:Slin_0932 protein of unknown function DUF214 YP_004316209.1 PFAM: Signal transduction histidine kinase, internal region; KEGG: phe:Phep_2254 histidine kinase internal region YP_004316210.1 KEGG: sli:Slin_4710 two component transcriptional regulator, LytTR family; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain YP_004316211.1 KEGG: fjo:Fjoh_3249 alkaline phosphatase; PFAM: alkaline phosphatase; SMART: alkaline phosphatase YP_004316212.1 KEGG: cpi:Cpin_0968 hypothetical protein YP_004316213.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_1098 TonB-dependent receptor YP_004316214.1 PFAM: FecR protein; KEGG: cpi:Cpin_3122 anti-FecI sigma factor, FecR YP_004316215.1 KEGG: cpi:Cpin_3452 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004316216.1 PFAM: Helix-turn-helix, HxlR type; KEGG: cpi:Cpin_4987 HxlR family transcriptional regulator YP_004316217.1 KEGG: cpi:Cpin_4986 ribosyldihydronicotinamide dehydrogenase (quinone); PFAM: Flavodoxin-like fold YP_004316218.1 KEGG: lby:Lbys_0808 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004316219.1 PFAM: glycoside hydrolase, family 16; KEGG: sli:Slin_6434 glycoside hydrolase 16 YP_004316220.1 PFAM: Two component regulator propeller; KEGG: bth:BT_3465 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') YP_004316221.1 KEGG: phe:Phep_0525 SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter YP_004316222.1 KEGG: phe:Phep_0524 hypothetical protein YP_004316223.1 PFAM: pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; TIGRFAM: pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; HAMAP: pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: phe:Phep_0523 4-hydroxythreonine-4-phosphate dehydrogenase YP_004316224.1 KEGG: phe:Phep_0522 dihydrodipicolinate synthetase; PFAM: dihydrodipicolinate synthetase YP_004316225.1 KEGG: phe:Phep_0521 iron-containing alcohol dehydrogenase; PFAM: alcohol dehydrogenase, iron-type YP_004316226.1 KEGG: phe:Phep_2813 helix-turn-helix-domain containing protein AraC type; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316227.1 KEGG: dfe:Dfer_0328 protein of unknown function DUF500 YP_004316228.1 KEGG: phe:Phep_2664 hypothetical protein YP_004316229.1 KEGG: dfe:Dfer_4274 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase YP_004316230.1 KEGG: dfe:Dfer_4273 hydroxyproline-2-epimerase; PFAM: Proline racemase YP_004316231.1 KEGG: dfe:Dfer_4272 aldehyde dehydrogenase; PFAM: aldehyde dehydrogenase domain YP_004316232.1 KEGG: lby:Lbys_1774 dihydrodipicolinate synthetase; HAMAP: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_004316233.1 KEGG: lby:Lbys_0216 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316234.1 PFAM: peptidase M24, structural domain; peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; KEGG: dfe:Dfer_1440 Xaa-Pro dipeptidase YP_004316235.1 KEGG: dfe:Dfer_3655 peptidase S9B dipeptidylpeptidase IV domain protein; PFAM: peptidase S9B, dipeptidylpeptidase IV N-terminal; peptidase S9, prolyl oligopeptidase, catalytic domain YP_004316236.1 PFAM: peptidase M1, membrane alanine aminopeptidase, N-terminal; KEGG: phe:Phep_3712 peptidase M1 membrane alanine aminopeptidase YP_004316237.1 PFAM: protein of unknown function DUF885; KEGG: zpr:ZPR_4229 X-Pro dipeptidyl-peptidase YP_004316238.1 KEGG: cpi:Cpin_0406 hypothetical protein YP_004316239.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: cpi:Cpin_0405 TonB-dependent receptor plug YP_004316240.1 KEGG: phe:Phep_0303 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4 YP_004316241.1 PFAM: FecR protein; KEGG: phe:Phep_1501 FecR protein YP_004316242.1 PFAM: TonB-dependent receptor, plug; KEGG: bvu:BVU_0733 hypothetical protein YP_004316243.1 PFAM: RagB/SusD; KEGG: cpi:Cpin_0453 RagB/SusD domain protein YP_004316244.1 KEGG: sli:Slin_5713 peptidase S41; PFAM: peptidase S41; PDZ/DHR/GLGF; peptidase S9B, dipeptidylpeptidase IV N-terminal; WD40-like beta Propeller; SMART: PDZ/DHR/GLGF; peptidase S41 YP_004316245.1 PFAM: RagB/SusD; KEGG: cpi:Cpin_6565 RagB/SusD domain protein YP_004316246.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: bfr:BF1605 hypothetical protein YP_004316247.1 KEGG: rec:RHECIAT_PB0000351 hypothetical protein YP_004316248.1 KEGG: lby:Lbys_0109 glycoside hydrolase 43; PFAM: glycoside hydrolase, family 43; Coagulation factor 5/8 type, C-terminal; SMART: LamG-like jellyroll fold YP_004316249.1 PFAM: RagB/SusD; KEGG: zpr:ZPR_1380 hypothetical protein YP_004316250.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: bvu:BVU_1128 hypothetical protein YP_004316251.1 KEGG: zpr:ZPR_1683 hypothetical protein YP_004316252.1 KEGG: dfe:Dfer_0975 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004316253.1 KEGG: phe:Phep_2904 amino acid/peptide transporter; TIGRFAM: Amino acid/peptide transporter; PFAM: oligopeptide transporter YP_004316254.1 PFAM: RagB/SusD; KEGG: cpi:Cpin_1551 RagB/SusD domain protein YP_004316255.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: bfr:BF1605 hypothetical protein YP_004316257.1 KEGG: zpr:ZPR_1375 hypothetical protein YP_004316258.1 KEGG: cpi:Cpin_2638 acetyltransferase YP_004316259.1 KEGG: lby:Lbys_0215 peptidase s9b dipeptidylpeptidase IV domain protein YP_004316260.1 PFAM: Amino acid permease domain; KEGG: dfe:Dfer_4275 amino acid permease-associated region YP_004316261.1 PFAM: protein of unknown function DUF885; KEGG: dfe:Dfer_1442 protein of unknown function DUF885 YP_004316262.1 PFAM: FAD dependent oxidoreductase; KEGG: sli:Slin_0454 glucose-methanol-choline oxidoreductase YP_004316263.1 PFAM: glycoside hydrolase, family 97; KEGG: rmr:Rmar_0476 alpha-glucosidase, , adg97A YP_004316264.1 KEGG: phe:Phep_2727 aldose 1-epimerase; PFAM: aldose 1-epimerase YP_004316265.1 PFAM: glycoside hydrolase, family 43; KEGG: sde:Sde_0786 arabinan endo-1,5-alpha-L-arabinosidase YP_004316266.1 KEGG: lby:Lbys_2511 alpha-L-arabinofuranosidase domain protein; PFAM: alpha-L-arabinofuranosidase, C-terminal; SMART: alpha-L-arabinofuranosidase, C-terminal YP_004316267.1 KEGG: sli:Slin_1237 alpha-L-arabinofuranosidase domain protein; PFAM: alpha-L-arabinofuranosidase, C-terminal; SMART: alpha-L-arabinofuranosidase, C-terminal YP_004316268.1 PFAM: NUDIX hydrolase domain; KEGG: cpi:Cpin_3993 NUDIX hydrolase YP_004316269.1 PFAM: carbohydrate kinase, FGGY, C-terminal; carbohydrate kinase, FGGY, N-terminal; TIGRFAM: L-ribulokinase; HAMAP: L-ribulokinase; KEGG: phe:Phep_2729 ribulokinase YP_004316270.1 KEGG: phe:Phep_2730 L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin, N-terminal YP_004316271.1 HAMAP: L-arabinose isomerase; KEGG: phe:Phep_2731 L-arabinose isomerase; PFAM: L-arabinose isomerase YP_004316272.1 KEGG: sli:Slin_3635 SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter YP_004316273.1 KEGG: phe:Phep_4210 hypothetical protein YP_004316274.1 TIGRFAM: argininosuccinate synthase; KEGG: phe:Phep_4209 argininosuccinate synthase; PFAM: argininosuccinate synthase YP_004316275.1 KEGG: phe:Phep_4208 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: semialdehyde dehydrogenase, NAD-binding; semialdehyde dehydrogenase, dimerisation domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, type 1; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase, type 1; SMART: semialdehyde dehydrogenase, NAD-binding YP_004316276.1 PFAM: 23S rRNA-associated protein; KEGG: fjo:Fjoh_1843 S23 ribosomal protein YP_004316277.1 KEGG: phe:Phep_4207 aminotransferase class-III; PFAM: Aminotransferase class-III YP_004316278.1 KEGG: phe:Phep_4206 N-acetylornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain YP_004316279.1 TIGRFAM: acetylglutamate kinase; KEGG: phe:Phep_4205 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_004316280.1 TIGRFAM: Pyrroline-5-carboxylate reductase; KEGG: phe:Phep_4204 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent YP_004316281.1 PFAM: peptidase M20; peptidase M20, dimerisation; KEGG: phe:Phep_4203 peptidase M20 YP_004316282.1 PFAM: Lyase 1, N-terminal; TIGRFAM: argininosuccinate lyase; HAMAP: argininosuccinate lyase; KEGG: phe:Phep_4202 argininosuccinate lyase YP_004316283.1 TIGRFAM: Uridylate kinase, bacteria; KEGG: phe:Phep_0115 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_004316284.1 KEGG: vpr:Vpar_1824 hypothetical protein YP_004316285.1 PFAM: methyltransferase type 11; KEGG: ana:alr1520 hypothetical protein YP_004316286.1 SMART: Elongator protein 3/MiaB/NifB; manually curated; KEGG: phe:Phep_0380 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM; HemN, C-terminal YP_004316287.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: phe:Phep_0379 short-chain dehydrogenase/reductase SDR YP_004316288.1 PFAM: 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal; KEGG: phe:Phep_3616 three-deoxy-D-manno-octulosonic-acid transferase domain protein YP_004316289.1 KEGG: phe:Phep_3614 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004316290.1 TIGRFAM: UDP-glucose 4-epimerase; KEGG: phe:Phep_3613 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_004316291.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: phe:Phep_3611 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004316292.1 PFAM: 23S rRNA-associated protein; KEGG: gur:Gura_3816 hypothetical protein YP_004316293.1 KEGG: phe:Phep_0098 hypothetical protein YP_004316294.1 PFAM: peptidase S54, rhomboid domain; KEGG: phe:Phep_0099 rhomboid family protein YP_004316295.1 KEGG: chu:CHU_2459 hypothetical protein; PFAM: radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_004316296.1 PFAM: Domain of unknown function DUF162; KEGG: phe:Phep_0029 protein of unknown function DUF162 YP_004316297.1 SMART: ATPase, AAA+ type, core; TIGRFAM: peptidase M41, FtsH; KEGG: phe:Phep_0030 ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase, AAA-type, core; peptidase M41, FtsH extracellular YP_004316298.1 KEGG: phe:Phep_0031 iojap-like protein; TIGRFAM: ribosome-associated, Iojap-like; PFAM: ribosome-associated, Iojap-like YP_004316299.1 KEGG: phe:Phep_0032 biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase YP_004316300.1 KEGG: phe:Phep_2256 hypothetical protein YP_004316301.1 KEGG: phe:Phep_2255 cytochrome C biogenesis protein transmembrane region; PFAM: cytochrome C assembly protein, transmembrane domain YP_004316302.1 PFAM: phosphofructokinase domain; TIGRFAM: 6-phosphofructokinase; HAMAP: phosphofructokinase; KEGG: phe:Phep_0033 6-phosphofructokinase YP_004316303.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dfe:Dfer_0142 LysR family transcriptional regulator YP_004316304.1 PFAM: peptide methionine sulphoxide reductase MsrA; TIGRFAM: peptide methionine sulphoxide reductase MsrA; HAMAP: peptide methionine sulphoxide reductase MsrA; KEGG: cpi:Cpin_6050 peptide methionine sulfoxide reductase YP_004316305.1 PFAM: alcohol dehydrogenase, C-terminal; alcohol dehydrogenase GroES-like; KEGG: ote:Oter_3807 alcohol dehydrogenase; SMART: polyketide synthase, enoylreductase YP_004316306.1 KEGG: chu:CHU_0108 superoxide dismutase, manganese; PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal YP_004316307.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: phe:Phep_4222 CMP/dCMP deaminase zinc-binding YP_004316308.1 KEGG: gbm:Gbem_3419 export-like chaperone CsaA; TIGRFAM: Secretion chaperone CsaA; PFAM: tRNA-binding domain YP_004316309.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: phe:Phep_3610 protein of unknown function DUF214 YP_004316310.1 PFAM: metallo-dependent phosphatase; KEGG: phe:Phep_0369 metallophosphoesterase YP_004316311.1 PFAM: ferrochelatase; TIGRFAM: ferrochelatase; HAMAP: ferrochelatase; KEGG: phe:Phep_3617 ferrochelatase YP_004316312.1 TIGRFAM: LytB protein; KEGG: phe:Phep_3618 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein YP_004316313.1 TIGRFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: phe:Phep_3655 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C YP_004316314.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: sli:Slin_4976 endonuclease/exonuclease/phosphatase YP_004316315.1 SMART: semialdehyde dehydrogenase, NAD-binding; TIGRFAM: aspartate-semialdehyde dehydrogenase, bacterial; KEGG: phe:Phep_3654 aspartate-semialdehyde dehydrogenase; PFAM: semialdehyde dehydrogenase, dimerisation domain; semialdehyde dehydrogenase, NAD-binding YP_004316316.1 KEGG: osa:4338554 Os05g0365300 YP_004316317.1 KEGG: pdi:BDI_3270 hypothetical protein YP_004316318.1 KEGG: phe:Phep_3643 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004316319.1 TIGRFAM: protein of unknown function DUF28; HAMAP: protein of unknown function DUF28; KEGG: phe:Phep_3642 protein of unknown function DUF28; PFAM: protein of unknown function DUF28 YP_004316320.1 KEGG: sli:Slin_4913 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_004316321.1 KEGG: phe:Phep_2434 membrane dipeptidase; PFAM: peptidase M19, renal dipeptidase YP_004316322.1 KEGG: phe:Phep_4161 SNF2-related protein; PFAM: SNF2-related; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004316323.1 KEGG: pdi:BDI_0665 beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase, family 20, catalytic core YP_004316324.1 KEGG: phe:Phep_4218 tRNA (guanine-N(7)-)-methyltransferase; HAMAP: tRNA (guanine-N-7) methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase YP_004316325.1 PFAM: peptidase M28; Protease-associated domain, PA; KEGG: sli:Slin_4736 peptidase M28 YP_004316326.1 SMART: Pseudouridine synthase/archaeosine transglycosylase; KEGG: phe:Phep_4225 PUA domain containing protein YP_004316327.1 KEGG: phe:Phep_4232 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004316328.1 KEGG: phe:Phep_4231 hypothetical protein YP_004316329.1 KEGG: sli:Slin_5605 hypothetical protein YP_004316330.1 PFAM: Lantibiotic dehydratase, C-terminal; Lantibiotic dehydratase, N-terminal; KEGG: sli:Slin_0903 lantibiotic dehydratase domain protein YP_004316331.1 PFAM: Signal transduction histidine kinase, internal region; KEGG: phe:Phep_2254 histidine kinase internal region YP_004316333.1 KEGG: phe:Phep_2253 LytTr DNA-binding region; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain YP_004316334.1 manually curated; KEGG: cpi:Cpin_6565 RagB/SusD domain protein YP_004316335.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: bvu:BVU_1847 hypothetical protein YP_004316336.1 PFAM: RagB/SusD; KEGG: lby:Lbys_0487 ragb/susd domain protein YP_004316337.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: lby:Lbys_0486 TonB-dependent receptor plug YP_004316338.1 KEGG: bfs:BF3423 hypothetical protein YP_004316340.1 KEGG: cpi:Cpin_0370 hypothetical protein YP_004316341.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: cpi:Cpin_0369 TonB-dependent receptor YP_004316342.1 KEGG: bpy:Bphyt_7050 DNA/RNA non-specific endonuclease YP_004316343.1 KEGG: dfe:Dfer_2720 hypothetical protein YP_004316344.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_2719 TonB-dependent receptor plug YP_004316346.1 PFAM: diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; HAMAP: diaminopimelate epimerase; KEGG: phe:Phep_0208 diaminopimelate epimerase YP_004316347.1 KEGG: chu:CHU_3523 RNA procession exonuclease YP_004316348.1 PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, N-terminal; DNA ligase, ATP-dependent, C-terminal; KEGG: chu:CHU_3524 ATP-dependent DNA ligase YP_004316349.1 KEGG: chu:CHU_3525 ATP-dependent helicase; PFAM: DEAD/H associated; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004316350.1 PFAM: metallo-dependent phosphatase; KEGG: chu:CHU_3526 ICC-like phosphoesterase YP_004316351.1 KEGG: phe:Phep_0416 hypothetical protein YP_004316352.1 KEGG: fba:FIC_01711 two-component hybrid sensor and regulator; PFAM: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain YP_004316353.1 KEGG: cpi:Cpin_5566 GAF sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain YP_004316354.1 KEGG: phe:Phep_4247 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004316355.1 PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; KEGG: phe:Phep_4246 protein-glutamate O-methyltransferase; SMART: MCP methyltransferase, CheR-type YP_004316356.1 KEGG: phe:Phep_0545 trans-hexaprenyltranstransferase; PFAM: polyprenyl synthetase YP_004316357.1 KEGG: fba:FIC_01446 membrane protein, TerC family; TIGRFAM: integral membrane protein TerC, riboswitch-linked; PFAM: integral membrane protein TerC YP_004316358.1 KEGG: phe:Phep_0121 NAD metabolism ATPase/kinase-like protein YP_004316359.1 KEGG: gfo:GFO_0929 hypothetical protein YP_004316360.1 KEGG: dfe:Dfer_0425 hypothetical protein YP_004316361.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; KEGG: phe:Phep_0124 carbamoyl phosphate synthase large subunit; PFAM: carbamoyl-phosphate synthetase, large subunit, ATP-binding; carbamoyl-phosphate synthase, large subunit, N-terminal; carbamoyl-phosphate synthetase, large subunit, oligomerisation YP_004316362.1 KEGG: cpi:Cpin_3339 transporter hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; RND efflux system, outer membrane lipoprotein, NodT; PFAM: Acriflavin resistance protein; Outer membrane efflux protein YP_004316363.1 KEGG: cpi:Cpin_3340 efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004316364.1 KEGG: bbo:BBOV_I003750 histone acetyltransferase YP_004316365.1 KEGG: phe:Phep_0125 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: ATPase, AAA+ type, core YP_004316366.1 TIGRFAM: ribonuclease E/G; KEGG: phe:Phep_0126 ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/ribonuclease E/G; ribosomal protein S1, RNA-binding domain YP_004316367.1 KEGG: phe:Phep_0127 hypothetical protein YP_004316368.1 KEGG: phe:Phep_0128 histone family protein DNA-binding protein; PFAM: histone-like bacterial DNA-binding protein; SMART: histone-like bacterial DNA-binding protein YP_004316369.1 TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD domain; endonuclease III-like, iron-sulphur cluster loop motif; KEGG: phe:Phep_0129 helix-hairpin-helix motif protein; SMART: HhH-GPD domain YP_004316370.1 KEGG: phe:Phep_0130 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_004316371.1 TIGRFAM: aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; KEGG: phe:Phep_4233 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain YP_004316372.1 KEGG: phe:Phep_3860 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: transketolase-like, pyrimidine-binding domain; transketolase, C-terminal; TIGRFAM: deoxyxylulose-5-phosphate synthase; HAMAP: deoxyxylulose-5-phosphate synthase; SMART: transketolase-like, pyrimidine-binding domain YP_004316373.1 PFAM: Prokaryotic chromosome segregation/condensation protein ScpA; KEGG: chu:CHU_3644 condensin subunit ScpA YP_004316374.1 KEGG: phe:Phep_3859 serine hydroxymethyltransferase; PFAM: serine hydroxymethyltransferase YP_004316376.1 KEGG: phe:Phep_3856 phosphoribosyltransferase YP_004316377.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: ribosomal RNA large subunit methyltransferase RlmN; KEGG: phe:Phep_3855 radical SAM enzyme, Cfr family; HAMAP: ribosomal RNA large subunit methyltransferase RlmN; PFAM: radical SAM YP_004316378.1 PFAM: Amidohydrolase 1; KEGG: phe:Phep_3845 amidohydrolase YP_004316379.1 KEGG: phe:Phep_3843 acylphosphatase; HAMAP: acylphosphatase; PFAM: acylphosphatase-like YP_004316380.1 PFAM: polysaccharide biosynthesis protein; KEGG: phe:Phep_3842 polysaccharide biosynthesis protein YP_004316381.1 PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: dfe:Dfer_3772 hypothetical protein YP_004316382.1 KEGG: phe:Phep_3839 hypothetical protein YP_004316383.1 PFAM: peptidase M23; KEGG: phe:Phep_3838 peptidase M23 YP_004316384.1 KEGG: phe:Phep_3836 twin-arginine translocation protein, TatA/E family subunit; TIGRFAM: Twin-arginine translocation protein TatA/E; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106 YP_004316385.1 KEGG: phe:Phep_3834 lytic transglycosylase catalytic; PFAM: lytic transglycosylase-like, catalytic; peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding Lysin subgroup YP_004316386.1 PFAM: phosphoribosyltransferase; KEGG: phe:Phep_3621 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase YP_004316387.1 PFAM: NLP/P60; KEGG: phe:Phep_0170 NLP/P60 protein YP_004316388.1 TIGRFAM: pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha, subgroup y; KEGG: phe:Phep_0171 pyruvate dehydrogenase (acetyl-transferring) E1 component, subunit alpha; PFAM: dehydrogenase, E1 component YP_004316389.1 TIGRFAM: dihydrolipoamide acetyltransferase, long form; KEGG: phe:Phep_0172 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004316390.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; KEGG: phe:Phep_1357 type I phosphodiesterase/nucleotide pyrophosphatase YP_004316391.1 KEGG: phe:Phep_0090 thiamine pyrophosphokinase YP_004316392.1 PFAM: peptidase M28; KEGG: cpi:Cpin_1252 peptidase M28 YP_004316393.1 KEGG: phe:Phep_0095 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004316394.1 KEGG: phe:Phep_0096 hypothetical protein YP_004316395.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Thrombospondin, type 3-like repeat; KEGG: phe:Phep_0154 OmpA/MotB domain protein YP_004316396.1 KEGG: chu:CHU_3374 endoribonuclease L-PSP; TIGRFAM: YjgF-like protein; PFAM: endoribonuclease L-PSP YP_004316397.1 TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; Helicase, C-terminal; KEGG: phe:Phep_0158 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004316398.1 KEGG: phe:Phep_4167 GTP-binding proten HflX; TIGRFAM: GTP-binding protein, HflX; PFAM: GTP-binding protein, HSR1-related YP_004316399.1 TIGRFAM: ribosome-binding factor A; HAMAP: ribosome-binding factor A; KEGG: phe:Phep_4166 ribosome-binding factor A; PFAM: ribosome-binding factor A YP_004316400.1 TIGRFAM: leucyl/phenylalanyl-tRNA-protein transferase; KEGG: phe:Phep_4162 leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA-protein transferase YP_004316401.1 PFAM: Uncharacterised protein family UPF0126; KEGG: lbf:LBF_2554 hypothetical protein YP_004316402.1 PFAM: formylmethionine deformylase; TIGRFAM: formylmethionine deformylase; HAMAP: formylmethionine deformylase; KEGG: phe:Phep_0049 peptide deformylase YP_004316403.1 KEGG: phe:Phep_0050 peptidase M16 domain protein; PFAM: peptidase M16, N-terminal; peptidase M16, C-terminal YP_004316404.1 KEGG: phe:Phep_1397 hypothetical protein YP_004316405.1 KEGG: phe:Phep_1396 hypothetical protein YP_004316406.1 KEGG: bvu:BVU_1371 ribonuclease HII; PFAM: ribonuclease HII/HIII YP_004316407.1 PFAM: glycine cleavage T-protein, N-terminal; glycine cleavage T-protein, C-terminal barrel; TIGRFAM: glycine cleavage system T protein; HAMAP: aminomethyltransferase; KEGG: phe:Phep_0406 glycine cleavage system aminomethyltransferase T YP_004316408.1 KEGG: phe:Phep_0407 2-phosphosulfolactate phosphatase; HAMAP: 2-phosphosulpholactate phosphatase ComB; PFAM: 2-phosphosulpholactate phosphatase YP_004316409.1 KEGG: phe:Phep_0163 protein-tyrosine phosphatase, low molecular weight; PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight YP_004316410.1 KEGG: lby:Lbys_0501 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain YP_004316411.1 KEGG: lby:Lbys_0500 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core YP_004316412.1 TIGRFAM: Secretion protein HlyD; KEGG: gfo:GFO_0717 HlyD family secretion protein YP_004316413.1 PFAM: 23S rRNA-associated protein; KEGG: dly:Dehly_1438 30S ribosomal protein S23 YP_004316414.1 PFAM: ABC transporter-like; KEGG: rbi:RB2501_00521 ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004316415.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: cpi:Cpin_0957 protein of unknown function DUF214 YP_004316416.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: zpr:ZPR_4632 FtsX-related transmembrane transport protein YP_004316417.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dfe:Dfer_4857 protein of unknown function DUF214 YP_004316418.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: zpr:ZPR_4634 FtsX-related transmembrane transport protein YP_004316419.1 KEGG: sli:Slin_4644 hypothetical protein YP_004316420.1 PFAM: histidine phosphatase superfamily, clade-1; KEGG: app:CAP2UW1_1158 phosphoglycerate mutase YP_004316421.1 PFAM: cytochrome d ubiquinol oxidase subunit I; Herpesvirus glycoprotein H; KEGG: dfe:Dfer_5647 cytochrome bd ubiquinol oxidase subunit I YP_004316422.1 PFAM: cytochrome d ubiquinol oxidase subunit II; KEGG: phe:Phep_1394 cytochrome bd ubiquinol oxidase subunit II YP_004316423.1 KEGG: dfe:Dfer_4805 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004316424.1 KEGG: phe:Phep_0370 Mg-chelatase subunit ChlI YP_004316425.1 SMART: von Willebrand factor, type A; KEGG: phe:Phep_0371 von Willebrand factor type A YP_004316426.1 PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; KEGG: fjo:Fjoh_1166 oxidoreductase domain-containing protein YP_004316427.1 PFAM: [2Fe-2S]-binding; ferredoxin; KEGG: zpr:ZPR_2975 probable oxidoreductase YP_004316428.1 KEGG: zpr:ZPR_2974 aldehyde dehydrogenase; PFAM: aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding YP_004316429.1 PFAM: protein of unknown function DUF2132; KEGG: abo:ABO_2416 hypothetical protein YP_004316430.1 KEGG: cpi:Cpin_7152 6-phosphogluconate dehydrogenase NAD-binding; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004316431.1 PFAM: Major facilitator superfamily MFS-1; KEGG: phe:Phep_2461 major facilitator superfamily MFS_1 YP_004316432.1 PFAM: Aminotransferase, class V/cysteine desulfurase; KEGG: cat:CA2559_13338 hypothetical isopenicillin N epimerase YP_004316433.1 PFAM: KWG Leptospira; KEGG: clj:CLJU_c05090 hypothetical protein YP_004316434.1 PFAM: Bacterial surface antigen (D15); KEGG: phe:Phep_3971 hypothetical protein YP_004316435.1 PFAM: Helix-turn-helix type 3; KEGG: chu:CHU_2935 hypothetical protein YP_004316436.1 KEGG: phe:Phep_0592 hypothetical protein YP_004316437.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dfe:Dfer_4840 protein of unknown function DUF214 YP_004316438.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: sli:Slin_3774 protein of unknown function DUF214 YP_004316439.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: sli:Slin_4614 protein of unknown function DUF214 YP_004316440.1 KEGG: fbc:FB2170_06475 hypothetical protein YP_004316441.1 KEGG: fbc:FB2170_06480 ankyrin repeat-containing protein; PFAM: ankyrin repeat; SMART: ankyrin repeat YP_004316442.1 KEGG: fbc:FB2170_06485 probable serine/threonine kinase; PFAM: HTH transcriptional regulator, AraC; Tetratricopeptide TPR-1; SMART: Helix-turn-helix, AraC type, DNA binding domain; Tetratricopeptide repeat YP_004316443.1 KEGG: glo:Glov_0068 hypothetical protein YP_004316444.1 PFAM: PilT protein, N-terminal; KEGG: chd:Calhy_0016 twitching mobility protein PilT YP_004316445.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: fjo:Fjoh_3298 GCN5-related N-acetyltransferase YP_004316446.1 KEGG: chy:CHY_2535 hypothetical protein; manually curated; PFAM: protein of unknown function DUF86 YP_004316447.1 PFAM: nucleotidyl transferase domain; KEGG: dfe:Dfer_3213 DNA polymerase beta domain protein region YP_004316448.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: sli:Slin_4607 protein of unknown function DUF214 YP_004316449.1 KEGG: sli:Slin_4593 protein of unknown function DUF214; manually curated; PFAM: Domain of unknown function DUF214, ABC transporter permease YP_004316450.1 KEGG: pdi:BDI_0518 hypothetical protein YP_004316451.1 KEGG: cpi:Cpin_0596 SNF2-related protein; PFAM: SNF2-related; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004316452.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: zpr:ZPR_4636 transporter permease YP_004316453.1 KEGG: sli:Slin_4610 protein of unknown function DUF214 YP_004316454.1 KEGG: bth:BT_4753 hypothetical protein YP_004316455.1 KEGG: zpr:ZPR_1524 nucleotidyltransferase substrate binding subunit YP_004316456.1 PFAM: PhnA protein, C-terminal; KEGG: phe:Phep_2128 PhnA protein YP_004316457.1 KEGG: lch:Lcho_1308 fibronectin type III domain-containing protein; PFAM: Fibronectin, type III; SMART: Fibronectin, type III YP_004316458.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: sli:Slin_0932 protein of unknown function DUF214 YP_004316459.1 KEGG: lbf:LBF_3229 Na+-driven multidrug efflux pump; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein YP_004316460.1 KEGG: dfe:Dfer_1829 alcohol dehydrogenase zinc-binding domain protein; PFAM: alcohol dehydrogenase, C-terminal; alcohol dehydrogenase GroES-like; SMART: polyketide synthase, enoylreductase YP_004316461.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dfe:Dfer_4861 protein of unknown function DUF214 YP_004316462.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: sli:Slin_0932 protein of unknown function DUF214 YP_004316463.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: cpi:Cpin_0957 protein of unknown function DUF214 YP_004316464.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: sli:Slin_4615 protein of unknown function DUF214 YP_004316465.1 PFAM: ABC transporter-like; KEGG: zpr:ZPR_4644 ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004316466.1 PFAM: Sodium:dicarboxylate symporter; KEGG: rme:Rmet_4299 C4-dicarboxylate transporter DctA YP_004316467.1 PFAM: Outer membrane efflux protein; KEGG: zpr:ZPR_4645 outer membrane efflux protein YP_004316468.1 KEGG: phe:Phep_3664 protein of unknown function DUF147; TIGRFAM: Conserved hypothetical protein CHP00159; PFAM: DNA integrity scanning protein, DisA, N-terminal YP_004316469.1 PFAM: Uncharacterised protein family UPF0403; KEGG: phe:Phep_3669 protein of unknown function DUF1094 YP_004316470.1 PFAM: peptidase M56, BlaR1; KEGG: phe:Phep_1140 peptidase M56 BlaR1 YP_004316471.1 PFAM: Penicillinase repressor; KEGG: phe:Phep_1141 penicillinase repressor YP_004316472.1 KEGG: tcr:509529.40 trans-sialidase YP_004316473.1 PFAM: adenosylhomocysteinase; S-adenosyl-L-homocysteine hydrolase, NAD binding; TIGRFAM: adenosylhomocysteinase; HAMAP: adenosylhomocysteinase; KEGG: phe:Phep_3674 S-adenosyl-L-homocysteine hydrolase YP_004316474.1 KEGG: cpi:Cpin_7220 hypothetical protein YP_004316475.1 PFAM: pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; TIGRFAM: pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; HAMAP: pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; KEGG: phe:Phep_3677 pyridoxine 5'-phosphate synthase YP_004316476.1 SMART: nucleoside diphosphate kinase; HAMAP: nucleoside diphosphate kinase; KEGG: phe:Phep_0538 nucleoside-diphosphate kinase; PFAM: nucleoside diphosphate kinase YP_004316477.1 PFAM: phosphoesterase, RecJ-like; phosphoesterase, DHHA1; KEGG: phe:Phep_0539 phosphoesterase RecJ domain protein YP_004316478.1 PFAM: peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: phe:Phep_0540 peptidylprolyl isomerase FKBP-type YP_004316479.1 KEGG: phe:Phep_0541 hydrolase, TatD family; TIGRFAM: deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: deoxyribonuclease, TatD-related YP_004316480.1 SMART: asparaginase/glutaminase; TIGRFAM: L-asparaginase, type I; KEGG: phe:Phep_0542 L-asparaginase, type I; PFAM: asparaginase/glutaminase YP_004316481.1 KEGG: fba:FIC_01462 secreted peptidase, family S9; PFAM: peptidase S9A, oligopeptidase, N-terminal beta-propeller; peptidase S9, prolyl oligopeptidase, catalytic domain YP_004316482.1 KEGG: cpi:Cpin_0829 hypothetical protein YP_004316483.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: phe:Phep_0120 TonB-dependent receptor YP_004316484.1 KEGG: phe:Phep_3622 hypothetical protein YP_004316485.1 KEGG: phe:Phep_3623 RNA methyltransferase, TrmA family; TIGRFAM: 23S rRNA methyltransferase/RumA; PFAM: (uracil-5)-methyltransferase; deoxyribonuclease/rho motif-related TRAM YP_004316486.1 TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; KEGG: phe:Phep_2365 deoxyguanosinetriphosphate triphosphohydrolase; SMART: metal-dependent phosphohydrolase, HD domain YP_004316487.1 KEGG: dfe:Dfer_2671 alpha,alpha-trehalase; PFAM: glycoside hydrolase, family 37 YP_004316488.1 KEGG: rba:RB12740 gluconolactonase [precursor]; PFAM: SMP-30/gluconolaconase/LRE-like region YP_004316489.1 KEGG: fjo:Fjoh_4604 fatty acid desaturase; PFAM: Fatty acid desaturase, type 1 YP_004316490.1 SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: cpi:Cpin_5120 AraC family transcriptional regulator YP_004316491.1 PFAM: formylmethionine deformylase; TIGRFAM: formylmethionine deformylase; HAMAP: formylmethionine deformylase; KEGG: cpi:Cpin_5119 peptide deformylase YP_004316492.1 PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: sli:Slin_1368 lipid A biosynthesis acyltransferase YP_004316493.1 KEGG: ckr:CKR_2077 hypothetical protein; PFAM: AMP-dependent synthetase/ligase; phosphopantetheine-binding YP_004316494.1 KEGG: ajs:Ajs_3072 cytochrome P450; PFAM: cytochrome P450 YP_004316495.1 KEGG: aps:CFPG_049 hypothetical protein YP_004316496.1 KEGG: sli:Slin_6229 TonB-dependent receptor plug; manually curated; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel YP_004316497.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_1803 RagB/SusD domain protein YP_004316498.1 KEGG: cpi:Cpin_6653 alkaline phosphatase-like protein YP_004316499.1 KEGG: chu:CHU_0702 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316500.1 PFAM: carboxymuconolactone decarboxylase; KEGG: mpl:Mpal_2473 carboxymuconolactone decarboxylase YP_004316502.1 KEGG: hau:Haur_2487 lipoprotein signal peptide YP_004316503.1 PFAM: protein of unknown function DUF1486; KEGG: vap:Vapar_5626 protein of unknown function DUF1486 YP_004316504.1 PFAM: peptidase M23; KEGG: sal:Sala_1745 peptidase M23B YP_004316505.1 KEGG: tan:TA06955 Tpr-related protein family member YP_004316506.1 KEGG: ssa:SSA_0613 glucosyltransferase YP_004316507.1 KEGG: sli:Slin_4836 hypothetical protein YP_004316508.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: amr:AM1_6107 NAD-dependent epimerase/dehydratase YP_004316509.1 KEGG: chu:CHU_1097 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316510.1 KEGG: phe:Phep_1306 hypothetical protein YP_004316511.1 KEGG: sli:Slin_3971 hypothetical protein YP_004316512.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_4709 RagB/SusD domain protein YP_004316513.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: dfe:Dfer_4708 TonB-dependent receptor plug YP_004316514.1 PFAM: FecR protein; KEGG: cpi:Cpin_2882 anti-FecI sigma factor, FecR YP_004316515.1 KEGG: phe:Phep_1243 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2 YP_004316516.1 KEGG: sno:Snov_3035 ATP-dependent metalloprotease FtsH YP_004316517.1 PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting; KEGG: jan:Jann_2126 FAD-binding 9, siderophore-interacting YP_004316518.1 KEGG: chu:CHU_3597 hypothetical protein YP_004316519.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: dfe:Dfer_1200 GCN5-related N-acetyltransferase YP_004316520.1 KEGG: cpi:Cpin_0367 hypothetical protein YP_004316521.1 PFAM: esterase; KEGG: abu:Abu_0727 IroE protein YP_004316522.1 KEGG: gfo:GFO_2593 hypothetical protein YP_004316523.1 KEGG: fjo:Fjoh_1287 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316524.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: fjo:Fjoh_1286 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004316525.1 TIGRFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; HAMAP: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; KEGG: phe:Phep_0007 protein of unknown function UPF0054; PFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted YP_004316526.1 PFAM: peptidase, membrane zinc metallopeptidase, KEGG: phe:Phep_0016 peptidase membrane zinc metallopeptidase YP_004316527.1 PFAM: DNA recombination RmuC; KEGG: phe:Phep_0015 protein of unknown function DUF195 YP_004316528.1 TIGRFAM: thiamine-monophosphate kinase; KEGG: phe:Phep_0014 thiamine-monophosphate kinase; PFAM: AIR synthase-related protein; AIR synthase-related protein, C-terminal YP_004316529.1 PFAM: quinolinate synthetase A; TIGRFAM: quinolinate synthetase A; HAMAP: quinolinate synthase A, type 2; KEGG: phe:Phep_0013 quinolinate synthetase complex, subunit alpha YP_004316530.1 TIGRFAM: L-aspartate oxidase; KEGG: phe:Phep_0012 L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal YP_004316531.1 PFAM: Bacterial transferase hexapeptide repeat; KEGG: phe:Phep_0011 acetyltransferase/carbonic anhydrase YP_004316532.1 KEGG: phe:Phep_0010 hypothetical protein YP_004316533.1 TIGRFAM: glucose-inhibited division protein A; HAMAP: glucose-inhibited division protein A; KEGG: phe:Phep_0009 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: glucose-inhibited division protein A-related YP_004316534.1 KEGG: phe:Phep_0008 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004316535.1 PFAM: ApaG domain; KEGG: phe:Phep_0017 ApaG YP_004316536.1 KEGG: phe:Phep_0018 TIM-barrel protein, nifR3 family; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: tRNA-dihydrouridine synthase YP_004316537.1 PFAM: hypothetical protein; KEGG: phe:Phep_0019 abortive infection protein YP_004316538.1 PFAM: phosphatidate cytidylyltransferase; KEGG: phe:Phep_0020 phosphatidate cytidylyltransferase YP_004316539.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; anticodon-binding; TIGRFAM: histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: histidyl-tRNA synthetase, class IIa, subgroup; KEGG: phe:Phep_0173 histidyl-tRNA synthetase YP_004316540.1 KEGG: phe:Phep_1275 hypothetical protein YP_004316541.1 KEGG: phe:Phep_4176 regulatory protein AsnC/Lrp family; PFAM: transcription regulator AsnC-type, C-terminal; SMART: transcription regulator AsnC-type YP_004316542.1 PFAM: transketolase-like, pyrimidine-binding domain; transketolase, C-terminal; KEGG: phe:Phep_4178 transketolase central region; SMART: transketolase-like, pyrimidine-binding domain YP_004316543.1 KEGG: phe:Phep_4179 ATP-dependent nuclease subunit B YP_004316544.1 PFAM: DNA helicase, UvrD/REP type; KEGG: phe:Phep_4180 exodeoxyribonuclease V YP_004316545.1 KEGG: lby:Lbys_3546 hypothetical protein YP_004316546.1 KEGG: phe:Phep_0024 hypothetical protein YP_004316547.1 PFAM: protein of unknown function DUF187; Fibronectin, type III; KEGG: phe:Phep_4145 protein of unknown function DUF187 YP_004316548.1 KEGG: phe:Phep_4146 hypothetical protein YP_004316549.1 KEGG: phe:Phep_4147 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004316550.1 SMART: polyketide synthase, acyl transferase domain; TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; KEGG: phe:Phep_4148 malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase YP_004316551.1 PFAM: GTP cyclohydrolase I/nitrile oxidoreductase; TIGRFAM: GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; KEGG: phe:Phep_4149 GTP cyclohydrolase I YP_004316552.1 PFAM: 6-pyruvoyl tetrahydropterin synthase-related; KEGG: phe:Phep_4150 6-pyruvoyl tetrahydropterin synthase and hypothetical protein YP_004316553.1 KEGG: phe:Phep_4151 purine or other phosphorylase 1; TIGRFAM: Futalosine nucleosidase; PFAM: nucleoside phosphorylase domain YP_004316554.1 KEGG: phe:Phep_4152 protein of unknown function DUF191 YP_004316555.1 PFAM: glycoside hydrolase 15-related; KEGG: phe:Phep_2230 glycoside hydrolase 15-related YP_004316556.1 TIGRFAM: Trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; KEGG: cpi:Cpin_4022 trehalose-phosphatase; PFAM: glycosyl transferase, family 20; Trehalose-phosphatase YP_004316558.1 TIGRFAM: ribosomal protein S16; HAMAP: ribosomal protein S16; KEGG: phe:Phep_0035 ribosomal protein S16; PFAM: ribosomal protein S16 YP_004316559.1 TIGRFAM: 16S rRNA processing protein RimM; HAMAP: 16S rRNA processing protein RimM; KEGG: phe:Phep_0036 16S rRNA processing protein RimM; PFAM: PRC-barrel YP_004316560.1 PFAM: tRNA (guanine-N1-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: phe:Phep_0037 tRNA (guanine-N1)-methyltransferase YP_004316561.1 TIGRFAM: ribosomal protein L19; HAMAP: ribosomal protein L19; KEGG: phe:Phep_0040 ribosomal protein L19; PFAM: ribosomal protein L19 YP_004316562.1 KEGG: fps:FP0050 hydrolase; PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: metal-dependent phosphohydrolase, HD domain YP_004316563.1 KEGG: psp:PSPPH_1580 hypothetical protein YP_004316564.1 KEGG: phe:Phep_0196 RNA methylase; PFAM: RNA methylase; THUMP YP_004316565.1 KEGG: phe:Phep_0197 hypothetical protein YP_004316566.1 KEGG: phe:Phep_0202 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004316567.1 KEGG: phe:Phep_0203 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004316568.1 KEGG: lby:Lbys_0670 hypothetical protein YP_004316569.1 KEGG: cpi:Cpin_3681 aldehyde dehydrogenase; PFAM: aldehyde dehydrogenase domain YP_004316570.1 PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; Tetratricopeptide TPR-3; KEGG: phe:Phep_4159 hypothetical protein YP_004316571.1 manually curated; KEGG: phe:Phep_4158 phosphosulfolactate synthase; PFAM: (2R)-phospho-3-sulpholactate synthase, ComA YP_004316572.1 KEGG: cpi:Cpin_1671 shikimate dehydrogenase substrate binding domain protein; PFAM: shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_004316573.1 TIGRFAM: Gliding motility-associated lipoprotein, GldD; KEGG: phe:Phep_4156 hypothetical protein YP_004316574.1 KEGG: phe:Phep_4155 beta-lactamase; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004316575.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: phe:Phep_4154 protein of unknown function DUF214 YP_004316576.1 TIGRFAM: transcription-repair coupling factor; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; transcription factor CarD; Helicase, C-terminal; transcription-repair-coupling factor domain; KEGG: phe:Phep_0022 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004316577.1 KEGG: cja:CJA_1327 hypothetical protein YP_004316578.1 PFAM: NADPH-dependent FMN reductase; KEGG: aas:Aasi_0533 hypothetical protein YP_004316579.1 KEGG: phe:Phep_0324 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02453; PFAM: Conserved hypothetical protein CHP02453 YP_004316580.1 KEGG: lby:Lbys_2944 sss sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter YP_004316581.1 KEGG: fba:FIC_01736 aldose 1-epimerase; PFAM: aldose 1-epimerase YP_004316582.1 PFAM: galactokinase galactose-binding domain; GHMP kinase; GHMP kinase, C-terminal; TIGRFAM: galactokinase; HAMAP: galactokinase, bacterial; KEGG: cpi:Cpin_1466 galactokinase YP_004316583.1 PFAM: transcription regulator PadR N-terminal-like; KEGG: phe:Phep_0467 transcriptional regulator PadR family protein YP_004316584.1 PFAM: Phage shock domain; KEGG: phe:Phep_0468 PspC domain protein YP_004316585.1 TIGRFAM: UDP-MurNAc-pentapeptide synthetase; KEGG: phe:Phep_0078 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D -alanyl ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal YP_004316586.1 KEGG: phe:Phep_0093 hypothetical protein YP_004316587.1 TIGRFAM: pyruvate kinase; KEGG: phe:Phep_4190 pyruvate kinase; PFAM: pyruvate kinase, barrel; pyruvate kinase, C-terminal-like YP_004316588.1 KEGG: phe:Phep_4191 hypothetical protein YP_004316589.1 TIGRFAM: acyl carrier protein (ACP); HAMAP: acyl carrier protein (ACP); KEGG: phe:Phep_4192 acyl carrier protein; PFAM: phosphopantetheine-binding YP_004316590.1 SMART: polyketide synthase, beta-ketoacyl synthase domain; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; KEGG: phe:Phep_4193 3-oxoacyl-(acyl-carrier-protein) synthase 2; PFAM: beta-ketoacyl synthase, N-terminal; beta-ketoacyl synthase, C-terminal YP_004316591.1 KEGG: phe:Phep_4194 ribonuclease III; PFAM: ribonuclease III; Double-stranded RNA-binding; TIGRFAM: ribonuclease III, bacterial; HAMAP: ribonuclease III, bacterial; SMART: ribonuclease III; Double-stranded RNA-binding YP_004316592.1 KEGG: phe:Phep_0184 ATPase AAA central domain protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_004316593.1 PFAM: Tetratricopeptide TPR-1; KEGG: nve:NEMVE_v1g242448 hypothetical protein YP_004316594.1 SMART: peptidase S41; PDZ/DHR/GLGF; TIGRFAM: peptidase S41A, C-terminal peptidase; KEGG: phe:Phep_0166 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF YP_004316595.1 PFAM: nitroreductase-like; KEGG: phe:Phep_1450 nitroreductase YP_004316596.1 KEGG: phe:Phep_0048 hypothetical protein YP_004316597.1 PFAM: NIF system FeS cluster assembly, NifU, C-terminal; KEGG: phe:Phep_0047 nitrogen-fixing NifU domain protein YP_004316598.1 PFAM: ATPase-like, ParA/MinD; Domain of unknown function DUF59; KEGG: phe:Phep_0046 protein of unknown function DUF59 YP_004316599.1 PFAM: glycosyl transferase, family 51; KEGG: phe:Phep_0045 glycosyl transferase 51 YP_004316600.1 TIGRFAM: Hypoxanthine phosphoribosyl transferase; KEGG: phe:Phep_0044 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_004316601.1 PFAM: phosphatidylserine decarboxylase-related; TIGRFAM: phosphatidylserine decarboxylase-related protein; HAMAP: phosphatidylserine decarboxylase-related protein; KEGG: phe:Phep_0043 phosphatidylserine decarboxylase YP_004316602.1 KEGG: phe:Phep_0192 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004316603.1 PFAM: Putitive phosphate transport regulator; KEGG: phe:Phep_0191 protein of unknown function DUF47 YP_004316604.1 PFAM: phosphate transporter; KEGG: phe:Phep_0190 phosphate transporter YP_004316605.1 KEGG: phe:Phep_0189 hypothetical protein YP_004316606.1 KEGG: phe:Phep_0188 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004316607.1 KEGG: kla:KLLA0A00242g hypothetical protein YP_004316608.1 KEGG: chu:CHU_0281 hypothetical protein YP_004316609.1 KEGG: phe:Phep_0025 protein of unknown function DUF34; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NGG1p interacting factor 3, NIF3 YP_004316610.1 PFAM: protein of unknown function DUF164; KEGG: phe:Phep_0026 protein of unknown function DUF164 YP_004316611.1 PFAM: Tetratricopeptide TPR-3; KEGG: phe:Phep_0027 tetratricopeptide TPR_2 repeat protein YP_004316612.1 TIGRFAM: peptidase M20B, tripeptide aminopeptidase; KEGG: phe:Phep_0101 peptidase T; PFAM: peptidase M20, dimerisation; peptidase M20 YP_004316613.1 TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: phe:Phep_3807 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_004316614.1 PFAM: NTP pyrophosphohydrolase MazG, catalytic core; KEGG: phe:Phep_3808 nucleotide pyrophosphohydrolase MazG YP_004316615.1 PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; KEGG: dfe:Dfer_2463 UBA/ThiF-type NAD/FAD binding protein YP_004316616.1 TIGRFAM: Thiazole biosynthesis ThiH; PFAM: Biotin/thiamin synthesis-associated protein; radical SAM; KEGG: dfe:Dfer_2462 thiazole biosynthesis protein ThiH; SMART: Biotin/thiamin synthesis-associated protein YP_004316617.1 KEGG: cpi:Cpin_0625 thiazole biosynthesis family protein; HAMAP: Thiazole biosynthesis; PFAM: Thiazole biosynthesis YP_004316618.1 TIGRFAM: thiamine monophosphate synthase; HAMAP: thiamine monophosphate synthase; KEGG: pmz:HMPREF0659_A5798 thiamine-phosphate diphosphorylase; PFAM: thiamine monophosphate synthase YP_004316619.1 PFAM: thiamine monophosphate synthase; KEGG: pmz:HMPREF0659_A5801 thiamine monophosphate synthase/TenI YP_004316620.1 TIGRFAM: thiamine biosynthesis protein ThiC; HAMAP: thiamine biosynthesis protein ThiC; KEGG: phe:Phep_2466 thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC YP_004316621.1 KEGG: cpi:Cpin_0620 thiamine biosynthesis protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: thiamineS YP_004316622.1 KEGG: cpi:Cpin_0801 hypothetical protein YP_004316623.1 TIGRFAM: exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: phe:Phep_4271 exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase YP_004316624.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: phe:Phep_4270 peptidyl-prolyl cis-trans isomerase cyclophilin type YP_004316625.1 KEGG: phe:Phep_0180 hypothetical protein YP_004316627.1 KEGG: msv:Mesil_1030 hypothetical protein YP_004316628.1 KEGG: phe:Phep_3284 hypothetical protein YP_004316629.1 KEGG: phe:Phep_4122 hypothetical protein YP_004316630.1 TIGRFAM: peptidase S41A, C-terminal peptidase; PFAM: peptidase S41; PDZ/DHR/GLGF; KEGG: phe:Phep_4121 carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF YP_004316631.1 KEGG: phe:Phep_0217 LytTr DNA-binding region; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain YP_004316632.1 PFAM: Signal transduction histidine kinase, internal region; KEGG: phe:Phep_0216 histidine kinase internal region YP_004316633.1 KEGG: pyo:PY03155 hypothetical protein YP_004316634.1 PFAM: Penicillinase repressor; KEGG: lby:Lbys_1196 transcriptional repressor, copy family YP_004316635.1 KEGG: phe:Phep_0213 TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: peptidase M56, BlaR1; TonB, C-terminal YP_004316636.1 KEGG: phe:Phep_0212 succinate dehydrogenase/fumarate reductase iron-sulfur subunit YP_004316637.1 TIGRFAM: succinate dehydrogenase/fumarate reductase, flavoprotein subunit, low-GC Gram-positive bacteria; KEGG: chu:CHU_2473 succinate dehydrogenase flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal YP_004316638.1 TIGRFAM: succinate dehydrogenase, cytochrome b558 subunit; KEGG: lby:Lbys_2049 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family YP_004316639.1 SMART: PDZ/DHR/GLGF; TIGRFAM: peptidase S1C, Do; KEGG: phe:Phep_0209 protease Do; PFAM: peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF YP_004316640.1 KEGG: phe:Phep_4023 hypothetical protein YP_004316641.1 KEGG: phe:Phep_4024 hypothetical protein YP_004316642.1 PFAM: protein of unknown function DUF2480; KEGG: phe:Phep_4025 hypothetical protein YP_004316643.1 PFAM: peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: phe:Phep_4026 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004316644.1 PFAM: Lipopolysccharide assembly, LptC-related; KEGG: zpr:ZPR_0641 hypothetical protein YP_004316645.1 KEGG: phe:Phep_4028 hypothetical protein YP_004316646.1 KEGG: phe:Phep_4030 hypothetical protein YP_004316647.1 PFAM: metallo-dependent phosphatase; KEGG: phe:Phep_4032 metallophosphoesterase YP_004316648.1 KEGG: cpi:Cpin_2297 hypothetical protein YP_004316649.1 KEGG: cpi:Cpin_2298 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316650.1 HAMAP: Uncharacterised protein family UPF0176; PFAM: Rhodanese-like; KEGG: phe:Phep_3631 hypothetical protein; SMART: Rhodanese-like YP_004316651.1 KEGG: phe:Phep_3632 two component regulator three Y domain protein; PFAM: Two component regulator three Y; transcription regulator LuxR, C-terminal; SMART: transcription regulator LuxR, C-terminal YP_004316652.1 PFAM: TonB-dependent receptor, plug; KEGG: sli:Slin_6053 TonB-dependent receptor plug YP_004316653.1 PFAM: RagB/SusD; KEGG: sli:Slin_6054 RagB/SusD domain protein YP_004316654.1 PFAM: protein of unknown function DUF2329; KEGG: cpi:Cpin_6279 hypothetical protein YP_004316655.1 PFAM: Coagulation factor 5/8 type, C-terminal; glycoside hydrolase, family 43; Fibronectin, type III; KEGG: bfs:BF4166 xylosidase/arabinosidase YP_004316656.1 KEGG: phe:Phep_3638 glycoside hydrolase 3 domain protein; PFAM: glycoside hydrolase, family 3, N-terminal; glycoside hydrolase, family 3, C-terminal YP_004316657.1 KEGG: cpi:Cpin_5822 hypothetical protein YP_004316658.1 PFAM: Uncharacterised protein family YphA; KEGG: rmr:Rmar_0333 DoxX family protein YP_004316659.1 PFAM: peptidase S66, LD-carboxypeptidase A; KEGG: phe:Phep_0082 peptidase U61 LD-carboxypeptidase A YP_004316660.1 PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding domain; TIGRFAM: methionyl-tRNA synthetase, class Ia; methionyl-tRNA synthetase, class Ia subunit beta, C-terminal; HAMAP: methionyl-tRNA synthetase; KEGG: phe:Phep_0083 methionyl-tRNA synthetase YP_004316661.1 TIGRFAM: threonine synthase; KEGG: phe:Phep_3802 threonine synthase; PFAM: pyridoxal phosphate-dependent enzyme subunit beta YP_004316662.1 TIGRFAM: homoserine kinase; HAMAP: homoserine kinase; KEGG: phe:Phep_3803 homoserine kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal YP_004316663.1 TIGRFAM: aspartate kinase domain; KEGG: phe:Phep_3804 bifunctional aspartokinase I/homeserine dehydrogenase I; PFAM: homoserine dehydrogenase, catalytic; aspartate/glutamate/uridylate kinase; Amino acid-binding ACT; aspartate/homoserine dehydrogenase, NAD-binding YP_004316664.1 TIGRFAM: ribosome recycling factor; HAMAP: ribosome recycling factor, bacterial-like; KEGG: phe:Phep_0116 ribosome recycling factor; PFAM: ribosome recycling factor YP_004316665.1 KEGG: bth:BT_3110 hypothetical protein YP_004316666.1 KEGG: fjo:Fjoh_3505 hypothetical protein YP_004316667.1 TIGRFAM: ribosome biogenesis GTPase RsgA, HAMAP: ribosome biogenesis GTPase RsgA, KEGG: phe:Phep_3806 ribosome-associated GTPase; PFAM: ribosome biogenesis GTPase RsgA YP_004316668.1 TIGRFAM: glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; KEGG: phe:Phep_4251 glutamyl-tRNA synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_004316669.1 KEGG: phe:Phep_4252 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain YP_004316670.1 KEGG: phe:Phep_4253 hypothetical protein YP_004316671.1 KEGG: gfo:GFO_3326 glucose/galactose transporter; TIGRFAM: Bacterial glucose/galactose transporter; PFAM: Major facilitator superfamily MFS-1 YP_004316672.1 KEGG: bvu:BVU_2198 hypothetical protein YP_004316673.1 KEGG: phe:Phep_1389 hypothetical protein YP_004316674.1 TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; KEGG: phe:Phep_0067 signal recognition particle protein; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core YP_004316675.1 TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; KEGG: phe:Phep_0066 Mg chelatase, subunit ChlI; SMART: ATPase, AAA+ type, core YP_004316676.1 TIGRFAM: translation elongation factor EFTs/EF1B; HAMAP: translation elongation factor EFTs/EF1B; KEGG: phe:Phep_0113 translation elongation factor Ts; PFAM: translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal YP_004316677.1 KEGG: phe:Phep_0112 ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: ribosomal protein S2 YP_004316678.1 PFAM: ribosomal protein S9; KEGG: phe:Phep_0111 ribosomal protein S9 YP_004316679.1 KEGG: phe:Phep_0110 ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial-type; PFAM: ribosomal protein L13 YP_004316680.1 KEGG: dfe:Dfer_2515 MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein YP_004316681.1 SMART: peptide chain release factor; TIGRFAM: peptide chain release factor 1; KEGG: phe:Phep_4117 peptide chain release factor 1; HAMAP: peptide chain release factor 1; PFAM: peptide chain release factor class I/class II; peptide chain release factor YP_004316682.1 PFAM: Major facilitator superfamily MFS-1; KEGG: cpi:Cpin_4635 major facilitator superfamily MFS_1 YP_004316683.1 PFAM: metallo-dependent phosphatase; KEGG: phe:Phep_4118 metallophosphoesterase YP_004316684.1 KEGG: zpr:ZPR_4166 glycosyl hydrolase; PFAM: glycoside hydrolase, family 2, carbohydrate-binding YP_004316685.1 KEGG: phe:Phep_2458 prolyl oligopeptidase; PFAM: peptidase S9A, oligopeptidase, N-terminal beta-propeller; peptidase S9, prolyl oligopeptidase, catalytic domain YP_004316686.1 PFAM: GumN predicted; KEGG: sli:Slin_6313 GumN family protein YP_004316687.1 KEGG: pru:PRU_0167 exodeoxyribonuclease VII small subunit; HAMAP: exonuclease VII, small subunit; PFAM: exonuclease VII, small subunit YP_004316688.1 PFAM: exonuclease VII, large subunit, C-terminal; KEGG: pdi:BDI_2702 exodeoxyribonuclease VII large subunit YP_004316689.1 KEGG: phe:Phep_3629 hypothetical protein YP_004316690.1 KEGG: gfo:GFO_3147 hypothetical protein YP_004316691.1 TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; KEGG: phe:Phep_3628 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase, class I/classII YP_004316692.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain 1, bacterial; KEGG: phe:Phep_3627 phenylalanyl-tRNA synthetase, subunit alpha; PFAM: Phenylalanyl-tRNA synthetase YP_004316693.1 KEGG: phe:Phep_3626 hypothetical protein YP_004316694.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: phe:Phep_3625 regulatory protein TetR YP_004316695.1 PFAM: Sodium/solute symporter; KEGG: phe:Phep_1380 SSS sodium solute transporter superfamily YP_004316696.1 KEGG: phe:Phep_4257 hypothetical protein YP_004316697.1 PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: cpi:Cpin_5481 LmbE family protein YP_004316698.1 PFAM: Ham1-like protein; TIGRFAM: Ham1-like protein; HAMAP: nucleoside-triphosphatase; KEGG: bvu:BVU_1146 deoxyribonucleoside-triphosphatase YP_004316699.1 KEGG: phe:Phep_0491 hypothetical protein YP_004316700.1 KEGG: cpi:Cpin_3097 phosphoesterase PA-phosphatase related; PFAM: phosphatidic acid phosphatase type 2/haloperoxidase; SMART: phosphatidic acid phosphatase type 2/haloperoxidase YP_004316701.1 PFAM: transposase, IS116/IS110/IS902; transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: fjo:Fjoh_2997 transposase IS116/IS110/IS902 family protein YP_004316702.1 PFAM: peptidyl-prolyl cis-trans isomerase, PpiC-type; SurA N-terminal; KEGG: phe:Phep_0489 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004316703.1 KEGG: phe:Phep_0486 hypothetical protein YP_004316704.1 SMART: Cysteinyl-tRNA synthetase, class Ia, DALR; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; KEGG: phe:Phep_0485 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia; Cysteinyl-tRNA synthetase, class Ia, DALR YP_004316705.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: phe:Phep_0484 endonuclease/exonuclease/phosphatase YP_004316706.1 PFAM: peptidase S54, rhomboid domain; KEGG: phe:Phep_0483 rhomboid family protein YP_004316707.1 PFAM: peptidase S54, rhomboid domain; KEGG: phe:Phep_0482 rhomboid family protein YP_004316708.1 SMART: MutL, C-terminal, dimerisation; TIGRFAM: DNA mismatch repair protein, N-terminal; KEGG: phe:Phep_0481 DNA mismatch repair protein MutL; HAMAP: DNA mismatch repair protein, MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATPase-like, ATP-binding domain YP_004316709.1 KEGG: tjr:TherJR_2416 aromatic amino acid beta-eliminating lyase/threonine aldolase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase YP_004316711.1 KEGG: fjo:Fjoh_2115 hypothetical protein YP_004316712.1 PFAM: thioredoxin domain; KEGG: zpr:ZPR_2855 thioredoxin YP_004316713.1 KEGG: fps:FP1729 peroxiredoxin; PFAM: Alkyl hydroperoxide reductase subunit C/ thiol specific antioxidant; peroxiredoxin, C-terminal YP_004316714.1 PFAM: excinuclease ABC, C subunit, N-terminal; KEGG: zpr:ZPR_3498 protein containing GIY-YIG catalytic domain YP_004316715.1 KEGG: dfe:Dfer_5554 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004316716.1 SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: dfe:Dfer_5555 AraC family transcriptional regulator YP_004316717.1 KEGG: cpi:Cpin_5178 hypothetical protein YP_004316718.1 KEGG: dfe:Dfer_0982 efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004316719.1 KEGG: fjo:Fjoh_4408 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004316720.1 KEGG: cpi:Cpin_5181 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004316721.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; HAMAP: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: rbi:RB2501_14834 protein-L-isoaspartate O-methyltransferase YP_004316722.1 KEGG: lby:Lbys_1081 transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR YP_004316723.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: lby:Lbys_1078 gcn5-related N-acetyltransferase YP_004316724.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: lby:Lbys_1075 gcn5-related N-acetyltransferase YP_004316725.1 KEGG: lby:Lbys_1071 hypothetical protein YP_004316726.1 PFAM: protein of unknown function DUF1572; KEGG: lby:Lbys_1069 hypothetical protein YP_004316727.1 KEGG: pdi:BDI_1724 DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase YP_004316728.1 PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; KEGG: phe:Phep_4217 methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding YP_004316729.1 PFAM: Tetrapyrrole methylase; KEGG: phe:Phep_4199 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase YP_004316730.1 KEGG: tra:Trad_0541 endonuclease/exonuclease/phosphatase YP_004316731.1 PFAM: phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, N-domain; phosphoribosylglycinamide synthetase, C-domain; TIGRFAM: phosphoribosylglycinamide synthetase; HAMAP: phosphoribosylglycinamide synthetase; KEGG: phe:Phep_0267 phosphoribosylamine--glycine ligase YP_004316732.1 PFAM: Crotonase, core; KEGG: phe:Phep_0225 enoyl-CoA hydratase/isomerase YP_004316733.1 KEGG: phe:Phep_0224 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004316734.1 PFAM: Adaptor protein ClpS, core; KEGG: phe:Phep_0222 ATP-dependent Clp protease adaptor protein ClpS YP_004316735.1 KEGG: dfe:Dfer_4036 hypothetical protein YP_004316736.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: phe:Phep_0221 TonB-dependent receptor YP_004316737.1 KEGG: phe:Phep_4171 hypothetical protein YP_004316738.1 KEGG: phe:Phep_4170 anthranilate synthase; PFAM: chorismate binding, C-terminal; anthranilate synthase component I, N-terminal YP_004316739.1 TIGRFAM: anthranilate synthase, glutamine amidotransferase domain; KEGG: phe:Phep_4169 glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I, C-terminal YP_004316740.1 KEGG: phe:Phep_4168 indole-3-glycerol-phosphate synthase; PFAM: indole-3-glycerol phosphate synthase YP_004316741.1 TIGRFAM: glucosamine-6-phosphate isomerase; KEGG: zpr:ZPR_4699 glucosamine-6-phosphate deaminase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; N-acetylglucosaminyl phosphatidylinositol deacetylase YP_004316742.1 KEGG: phe:Phep_4267 hypothetical protein YP_004316743.1 KEGG: cpi:Cpin_0996 hypothetical protein YP_004316744.1 PFAM: Cytidylyltransferase; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; HAMAP: Probable nicotinate-nucleotide adenylyltransferase; KEGG: phe:Phep_4198 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_004316745.1 KEGG: phe:Phep_4197 guanylate kinase; PFAM: Guanylate kinase; TIGRFAM: Guanylate kinase, sub-group; HAMAP: Guanylate kinase, sub-group; SMART: Guanylate kinase/L-type calcium channel YP_004316746.1 KEGG: phe:Phep_4196 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: YicC-like, N-terminal; Domain of unknown function DUF1732 YP_004316747.1 KEGG: phe:Phep_4195 hypothetical protein YP_004316748.1 PFAM: peptidase M16, C-terminal; peptidase M16, N-terminal; KEGG: coc:Coch_0141 peptidase M16 domain protein YP_004316749.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Rickettsia 17kDa surface antigen; KEGG: phe:Phep_0181 OmpA/MotB domain protein YP_004316750.1 TIGRFAM: DNA polymerase 1; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; KEGG: phe:Phep_4214 DNA polymerase I; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; DNA-directed DNA polymerase, family A, palm domain YP_004316751.1 PFAM: MORN variant; KEGG: fnu:FN1512 phophatidylinositol-4-phosphate 5-kinase YP_004316752.1 KEGG: cpi:Cpin_2032 beta-lactamase; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004316753.1 PFAM: Uncharacterised protein family UPF0133; KEGG: phe:Phep_4212 hypothetical protein YP_004316754.1 PFAM: beta-lactamase-related; KEGG: phe:Phep_0159 beta-lactamase YP_004316755.1 PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal; TIGRFAM: fumarate hydratase, class II; HAMAP: fumarate hydratase, class II; KEGG: pmu:PM0823 fumarate hydratase YP_004316756.1 KEGG: phe:Phep_0161 hypothetical protein YP_004316757.1 PFAM: Bacterial surface antigen (D15); KEGG: phe:Phep_0286 hypothetical protein YP_004316758.1 KEGG: phe:Phep_0285 O-methyltransferase YP_004316759.1 KEGG: gfo:GFO_0830 hypothetical protein YP_004316760.1 PFAM: PilT protein, N-terminal; KEGG: sli:Slin_3128 twitching mobility protein PilT YP_004316761.1 PFAM: protein of unknown function DUF2191; KEGG: sli:Slin_3129 protein of unknown function DUF2191 YP_004316762.1 KEGG: cat:CA2559_12973 hypothetical protein YP_004316763.1 KEGG: lch:Lcho_4290 hypothetical protein YP_004316764.1 KEGG: phe:Phep_0284 hypothetical protein YP_004316765.1 KEGG: cpi:Cpin_5844 catalase; PFAM: catalase-related subgroup; catalase-related immune responsive YP_004316766.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: phe:Phep_4220 LysR substrate-binding YP_004316767.1 PFAM: ribonuclease BN-related; KEGG: sli:Slin_2372 ribonuclease BN YP_004316768.1 KEGG: phe:Phep_4284 alanine dehydrogenase/PNT domain protein; PFAM: alanine dehydrogenase/PNT, C-terminal; alanine dehydrogenase/PNT, N-terminal YP_004316769.1 KEGG: phe:Phep_4283 protein of unknown function UPF0079; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria YP_004316770.1 KEGG: phe:Phep_4282 PglZ domain protein; PFAM: PglZ domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004316771.1 KEGG: phe:Phep_4281 metal-dependent phosphohydrolase HD sub domain protein; PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: metal-dependent phosphohydrolase, HD domain YP_004316772.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; KEGG: cpi:Cpin_1280 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat YP_004316773.1 TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; HAMAP: UDP-3-O-acyl N-acetylglucosamine deacetylase; KEGG: phe:Phep_4279 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_004316774.1 TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: phe:Phep_4278 UDP-N-acetylglucosamine acyltransferase; PFAM: Bacterial transferase hexapeptide repeat YP_004316775.1 KEGG: phe:Phep_4277 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004316776.1 SMART: Elongation factor P, C-terminal; TIGRFAM: translation elongation factor P; KEGG: phe:Phep_4276 translation elongation factor P; HAMAP: translation elongation factor P; PFAM: Elongation factor P, C-terminal; translation elongation factor P/YeiP, central; translation elongation factor, KOW-like YP_004316777.1 KEGG: phe:Phep_4275 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase YP_004316778.1 PFAM: S1/P1 nuclease; KEGG: phe:Phep_0162 S1/P1 nuclease YP_004316779.1 PFAM: deoxyhypusine synthase; KEGG: phe:Phep_0287 deoxyhypusine synthase YP_004316780.1 PFAM: cytochrome C, class I; KEGG: phe:Phep_0288 cytochrome C class I YP_004316781.1 KEGG: phe:Phep_0289 iron-sulfur binding oxidoreductase YP_004316782.1 PFAM: polysulphide reductase, NrfD; KEGG: phe:Phep_0290 polysulphide reductase NrfD YP_004316783.1 KEGG: phe:Phep_0291 hypothetical protein YP_004316784.1 KEGG: phe:Phep_0292 hypothetical protein YP_004316785.1 KEGG: phe:Phep_0293 hypothetical protein YP_004316786.1 PFAM: cytochrome C oxidase subunit II C-terminal; cytochrome C oxidase subunit II, transmembrane domain; KEGG: phe:Phep_0294 cytochrome C oxidase subunit II YP_004316787.1 PFAM: cytochrome C oxidase subunit I; KEGG: phe:Phep_0295 cytochrome-c oxidase YP_004316788.1 PFAM: Heme A synthase/Protoheme IX farnesyltransferase; KEGG: phe:Phep_0296 cytochrome oxidase assembly YP_004316789.1 TIGRFAM: Protohaem IX farnesyltransferase; HAMAP: Protohaem IX farnesyltransferase; KEGG: phe:Phep_0297 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase YP_004316790.1 KEGG: phe:Phep_0298 cytochrome C oxidase subunit III YP_004316791.1 PFAM: cytochrome C oxidase subunit III; KEGG: phe:Phep_0299 cytochrome C oxidase subunit III YP_004316792.1 KEGG: phe:Phep_0300 hypothetical protein YP_004316793.1 KEGG: phe:Phep_0301 electron transporter SCO1/SenC YP_004316794.1 PFAM: protein of unknown function DUF420; KEGG: sli:Slin_5678 protein of unknown function DUF420 YP_004316795.1 KEGG: phe:Phep_0322 hypothetical protein YP_004316796.1 KEGG: phe:Phep_0323 hypothetical protein YP_004316797.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: phe:Phep_0325 OmpA/MotB domain protein YP_004316798.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; KEGG: phe:Phep_0361 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related YP_004316799.1 KEGG: phe:Phep_0362 hypothetical protein YP_004316800.1 KEGG: phe:Phep_0365 peptidase S9 prolyl oligopeptidase active site domain protein YP_004316801.1 KEGG: phe:Phep_0366 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004316802.1 KEGG: phe:Phep_0367 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004316803.1 TIGRFAM: transcription elongation factor GreA; HAMAP: transcription elongation factor greA; KEGG: phe:Phep_3810 transcription elongation factor GreA; PFAM: transcription elongation factor, GreA/GreB, N-terminal; transcription elongation factor, GreA/GreB, C-terminal YP_004316804.1 PFAM: histidine triad (HIT) protein; KEGG: phe:Phep_3809 histidine triad (HIT) protein YP_004316805.1 PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; HAMAP: Crossover junction endodeoxyribonuclease RuvC; KEGG: phe:Phep_0400 crossover junction endodeoxyribonuclease RuvC YP_004316806.1 KEGG: phe:Phep_0401 hypothetical protein YP_004316807.1 PFAM: glycosyl transferase, family 2; KEGG: phe:Phep_0402 glycosyl transferase 2 YP_004316808.1 KEGG: phe:Phep_0218 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004316809.1 PFAM: S-adenosylmethionine synthetase, C-terminal; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal; TIGRFAM: S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthetase; KEGG: cpi:Cpin_3691 S-adenosylmethionine synthetase YP_004316810.1 TIGRFAM: diacylglycerol/lipid kinase; PFAM: diacylglycerol kinase, catalytic domain; KEGG: phe:Phep_4093 diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase, catalytic domain YP_004316811.1 PFAM: translation initiation factor SUI1; KEGG: cpi:Cpin_0471 translation initiation factor SUI1 YP_004316812.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: phe:Phep_4090 MotA/TolQ/ExbB proton channel YP_004316813.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: fps:FP2209 hypothetical protein YP_004316814.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: fps:FP2208 biopolymer transport ExbD protein YP_004316815.1 KEGG: phe:Phep_2591 TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: TonB, C-terminal YP_004316816.1 KEGG: phe:Phep_4085 hypothetical protein YP_004316817.1 KEGG: fjo:Fjoh_0489 ABC-type phosphate transporter periplasmic component-like protein YP_004316818.1 PFAM: Tetratricopeptide TPR2; KEGG: fps:FP2205 hypothetical protein YP_004316819.1 KEGG: phe:Phep_4082 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; HAMAP: NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 YP_004316820.1 PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; TIGRFAM: NADH-ubiquinone oxidoreductase, 20 Kd subunit; HAMAP: NADH-ubiquinone oxidoreductase, 20 Kd subunit; KEGG: lby:Lbys_3221 NADH dehydrogenase subunit B YP_004316821.1 TIGRFAM: NADH dehydrogenase, subunit C; HAMAP: NADH dehydrogenase, subunit C; KEGG: phe:Phep_4080 NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit YP_004316822.1 HAMAP: NAD(P)H-quinone oxidoreductase subunit D/H; KEGG: phe:Phep_4079 NADH dehydrogenase (quinone); PFAM: NADH-quinone oxidoreductase, subunit D YP_004316823.1 TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: phe:Phep_4078 NADH-quinone oxidoreductase, E subunit; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit YP_004316824.1 SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; KEGG: phe:Phep_4077 NADH-quinone oxidoreductase, F subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YP_004316825.1 PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; KEGG: phe:Phep_4076 ferredoxin; SMART: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding YP_004316826.1 KEGG: phe:Phep_4075 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H YP_004316827.1 PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I; HAMAP: NADH-quinone oxidoreductase, chain I; KEGG: phe:Phep_4074 NADH-quinone oxidoreductase, chain I YP_004316828.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: phe:Phep_4073 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_004316829.1 KEGG: phe:Phep_4072 NADH-ubiquinone oxidoreductase chain 4L; HAMAP: NADH-ubiquinone oxidoreductase chain 4L/K; PFAM: NADH-ubiquinone oxidoreductase chain 4L/K YP_004316830.1 TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; KEGG: phe:Phep_4071 proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal YP_004316831.1 TIGRFAM: NADH-quinone oxidoreductase, chain M/4; KEGG: phe:Phep_4070 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004316832.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; TIGRFAM: NAD(P)H-quinone oxidoreductase, subunit N/subunit 2; HAMAP: NAD(P)H-quinone oxidoreductase, subunit N/subunit 2; KEGG: phe:Phep_4069 proton-translocating NADH-quinone oxidoreductase, chain N YP_004316833.1 KEGG: phe:Phep_4068 SNARE associated Golgi protein YP_004316834.1 HAMAP: inorganic pyrophosphatase; KEGG: phe:Phep_4067 inorganic diphosphatase; PFAM: inorganic pyrophosphatase YP_004316835.1 PFAM: Domain of unknown function DUF21; cystathionine beta-synthase, core; transporter-associated domain; KEGG: phe:Phep_4066 protein of unknown function DUF21 YP_004316836.1 KEGG: phe:Phep_4065 protein of unknown function DUF558; TIGRFAM: ribosomal RNA small subunit methyltransferase E; PFAM: ribosomal RNA small subunit methyltransferase E YP_004316837.1 KEGG: cpi:Cpin_1939 prephenate dehydrogenase; PFAM: prephenate dehydrogenase YP_004316838.1 KEGG: cpi:Cpin_1938 aminotransferase class I and II; PFAM: Aminotransferase, class I/classII YP_004316839.1 PFAM: ABC transporter-like; ABC transporter transmembrane domain; KEGG: dfe:Dfer_0316 ABC transporter; SMART: ATPase, AAA+ type, core YP_004316840.1 KEGG: phe:Phep_0141 translation initiation factor IF-2; TIGRFAM: translation initiation factor aIF-2, bacterial-like; Small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; translation initiation factor IF-2, N-terminal; translation elongation factor EFTu/EF1A, domain 2 YP_004316841.1 TIGRFAM: transcription termination factor NusA; PFAM: transcription factor NusA, N-terminal; ribosomal protein S1, RNA-binding domain; KEGG: phe:Phep_0140 transcription elongation factor NusA; SMART: RNA-binding domain, S1 YP_004316842.1 KEGG: phe:Phep_0139 protein of unknown function DUF150; HAMAP: ribosome maturation factor RimP; PFAM: ribosome maturation factor RimP YP_004316843.1 PFAM: membrane protein of unknown function; KEGG: phe:Phep_0137 membrane protein of unknown function YP_004316844.1 KEGG: fjo:Fjoh_2451 6-phosphogluconolactonase; PFAM: Lactonase, 7-bladed beta propeller YP_004316845.1 PFAM: glycosyl transferase, group 1; KEGG: phe:Phep_0496 glycosyl transferase group 1 YP_004316846.1 PFAM: beta-lactamase-related; KEGG: phe:Phep_2113 beta-lactamase YP_004316847.1 KEGG: phe:Phep_0493 hypothetical protein YP_004316848.1 PFAM: peptidase S46; KEGG: fjo:Fjoh_0416 hypothetical protein YP_004316849.1 PFAM: tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: dfe:Dfer_0552 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase YP_004316850.1 PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; KEGG: phe:Phep_3646 oxidoreductase domain protein YP_004316851.1 KEGG: phe:Phep_2049 hypothetical protein YP_004316852.1 SMART: Lysidine-tRNA(Ile) synthetase, C-terminal; TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; Lysidine-tRNA(Ile) synthetase, C-terminal; KEGG: phe:Phep_0494 tRNA(Ile)-lysidine synthetase; HAMAP: Lysidine-tRNA(Ile) synthetase; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase YP_004316853.1 KEGG: phe:Phep_0495 hypothetical protein YP_004316854.1 KEGG: phe:Phep_4034 hypothetical protein YP_004316855.1 PFAM: Uncharacterised protein family YfhO; KEGG: phe:Phep_4033 hypothetical protein YP_004316856.1 PFAM: glycosyl transferase, family 2; KEGG: phe:Phep_4048 glycosyl transferase 2 YP_004316857.1 KEGG: dfe:Dfer_3867 hypothetical protein YP_004316858.1 KEGG: phe:Phep_4043 sugar transferase YP_004316859.1 PFAM: glycosyl transferase, family 2; KEGG: cts:Ctha_2068 glycosyl transferase 2 YP_004316860.1 PFAM: polysaccharide biosynthesis protein; KEGG: sli:Slin_4270 hypothetical protein YP_004316861.1 KEGG: mmi:MMAR_1756 hypothetical protein YP_004316862.1 TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFG/EF2, C-terminal; KEGG: phe:Phep_4050 GTP-binding protein TypA; SMART: translation elongation factor EFG/EF2, C-terminal YP_004316863.1 TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; KEGG: phe:Phep_4060 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core YP_004316865.1 PFAM: Sulphatase-modifying factor; KEGG: phe:Phep_4062 protein of unknown function DUF323 YP_004316866.1 KEGG: phe:Phep_0132 hypothetical protein YP_004316867.1 KEGG: phe:Phep_0133 starch synthase; PFAM: Starch synthase, catalytic domain YP_004316868.1 TIGRFAM: Pantoate-beta-alanine ligase; HAMAP: Pantoate-beta-alanine ligase; KEGG: phe:Phep_0134 pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_004316869.1 PFAM: aspartate decarboxylase; TIGRFAM: aspartate decarboxylase; HAMAP: aspartate decarboxylase; KEGG: phe:Phep_0135 aspartate 1-decarboxylase YP_004316870.1 KEGG: fjo:Fjoh_3918 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004316871.1 KEGG: fjo:Fjoh_3919 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain YP_004316872.1 SMART: ATPase, AAA+ type, core; KEGG: chu:CHU_3653 helicase-related protein YP_004316873.1 KEGG: cpi:Cpin_1418 peptidase M1 membrane alanine aminopeptidase; PFAM: peptidase M1, membrane alanine aminopeptidase, N-terminal YP_004316874.1 PFAM: Redoxin; KEGG: cpi:Cpin_6285 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004316875.1 KEGG: phe:Phep_0136 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA oxidase/dehydrogenase, type 1; acyl-CoA dehydrogenase, N-terminal; acyl-CoA oxidase/dehydrogenase, central domain YP_004316876.1 PFAM: mannose-6-phosphate isomerase, type II, C-terminal; KEGG: phe:Phep_3485 hypothetical protein YP_004316877.1 KEGG: phe:Phep_3475 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain YP_004316878.1 TIGRFAM: formyltetrahydrofolate deformylase; KEGG: phe:Phep_3999 formyltetrahydrofolate deformylase; PFAM: formyl transferase, N-terminal; Amino acid-binding ACT YP_004316879.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: zpr:ZPR_4224 TonB-dependent receptor Plug domain protein YP_004316880.1 PFAM: RagB/SusD; KEGG: zpr:ZPR_4223 outer membrane protein probably involved in nutrient binding YP_004316881.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: phe:Phep_3006 aldo/keto reductase YP_004316882.1 PFAM: peptidase M28; KEGG: cpi:Cpin_0017 peptidase M28 YP_004316883.1 PFAM: transposase, IS116/IS110/IS902; transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: fjo:Fjoh_2997 transposase IS116/IS110/IS902 family protein YP_004316884.1 PFAM: transposase, IS116/IS110/IS902; KEGG: eck:EC55989_4650 transposase, IS110 family YP_004316886.1 PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; KEGG: phe:Phep_3470 DNA topoisomerase IV subunit A; SMART: DNA topoisomerase, type IIA, subunit A/C-terminal YP_004316887.1 PFAM: peptide methionine sulphoxide reductase MsrA; TIGRFAM: peptide methionine sulphoxide reductase MsrA; HAMAP: peptide methionine sulphoxide reductase MsrA; KEGG: amc:MADE_03638 peptide methionine sulfoxide reductase MsrA YP_004316888.1 KEGG: phe:Phep_3464 hypothetical protein YP_004316889.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: dfe:Dfer_4473 hypothetical protein YP_004316890.1 PFAM: glucose-methanol-choline oxidoreductase, N-terminal; FAD dependent oxidoreductase; KEGG: sli:Slin_0454 glucose-methanol-choline oxidoreductase YP_004316891.1 PFAM: xylose isomerase, TIM barrel domain; KEGG: pdi:BDI_1903 hypothetical protein YP_004316892.1 PFAM: oxidoreductase, N-terminal; KEGG: pdi:BDI_1902 dehydrogenase YP_004316893.1 PFAM: RagB/SusD; KEGG: pdi:BDI_1908 hypothetical protein YP_004316894.1 PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; KEGG: pdi:BDI_1907 hypothetical protein YP_004316895.1 PFAM: FecR protein; KEGG: cpi:Cpin_7235 anti-FecI sigma factor, FecR YP_004316896.1 KEGG: phe:Phep_3691 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004316897.1 KEGG: phe:Phep_1832 hypothetical protein YP_004316898.1 KEGG: phe:Phep_3463 SAM dependent methyltransferase YP_004316899.1 PFAM: ABC transporter-like; KEGG: phe:Phep_3462 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004316900.1 PFAM: Domain of unknown function DUF140; KEGG: phe:Phep_3461 protein of unknown function DUF140 YP_004316901.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: phe:Phep_3460 short-chain dehydrogenase/reductase SDR YP_004316902.1 PFAM: Phage shock domain; KEGG: tmt:Tmath_0846 phage shock protein C, PspC YP_004316903.1 KEGG: phe:Phep_3458 hypothetical protein YP_004316904.1 PFAM: RDD; KEGG: phe:Phep_3457 RDD domain containing protein YP_004316905.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dfe:Dfer_2022 transcriptional regulator, TetR family YP_004316906.1 PFAM: Outer membrane efflux protein; KEGG: dfe:Dfer_2021 outer membrane efflux protein YP_004316907.1 PFAM: Secretion protein HlyD; KEGG: cpi:Cpin_0558 secretion protein HlyD YP_004316908.1 KEGG: cpi:Cpin_0557 drug resistance transporter EmrB/QacA subfamily; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004316909.1 PFAM: transposase, IS4-like; KEGG: bvu:BVU_1595 transposase YP_004316910.1 KEGG: cpi:Cpin_6243 peptidylprolyl isomerase FKBP-type YP_004316911.1 PFAM: peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: phe:Phep_3720 peptidylprolyl isomerase FKBP-type YP_004316912.1 KEGG: fps:FP1014 deoxyribodipyrimidine photolyase PhrB1; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal YP_004316913.1 PFAM: Domain of unknown function DUF1731, C-terminal; NAD-dependent epimerase/dehydratase; KEGG: sli:Slin_0847 domain of unknown function DUF1731 YP_004316914.1 KEGG: fjo:Fjoh_3741 hypothetical protein YP_004316915.1 KEGG: phe:Phep_3718 cryptochrome, DASH family; TIGRFAM: Cryptochrome, DASH; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal YP_004316916.1 SMART: transketolase-like, pyrimidine-binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; KEGG: phe:Phep_3716 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: transketolase-like, pyrimidine-binding domain; dehydrogenase, E1 component YP_004316917.1 TIGRFAM: dihydrolipoamide succinyltransferase; KEGG: chu:CHU_3361 2-oxoglutarate dehydrogenase E2 component; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004316918.1 KEGG: hms:HMU02080 hypothetical protein YP_004316919.1 KEGG: phe:Phep_2974 hypothetical protein YP_004316920.1 KEGG: chu:CHU_0264 hypothetical protein YP_004316921.1 PFAM: Blue (type 1) copper domain; KEGG: lby:Lbys_1328 azurin YP_004316922.1 TIGRFAM: dihydrolipoamide dehydrogenase; KEGG: phe:Phep_3710 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004316923.1 PFAM: thioesterase; KEGG: bpy:Bphyt_7031 thioesterase superfamily protein YP_004316924.1 PFAM: Sulfatase; KEGG: phe:Phep_2548 sulfatase YP_004316925.1 PFAM: Sulfatase; KEGG: phe:Phep_3271 sulfatase YP_004316926.1 KEGG: phe:Phep_3170 hypothetical protein YP_004316927.1 PFAM: Acriflavin resistance protein; KEGG: phe:Phep_3708 acriflavin resistance protein YP_004316928.1 KEGG: phe:Phep_3707 efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004316929.1 PFAM: Outer membrane efflux protein; KEGG: lby:Lbys_3123 outer membrane efflux protein YP_004316930.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: phe:Phep_3705 regulatory protein TetR YP_004316931.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: phe:Phep_3704 regulatory protein TetR YP_004316932.1 PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase N-terminal; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: phe:Phep_3702 UDP-N-acetylenolpyruvoylglucosamine reductase YP_004316933.1 KEGG: phe:Phep_3701 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004316934.1 PFAM: cytochrome b5; KEGG: dfe:Dfer_3563 cytochrome b5 YP_004316935.1 PFAM: carbohydrate/purine kinase; KEGG: phe:Phep_3699 PfkB domain protein YP_004316936.1 KEGG: dfe:Dfer_0262 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004316937.1 TIGRFAM: glycyl-tRNA synthetase, alpha2 dimer; KEGG: phe:Phep_3249 glycyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; anticodon-binding YP_004316938.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sli:Slin_1715 glycerophosphoryl diester phosphodiesterase YP_004316939.1 PFAM: ABC transporter-like; KEGG: phe:Phep_3248 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004316940.1 KEGG: phe:Phep_2235 hypothetical protein YP_004316941.1 KEGG: phe:Phep_3236 ABC-type uncharacterized transport system involved in gliding motility auxiliary component; TIGRFAM: Gliding-associated ABC transporter substrate-binding GldG; PFAM: ABC-type uncharacterised transporter YP_004316942.1 TIGRFAM: succinate CoA transferase; KEGG: lby:Lbys_1257 succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase YP_004316943.1 KEGG: fjo:Fjoh_1352 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316944.1 SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: phe:Phep_3235 DNA polymerase III beta subunit; PFAM: DNA polymerase III beta chain, N-terminal; DNA polymerase III beta chain, central; DNA polymerase III beta chain, C-terminal YP_004316945.1 PFAM: SNARE associated Golgi protein; KEGG: abb:ABBFA_003391 protein DedA (protein DSG-1) YP_004316946.1 KEGG: phe:Phep_0602 ribosomal protein L3; TIGRFAM: ribosomal protein L3, bacterial/organelle-type; PFAM: ribosomal protein L3 YP_004316947.1 PFAM: ribosomal protein L4/L1e; KEGG: phe:Phep_0603 ribosomal protein L4/L1e YP_004316948.1 PFAM: ribosomal protein L25/L23; KEGG: phe:Phep_0604 ribosomal protein L25/L23 YP_004316949.1 KEGG: phe:Phep_0605 ribosomal protein L2; TIGRFAM: ribosomal protein L2, bacterial-type; PFAM: ribosomal protein L2, C-terminal; ribosomal proteins L2, RNA binding domain YP_004316950.1 KEGG: phe:Phep_0606 ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial-type; PFAM: ribosomal protein S19/S15 YP_004316951.1 KEGG: phe:Phep_0607 ribosomal protein L22; TIGRFAM: ribosomal protein L22, bacterial-type; PFAM: ribosomal protein L22/L17 YP_004316952.1 TIGRFAM: ribosomal protein S3, bacterial; PFAM: ribosomal protein S3, C-terminal; K Homology, type 2; ribosomal protein S3, N-terminal; KEGG: phe:Phep_0608 ribosomal protein S3; SMART: K Homology YP_004316953.1 TIGRFAM: ribosomal protein L16; HAMAP: ribosomal protein L16; KEGG: phe:Phep_0609 ribosomal protein L16; PFAM: ribosomal protein L10e/L16 YP_004316955.1 KEGG: phe:Phep_0610 ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29 YP_004316956.1 KEGG: phe:Phep_0611 ribosomal protein S17; TIGRFAM: ribosomal protein S17, bacterial-type; PFAM: ribosomal protein S17 YP_004316957.1 KEGG: phe:Phep_0612 ribosomal protein L14; TIGRFAM: ribosomal protein L14, bacterial-type; PFAM: ribosomal protein L14b/L23e YP_004316958.1 TIGRFAM: ribosomal protein L24; PFAM: KOW; KEGG: phe:Phep_0613 ribosomal protein L24; SMART: KOW YP_004316959.1 PFAM: ribosomal protein L5; KEGG: phe:Phep_0614 ribosomal protein L5 YP_004316960.1 KEGG: phe:Phep_0615 ribosomal protein S14; HAMAP: ribosomal protein S14, bacterial/plastid; PFAM: ribosomal protein S14 YP_004316961.1 PFAM: ribosomal protein S8; KEGG: phe:Phep_0616 ribosomal protein S8 YP_004316962.1 KEGG: phe:Phep_0617 ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial-type; PFAM: ribosomal protein L6, alpha-beta domain YP_004316963.1 KEGG: phe:Phep_0618 ribosomal protein L18; TIGRFAM: ribosomal protein L18, bacterial; PFAM: ribosomal protein L18/L5 YP_004316964.1 KEGG: phe:Phep_0619 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5, bacterial-type; PFAM: ribosomal protein S5, N-terminal; ribosomal protein S5, C-terminal YP_004316965.1 KEGG: phe:Phep_0620 ribosomal protein L30; TIGRFAM: ribosomal protein L30, bacterial-type; PFAM: ribosomal protein L30, ferredoxin-like fold domain YP_004316966.1 TIGRFAM: ribosomal protein L15, bacterial-type; KEGG: phe:Phep_0621 ribosomal protein L15 YP_004316967.1 KEGG: phe:Phep_0622 preprotein translocase, SecY subunit; TIGRFAM: SecY protein; PFAM: SecY protein YP_004316968.1 TIGRFAM: peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: phe:Phep_0623 methionine aminopeptidase, type I; PFAM: peptidase M24, structural domain YP_004316969.1 SMART: RNA-binding domain, S1; TIGRFAM: translation initiation factor IF-1; KEGG: phe:Phep_0624 translation initiation factor IF-1; HAMAP: translation initiation factor IF-1; PFAM: RNA-binding domain, S1, IF1 type YP_004316970.1 TIGRFAM: ribosomal protein L36; HAMAP: ribosomal protein L36; KEGG: phe:Phep_0625 ribosomal protein L36; PFAM: ribosomal protein L36 YP_004316971.1 KEGG: phe:Phep_0626 ribosomal protein S13; TIGRFAM: ribosomal protein S13, bacterial-type; PFAM: ribosomal protein S13 YP_004316972.1 KEGG: phe:Phep_0627 30S ribosomal protein S11; TIGRFAM: ribosomal protein S11, bacterial-type; PFAM: ribosomal protein S11 YP_004316973.1 TIGRFAM: ribosomal protein S4, bacterial-type; PFAM: ribosomal protein S4/S9, N-terminal; RNA-binding S4; KEGG: phe:Phep_0628 ribosomal protein S4; SMART: RNA-binding S4 YP_004316974.1 SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; TIGRFAM: DNA-directed RNA polymerase, subunit alpha; KEGG: phe:Phep_0629 DNA-directed RNA polymerase, subunit alpha; HAMAP: DNA-directed RNA polymerase, subunit alpha; PFAM: DNA-directed RNA polymerase, insert domain; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal YP_004316975.1 TIGRFAM: ribosomal protein L17; HAMAP: ribosomal protein L17; KEGG: phe:Phep_0630 ribosomal protein L17; PFAM: ribosomal protein L17 YP_004316976.1 KEGG: phe:Phep_0632 hypothetical protein YP_004316977.1 TIGRFAM: chaperone DnaK; HAMAP: chaperone DnaK; KEGG: phe:Phep_0633 chaperone protein DnaK; PFAM: heat shock protein 70 YP_004316978.1 KEGG: cpi:Cpin_2236 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004316979.1 KEGG: phe:Phep_0536 hypothetical protein YP_004316980.1 TIGRFAM: dihydroneopterin aldolase subgroup; dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; KEGG: sli:Slin_5834 dihydroneopterin aldolase; SMART: dihydroneopterin aldolase YP_004316981.1 KEGG: fps:FP0574 (S)-2-hydroxy-acid oxidase; PFAM: FAD-linked oxidase C-terminal; FAD linked oxidase N-terminal YP_004316982.1 KEGG: cpi:Cpin_0591 peptidase S9 prolyl oligopeptidase active site domain protein YP_004316983.1 KEGG: phe:Phep_0634 hypothetical protein YP_004316984.1 PFAM: protein of unknown function DUF853, nucleotide triphosphate hydrolase, KEGG: phe:Phep_0635 protein of unknown function DUF853 NPT hydrolase YP_004316985.1 KEGG: cvi:CV_2303 hypothetical protein YP_004316986.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase, long form; KEGG: lby:Lbys_1314 glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase YP_004316987.1 TIGRFAM: GDP-mannose 4,6-dehydratase; KEGG: phe:Phep_4001 GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004316988.1 KEGG: zpr:ZPR_1541 glycosyl hydrolases family 2; PFAM: glycoside hydrolase, family 2, TIM barrel; glycoside hydrolase, family 2, carbohydrate-binding; glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; glycoside hydrolase, family 42, domain 5 YP_004316989.1 KEGG: cpi:Cpin_1772 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004316990.1 PFAM: Outer membrane efflux protein; KEGG: cpi:Cpin_1773 outer membrane efflux protein YP_004316991.1 PFAM: Secretion protein HlyD; KEGG: cpi:Cpin_1774 secretion protein HlyD YP_004316992.1 KEGG: cpi:Cpin_1775 hypothetical protein YP_004316993.1 PFAM: protein of unknown function DUF1080; KEGG: cpi:Cpin_5826 protein of unknown function DUF1080 YP_004316994.1 TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; KEGG: phe:Phep_1143 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein YP_004316995.1 KEGG: phe:Phep_1144 hypothetical protein YP_004316996.1 TIGRFAM: Outer membrane assembly lipoprotein YfiO; KEGG: phe:Phep_1145 outer membrane assembly lipoprotein YfiO YP_004316997.1 KEGG: cpi:Cpin_3360 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain YP_004316998.1 KEGG: mse:Msed_0834 hypothetical protein YP_004316999.1 KEGG: phe:Phep_2369 hypothetical protein YP_004317000.1 KEGG: phe:Phep_2605 alpha-L-fucosidase; PFAM: glycoside hydrolase, family 29; SMART: glycoside hydrolase, family 29 YP_004317001.1 TIGRFAM: phospholipase C, phosphocholine-specific; KEGG: cpi:Cpin_1336 phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; phospholipase C, bacterial, C-terminal YP_004317002.1 KEGG: ame:411230 hypothetical protein ZPR1 YP_004317003.1 KEGG: cin:778541 transcription factor protein YP_004317004.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: cpi:Cpin_1552 TonB-dependent receptor plug YP_004317005.1 PFAM: RagB/SusD; KEGG: cpi:Cpin_1551 RagB/SusD domain protein YP_004317006.1 KEGG: cpi:Cpin_3290 hypothetical protein YP_004317007.1 PFAM: RagB/SusD; KEGG: srm:SRM_02405 outer membrane protein probably involved in nutrient binding YP_004317008.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: srm:SRM_02406 TonB-dependent receptor YP_004317009.1 PFAM: FecR protein; KEGG: cpi:Cpin_2819 anti-FecI sigma factor, FecR YP_004317010.1 TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; KEGG: cpi:Cpin_6662 RNA polymerase, sigma-24 subunit, ECF subfamily; SMART: transcription regulator LuxR, C-terminal YP_004317011.1 PFAM: polysaccharide biosynthesis protein; KEGG: fjo:Fjoh_2240 polysaccharide biosynthesis protein YP_004317013.1 PFAM: glycosyl transferase, family 4; KEGG: cpi:Cpin_0390 glycosyl transferase 4 YP_004317014.1 KEGG: phe:Phep_3918 hypothetical protein YP_004317015.1 PFAM: polysaccharide biosynthesis protein; KEGG: pru:PRU_1538 PTS system polysaccharide transporter YP_004317016.1 PFAM: glycosyl transferase, family 2; KEGG: bth:BT_0047 glycosyltransferase YP_004317017.1 PFAM: glycosyl transferase, group 1; KEGG: bfs:BF2799 glycosyltransferase YP_004317018.1 PFAM: glycosyl transferase, family 2; KEGG: bfr:BF2572 glycosyltransferase YP_004317019.1 KEGG: dfe:Dfer_4595 hypothetical protein YP_004317020.1 KEGG: dfe:Dfer_4594 hypothetical protein YP_004317021.1 PFAM: glycosyl transferase, family 2; KEGG: fba:FIC_01555 glycosyl transferase, family 2 YP_004317022.1 KEGG: vsp:VS_0225 lipopolysaccharide biosynthesis O-acetyl transferase WbbJ YP_004317023.1 PFAM: glycosyl transferase, family 2; KEGG: mtp:Mthe_0965 glycosyl transferase YP_004317024.1 KEGG: ade:Adeh_4294 hypothetical protein YP_004317025.1 KEGG: ade:Adeh_4294 hypothetical protein YP_004317026.1 PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: phe:Phep_3949 polysaccharide export protein YP_004317027.1 PFAM: Lipopolysaccharide biosynthesis; KEGG: fjo:Fjoh_0352 lipopolysaccharide biosynthesis protein YP_004317028.1 TIGRFAM: undecaprenyl-phosphate glucose phosphotransferase, WcaJ; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: cpi:Cpin_2278 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase YP_004317029.1 PFAM: polysaccharide biosynthesis protein; KEGG: mae:Maeo_0391 polysaccharide biosynthesis protein YP_004317030.1 PFAM: glycosyl transferase, family 2; KEGG: bth:BT_0047 glycosyltransferase YP_004317031.1 PFAM: glycosyl transferase, group 1; KEGG: naz:Aazo_4909 group 1 glycosyl transferase YP_004317032.1 PFAM: glycosyl transferase, family 2; KEGG: ter:Tery_4771 glycosyl transferase YP_004317033.1 KEGG: fbc:FB2170_09971 hypothetical protein YP_004317034.1 PFAM: glycosyl transferase, group 1; KEGG: clj:CLJU_c05430 glycosyltransferase YP_004317035.1 KEGG: sde:Sde_0158 acetyltransferase YP_004317036.1 KEGG: nha:Nham_3303 hypothetical protein YP_004317038.1 PFAM: Domain of unknown function DUF1972; KEGG: sua:Saut_0286 hypothetical protein YP_004317039.1 KEGG: ade:Adeh_4294 hypothetical protein YP_004317040.1 KEGG: ade:Adeh_4294 hypothetical protein YP_004317041.1 PFAM: Soluble ligand binding domain; polysaccharide export protein; KEGG: cpi:Cpin_4765 polysaccharide export periplasmic protein YP_004317042.1 TIGRFAM: Exopolysaccharide synthesis protein; KEGG: sli:Slin_4089 capsular exopolysaccharide family; PFAM: Lipopolysaccharide biosynthesis YP_004317043.1 KEGG: cpi:Cpin_4763 nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_004317044.1 PFAM: polysaccharide biosynthesis protein CapD-like; KEGG: vfi:VF_0140 UDP-N-acetylglucosamine 4,6-dehydratase YP_004317045.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: tdn:Suden_0593 DegT/DnrJ/EryC1/StrS aminotransferase YP_004317046.1 TIGRFAM: Sialic acid O-acyltransferase, NeuD; KEGG: aar:Acear_2113 sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family YP_004317047.1 SMART: SAF domain; TIGRFAM: N-acetylneuraminate synthase; KEGG: tdn:Suden_0595 N-acetylneuraminate synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; SAF domain YP_004317048.1 KEGG: hch:HCH_04836 UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase,UDP-hydrolysing; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_004317049.1 PFAM: nucleotidyl transferase; cystathionine beta-synthase, core; KEGG: bvu:BVU_4038 nucleotidyltransferase YP_004317050.1 KEGG: tit:Thit_0484 N-acylneuraminate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase YP_004317051.1 PFAM: polysaccharide biosynthesis protein; KEGG: rca:Rcas_0772 polysaccharide biosynthesis protein YP_004317052.1 KEGG: dba:Dbac_3260 hypothetical protein YP_004317053.1 KEGG: bba:Bd1689 hypothetical protein YP_004317054.1 KEGG: cbb:CLD_0512 streptogramin A acetyltransferase YP_004317055.1 PFAM: acyltransferase 3; KEGG: pgn:PGN_0003 hypothetical protein YP_004317056.1 KEGG: hha:Hhal_0798 glycosyl transferase; manually curated; PFAM: glycosyl transferase, family 2 YP_004317057.1 PFAM: glycosyl transferase, group 1; KEGG: apr:Apre_1267 glycosyl transferase group 1 YP_004317058.1 KEGG: hje:HacjB3_02875 hypothetical protein YP_004317059.1 PFAM: glycosyl transferase, group 1; KEGG: ssp:SSP0065 glycosyl transferase YP_004317060.1 TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: sat:SYN_02683 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_004317061.1 PFAM: glycosyl transferase, group 1; KEGG: mmw:Mmwyl1_0810 group 1 glycosyl transferase YP_004317062.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: fba:FIC_01933 UDP-glucose 4-epimerase YP_004317063.1 PFAM: Domain of unknown function DUF218; KEGG: vha:VIBHAR_01585 hypothetical protein YP_004317064.1 PFAM: glycosyl transferase, family 4; KEGG: fjo:Fjoh_0336 glycosyl transferase YP_004317066.1 PFAM: polysaccharide biosynthesis protein CapD-like; KEGG: phe:Phep_3919 polysaccharide biosynthesis protein CapD YP_004317067.1 KEGG: cpi:Cpin_4733 capsular polysaccharide biosynthesis protein YP_004317069.1 KEGG: cpy:Cphy_0623 hypothetical protein YP_004317071.1 KEGG: phe:Phep_3377 hypothetical protein YP_004317072.1 KEGG: adg:Adeg_1337 twitching mobility protein PilT; PFAM: PilT protein, N-terminal; SMART: nucleotide binding protein, PINc YP_004317073.1 KEGG: adg:Adeg_1338 hypothetical protein YP_004317074.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cpi:Cpin_6374 transcriptional regulator, TetR family YP_004317075.1 KEGG: lby:Lbys_1417 peroxiredoxin, OsmC subfamily; TIGRFAM: peroxiredoxin, osmotically inducible protein C, subgroup; PFAM: peroxiredoxin, OsmC-like protein YP_004317076.1 KEGG: cpi:Cpin_3375 alpha/beta hydrolase fold protein-3 domain protein YP_004317077.1 KEGG: cdu:CD36_16260 DNA repair protein YP_004317078.1 KEGG: bbt:BBta_2893 ABC transporter substrate-binding protein YP_004317079.1 KEGG: sli:Slin_2418 hypothetical protein YP_004317080.1 KEGG: chd:Calhy_2039 rok family protein YP_004317081.1 PFAM: Redoxin; KEGG: lby:Lbys_1369 redoxin domain protein YP_004317082.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: lby:Lbys_1986 TonB-dependent receptor plug YP_004317083.1 KEGG: cpi:Cpin_2265 hypothetical protein YP_004317084.1 KEGG: cin:100177897 similar to fibrillin 1 YP_004317085.1 KEGG: lby:Lbys_0959 cyclic nucleotide-binding protein YP_004317086.1 SMART: HTTM; KEGG: scl:sce1047 hypothetical protein YP_004317087.1 KEGG: pfo:Pfl01_0950 alginate biosynthesis protein AlgF YP_004317089.1 KEGG: lby:Lbys_2538 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain YP_004317090.1 KEGG: phe:Phep_2254 histidine kinase internal region YP_004317091.1 PFAM: transposase, IS116/IS110/IS902; KEGG: eck:EC55989_4650 transposase, IS110 family YP_004317092.1 KEGG: pgi:PG0850 excisionase DNA-binding protein YP_004317093.1 KEGG: rba:RB10524 RNA-binding protein YP_004317094.1 KEGG: phe:Phep_0895 excinuclease ABC C subunit domain protein; PFAM: excinuclease ABC, C subunit, N-terminal; SMART: excinuclease ABC, C subunit, N-terminal YP_004317095.1 KEGG: cat:CA2559_00400 hypothetical protein YP_004317096.1 KEGG: lby:Lbys_1050 hypothetical protein YP_004317097.1 KEGG: lby:Lbys_1051 hypothetical protein YP_004317098.1 KEGG: fps:FP2321 hypothetical protein YP_004317099.1 KEGG: phe:Phep_3691 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004317100.1 PFAM: FecR protein; KEGG: phe:Phep_0327 FecR protein YP_004317101.1 KEGG: phe:Phep_2667 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SMART: Secretin/TonB, short N-terminal YP_004317102.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_4497 RagB/SusD domain protein YP_004317103.1 KEGG: cyh:Cyan8802_2280 nucleotide binding protein PINc; TIGRFAM: protein of unknown function DUF132; SMART: nucleotide binding protein, PINc YP_004317104.1 KEGG: ana:asr4951 hypothetical protein YP_004317105.1 KEGG: ava:Ava_2494 hypothetical protein YP_004317106.1 PFAM: protein of unknown function DUF433; KEGG: syp:SYNPCC7002_A2801 hypothetical protein YP_004317107.1 KEGG: cpi:Cpin_7184 transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004317108.1 PFAM: FecR protein; KEGG: cpi:Cpin_7183 anti-FecI sigma factor, FecR YP_004317109.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: cpi:Cpin_6448 TonB-dependent receptor YP_004317110.1 PFAM: RagB/SusD; KEGG: cpi:Cpin_6447 RagB/SusD domain protein YP_004317111.1 KEGG: phe:Phep_1317 ATP-binding region ATPase domain protein; PFAM: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Two component regulator three Y; Two component regulator propeller; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HTH transcriptional regulator, AraC; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Helix-turn-helix, AraC type, DNA binding domain YP_004317112.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: bvu:BVU_0511 hypothetical protein YP_004317113.1 PFAM: RagB/SusD; KEGG: sli:Slin_6432 RagB/SusD domain protein YP_004317114.1 KEGG: bvu:BVU_3139 hypothetical protein YP_004317115.1 KEGG: phe:Phep_1360 exopolysaccharide biosynthesis protein YP_004317116.1 PFAM: RagB/SusD; KEGG: phe:Phep_1361 RagB/SusD domain protein YP_004317117.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: phe:Phep_1362 TonB-dependent receptor YP_004317118.1 PFAM: FecR protein; KEGG: cpi:Cpin_2882 anti-FecI sigma factor, FecR YP_004317119.1 KEGG: phe:Phep_0002 hypothetical protein YP_004317120.1 KEGG: phe:Phep_1502 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004317122.1 KEGG: smc:SmuNN2025_0255 hypothetical protein YP_004317123.1 KEGG: smb:smi_0060 excreted peptide YP_004317124.1 KEGG: zpr:ZPR_4403 DNA-binding protein YP_004317125.1 PFAM: ABC transporter-like; peptidase C39, bacteriocin processing; ABC transporter transmembrane domain; KEGG: zpr:ZPR_4399 probable bacteriocin/lantibiotic ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004317126.1 PFAM: Secretion protein HlyD; KEGG: dfe:Dfer_4909 secretion protein HlyD YP_004317128.1 KEGG: cpr:CPR_1761 molybdenum cofactor biosynthesis protein YP_004317129.1 PFAM: RagB/SusD; KEGG: pdi:BDI_2518 hypothetical protein YP_004317130.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: pdi:BDI_2519 hypothetical protein YP_004317131.1 KEGG: dfe:Dfer_4310 hypothetical protein YP_004317132.1 KEGG: lby:Lbys_3371 neuraminidase (sialidase)-like protein YP_004317133.1 KEGG: sli:Slin_6609 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004317134.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_3220 TonB-dependent receptor plug YP_004317135.1 KEGG: sli:Slin_6612 hypothetical protein YP_004317136.1 PFAM: PhoPQ-activated pathogenicity-related protein, PqaA type; glycerophosphoryl diester phosphodiesterase; KEGG: sli:Slin_6614 PhoPQ-activated pathogenicity-related protein PqaA type YP_004317137.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; KEGG: phe:Phep_1357 type I phosphodiesterase/nucleotide pyrophosphatase YP_004317138.1 KEGG: zpr:ZPR_2497 glycoside hydrolase; PFAM: glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; glycoside hydrolase, family 2, carbohydrate-binding YP_004317139.1 KEGG: dfe:Dfer_4330 transcriptional regulator, AraC family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004317140.1 PFAM: ROK; KEGG: sli:Slin_6585 ROK family protein YP_004317141.1 PFAM: carbon starvation protein CstA; KEGG: phe:Phep_3960 carbon starvation protein CstA YP_004317142.1 KEGG: cbt:CLH_2978 hypothetical protein YP_004317143.1 PFAM: cytochrome C oxidase subunit I; KEGG: phe:Phep_0295 cytochrome-c oxidase YP_004317145.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: fjo:Fjoh_0873 LysR family transcriptional regulator YP_004317146.1 PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; KEGG: gfo:GFO_0761 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme YP_004317147.1 PFAM: Amidohydrolase 1; KEGG: dfe:Dfer_0258 amidohydrolase YP_004317148.1 KEGG: phe:Phep_2356 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004317149.1 PFAM: FecR protein; KEGG: pdi:BDI_1159 anti-sigma factor YP_004317150.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: bvu:BVU_1152 hypothetical protein YP_004317151.1 PFAM: RagB/SusD; KEGG: cpi:Cpin_3644 RagB/SusD domain protein YP_004317152.1 PFAM: metallo-dependent phosphatase; KEGG: sli:Slin_4977 metallophosphoesterase YP_004317153.1 KEGG: bfr:BF3791 RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004317154.1 KEGG: dfe:Dfer_4030 ankyrin YP_004317155.1 PFAM: Amidohydrolase 1; KEGG: cpi:Cpin_7130 deaminase YP_004317156.1 KEGG: cpi:Cpin_7131 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004317157.1 PFAM: FecR protein; KEGG: dfe:Dfer_1792 anti-FecI sigma factor, FecR YP_004317158.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_1858 TonB-dependent receptor plug YP_004317159.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_1857 RagB/SusD domain protein YP_004317160.1 KEGG: bth:BT_4159 hypothetical protein YP_004317161.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: zpr:ZPR_0253 TonB-dependent receptor Plug domain protein YP_004317162.1 KEGG: zpr:ZPR_0252 hypothetical protein YP_004317164.1 KEGG: sli:Slin_6421 PHP domain protein YP_004317165.1 KEGG: fbc:FB2170_12881 response regulator receiver signal transduction histidine kinase; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain YP_004317166.1 manually curated; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: mev:Metev_2106 signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain YP_004317167.1 KEGG: cpi:Cpin_2278 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; undecaprenyl-phosphate glucose phosphotransferase, WcaJ; PFAM: Bacterial sugar transferase YP_004317170.1 KEGG: phe:Phep_3485 hypothetical protein YP_004317171.1 TIGRFAM: GDP-mannose 4,6-dehydratase; KEGG: cpi:Cpin_2364 GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004317172.1 PFAM: membrane bound O-acyl transferase, MBOAT; KEGG: fps:FP1411 sugar O-acetyltransferase precursor YP_004317173.1 KEGG: ipo:Ilyop_0805 hypothetical protein YP_004317174.1 PFAM: Multi antimicrobial extrusion protein; KEGG: bfr:BF2776 flippase YP_004317175.1 KEGG: cyj:Cyan7822_2807 hypothetical protein YP_004317176.1 PFAM: glycosyl transferase, family 2; KEGG: bpb:bpr_I0439 polysaccharide deacetylase Est4B YP_004317177.1 KEGG: chu:CHU_2756 hexapeptide repeat-containing protein acetyltransferase YP_004317178.1 PFAM: glycosyl transferase, group 1; KEGG: ana:alr2860 hypothetical protein YP_004317179.1 KEGG: bpb:bpr_I2859 exopolysaccharide biosynthesis pyruvyltransferase ExoV YP_004317180.1 PFAM: glycosyl transferase, family 14; KEGG: ana:alr4323 hypothetical protein YP_004317181.1 KEGG: bbe:BBR47_16580 hypothetical membrane protein YP_004317182.1 PFAM: glycosyl transferase, group 1; KEGG: cat:CA2559_02925 glycosyltransferase YP_004317183.1 PFAM: glycosyl transferase, group 1; KEGG: sli:Slin_6297 glycosyl transferase group 1 YP_004317184.1 PFAM: Bacterial transferase hexapeptide repeat; KEGG: sli:Slin_6296 transferase YP_004317185.1 PFAM: glycosyl transferase, family 2; KEGG: sli:Slin_6295 glycosyl transferase 2 YP_004317186.1 PFAM: glycosyl transferase, group 1; KEGG: chu:CHU_0913 A-glycosyltransferase YP_004317187.1 KEGG: rmr:Rmar_2742 hypothetical protein YP_004317188.1 PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: cpi:Cpin_4765 polysaccharide export periplasmic protein YP_004317189.1 TIGRFAM: Exopolysaccharide synthesis protein; KEGG: cpi:Cpin_4764 capsular exopolysaccharide family; PFAM: Lipopolysaccharide biosynthesis YP_004317190.1 TIGRFAM: nucleotide sugar dehydrogenase; KEGG: zpr:ZPR_0543 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_004317192.1 KEGG: tpt:Tpet_0642 LamG domain-containing protein YP_004317193.1 KEGG: tet:TTHERM_00188700 hypothetical protein YP_004317194.1 KEGG: zpr:ZPR_0825 phosphatase/phosphohexomutase-like protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004317195.1 KEGG: bth:BT_3277 RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004317196.1 PFAM: FecR protein; KEGG: phe:Phep_0955 FecR protein YP_004317197.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: sli:Slin_0106 TonB-dependent receptor plug YP_004317198.1 PFAM: RagB/SusD; KEGG: sli:Slin_0107 RagB/SusD domain protein YP_004317199.1 KEGG: phe:Phep_3962 hypothetical protein YP_004317200.1 PFAM: choloylglycine hydrolase; KEGG: syf:Synpcc7942_2150 Penicillin V acylase precursor. cysteine peptidase. MEROPS family C59 YP_004317201.1 KEGG: phe:Phep_0100 hypothetical protein YP_004317202.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: bth:BT_0317 hypothetical protein YP_004317203.1 KEGG: cpi:Cpin_1885 hypothetical protein YP_004317204.1 KEGG: lby:Lbys_1315 hypothetical protein YP_004317205.1 KEGG: fjo:Fjoh_3111 glycoside hydrolase; PFAM: glycoside hydrolase, family 2, carbohydrate-binding; glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; glycoside hydrolase, family 2, TIM barrel YP_004317206.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_1487 RagB/SusD domain protein YP_004317207.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: dfe:Dfer_1488 TonB-dependent receptor YP_004317208.1 KEGG: dfe:Dfer_1489 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Two component regulator three Y; Two component regulator propeller; Signal transduction response regulator, receiver domain; HTH transcriptional regulator, AraC; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Helix-turn-helix, AraC type, DNA binding domain YP_004317209.1 KEGG: hap:HAPS_2234 peptide transporter ATP-binding protein YP_004317210.1 PFAM: glycosyl hydrolase 53; KEGG: bxe:Bxe_A3851 hypothetical protein YP_004317211.1 PFAM: PepSY-associated TM helix; KEGG: dfe:Dfer_4297 PepSY-associated TM helix domain protein YP_004317212.1 KEGG: bvu:BVU_2324 aldose 1-epimerase precursor; PFAM: aldose 1-epimerase YP_004317213.1 KEGG: lil:LA_2269 cysteine desulfhydrase YP_004317214.1 KEGG: sli:Slin_4776 pyridoxal-5'-phosphate-dependent protein subunit beta YP_004317215.1 KEGG: sli:Slin_2506 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004317216.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: phe:Phep_0707 pseudouridine synthase YP_004317217.1 KEGG: aeh:Mlg_2858 outer membrane protein domain-containing protein YP_004317218.1 KEGG: dfe:Dfer_1233 hypothetical protein YP_004317219.1 KEGG: phe:Phep_3597 regulatory protein GntR HTH; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004317220.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_2602 TonB-dependent receptor plug YP_004317221.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_2603 RagB/SusD domain protein YP_004317222.1 KEGG: cpi:Cpin_3540 hypothetical protein YP_004317223.1 KEGG: cpi:Cpin_3543 hypothetical protein YP_004317224.1 PFAM: Domain of unknown function DUF303, acetylesterase KEGG: phe:Phep_3591 hypothetical protein YP_004317225.1 PFAM: glycoside hydrolase, family 31; KEGG: lmy:LM5923_2589 hypothetical protein YP_004317226.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: phe:Phep_3588 hypothetical protein YP_004317227.1 KEGG: cpi:Cpin_3541 Na+/solute symporter; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter YP_004317228.1 TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpB type; PFAM: RNA helicase, ATP-dependent, HrpB type, C-terminal; Helicase, C-terminal; Helicase-associated domain; KEGG: msv:Mesil_2844 ATP-dependent helicase HrpB; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase-associated domain YP_004317229.1 PFAM: Domain of unknown function DUF418; KEGG: fbc:FB2170_11646 transporter YP_004317230.1 KEGG: phe:Phep_3888 capsular polysaccharide biosynthesis protein YP_004317231.1 KEGG: phe:Phep_0634 hypothetical protein YP_004317232.1 KEGG: phe:Phep_2062 mannose-1-phosphate guanylyltransferase; PFAM: nucleotidyl transferase YP_004317233.1 PFAM: VanZ-like; KEGG: csh:Closa_1603 VanZ family protein YP_004317234.1 TIGRFAM: nucleotide sugar dehydrogenase; KEGG: zpr:ZPR_0543 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_004317236.1 KEGG: cpi:Cpin_4294 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004317237.1 PFAM: Sulphatase-modifying factor; KEGG: phe:Phep_0383 protein of unknown function DUF323 YP_004317238.1 KEGG: phe:Phep_0386 hypothetical protein YP_004317239.1 KEGG: aeh:Mlg_2858 outer membrane protein domain-containing protein YP_004317240.1 TIGRFAM: Gliding motility-associated protein, GldL; KEGG: phe:Phep_0384 hypothetical protein YP_004317241.1 TIGRFAM: Gliding motility-associated protein GldM; KEGG: phe:Phep_0385 hypothetical protein YP_004317242.1 KEGG: cpi:Cpin_2362 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004317243.1 PFAM: acyltransferase 3; KEGG: scb:SCAB_3611 integral membrane protein YP_004317244.1 PFAM: polysaccharide biosynthesis protein; KEGG: bse:Bsel_3039 polysaccharide biosynthesis protein YP_004317245.1 PFAM: nitroreductase-like; KEGG: sse:Ssed_2982 nitroreductase-like protein YP_004317246.1 KEGG: sse:Ssed_2981 hypothetical protein YP_004317247.1 PFAM: glycosyl transferase, family 2; KEGG: amr:AM1_5713 glycosyl transferase, group 2 family protein YP_004317248.1 PFAM: alpha-D-phosphohexomutase, alpha/beta/alpha domain I; alpha-D-phosphohexomutase, alpha/beta/alpha domain II; alpha-D-phosphohexomutase, alpha/beta/alpha domain III; KEGG: phe:Phep_2334 glucose-1,6-bisphosphate synthase YP_004317249.1 KEGG: chu:CHU_3778 hypothetical protein YP_004317250.1 KEGG: fjo:Fjoh_0357 NusG antitermination factor; PFAM: transcription antitermination protein, NusG, N-terminal; SMART: transcription antitermination protein, NusG, N-terminal YP_004317251.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: nde:NIDE2687 hypothetical protein YP_004317252.1 PFAM: glycosyl transferase, family 2; KEGG: naz:Aazo_4911 family 2 glycosyl transferase YP_004317253.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: pfo:Pfl01_4046 DegT/DnrJ/EryC1/StrS aminotransferase YP_004317254.1 KEGG: cby:CLM_3080 hypothetical protein YP_004317255.1 PFAM: Soluble ligand binding domain; polysaccharide export protein; KEGG: cpi:Cpin_4765 polysaccharide export periplasmic protein YP_004317256.1 manually curated; TIGRFAM: Exopolysaccharide synthesis protein; KEGG: cpi:Cpin_4764 capsular exopolysaccharide family; PFAM: Lipopolysaccharide biosynthesis YP_004317257.1 KEGG: bcx:BCA_5414 hypothetical protein YP_004317258.1 PFAM: glycosyl hydrolase 53; KEGG: rhi:NGR_b13570 hypothetical protein YP_004317259.1 PFAM: glycosyl transferase, group 1; KEGG: plt:Plut_0774 glycosyl transferase, group 1 family protein YP_004317260.1 PFAM: Bacterial transferase hexapeptide repeat; KEGG: dge:Dgeo_0348 serine O-acetyltransferase YP_004317261.1 PFAM: glycosyl transferase, group 1; KEGG: plt:Plut_0772 glycosyl transferase, group 1 family protein YP_004317262.1 KEGG: rhi:NGR_b13570 hypothetical protein YP_004317263.1 PFAM: glycosyl transferase, group 1; KEGG: nis:NIS_1404 glycosyl transferase YP_004317264.1 KEGG: rbi:RB2501_13334 hypothetical protein YP_004317265.1 TIGRFAM: undecaprenyl-phosphate glucose phosphotransferase, WcaJ; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: cpi:Cpin_2376 undecaprenyl-phosphate glucose phosphotransferase; PFAM: Bacterial sugar transferase YP_004317266.1 KEGG: cpy:Cphy_3475 Ig domain-containing protein YP_004317267.1 KEGG: cpi:Cpin_4294 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004317268.1 KEGG: ant:Arnit_2428 methyl-accepting chemotaxis sensory transducer YP_004317270.1 KEGG: tnp:Tnap_0803 reverse gyrase YP_004317271.1 KEGG: dfe:Dfer_2392 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004317272.1 KEGG: chu:CHU_3028 two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004317273.1 PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: cpi:Cpin_1318 UBA/ThiF-type NAD/FAD binding protein YP_004317274.1 KEGG: cpi:Cpin_1317 hypothetical protein YP_004317275.1 KEGG: chu:CHU_2796 phosphoglycerate transport; protein for signal transmission; PFAM: 7TM-DISM receptor, extracellular domain, type 1; 7TM-DISM receptor, extracellular domain, type 2; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain YP_004317276.1 KEGG: chu:CHU_2793 two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004317277.1 PFAM: oxidoreductase, N-terminal; KEGG: dfe:Dfer_4270 oxidoreductase domain protein YP_004317278.1 PFAM: transposase, IS4-like; KEGG: bvu:BVU_1595 transposase YP_004317279.1 KEGG: ipo:Ilyop_0805 hypothetical protein YP_004317281.1 KEGG: cpi:Cpin_0346 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004317282.1 KEGG: cpi:Cpin_0345 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004317283.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: cpi:Cpin_7177 TonB-dependent receptor plug YP_004317284.1 PFAM: RagB/SusD; KEGG: cpi:Cpin_7176 RagB/SusD domain protein YP_004317285.1 KEGG: cpi:Cpin_6474 coagulation factor 5/8 type domain protein; PFAM: Coagulation factor 5/8 type, C-terminal; SMART: glycoside hydrolase, family 29 YP_004317286.1 KEGG: zpr:ZPR_2731 alpha-1,2-mannosidase; TIGRFAM: alpha-1,2-mannosidase, PFAM: glycosyl hydrolase 92 YP_004317287.1 PFAM: Uncharacterised protein family, basic secretory protein; KEGG: cpi:Cpin_5567 basic secretory protein YP_004317288.1 KEGG: sli:Slin_2353 alpha-1,2-mannosidase; TIGRFAM: alpha-1,2-mannosidase, PFAM: glycosyl hydrolase 92 YP_004317289.1 KEGG: ssp:SSP0505 transcriptional regulator YP_004317290.1 KEGG: fba:FIC_00775 two component system histidine kinase/response regulator fusion protein; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain YP_004317291.1 KEGG: fba:FIC_00776 DNA-binding response regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004317292.1 PFAM: Sugar isomerase (SIS); glutamine amidotransferase, class-II; TIGRFAM: glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: glucosamine-fructose-6-phosphate aminotransferase, isomerising; KEGG: phe:Phep_0131 glucosamine--fructose-6-phosphate aminotransferase YP_004317293.1 KEGG: cho:Chro.30478 hypothetical protein YP_004317294.1 PFAM: Bacterial sugar transferase; KEGG: chu:CHU_1927 sugar transferase YP_004317295.1 PFAM: glycosyl transferase, family 2; KEGG: sea:SeAg_B2210 O antigen biosynthesis rhamnosyltransferase YP_004317296.1 TIGRFAM: Parallel beta-helix repeat-2; KEGG: mma:MM_0066 hypothetical protein YP_004317297.1 PFAM: glycosyl transferase, group 1; KEGG: see:SNSL254_A2265 second mannosyl transferase YP_004317298.1 KEGG: cpf:CPF_0601 hypothetical protein YP_004317299.1 PFAM: glycosyl transferase, group 1; KEGG: psa:PST_1756 glycosyl transferase, group 1 family protein YP_004317300.1 PFAM: glycosyl transferase, group 1; KEGG: naz:Aazo_4909 group 1 glycosyl transferase YP_004317301.1 PFAM: glycosyl transferase, family 2; KEGG: bth:BT_0047 glycosyltransferase YP_004317302.1 PFAM: polysaccharide biosynthesis protein; KEGG: dfe:Dfer_0062 polysaccharide biosynthesis protein YP_004317303.1 KEGG: bge:BC1002_5982 hypothetical protein YP_004317304.1 KEGG: coc:Coch_0981 twin-arginine translocation protein, TatA/E family subunit; HAMAP: Twin-arginine translocation protein TatA/E; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106 YP_004317305.1 KEGG: phe:Phep_3182 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004317306.1 KEGG: vha:VIBHAR_00675 3-oxoacyl-(acyl-carrier protein) synthase; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal YP_004317307.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: phe:Phep_1735 Mg2 transporter protein CorA family protein YP_004317308.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: dfe:Dfer_1523 endonuclease/exonuclease/phosphatase YP_004317309.1 PFAM: glycoside hydrolase, family 43; KEGG: dfe:Dfer_0193 glycoside hydrolase 43 YP_004317310.1 TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: phe:Phep_3917 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase YP_004317311.1 PFAM: NUDIX hydrolase domain; KEGG: phe:Phep_3605 NUDIX hydrolase YP_004317312.1 KEGG: phe:Phep_1632 hypothetical protein YP_004317313.1 TIGRFAM: glycine cleavage system P protein, homodimeric; HAMAP: glycine cleavage system P protein, homodimeric; KEGG: phe:Phep_3679 glycine dehydrogenase; PFAM: glycine cleavage system P-protein, N-terminal YP_004317314.1 KEGG: phe:Phep_0469 hypothetical protein YP_004317315.1 KEGG: phe:Phep_3833 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), phosphate acetyltransferase; PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; phosphate acetyl/butaryl transferase; SMART: Malic enzyme, NAD-binding YP_004317316.1 TIGRFAM: Bacterial DNA recombination protein RuvA; HAMAP: Bacterial DNA recombination protein RuvA; KEGG: phe:Phep_3832 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal YP_004317317.1 KEGG: phe:Phep_3747 hypothetical protein YP_004317318.1 KEGG: pfd:PFDG_01107 hypothetical protein YP_004317319.1 TIGRFAM: Domain of unknown function DUF11; PFAM: Bacterial Ig-like, group 1; Domain of unknown function DUF11; KEGG: fjo:Fjoh_3478 hypothetical protein; SMART: Bacterial Ig-like, group 1 YP_004317320.1 TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; KEGG: phe:Phep_2592 hypothetical protein YP_004317321.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like beta Propeller; KEGG: cat:CA2559_13643 OmpA family protein YP_004317322.1 KEGG: dfe:Dfer_2086 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004317324.1 KEGG: phe:Phep_4236 hypothetical protein YP_004317325.1 PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; KEGG: cpi:Cpin_6403 CheB methylesterase YP_004317326.1 PFAM: Signal transduction histidine kinase, internal region; ATPase-like, ATP-binding domain; KEGG: phe:Phep_3160 histidine kinase internal region YP_004317327.1 KEGG: phe:Phep_3159 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain YP_004317328.1 KEGG: phe:Phep_3158 hypothetical protein YP_004317329.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold-3; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: sli:Slin_4198 PAS/PAC sensor hybrid histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; GAF; PAC motif YP_004317330.1 KEGG: dfe:Dfer_5552 outer membrane protein-like protein YP_004317331.1 manually curated; KEGG: phe:Phep_2433 hypothetical protein YP_004317332.1 KEGG: cpi:Cpin_4413 hypothetical protein YP_004317333.1 KEGG: tin:Tint_1133 histone family protein DNA-binding protein; PFAM: histone-like bacterial DNA-binding protein; SMART: histone-like bacterial DNA-binding protein YP_004317334.1 PFAM: Cyclic nucleotide-binding domain; KEGG: cat:CA2559_10488 hypothetical protein YP_004317335.1 KEGG: ctu:Ctu_09200 hypothetical protein YP_004317336.1 KEGG: cpi:Cpin_6151 NUDIX hydrolase; TIGRFAM: nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase domain YP_004317337.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: phe:Phep_1521 glyoxalase/bleomycin resistance protein/dioxygenase YP_004317338.1 KEGG: phe:Phep_3508 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004317339.1 KEGG: cpi:Cpin_0412 ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN-related YP_004317340.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: dma:DMR_27630 TonB-dependent receptor YP_004317341.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: gur:Gura_0776 biopolymer transporter-like protein YP_004317342.1 PFAM: protein of unknown function DUF2149; KEGG: glo:Glov_3672 hypothetical protein YP_004317343.1 KEGG: ppd:Ppro_1232 cobaltochelatase; PFAM: CobN/magnesium chelatase YP_004317344.1 PFAM: pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: cpi:Cpin_4880 pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_004317346.1 PFAM: protein of unknown function DUF389; KEGG: cli:Clim_1362 hypothetical protein YP_004317347.1 KEGG: cre:CHLREDRAFT_30532 glyoxal or galactose oxidase YP_004317348.1 PFAM: glycosidase, PH1107-related; KEGG: dfe:Dfer_5159 glycosidase PH1107-related YP_004317349.1 PFAM: glycosyl transferase, group 1; KEGG: dfe:Dfer_5160 glycosyl transferase group 1 YP_004317350.1 PFAM: glycosyl transferase, group 1; KEGG: dfe:Dfer_5161 glycosyl transferase group 1 YP_004317351.1 KEGG: gfo:GFO_2876 3-oxoacyl-[acyl-carrier-protein] synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal YP_004317352.1 manually curated; PFAM: Cold-shock protein, DNA-binding; KEGG: phe:Phep_0530 cold-shock protein DNA-binding; SMART: Cold shock protein YP_004317353.1 PFAM: Helix-turn-helix, HxlR type; KEGG: cpi:Cpin_5264 HxlR family transcriptional regulator YP_004317354.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: sli:Slin_6559 NADP oxidoreductase coenzyme F420-dependent YP_004317355.1 KEGG: llo:LLO_1356 carbonic anhydrase; PFAM: carbonic anhydrase; SMART: carbonic anhydrase YP_004317356.1 KEGG: psa:PST_1777 hypothetical protein YP_004317357.1 KEGG: phe:Phep_0424 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004317358.1 KEGG: phe:Phep_0423 hypothetical protein YP_004317359.1 KEGG: ddr:Deide_16780 shikimate kinase YP_004317360.1 KEGG: dfe:Dfer_0748 hypothetical protein YP_004317362.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: lbf:LBF_0202 acetyltransferase YP_004317363.1 KEGG: lby:Lbys_0988 pyridoxamine 5'-phosphate oxidase-related fmN-binding protein YP_004317364.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: dfe:Dfer_1796 GCN5-related N-acetyltransferase YP_004317366.1 KEGG: mru:mru_2043 adhesin-like protein YP_004317367.1 PFAM: Uncharacterised protein family UPF0118; KEGG: cpi:Cpin_6357 protein of unknown function UPF0118 YP_004317368.1 PFAM: CsbD-like; KEGG: cpi:Cpin_1931 CsbD family protein YP_004317369.1 KEGG: phe:Phep_2659 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02284; PFAM: Domain of unknown function DUF2383 YP_004317370.1 KEGG: ppy:PPE_01590 hypothetical oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004317371.1 PFAM: Helix-turn-helix, HxlR type; KEGG: cpi:Cpin_1690 HxlR family transcriptional regulator YP_004317372.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: phe:Phep_2872 endonuclease/exonuclease/phosphatase YP_004317373.1 KEGG: cyh:Cyan8802_3362 hypothetical protein YP_004317374.1 KEGG: cpi:Cpin_4294 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004317375.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: nwa:Nwat_0734 extracellular solute-binding protein YP_004317376.1 KEGG: sli:Slin_6946 domain of unknown function DUF1791 YP_004317377.1 PFAM: cytochrome C, class I; KEGG: azo:azo2669 cytochrome c family protein YP_004317378.1 KEGG: sta:STHERM_c07030 hypothetical protein; PFAM: Isochorismatase-like YP_004317379.1 PFAM: Molybdenum cofactor sulfurase, C-terminal; MOSC, N-terminal beta barrel; KEGG: cpi:Cpin_0141 MOSC domain containing protein YP_004317380.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ote:Oter_1479 CDP-alcohol phosphatidyltransferase YP_004317381.1 TIGRFAM: PAS; PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; PAS fold-3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: phe:Phep_3913 PAS sensor protein; SMART: MCP methyltransferase, CheR-type; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain YP_004317382.1 KEGG: phe:Phep_3914 phytochrome central region domain protein; PFAM: Phytochrome, central region; GAF; PAS fold-2; SMART: GAF YP_004317383.1 KEGG: cpi:Cpin_5027 hypothetical protein YP_004317384.1 KEGG: lby:Lbys_3254 CsbD family protein YP_004317385.1 KEGG: cte:CT1052 M20/M25/M40 family peptidase YP_004317386.1 KEGG: dfe:Dfer_2138 ribulose-bisphosphate carboxylase; PFAM: ribulose bisphosphate carboxylase, large subunit, C-terminal YP_004317387.1 PFAM: protein of unknown function, DUF1537; KEGG: dfe:Dfer_2139 type III effector Hrp-dependent outers YP_004317388.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: dfe:Dfer_2141 Asp/Glu/hydantoin racemase YP_004317389.1 PFAM: sodium symporter; KEGG: dfe:Dfer_2140 bile acid:sodium symporter YP_004317390.1 PFAM: glycoside hydrolase, family 43; KEGG: dfe:Dfer_0823 glycoside hydrolase 43 YP_004317391.1 KEGG: dfe:Dfer_0130 alpha-L-fucosidase; PFAM: glycoside hydrolase, family 29; SMART: glycoside hydrolase, family 29 YP_004317392.1 KEGG: phe:Phep_0793 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004317393.1 KEGG: aba:acid345_2348 two component LuxR family transcriptional regulator; PFAM: transcription regulator LuxR, C-terminal; SMART: transcription regulator LuxR, C-terminal YP_004317394.1 PFAM: protein of unknown function DUF421; KEGG: sli:Slin_3116 protein of unknown function DUF421 YP_004317395.1 PFAM: protein of unknown function DUF421; KEGG: dfe:Dfer_0520 protein of unknown function DUF421 YP_004317396.1 KEGG: msl:Msil_3475 hypothetical protein YP_004317397.1 KEGG: rxy:Rxyl_0708 hypothetical protein YP_004317398.1 PFAM: protein of unknown function DUF421; KEGG: pla:Plav_3287 hypothetical protein YP_004317399.1 KEGG: phe:Phep_0793 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004317400.1 KEGG: cpi:Cpin_5022 hypothetical protein YP_004317401.1 KEGG: dre:572091 wu:fi37d12 YP_004317402.1 KEGG: dfe:Dfer_5585 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004317403.1 KEGG: alv:Alvin_3108 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_004317404.1 KEGG: npu:Npun_R4776 multi-sensor signal transduction histidine kinase YP_004317405.1 KEGG: dfe:Dfer_0151 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase, family 13, N-terminal; glycosyl hydrolase, family 13, catalytic domain; alpha-amylase, C-terminal all beta; TIGRFAM: 1,4-alpha-glucan-branching enzyme; HAMAP: 1,4-alpha-glucan-branching enzyme; SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain YP_004317406.1 SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Trehalose synthase/alpha-amylase, N-terminal; Trehalose synthase/probable maltokinase, C-terminal; KEGG: dfe:Dfer_0152 trehalose synthase; PFAM: glycosyl hydrolase, family 13, catalytic domain YP_004317407.1 KEGG: dfe:Dfer_0153 alpha amylase catalytic region; PFAM: glycosyl hydrolase, family 13, catalytic domain; SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain YP_004317408.1 PFAM: peptidase S66, LD-carboxypeptidase A; KEGG: lin:lin1679 hypothetical protein YP_004317409.1 KEGG: dfe:Dfer_5178 outer membrane protein YP_004317410.1 KEGG: fba:FIC_01768 beta-lactamase-like protein; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004317411.1 KEGG: fba:FIC_01807 hypothetical protein YP_004317412.1 KEGG: dfe:Dfer_0649 hypothetical protein YP_004317413.1 KEGG: cpi:Cpin_5024 hypothetical protein YP_004317414.1 KEGG: dfe:Dfer_1680 catalase; PFAM: catalase, manganese YP_004317415.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: scl:sce9291 two-component sensor histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; PAC motif; PAS YP_004317416.1 SMART: transketolase-like, pyrimidine-binding domain; TIGRFAM: transketolase, bacterial-like; KEGG: sli:Slin_2594 transketolase; PFAM: transketolase, N-terminal; transketolase-like, pyrimidine-binding domain; transketolase, C-terminal YP_004317417.1 KEGG: tra:Trad_1769 transaldolase; TIGRFAM: transaldolase 2; PFAM: transaldolase YP_004317418.1 KEGG: cpi:Cpin_3597 haloacid dehalogenase domain protein hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004317419.1 KEGG: pkn:PKH_145630 merozoite surface protein YP_004317420.1 KEGG: cpi:Cpin_6721 hypothetical protein YP_004317421.1 KEGG: phe:Phep_3831 hypothetical protein YP_004317422.1 TIGRFAM: glycine cleavage H-protein, subgroup; HAMAP: glycine cleavage H-protein; KEGG: phe:Phep_3830 glycine cleavage system H protein; PFAM: glycine cleavage H-protein YP_004317423.1 PFAM: VanZ-like; KEGG: phe:Phep_3829 VanZ family protein YP_004317424.1 KEGG: phe:Phep_3828 FeoA family protein; PFAM: Ferrous iron transporter Feosubunit alpha; SMART: Ferrous iron transporter Feosubunit alpha YP_004317425.1 KEGG: phe:Phep_3827 ferrous iron transporter B; TIGRFAM: Ferrous iron transporter B; Small GTP-binding protein; PFAM: Ferrous iron transporter B, N-terminal; GTP-binding protein, HSR1-related; nucleoside recognition; Ferrous iron transporter B, C-terminal YP_004317427.1 KEGG: phe:Phep_3826 hypothetical protein YP_004317428.1 KEGG: phe:Phep_2078 protein of unknown function DUF480; HAMAP: protein of unknown function DUF480; PFAM: protein of unknown function DUF480 YP_004317429.1 TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; KEGG: phe:Phep_3456 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type YP_004317430.1 KEGG: pdi:BDI_0987 pyruvate dehydrogenase; PFAM: thiamine pyrophosphate enzyme, C-terminal TPP-binding; thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; thiamine pyrophosphate enzyme, central domain YP_004317431.1 KEGG: dfe:Dfer_3616 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H YP_004317432.1 PFAM: 4Fe-4S binding domain; KEGG: dfe:Dfer_4037 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_004317433.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: cli:Clim_0850 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_004317434.1 manually curated; HAMAP: NADH-ubiquinone oxidoreductase chain 4L/K; KEGG: dfe:Dfer_4039 NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH-ubiquinone oxidoreductase chain 4L/K YP_004317435.1 TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; KEGG: pvi:Cvib_1085 proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal YP_004317436.1 TIGRFAM: NADH-quinone oxidoreductase, chain M/4; KEGG: cli:Clim_0853 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004317437.1 HAMAP: NAD(P)H-quinone oxidoreductase, subunit N/subunit 2; KEGG: cts:Ctha_2555 proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004317438.1 KEGG: lby:Lbys_1140 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter YP_004317439.1 KEGG: rbi:RB2501_07515 amidophosphoribosyltransferase; PFAM: glutamine amidotransferase, class-II YP_004317440.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: phe:Phep_0991 lysine exporter protein (LysE/YggA) YP_004317441.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: phe:Phep_0992 CMP/dCMP deaminase zinc-binding YP_004317442.1 PFAM: methyltransferase type 12; KEGG: mac:MA1733 hypothetical protein YP_004317443.1 PFAM: carboxylyase-related; KEGG: phe:Phep_2913 carboxylyase-related protein YP_004317444.1 KEGG: sli:Slin_6540 hypothetical protein YP_004317445.1 PFAM: Ferritin/Dps protein; KEGG: phe:Phep_0800 ferritin Dps family protein YP_004317446.1 KEGG: phe:Phep_1397 hypothetical protein YP_004317447.1 KEGG: cpi:Cpin_1457 alpha-1,2-mannosidase; TIGRFAM: alpha-1,2-mannosidase, PFAM: glycosyl hydrolase 92 YP_004317448.1 TIGRFAM: Folylpolyglutamate synthetase; KEGG: phe:Phep_1166 FolC bifunctional protein; PFAM: Mur ligase, central YP_004317449.1 KEGG: phe:Phep_1167 hypothetical protein YP_004317450.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: phe:Phep_1168 biopolymer transporter ExbD/TolR YP_004317451.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: phe:Phep_1169 MotA/TolQ/ExbB proton channel YP_004317452.1 PFAM: sporulation-related domain; KEGG: pru:PRU_1314 hypothetical protein YP_004317453.1 PFAM: TonB-dependent receptor, beta-barrel; KEGG: phe:Phep_1171 hypothetical protein YP_004317454.1 PFAM: Tetratricopeptide TPR-1; KEGG: phe:Phep_1172 tetratricopeptide domain protein YP_004317455.1 PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; TIGRFAM: aspartate carbamoyltransferase, eukaryotic; HAMAP: aspartate carbamoyltransferase, eukaryotic; KEGG: phe:Phep_1173 aspartate carbamoyltransferase catalytic subunit YP_004317456.1 KEGG: phe:Phep_1174 uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_004317457.1 KEGG: phe:Phep_0323 hypothetical protein YP_004317458.1 PFAM: Uncharacterised protein family, zinc metallopeptidase KEGG: sli:Slin_3317 protein of unknown function zinc metallopeptidase YP_004317459.1 SMART: PUR-alpha/beta/gamma, DNA/RNA-binding; KEGG: phe:Phep_1398 PUR-alpha/beta/gamma DNA/RNA-binding YP_004317460.1 KEGG: phe:Phep_1558 hypothetical protein YP_004317461.1 KEGG: dfe:Dfer_1208 aconitate hydratase; TIGRFAM: Aconitase, mitochondrial-like; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004317462.1 PFAM: acetyl-CoA carboxylase, subunit alpha; TIGRFAM: acetyl-CoA carboxylase, subunit alpha; HAMAP: acetyl-CoA carboxylase, alpha subunit; KEGG: phe:Phep_0580 acetyl-CoA carboxylase, carboxyl transferase, subunit alpha YP_004317463.1 KEGG: tet:TTHERM_00408880 cytochrome P450 family protein YP_004317464.1 PFAM: GMP synthase, C-terminal; glutamine amidotransferase class-I, C-terminal; tRNA-specific 2-thiouridylase; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; HAMAP: GMP synthase; KEGG: phe:Phep_0993 GMP synthase YP_004317465.1 KEGG: phe:Phep_0994 hypothetical protein YP_004317466.1 PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; KEGG: phe:Phep_0995 Fmu (Sun) domain protein YP_004317467.1 PFAM: Cation/H+ exchanger; KEGG: dfe:Dfer_5097 sodium/hydrogen exchanger YP_004317468.1 PFAM: Multiple antibiotic resistance (MarC)-related; KEGG: phe:Phep_0996 multiple antibiotic resistance (MarC)-related protein YP_004317469.1 PFAM: Amino acid permease domain; KEGG: chu:CHU_3581 amino acid transporter YP_004317470.1 PFAM: Pyrophosphate-energised proton pump; TIGRFAM: Pyrophosphate-energised proton pump; HAMAP: Pyrophosphate-energised proton pump; KEGG: phe:Phep_1001 membrane-bound proton-translocating pyrophosphatase YP_004317471.1 KEGG: pyo:PY07045 hypothetical protein YP_004317472.1 PFAM: Amino acid permease domain; KEGG: fjo:Fjoh_1961 amino acid permease-associated region YP_004317473.1 KEGG: sli:Slin_1689 DNA uptake protein and related DNA-binding protein-like protein YP_004317474.1 TIGRFAM: adenine phosphoribosyl transferase; HAMAP: adenine phosphoribosyl transferase; KEGG: phe:Phep_0836 adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_004317475.1 KEGG: ccb:Clocel_2179 hypothetical protein YP_004317476.1 KEGG: phe:Phep_0837 acyl-CoA dehydrogenase domain protein; PFAM: acyl-CoA oxidase/dehydrogenase, type 1; acyl-CoA dehydrogenase, N-terminal; acyl-CoA oxidase/dehydrogenase, central domain YP_004317477.1 PFAM: malate:quinone-oxidoreductase; TIGRFAM: malate:quinone-oxidoreductase; KEGG: cpi:Cpin_2378 malate:quinone oxidoreductase; HAMAP: malate:quinone-oxidoreductase YP_004317478.1 KEGG: zpr:ZPR_4698 ROK family transcriptional repressor protein; PFAM: ROK YP_004317479.1 KEGG: lby:Lbys_1414 hypothetical protein YP_004317480.1 KEGG: fba:FIC_02296 hypothetical protein YP_004317481.1 KEGG: aga:AgaP_AGAP003459 AGAP003459-PA YP_004317482.1 KEGG: dfe:Dfer_1112 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004317483.1 KEGG: lby:Lbys_1797 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004317484.1 KEGG: sli:Slin_5021 adenylate/guanylate cyclase; PFAM: Signal transduction response regulator, receiver domain; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: Signal transduction response regulator, receiver domain; adenylyl cyclase class-3/4/guanylyl cyclase YP_004317485.1 PFAM: protein of unknown function DUF161; Domain of unknown function DUF2179; KEGG: lby:Lbys_1278 metal dependent phosphohydrolase YP_004317486.1 SMART: metal-dependent phosphohydrolase, HD domain; KEGG: lby:Lbys_1278 metal dependent phosphohydrolase YP_004317487.1 KEGG: phe:Phep_0922 hypothetical protein YP_004317488.1 KEGG: phe:Phep_2847 hypothetical protein YP_004317489.1 KEGG: phe:Phep_1381 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004317491.1 PFAM: FecR protein; KEGG: pdi:BDI_2470 anti-sigma factor YP_004317492.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: phe:Phep_1383 TonB-dependent receptor plug YP_004317493.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_1765 RagB/SusD domain protein YP_004317494.1 KEGG: phe:Phep_2719 hypothetical protein YP_004317495.1 KEGG: cpi:Cpin_3797 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004317496.1 KEGG: cpi:Cpin_3384 hypothetical protein YP_004317497.1 KEGG: phe:Phep_1518 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004317498.1 KEGG: phe:Phep_1516 proline dehydrogenase; PFAM: Proline dehydrogenase YP_004317499.1 KEGG: phe:Phep_1515 RNA-binding S4 domain protein YP_004317500.1 PFAM: 3-dehydroquinate synthase AroB; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; HAMAP: 3-dehydroquinate synthase AroB, subgroup; KEGG: phe:Phep_1514 3-dehydroquinate synthase YP_004317501.1 KEGG: cpi:Cpin_7276 Crp/FNR family transcriptional regulator YP_004317502.1 KEGG: phe:Phep_3429 threonine dehydratase; TIGRFAM: threonine dehydratase; PFAM: pyridoxal phosphate-dependent enzyme, beta subunit; threonine dehydratase, C-terminal YP_004317503.1 PFAM: isocitrate/isopropylmalate dehydrogenase; TIGRFAM: Isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; KEGG: phe:Phep_3428 3-isopropylmalate dehydrogenase YP_004317504.1 PFAM: pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; KEGG: phe:Phep_3427 pyruvate carboxyltransferase; SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YP_004317505.1 KEGG: phe:Phep_3426 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004317506.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit; HAMAP: 3-isopropylmalate dehydratase, large subunit; KEGG: phe:Phep_3425 isopropylmalate isomerase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YP_004317507.1 SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase, bacterial type; KEGG: cpi:Cpin_1986 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YP_004317508.1 KEGG: phe:Phep_3423 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004317509.1 PFAM: acetohydroxy acid isomeroreductase C-terminal; acetohydroxy acid isomeroreductase, catalytic; TIGRFAM: acetohydroxy acid isomeroreductase; HAMAP: acetohydroxy acid isomeroreductase; KEGG: phe:Phep_3422 ketol-acid reductoisomerase YP_004317510.1 KEGG: phe:Phep_3421 hypothetical protein YP_004317511.1 KEGG: phe:Phep_3420 acetolactate synthase, small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Amino acid-binding ACT; acetolactate synthase, small subunit, C-terminal YP_004317512.1 PFAM: 23S rRNA-associated protein; KEGG: vcn:VOLCADRAFT_72165 hypothetical protein YP_004317513.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic; KEGG: phe:Phep_3419 acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; thiamine pyrophosphate enzyme, central domain; thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004317514.1 PFAM: dihydroxy-acid/6-phosphogluconate dehydratase; TIGRFAM: dihydroxy-acid dehydratase; HAMAP: dihydroxy-acid dehydratase; KEGG: phe:Phep_3418 dihydroxy-acid dehydratase YP_004317515.1 PFAM: ATPase, F1 complex, delta/subunit epsilon, N-terminal; KEGG: phe:Phep_3416 H+transporting two-sector ATPase delta/epsilon subunit YP_004317516.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, F1 complex subunit beta; KEGG: phe:Phep_3415 ATP synthase F1 beta subunit; HAMAP: ATPase, F1 complex subunit beta; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/subunit beta, C-terminal YP_004317518.1 PFAM: dTDP-4-dehydrorhamnose reductase; KEGG: phe:Phep_3414 dTDP-4-dehydrorhamnose reductase YP_004317519.1 TIGRFAM: Monofunctional biosynthetic peptidoglycan transglycosylase; HAMAP: Monofunctional biosynthetic peptidoglycan transglycosylase; KEGG: phe:Phep_0742 monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase, family 51 YP_004317520.1 KEGG: phe:Phep_0743 hypothetical protein YP_004317521.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: phe:Phep_0707 pseudouridine synthase YP_004317522.1 KEGG: chu:CHU_3230 hypothetical protein; HAMAP: Uncharacterised protein family UPF0365; PFAM: Band 7 protein YP_004317523.1 KEGG: phe:Phep_2815 SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter YP_004317524.1 PFAM: dihydrodipicolinate synthetase; KEGG: phe:Phep_2814 dihydrodipicolinate synthetase YP_004317525.1 KEGG: phe:Phep_2819 hypothetical protein YP_004317526.1 PFAM: glycoside hydrolase, family 28; KEGG: phe:Phep_2818 glycoside hydrolase 28 YP_004317527.1 KEGG: phe:Phep_2817 alpha-L-fucosidase; PFAM: glycoside hydrolase, family 2, carbohydrate-binding YP_004317528.1 KEGG: phe:Phep_2816 beta-galactosidase; PFAM: glycoside hydrolase, family 2, carbohydrate-binding; glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; glycoside hydrolase, family 2, TIM barrel YP_004317529.1 KEGG: phe:Phep_2811 hypothetical protein YP_004317530.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: fjo:Fjoh_4095 TonB-dependent receptor, plug YP_004317531.1 PFAM: RagB/SusD; KEGG: fjo:Fjoh_4094 RagB/SusD domain-containing protein YP_004317532.1 KEGG: cpi:Cpin_5754 conserved repeat domain protein YP_004317533.1 KEGG: phe:Phep_2795 hypothetical protein YP_004317534.1 KEGG: phe:Phep_2787 hypothetical protein YP_004317535.1 KEGG: phe:Phep_2786 hypothetical protein YP_004317536.1 KEGG: phe:Phep_2785 hypothetical protein YP_004317537.1 KEGG: phe:Phep_2784 hypothetical protein YP_004317538.1 KEGG: phe:Phep_2782 glycoside hydrolase 2 sugar binding; PFAM: glycoside hydrolase, family 2, carbohydrate-binding; glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; glycoside hydrolase, family 2, TIM barrel YP_004317539.1 PFAM: Bacterial alpha-L-rhamnosidase; Bacterial alpha-L-rhamnosidase N-terminal; KEGG: fjo:Fjoh_4080 alpha-L-rhamnosidase YP_004317540.1 KEGG: bth:BT_1017 hypothetical protein YP_004317541.1 KEGG: phe:Phep_2779 exported exo-alpha-sialidase YP_004317542.1 PFAM: acetyl xylan esterase; KEGG: phe:Phep_2778 hypothetical protein YP_004317543.1 PFAM: xylose isomerase, TIM barrel domain; KEGG: dfe:Dfer_2147 xylose isomerase domain protein TIM barrel YP_004317544.1 PFAM: glycoside hydrolase, family 28; KEGG: dfe:Dfer_0610 glycoside hydrolase 28 YP_004317545.1 KEGG: aas:Aasi_1294 hypothetical protein YP_004317546.1 KEGG: ccb:Clocel_3192 hypothetical protein YP_004317547.1 KEGG: fba:FIC_01022 oxidoreductase YP_004317548.1 TIGRFAM: DNA-binding protein, HU-related; KEGG: bfs:BF2786 hypothetical protein YP_004317549.1 PFAM: Bacterial alpha-L-rhamnosidase; Bacterial alpha-L-rhamnosidase N-terminal; KEGG: phe:Phep_2759 alpha-L-rhamnosidase YP_004317550.1 KEGG: phe:Phep_2758 hypothetical protein YP_004317551.1 KEGG: phe:Phep_2757 glycoside hydrolase 2 sugar binding; PFAM: glycoside hydrolase, family 2, carbohydrate-binding; glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; glycoside hydrolase, family 2, TIM barrel YP_004317552.1 PFAM: HTH transcriptional regulator, GntR; KEGG: phe:Phep_3881 regulatory protein GntR HTH YP_004317553.1 KEGG: cpi:Cpin_2736 hypothetical protein YP_004317554.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_2137 TonB-dependent receptor YP_004317555.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_2136 RagB/SusD domain protein YP_004317556.1 KEGG: phe:Phep_2820 hypothetical protein YP_004317557.1 KEGG: phe:Phep_2776 hypothetical protein YP_004317558.1 PFAM: oxidoreductase, N-terminal; KEGG: phe:Phep_2775 oxidoreductase domain protein YP_004317559.1 KEGG: phe:Phep_2774 SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter YP_004317560.1 PFAM: transposase, IS116/IS110/IS902; transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: fjo:Fjoh_2997 transposase IS116/IS110/IS902 family protein YP_004317561.1 PFAM: Bacterial alpha-L-rhamnosidase; KEGG: phe:Phep_2773 alpha-L-rhamnosidase YP_004317562.1 KEGG: fjo:Fjoh_4102 beta-galactosidase; PFAM: glycoside hydrolase, family 2, TIM barrel; glycoside hydrolase, family 2, carbohydrate-binding; glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; glycoside hydrolase, family 42, domain 5 YP_004317563.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: phe:Phep_2756 extracellular solute-binding protein family 1 YP_004317564.1 KEGG: phe:Phep_2755 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase III YP_004317565.1 KEGG: fjo:Fjoh_4124 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase III YP_004317566.1 KEGG: phe:Phep_2753 extracellular solute-binding protein family 1; manually curated; PFAM: Bacterial extracellular solute-binding, family 1 YP_004317567.1 PFAM: oxidoreductase, N-terminal; KEGG: phe:Phep_2752 oxidoreductase domain protein YP_004317568.1 PFAM: MaoC-like dehydratase; KEGG: fjo:Fjoh_4127 dehydratase YP_004317569.1 KEGG: fjo:Fjoh_4128 L-fucose transporter; TIGRFAM: L-fucose permease; PFAM: Major facilitator superfamily MFS-1 YP_004317570.1 PFAM: glycoside hydrolase, family 2, carbohydrate-binding; KEGG: phe:Phep_2749 glycoside hydrolase 2 sugar binding YP_004317571.1 PFAM: protein of unknown function DUF1680; KEGG: phe:Phep_2748 protein of unknown function DUF1680 YP_004317572.1 KEGG: phe:Phep_2743 sialate O-acetylesterase; PFAM: Domain of unknown function DUF303, acetylesterase YP_004317573.1 KEGG: phe:Phep_2742 hypothetical protein YP_004317574.1 TIGRFAM: ribosomal protein L9, bacteria/chloroplast; HAMAP: ribosomal protein L9, bacteria/chloroplast; KEGG: phe:Phep_0741 ribosomal protein L9; PFAM: ribosomal protein L9, N-terminal; ribosomal protein L9, C-terminal YP_004317575.1 TIGRFAM: ribosomal protein S18; HAMAP: ribosomal protein S18; KEGG: phe:Phep_0740 ribosomal protein S18; PFAM: ribosomal protein S18 YP_004317576.1 TIGRFAM: ribosomal protein S6; HAMAP: ribosomal protein S6, plastid/chloroplast; KEGG: phe:Phep_0739 ribosomal protein S6; PFAM: ribosomal protein S6 YP_004317577.1 TIGRFAM: DNA polymerase III subunit gamma/ tau; PFAM: ATPase, AAA-type, core; KEGG: phe:Phep_0736 DNA polymerase III subunits gamma/tau; SMART: ATPase, AAA+ type, core YP_004317578.1 KEGG: phe:Phep_0735 hypothetical protein YP_004317579.1 PFAM: 7TM-DISM receptor, extracellular domain, type 1; KEGG: cpi:Cpin_3587 diverse 7TM receptor transmembrane region YP_004317580.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: zpr:ZPR_4389 TonB-dependent receptor Plug domain protein YP_004317581.1 PFAM: RagB/SusD; KEGG: zpr:ZPR_4391 outer membrane protein YP_004317582.1 KEGG: cpi:Cpin_6736 glycoside hydrolase 30; PFAM: glycoside hydrolase, family 30 YP_004317583.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: phe:Phep_2405 OmpA/MotB domain protein YP_004317584.1 PFAM: cysteine-rich domain; KEGG: phe:Phep_0746 protein of unknown function DUF224 cysteine-rich region domain protein YP_004317585.1 KEGG: phe:Phep_0747 protein of unknown function DUF224 cysteine-rich region domain protein YP_004317586.1 KEGG: lby:Lbys_1961 peptidase S9 prolyl oligopeptidase active site domain protein YP_004317587.1 PFAM: NUDIX hydrolase domain; KEGG: cpi:Cpin_2521 NUDIX hydrolase YP_004317588.1 TIGRFAM: peptidase A8, signal peptidase II; HAMAP: peptidase A8, signal peptidase II; KEGG: dfe:Dfer_1207 lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II YP_004317589.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: phe:Phep_2127 short-chain dehydrogenase/reductase SDR; SMART: polyketide synthase/Fatty acid synthase, KR YP_004317590.1 PFAM: Helix-turn-helix, HxlR type; KEGG: phe:Phep_2126 helix-turn-helix HxlR type YP_004317591.1 PFAM: Natural resistance-associated macrophage protein; UspA; manually curated; TIGRFAM: Natural resistance-associated macrophage protein; KEGG: cpi:Cpin_6585 Mn2+/Fe2+ transporter NRAMP family; HAMAP: Manganese transporter MntH YP_004317593.1 PFAM: Copper resistance lipoprotein NlpE; KEGG: acd:AOLE_14295 copper homeostasis protein CutF precursor (lipoprotein NlpE) YP_004317594.1 KEGG: sli:Slin_6634 nb031; nematoblast specific protein YP_004317595.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_1583 RagB/SusD domain protein YP_004317596.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: zpr:ZPR_4389 TonB-dependent receptor Plug domain protein YP_004317597.1 HAMAP: thymidine kinase, subgroup; KEGG: phe:Phep_0802 thymidine kinase; PFAM: thymidine kinase YP_004317598.1 KEGG: phe:Phep_0803 hypothetical protein YP_004317599.1 KEGG: phe:Phep_0804 rod shape-determining protein RodA; TIGRFAM: Rod shape-determining protein RodA; PFAM: cell cycle protein YP_004317600.1 TIGRFAM: Penicillin-binding protein 2; KEGG: phe:Phep_0805 penicillin-binding protein 2; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; Chromogranin/secretogranin YP_004317601.1 KEGG: phe:Phep_0806 rod shape-determining protein MreD; manually curated; TIGRFAM: cell shape-determining protein MreD YP_004317602.1 PFAM: Rod shape-determining protein MreC; KEGG: phe:Phep_0807 rod shape-determining protein MreC YP_004317603.1 KEGG: phe:Phep_0808 rod shape-determining protein MreB; TIGRFAM: cell shape determining protein MreB/Mrl; PFAM: cell shape determining protein MreB/Mrl YP_004317604.1 KEGG: phe:Phep_1887 transglutaminase YP_004317605.1 KEGG: phe:Phep_1886 hypothetical protein YP_004317606.1 SMART: AICARFT/IMPCHase bienzyme, transformylase domain; methylglyoxal synthase-like domain; TIGRFAM: AICARFT/IMPCHase bienzyme; KEGG: phe:Phep_0809 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; methylglyoxal synthase-like domain YP_004317607.1 PFAM: Alkyl hydroperoxide reductase subunit C/ thiol specific antioxidant; KEGG: phe:Phep_2456 hypothetical protein YP_004317608.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; KEGG: phe:Phep_0810 formyl transferase; PFAM: formyl transferase, N-terminal YP_004317609.1 KEGG: dfe:Dfer_1795 beta-lactamase; PFAM: beta-lactamase-related YP_004317610.1 KEGG: cpi:Cpin_6586 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain YP_004317611.1 PFAM: Signal transduction histidine kinase, internal region; ATPase-like, ATP-binding domain; KEGG: cpi:Cpin_6587 signal transduction histidine kinase, LytS YP_004317612.1 KEGG: phe:Phep_1539 hypothetical protein YP_004317613.1 PFAM: protein of unknown function DUF2329; KEGG: pdi:BDI_3064 hypothetical protein YP_004317614.1 PFAM: protein of unknown function DUF2490; KEGG: phe:Phep_3713 hypothetical protein YP_004317615.1 PFAM: general substrate transporter; KEGG: phe:Phep_3393 metabolite/H+ symporter, major facilitator superfamily (MFS) YP_004317616.1 KEGG: ath:AT1G21210 WAK4 (wall associated kinase 4); ATP binding / calcium ion binding / protein kinase/ protein serine/threonine kinase YP_004317617.1 KEGG: rbi:RB2501_10457 hypothetical protein YP_004317618.1 TIGRFAM: ribosomal protein S21; HAMAP: ribosomal protein S21; KEGG: phe:Phep_0839 ribosomal protein S21; PFAM: ribosomal protein S21 YP_004317619.1 KEGG: mhr:MHR_0033 cytosine-specific methyltransferase YP_004317620.1 SMART: Helix-turn-helix type 3; KEGG: pdi:BDI_0844 hypothetical protein YP_004317621.1 KEGG: phe:Phep_0840 integrase; HAMAP: Tyrosine recombinase xerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004317622.1 KEGG: phe:Phep_0841 ribosomal subunit interface protein; TIGRFAM: ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: ribosomal protein S30Ae/sigma 54 modulation protein YP_004317623.1 KEGG: phe:Phep_0842 elongation factor Tu; TIGRFAM: translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFTu/EF1A, C-terminal YP_004317624.1 manually curated; TIGRFAM: SecE subunit of protein translocation complex; KEGG: phe:Phep_0843 preprotein translocase, SecE subunit; PFAM: protein SecE/Sec61-gamma protein YP_004317625.1 TIGRFAM: transcription antitermination protein, NusG; PFAM: transcription antitermination protein, NusG, N-terminal; KOW; KEGG: phe:Phep_0844 transcription termination/antitermination factor NusG; SMART: transcription antitermination protein, NusG, N-terminal; KOW YP_004317626.1 TIGRFAM: ribosomal protein L11, bacterial-type; PFAM: ribosomal protein L11, C-terminal domain; ribosomal protein L11, N-terminal domain; KEGG: phe:Phep_0845 ribosomal protein L11; SMART: ribosomal protein L11 YP_004317627.1 KEGG: phe:Phep_0846 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1, bacterial-type; PFAM: ribosomal protein L1 YP_004317628.1 KEGG: phe:Phep_0847 ribosomal protein L10; HAMAP: ribosomal protein L10; PFAM: ribosomal protein L10/acidic P0 YP_004317629.1 TIGRFAM: ribosomal protein L7/L12; HAMAP: ribosomal protein L7/L12; KEGG: phe:Phep_0848 50S ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12, C-terminal YP_004317630.1 TIGRFAM: DNA-directed RNA polymerase subunit beta, bacterial-type; HAMAP: DNA-directed RNA polymerase subunit beta, bacterial-type; KEGG: phe:Phep_0849 DNA-directed RNA polymerase, beta subunit; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 2; RNA polymerase, subunit beta, protrusion; DNA-directed RNA polymerase subunit beta, external 1 domain; RNA polymerase Rpb2, domain 7 YP_004317631.1 SMART: RNA polymerase, N-terminal; TIGRFAM: DNA-directed RNA polymerase subunit beta-prime; KEGG: phe:Phep_0850 DNA-directed RNA polymerase, beta' subunit; HAMAP: DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5 YP_004317632.1 KEGG: phe:Phep_0851 hypothetical protein YP_004317633.1 KEGG: kol:Kole_1816 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: polyketide synthase/Fatty acid synthase, KR YP_004317634.1 PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: lysyl-tRNA synthetase, class II; HAMAP: lysyl-tRNA synthetase, class II; KEGG: phe:Phep_1559 lysyl-tRNA synthetase YP_004317635.1 KEGG: phe:Phep_0054 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004317636.1 KEGG: phe:Phep_0055 hypothetical protein YP_004317637.1 KEGG: lby:Lbys_1514 hypothetical protein YP_004317638.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: phe:Phep_1944 OmpA/MotB domain protein YP_004317639.1 KEGG: phe:Phep_0667 hypothetical protein YP_004317640.1 TIGRFAM: Pseudouridine synthase I, TruA; HAMAP: Pseudouridine synthase I, TruA; KEGG: phe:Phep_0668 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain YP_004317641.1 PFAM: ABC transporter-like; ABC transporter transmembrane domain; KEGG: phe:Phep_0669 ABC transporter; SMART: ATPase, AAA+ type, core YP_004317642.1 SMART: CoA-binding; TIGRFAM: Succinyl-CoA ligase, alpha subunit; KEGG: phe:Phep_0686 succinyl-CoA synthetase, subunit alpha; PFAM: CoA-binding; ATP-citrate lyase/succinyl-CoA ligase YP_004317643.1 TIGRFAM: methionine sulphoxide reductase B; KEGG: phe:Phep_0688 methionine sulfoxide reductase B; PFAM: methionine sulphoxide reductase B YP_004317644.1 KEGG: fjo:Fjoh_2032 alpha-1,2-mannosidase; TIGRFAM: alpha-1,2-mannosidase, PFAM: glycosyl hydrolase 92 YP_004317645.1 KEGG: cpi:Cpin_0736 lipoprotein A; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Barwin-related endoglucanase YP_004317646.1 KEGG: fjo:Fjoh_1311 hypothetical protein YP_004317647.1 PFAM: tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: phe:Phep_0852 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase YP_004317648.1 KEGG: phe:Phep_0853 hypothetical protein YP_004317649.1 SMART: metal-dependent phosphohydrolase, HD domain; TIGRFAM: Uncharacterised protein family HDIG; KEGG: phe:Phep_0854 polynucleotide adenylyltransferase region; PFAM: poly A polymerase, head domain; metal-dependent phosphohydrolase, HD subdomain YP_004317650.1 KEGG: rcu:RCOM_2069970 protein yrdC, TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal YP_004317651.1 PFAM: glycosyl transferase, group 1; KEGG: phe:Phep_0857 glycosyl transferase group 1 YP_004317652.1 KEGG: phe:Phep_0858 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_004317653.1 PFAM: glycosyl transferase, family 9; KEGG: fjo:Fjoh_1715 ADP-heptose:LPS heptosyltransferase-like protein YP_004317654.1 KEGG: fjo:Fjoh_2518 hypothetical protein YP_004317655.1 KEGG: aas:Aasi_0568 hypothetical protein; PFAM: phosphatidic acid phosphatase type 2/haloperoxidase; SMART: phosphatidic acid phosphatase type 2/haloperoxidase YP_004317656.1 KEGG: phe:Phep_0859 RNA-binding S4 domain protein; PFAM: RNA-binding S4; SMART: RNA-binding S4 YP_004317657.1 PFAM: glycosyl transferase, family 2; KEGG: dfe:Dfer_1546 glycosyl transferase 2 YP_004317658.1 PFAM: glycosyl transferase, family 2; KEGG: dfe:Dfer_1546 glycosyl transferase 2 YP_004317659.1 PFAM: glycosyl transferase, family 2; KEGG: cci:CC1G_15736 NAD-dependent epimerase/dehydratase YP_004317660.1 PFAM: glycosyl transferase, group 1; KEGG: phe:Phep_0151 glycosyl transferase group 1 YP_004317661.1 KEGG: sli:Slin_2579 hypothetical protein YP_004317662.1 PFAM: glycosyl transferase, family 2; glycosyl transferase, group 1; KEGG: cyj:Cyan7822_2162 family 2 glycosyl transferase YP_004317663.1 KEGG: dfe:Dfer_0313 hypothetical protein YP_004317664.1 KEGG: zpr:ZPR_1096 UDP-glycosyltransferase/glycogen phosphorylase YP_004317665.1 PFAM: FG-GAP; KEGG: gme:Gmet_2178 integrins alpha chain YP_004317666.1 KEGG: cps:CPS_3202 lipoprotein YP_004317667.1 KEGG: sca:Sca_1926 antiholin-like protein LrgB YP_004317668.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: phe:Phep_3481 OmpA/MotB domain protein YP_004317669.1 KEGG: cpi:Cpin_1887 hypothetical protein YP_004317670.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: cpi:Cpin_6733 TonB-dependent receptor YP_004317671.1 PFAM: ankyrin repeat; KEGG: fjo:Fjoh_0897 ankyrin YP_004317672.1 SMART: ankyrin repeat; KEGG: fjo:Fjoh_0898 ankyrin YP_004317673.1 KEGG: ppm:PPSC2_c3967 transmembrane protein YP_004317674.1 KEGG: cpi:Cpin_5816 hypothetical protein YP_004317675.1 PFAM: Male sterility, NAD-binding; KEGG: rpa:RPA2985 hypothetical protein YP_004317676.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: lby:Lbys_0806 transcriptional regulator, TetR family YP_004317677.1 KEGG: lby:Lbys_0802 hypothetical protein YP_004317678.1 KEGG: cpi:Cpin_5792 hypothetical protein YP_004317679.1 KEGG: sli:Slin_2445 hypothetical protein YP_004317680.1 KEGG: phe:Phep_0065 hypothetical protein YP_004317681.1 PFAM: Domain of unknown function DUF306, Meta/HslJ; KEGG: fjo:Fjoh_4760 protein of unknown function DUF306, MetA and HslJ YP_004317682.1 KEGG: cpi:Cpin_0887 hypothetical protein YP_004317683.1 KEGG: phe:Phep_0861 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SMART: Outer membrane chaperone Skp (OmpH) YP_004317684.1 SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; TIGRFAM: DNA gyrase subunit B; KEGG: phe:Phep_0862 DNA gyrase B subunit; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal YP_004317685.1 KEGG: oih:OB0923 hypothetical protein YP_004317686.1 TIGRFAM: valyl-tRNA synthetase; HAMAP: valyl-tRNA synthetase; KEGG: phe:Phep_1244 valyl-tRNA synthetase YP_004317687.1 KEGG: brm:Bmur_1990 hypothetical protein YP_004317688.1 PFAM: Restriction endonuclease, type I, EcoRI, R subunit/type III, Res subunit, N-terminal; KEGG: phe:Phep_1250 protein of unknown function DUF450 YP_004317689.1 KEGG: phe:Phep_1251 DNA polymerase III delta subunit; TIGRFAM: DNA polymerase III subunit delta; PFAM: DNA polymerase III delta YP_004317690.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cpi:Cpin_2933 transcriptional regulator, TetR family YP_004317691.1 KEGG: phe:Phep_1448 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004317692.1 KEGG: phe:Phep_1449 hypothetical protein YP_004317693.1 KEGG: phe:Phep_1892 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; manually curated; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; GCN5-related N-acetyltransferase (GNAT) domain YP_004317694.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: phe:Phep_1893 Holliday junction DNA helicase RuvB; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal YP_004317695.1 KEGG: phe:Phep_2905 glycosyl transferase 2; PFAM: glycosyl transferase, family 2 YP_004317696.1 KEGG: fps:FP2338 proton-dependent di-tripeptide transporter; TIGRFAM: Amino acid/peptide transporter; PFAM: oligopeptide transporter YP_004317697.1 KEGG: sli:Slin_6185 peptidase S9B dipeptidylpeptidase IV domain protein; PFAM: peptidase S9B, dipeptidylpeptidase IV N-terminal; peptidase S9, prolyl oligopeptidase, catalytic domain YP_004317698.1 KEGG: phe:Phep_2902 hypothetical protein YP_004317699.1 TIGRFAM: thiolase; KEGG: phe:Phep_2901 acetyl-CoA acetyltransferase; PFAM: thiolase, N-terminal; thiolase, C-terminal YP_004317700.1 KEGG: gfo:GFO_2352 hypothetical protein YP_004317701.1 KEGG: dfe:Dfer_3657 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein YP_004317702.1 SMART: metal-dependent phosphohydrolase, HD domain; manually curated; TIGRFAM: Uncharacterised protein family HDIG; KEGG: phe:Phep_2900 metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD subdomain; metal-dependent phosphohydrolase, 7TM intracellular domain YP_004317703.1 KEGG: mms:mma_1574 hypothetical protein YP_004317704.1 PFAM: glycoside hydrolase, family 28; KEGG: dfe:Dfer_1529 glycoside hydrolase 28 YP_004317705.1 KEGG: fba:FIC_02299 hypothetical protein YP_004317706.1 PFAM: HTH transcriptional regulator, ArsR; KEGG: lby:Lbys_2268 transcriptional regulator YP_004317707.1 PFAM: Uncharacterised protein family, inner membrane CreD; KEGG: fbc:FB2170_01956 inner membrane protein YP_004317708.1 KEGG: dfe:Dfer_1427 hypothetical protein YP_004317709.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_1428 TonB-dependent receptor plug YP_004317710.1 PFAM: Helix-turn-helix, HxlR type; KEGG: cpi:Cpin_2703 HxlR family transcriptional regulator YP_004317711.1 PFAM: Flavodoxin-like fold; KEGG: cpi:Cpin_2702 NAD(P)H dehydrogenase (quinone) YP_004317712.1 KEGG: phe:Phep_1764 hypothetical protein YP_004317713.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: npu:Npun_R0931 GCN5-related N-acetyltransferase YP_004317714.1 KEGG: chu:CHU_1990 oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004317715.1 KEGG: sli:Slin_0485 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004317716.1 KEGG: cpi:Cpin_4373 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2 YP_004317717.1 PFAM: FecR protein; KEGG: cpi:Cpin_4825 anti-FecI sigma factor, FecR YP_004317718.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: lby:Lbys_0357 TonB-dependent receptor plug YP_004317719.1 PFAM: RagB/SusD; KEGG: lby:Lbys_0358 ragb/susd domain protein YP_004317720.1 KEGG: lby:Lbys_0359 hypothetical protein YP_004317721.1 KEGG: cpi:Cpin_3452 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2 YP_004317722.1 PFAM: FecR protein; KEGG: cpi:Cpin_5522 anti-FecI sigma factor, FecR YP_004317723.1 PFAM: TonB-dependent receptor, plug; KEGG: cpi:Cpin_5278 TonB-dependent receptor plug YP_004317724.1 KEGG: cpi:Cpin_5277 hypothetical protein YP_004317725.1 KEGG: cpi:Cpin_5276 hypothetical protein YP_004317726.1 manually curated; KEGG: cpi:Cpin_1766 hypothetical protein YP_004317727.1 KEGG: cpi:Cpin_1765 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004317728.1 KEGG: sbn:Sbal195_2817 hypothetical protein YP_004317729.1 KEGG: pca:Pcar_2283 3-phosphoserine phosphatase YP_004317730.1 PFAM: endonuclease I; KEGG: gwc:GWCH70_1505 endonuclease I YP_004317731.1 KEGG: aga:AgaP_AGAP010896 AGAP010896-PA YP_004317732.1 KEGG: cpi:Cpin_0090 hypothetical protein YP_004317733.1 KEGG: dfe:Dfer_2185 globin; PFAM: oxidoreductase FAD/NAD(P)-binding; Globin, subset; oxidoreductase, FAD-binding domain YP_004317734.1 manually curated; TIGRFAM: transcription regulator Rrf2; KEGG: dfe:Dfer_2184 Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family; PFAM: transcription regulator Rrf2 YP_004317736.1 KEGG: phe:Phep_2979 hypothetical protein YP_004317737.1 KEGG: phe:Phep_1470 hypothetical protein YP_004317738.1 KEGG: phe:Phep_1426 hypothetical protein YP_004317739.1 KEGG: phe:Phep_1427 hypothetical protein YP_004317740.1 PFAM: lipid A 3-O-deacylase-related; KEGG: lby:Lbys_0488 lipid a 3-O-deacylase-related protein YP_004317741.1 KEGG: phe:Phep_1429 permease YjgP/YjgQ family protein; manually curated; PFAM: Permease YjgP/YjgQ, predicted YP_004317742.1 PFAM: queuine/other tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; queuine/other tRNA-ribosyltransferase; HAMAP: queuine tRNA-ribosyltransferase; KEGG: phe:Phep_1430 queuine tRNA-ribosyltransferase YP_004317743.1 PFAM: glycosyl transferase, family 2; KEGG: phe:Phep_1431 glycosyl transferase 2 YP_004317744.1 TIGRFAM: rRNA small subunit methyltransferase G; HAMAP: rRNA small subunit methyltransferase G; KEGG: phe:Phep_1432 methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G YP_004317745.1 KEGG: phe:Phep_1433 DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A YP_004317746.1 manually curated; KEGG: phe:Phep_1860 hypothetical protein YP_004317747.1 KEGG: phe:Phep_1945 beta-lactamase; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004317748.1 PFAM: ABC transporter-like; ABC transporter transmembrane domain; KEGG: fjo:Fjoh_2815 ABC transporter; SMART: ATPase, AAA+ type, core YP_004317749.1 KEGG: phe:Phep_1861 hypothetical protein YP_004317750.1 PFAM: protein of unknown function DUF62; KEGG: phe:Phep_1862 protein of unknown function DUF62 YP_004317751.1 PFAM: PhoH-like protein; KEGG: phe:Phep_1863 PhoH family protein YP_004317752.1 HAMAP: SAICAR synthetase; KEGG: phe:Phep_1864 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase YP_004317753.1 KEGG: phe:Phep_1865 sulfate transporter/antisigma-factor antagonist STAS; TIGRFAM: anti-sigma factor antagonist; PFAM: Sulphate transporter/antisigma-factor antagonist STAS YP_004317754.1 TIGRFAM: ribonuclease Z; HAMAP: ribonuclease Z; KEGG: phe:Phep_1866 beta-lactamase; PFAM: beta-lactamase-like YP_004317755.1 PFAM: Mammalian cell entry-related; KEGG: phe:Phep_1867 mammalian cell entry related domain protein YP_004317756.1 KEGG: phe:Phep_1869 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin, catalytic; SMART: cell wall hydrolase/autolysin, catalytic YP_004317757.1 KEGG: phe:Phep_1869 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin, catalytic; SMART: cell wall hydrolase/autolysin, catalytic YP_004317758.1 KEGG: phe:Phep_1870 organic solvent tolerance protein OstA YP_004317759.1 TIGRFAM: Competence-induced protein CinA; CinA, C-terminal; PFAM: CinA, C-terminal; Molybdopterin binding; KEGG: phe:Phep_1871 competence/damage-inducible protein CinA; SMART: Molybdopterin binding YP_004317760.1 KEGG: phe:Phep_1872 catalytic domain of components of various dehydrogenase complexes; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004317761.1 KEGG: phe:Phep_3837 twin-arginine translocation protein, TatA/E family subunit; HAMAP: Twin-arginine translocation protein TatA/E; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106 YP_004317762.1 KEGG: phe:Phep_4177 RNA binding S1 domain protein; PFAM: Tex-like protein, N-terminal; ribosomal protein S1, RNA-binding domain; SMART: Resolvase, RNase H-like fold; RNA-binding domain, S1 YP_004317763.1 PFAM: Sodium:dicarboxylate symporter; KEGG: fba:FIC_01767 proton/glutamate symporter family protein YP_004317764.1 KEGG: phe:Phep_3068 hypothetical protein YP_004317765.1 KEGG: phe:Phep_3067 hypothetical protein YP_004317766.1 PFAM: ankyrin repeat; KEGG: phe:Phep_3066 ankyrin YP_004317767.1 KEGG: phe:Phep_0176 TonB-dependent receptor; TIGRFAM: Outer membrane insertion C-terminal signal, omp85; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004317768.1 KEGG: cpi:Cpin_0206 hypothetical protein YP_004317769.1 KEGG: cpi:Cpin_0205 hypothetical protein YP_004317770.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: cpi:Cpin_0204 TonB-dependent receptor YP_004317771.1 KEGG: seq:SZO_09620 hypothetical protein YP_004317772.1 TIGRFAM: Tyrosine recombinase XerD; HAMAP: Tyrosine recombinase xerC; KEGG: chu:CHU_2702 site-specific recombinase; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004317773.1 KEGG: fjo:Fjoh_0187 cupin 2 domain-containing protein YP_004317774.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: gym:GYMC10_4758 NAD-dependent epimerase/dehydratase YP_004317775.1 KEGG: ddi:DDB_G0280249 hypothetical protein YP_004317776.1 PFAM: Sel1-like; KWG Leptospira; KEGG: cpi:Cpin_3258 Sel1 domain protein repeat-containing protein YP_004317777.1 PFAM: metallo-dependent phosphatase; KEGG: sli:Slin_3398 metallophosphoesterase YP_004317778.1 KEGG: sli:Slin_1487 carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase YP_004317779.1 KEGG: cpi:Cpin_4933 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004317780.1 KEGG: chu:CHU_3533 two-component sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004317781.1 KEGG: chu:CHU_3531 hypothetical protein YP_004317782.1 KEGG: chu:CHU_3615 hypothetical protein YP_004317783.1 KEGG: bta:540500 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14) YP_004317784.1 KEGG: fba:FIC_01730 hypothetical protein YP_004317785.1 PFAM: integral membrane protein TerC; KEGG: fba:FIC_00440 TerC family integral membrane protein YP_004317786.1 PFAM: protein of unknown function DUF2260; KEGG: fjo:Fjoh_3834 hypothetical protein YP_004317787.1 KEGG: cpi:Cpin_4964 protein of unknown function DUF323; TIGRFAM: Conserved hypothetical protein CHP03440; PFAM: Sulphatase-modifying factor YP_004317788.1 PFAM: ABC-type glycine betaine transporter, substrate-binding domain; Binding-protein-dependent transporters inner membrane component; KEGG: cpi:Cpin_4963 binding-protein-dependent transport systems inner membrane component YP_004317789.1 PFAM: ABC transporter-like; KEGG: cpi:Cpin_4962 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004317790.1 KEGG: dfe:Dfer_1248 mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004317791.1 manually curated; KEGG: dfe:Dfer_2178 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase N-terminal YP_004317792.1 KEGG: dfe:Dfer_2238 PepSY-associated TM helix domain protein YP_004317793.1 KEGG: dfe:Dfer_2239 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004317794.1 KEGG: phe:Phep_2499 hypothetical protein YP_004317795.1 KEGG: phe:Phep_2788 hypothetical protein YP_004317796.1 KEGG: phe:Phep_2378 Na+/H+ antiporter; TIGRFAM: Na+/H+ exchanger, YjcE-like, bacteria; PFAM: Cation/H+ exchanger YP_004317797.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: ctc:CTC02186 homoserine/homoserine lactone efflux protein YP_004317798.1 KEGG: sli:Slin_2113 hypothetical protein YP_004317799.1 KEGG: phe:Phep_1702 DNA ligase D; TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain; DNA ligase D, 3'-phosphoesterase domain; DNA polymerase LigD, polymerase domain; PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; DNA primase, small subunit YP_004317801.1 KEGG: sli:Slin_3639 hypothetical protein YP_004317802.1 KEGG: fps:FP0040 hypothetical protein YP_004317803.1 PFAM: activator of Hsp90 ATPase homologue 1-like; KEGG: fjo:Fjoh_4690 hypothetical protein YP_004317804.1 KEGG: phe:Phep_3759 helix-turn-helix-domain containing protein AraC type; PFAM: HTH transcriptional regulator, AraC; ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004317805.1 PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; KEGG: mxa:MXAN_1554 Rieske family iron-sulfur cluster-binding protein YP_004317806.1 PFAM: protein of unknown function DUF1801; KEGG: phe:Phep_2410 hypothetical protein YP_004317807.1 KEGG: cpi:Cpin_3630 cobalamin synthesis protein P47K; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal YP_004317808.1 KEGG: cko:CKO_00926 hypothetical protein YP_004317809.1 KEGG: pat:Patl_3486 hypothetical protein YP_004317810.1 PFAM: ABC transporter-like; KEGG: phe:Phep_1447 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004317811.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: phe:Phep_1446 protein of unknown function DUF214 YP_004317812.1 KEGG: phe:Phep_1445 hypothetical protein YP_004317813.1 PFAM: alpha/beta hydrolase fold-1; KEGG: dfe:Dfer_0653 alpha/beta hydrolase fold protein YP_004317814.1 TIGRFAM: catalase-peroxidase haem; HAMAP: catalase-peroxidase haem; KEGG: cpi:Cpin_5378 catalase/peroxidase HPI; PFAM: Haem peroxidase plant/fungal/bacterial YP_004317815.1 KEGG: fjo:Fjoh_4320 MarR family transcriptional regulator; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004317816.1 KEGG: cpi:Cpin_6175 hypothetical protein YP_004317817.1 KEGG: phe:Phep_1247 efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004317818.1 KEGG: phe:Phep_1248 transporter hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004317819.1 KEGG: phe:Phep_1249 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004317820.1 KEGG: hba:Hbal_2963 barnase inhibitor YP_004317821.1 KEGG: eba:ebA833 glycosyl transferase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: glycosyl transferase, family 20; Sucrose-phosphate synthase YP_004317822.1 KEGG: sli:Slin_1206 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); PFAM: glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal; glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal YP_004317823.1 KEGG: cpi:Cpin_5363 ATP-dependent transcriptional regulator, MalT-like, LuxR family; PFAM: transcription regulator LuxR, C-terminal; SMART: transcription regulator LuxR, C-terminal YP_004317824.1 KEGG: cpi:Cpin_5362 hypothetical protein YP_004317825.1 KEGG: zpr:ZPR_1416 hypothetical protein YP_004317826.1 KEGG: fbc:FB2170_17021 hypothetical protein YP_004317827.1 KEGG: sid:M164_0943 hypothetical protein YP_004317828.1 KEGG: sli:Slin_3888 transcriptional regulator, TetR family YP_004317829.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: sli:Slin_0929 protein of unknown function DUF214 YP_004317830.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: fjo:Fjoh_4180 acetyltransferase-like protein YP_004317831.1 PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: phe:Phep_4059 pirin domain protein YP_004317832.1 PFAM: Cyclic nucleotide-binding domain; KEGG: phe:Phep_4057 cyclic nucleotide-binding YP_004317833.1 PFAM: NADPH-dependent FMN reductase; KEGG: phe:Phep_1216 NADPH-dependent FMN reductase YP_004317834.1 KEGG: phe:Phep_2797 regulatory protein DeoR; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004317835.1 PFAM: L-fucose isomerase-like, C-terminal; L-fucose isomerase, N-terminal-2; KEGG: phe:Phep_2798 L-fucose isomerase-like protein YP_004317836.1 KEGG: phe:Phep_2799 transketolase; PFAM: transketolase, N-terminal YP_004317837.1 PFAM: transketolase-like, pyrimidine-binding domain; transketolase, C-terminal; KEGG: dfe:Dfer_2126 transketolase domain protein; SMART: transketolase-like, pyrimidine-binding domain YP_004317838.1 PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: dfe:Dfer_2124 monosaccharide-transporting ATPase YP_004317839.1 PFAM: Uncharacterised conserved protein UCP033535, periplasmic lipoprotein; KEGG: dfe:Dfer_2123 hypothetical protein YP_004317840.1 PFAM: ABC transporter-like; KEGG: dfe:Dfer_2122 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004317841.1 PFAM: ABC transporter permease; KEGG: dfe:Dfer_2121 monosaccharide-transporting ATPase YP_004317842.1 KEGG: phe:Phep_2805 carbohydrate kinase FGGY; PFAM: carbohydrate kinase, FGGY, N-terminal; carbohydrate kinase, FGGY, C-terminal YP_004317843.1 PFAM: protein of unknown function DUF1223; KEGG: cpi:Cpin_3618 protein of unknown function DUF1223 YP_004317844.1 KEGG: cpi:Cpin_2707 NAD(P)H dehydrogenase (quinone); HAMAP: NADH-azoreductase, FMN-dependent; PFAM: Flavodoxin-like fold YP_004317845.1 PFAM: Helix-turn-helix, HxlR type; KEGG: sli:Slin_0941 HxlR family transcriptional regulator YP_004317846.1 PFAM: Major facilitator superfamily MFS-1; KEGG: fjo:Fjoh_3965 major facilitator transporter YP_004317847.1 KEGG: phe:Phep_3454 hypothetical protein YP_004317848.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: phe:Phep_3455 regulatory protein TetR YP_004317849.1 PFAM: RagB/SusD; KEGG: cpi:Cpin_7252 RagB/SusD domain protein YP_004317850.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: sli:Slin_0441 TonB-dependent receptor plug YP_004317851.1 KEGG: cpi:Cpin_6363 hypothetical protein YP_004317852.1 KEGG: fjo:Fjoh_4679 hypothetical protein YP_004317853.1 KEGG: fjo:Fjoh_4678 hypothetical protein YP_004317854.1 KEGG: fjo:Fjoh_4677 virion core protein (lumpy skin disease virus)-like protein YP_004317855.1 KEGG: cpi:Cpin_5155 hypothetical protein YP_004317856.1 KEGG: dfe:Dfer_2249 hypothetical protein YP_004317857.1 PFAM: sodium symporter; KEGG: fbc:FB2170_04530 transporter YP_004317858.1 KEGG: sli:Slin_6192 demethylmenaquinone methyltransferase-like protein YP_004317859.1 PFAM: mandelate racemase/muconate lactonizing enzyme, C-terminal; mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: sli:Slin_6193 mandelate racemase/muconate lactonizing protein; SMART: mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004317860.1 KEGG: sli:Slin_1008 aldehyde dehydrogenase; PFAM: aldehyde dehydrogenase domain YP_004317861.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: sli:Slin_1198 fumarylacetoacetate hydrolase YP_004317862.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_1103 TonB-dependent receptor plug YP_004317863.1 KEGG: dfe:Dfer_1104 hypothetical protein YP_004317864.1 KEGG: sli:Slin_2107 two component transcriptional regulator, AraC family; PFAM: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Two component regulator propeller; HTH transcriptional regulator, AraC; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Helix-turn-helix, AraC type, DNA binding domain YP_004317865.1 KEGG: bth:BT_4152 beta-galactosidase I; PFAM: glycoside hydrolase, family 42, N-terminal; beta-galactosidase trimerisation; beta-galactosidase C-terminal YP_004317866.1 KEGG: gym:GYMC10_3907 xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase, family 43 YP_004317867.1 KEGG: aca:ACP_0864 beta-galactosidase; PFAM: glycoside hydrolase, family 42, N-terminal; beta-galactosidase trimerisation YP_004317868.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: lby:Lbys_2321 TonB-dependent receptor plug YP_004317869.1 PFAM: RagB/SusD; KEGG: lby:Lbys_2322 ragb/susd domain protein YP_004317870.1 PFAM: glycoside hydrolase, family 43; KEGG: sli:Slin_1420 glycoside hydrolase 43 YP_004317871.1 KEGG: fjo:Fjoh_3877 hypothetical protein YP_004317872.1 KEGG: fba:FIC_01738 beta-xylosidase; PFAM: glycoside hydrolase, family 43 YP_004317873.1 PFAM: esterase; KEGG: sli:Slin_1407 esterase YP_004317874.1 KEGG: dfe:Dfer_0792 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Two component regulator three Y; Two component regulator propeller; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; HTH transcriptional regulator, AraC; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Helix-turn-helix, AraC type, DNA binding domain YP_004317875.1 PFAM: glycoside hydrolase, family 10; KEGG: zpr:ZPR_3039 endo-beta-1,4-xylanase; SMART: glycoside hydrolase, family 10 YP_004317876.1 PFAM: Domain of unknown function DUF303, acetylesterase ; glycoside hydrolase, family 2, carbohydrate-binding; KEGG: cob:COB47_0714 hypothetical protein YP_004317877.1 KEGG: sli:Slin_0353 xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase, family 43 YP_004317878.1 PFAM: RagB/SusD; KEGG: cpi:Cpin_4848 RagB/SusD domain protein YP_004317879.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: cpi:Cpin_4849 TonB-dependent receptor plug YP_004317880.1 PFAM: O-methyltransferase, family 3; KEGG: abb:ABBFA_002375 O-methyltransferase MdmC YP_004317881.1 PFAM: Domain of unknown function DUF296; KEGG: cti:RALTA_A1663 conserved hypothetical protein; exported protein YP_004317882.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: cpi:Cpin_6672 antibiotic biosynthesis monooxygenase YP_004317883.1 PFAM: Flavodoxin-like fold; KEGG: cpi:Cpin_6756 NAD(P)H dehydrogenase (quinone) YP_004317884.1 KEGG: cpi:Cpin_2831 outer membrane protein YP_004317885.1 KEGG: cpi:Cpin_2830 secretion protein HlyD YP_004317886.1 KEGG: cpi:Cpin_2829 hypothetical protein YP_004317887.1 KEGG: lmh:LMHCC_2091 beta-lactamase YP_004317888.1 PFAM: Redoxin; KEGG: phe:Phep_3386 redoxin domain protein YP_004317889.1 KEGG: cpi:Cpin_4009 glutamate carboxypeptidase II; PFAM: peptidase M28; Protease-associated domain, PA; transferrin receptor-like, dimerisation YP_004317890.1 KEGG: acd:AOLE_01115 transcriptional regulator (AraC-like) protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004317891.1 PFAM: Major facilitator superfamily MFS-1; KEGG: phe:Phep_2429 major facilitator superfamily MFS_1 YP_004317892.1 PFAM: beta-lactamase-like; KEGG: fjo:Fjoh_4699 Zn-dependent hydrolase of the beta-lactamase fold-like protein YP_004317893.1 KEGG: phe:Phep_3188 hypothetical protein YP_004317894.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_0558 TonB-dependent receptor plug YP_004317895.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_1455 TonB-dependent receptor plug YP_004317896.1 KEGG: fjo:Fjoh_2992 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004317897.1 KEGG: fjo:Fjoh_0231 addiction module antitoxin; TIGRFAM: Addiction module toxin, Txe/YoeB; PFAM: Plasmid stabilisation system YP_004317898.1 KEGG: phe:Phep_1819 hypothetical protein YP_004317899.1 PFAM: peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: cpi:Cpin_6243 peptidylprolyl isomerase FKBP-type YP_004317900.1 KEGG: wsu:WS0000 chromosomal replication initiation protein YP_004317901.1 KEGG: fjo:Fjoh_4039 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004317902.1 KEGG: pkn:PKH_102350 RNA polymerase I YP_004317903.1 KEGG: lby:Lbys_1016 nucleoside:proton symporter YP_004317904.1 HAMAP: Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: fjo:Fjoh_4642 molybdopterin-guanine dinucleotide biosynthesis protein A-like protein YP_004317905.1 KEGG: dfe:Dfer_2553 nucleoside-diphosphate-sugar pyrophosphorylase YP_004317906.1 KEGG: dfe:Dfer_2552 hypothetical protein YP_004317907.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dfe:Dfer_2551 CDP-alcohol phosphatidyltransferase YP_004317908.1 KEGG: dfe:Dfer_2550 hypothetical protein YP_004317909.1 KEGG: dfe:Dfer_2549 haloacid dehalogenase domain protein hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004317910.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: gtn:GTNG_3131 C4-dicarboxylate transporter YP_004317911.1 KEGG: sus:acid_2929 major facilitator transporter YP_004317912.1 PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; KEGG: sus:acid_2928 assimilatory nitrate reductase (NADH) subunit alpha apoprotein; SMART: Molybdopterin oxidoreductase, Fe4S4 domain YP_004317913.1 PFAM: 4Fe-4S binding domain; KEGG: sus:acid_2927 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004317914.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: sus:acid_2926 Rieske (2Fe-2S) domain-containing protein YP_004317915.1 KEGG: bcy:Bcer98_3417 hypothetical protein YP_004317916.1 KEGG: phe:Phep_3439 acetyltransferase YP_004317917.1 PFAM: glycoside hydrolase, family 18, catalytic domain; KEGG: fjo:Fjoh_4757 glycoside hydrolase; SMART: chitinase II YP_004317918.1 KEGG: phe:Phep_2278 hypothetical protein YP_004317919.1 KEGG: phe:Phep_2277 hypothetical protein YP_004317920.1 PFAM: Sulphate transporter; KEGG: cpi:Cpin_4452 sulfate transporter YP_004317921.1 KEGG: cpi:Cpin_1462 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004317922.1 PFAM: UspA; KEGG: phe:Phep_2459 UspA domain protein YP_004317923.1 KEGG: phe:Phep_0658 hypothetical protein YP_004317924.1 KEGG: ath:AT2G25770 hypothetical protein YP_004317925.1 KEGG: csh:Closa_3048 hypothetical protein YP_004317926.1 KEGG: tva:TVAG_055020 hypothetical protein YP_004317927.1 KEGG: bts:Btus_2819 LamB/YcsF family protein; HAMAP: Uncharacterised protein family UPF0271, LamB/YcsF; PFAM: Uncharacterised protein family UPF0271, LamB/YcsF YP_004317928.1 SMART: allophanate hydrolase subunit 2; TIGRFAM: allophanate hydrolase subunit 2; KEGG: bpf:BpOF4_10165 hypothetical protein; PFAM: allophanate hydrolase subunit 2 YP_004317929.1 TIGRFAM: Conserved hypothetical protein CHP00370; PFAM: allophanate hydrolase subunit 1; KEGG: bao:BAMF_0375 inhibitor of the autophosphorylation reaction of KinA; SMART: allophanate hydrolase subunit 1 YP_004317930.1 KEGG: nam:NAMH_0823 PvdS; TIGRFAM: polyphosphate kinase 2, PA0141; PFAM: polyphosphate kinase-2-related YP_004317931.1 PFAM: FAD dependent oxidoreductase; KEGG: dfe:Dfer_2257 hypothetical protein YP_004317932.1 PFAM: methyltransferase type 11; KEGG: bcl:ABC2970 S-adenosylmethionine (SAM)-dependent methyltransferase YP_004317933.1 PFAM: NUDIX hydrolase domain; KEGG: prw:PsycPRwf_1921 NUDIX hydrolase YP_004317934.1 KEGG: bth:BT_0924 hypothetical protein YP_004317935.1 PFAM: ABC transporter-like; KEGG: tte:TTE1863 ABC-type multidrug transporter, ATPase component; SMART: ATPase, AAA+ type, core YP_004317936.1 KEGG: bth:BT_0926 ABC-type transport, permease YP_004317937.1 PFAM: pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: fbc:FB2170_06030 predicted flavin-nucleotide-binding protein YP_004317938.1 PFAM: cytochrome C assembly protein; KEGG: cpi:Cpin_3781 cytochrome C biogenesis protein CcsB YP_004317939.1 KEGG: slo:Shew_2132 hypothetical protein YP_004317940.1 KEGG: bhy:BHWA1_00368 hypothetical protein YP_004317941.1 PFAM: methylpurine-DNA glycosylase (MPG); TIGRFAM: methylpurine-DNA glycosylase (MPG); HAMAP: methylpurine-DNA glycosylase (MPG); KEGG: phe:Phep_2041 DNA-3-methyladenine glycosylase YP_004317942.1 KEGG: cpi:Cpin_2411 ATPase AAA YP_004317943.1 PFAM: patatin/phospholipase A2-related; KEGG: zpr:ZPR_2658 patatin-like phospholipase YP_004317944.1 PFAM: protein of unknown function DUF2272; KEGG: ccs:CCNA_02831 hypothetical protein YP_004317945.1 KEGG: fps:FP1554 hypothetical protein YP_004317946.1 KEGG: cpi:Cpin_0572 hypothetical protein YP_004317947.1 KEGG: pcr:Pcryo_1772 hypothetical protein YP_004317948.1 KEGG: phe:Phep_1367 hypothetical protein YP_004317949.1 PFAM: UspA; KEGG: cpi:Cpin_5529 UspA domain protein YP_004317950.1 PFAM: DinB; KEGG: fjo:Fjoh_0790 DinB family protein YP_004317951.1 KEGG: fjo:Fjoh_0788 helix-turn-helix, type 11 domain-containing protein YP_004317952.1 PFAM: methyltransferase type 11; KEGG: bfs:BF1671 hypothetical protein YP_004317953.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: phe:Phep_3155 regulatory protein TetR YP_004317954.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: phe:Phep_3154 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004317955.1 KEGG: nfi:NFIA_055700 patched sphingolipid transporter (Ncr1) YP_004317956.1 KEGG: sli:Slin_0431 hypothetical protein YP_004317957.1 PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; KEGG: sli:Slin_0437 oxidoreductase domain protein YP_004317958.1 KEGG: phe:Phep_2228 regulatory protein GntR HTH; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR YP_004317959.1 KEGG: phe:Phep_3212 hypothetical protein YP_004317960.1 KEGG: cpi:Cpin_2651 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004317961.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: cpi:Cpin_5800 peptidyl-dipeptidase DCP YP_004317962.1 KEGG: pfh:PFHG_03880 conserved hypothetical protein YP_004317963.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: cpi:Cpin_1777 TonB-dependent receptor plug YP_004317964.1 PFAM: RagB/SusD; KEGG: cpi:Cpin_1778 RagB/SusD domain protein YP_004317965.1 KEGG: cpi:Cpin_1779 carbohydrate binding family 6 YP_004317966.1 KEGG: cpi:Cpin_1780 hypothetical protein YP_004317967.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: cpi:Cpin_1781 TonB-dependent receptor plug YP_004317968.1 PFAM: RagB/SusD; KEGG: cpi:Cpin_1782 RagB/SusD domain protein YP_004317969.1 KEGG: cpi:Cpin_1783 hypothetical protein YP_004317970.1 KEGG: cpi:Cpin_1784 hypothetical protein YP_004317971.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; KEGG: cpi:Cpin_1785 type I phosphodiesterase/nucleotide pyrophosphatase YP_004317972.1 PFAM: Coagulation factor 5/8 type, C-terminal; KEGG: cpi:Cpin_1786 hypothetical protein YP_004317973.1 KEGG: zpr:ZPR_2155 ATP/GTP-binding protein; PFAM: PKD domain; Coagulation factor 5/8 type, C-terminal; SMART: PKD/chitinase domain YP_004317974.1 KEGG: phe:Phep_0226 hypothetical protein YP_004317975.1 PFAM: SNARE associated Golgi protein; KEGG: cpi:Cpin_1653 SNARE associated Golgi protein YP_004317976.1 PFAM: Helix-turn-helix, HxlR type; KEGG: dfe:Dfer_1416 HxlR family transcriptional regulator YP_004317977.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: sli:Slin_4718 aldo/keto reductase YP_004317978.1 PFAM: Ureohydrolase; KEGG: fjo:Fjoh_4687 arginase/agmatinase/formiminoglutamase YP_004317979.1 KEGG: llo:LLO_4096 hypothetical protein YP_004317980.1 KEGG: cpi:Cpin_7040 peptidase M14, carboxypeptidase A; PFAM: peptidase M14, carboxypeptidase A; SMART: peptidase M14, carboxypeptidase A YP_004317981.1 KEGG: cpi:Cpin_6568 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2 YP_004317982.1 PFAM: PQQ-dependent enzyme, N-terminal; pyrrolo-quinoline quinone repeat; PQQ-dependent enzyme, C-terminal; KEGG: sli:Slin_3953 quinoprotein glucose dehydrogenase; SMART: pyrrolo-quinoline quinone beta-propeller repeat YP_004317983.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_1103 TonB-dependent receptor plug YP_004317984.1 KEGG: dfe:Dfer_1104 hypothetical protein YP_004317985.1 KEGG: dfe:Dfer_1106 mandelate racemase/muconate lactonizing protein; PFAM: mandelate racemase/muconate lactonizing enzyme, N-terminal; SMART: mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004317986.1 PFAM: FecR protein; KEGG: cpi:Cpin_7183 anti-FecI sigma factor, FecR YP_004317987.1 KEGG: dfe:Dfer_1105 demethylmenaquinone methyltransferase-like protein YP_004317988.1 KEGG: sli:Slin_0455 hypothetical protein YP_004317989.1 PFAM: Major facilitator superfamily MFS-1; KEGG: gtn:GTNG_1487 2-ketogluconate transporter YP_004317990.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: phe:Phep_0464 TonB-dependent receptor plug YP_004317991.1 KEGG: fjo:Fjoh_0927 hypothetical protein YP_004317992.1 PFAM: nickel transport complex, NikM subunit, transmembrane; KEGG: dfe:Dfer_1309 hypothetical protein YP_004317993.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: rba:RB5820 L-fucose dehydrogenase YP_004317994.1 KEGG: phe:Phep_3968 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004317995.1 PFAM: FecR protein; KEGG: phe:Phep_1501 FecR protein YP_004317996.1 KEGG: dfe:Dfer_2116 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SMART: Secretin/TonB, short N-terminal YP_004317997.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_2115 RagB/SusD domain protein YP_004317998.1 PFAM: glycosyl hydrolase, family 88; KEGG: cpi:Cpin_6823 glycosyl hydrolase 88 YP_004317999.1 KEGG: phe:Phep_1374 2OG-Fe(II) oxygenase YP_004318000.1 TIGRFAM: methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; HTH transcriptional regulator, AraC; KEGG: phe:Phep_0721 methylated-DNA/protein-cysteine methyltransferase; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004318001.1 KEGG: cat:CA2559_03205 alpha/beta superfamily hydrolase YP_004318002.1 KEGG: cpi:Cpin_4554 hypothetical protein YP_004318003.1 KEGG: cpi:Cpin_4555 hypothetical protein YP_004318004.1 KEGG: ddi:DDB_G0295765 type A von Willebrand factor domain-containing protein YP_004318005.1 PFAM: Major facilitator superfamily MFS-1; KEGG: cpi:Cpin_4807 major facilitator superfamily MFS_1 YP_004318006.1 KEGG: cpi:Cpin_6858 transcriptional regulator, AsnC family; PFAM: transcription regulator AsnC-type, C-terminal; LexA, DNA-binding domain; SMART: transcription regulator AsnC-type YP_004318007.1 KEGG: har:HEAR0592 hypothetical protein YP_004318008.1 KEGG: phe:Phep_3510 Na+/H+ antiporter; TIGRFAM: Na+/H+ exchanger, YjcE-like, bacteria; PFAM: Cation/H+ exchanger YP_004318009.1 PFAM: activator of Hsp90 ATPase homologue 1-like; KEGG: lby:Lbys_0112 activator of HSP90 ATPase 1 family protein YP_004318010.1 PFAM: activator of Hsp90 ATPase homologue 1-like; KEGG: mes:Meso_4050 activator of HSP90 ATPase-like protein YP_004318011.1 KEGG: dfe:Dfer_5395 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004318012.1 KEGG: dfe:Dfer_1268 hypothetical protein YP_004318013.1 KEGG: dfe:Dfer_1358 metallo-hydrolase/oxidoreductase YP_004318014.1 PFAM: metallo-dependent phosphatase; KEGG: cpi:Cpin_5228 metallophosphoesterase YP_004318015.1 KEGG: ptm:GSPATT00027911001 hypothetical protein YP_004318016.1 KEGG: rsa:RSal33209_2702 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_004318017.1 KEGG: zpr:ZPR_0717 beta-lactamase OXA-20; PFAM: Penicillin-binding protein, transpeptidase YP_004318018.1 KEGG: fjo:Fjoh_3073 hypothetical protein YP_004318019.1 TIGRFAM: Secretion protein HlyD; KEGG: fjo:Fjoh_3072 RND family efflux transporter MFP subunit YP_004318020.1 KEGG: phe:Phep_3051 hypothetical protein YP_004318021.1 KEGG: fjo:Fjoh_3070 outer membrane protein-like protein YP_004318022.1 PFAM: Acriflavin resistance protein; KEGG: phe:Phep_3053 heavy metal efflux pump, CzcA family YP_004318023.1 PFAM: Acriflavin resistance protein; KEGG: phe:Phep_3054 heavy metal efflux pump, CzcA family YP_004318024.1 manually curated; KEGG: phe:Phep_3056 hypothetical protein YP_004318025.1 KEGG: phe:Phep_3711 peptidase S15; TIGRFAM: CocE/NonD hydrolase; SMART: peptidase S15/CocE/NonD, C-terminal YP_004318026.1 KEGG: bfs:BF0195 hypothetical protein YP_004318027.1 manually curated; KEGG: bfr:BF0237 HSP90 family protein YP_004318028.1 PFAM: Sel1-like; KEGG: bfs:BF0193 hypothetical protein YP_004318029.1 TIGRFAM: RNA polymerase sigma-70; KEGG: phe:Phep_2691 RNA polymerase sigma factor, sigma-70 family YP_004318030.1 KEGG: phe:Phep_2690 hypothetical protein YP_004318031.1 HAMAP: peptidase S14, ClpP; KEGG: phe:Phep_3081 endopeptidase Clp; PFAM: peptidase S14, ClpP YP_004318032.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: phe:Phep_1949 hypothetical protein YP_004318033.1 KEGG: phe:Phep_0899 hypothetical protein YP_004318034.1 PFAM: methyltransferase type 11; KEGG: fjo:Fjoh_4620 methyltransferase type 11 YP_004318035.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: fjo:Fjoh_4621 LysR family transcriptional regulator YP_004318036.1 PFAM: Uncharacterised conserved protein UCP028846; KEGG: zpr:ZPR_2158 six-hairpin glycosidase-like protein YP_004318037.1 PFAM: Cupin 2, conserved barrel; KEGG: cro:ROD_28851 pectin degradation protein YP_004318038.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: sli:Slin_1326 GCN5-related N-acetyltransferase YP_004318039.1 PFAM: GtrA-like protein; KEGG: phe:Phep_1472 GtrA family protein YP_004318040.1 PFAM: glycosyl transferase, family 39; KEGG: dfe:Dfer_1293 glycosyl transferase 39 YP_004318041.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: dal:Dalk_4339 GCN5-related N-acetyltransferase YP_004318042.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: phe:Phep_0475 transcriptional coactivator/pterin dehydratase YP_004318043.1 KEGG: phe:Phep_2257 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004318044.1 KEGG: cpi:Cpin_3576 transporter hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004318045.1 KEGG: phe:Phep_2259 efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004318046.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: phe:Phep_2260 regulatory protein TetR YP_004318048.1 PFAM: NLP/P60; KEGG: phe:Phep_3275 NLP/P60 protein YP_004318049.1 PFAM: carbohydrate/purine kinase; KEGG: cpi:Cpin_3268 PfkB domain protein YP_004318050.1 KEGG: dfe:Dfer_2829 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004318051.1 PFAM: FecR protein; KEGG: cpi:Cpin_3977 anti-FecI sigma factor, FecR YP_004318052.1 KEGG: dfe:Dfer_4708 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; SMART: Secretin/TonB, short N-terminal YP_004318053.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_4709 RagB/SusD domain protein YP_004318054.1 KEGG: dfe:Dfer_4710 xanthan lyase YP_004318055.1 PFAM: Mechanosensitive ion channel MscS; KEGG: chu:CHU_2162 periplasmic binding protein; mechanosensitive ion channel component YP_004318056.1 KEGG: dfe:Dfer_4494 transcriptional regulator, LacI family; PFAM: HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004318057.1 PFAM: oxidoreductase, N-terminal; KEGG: dfe:Dfer_4493 oxidoreductase domain protein YP_004318058.1 KEGG: bth:BT_3608 hypothetical protein YP_004318059.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: sli:Slin_4042 TonB-dependent receptor YP_004318060.1 PFAM: RagB/SusD; KEGG: fjo:Fjoh_4433 RagB/SusD domain-containing protein YP_004318061.1 PFAM: oxidoreductase, N-terminal; KEGG: phe:Phep_1695 oxidoreductase domain protein YP_004318062.1 KEGG: phe:Phep_1696 glucose/galactose transporter; TIGRFAM: Bacterial glucose/galactose transporter; PFAM: Major facilitator superfamily MFS-1 YP_004318063.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: phe:Phep_1698 N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase 1 YP_004318064.1 PFAM: transposase, IS4-like; KEGG: bth:BT_2222 transposase YP_004318065.1 PFAM: FAD dependent oxidoreductase; KEGG: sli:Slin_0454 glucose-methanol-choline oxidoreductase YP_004318066.1 KEGG: phe:Phep_2919 quinoprotein glucose dehydrogenase YP_004318067.1 PFAM: Lipase, GDSL; KEGG: cpi:Cpin_3980 lipolytic protein G-D-S-L family YP_004318068.1 PFAM: oxidoreductase, N-terminal; KEGG: rba:RB9026 NADH-dependent dyhydrogenase YP_004318069.1 KEGG: phe:Phep_1692 L-alanine-DL-glutamate epimerase YP_004318070.1 PFAM: dihydrodipicolinate synthetase; KEGG: phe:Phep_1691 hypothetical protein YP_004318071.1 KEGG: phe:Phep_1690 NAD-dependent epimerase/dehydratase YP_004318072.1 PFAM: Natural resistance-associated macrophage protein; KEGG: phe:Phep_1689 natural resistance-associated macrophage protein YP_004318073.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_0773 RagB/SusD domain protein YP_004318074.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_1584 TonB-dependent receptor plug YP_004318075.1 PFAM: heat shock protein Hsp20; KEGG: cpi:Cpin_6319 heat shock protein HSP20 YP_004318076.1 PFAM: glycoside hydrolase, family 65, central catalytic; KEGG: sus:acid_0535 hypothetical protein YP_004318077.1 KEGG: phe:Phep_2703 alpha-L-fucosidase; PFAM: glycoside hydrolase, family 29; SMART: glycoside hydrolase, family 29 YP_004318078.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_1858 TonB-dependent receptor plug YP_004318079.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_1857 RagB/SusD domain protein YP_004318080.1 KEGG: phe:Phep_2693 alpha-L-fucosidase; PFAM: glycoside hydrolase, family 29; SMART: glycoside hydrolase, family 29 YP_004318081.1 KEGG: phe:Phep_2700 beta-galactosidase; PFAM: glycoside hydrolase, family 2, TIM barrel; glycoside hydrolase, family 2, carbohydrate-binding; glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich YP_004318082.1 KEGG: phe:Phep_2698 alpha-L-fucosidase YP_004318083.1 KEGG: phe:Phep_2697 glycoside hydrolase 31; PFAM: glycoside hydrolase, family 31 YP_004318084.1 KEGG: phe:Phep_2696 hypothetical protein YP_004318085.1 KEGG: phe:Phep_2695 alpha-L-fucosidase; PFAM: glycoside hydrolase, family 29; SMART: glycoside hydrolase, family 29 YP_004318086.1 PFAM: glycosyl hydrolase, family 88; KEGG: phe:Phep_2694 glycosyl hydrolase 88 YP_004318087.1 KEGG: lby:Lbys_1866 histidine kinase; PFAM: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Two component regulator three Y; Two component regulator propeller; HTH transcriptional regulator, AraC; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Helix-turn-helix, AraC type, DNA binding domain YP_004318088.1 KEGG: abc:ACICU_03463 oxidoreductase; PFAM: NADP-dependent oxidoreductase domain YP_004318089.1 KEGG: acd:AOLE_01115 transcriptional regulator (AraC-like) protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004318090.1 KEGG: phe:Phep_1323 hypothetical protein YP_004318091.1 KEGG: hmg:100209245 similar to predicted protein YP_004318092.1 PFAM: peptidase M19, renal dipeptidase; KEGG: cpi:Cpin_6999 peptidase M19 renal dipeptidase YP_004318093.1 PFAM: alanine racemase, N-terminal; KEGG: sli:Slin_1233 alanine racemase domain protein YP_004318094.1 PFAM: endoribonuclease L-PSP; KEGG: fjo:Fjoh_0668 endoribonuclease L-PSP YP_004318095.1 PFAM: xylose isomerase, TIM barrel domain; KEGG: cpi:Cpin_4110 xylose isomerase domain protein TIM barrel YP_004318096.1 KEGG: phe:Phep_1148 periplasmic binding protein/LacI transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004318097.1 PFAM: Lipase, GDSL; KEGG: htu:Htur_4445 lipolytic protein G-D-S-L family YP_004318098.1 PFAM: pectinesterase, catalytic; KEGG: phe:Phep_1157 pectinesterase YP_004318099.1 KEGG: zpr:ZPR_1022 six-hairpin glycosidase YP_004318100.1 KEGG: phe:Phep_1159 pectate lyase; TIGRFAM: Pectic acid lyase; PFAM: Pectic acid lyase YP_004318101.1 KEGG: phe:Phep_1150 glycoside hydrolase 43; PFAM: glycoside hydrolase, family 43 YP_004318102.1 PFAM: pectinesterase, catalytic; KEGG: phe:Phep_1149 pectinesterase YP_004318103.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: cpi:Cpin_5508 TonB-dependent receptor plug YP_004318104.1 PFAM: RagB/SusD; KEGG: sli:Slin_4783 RagB/SusD domain protein YP_004318105.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: fjo:Fjoh_4255 TonB-dependent receptor, plug YP_004318106.1 PFAM: RagB/SusD; KEGG: fjo:Fjoh_4254 RagB/SusD domain-containing protein YP_004318107.1 PFAM: glycoside hydrolase, family 28; KEGG: phe:Phep_1158 glycoside hydrolase 28 YP_004318108.1 PFAM: glycosyl hydrolase, family 88; KEGG: cpi:Cpin_5505 glycosyl hydrolase 88 YP_004318109.1 KEGG: cpi:Cpin_5504 altronate oxidoreductase; PFAM: mannitol dehydrogenase, C-terminal; mannitol dehydrogenase, N-terminal YP_004318110.1 PFAM: D-galactarate dehydratase/altronate hydrolase, C-terminal; KEGG: phe:Phep_4019 altronate dehydratase; SMART: SAF domain YP_004318111.1 HAMAP: uronate isomerase; KEGG: cpi:Cpin_5502 glucuronate isomerase; PFAM: uronate isomerase YP_004318112.1 PFAM: Major facilitator superfamily MFS-1; KEGG: phe:Phep_2272 major facilitator superfamily MFS_1 YP_004318113.1 PFAM: Major facilitator superfamily MFS-1; KEGG: fjo:Fjoh_1167 major facilitator transporter YP_004318114.1 PFAM: transposase, IS116/IS110/IS902; transposase, IS111A/IS1328/IS1533, N-terminal; KEGG: fjo:Fjoh_2997 transposase IS116/IS110/IS902 family protein YP_004318115.1 PFAM: alkaline phosphatase; KEGG: zpr:ZPR_3185 alkaline phosphatase; SMART: alkaline phosphatase YP_004318116.1 KEGG: fjo:Fjoh_1917 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004318117.1 KEGG: bfs:BF0974 hypothetical protein YP_004318118.1 PFAM: Lipase, GDSL; KEGG: phe:Phep_0578 lipolytic protein G-D-S-L family YP_004318119.1 KEGG: aba:acid345_2649 haloacid dehalogenase-like hydrolase YP_004318120.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: phe:Phep_0005 glycerophosphoryl diester phosphodiesterase YP_004318121.1 PFAM: RagB/SusD; KEGG: phe:Phep_2140 RagB/SusD domain protein YP_004318122.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: phe:Phep_2139 TonB-dependent receptor plug YP_004318123.1 PFAM: Collagen-binding surface protein Cna-like, B-type domain; TonB-dependent receptor, plug; KEGG: cpi:Cpin_3262 hypothetical protein YP_004318124.1 PFAM: Major intrinsic protein; KEGG: phe:Phep_4188 MIP family channel protein YP_004318125.1 PFAM: carbohydrate kinase, FGGY, N-terminal; carbohydrate kinase, FGGY, C-terminal; TIGRFAM: glycerol kinase; HAMAP: glycerol kinase; KEGG: cpi:Cpin_0727 glycerol kinase YP_004318126.1 KEGG: phe:Phep_0569 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase YP_004318127.1 KEGG: phe:Phep_0568 regulatory protein DeoR; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004318128.1 PFAM: glutaredoxin; KEGG: lba:Lebu_1107 hypothetical protein YP_004318129.1 KEGG: str:Sterm_2766 NrdI protein; TIGRFAM: ribonucleotide reductase class Ib, NrdI; PFAM: ribonucleotide reductase class Ib, NrdI YP_004318130.1 KEGG: str:Sterm_2765 ribonucleoside-diphosphate reductase, subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit, C-terminal; ribonucleotide reductase N-terminal; ribonucleotide reductase large subunit, N-terminal YP_004318131.1 KEGG: str:Sterm_2764 ribonucleoside-diphosphate reductase; PFAM: ribonucleotide reductase YP_004318132.1 KEGG: phe:Phep_2623 cyclase/dehydrase YP_004318133.1 KEGG: phe:Phep_3670 protein of unknown function UPF0187 YP_004318134.1 KEGG: phe:Phep_3179 hypothetical protein YP_004318135.1 PFAM: GH3 auxin-responsive promoter; KEGG: phe:Phep_3178 GH3 auxin-responsive promoter YP_004318136.1 PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: phe:Phep_3177 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_004318137.1 KEGG: phe:Phep_3176 membrane-associated zinc metalloprotease; TIGRFAM: peptidase M50, membrane-associated zinc metallopeptidase; PFAM: peptidase M50; PDZ/DHR/GLGF YP_004318138.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: azo:azo3718 hypothetical protein YP_004318139.1 KEGG: cpi:Cpin_3337 CheB methylesterase; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase YP_004318140.1 KEGG: phe:Phep_3082 trigger factor; TIGRFAM: Trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial YP_004318141.1 HAMAP: peptidase S14, ClpP; KEGG: phe:Phep_3081 endopeptidase Clp; PFAM: peptidase S14, ClpP YP_004318142.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Clp protease ATP-binding subunit ClpX; KEGG: phe:Phep_3080 ATP-dependent Clp protease ATP-binding subunit ClpX; HAMAP: Clp protease ATP-binding subunit ClpX; PFAM: ATPase, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal YP_004318143.1 KEGG: phe:Phep_3079 AMP nucleosidase; TIGRFAM: AMP nucleosidase, PFAM: nucleoside phosphorylase domain YP_004318144.1 PFAM: pyridoxal phosphate-dependent enzyme subunit beta; cystathionine beta-synthase, core; KEGG: phe:Phep_1434 cysteine synthase; SMART: cystathionine beta-synthase, core YP_004318145.1 PFAM: Enolpyruvate transferase domain; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: phe:Phep_1435 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_004318146.1 KEGG: phe:Phep_1436 hypothetical protein YP_004318147.1 PFAM: DNA helicase, UvrD/REP type; KEGG: phe:Phep_1437 UvrD/REP helicase YP_004318148.1 PFAM: protein of unknown function DUF1080; KEGG: fbc:FB2170_06090 hypothetical protein YP_004318149.1 PFAM: NUDIX hydrolase domain; KEGG: phe:Phep_2567 NUDIX hydrolase YP_004318150.1 KEGG: cts:Ctha_0506 helix-hairpin-helix DNA-binding class 1 YP_004318151.1 KEGG: phe:Phep_2537 hypothetical protein YP_004318152.1 KEGG: phe:Phep_2538 ComEC/Rec2-related protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein YP_004318153.1 TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: phe:Phep_1902 ATP-dependent DNA helicase, RecQ family; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004318154.1 KEGG: sli:Slin_4780 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2 YP_004318155.1 PFAM: FecR protein; KEGG: dfe:Dfer_2206 anti-FecI sigma factor, FecR YP_004318156.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: sli:Slin_2991 TonB-dependent receptor plug YP_004318157.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_1459 RagB/SusD domain protein YP_004318158.1 PFAM: Major facilitator superfamily MFS-1; KEGG: phe:Phep_1904 major facilitator superfamily MFS_1 YP_004318159.1 PFAM: cysteine-rich domain; KEGG: phe:Phep_1905 protein of unknown function DUF224 cysteine-rich region domain protein YP_004318160.1 PFAM: xylose isomerase, TIM barrel domain; KEGG: dfe:Dfer_0469 xylose isomerase domain protein TIM barrel YP_004318161.1 KEGG: phe:Phep_2669 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004318162.1 PFAM: FecR protein; KEGG: rbi:RB2501_10752 anti-sigma factor YP_004318163.1 KEGG: phe:Phep_2530 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SMART: Secretin/TonB, short N-terminal YP_004318164.1 PFAM: RagB/SusD; KEGG: phe:Phep_2529 RagB/SusD domain protein YP_004318165.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: sli:Slin_2991 TonB-dependent receptor plug YP_004318166.1 PFAM: RagB/SusD; KEGG: sli:Slin_2992 RagB/SusD domain protein YP_004318167.1 PFAM: xylose isomerase, TIM barrel domain; KEGG: dfe:Dfer_2598 xylose isomerase domain protein TIM barrel YP_004318168.1 PFAM: oxidoreductase, N-terminal; KEGG: dfe:Dfer_2975 oxidoreductase domain protein YP_004318169.1 PFAM: protein of unknown function DUF1080; PBS lyase HEAT-like repeat; KEGG: phe:Phep_2672 protein of unknown function DUF1080 YP_004318170.1 TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; KEGG: cpi:Cpin_7045 RNA polymerase, sigma-24 subunit, ECF subfamily; SMART: transcription regulator LuxR, C-terminal YP_004318171.1 PFAM: FecR protein; KEGG: dfe:Dfer_1496 anti-FecI sigma factor, FecR YP_004318172.1 KEGG: dfe:Dfer_2451 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; SMART: Secretin/TonB, short N-terminal YP_004318173.1 KEGG: sli:Slin_3961 hypothetical protein YP_004318174.1 PFAM: Amidohydrolase 1; KEGG: sli:Slin_3969 amidohydrolase YP_004318175.1 PFAM: endoribonuclease L-PSP; KEGG: sli:Slin_3967 endoribonuclease L-PSP YP_004318176.1 KEGG: sli:Slin_6067 demethylmenaquinone methyltransferase-like protein YP_004318177.1 PFAM: sodium symporter; KEGG: dfe:Dfer_2456 bile acid:sodium symporter YP_004318178.1 KEGG: sli:Slin_3968 L-seryl-tRNA(ser) selenium transferase YP_004318179.1 TIGRFAM: threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; threonyl/alanyl tRNA synthetase, SAD; TGS; anticodon-binding; KEGG: phe:Phep_1906 threonyl-tRNA synthetase; SMART: threonyl/alanyl tRNA synthetase, SAD YP_004318180.1 TIGRFAM: translation initiation factor 3; HAMAP: translation initiation factor 3; KEGG: phe:Phep_1907 translation initiation factor IF-3; PFAM: translation initiation factor 3, N-terminal; translation initiation factor 3, C-terminal YP_004318181.1 TIGRFAM: ribosomal protein L35, non-mitochondrial; HAMAP: ribosomal protein L35, non-mitochondrial; KEGG: phe:Phep_1908 ribosomal protein L35; PFAM: ribosomal protein L35 YP_004318182.1 TIGRFAM: ribosomal protein L20; HAMAP: ribosomal protein L20; KEGG: phe:Phep_1909 ribosomal protein L20; PFAM: ribosomal protein L20 YP_004318183.1 KEGG: phe:Phep_1418 hydroxymethylglutaryl-CoA lyase; PFAM: pyruvate carboxyltransferase YP_004318184.1 PFAM: ferredoxin; KEGG: sli:Slin_3269 ferredoxin YP_004318185.1 HAMAP: ferredoxin--NADP reductase, type 2; KEGG: sli:Slin_3270 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004318186.1 KEGG: sli:Slin_6318 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004318187.1 KEGG: phe:Phep_1420 bifunctional preprotein translocase subunit SecD/SecF; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein, bacteria; SecF protein; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal YP_004318188.1 PFAM: dihydrofolate reductase domain; KEGG: phe:Phep_1421 dihydrofolate reductase YP_004318189.1 PFAM: Thymidylate synthase; TIGRFAM: Thymidylate synthase; HAMAP: Thymidylate synthase; KEGG: chu:CHU_1289 thymidylate synthase YP_004318190.1 KEGG: phe:Phep_3746 Ig family protein YP_004318191.1 KEGG: mco:MCJ_004030 LppS lipoprotein YP_004318192.1 KEGG: phe:Phep_1646 conserved repeat domain protein; TIGRFAM: Domain of unknown function DUF11; PFAM: Domain of unknown function DUF11 YP_004318193.1 PFAM: GHMP kinase; GHMP kinase, C-terminal; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: phe:Phep_1424 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_004318194.1 PFAM: xylose isomerase, TIM barrel domain; KEGG: thx:Thet_1837 xylose isomerase domain-containing protein YP_004318195.1 KEGG: tcr:506269.40 mucin-associated surface protein (MASP) YP_004318196.1 PFAM: cytochrome C biogenesis protein CcmB; KEGG: phe:Phep_3222 cytochrome C biogenesis protein CcmB YP_004318197.1 PFAM: cytochrome C assembly protein; KEGG: phe:Phep_3221 cytochrome C assembly protein YP_004318198.1 KEGG: phe:Phep_3220 hypothetical protein YP_004318199.1 PFAM: glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; KEGG: phe:Phep_3219 Glu/Leu/Phe/Val dehydrogenase dimerisation region; SMART: glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal YP_004318200.1 SMART: peptidase S16, lon N-terminal; ATPase, AAA+ type, core; TIGRFAM: peptidase S16, ATP-dependent protease La; KEGG: phe:Phep_1193 ATP-dependent protease La; PFAM: peptidase S16, Lon C-terminal; peptidase S16, lon N-terminal; ATPase, AAA-type, core YP_004318201.1 KEGG: phe:Phep_1194 tetratricopeptide domain protein YP_004318202.1 KEGG: phe:Phep_1195 hypothetical protein YP_004318203.1 PFAM: BPG-independent PGAM, N-terminal; metalloenzyme; TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; HAMAP: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: phe:Phep_1196 phosphoglyceromutase YP_004318204.1 KEGG: phe:Phep_1197 hypothetical protein YP_004318205.1 TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; KEGG: phe:Phep_1198 nicotinate-nucleotide pyrophosphorylase; PFAM: quinolinate phosphoribosyl transferase, C-terminal domain; quinolinate phosphoribosyl transferase, N-terminal YP_004318206.1 TIGRFAM: glycerol-3-phosphate acyltransferase, bacteria; HAMAP: glycerol-3-phosphate acyltransferase, bacteria; KEGG: phe:Phep_1199 protein of unknown function DUF205; PFAM: glycerol-3-phosphate acyltransferase, bacteria YP_004318207.1 PFAM: peptidase M48; KEGG: cpi:Cpin_6512 peptidase M48 Ste24p YP_004318208.1 KEGG: phe:Phep_1201 chorismate binding; PFAM: chorismate binding, C-terminal YP_004318209.1 KEGG: phe:Phep_1202 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; HAMAP: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase YP_004318210.1 PFAM: ferric-uptake regulator; KEGG: phe:Phep_1203 ferric-uptake regulator YP_004318211.1 SMART: RelA/SpoT; metal-dependent phosphohydrolase, HD domain; TIGRFAM: RelA/SpoT protein; KEGG: phe:Phep_1204 RelA/SpoT family protein; PFAM: RelA/SpoT; metal-dependent phosphohydrolase, HD subdomain; TGS; Amino acid-binding ACT YP_004318212.1 KEGG: phe:Phep_1206 hypothetical protein YP_004318213.1 PFAM: glutathione peroxidase; KEGG: phe:Phep_1207 glutathione peroxidase YP_004318214.1 PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: phe:Phep_1208 LmbE family protein YP_004318215.1 KEGG: lby:Lbys_1240 acyl-CoA dehydrogenase domaiN-containing protein; PFAM: acyl-CoA oxidase/dehydrogenase, type 1; acyl-CoA dehydrogenase, N-terminal; acyl-CoA oxidase/dehydrogenase, central domain YP_004318216.1 PFAM: acyl-CoA reductase; KEGG: phe:Phep_3204 acyl-CoA reductase YP_004318217.1 PFAM: 4Fe-4S binding domain; KEGG: phe:Phep_3203 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_004318218.1 PFAM: UspA; KEGG: phe:Phep_3202 UspA domain protein YP_004318219.1 PFAM: NLP/P60; KEGG: phe:Phep_3201 NLP/P60 protein YP_004318220.1 PFAM: Orn/DAP/Arg decarboxylase 2, C-terminal; Orn/DAP/Arg decarboxylase 2, N-terminal; KEGG: phe:Phep_2320 Orn/DAP/Arg decarboxylase 2 YP_004318221.1 KEGG: dfe:Dfer_5776 hypothetical protein YP_004318222.1 KEGG: sli:Slin_0192 arginine deiminase; PFAM: Amidinotransferase YP_004318223.1 KEGG: phe:Phep_2318 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase, class Ic; HAMAP: arginyl-tRNA synthetase, class Ic YP_004318224.1 KEGG: gfo:GFO_3553 monovalent cation/H+ antiporter subunit A; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal YP_004318225.1 PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: hha:Hhal_2034 monovalent cation/H+ antiporter subunit B YP_004318226.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L/K; KEGG: gsu:GSU2342 monovalent cation/H+ antiporter subunit C YP_004318227.1 KEGG: rca:Rcas_1771 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone/plastoquinone oxidoreductase YP_004318228.1 PFAM: cation antiporter; KEGG: lby:Lbys_2978 multisubunit sodium/proton antiporter, mrpe subunit YP_004318229.1 PFAM: Multiple resistance and pH regulation protein F; KEGG: cli:Clim_0982 multiple resistance and pH regulation protein F YP_004318230.1 KEGG: cli:Clim_0983 monovalent cation/proton antiporter, MnhG/PhaG subunit; TIGRFAM: Na+/H+ antiporter subunit; PFAM: Na+/H+ antiporter subunit YP_004318231.1 KEGG: phe:Phep_3002 beta-lactamase; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004318232.1 PFAM: phosphoenolpyruvate carboxykinase, ATP-utilising; TIGRFAM: phosphoenolpyruvate carboxykinase, ATP-utilising; HAMAP: phosphoenolpyruvate carboxykinase, ATP-utilising; KEGG: phe:Phep_4091 phosphoenolpyruvate carboxykinase YP_004318233.1 KEGG: lby:Lbys_1905 peptidase S9 prolyl oligopeptidase active site domain protein YP_004318234.1 KEGG: phe:Phep_1561 iron-sulfur cluster assembly accessory protein; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis YP_004318235.1 KEGG: cpi:Cpin_0229 cysteine desulfurase; PFAM: Aminotransferase, class V/cysteine desulfurase YP_004318237.1 KEGG: amu:Amuc_1437 hypothetical protein YP_004318238.1 PFAM: chloride channel, voltage gated; cystathionine beta-synthase, core; KEGG: phe:Phep_2520 chloride channel core YP_004318239.1 KEGG: phe:Phep_1377 hypothetical protein YP_004318240.1 KEGG: bvu:BVU_3334 transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004318241.1 KEGG: dfe:Dfer_4161 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004318242.1 KEGG: dfe:Dfer_2557 glycine C-acetyltransferase; PFAM: Aminotransferase, class I/classII YP_004318243.1 KEGG: dfe:Dfer_2556 hypothetical protein YP_004318244.1 KEGG: dfe:Dfer_2554 hypothetical protein YP_004318245.1 PFAM: Fatty acid hydroxylase; KEGG: dfe:Dfer_2546 fatty acid hydroxylase YP_004318246.1 KEGG: phe:Phep_3094 hypothetical protein YP_004318247.1 PFAM: GtrA-like protein; KEGG: phe:Phep_3095 GtrA family protein YP_004318248.1 KEGG: dfe:Dfer_2547 hypothetical protein YP_004318249.1 KEGG: phe:Phep_4200 hypothetical protein YP_004318250.1 PFAM: FAD dependent oxidoreductase; KEGG: cpi:Cpin_5079 glucose-methanol-choline oxidoreductase YP_004318251.1 KEGG: cpi:Cpin_5080 twin-arginine translocation pathway signal YP_004318252.1 KEGG: ddi:DDB_G0271136 GAF domain-containing protein YP_004318253.1 KEGG: cpi:Cpin_5493 hypothetical protein YP_004318254.1 KEGG: phe:Phep_2043 histone deacetylase; PFAM: histone deacetylase superfamily YP_004318255.1 PFAM: esterase; KEGG: dfe:Dfer_5713 esterase YP_004318256.1 KEGG: phe:Phep_4228 hypothetical protein YP_004318257.1 KEGG: coc:Coch_1750 conserved hypothetical protein, membrane YP_004318258.1 TIGRFAM: ribosomal protein L31; HAMAP: ribosomal protein L31; KEGG: phe:Phep_1566 ribosomal protein L31; PFAM: ribosomal protein L31 YP_004318259.1 KEGG: phe:Phep_1567 hypothetical protein YP_004318260.1 TIGRFAM: triosephosphate isomerase; KEGG: phe:Phep_1568 triosephosphate isomerase; PFAM: triosephosphate isomerase YP_004318261.1 KEGG: phe:Phep_1569 ribosomal protein L11 methyltransferase; HAMAP: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase, PrmA YP_004318262.1 KEGG: fjo:Fjoh_0414 cytoplasmic peptidoglycan synthetase domain-containing protein; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal YP_004318263.1 KEGG: phe:Phep_1571 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004318264.1 KEGG: phe:Phep_1572 hypothetical protein YP_004318265.1 KEGG: phe:Phep_1573 hypothetical protein YP_004318266.1 KEGG: cpi:Cpin_7248 chromosome segregation and condensation protein, ScpB; TIGRFAM: chromosome segregation/condensation protein ScpB, prokaryote; PFAM: chromosome segregation/condensation protein ScpB, prokaryote YP_004318267.1 TIGRFAM: FO synthase, subunit 2; PFAM: radical SAM; KEGG: phe:Phep_1588 radical SAM protein; SMART: Elongator protein 3/MiaB/NifB YP_004318268.1 TIGRFAM: MiaB-like tRNA modifying enzyme; methylthiotransferase; PFAM: methylthiotransferase, N-terminal; radical SAM; KEGG: phe:Phep_2937 MiaB-like tRNA modifying enzyme; SMART: Elongator protein 3/MiaB/NifB YP_004318269.1 PFAM: NLP/P60; KEGG: phe:Phep_1884 NLP/P60 protein YP_004318270.1 KEGG: phe:Phep_1888 exonuclease RNase T and DNA polymerase III; PFAM: exonuclease, RNase T/DNA polymerase III; SMART: exonuclease YP_004318271.1 KEGG: phe:Phep_2060 replicative DNA helicase; TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal YP_004318272.1 TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; KEGG: phe:Phep_2061 RNA methyltransferase, TrmH family, group 3; SMART: RNA 2-O ribose methyltransferase, substrate binding YP_004318273.1 KEGG: fps:FP1711 major facilitator superfamily H(+)/nucleoside permease; manually curated; TIGRFAM: nucleoside:H+ symporter YP_004318274.1 PFAM: Domain of unknown function DUF151; UvrB/UvrC protein; KEGG: phe:Phep_2055 protein of unknown function DUF151 YP_004318275.1 KEGG: phe:Phep_2056 electron transfer flavoprotein alpha/beta-subunit; PFAM: electron transfer flavoprotein, subunit alpha, C-terminal; electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: electron transfer flavoprotein, alpha/beta-subunit, N-terminal YP_004318276.1 KEGG: phe:Phep_2057 electron transfer flavoprotein alpha/beta-subunit; PFAM: electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: electron transfer flavoprotein, alpha/beta-subunit, N-terminal YP_004318277.1 KEGG: phe:Phep_2058 hypothetical protein YP_004318278.1 SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; TIGRFAM: DNA mismatch repair protein MutS, type 1; KEGG: phe:Phep_1883 DNA mismatch repair protein MutS; HAMAP: DNA mismatch repair protein MutS, type 1; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, clamp YP_004318279.1 PFAM: methyltransferase type 11; KEGG: phe:Phep_0102 methyltransferase type 11 YP_004318280.1 TIGRFAM: Nicotinate phosphoribosyltransferase; KEGG: phe:Phep_2095 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like YP_004318281.1 PFAM: Lipase, GDSL; KEGG: cpi:Cpin_3980 lipolytic protein G-D-S-L family YP_004318282.1 PFAM: Domain of unknown function DUF140; KEGG: sli:Slin_1812 protein of unknown function DUF140 YP_004318283.1 PFAM: ABC transporter-like; KEGG: phe:Phep_0796 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004318284.1 PFAM: Mammalian cell entry-related; KEGG: sli:Slin_1810 mammalian cell entry related domain protein YP_004318285.1 KEGG: phe:Phep_1844 ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN-related YP_004318286.1 KEGG: chu:CHU_1073 thioesterase; TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase YP_004318287.1 KEGG: phe:Phep_1845 aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family UPF0755; PFAM: Uncharacterised protein family UPF0755 YP_004318288.1 KEGG: phe:Phep_1846 PASTA domain containing protein; PFAM: PASTA; SMART: PASTA YP_004318289.1 PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; TIGRFAM: D-alanine--D-alanine ligase; HAMAP: D-alanine--D-alanine ligase; KEGG: phe:Phep_1847 D-alanyl-alanine synthetase A YP_004318290.1 PFAM: acyl-ACP thioesterase; KEGG: phe:Phep_1852 thioesterase YP_004318291.1 KEGG: phe:Phep_1853 ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial-type; PFAM: ribosomal protein S15 YP_004318293.1 KEGG: ddf:DEFDS_1226 biotin carboxyl carrier protein YP_004318294.1 PFAM: Lipase, GDSL; KEGG: dfe:Dfer_0110 lipolytic protein G-D-S-L family YP_004318295.1 PFAM: Helix-turn-helix, HxlR type; KEGG: cpi:Cpin_2645 HxlR family transcriptional regulator YP_004318296.1 PFAM: Major facilitator superfamily MFS-1; KEGG: cpi:Cpin_2644 major facilitator superfamily MFS_1 YP_004318297.1 KEGG: cpi:Cpin_5356 hypothetical protein YP_004318298.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: xca:xccb100_0352 hypothetical protein YP_004318299.1 KEGG: fjo:Fjoh_4024 hypothetical protein YP_004318300.1 KEGG: sli:Slin_0637 hypothetical protein YP_004318301.1 KEGG: phe:Phep_1854 polyribonucleotide nucleotidyltransferase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; ribosomal protein S1, RNA-binding domain; TIGRFAM: polyribonucleotide nucleotidyltransferase; HAMAP: polyribonucleotide nucleotidyltransferase; SMART: RNA-binding domain, S1; K Homology YP_004318302.1 TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: chu:CHU_1605 ribulose-phosphate 3-epimerase (D-ribulose-5-phosphate 3-epimerase); PFAM: ribulose-phosphate 3-epimerase YP_004318303.1 PFAM: Aminotransferase, class V/cysteine desulfurase; TIGRFAM: phosphoserine aminotransferase, subgroup; HAMAP: phosphoserine aminotransferase; KEGG: phe:Phep_1857 phosphoserine aminotransferase YP_004318304.1 KEGG: phe:Phep_1858 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004318305.1 KEGG: phe:Phep_1628 polyprenyl synthetase; PFAM: polyprenyl synthetase YP_004318306.1 SMART: ribonuclease II/R; Cold shock protein; RNA-binding domain, S1; TIGRFAM: ribonuclease R, bacterial; ribonuclease II/ribonuclease R, bacteria; KEGG: phe:Phep_1629 ribonuclease R; PFAM: ribonuclease II/R; ribonuclease B, N-terminal OB domain; ribosomal protein S1, RNA-binding domain YP_004318307.1 PFAM: ferric-uptake regulator; KEGG: lby:Lbys_2936 ferric uptake regulator, fur family YP_004318308.1 TIGRFAM: prolipoprotein diacylglyceryl transferase; HAMAP: prolipoprotein diacylglyceryl transferase; KEGG: zpr:ZPR_1664 prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase YP_004318309.1 KEGG: phe:Phep_3030 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG YP_004318310.1 TIGRFAM: RecR protein; HAMAP: RecR protein; KEGG: phe:Phep_3028 recombination protein RecR; SMART: Toprim domain YP_004318311.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: phe:Phep_3027 short-chain dehydrogenase/reductase SDR; SMART: polyketide synthase/Fatty acid synthase, KR YP_004318313.1 PFAM: glycosyl transferase, family 3; glycosyl transferase, family 3, N-terminal; TIGRFAM: anthranilate phosphoribosyl transferase; HAMAP: anthranilate phosphoribosyl transferase; KEGG: phe:Phep_3026 anthranilate phosphoribosyltransferase YP_004318314.1 KEGG: phe:Phep_3025 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) YP_004318315.1 PFAM: pyridoxal phosphate-dependent enzyme, beta subunit; TIGRFAM: tryptophan synthase, beta chain; HAMAP: tryptophan synthase beta chain/beta chain-like; KEGG: phe:Phep_3024 tryptophan synthase subunit beta YP_004318316.1 PFAM: tryptophan synthase, alpha chain; TIGRFAM: tryptophan synthase, alpha chain; HAMAP: tryptophan synthase, alpha chain; KEGG: phe:Phep_3023 tryptophan synthase, subunit alpha YP_004318317.1 PFAM: Major facilitator superfamily MFS-1; KEGG: phe:Phep_1458 major facilitator superfamily MFS_1 YP_004318318.1 KEGG: phe:Phep_1438 peptidase M20; PFAM: peptidase M20; peptidase M20, dimerisation YP_004318319.1 TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; threonyl/alanyl tRNA synthetase, SAD; phosphoesterase, DHHA1; KEGG: phe:Phep_2535 alanyl-tRNA synthetase; SMART: threonyl/alanyl tRNA synthetase, SAD YP_004318320.1 PFAM: Alkyl hydroperoxide reductase subunit C/ thiol specific antioxidant; KEGG: phe:Phep_2523 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004318321.1 KEGG: phe:Phep_2522 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004318322.1 KEGG: phe:Phep_2551 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004318323.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: phe:Phep_2521 pseudouridine synthase YP_004318324.1 KEGG: phe:Phep_1894 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004318325.1 KEGG: phe:Phep_1912 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004318326.1 KEGG: phe:Phep_1913 hypothetical protein YP_004318327.1 PFAM: WD40-like beta Propeller; KEGG: phe:Phep_1914 WD40 domain protein beta propeller YP_004318328.1 KEGG: phe:Phep_1915 glycosyl transferase 51; PFAM: glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase YP_004318329.1 KEGG: phe:Phep_1395 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004318330.1 KEGG: dfe:Dfer_4966 ABC transporter permease YP_004318331.1 PFAM: ABC transporter-like; KEGG: coc:Coch_2040 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004318332.1 KEGG: phe:Phep_1453 hypothetical protein YP_004318333.1 SMART: heat shock protein DnaJ, N-terminal; TIGRFAM: chaperone DnaJ; KEGG: phe:Phep_3209 chaperone protein DnaJ; HAMAP: chaperone DnaJ; PFAM: chaperone DnaJ, C-terminal; heat shock protein DnaJ, N-terminal; heat shock protein DnaJ, cysteine-rich domain YP_004318334.1 KEGG: phe:Phep_3208 GrpE protein; HAMAP: GrpE nucleotide exchange factor; PFAM: GrpE nucleotide exchange factor YP_004318335.1 PFAM: ABC transporter-like; KEGG: phe:Phep_3207 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004318336.1 KEGG: phe:Phep_3206 hypothetical protein YP_004318337.1 PFAM: protein of unknown function DUF1905; KEGG: sli:Slin_2380 hypothetical protein YP_004318338.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aas:Aasi_1686 hypothetical protein YP_004318339.1 SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: cpi:Cpin_6750 AraC family transcriptional regulator YP_004318340.1 PFAM: DinB; KEGG: rbi:RB2501_05735 hypothetical protein YP_004318341.1 PFAM: Uncharacterised protein family YphA; KEGG: aba:acid345_1790 DoxX YP_004318342.1 KEGG: phe:Phep_1320 GTP-binding protein YchF; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Domain of unknown function DUF933; GTP-binding protein, HSR1-related YP_004318343.1 KEGG: zpr:ZPR_4698 ROK family transcriptional repressor protein; PFAM: ROK YP_004318344.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: sli:Slin_3040 TonB-dependent receptor plug YP_004318345.1 KEGG: lby:Lbys_2804 hypothetical protein YP_004318346.1 KEGG: cpi:Cpin_0323 glycoside hydrolase 3 domain protein; PFAM: glycoside hydrolase, family 3, C-terminal; glycoside hydrolase, family 3, N-terminal YP_004318347.1 KEGG: phe:Phep_1176 RNA binding S1 domain protein; PFAM: ribosomal protein S1, RNA-binding domain; SMART: RNA-binding domain, S1 YP_004318348.1 TIGRFAM: cytidylate kinase; HAMAP: cytidylate kinase; KEGG: phe:Phep_1190 cytidylate kinase; PFAM: cytidylate kinase domain YP_004318349.1 PFAM: peptide chain release factor class I/class II; KEGG: phe:Phep_1191 class I peptide chain release factor YP_004318350.1 KEGG: phe:Phep_3218 hypothetical protein YP_004318351.1 PFAM: cytochrome C assembly protein; KEGG: phe:Phep_3217 cytochrome C assembly protein YP_004318352.1 PFAM: Domain of unknown function DUF2520; NADP oxidoreductase, coenzyme F420-dependent; KEGG: phe:Phep_3216 oxidoreductase domain protein YP_004318353.1 KEGG: phe:Phep_3213 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; PFAM: HAD superfamily hydrolase-like, type 3 YP_004318354.1 TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: bvu:BVU_2498 Maf-like protein; PFAM: Maf-like protein YP_004318355.1 KEGG: phe:Phep_2971 metallophosphoesterase; TIGRFAM: phosphodiesterase MJ0936; PFAM: metallo-dependent phosphatase YP_004318356.1 HAMAP: fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase; KEGG: phe:Phep_2970 inositol phosphatase/fructose-16-bisphosphatase; PFAM: fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase YP_004318357.1 KEGG: phe:Phep_2536 regulatory protein MerR; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004318358.1 PFAM: Cation/H+ exchanger; KEGG: fjo:Fjoh_4708 sodium/hydrogen exchanger YP_004318359.1 TIGRFAM: isocitrate dehydrogenase NADP-dependent, prokaryotic; KEGG: cpi:Cpin_6591 isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase YP_004318360.1 KEGG: phe:Phep_3751 sigma-54 factor interaction domain-containing protein; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core YP_004318361.1 KEGG: phe:Phep_3752 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain YP_004318362.1 TIGRFAM: chaperonin ClpB; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: phe:Phep_1456 ATP-dependent chaperone ClpB; SMART: ATPase, AAA+ type, core YP_004318363.1 KEGG: phe:Phep_1462 hypothetical protein YP_004318364.1 TIGRFAM: Orotate phosphoribosyl transferase, clade 1; KEGG: phe:Phep_1463 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_004318365.1 PFAM: NUDIX hydrolase domain; KEGG: phe:Phep_1465 NUDIX hydrolase YP_004318366.1 PFAM: Cytidylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; HAMAP: Coenzyme A biosynthesis protein; KEGG: phe:Phep_1466 pantetheine-phosphate adenylyltransferase YP_004318367.1 PFAM: RNA methyltransferase, RsmD; KEGG: phe:Phep_1467 hypothetical protein YP_004318368.1 KEGG: phe:Phep_1468 hypothetical protein YP_004318369.1 KEGG: phe:Phep_1469 exonuclease V subunit alpha YP_004318370.1 PFAM: Asp/Glu/hydantoin racemase; TIGRFAM: glutamate racemase; HAMAP: glutamate racemase; KEGG: sli:Slin_2377 glutamate racemase YP_004318371.1 KEGG: phe:Phep_3020 glutamate synthase (NADPH); PFAM: glutamate synthase, central-C YP_004318372.1 TIGRFAM: Dehydroquinase, class II; KEGG: phe:Phep_2174 3-dehydroquinate dehydratase, type II; PFAM: Dehydroquinase, class II YP_004318373.1 KEGG: phe:Phep_0201 membrane or secreted protein YP_004318374.1 PFAM: glycosyl transferase, family 2; KEGG: phe:Phep_2173 glycosyl transferase 2 YP_004318375.1 PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: cpi:Cpin_2595 lipid A biosynthesis acyltransferase YP_004318376.1 PFAM: WbqC-like protein family; KEGG: phe:Phep_2171 WbqC-like family protein YP_004318377.1 KEGG: sli:Slin_2703 protein of unknown function DUF893 YccS/YhfK YP_004318378.1 KEGG: phe:Phep_4263 phosphoenolpyruvate carboxylase; PFAM: phosphoenolpyruvate carboxylase YP_004318379.1 KEGG: ppw:PputW619_2670 lipoprotein YP_004318380.1 PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; KEGG: phe:Phep_0179 oxidoreductase domain protein YP_004318381.1 KEGG: ehi:EHI_110740 hypothetical protein YP_004318382.1 TIGRFAM: polyphosphate kinase; KEGG: phe:Phep_1636 polyphosphate kinase; PFAM: polyphosphate kinase YP_004318383.1 PFAM: Ppx/GppA phosphatase; KEGG: phe:Phep_1637 Ppx/GppA phosphatase YP_004318384.1 TIGRFAM: aspartate kinase domain; KEGG: phe:Phep_2333 aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_004318385.1 TIGRFAM: diaminopimelate decarboxylase; KEGG: phe:Phep_2332 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal YP_004318386.1 KEGG: phe:Phep_2190 hypothetical protein YP_004318387.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase I, bacterial-type; KEGG: phe:Phep_2189 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain YP_004318388.1 TIGRFAM: tRNA-specific 2-thiouridylase; HAMAP: tRNA-specific 2-thiouridylase; KEGG: phe:Phep_2184 tRNA-specific 2-thiouridylase MnmA; PFAM: tRNA-specific 2-thiouridylase YP_004318389.1 KEGG: saq:Sare_0635 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004318390.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, core; KEGG: phe:Phep_1897 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: phosphoribosylaminoimidazole carboxylase, core YP_004318391.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: phe:Phep_1898 phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YP_004318392.1 PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; TIGRFAM: NADH-ubiquinone oxidoreductase, 20 Kd subunit; HAMAP: NADH-ubiquinone oxidoreductase, 20 Kd subunit; KEGG: dfe:Dfer_2472 NADH-quinone oxidoreductase, B subunit YP_004318393.1 HAMAP: NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid; KEGG: dfe:Dfer_2467 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 YP_004318394.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cpi:Cpin_6573 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004318395.1 TIGRFAM: transaldolase 3A/3B; HAMAP: transaldolase 3B, KEGG: cat:CA2559_10763 transaldolase; PFAM: transaldolase YP_004318396.1 KEGG: cpi:Cpin_0730 glutamate synthase (ferredoxin); PFAM: glutamate synthase, central-C; glutamine amidotransferase, class-II; glutamate synthase, central-N; glutamate synthase, subunit alpha, C-terminal YP_004318397.1 TIGRFAM: glutamate synthase, NADH/NADPH, small subunit 1; KEGG: cpi:Cpin_0731 glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004318398.1 PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: phe:Phep_2133 tRNA/rRNA methyltransferase (SpoU) YP_004318399.1 KEGG: phe:Phep_1267 hypothetical protein YP_004318400.1 KEGG: phe:Phep_1268 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SMART: RNA 2-O ribose methyltransferase, substrate binding YP_004318401.1 KEGG: phe:Phep_1269 surface antigen (D15); manually curated; PFAM: Bacterial surface antigen (D15) YP_004318402.1 KEGG: phe:Phep_1270 hypothetical protein YP_004318403.1 KEGG: phe:Phep_3092 nitrite and sulphite reductase 4Fe-4S region; PFAM: nitrite/sulphite reductase 4Fe-4S domain; nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; HEPN YP_004318404.1 TIGRFAM: uroporphyrin-III C-methyltransferase, C-terminal; KEGG: phe:Phep_3091 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase YP_004318405.1 KEGG: phe:Phep_3090 siroheme synthase; TIGRFAM: Sirohaem synthase, N-terminal; PFAM: protein of unknown function DUF81 YP_004318406.1 KEGG: phe:Phep_3089 phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulfate reductase YP_004318407.1 TIGRFAM: Sulphate adenylyltransferase, small subunit; KEGG: phe:Phep_3088 sulfate adenylyltransferase subunit 2; PFAM: phosphoadenosine phosphosulfate reductase YP_004318408.1 TIGRFAM: Sulphate adenylyltransferase, large subunit; Small GTP-binding protein; KEGG: phe:Phep_3087 sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2 YP_004318409.1 KEGG: cpi:Cpin_0864 hypothetical protein YP_004318410.1 HAMAP: DNA polymerase IV; KEGG: dfe:Dfer_0318 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like YP_004318411.1 KEGG: phe:Phep_4244 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004318412.1 PFAM: Streptomycin adenylyltransferase; KEGG: dfe:Dfer_2258 adenylyltransferase YP_004318413.1 KEGG: phe:Phep_4244 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004318414.1 KEGG: cpi:Cpin_7155 thioredoxin; TIGRFAM: thioredoxin; PFAM: thioredoxin domain YP_004318415.1 KEGG: kol:Kole_1982 hypothetical protein YP_004318416.1 KEGG: cpw:CPC735_005180 Bromodomain containing protein YP_004318418.1 KEGG: bth:BT_1190 ATP GTP-binding protein; HAMAP: ribosome biogenesis GTPase RsgA, PFAM: ribosome biogenesis GTPase RsgA YP_004318419.1 KEGG: lby:Lbys_2338 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004318420.1 KEGG: lby:Lbys_2336 hypothetical protein YP_004318421.1 KEGG: phe:Phep_3159 response regulator receiver; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain YP_004318422.1 KEGG: lby:Lbys_2335 hypothetical protein YP_004318423.1 KEGG: lby:Lbys_0289 hypothetical protein YP_004318424.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dfe:Dfer_1794 OmpA/MotB domain protein YP_004318426.1 KEGG: phe:Phep_3709 hypothetical protein YP_004318428.1 KEGG: lby:Lbys_2337 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; Tetratricopeptide TPR-1; SMART: ATPase-like, ATP-binding domain; Tetratricopeptide repeat YP_004318429.1 manually curated; KEGG: phe:Phep_1507 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII YP_004318430.1 PFAM: protein of unknown function DUF1573; KEGG: phe:Phep_1508 protein of unknown function DUF1573 YP_004318431.1 KEGG: phe:Phep_1509 transketolase; PFAM: transketolase, C-terminal; transketolase-like, pyrimidine-binding domain; dehydrogenase, E1 component; SMART: transketolase-like, pyrimidine-binding domain YP_004318432.1 TIGRFAM: chorismate synthase; KEGG: phe:Phep_1510 chorismate synthase; PFAM: chorismate synthase YP_004318433.1 HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase; KEGG: phe:Phep_1511 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: Enolpyruvate transferase domain YP_004318434.1 PFAM: chorismate mutase, type II; DAHP synthetase I/KDSA; KEGG: phe:Phep_1512 DAHP synthetase I/KdsA; SMART: chorismate mutase YP_004318435.1 KEGG: phe:Phep_1513 prephenate dehydratase; PFAM: prephenate dehydratase; Amino acid-binding ACT YP_004318436.1 KEGG: fbc:FB2170_01192 ammonium transporter family protein; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter YP_004318437.1 KEGG: phe:Phep_1007 hypothetical protein YP_004318438.1 PFAM: Reverse transcriptase; Group II intron, maturase-specific; KEGG: nth:Nther_2778 RNA-directed DNA polymerase (reverse transcriptase) YP_004318439.1 TIGRFAM: Na+/H+ antiporter NhaA; HAMAP: Na+/H+ antiporter NhaA; KEGG: dfe:Dfer_3089 Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA YP_004318441.1 KEGG: cpi:Cpin_3252 outer membrane protein YP_004318442.1 KEGG: cpi:Cpin_3241 hypothetical protein YP_004318443.1 PFAM: peptidase S54, rhomboid domain; KEGG: psl:Psta_0005 rhomboid family protein YP_004318444.1 KEGG: gym:GYMC10_2848 hypothetical protein YP_004318445.1 KEGG: cpi:Cpin_0769 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004318446.1 KEGG: dfe:Dfer_5586 hypothetical protein YP_004318447.1 KEGG: cpi:Cpin_2386 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp YP_004318448.1 KEGG: scl:sce0443 chloride channel; PFAM: chloride channel, voltage gated; cystathionine beta-synthase, core; SMART: cystathionine beta-synthase, core YP_004318449.1 PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; DNA glycosylase/AP lyase, catalytic domain; KEGG: cpi:Cpin_6494 DNA-formamidopyrimidine glycosylase; SMART: DNA glycosylase/AP lyase, catalytic domain YP_004318450.1 KEGG: sli:Slin_2805 CMP/dCMP deaminase zinc-binding protein; PFAM: CMP/dCMP deaminase, zinc-binding YP_004318451.1 PFAM: amylo-alpha-1,6-glucosidase; KEGG: cya:CYA_0269 glycogen debranching enzyme family protein YP_004318452.1 PFAM: glycosyl transferase, group 1; KEGG: nwa:Nwat_1578 glycosyl transferase group 1 YP_004318453.1 PFAM: heat shock protein Hsp20; KEGG: dfe:Dfer_0836 heat shock protein HSP20 YP_004318454.1 KEGG: dfe:Dfer_2112 hypothetical protein YP_004318455.1 PFAM: carbamoyl-phosphate synthetase, large subunit, oligomerisation; KEGG: cts:Ctha_2338 hypothetical protein YP_004318456.1 PFAM: beta-lactamase-like; KEGG: dfe:Dfer_1371 beta-lactamase; SMART: beta-lactamase-like YP_004318457.1 KEGG: cpi:Cpin_3382 hypothetical protein YP_004318458.1 KEGG: phe:Phep_2399 cytosolic protein YP_004318459.1 KEGG: xal:XALc_2193 heat shock protein 33 YP_004318460.1 PFAM: Dodecin flavoprotein; KEGG: gfo:GFO_1571 hypothetical protein YP_004318461.1 KEGG: zpr:ZPR_3532 choline/carnitine/betaine transport; TIGRFAM: BCCT transporter; PFAM: BCCT transporter YP_004318462.1 PFAM: UspA; KEGG: gfo:GFO_2553 universal stress protein family protein YP_004318463.1 PFAM: protein of unknown function DUF819; KEGG: shn:Shewana3_0774 hypothetical protein YP_004318464.1 KEGG: rba:RB11118 chloromuconate cycloisomerase YkfB1; PFAM: mandelate racemase/muconate lactonizing enzyme, C-terminal; mandelate racemase/muconate lactonizing enzyme, N-terminal; SMART: mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004318465.1 KEGG: phe:Phep_1008 hypothetical protein YP_004318466.1 KEGG: phe:Phep_0051 heat shock protein 90; PFAM: heat shock protein Hsp90, C-terminal; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain YP_004318467.1 PFAM: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; KEGG: phe:Phep_3005 glyceraldehyde-3-phosphate dehydrogenase; SMART: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain YP_004318468.1 KEGG: phe:Phep_3004 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3 YP_004318469.1 KEGG: zpr:ZPR_4697 hypothetical protein YP_004318470.1 PFAM: Sodium/solute symporter; KEGG: phe:Phep_3029 Na+/solute symporter YP_004318471.1 KEGG: phe:Phep_3780 N-acetylmuramic acid-6-phosphate etherase; TIGRFAM: N-acetylmuramic acid 6-phosphate etherase; HAMAP: N-acetylmuramic acid 6-phosphate etherase YP_004318472.1 KEGG: lby:Lbys_3421 metallophosphoesterase; PFAM: metallo-dependent phosphatase; pyrrolo-quinoline quinone repeat; SMART: pyrrolo-quinoline quinone beta-propeller repeat YP_004318473.1 PFAM: Uncharacterised conserved protein UCP016719; KEGG: pdi:BDI_3709 hypothetical protein YP_004318474.1 PFAM: RagB/SusD; KEGG: phe:Phep_4125 RagB/SusD domain protein YP_004318475.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: bfs:BF0381 hypothetical protein YP_004318476.1 KEGG: zpr:ZPR_4714 hypothetical protein YP_004318477.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: zpr:ZPR_4715 outer membrane protein Omp121 YP_004318478.1 KEGG: cpi:Cpin_6807 hypothetical protein YP_004318479.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: cpi:Cpin_6808 TonB-dependent receptor plug YP_004318480.1 KEGG: phe:Phep_0682 regulatory protein DeoR; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004318481.1 KEGG: phe:Phep_3008 hypothetical protein YP_004318482.1 PFAM: peptidase S41; KEGG: phe:Phep_3009 peptidase S41 YP_004318483.1 PFAM: transposase, IS116/IS110/IS902; KEGG: eba:ebA6749 transposase YP_004318484.1 PFAM: peptidase M28; KEGG: phe:Phep_3007 peptidase M28 YP_004318485.1 TIGRFAM: chromosome segregation protein SMC; PFAM: RecF/RecN/SMC; KEGG: chu:CHU_1592 chromosome segregation protein, Smc family protein; SMART: SMCs flexible hinge YP_004318486.1 KEGG: dan:Dana_GF21224 GF21224 gene product from transcript GF21224-RA YP_004318487.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: phe:Phep_2071 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004318488.1 KEGG: phe:Phep_2072 aminotransferase class I and II; PFAM: Aminotransferase, class I/classII YP_004318489.1 PFAM: ABC transporter substrate-binding protein; KEGG: cts:Ctha_2490 protein of unknown function DUF534 YP_004318490.1 PFAM: ABC transporter permease; KEGG: cts:Ctha_2116 inner-membrane translocator YP_004318491.1 PFAM: ABC transporter-like; KEGG: aai:AARI_12500 sugar ABC transporter ATP-binding subunit; SMART: ATPase, AAA+ type, core YP_004318492.1 PFAM: ABC transporter-like; KEGG: phe:Phep_3012 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004318493.1 KEGG: phe:Phep_3011 hypothetical protein YP_004318494.1 KEGG: phe:Phep_3010 hypothetical protein YP_004318495.1 KEGG: phe:Phep_2268 periplasmic binding protein/LacI transcriptional regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004318496.1 KEGG: phe:Phep_1612 methylcrotonoyl-CoA carboxylase; PFAM: carboxyl transferase YP_004318497.1 TIGRFAM: thioredoxin reductase; KEGG: phe:Phep_1613 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004318498.1 PFAM: Small multidrug resistance protein; KEGG: phe:Phep_4255 small multidrug resistance protein YP_004318499.1 KEGG: phe:Phep_4254 cyclic nucleotide-binding; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain YP_004318500.1 KEGG: phe:Phep_2066 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like beta Propeller; SMART: Tetratricopeptide repeat YP_004318501.1 PFAM: radical SAM; KEGG: phe:Phep_2067 radical SAM domain protein YP_004318502.1 KEGG: phe:Phep_3260 oxidoreductase domain protein; PFAM: oxidoreductase, N-terminal YP_004318503.1 PFAM: Aminoglycoside phosphotransferase; KEGG: bfs:BF0850 desulfatase YP_004318504.1 KEGG: bvu:BVU_2341 hypothetical protein YP_004318505.1 KEGG: phe:Phep_2969 ribonuclease H; PFAM: ribonuclease H domain YP_004318506.1 KEGG: bfs:BF3633 MarR family regulatory protein; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004318507.1 KEGG: phe:Phep_1620 hypothetical protein YP_004318508.1 KEGG: phe:Phep_1621 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004318509.1 PFAM: Sodium:dicarboxylate symporter; KEGG: phe:Phep_1622 sodium:dicarboxylate symporter YP_004318510.1 KEGG: phe:Phep_1623 hypothetical protein YP_004318511.1 PFAM: Ureohydrolase; TIGRFAM: formiminoglutamase; HAMAP: formiminoglutamase; KEGG: cpi:Cpin_2010 formiminoglutamase YP_004318512.1 TIGRFAM: Imidazolonepropionase; KEGG: fba:FIC_02214 imidazolonepropionase; PFAM: Amidohydrolase 1 YP_004318513.1 TIGRFAM: Urocanase; KEGG: cpi:Cpin_2007 urocanate hydratase; PFAM: Urocanase YP_004318514.1 TIGRFAM: histidine ammonia-lyase; KEGG: cpi:Cpin_2006 histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase YP_004318515.1 KEGG: cpi:Cpin_2005 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004318516.1 TIGRFAM: ribosomal protein L21; HAMAP: ribosomal protein L21; KEGG: phe:Phep_1624 ribosomal protein L21; PFAM: ribosomal protein L21 YP_004318517.1 TIGRFAM: ribosomal protein L27; HAMAP: ribosomal protein L27; KEGG: phe:Phep_1625 ribosomal protein L27; PFAM: ribosomal protein L27 YP_004318518.1 TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: fba:FIC_01692 asparagine synthetase B; PFAM: Asparagine synthase; glutamine amidotransferase, class-II YP_004318519.1 KEGG: phe:Phep_1560 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004318520.1 KEGG: zpr:ZPR_2050 hypothetical protein YP_004318521.1 PFAM: alpha/beta hydrolase fold-1; KEGG: cpi:Cpin_6287 protein of unknown function DUF829 YP_004318522.1 KEGG: dfe:Dfer_3314 transcriptional regulator, GntR family with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR YP_004318523.1 KEGG: phe:Phep_2565 hypothetical protein YP_004318524.1 KEGG: sli:Slin_5561 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/classII YP_004318525.1 TIGRFAM: Dethiobiotin synthase; HAMAP: Dethiobiotin synthase; KEGG: phe:Phep_1910 dethiobiotin synthase YP_004318526.1 SMART: Elongator protein 3/MiaB/NifB; Biotin/thiamin synthesis-associated protein; TIGRFAM: Biotin synthase; KEGG: dfe:Dfer_4292 biotin synthase; PFAM: Biotin/thiamin synthesis-associated protein; radical SAM YP_004318527.1 TIGRFAM: adenosylmethionine--8-amino-7-oxononanoate aminotransferase; KEGG: phe:Phep_2566 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III YP_004318528.1 KEGG: cpi:Cpin_4951 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004318529.1 KEGG: ptm:GSPATT00024859001 hypothetical protein YP_004318530.1 KEGG: dae:Dtox_1719 hypothetical protein YP_004318531.1 KEGG: pct:PC1_2557 choline transporter BetT YP_004318532.1 TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; HAMAP: Survival protein SurE-like phosphatase/nucleotidase; KEGG: cpi:Cpin_2160 stationary-phase survival protein SurE; PFAM: Survival protein SurE-like phosphatase/nucleotidase YP_004318533.1 KEGG: dfe:Dfer_0406 diacylglycerol kinase catalytic region; PFAM: diacylglycerol kinase, catalytic domain; SMART: diacylglycerol kinase, catalytic domain YP_004318534.1 KEGG: fjo:Fjoh_1837 hypothetical protein YP_004318535.1 KEGG: phe:Phep_1473 helix-turn-helix-domain containing protein AraC type; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004318536.1 PFAM: methicillin resistance protein; KEGG: phe:Phep_0801 methicillin resistance protein YP_004318537.1 KEGG: phe:Phep_2473 RNA binding S1 domain protein YP_004318538.1 PFAM: SMP-30/gluconolaconase/LRE-like region; KEGG: dfe:Dfer_2979 ATP/GTP-binding YP_004318539.1 TIGRFAM: Selenoprotein, Rdx type; KEGG: phe:Phep_2106 hypothetical protein YP_004318540.1 KEGG: fps:FP1904 muramidase; PFAM: mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme domain, subfamily 2 YP_004318541.1 KEGG: pph:Ppha_2480 hypothetical protein YP_004318542.1 PFAM: membrane bound O-acyl transferase, MBOAT; KEGG: pph:Ppha_2479 membrane bound O-acyl transferase MBOAT family protein YP_004318543.1 KEGG: fps:FP1905 hypothetical protein YP_004318544.1 KEGG: fjo:Fjoh_0490 TonB family protein YP_004318545.1 PFAM: protein of unknown function DUF1684; KEGG: dfe:Dfer_5770 protein of unknown function DUF1684 YP_004318546.1 PFAM: alpha/beta hydrolase fold-1; KEGG: cpi:Cpin_0843 alpha/beta hydrolase fold protein YP_004318547.1 KEGG: phe:Phep_3021 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal YP_004318548.1 PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: asparaginyl-tRNA synthetase, class IIb; HAMAP: asparaginyl-tRNA synthetase, class IIb; KEGG: phe:Phep_3019 asparaginyl-tRNA synthetase YP_004318549.1 PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; TIGRFAM: Succinyl-CoA synthetase, beta subunit; HAMAP: Succinyl-CoA synthetase subunit beta; KEGG: phe:Phep_3018 succinyl-CoA synthetase subunit beta YP_004318550.1 KEGG: bcy:Bcer98_2979 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: metal-dependent phosphohydrolase, HD domain YP_004318551.1 HAMAP: NAD(P)H-quinone oxidoreductase subunit D/H; KEGG: chu:CHU_0512 NADH dehydrogenase I, subunit D; PFAM: NADH-quinone oxidoreductase, subunit D YP_004318552.1 TIGRFAM: NADH dehydrogenase, subunit C; HAMAP: NADH dehydrogenase, subunit C; KEGG: dfe:Dfer_2473 NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit YP_004318553.1 PFAM: pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; pyridoxine 5'-phosphate oxidase dimerisation, C-terminal; TIGRFAM: pyridoxamine 5'-phosphate oxidase; HAMAP: pyridoxamine 5'-phosphate oxidase; KEGG: ote:Oter_0848 pyridoxamine 5'-phosphate oxidase YP_004318554.1 PFAM: protein of unknown function DUF179; KEGG: phe:Phep_1896 protein of unknown function DUF179 YP_004318555.1 KEGG: phe:Phep_2519 sigma-54 factor interaction domain-containing protein; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core YP_004318556.1 PFAM: cytochrome C, class I; KEGG: phe:Phep_2513 hypothetical protein YP_004318557.1 PFAM: Copper chaperone SCO1/SenC; KEGG: phe:Phep_2495 electron transporter SCO1/SenC YP_004318558.1 KEGG: phe:Phep_2496 hypothetical protein YP_004318559.1 PFAM: ATPase, AAA-4; KEGG: phe:Phep_2157 AAA-4 family protein YP_004318560.1 KEGG: phe:Phep_2158 translation elongation factor P (EF-P) YP_004318561.1 PFAM: Major facilitator superfamily MFS-1; KEGG: phe:Phep_2161 major facilitator superfamily MFS_1 YP_004318562.1 KEGG: fjo:Fjoh_4482 CzcA family heavy metal efflux protein; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein YP_004318563.1 PFAM: Domain of unknown function DUF190; KEGG: fjo:Fjoh_4483 hypothetical protein YP_004318564.1 TIGRFAM: Secretion protein HlyD; KEGG: fjo:Fjoh_4484 RND family efflux transporter MFP subunit YP_004318565.1 KEGG: bth:BT_0989 two-component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain YP_004318566.1 KEGG: bth:BT_0990 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004318567.1 KEGG: phe:Phep_2847 hypothetical protein YP_004318568.1 manually curated YP_004318569.1 KEGG: phe:Phep_2162 coproporphyrinogen III oxidase; PFAM: coproporphyrinogen III oxidase YP_004318570.1 SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; TIGRFAM: DNA gyrase subunit A; KEGG: phe:Phep_2163 DNA gyrase A subunit; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YP_004318571.1 PFAM: Tetratricopeptide TPR2; KEGG: pmx:PERMA_0503 tetratricopeptide repeat domain protein YP_004318572.1 PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; KEGG: phe:Phep_2164 tetratricopeptide domain protein YP_004318573.1 TIGRFAM: KpsF/GutQ; KEGG: phe:Phep_2063 KpsF/GutQ family protein; PFAM: Sugar isomerase (SIS); cystathionine beta-synthase, core YP_004318574.1 TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; KEGG: phe:Phep_2064 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain YP_004318575.1 TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; KEGG: phe:Phep_2065 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA YP_004318576.1 KEGG: cpi:Cpin_5583 transglutaminase; PFAM: transglutaminase-like; Bacterial transglutaminase-like, N-terminal; SMART: transglutaminase-like YP_004318577.1 PFAM: Domain of unknown function DUF403; KEGG: cpi:Cpin_5582 protein of unknown function DUF403 YP_004318578.1 PFAM: Domain of unknown function DUF404; Domain of unknown function DUF407; KEGG: cpi:Cpin_5581 protein of unknown function DUF404 YP_004318579.1 manually curated; KEGG: phe:Phep_2037 hypothetical protein YP_004318580.1 KEGG: phe:Phep_1923 hypothetical protein YP_004318581.1 KEGG: sli:Slin_1127 alpha-L-fucosidase; PFAM: glycoside hydrolase, family 29; SMART: glycoside hydrolase, family 29 YP_004318582.1 PFAM: glycoside hydrolase, family 29; KEGG: bfs:BF0810 alpha-L-fucosidase; SMART: glycoside hydrolase, family 29 YP_004318583.1 PFAM: Uncharacterised protein family UPF0118; KEGG: phe:Phep_1233 protein of unknown function UPF0118 YP_004318584.1 KEGG: oan:Oant_1146 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain YP_004318585.1 PFAM: protein of unknown function DUF178; KEGG: phe:Phep_1882 radical SAM domain-containing protein YP_004318586.1 KEGG: phe:Phep_1881 phosphoglycerate mutase; PFAM: histidine phosphatase superfamily, clade-1; SMART: histidine phosphatase superfamily, clade-1 YP_004318587.1 TIGRFAM: Menaquinone biosynthesis, SCO4494, predicted; FO synthase, subunit 2; PFAM: radical SAM; KEGG: phe:Phep_1880 radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_004318588.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: dfe:Dfer_1796 GCN5-related N-acetyltransferase YP_004318589.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: phe:Phep_1875 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004318590.1 TIGRFAM: homoserine acetyltransferase; KEGG: phe:Phep_1874 homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold-1 YP_004318591.1 KEGG: phe:Phep_1873 homoserine dehydrogenase; PFAM: homoserine dehydrogenase, catalytic; aspartate/homoserine dehydrogenase, NAD-binding YP_004318592.1 KEGG: phe:Phep_1899 HI0933 family protein; TIGRFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like YP_004318593.1 PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; KEGG: cbb:CLD_2620 oxidoreductase YP_004318594.1 KEGG: fjo:Fjoh_1874 hypothetical protein YP_004318595.1 KEGG: phe:Phep_1917 hypothetical protein YP_004318596.1 KEGG: cpi:Cpin_0797 glycoside hydrolase 25; PFAM: glycoside hydrolase, family 25; SMART: glycoside hydrolase, family 25 subgroup YP_004318597.1 KEGG: fps:FP2023 methylase of polypeptide chain release factors; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: methyltransferase small YP_004318598.1 PFAM: CMP/dCMP deaminase, zinc-binding; Bacterial bifunctional deaminase-reductase, C-terminal; manually curated; KEGG: phe:Phep_2177 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD YP_004318599.1 KEGG: fjo:Fjoh_4335 hypothetical protein YP_004318600.1 PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; KEGG: phe:Phep_2179 protein of unknown function UPF0029 YP_004318601.1 PFAM: nucleoside phosphorylase domain; KEGG: phe:Phep_2180 purine or other phosphorylase 1 YP_004318602.1 KEGG: phe:Phep_3846 helix-turn-helix type 11 domain protein YP_004318603.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: cpi:Cpin_2972 GCN5-related N-acetyltransferase YP_004318604.1 KEGG: dfe:Dfer_1457 YceI family protein; PFAM: lipid/polyisoprenoid-binding, YceI-like; SMART: lipid/polyisoprenoid-binding, YceI-like YP_004318605.1 PFAM: transposase, IS116/IS110/IS902; KEGG: eck:EC55989_4650 transposase, IS110 family YP_004318606.1 KEGG: phe:Phep_0199 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004318607.1 PFAM: PepSY-associated TM helix; KEGG: phe:Phep_0200 transmembrane protein YP_004318608.1 KEGG: phe:Phep_1935 hypothetical protein YP_004318609.1 KEGG: phe:Phep_1930 hypothetical protein YP_004318610.1 PFAM: FecR protein; KEGG: dfe:Dfer_5659 anti-FecI sigma factor, FecR YP_004318611.1 KEGG: phe:Phep_1932 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004318612.1 PFAM: UspA; KEGG: cpi:Cpin_0502 UspA domain protein YP_004318613.1 KEGG: dfe:Dfer_2849 hypothetical protein YP_004318614.1 PFAM: methyltransferase type 12; KEGG: dfe:Dfer_2850 methyltransferase type 12 YP_004318615.1 PFAM: Bacterial surface antigen (D15); KEGG: cpi:Cpin_3252 outer membrane protein YP_004318616.1 PFAM: Signal transduction histidine kinase, internal region; KEGG: cpi:Cpin_5162 signal transduction histidine kinase, LytS YP_004318617.1 KEGG: sli:Slin_3926 two component transcriptional regulator, LytTR family; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain YP_004318618.1 KEGG: phe:Phep_3862 5 nucleotidase deoxy cytosolic type C YP_004318619.1 KEGG: phe:Phep_3861 regulatory protein DeoR; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004318620.1 KEGG: phe:Phep_2076 hypothetical protein YP_004318621.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: cpi:Cpin_4939 protein of unknown function DUF214 YP_004318622.1 PFAM: ABC transporter-like; KEGG: cpi:Cpin_4940 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004318623.1 KEGG: phe:Phep_3127 efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004318624.1 PFAM: Outer membrane efflux protein; KEGG: phe:Phep_3126 outer membrane efflux protein YP_004318625.1 PFAM: Signal transduction histidine kinase, internal region; KEGG: phe:Phep_3125 histidine kinase internal region YP_004318626.1 KEGG: dfe:Dfer_0597 two component transcriptional regulator, LytTR family; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain YP_004318627.1 KEGG: bth:BT_0732 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004318628.1 KEGG: dfe:Dfer_5351 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004318629.1 KEGG: fjo:Fjoh_1685 hypothetical protein YP_004318630.1 PFAM: Kelch repeat type 1; KEGG: pdi:BDI_2349 hypothetical protein YP_004318631.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: cpi:Cpin_5157 aldo/keto reductase YP_004318632.1 PFAM: YkuD domain; KEGG: fjo:Fjoh_2219 hypothetical protein YP_004318633.1 KEGG: sus:acid_1898 hypothetical protein YP_004318634.1 SMART: DNA helicase, ATP-dependent, Ku type; TIGRFAM: Ku, prokaryotic type; KEGG: cpi:Cpin_0997 Ku protein; HAMAP: Ku, prokaryotic type; PFAM: DNA helicase, ATP-dependent, Ku type YP_004318635.1 KEGG: phe:Phep_2575 hypothetical protein YP_004318636.1 PFAM: glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; KEGG: phe:Phep_1212 glutamate dehydrogenase; SMART: glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal YP_004318637.1 HAMAP: DNA polymerase IV; KEGG: phe:Phep_1370 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like YP_004318638.1 TIGRFAM: DNA polymerase III subunit alpha; KEGG: phe:Phep_1371 DNA polymerase III subunit alpha; PFAM: Bacterial DNA polymerase III, subunit alpha YP_004318639.1 SMART: exonuclease; excinuclease ABC, C subunit, N-terminal; TIGRFAM: DNA polymerase III subunit epsilon; KEGG: phe:Phep_2656 DNA polymerase III subunit epsilon; PFAM: exonuclease, RNase T/DNA polymerase III; excinuclease ABC, C subunit, N-terminal YP_004318640.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: phe:Phep_3384 TonB-dependent receptor YP_004318641.1 KEGG: phe:Phep_3385 hypothetical protein YP_004318642.1 KEGG: hso:HS_0620 transcriptional regulator YP_004318643.1 KEGG: lby:Lbys_2077 phosphodiesterase I; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase YP_004318645.1 KEGG: zpr:ZPR_1351 hypothetical protein YP_004318646.1 KEGG: dfe:Dfer_5072 OmpA-related protein YP_004318647.1 TIGRFAM: dihydrolipoamide dehydrogenase; KEGG: phe:Phep_3001 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004318648.1 PFAM: patatin/phospholipase A2-related; KEGG: phe:Phep_3753 patatin YP_004318649.1 PFAM: nucleoside recognition; KEGG: bvu:BVU_1218 hypothetical protein YP_004318650.1 PFAM: peroxiredoxin, OsmC-like protein; KEGG: bgf:BC1003_2263 OsmC family protein YP_004318651.1 TIGRFAM: Bacterial pantothenate kinase; HAMAP: Bacterial pantothenate kinase; KEGG: cpi:Cpin_2317 pantothenate kinase YP_004318652.1 PFAM: Mechanosensitive ion channel MscS; KEGG: phe:Phep_1630 MscS mechanosensitive ion channel YP_004318653.1 KEGG: cpi:Cpin_2782 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004318654.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: cpi:Cpin_1261 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase YP_004318655.1 KEGG: hau:Haur_3650 hypothetical protein YP_004318656.1 PFAM: fructosamine/ketosamine-3-kinase; KEGG: gfo:GFO_0278 fructosamine kinase YP_004318657.1 TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; HAMAP: GTP-binding protein LepA; KEGG: phe:Phep_2070 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFG/EF2, C-terminal YP_004318658.1 HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: phe:Phep_2069 methylenetetrahydrofolate dehydrogenase (NADP(+)); PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_004318659.1 KEGG: rsl:RPSI07_0600 conserved exported protein of unknown function YP_004318660.1 PFAM: xylose isomerase, TIM barrel domain; KEGG: cpi:Cpin_0810 xylose isomerase domain protein TIM barrel YP_004318661.1 PFAM: thiamine synthesis ApbE/UPF0280; KEGG: phe:Phep_1135 ApbE family lipoprotein YP_004318662.1 PFAM: oxidoreductase, N-terminal; KEGG: phe:Phep_1134 oxidoreductase domain protein YP_004318663.1 PFAM: Sulphatase-modifying factor; KEGG: phe:Phep_1133 protein of unknown function DUF323 YP_004318664.1 PFAM: protein of unknown function DUF488; KEGG: nhl:Nhal_0774 protein of unknown function DUF488 YP_004318665.1 PFAM: Integrase, catalytic core, phage; KEGG: bfs:BF2284 phage integrase YP_004318666.1 KEGG: ngr:NAEGRDRAFT_78931 hypothetical protein YP_004318667.1 KEGG: tet:TTHERM_01068130 hypothetical protein YP_004318668.1 KEGG: mru:mru_2134 adhesin-like protein YP_004318669.1 KEGG: mcl:MCCL_1875 hypothetical protein YP_004318670.1 KEGG: dya:Dyak_GE13493 GE13493 gene product from transcript GE13493-RA YP_004318671.1 TIGRFAM: Phage tail tape measure protein TP901, core region; KEGG: pru:PRU_0913 prophage PRU01 tail tape measure protein YP_004318672.1 KEGG: aci:ACIAD1766 branched chain amino acid ABC transporter permease YP_004318673.1 KEGG: mdo:100031776 similar to polycystic kidney disease 1-like 2 YP_004318674.1 KEGG: lil:LA_1412 hypothetical protein YP_004318675.1 KEGG: htu:Htur_1198 hypothetical protein YP_004318676.1 KEGG: ana:all2688 type I restriction enzyme, modification chain YP_004318677.1 PFAM: cysteine, histidine-dependent amidohydrolase/peptidase; KEGG: fjo:Fjoh_2070 CHAP domain-containing protein YP_004318678.1 KEGG: fps:FP0786 hypothetical protein YP_004318679.1 KEGG: pru:PRU_0923 hypothetical protein YP_004318681.1 KEGG: pru:PRU_0944 hypothetical protein YP_004318682.1 KEGG: bfs:BF2313 hypothetical protein YP_004318683.1 KEGG: ptm:GSPATT00028369001 hypothetical protein YP_004318684.1 KEGG: ecw:EcE24377A_0818 hypothetical protein; PFAM: HNH endonuclease; SMART: HNH nuclease YP_004318685.1 KEGG: der:Dere_GG10108 GG10108 gene product from transcript GG10108-RA YP_004318686.1 KEGG: ske:Sked_33750 protein of unknown function (DUF1535) YP_004318687.1 KEGG: tet:TTHERM_00349080 hypothetical protein YP_004318688.1 KEGG: pru:PRU_0952 hypothetical protein YP_004318689.1 PFAM: peptidase S14, ClpP; KEGG: nhl:Nhal_0997 peptidase S14 ClpP YP_004318690.1 KEGG: cho:Chro.20242 zuotin related factor-1 YP_004318691.1 KEGG: pmm:PMM1002 aminopeptidase N YP_004318692.1 KEGG: lsp:Bsph_1103 hypothetical protein YP_004318693.1 KEGG: tna:CTN_0781 alpha amylase, catalytic region precursor YP_004318695.1 KEGG: pmx:PERMA_1599 DNA double-strand break repair protein Rad50 YP_004318696.1 KEGG: fjo:Fjoh_3566 hypothetical protein YP_004318697.1 KEGG: mcl:MCCL_0984 aspartate kinase YP_004318698.1 KEGG: tet:TTHERM_00373700 hypothetical protein YP_004318699.1 KEGG: aml:100483174 dopey family member 2 YP_004318700.1 KEGG: met:M446_7014 hypothetical protein YP_004318701.1 KEGG: phe:Phep_2234 oxidoreductase domain protein YP_004318702.1 KEGG: dfe:Dfer_0433 aminotransferase class-III YP_004318703.1 KEGG: ddf:DEFDS_0649 hypothetical protein YP_004318705.1 PFAM: C-5 cytosine methyltransferase; KEGG: rer:RER_22910 hypothetical protein YP_004318706.1 PFAM: VirE N-terminal; KEGG: pru:PRU_0958 DNA primase YP_004318707.1 KEGG: cro:ROD_26251 hypothetical protein YP_004318708.1 KEGG: aci:ACIAD3449 ssDNA-binding protein controls activity of RecBCD nuclease YP_004318709.1 KEGG: tdn:Suden_0115 transporter permease YP_004318710.1 KEGG: phu:Phum_PHUM399840 hypothetical protein YP_004318711.1 KEGG: mfe:Mefer_1614 hypothetical protein YP_004318712.1 KEGG: fps:FP0831 LuxR family transcriptional regulator; PFAM: transcription regulator LuxR, C-terminal; SMART: transcription regulator LuxR, C-terminal YP_004318713.1 KEGG: mka:MK1625 fused ferredoxin domain/DNA-binding domain-containing protein YP_004318714.1 KEGG: pdi:BDI_0372 hypothetical protein YP_004318715.1 KEGG: mru:mru_0240 DNA polymerase large subunit DP2 PolD2 YP_004318716.1 KEGG: edi:EDI_249400 cytoskeletal protein Sojo YP_004318717.1 KEGG: vex:VEA_000138 hypothetical protein YP_004318718.1 KEGG: sli:Slin_0557 hypothetical protein YP_004318719.1 KEGG: fjo:Fjoh_3566 hypothetical protein YP_004318720.1 TIGRFAM: tryptophanyl-tRNA synthetase, class Ib; KEGG: phe:Phep_2580 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib YP_004318721.1 KEGG: phe:Phep_2581 deoxynucleoside kinase; PFAM: deoxynucleoside kinase YP_004318722.1 PFAM: acylneuraminate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: phe:Phep_2582 3-deoxy-manno-octulosonate cytidylyltransferase YP_004318723.1 TIGRFAM: adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; KEGG: phe:Phep_2576 ATP/cobalamin adenosyltransferase; PFAM: adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type YP_004318724.1 PFAM: ABC transporter-like; KEGG: phe:Phep_2577 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004318725.1 KEGG: phe:Phep_2579 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004318726.1 KEGG: phe:Phep_0185 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004318727.1 PFAM: CTP synthase, N-terminal; glutamine amidotransferase class-I, C-terminal; TIGRFAM: CTP synthase; HAMAP: CTP synthase; KEGG: phe:Phep_2586 CTP synthetase YP_004318728.1 TIGRFAM: membrane insertion protein, OxaA/YidC; membrane insertion protein, OxaA/YidC, bacterial; HAMAP: membrane insertion protein, OxaA/YidC, bacterial; KEGG: phe:Phep_2587 60 kDa inner membrane insertion protein; PFAM: membrane insertion protein, OxaA/YidC YP_004318729.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: phe:Phep_2493 PAS sensor protein; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS YP_004318730.1 KEGG: phe:Phep_2492 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: Signal transduction response regulator, receiver domain; Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp YP_004318731.1 KEGG: phe:Phep_2491 hypothetical protein YP_004318732.1 TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; PFAM: HemN, C-terminal; radical SAM; KEGG: chu:CHU_1144 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_004318733.1 KEGG: phe:Phep_2482 copper-exporting ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase YP_004318734.1 KEGG: phe:Phep_2483 cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: cytochrome oxidase maturation protein cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type YP_004318735.1 TIGRFAM: cytochrome C oxidase cbb3-type, subunit I; cytochrome C oxidase monohaem subunit/FixO; KEGG: phe:Phep_2484 bifunctional cbb3-type cytochrome C oxidase subunit I/II; PFAM: cytochrome C oxidase monohaem subunit/FixO; cytochrome C oxidase subunit I YP_004318736.1 KEGG: phe:Phep_2485 hypothetical protein YP_004318737.1 PFAM: cytochrome C, class I; KEGG: sli:Slin_3560 cytochrome C class I YP_004318738.1 TIGRFAM: cytochrome C oxidase cbb3 type, accessory protein FixG; KEGG: phe:Phep_2487 cytochrome C oxidase accessory protein CcoG YP_004318739.1 PFAM: FixH; KEGG: phe:Phep_2488 FixH family protein YP_004318740.1 KEGG: phe:Phep_2489 integral membrane protein YP_004318741.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: phe:Phep_2068 Rieske (2Fe-2S) domain protein YP_004318742.1 KEGG: dfe:Dfer_0020 RNA methyltransferase TrmH, group 3 YP_004318743.1 KEGG: phe:Phep_1890 iron-sulfur cluster binding protein; TIGRFAM: 4Fe-4S cluster binding; PFAM: Domain of unknown function DUF1730; 4Fe-4S binding domain YP_004318744.1 KEGG: phe:Phep_1266 dihydroorotate dehydrogenase 2; manually curated; TIGRFAM: dihydroorotate dehydrogenase, class 2; PFAM: dihydroorotate dehydrogenase, class 1/ 2; HAMAP: dihydroorotate dehydrogenase, class 2 YP_004318745.1 KEGG: phe:Phep_1265 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004318746.1 KEGG: phe:Phep_1264 hypothetical protein YP_004318747.1 PFAM: thioesterase; KEGG: phe:Phep_1262 thioesterase superfamily protein YP_004318748.1 PFAM: protein of unknown function DUF55; KEGG: phe:Phep_1261 protein of unknown function DUF55 YP_004318749.1 PFAM: peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: phe:Phep_1444 peptidylprolyl isomerase, FKBP-type YP_004318750.1 KEGG: phe:Phep_1443 protein of unknown function DUF255 YP_004318751.1 PFAM: mandelate racemase/muconate lactonizing enzyme, C-terminal; mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: phe:Phep_1442 mandelate racemase/muconate lactonizing protein; SMART: mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004318752.1 KEGG: phe:Phep_3388 hypothetical protein YP_004318753.1 PFAM: peptidase M24, structural domain; Creatinase; KEGG: phe:Phep_4014 Xaa-Pro aminopeptidase YP_004318754.1 KEGG: phe:Phep_1231 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; PFAM: NTP pyrophosphohydrolase MazG, catalytic core YP_004318755.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: phe:Phep_1225 protein of unknown function DUF214 YP_004318756.1 PFAM: formyl transferase, N-terminal; formyl transferase, C-terminal; TIGRFAM: methionyl-tRNA formyltransferase; HAMAP: methionyl-tRNA formyltransferase; KEGG: phe:Phep_1221 methionyl-tRNA formyltransferase YP_004318757.1 KEGG: phe:Phep_1220 aminotransferase class IV; PFAM: Aminotransferase, class IV YP_004318758.1 TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: phe:Phep_1219 pseudouridine synthase; SMART: RNA-binding S4 YP_004318759.1 KEGG: cpi:Cpin_2137 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004318760.1 KEGG: sme:SMa1711 ArgI2 arginase YP_004318761.1 SMART: polyketide synthase, enoylreductase; TIGRFAM: quinone oxidoreductase , PIG3; KEGG: ote:Oter_0170 PIG3 family NAD(P)H quinone oxidoreductase; PFAM: alcohol dehydrogenase, C-terminal; alcohol dehydrogenase GroES-like YP_004318762.1 KEGG: zpr:ZPR_3496 site-specific recombinase; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal YP_004318763.1 KEGG: zpr:ZPR_3468 hypothetical protein YP_004318764.1 PFAM: antirestriction; KEGG: bth:BT_0079 anti-restriction protein YP_004318765.1 PFAM: transposase, IS4-like; KEGG: bth:BT_2222 transposase YP_004318766.1 PFAM: MTH538 TIR-like domain; KEGG: sbm:Shew185_4383 hypothetical protein YP_004318767.1 PFAM: peptidase C14, caspase catalytic; KEGG: sbm:Shew185_4384 peptidase C14 caspase catalytic subunit P20 YP_004318768.1 KEGG: lby:Lbys_0153 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004318769.1 KEGG: dsy:DSY0804 hypothetical protein YP_004318770.1 KEGG: lby:Lbys_0157 hypothetical protein YP_004318771.1 KEGG: lby:Lbys_0158 hypothetical protein YP_004318772.1 PFAM: Conjugative transposon, TraO; KEGG: lby:Lbys_0159 conjugative transposon protein trao YP_004318773.1 TIGRFAM: Conjugative transposon, TraN; KEGG: lby:Lbys_0160 conjugate transposon protein tran YP_004318774.1 TIGRFAM: Conjugative transposon, TraM; KEGG: lby:Lbys_0161 hypothetical protein YP_004318775.1 KEGG: lby:Lbys_0162 hypothetical protein YP_004318776.1 KEGG: lby:Lbys_0163 hypothetical protein YP_004318777.1 TIGRFAM: Conjugative transposon, TraK; KEGG: lby:Lbys_0164 hypothetical protein YP_004318778.1 KEGG: lby:Lbys_0165 traj family protein conjugative transposon; TIGRFAM: Conjugative transposon, TraJ; PFAM: Conjugative transposon, TraJ, C-terminal YP_004318779.1 KEGG: lby:Lbys_0166 hypothetical protein YP_004318780.1 TIGRFAM: Conjugation system ATPase, TraG; KEGG: lby:Lbys_0167 type IV secretory pathway VirB4 components-like protein YP_004318781.1 KEGG: lby:Lbys_0168 hypothetical protein YP_004318782.1 KEGG: lby:Lbys_0169 hypothetical protein YP_004318783.1 KEGG: fps:FP0735 DNA binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004318784.1 SMART: ATPase, AAA+ type, core; KEGG: hpl:HPB8_360 hypothetical protein YP_004318785.1 KEGG: lby:Lbys_0171 hypothetical protein YP_004318786.1 KEGG: lby:Lbys_0172 hypothetical protein YP_004318787.1 KEGG: lby:Lbys_0172 hypothetical protein YP_004318788.1 KEGG: lby:Lbys_0173 chromosome partitioning ATPase YP_004318789.1 KEGG: fjo:Fjoh_3714 hypothetical protein YP_004318790.1 PFAM: endonuclease relaxase, MobA/VirD2; KEGG: lby:Lbys_0176 relaxase/mobilization nuclease YP_004318791.1 KEGG: lby:Lbys_0178 hypothetical protein YP_004318792.1 KEGG: lby:Lbys_0944 transcriptional regulator, crp/fnr family; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding domain YP_004318793.1 PFAM: protein of unknown function DUF81; KEGG: lby:Lbys_0975 hypothetical protein YP_004318794.1 KEGG: msv:Mesil_2631 rhodanese domain protein; PFAM: beta-lactamase-like; Rhodanese-like; SMART: Rhodanese-like; beta-lactamase-like YP_004318795.1 KEGG: lby:Lbys_0972 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004318796.1 PFAM: methyltransferase type 11; KEGG: lic:LIC11062 hypothetical protein YP_004318797.1 KEGG: lby:Lbys_0971 hypothetical protein YP_004318798.1 KEGG: lby:Lbys_0970 hypothetical protein YP_004318799.1 KEGG: lby:Lbys_0969 thioredoxin; TIGRFAM: thioredoxin; PFAM: thioredoxin domain YP_004318800.1 PFAM: Domain of unknown function DUF395, YeeE/YedE; KEGG: lby:Lbys_0968 hypothetical protein YP_004318801.1 PFAM: Domain of unknown function DUF395, YeeE/YedE; KEGG: lby:Lbys_0966 hypothetical protein YP_004318802.1 PFAM: protein of unknown function DUF2490; KEGG: lby:Lbys_0965 hypothetical protein YP_004318803.1 KEGG: msv:Mesil_2631 rhodanese domain protein; PFAM: Rhodanese-like; beta-lactamase-like; SMART: Rhodanese-like; beta-lactamase-like YP_004318804.1 KEGG: pdi:BDI_2008 transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004318805.1 PFAM: Isochorismatase-like; KEGG: zpr:ZPR_2917 isochorismatase YP_004318807.1 KEGG: tca:655197 similar to CG9009-PA YP_004318808.1 KEGG: zpr:ZPR_1802 outer membrane protein YP_004318809.1 PFAM: Acriflavin resistance protein; KEGG: zpr:ZPR_1803 transport related membrane protein YP_004318810.1 KEGG: zpr:ZPR_2226 hypothetical protein; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004318811.1 PFAM: Alkyl hydroperoxide reductase subunit C/ thiol specific antioxidant; KEGG: cpi:Cpin_5421 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004318812.1 KEGG: phe:Phep_2256 hypothetical protein YP_004318813.1 KEGG: cpi:Cpin_7115 protein-disulfide reductase; PFAM: cytochrome C assembly protein, transmembrane domain YP_004318814.1 PFAM: Redoxin; KEGG: cpi:Cpin_5421 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004318815.1 PFAM: Redoxin; KEGG: phe:Phep_0061 redoxin domain protein YP_004318816.1 PFAM: Tetracycline regulation of excision, RteC; KEGG: fjo:Fjoh_4473 hypothetical protein YP_004318817.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: lby:Lbys_0184 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain YP_004318818.1 KEGG: lby:Lbys_0185 hypothetical protein YP_004318819.1 KEGG: lby:Lbys_0186 hypothetical protein YP_004318820.1 PFAM: Tetracycline regulation of excision, RteC; KEGG: lby:Lbys_0188 tetracycline regulation of excision, rtec YP_004318821.1 KEGG: tcx:Tcr_0835 hypothetical protein YP_004318822.1 PFAM: amidohydrolase; KEGG: sli:Slin_3234 amidohydrolase 3 YP_004318823.1 KEGG: zpr:ZPR_1248 exported peptidase; PFAM: peptidase S41; WD40-like beta Propeller; SMART: peptidase S41 YP_004318824.1 PFAM: methyltransferase type 11; KEGG: pjd:Pjdr2_2112 methyltransferase type 11 YP_004318825.1 PFAM: peptidase S1/S6, chymotrypsin/Hap; KEGG: phe:Phep_2930 peptidase S1 and S6 chymotrypsin/Hap YP_004318826.1 TIGRFAM: RNA polymerase sigma-70; KEGG: phe:Phep_2931 RNA polymerase sigma factor, sigma-70 family YP_004318827.1 KEGG: phe:Phep_2932 hypothetical protein YP_004318828.1 TIGRFAM: adenylosuccinate lyase; KEGG: phe:Phep_2933 adenylosuccinate lyase; PFAM: adenylosuccinate lyase C-terminal/plant; Lyase 1, N-terminal YP_004318829.1 KEGG: phe:Phep_2934 nitrogen-fixing NifU domain protein; PFAM: NIF system FeS cluster assembly, NifU-like scaffold, N-terminal; NIF system FeS cluster assembly, NifU, C-terminal; SMART: NIF system FeS cluster assembly, NifU-like scaffold, N-terminal YP_004318830.1 KEGG: phe:Phep_2935 inositol monophosphatase; PFAM: inositol monophosphatase YP_004318831.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: phe:Phep_2936 prolipoprotein diacylglyceryl transferase YP_004318832.1 KEGG: chu:CHU_3543 hypothetical protein YP_004318833.1 TIGRFAM: citrate synthase, type II; KEGG: phe:Phep_2053 citrate synthase I; PFAM: citrate synthase-like YP_004318834.1 KEGG: phe:Phep_2052 hypothetical protein YP_004318835.1 PFAM: Penicillinase repressor; KEGG: cpi:Cpin_5136 CopY family transcriptional regulator YP_004318836.1 PFAM: peptidase M56, BlaR1; TonB-dependent receptor, plug; KEGG: lby:Lbys_1904 peptidase M56 blar1 YP_004318837.1 PFAM: Uncharacterised protein family, bacteroidetes; KEGG: zpr:ZPR_4167 hypothetical protein YP_004318838.1 KEGG: lby:Lbys_2217 TonB-dependent receptor plug YP_004318839.1 PFAM: Crotonase, core; KEGG: fps:FP0183 enoyl-CoA hydratase/isomerase YP_004318840.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ppd:Ppro_0332 TetR family transcriptional regulator YP_004318841.1 PFAM: Outer membrane efflux protein; KEGG: cpi:Cpin_1967 outer membrane efflux protein YP_004318842.1 KEGG: cpi:Cpin_1968 efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004318843.1 KEGG: chu:CHU_0941 acriflavin resistance protein D; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004318844.1 PFAM: protein of unknown function DUF2147; KEGG: phe:Phep_3048 hypothetical protein YP_004318845.1 PFAM: NUDIX hydrolase domain; TIGRFAM: Isopentenyl-diphosphate delta-isomerase, type 1; HAMAP: Isopentenyl-diphosphate delta-isomerase, type 1; KEGG: cpi:Cpin_4731 isopentenyl-diphosphate delta-isomerase, type 1 YP_004318846.1 PFAM: methyltransferase small; KEGG: phe:Phep_2972 methyltransferase small YP_004318847.1 KEGG: cpi:Cpin_5417 twin-arginine translocation pathway signal YP_004318848.1 PFAM: oxidoreductase, N-terminal; KEGG: phe:Phep_3649 oxidoreductase domain protein YP_004318849.1 PFAM: glucose-methanol-choline oxidoreductase, N-terminal; FAD dependent oxidoreductase; KEGG: pat:Patl_2686 glucose-methanol-choline oxidoreductase YP_004318850.1 KEGG: lby:Lbys_1016 nucleoside:proton symporter YP_004318851.1 SMART: cystathionine beta-synthase, core; TIGRFAM: IMP dehydrogenase; KEGG: phe:Phep_1594 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; cystathionine beta-synthase, core YP_004318852.1 KEGG: phe:Phep_4201 peptide chain release factor 3; TIGRFAM: peptide chain release factor 3; Small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding YP_004318853.1 KEGG: phe:Phep_0064 hypothetical protein YP_004318854.1 KEGG: phe:Phep_0063 hypothetical protein YP_004318855.1 KEGG: phe:Phep_0062 hypothetical protein YP_004318856.1 KEGG: fjo:Fjoh_1874 hypothetical protein YP_004318857.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: phe:Phep_1918 TonB-dependent receptor YP_004318858.1 KEGG: phe:Phep_1922 cell surface protein YP_004318859.1 TIGRFAM: gamma-glutamyl phosphate reductase GPR; HAMAP: glutamate-5-semialdehyde dehydrogenase; KEGG: cpb:Cphamn1_0861 gamma-glutamyl phosphate reductase YP_004318860.1 SMART: Pseudouridine synthase/archaeosine transglycosylase; TIGRFAM: glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; KEGG: cts:Ctha_1447 gamma-glutamyl kinase; HAMAP: glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; PFAM: aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase YP_004318861.1 PFAM: UspA; KEGG: fbc:FB2170_14468 universal stress protein UspA YP_004318862.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: tye:THEYE_A0116 transcriptional regulator, TetR family YP_004318863.1 KEGG: xca:xccb100_3290 adenylosuccinate synthetase YP_004318864.1 PFAM: peptidase M23; KEGG: rmr:Rmar_1597 peptidase M23 YP_004318865.1 PFAM: deoxyribonuclease, TatD-related; KEGG: fps:FP1746 TatD-related DNase YP_004318866.1 PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: lby:Lbys_1163 uba/ThiF-type nad/fad binding protein YP_004318867.1 KEGG: zpr:ZPR_3452 hypothetical protein YP_004318868.1 PFAM: HTH transcriptional regulator, MarR; KEGG: fjo:Fjoh_2212 hypothetical protein YP_004318869.1 KEGG: fba:FIC_00793 hypothetical protein YP_004318870.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: zpr:ZPR_4068 heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase YP_004318871.1 TIGRFAM: Secretion protein HlyD; KEGG: dfe:Dfer_1589 efflux transporter RND family, MFP subunit YP_004318872.1 KEGG: coc:Coch_0147 heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; Outer membrane efflux protein YP_004318873.1 KEGG: ngr:NAEGRDRAFT_35199 hypothetical protein YP_004318874.1 PFAM: Drug/metabolite transporter; KEGG: cpi:Cpin_1584 protein of unknown function DUF6 transmembrane YP_004318875.1 PFAM: Domain of unknown function DUF1508; KEGG: phe:Phep_3003 protein of unknown function DUF1508 YP_004318876.1 KEGG: lsp:Bsph_4771 pigment production hydroxylase YP_004318877.1 KEGG: cpi:Cpin_0720 nicotinamide mononucleotide transporter PnuC; TIGRFAM: Nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC YP_004318878.1 PFAM: Uncharacterised protein family UPF0118; KEGG: dfe:Dfer_4013 protein of unknown function UPF0118 YP_004318879.1 PFAM: DNA topoisomerase, type IA, central; Toprim domain; KEGG: phe:Phep_2044 DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain YP_004318880.1 PFAM: protein of unknown function DUF980; KEGG: phe:Phep_0178 protein of unknown function DUF980 YP_004318881.1 KEGG: phe:Phep_2271 aldehyde dehydrogenase; PFAM: aldehyde dehydrogenase domain YP_004318882.1 PFAM: peptidase M16, C-terminal; KEGG: phe:Phep_1590 peptidase M16 domain protein YP_004318883.1 PFAM: peptidase M16, C-terminal; peptidase M16, N-terminal; KEGG: phe:Phep_1589 peptidase M16 domain protein YP_004318884.1 KEGG: phe:Phep_1217 pyridoxal-5'-phosphate-dependent protein subunit beta; PFAM: pyridoxal phosphate-dependent enzyme, beta subunit YP_004318885.1 TIGRFAM: L-lysine 6-transaminase; KEGG: phe:Phep_1211 L-lysine aminotransferase; PFAM: Aminotransferase class-III YP_004318886.1 PFAM: Domain of unknown function DUF21; cystathionine beta-synthase, core; transporter-associated domain; KEGG: fps:FP1358 hypothetical protein YP_004318887.1 KEGG: sli:Slin_3263 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004318888.1 PFAM: Iron sulphur-containing domain, CDGSH-type; KEGG: phe:Phep_2426 zinc finger CDGSH-type domain protein YP_004318889.1 PFAM: NUDIX hydrolase domain; KEGG: phe:Phep_0649 NUDIX hydrolase YP_004318890.1 KEGG: cpi:Cpin_0995 DNA topoisomerase YP_004318891.1 PFAM: beta-ketoacyl synthase, N-terminal; 2-nitropropane dioxygenase, NPD; beta-ketoacyl synthase, C-terminal; acyl transferase; polyketide synthase, KR; KEGG: cpi:Cpin_1450 erythronolide synthase; SMART: polyketide synthase, beta-ketoacyl synthase domain; polyketide synthase, acyl transferase domain; polyketide synthase/Fatty acid synthase, KR YP_004318892.1 PFAM: beta-ketoacyl synthase, C-terminal; beta-ketoacyl synthase, N-terminal; 4'-phosphopantetheinyl transferase; KEGG: cpi:Cpin_1449 beta-ketoacyl synthase; SMART: polyketide synthase, beta-ketoacyl synthase domain; polyketide synthase, acyl transferase domain YP_004318893.1 KEGG: cpi:Cpin_1448 hypothetical protein YP_004318894.1 KEGG: lpa:lpa_01764 cyclopropane fatty acyl phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase YP_004318895.1 manually curated; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; KEGG: cpi:Cpin_3428 drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004318896.1 PFAM: Fatty acid desaturase, type 1; Sphingolipid delta4-desaturase, N-terminal; KEGG: cpi:Cpin_5868 fatty acid desaturase YP_004318897.1 PFAM: Haem oxygenase-like; KEGG: phe:Phep_3915 heme oxygenase YP_004318898.1 PFAM: transposase, IS4-like; KEGG: bvu:BVU_1595 transposase YP_004318899.1 KEGG: nve:NEMVE_v1g86461 hypothetical protein YP_004318900.1 KEGG: cpi:Cpin_7210 peptidase S41; PFAM: peptidase S41; SMART: peptidase S41 YP_004318901.1 KEGG: cpi:Cpin_7213 hypothetical protein YP_004318902.1 KEGG: pcs:Pc16g12080 Pc16g12080 YP_004318903.1 KEGG: cpi:Cpin_7214 hypothetical protein YP_004318904.1 KEGG: cpi:Cpin_7215 hypothetical protein YP_004318905.1 KEGG: cpi:Cpin_7216 hypothetical protein YP_004318906.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: cpi:Cpin_7217 TonB-dependent receptor YP_004318907.1 PFAM: Periplasmic binding protein; KEGG: cpi:Cpin_7224 periplasmic binding protein YP_004318908.1 PFAM: ABC transporter permease; KEGG: cpi:Cpin_7223 transporter permease YP_004318909.1 PFAM: ABC transporter-like; KEGG: dfe:Dfer_3537 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004318910.1 KEGG: fjo:Fjoh_4270 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004318911.1 KEGG: cpi:Cpin_6456 anti-FecI sigma factor, FecR YP_004318912.1 PFAM: methyltransferase type 11; KEGG: ana:alr1520 hypothetical protein YP_004318913.1 PFAM: Amino acid permease domain; KEGG: ana:alr1519 amino acid transporter YP_004318914.1 KEGG: cpi:Cpin_1442 hypothetical protein YP_004318915.1 PFAM: Condensation domain; KEGG: cpi:Cpin_1443 alcohol acetyltransferase YP_004318916.1 PFAM: alcohol acetyltransferase; KEGG: cpi:Cpin_1444 condensation domain protein YP_004318917.1 KEGG: cpi:Cpin_1445 glycosyltransferase, MGT family; TIGRFAM: UDP-glycosyltransferase, MGT; PFAM: glycosyl transferase, family 28, C-terminal YP_004318918.1 KEGG: cpi:Cpin_1446 glycosyltransferase, MGT family; TIGRFAM: UDP-glycosyltransferase, MGT; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase YP_004318919.1 PFAM: alpha/beta hydrolase fold-1; KEGG: cpi:Cpin_1447 alpha/beta hydrolase fold protein YP_004318920.1 PFAM: protein of unknown function DUF307; KEGG: dfe:Dfer_3318 protein of unknown function DUF307 YP_004318921.1 KEGG: clu:CLUG_00339 hypothetical protein YP_004318922.1 KEGG: dfe:Dfer_0157 hypothetical protein YP_004318923.1 KEGG: cpi:Cpin_6409 hypothetical protein YP_004318924.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: cpi:Cpin_6408 TonB-dependent receptor YP_004318925.1 KEGG: phu:Phum_PHUM311470 hypothetical protein YP_004318928.1 KEGG: phe:Phep_1891 hypothetical protein YP_004318929.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold-3; PAS fold-4; KEGG: gfo:GFO_2634 two-component system sensor histidine kinase; SMART: ATPase-like, ATP-binding domain; PAC motif YP_004318930.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dfe:Dfer_5596 major facilitator superfamily MFS_1 YP_004318931.1 KEGG: hje:HacjB3_01365 cell surface protein/lipoprotein YP_004318932.1 KEGG: tcr:508151.20 mucin-associated surface protein (MASP) YP_004318933.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: cpi:Cpin_0149 short-chain dehydrogenase/reductase SDR YP_004318934.1 KEGG: mgm:Mmc1_2196 hemolysin-type calcium-binding region YP_004318935.1 PFAM: protein of unknown function DUF892; KEGG: cpi:Cpin_5857 protein of unknown function DUF892 YP_004318936.1 PFAM: protein of unknown function DUF1264; KEGG: dfe:Dfer_1678 protein of unknown function DUF1264 YP_004318937.1 KEGG: dfe:Dfer_0362 damage inducible protein CinA; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal YP_004318938.1 PFAM: Uncharacterised protein family UPF0118; KEGG: ote:Oter_3895 hypothetical protein YP_004318939.1 TIGRFAM: Molybdenum cofactor synthesis; PFAM: Molybdopterin cofactor biosynthesis C (MoaC) domain; Molybdopterin binding; KEGG: dfe:Dfer_3066 bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; SMART: Molybdopterin binding YP_004318940.1 PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; KEGG: fjo:Fjoh_4639 UBA/ThiF-type NAD/FAD binding protein YP_004318941.1 PFAM: thiamineS; KEGG: dfe:Dfer_3068 thiamineS protein YP_004318942.1 PFAM: protein of unknown function DUF81; KEGG: chu:CHU_0807 hypothetical protein YP_004318943.1 TIGRFAM: Molybdenum cofactor synthesis; PFAM: MoeA, N-terminal and linker domain; Molybdopterin binding; MoeA, C-terminal, domain IV; KEGG: dfe:Dfer_3069 molybdenum cofactor synthesis protein; SMART: Molybdopterin binding YP_004318944.1 TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: radical SAM; Molybdenum cofactor synthesis C-terminal; KEGG: cpi:Cpin_4135 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB YP_004318945.1 KEGG: npu:Npun_F1862 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_004318946.1 KEGG: dfe:Dfer_5191 protein of unknown function DUF182; PFAM: XdhC- CoxI YP_004318947.1 KEGG: cpi:Cpin_0229 cysteine desulfurase; PFAM: Aminotransferase, class V/cysteine desulfurase YP_004318948.1 KEGG: fjo:Fjoh_4634 rubredoxin-type Fe(Cys)4 protein YP_004318949.1 KEGG: fjo:Fjoh_4630 hypothetical protein YP_004318950.1 KEGG: chu:CHU_1317 response regulator; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004318951.1 KEGG: fjo:Fjoh_4627 multi-sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain YP_004318952.1 PFAM: formate/nitrite transporter; KEGG: pjd:Pjdr2_5915 formate/nitrite transporter YP_004318953.1 KEGG: fjo:Fjoh_4625 nitrite reductase (NAD(P)H), small subunit; TIGRFAM: nitrite reductase [NAD(P)H] large subunit, NirD; PFAM: Rieske [2Fe-2S] iron-sulphur domain YP_004318954.1 TIGRFAM: nitrite reductase [NAD(P)H] large subunit, NirB; KEGG: chu:CHU_1332 assimilatory nitrite reductase (NAD(P)H) large subunit precursor; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding domain; nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; nitrite/sulphite reductase 4Fe-4S domain YP_004318955.1 KEGG: lby:Lbys_1791 uroporphyrinogeN-III C-methyltransferase YP_004318956.1 TIGRFAM: uroporphyrin-III C-methyltransferase, C-terminal; KEGG: lby:Lbys_1791 uroporphyrinogeN-III C-methyltransferase; PFAM: Tetrapyrrole methylase YP_004318958.1 TIGRFAM: Molybdenum cofactor synthesis; PFAM: MoeA, N-terminal and linker domain; Molybdopterin binding; KEGG: lbf:LBF_2685 molybdopterin biosynthesis enzyme; SMART: Molybdopterin binding YP_004318959.1 PFAM: Major facilitator superfamily MFS-1; KEGG: cpi:Cpin_2381 major facilitator superfamily MFS_1 YP_004318960.1 PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding domain; KEGG: cpi:Cpin_2380 molybdopterin oxidoreductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain YP_004318961.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dfe:Dfer_2063 rubredoxin-type Fe(Cys)4 protein YP_004318962.1 KEGG: phe:Phep_2076 hypothetical protein YP_004318963.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: phe:Phep_3704 regulatory protein TetR YP_004318964.1 KEGG: sli:Slin_3758 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004318965.1 KEGG: cat:CA2559_00470 hypothetical protein YP_004318966.1 PFAM: ABC transporter transmembrane domain; ABC transporter-like; KEGG: phe:Phep_2232 ABC transporter; SMART: ATPase, AAA+ type, core YP_004318967.1 PFAM: ABC transporter-like; ABC transporter transmembrane domain; KEGG: phe:Phep_2233 ABC transporter; SMART: ATPase, AAA+ type, core YP_004318968.1 PFAM: peptidase M61; KEGG: fps:FP0910 M61 family peptidase YP_004318969.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pap:PSPA7_3302 major facilitator superfamily transporter YP_004318970.1 PFAM: pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: cpi:Cpin_6715 pyridoxamine 5'-phosphate oxidase-related FMN-binding YP_004318971.1 KEGG: zpr:ZPR_2163 hypothetical protein YP_004318972.1 KEGG: zpr:ZPR_2162 membrane protein YP_004318973.1 KEGG: zpr:ZPR_2161 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004318974.1 KEGG: zpr:ZPR_2160 hypothetical protein YP_004318975.1 KEGG: pat:Patl_2903 anhydro-N-acetylmuramic acid kinase; HAMAP: Anhydro-N-acetylmuramic acid kinase; PFAM: Anhydro-N-acetylmuramic acid kinase YP_004318976.1 PFAM: peptidase S41; KEGG: srm:SRM_00370 peptidase, S41 family YP_004318977.1 KEGG: sli:Slin_1285 beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase, family 20, catalytic core; glycoside hydrolase, family 20, C-terminal YP_004318978.1 KEGG: tde:TDE0513 hypothetical protein YP_004318979.1 KEGG: bay:RBAM_031060 YvaV YP_004318980.1 PFAM: MgtC/SapB transporter; KEGG: cpi:Cpin_4064 MgtC/SapB transporter YP_004318981.1 PFAM: protein of unknown function DUF2490; KEGG: cat:CA2559_04575 hypothetical protein YP_004318982.1 KEGG: rbi:RB2501_08245 hypothetical protein YP_004318983.1 PFAM: Amino acid permease domain; KEGG: fjo:Fjoh_3147 amino acid permease-associated region YP_004318984.1 KEGG: cel:C01H6.4 hypothetical protein YP_004318985.1 KEGG: vsp:VS_0221 glycosyltransferase YP_004318986.1 manually curated; TIGRFAM: YbhB/YbcL; KEGG: nmu:Nmul_A1784 YbhB and YbcL; PFAM: phosphatidylethanolamine-binding protein PEBP YP_004318987.1 PFAM: glycosyl transferase, family 9; KEGG: nmu:Nmul_A1781 glycosyl transferase YP_004318988.1 PFAM: glycosyl transferase, group 1; KEGG: nmu:Nmul_A1782 glycosyltransferase YP_004318989.1 KEGG: nmu:Nmul_A1794 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004318990.1 KEGG: phe:Phep_3508 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004318991.1 KEGG: bae:BATR1942_06305 hypothetical protein; PFAM: chloramphenicol acetyltransferase YP_004318993.1 PFAM: ATP-grasp fold, RimK-type; KEGG: cyn:Cyan7425_0326 RimK domain protein ATP-grasp YP_004318994.1 KEGG: npu:Npun_F2189 RimK domain-containing protein ATP-grasp; manually curated; PFAM: ATP-grasp fold, RimK-type YP_004318995.1 KEGG: cyn:Cyan7425_0324 hypothetical protein YP_004318996.1 PFAM: Drug/metabolite transporter; KEGG: lby:Lbys_1080 hypothetical protein YP_004318997.1 KEGG: gmc:GY4MC1_2970 IstB domain protein ATP-binding protein YP_004318998.1 TIGRFAM: PAS; KEGG: dba:Dbac_1193 PAS/PAC sensor signal transduction histidine kinase YP_004318999.1 KEGG: dfe:Dfer_1490 malto-oligosyltrehalose trehalohydrolase; PFAM: glycosyl hydrolase, family 13, catalytic domain; manually curated; TIGRFAM: Malto-oligosyltrehalose trehalohydrolase; SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain YP_004319000.1 PFAM: protein of unknown function DUF892; KEGG: cpi:Cpin_0993 protein of unknown function DUF892 YP_004319001.1 KEGG: cpi:Cpin_6492 hypothetical protein YP_004319002.1 KEGG: bge:BC1002_5675 binding-protein-dependent transport systems inner membrane component YP_004319003.1 KEGG: chu:CHU_2072 hypothetical protein YP_004319004.1 KEGG: bac:BamMC406_6277 FRG domain-containing protein; PFAM: FRG domain; SMART: FRG domain YP_004319005.1 KEGG: dfe:Dfer_0835 alcohol dehydrogenase GroES domain protein; PFAM: alcohol dehydrogenase GroES-like; alcohol dehydrogenase, C-terminal; SMART: polyketide synthase, enoylreductase YP_004319006.1 PFAM: Streptomyces cyclase/dehydrase; KEGG: phe:Phep_1322 cyclase/dehydrase YP_004319007.1 PFAM: protein of unknown function DUF72; KEGG: sus:acid_2024 hypothetical protein YP_004319008.1 KEGG: cpi:Cpin_6495 hypothetical protein YP_004319009.1 KEGG: cpi:Cpin_6495 hypothetical protein YP_004319010.1 KEGG: ttr:Tter_1728 hypothetical protein YP_004319011.1 PFAM: glycosyl hydrolase, family 13, catalytic domain; KEGG: cyc:PCC7424_3928 alpha amylase catalytic region; SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain YP_004319012.1 KEGG: cpi:Cpin_5769 alpha amylase catalytic region; PFAM: glycosyl hydrolase, family 13, catalytic domain; SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain YP_004319013.1 KEGG: phe:Phep_2635 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004319014.1 KEGG: rsl:RPSI07_mp0109 endoglucanase precursor (endo-1,4-beta-glucanase) (cellulase) YP_004319015.1 KEGG: tbr:Tb927.7.6600 hypothetical protein YP_004319016.1 KEGG: cel:F48F5.1 hypothetical protein YP_004319017.1 KEGG: cpi:Cpin_6775 ATPase; K06915 YP_004319018.1 KEGG: fjo:Fjoh_2708 UspA domain-containing protein YP_004319019.1 KEGG: cpi:Cpin_5534 hypothetical protein YP_004319020.1 PFAM: metallo-dependent phosphatase; KEGG: cpi:Cpin_5533 metallophosphoesterase YP_004319021.1 KEGG: phe:Phep_2735 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004319022.1 KEGG: phe:Phep_2735 response regulator receiver; PFAM: transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: transcription regulator LuxR, C-terminal YP_004319023.1 KEGG: dfe:Dfer_1796 GCN5-related N-acetyltransferase YP_004319025.1 KEGG: sbp:Sbal223_2945 tryptophan halogenase YP_004319026.1 KEGG: ooe:OEOE_1297 transcriptional regulator YP_004319027.1 TIGRFAM: glucose-6-phosphate dehydrogenase-related, F420-dependent; KEGG: ddr:Deide_3p02310 5,10-methylenetetrahydromethanopterin reductase YP_004319028.1 KEGG: sli:Slin_5293 hypothetical protein YP_004319029.1 PFAM: carbamoyltransferase; KEGG: cpi:Cpin_5039 carbamoyltransferase YP_004319030.1 KEGG: cpi:Cpin_5040 glycosyl transferase 2; manually curated; PFAM: glycosyl transferase, family 2 YP_004319031.1 PFAM: glycosyl transferase, family 9; KEGG: dfe:Dfer_5589 glycosyl transferase 9 YP_004319032.1 PFAM: glycosyl transferase, family 9; KEGG: cpi:Cpin_5042 glycosyl transferase 9 YP_004319033.1 KEGG: cpi:Cpin_5043 cytidyltransferase-related domain protein; TIGRFAM: Cytidyltransferase-related; PFAM: carbohydrate/purine kinase; Cytidylyltransferase YP_004319034.1 KEGG: cpi:Cpin_5044 hydrolase, HAD-superfamily, subfamily IIIA; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; histidinol-phosphate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase YP_004319035.1 TIGRFAM: phosphoheptose isomerase, subgroup; HAMAP: phosphoheptose isomerase; KEGG: nmu:Nmul_A1795 phosphoheptose isomerase; PFAM: glycosyl transferase, group 1; Sugar isomerase (SIS) YP_004319036.1 KEGG: fjo:Fjoh_2644 hypothetical protein YP_004319037.1 KEGG: cpi:Cpin_6492 hypothetical protein YP_004319038.1 KEGG: gem:GM21_3445 outer membrane protein YP_004319039.1 KEGG: phe:Phep_1416 protein of unknown function DUF1452 YP_004319040.1 KEGG: cpi:Cpin_3966 NAD-dependent aldehyde dehydrogenase; TIGRFAM: Conserved hypothetical protein CHP02284; PFAM: Domain of unknown function DUF2383 YP_004319041.1 KEGG: cal:CaO19.2647 potential fungal Zn(2)-Cys(6) binuclear cluster domain similar to that of HAP1 YP_004319042.1 KEGG: sfu:Sfum_1664 two component LuxR family transcriptional regulator; PFAM: transcription regulator LuxR, C-terminal; SMART: transcription regulator LuxR, C-terminal YP_004319043.1 PFAM: DNA helicase, UvrD/REP type; KEGG: nth:Nther_2813 UvrD/REP helicase YP_004319044.1 KEGG: sli:Slin_4043 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319045.1 KEGG: iag:Igag_0977 hypothetical protein YP_004319046.1 KEGG: phe:Phep_2739 alcohol dehydrogenase GroES domain protein; PFAM: alcohol dehydrogenase GroES-like; alcohol dehydrogenase, C-terminal YP_004319048.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: phe:Phep_1004 OmpA/MotB domain protein YP_004319049.1 KEGG: chu:CHU_3778 hypothetical protein YP_004319050.1 KEGG: cpi:Cpin_6081 oxidoreductase domain protein; PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal YP_004319051.1 KEGG: dfe:Dfer_3432 transcriptional regulator, DeoR family; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004319052.1 KEGG: cpi:Cpin_5021 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004319053.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sli:Slin_0840 major facilitator superfamily MFS_1 YP_004319054.1 PFAM: Cold-shock protein, DNA-binding; KEGG: aar:Acear_1983 cold-shock DNA-binding protein family YP_004319055.1 KEGG: dfe:Dfer_3155 D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase N-terminal; FAD-linked oxidase C-terminal YP_004319056.1 KEGG: phe:Phep_1602 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004319057.1 PFAM: Major facilitator superfamily MFS-1; KEGG: phe:Phep_1603 major facilitator superfamily MFS_1 YP_004319058.1 KEGG: pbe:PB001144.01.0 hypothetical protein YP_004319059.1 KEGG: chu:CHU_1498 hypothetical protein YP_004319060.1 PFAM: Cation/H+ exchanger; KEGG: chu:CHU_3520 Na+/H+-exchanging protein (Na+/H+ antiporter) YP_004319061.1 KEGG: fjo:Fjoh_0579 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain YP_004319062.1 KEGG: chu:CHU_3518 two component sensor protein YP_004319063.1 KEGG: phe:Phep_2973 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein YP_004319064.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: sli:Slin_3170 TonB-dependent receptor YP_004319065.1 KEGG: ppe:PEPE_1785 hypothetical protein YP_004319066.1 KEGG: dfe:Dfer_0259 hypothetical protein YP_004319067.1 KEGG: fba:FIC_01711 two-component hybrid sensor and regulator; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004319068.1 KEGG: lby:Lbys_3556 hypothetical protein YP_004319069.1 KEGG: dfe:Dfer_3418 SMC domain protein YP_004319070.1 KEGG: dfe:Dfer_3506 nuclease SbcCD, D subunit; TIGRFAM: exonuclease SbcD; PFAM: metallo-dependent phosphatase YP_004319071.1 PFAM: protein of unknown function DUF81; KEGG: fjo:Fjoh_3317 hypothetical protein YP_004319072.1 PFAM: protein of unknown function DUF1634; KEGG: fjo:Fjoh_3318 hypothetical protein YP_004319073.1 KEGG: cpi:Cpin_6779 glyoxylate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004319074.1 KEGG: sro:Sros_8902 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004319075.1 KEGG: phe:Phep_2928 peroxidase; PFAM: Alkyl hydroperoxide reductase subunit C/ thiol specific antioxidant; peroxiredoxin, C-terminal YP_004319076.1 KEGG: phe:Phep_2460 hypothetical protein YP_004319077.1 KEGG: phe:Phep_3063 beta-lactamase; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004319078.1 manually curated; KEGG: chu:CHU_2786 hypothetical protein YP_004319079.1 PFAM: Outer membrane lipoprotein carrier protein LolA; KEGG: phe:Phep_3064 outer membrane lipoprotein carrier protein LolA YP_004319080.1 KEGG: phe:Phep_3065 cell divisionFtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma YP_004319081.1 KEGG: phe:Phep_0053 hypothetical protein YP_004319082.1 KEGG: phe:Phep_0666 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004319083.1 TIGRFAM: gamma-glutamyltranspeptidase; KEGG: phe:Phep_3731 gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_004319084.1 HAMAP: glycerol-3-phosphate dehydrogenase, NAD-dependent; KEGG: phe:Phep_0664 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); PFAM: glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal; glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal YP_004319085.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_0713 RagB/SusD domain protein YP_004319086.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_0714 TonB-dependent receptor plug YP_004319087.1 TIGRFAM: Gliding motility-associated protein, GldC; KEGG: phe:Phep_3226 hypothetical protein YP_004319088.1 KEGG: phe:Phep_3227 hypothetical protein YP_004319089.1 KEGG: phe:Phep_3228 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004319090.1 KEGG: phe:Phep_3229 dihydroorotase; PFAM: Amidohydrolase 1 YP_004319091.1 PFAM: peptidase S66, LD-carboxypeptidase A; KEGG: gfo:GFO_2758 muramoyltetrapeptide carboxypeptidase YP_004319092.1 KEGG: dfe:Dfer_4236 peptidase M14 carboxypeptidase A; PFAM: peptidase M14, carboxypeptidase A; SMART: peptidase M14, carboxypeptidase A YP_004319093.1 PFAM: NLP/P60; KEGG: fbc:FB2170_06045 peptidase YP_004319094.1 KEGG: cpi:Cpin_6563 N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; PFAM: peptidase T2, asparaginase 2 YP_004319095.1 KEGG: cpi:Cpin_6564 CutC family protein; HAMAP: Copper homeostasis protein cutC; PFAM: CutC YP_004319096.1 SMART: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: chu:CHU_2987 glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004319097.1 KEGG: phe:Phep_3294 hypothetical protein YP_004319098.1 KEGG: phe:Phep_3293 6-phosphofructokinase; manually curated; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase domain; HAMAP: phosphofructokinase YP_004319099.1 PFAM: NUDIX hydrolase domain; KEGG: phe:Phep_3292 NUDIX hydrolase YP_004319100.1 KEGG: phe:Phep_3291 N-acetylglucosamine kinase YP_004319101.1 TIGRFAM: Lumazine-binding protein; KEGG: phe:Phep_3288 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein YP_004319102.1 PFAM: Major facilitator superfamily MFS-1; KEGG: cpi:Cpin_5086 major facilitator superfamily MFS_1 YP_004319103.1 KEGG: cpi:Cpin_5093 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004319104.1 KEGG: phe:Phep_3286 hypothetical protein YP_004319105.1 PFAM: RagB/SusD; KEGG: cpi:Cpin_0565 RagB/SusD domain protein YP_004319106.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: cpi:Cpin_0566 TonB-dependent receptor YP_004319107.1 KEGG: ncr:NCU07514 hypothetical protein YP_004319108.1 PFAM: peptidase S45, penicillin amidase; KEGG: phe:Phep_3311 peptidase S45 penicillin amidase YP_004319109.1 KEGG: phe:Phep_3312 hypothetical protein YP_004319110.1 KEGG: phe:Phep_3313 hypothetical protein YP_004319111.1 PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib; HAMAP: Tyrosyl-tRNA synthetase, class Ib; KEGG: phe:Phep_3316 tyrosyl-tRNA synthetase YP_004319112.1 KEGG: phe:Phep_3317 hypothetical protein YP_004319113.1 PFAM: Amino acid permease domain; KEGG: dfe:Dfer_4823 amino acid permease-associated region YP_004319114.1 KEGG: phe:Phep_0884 K potassium transporter; HAMAP: Potassium uptake protein, low affinity, Kup; PFAM: K+ potassium transporter YP_004319115.1 KEGG: phe:Phep_0883 hypothetical protein YP_004319116.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: phe:Phep_0882 fumarylacetoacetate hydrolase YP_004319117.1 PFAM: peptidase M23; KEGG: phe:Phep_0881 peptidase M23 YP_004319118.1 KEGG: phe:Phep_0880 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase subunit C/ thiol specific antioxidant YP_004319119.1 KEGG: phe:Phep_0874 transketolase; PFAM: transketolase, N-terminal YP_004319120.1 PFAM: transketolase-like, pyrimidine-binding domain; transketolase, C-terminal; KEGG: phe:Phep_0873 transketolase central region; SMART: transketolase-like, pyrimidine-binding domain YP_004319121.1 KEGG: phe:Phep_0872 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004319122.1 KEGG: lby:Lbys_1200 hypothetical protein YP_004319123.1 KEGG: cpi:Cpin_0186 hypothetical protein YP_004319124.1 KEGG: phe:Phep_0869 aminotransferase class-III; PFAM: Aminotransferase class-III YP_004319125.1 KEGG: phe:Phep_0867 thioredoxin; TIGRFAM: thioredoxin; PFAM: thioredoxin domain YP_004319126.1 TIGRFAM: DNA polymerase III subunit alpha; PFAM: Bacterial DNA polymerase III subunit alpha; PHP, C-terminal; exonuclease, RNase T/DNA polymerase III; Nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: phe:Phep_0866 DNA polymerase III alpha subunit; SMART: exonuclease; polymerase/histidinol phosphatase, N-terminal YP_004319127.1 KEGG: lby:Lbys_2945 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Two component regulator three Y; Two component regulator propeller; Signal transduction response regulator, receiver domain; HTH transcriptional regulator, AraC; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; Helix-turn-helix, AraC type, DNA binding domain YP_004319128.1 KEGG: lby:Lbys_2946 glycoside hydrolase 31; PFAM: glycoside hydrolase, family 31; SMART: PA14 YP_004319129.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: fjo:Fjoh_0782 TonB-dependent receptor, plug YP_004319130.1 PFAM: RagB/SusD; KEGG: fjo:Fjoh_0781 RagB/SusD domain-containing protein YP_004319131.1 KEGG: fjo:Fjoh_0780 hypothetical protein YP_004319132.1 PFAM: oxidoreductase, N-terminal; KEGG: cpi:Cpin_1979 oxidoreductase domain protein YP_004319134.1 KEGG: phe:Phep_1891 hypothetical protein YP_004319135.1 PFAM: protein of unknown function DUF490; KEGG: fjo:Fjoh_1899 hypothetical protein YP_004319136.1 PFAM: Bacterial surface antigen (D15); KEGG: fjo:Fjoh_1900 surface antigen (D15) YP_004319137.1 TIGRFAM: malate dehydrogenase, NAD-dependent; HAMAP: malate dehydrogenase, NAD-dependent; KEGG: phe:Phep_0864 malate dehydrogenase, NAD-dependent; PFAM: lactate/malate dehydrogenase, N-terminal; lactate/malate dehydrogenase, C-terminal YP_004319138.1 KEGG: phe:Phep_0863 hypothetical protein YP_004319139.1 PFAM: glycosyl transferase, group 1; KEGG: lby:Lbys_0491 glycosyl transferase group 1 YP_004319140.1 KEGG: lby:Lbys_0490 hypothetical protein YP_004319141.1 PFAM: glycosyl transferase, group 1; KEGG: lby:Lbys_0489 glycosyl transferase group 1 YP_004319142.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: scb:SCAB_19491 hypothetical protein YP_004319143.1 KEGG: nve:NEMVE_v1g86461 hypothetical protein YP_004319144.1 KEGG: zpr:ZPR_0497 hypothetical protein YP_004319145.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: fjo:Fjoh_0545 TonB-dependent receptor YP_004319146.1 KEGG: dar:Daro_4100 hypothetical protein YP_004319147.1 KEGG: cpi:Cpin_4450 protein of unknown function DUF6 transmembrane; manually curated; PFAM: Drug/metabolite transporter YP_004319148.1 KEGG: dfe:Dfer_0114 hypothetical protein YP_004319149.1 PFAM: PilT protein, N-terminal; KEGG: sli:Slin_4956 twitching mobility protein PilT YP_004319150.1 PFAM: xylose isomerase, TIM barrel domain; KEGG: phe:Phep_3140 xylose isomerase domain protein TIM barrel YP_004319151.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: cpi:Cpin_1455 aldo/keto reductase YP_004319152.1 PFAM: peptidyl-prolyl cis-trans isomerase, FKBP-type; peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; KEGG: phe:Phep_0537 peptidylprolyl isomerase FKBP-type YP_004319153.1 TIGRFAM: glycoside hydrolase, family 1, beta-glucosidase; KEGG: chu:CHU_3811 b-glucosidase; PFAM: glycoside hydrolase, family 1 YP_004319154.1 KEGG: chu:CHU_3812 glycosyltransferase-distantly-related protein YP_004319155.1 KEGG: phe:Phep_0829 protein of unknown function DUF962 YP_004319156.1 SMART: metal-dependent phosphohydrolase, HD domain; K Homology; TIGRFAM: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Uncharacterised protein family HDIG; KEGG: phe:Phep_0828 phosphodiesterase; HAMAP: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; PFAM: metal-dependent phosphohydrolase, HD subdomain; K Homology, type 1, subgroup YP_004319157.1 KEGG: phe:Phep_0827 hypothetical protein YP_004319158.1 KEGG: phe:Phep_0826 hypothetical protein YP_004319159.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: phe:Phep_0825 phenylalanyl-tRNA synthetase subunit beta; HAMAP: Phenylalanyl-tRNA synthetase, class IIc subunit beta, bacterial YP_004319160.1 KEGG: ptr:739717 hypothetical protein LOC739717 YP_004319161.1 KEGG: phe:Phep_0820 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758 YP_004319162.1 PFAM: protein of unknown function DUF1080; KEGG: sli:Slin_6435 protein of unknown function DUF1080 YP_004319163.1 TIGRFAM: ribosomal protein S20; HAMAP: ribosomal protein S20; KEGG: phe:Phep_0819 30S ribosomal protein S20; PFAM: ribosomal protein S20 YP_004319164.1 KEGG: phe:Phep_3232 hypothetical protein YP_004319165.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: phe:Phep_2526 TonB-dependent receptor YP_004319166.1 PFAM: xylose isomerase, TIM barrel domain; AP endonuclease, family 2, C-terminal; KEGG: cpi:Cpin_7279 xylose isomerase domain protein TIM barrel YP_004319167.1 PFAM: xylose isomerase, TIM barrel domain; TIGRFAM: xylose isomerase, bacterial type; HAMAP: xylose isomerase; KEGG: lby:Lbys_2943 D-xylose isomerase YP_004319168.1 KEGG: phe:Phep_1605 carbohydrate kinase FGGY; PFAM: carbohydrate kinase, FGGY, N-terminal; carbohydrate kinase, FGGY, C-terminal YP_004319169.1 KEGG: ame:408805 similar to CG7530-PA, isoform A YP_004319170.1 KEGG: cpi:Cpin_1464 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004319171.1 PFAM: Outer membrane efflux protein; KEGG: fjo:Fjoh_4293 outer membrane efflux protein YP_004319172.1 KEGG: fjo:Fjoh_4294 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004319173.1 KEGG: fjo:Fjoh_4295 CzcA family heavy metal efflux protein; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein YP_004319174.1 TIGRFAM: Divalent cation transporter; PFAM: MgtE magnesium transporter integral membrane; Magnesium transporter MgtE intracellular domain; cystathionine beta-synthase, core; KEGG: phe:Phep_1318 magnesium transporter; SMART: Magnesium transporter MgtE intracellular domain YP_004319175.1 KEGG: phe:Phep_0641 hypothetical protein YP_004319176.1 PFAM: Sulphate transporter; KEGG: phe:Phep_0642 sulfate transporter YP_004319177.1 PFAM: carbonic anhydrase; KEGG: fjo:Fjoh_4763 carbonate dehydratase; SMART: carbonic anhydrase YP_004319178.1 KEGG: cpi:Cpin_1250 protein of unknown function UPF0187 YP_004319179.1 KEGG: phe:Phep_3671 hypothetical protein YP_004319180.1 KEGG: phe:Phep_3672 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain YP_004319181.1 KEGG: dfe:Dfer_0274 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004319182.1 TIGRFAM: ribosomal protein S10 subgroup; HAMAP: ribosomal protein S10 subgroup; KEGG: phe:Phep_0598 ribosomal protein S10; PFAM: ribosomal protein S10 YP_004319183.1 TIGRFAM: translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFG/EF2, domain IV; translation elongation factor EFG/EF2, C-terminal; KEGG: phe:Phep_0597 elongation factor G; SMART: translation elongation factor EFG/EF2, domain IV; translation elongation factor EFG/EF2, C-terminal YP_004319184.1 KEGG: phe:Phep_0596 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7, bacterial-type; PFAM: ribosomal protein S7 YP_004319185.1 KEGG: phe:Phep_0595 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacteria; PFAM: ribosomal protein S12/S23 YP_004319186.1 KEGG: vfi:VF_0658 ribosomal protein S6 modification protein; TIGRFAM: S6 modification enzyme RimK; PFAM: ATP-grasp fold, RimK-type YP_004319187.1 PFAM: protein of unknown function DUF785; KEGG: abu:Abu_2189 hypothetical protein YP_004319188.1 KEGG: cpi:Cpin_6522 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase-related protein, C-terminal YP_004319189.1 KEGG: phe:Phep_2977 glutamine synthetase catalytic region; PFAM: glutamine synthetase, catalytic domain YP_004319190.1 KEGG: phe:Phep_2568 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004319191.1 KEGG: phe:Phep_2569 aminotransferase class I and II; PFAM: Aminotransferase, class I/classII YP_004319192.1 PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; KEGG: zpr:ZPR_2991 hydrogenase YP_004319193.1 PFAM: protein of unknown function DUF1080; KEGG: phe:Phep_2202 protein of unknown function DUF1080 YP_004319194.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: phe:Phep_2570 protein of unknown function DUF214 YP_004319195.1 TIGRFAM: Queuosine biosynthesis protein; HAMAP: Queuosine biosynthesis protein; KEGG: phe:Phep_2572 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein YP_004319196.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: phe:Phep_2573 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_004319197.1 KEGG: phe:Phep_2624 hypothetical protein YP_004319198.1 TIGRFAM: fructose-bisphosphate aldolase, class II, yeast/E. coli subtype; Ketose-bisphosphate aldolase, class-II; KEGG: phe:Phep_1415 fructose-bisphosphate aldolase; PFAM: Ketose-bisphosphate aldolase, class-II YP_004319199.1 PFAM: carboxyl transferase; TIGRFAM: acetyl-CoA carboxylase carboxyl transferase subunit beta; HAMAP: acetyl-CoA carboxylase carboxyl transferase subunit beta; KEGG: phe:Phep_1414 acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_004319200.1 KEGG: cci:CC1G_00031 cactin YP_004319201.1 KEGG: phe:Phep_1413 cysteine desulfurase; PFAM: Aminotransferase, class V/cysteine desulfurase YP_004319202.1 KEGG: phe:Phep_1412 phosphoglucosamine mutase; PFAM: alpha-D-phosphohexomutase, alpha/beta/alpha domain I; alpha-D-phosphohexomutase, alpha/beta/alpha domain II; alpha-D-phosphohexomutase, alpha/beta/alpha domain III; alpha-D-phosphohexomutase, C-terminal YP_004319203.1 KEGG: phe:Phep_1410 phosphoesterase PA-phosphatase related; PFAM: phosphatidic acid phosphatase type 2/haloperoxidase; SMART: phosphatidic acid phosphatase type 2/haloperoxidase YP_004319204.1 PFAM: Zinc/iron permease; KEGG: phe:Phep_1409 zinc/iron permease YP_004319205.1 KEGG: phe:Phep_1408 regulatory protein MarR; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004319206.1 KEGG: phe:Phep_1406 RNA procession exonuclease-like protein YP_004319207.1 PFAM: dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; HAMAP: dephospho-CoA kinase; KEGG: phe:Phep_1405 dephospho-CoA kinase YP_004319208.1 KEGG: phe:Phep_1404 hypothetical protein YP_004319209.1 KEGG: phe:Phep_1403 preprotein translocase, YajC subunit; TIGRFAM: Preprotein translocase YajC; PFAM: Preprotein translocase YajC YP_004319210.1 PFAM: protein of unknown function DUF1573; KEGG: phe:Phep_1402 protein of unknown function DUF1573 YP_004319211.1 TIGRFAM: NusB antitermination factor; HAMAP: NusB antitermination factor; KEGG: phe:Phep_1401 NusB/RsmB/TIM44; PFAM: NusB/RsmB/TIM44 YP_004319212.1 PFAM: glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; KEGG: phe:Phep_1400 Glu/Leu/Phe/Val dehydrogenase dimerisation region; SMART: glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal YP_004319213.1 PFAM: ABC transporter-like; ABC transporter transmembrane domain; KEGG: phe:Phep_1399 ABC transporter; SMART: ATPase, AAA+ type, core YP_004319214.1 KEGG: phe:Phep_1557 hypothetical protein YP_004319215.1 TIGRFAM: uracil-DNA glycosylase; HAMAP: uracil-DNA glycosylase; KEGG: phe:Phep_1556 uracil-DNA glycosylase; PFAM: uracil-DNA glycosylase-like YP_004319216.1 KEGG: phe:Phep_1555 regulatory protein AsnC/Lrp family; PFAM: transcription regulator AsnC-type, C-terminal; SMART: transcription regulator AsnC-type YP_004319217.1 PFAM: Fe-S metabolism associated SufE; KEGG: fjo:Fjoh_1176 Fe-S metabolism associated SufE YP_004319218.1 TIGRFAM: cysteine desulfurase, SufS; KEGG: rmr:Rmar_2025 cysteine desulfurase, SufS subfamily; PFAM: Aminotransferase, class V/cysteine desulfurase YP_004319219.1 KEGG: cpi:Cpin_3353 FeS assembly protein SufD; TIGRFAM: SUF system FeS cluster assembly, SufD; PFAM: SUF system FeS cluster assembly, SufBD YP_004319220.1 TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter-like; KEGG: chu:CHU_0977 iron-regulated ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004319221.1 KEGG: cpi:Cpin_3355 FeS assembly protein SufB; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: SUF system FeS cluster assembly, SufBD YP_004319222.1 KEGG: lby:Lbys_3332 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase domain; TIGRFAM: Orotidine 5'-phosphate decarboxylase, type 2; HAMAP: Orotidine 5'-phosphate decarboxylase, type 2; SMART: Orotidine 5'-phosphate decarboxylase domain YP_004319223.1 TIGRFAM: transcription termination factor Rho; PFAM: ATPase, alpha/subunit beta, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; KEGG: phe:Phep_3070 transcription termination factor Rho; SMART: Cold shock protein; Rho termination factor, N-terminal; ATPase, AAA+ type, core YP_004319224.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: phe:Phep_3071 CDP-alcohol phosphatidyltransferase YP_004319225.1 TIGRFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: phe:Phep_3073 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_004319226.1 KEGG: phe:Phep_3074 signal peptide peptidase SppA, 67K type; TIGRFAM: peptidase S49, protease IV; peptidase S49, SppA; PFAM: peptidase S49 YP_004319227.1 KEGG: phe:Phep_3075 PHP domain protein; PFAM: PHP, C-terminal; SMART: polymerase/histidinol phosphatase, N-terminal; DNA-directed DNA polymerase X YP_004319228.1 KEGG: phe:Phep_3076 hypothetical protein YP_004319229.1 PFAM: glycosyl transferase, family 9; KEGG: phe:Phep_3077 glycosyl transferase 9 YP_004319230.1 KEGG: phe:Phep_3078 phosphoglycerate mutase; PFAM: histidine phosphatase superfamily, clade-1; SMART: histidine phosphatase superfamily, clade-1 YP_004319231.1 PFAM: aldose 1-epimerase; KEGG: sli:Slin_4447 aldose 1-epimerase YP_004319232.1 PFAM: Mechanosensitive ion channel MscS; KEGG: amc:MADE_01983 MscS mechanosensitive ion channel ei VT8 YP_004319233.1 KEGG: phe:Phep_1441 phospholipase D/transphosphatidylase; PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase YP_004319234.1 PFAM: Uncharacterised protein family, bacteroidetes; KEGG: phe:Phep_0204 hypothetical protein YP_004319235.1 PFAM: TonB-dependent receptor, beta-barrel; KEGG: phe:Phep_0205 hypothetical protein YP_004319236.1 KEGG: phe:Phep_1889 hypothetical protein YP_004319237.1 KEGG: fba:FIC_00709 peptidyl-dipeptidase; PFAM: peptidase M3A/M3B, thimet/oligopeptidase F YP_004319238.1 KEGG: bth:BT_2974 hypothetical protein YP_004319239.1 KEGG: aba:acid345_3449 hypothetical protein YP_004319240.1 KEGG: dfe:Dfer_4954 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004319241.1 PFAM: SMP-30/gluconolaconase/LRE-like region; KEGG: sli:Slin_0076 SMP-30/gluconolaconase/LRE domain protein YP_004319242.1 KEGG: fjo:Fjoh_2198 alpha/beta hydrolase domain-containing protein YP_004319243.1 PFAM: transposase, IS4-like; KEGG: bvu:BVU_1595 transposase YP_004319244.1 KEGG: chu:CHU_1099 hypothetical protein YP_004319245.1 KEGG: dfe:Dfer_5279 hypothetical protein YP_004319246.1 KEGG: gym:GYMC10_4441 3-demethylubiquinone-9 3-methyltransferase YP_004319247.1 KEGG: tca:100142169 similar to soluble adenylyl cyclase YP_004319248.1 KEGG: zpr:ZPR_2293 two-component system sensor histidine kinase/response regulator hybrid; PFAM: Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: Signal transduction response regulator, receiver domain YP_004319249.1 KEGG: dfe:Dfer_0733 two component transcriptional regulator, LytTR family; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain YP_004319250.1 PFAM: Signal transduction histidine kinase, internal region; KEGG: dfe:Dfer_0734 signal transduction histidine kinase, LytS YP_004319251.1 KEGG: gfo:GFO_1221 hypothetical protein YP_004319252.1 KEGG: pop:POPTR_827488 diacylglycerol kinase YP_004319253.1 PFAM: protein of unknown function DUF423; KEGG: gfo:GFO_1075 hypothetical protein YP_004319254.1 KEGG: phe:Phep_2368 luciferase-like monooxygenase; TIGRFAM: Luciferase oxidoreductase, group 1; PFAM: Luciferase-like, subgroup YP_004319255.1 KEGG: fjo:Fjoh_2356 hypothetical protein YP_004319256.1 KEGG: amu:Amuc_0740 haloacid dehalogenase domain protein hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004319258.1 PFAM: lysylphosphatidylglycerol synthetase/UPF0104; KEGG: fjo:Fjoh_3190 hypothetical protein YP_004319259.1 KEGG: cpi:Cpin_2586 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004319260.1 KEGG: cpi:Cpin_2585 histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain YP_004319261.1 PFAM: Outer membrane efflux protein; KEGG: cpi:Cpin_2584 outer membrane efflux protein YP_004319262.1 PFAM: Acriflavin resistance protein; KEGG: dfe:Dfer_1160 acriflavin resistance protein YP_004319263.1 KEGG: cpi:Cpin_2582 efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004319264.1 KEGG: mlo:mlr4870 arylamine N-acetyltransferase; PFAM: N-acetyltransferase YP_004319265.1 KEGG: cpi:Cpin_4804 transcriptional regulator YP_004319266.1 KEGG: cpi:Cpin_5776 phosphoesterase PA-phosphatase related; PFAM: phosphatidic acid phosphatase type 2/haloperoxidase; SMART: phosphatidic acid phosphatase type 2/haloperoxidase YP_004319267.1 KEGG: cat:CA2559_12073 hypothetical protein YP_004319268.1 KEGG: chu:CHU_0228 hypothetical protein; PFAM: radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_004319269.1 KEGG: fjo:Fjoh_4026 OsmC family protein; TIGRFAM: peroxiredoxin, osmotically inducible protein C, subgroup; PFAM: peroxiredoxin, OsmC-like protein YP_004319270.1 KEGG: sli:Slin_1907 glycoside hydrolase clan GH-D; PFAM: glycoside hydrolase, clan GH-D YP_004319271.1 PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: lic:LIC10659 hypothetical protein YP_004319272.1 KEGG: fba:FIC_00976 hypothetical protein YP_004319273.1 KEGG: cpi:Cpin_0693 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004319274.1 KEGG: cpi:Cpin_0694 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004319275.1 PFAM: Uncharacterised protein family, bacteroidetes; KEGG: lby:Lbys_2218 hypothetical protein YP_004319276.1 KEGG: lby:Lbys_2217 TonB-dependent receptor plug YP_004319277.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: lby:Lbys_2448 peptidase M14 carboxypeptidase A YP_004319278.1 PFAM: HTH transcriptional regulator, LysR; KEGG: dfe:Dfer_1471 LysR family transcriptional regulator YP_004319279.1 SMART: polyketide synthase, beta-ketoacyl synthase domain; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; KEGG: cpi:Cpin_4968 3-oxoacyl-(acyl-carrier-protein) synthase 2; PFAM: beta-ketoacyl synthase, N-terminal; beta-ketoacyl synthase, C-terminal YP_004319280.1 PFAM: Helix-turn-helix, HxlR type; KEGG: lbf:LBF_1493 transcriptional regulator YP_004319281.1 KEGG: cpi:Cpin_0864 hypothetical protein YP_004319282.1 KEGG: cpb:Cphamn1_2133 hypothetical protein YP_004319283.1 PFAM: ABC transporter; KEGG: cpi:Cpin_2920 ABC-2 type transporter YP_004319284.1 PFAM: ABC transporter; KEGG: coc:Coch_0113 ABC-2 type transporter YP_004319285.1 PFAM: ABC transporter-like; KEGG: dfe:Dfer_5639 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004319286.1 PFAM: ABC transporter-like; KEGG: coc:Coch_0115 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004319287.1 PFAM: Biotin/lipoyl attachment; KEGG: dfe:Dfer_5637 hypothetical protein YP_004319288.1 KEGG: dfe:Dfer_5636 outer membrane efflux protein YP_004319289.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dfe:Dfer_5635 transcriptional regulator, TetR family YP_004319290.1 PFAM: IstB-like ATP-binding protein; KEGG: zpr:ZPR_1312 probable insertion sequence ATP-binding protein, IS21 family YP_004319291.1 PFAM: Integrase, catalytic core; KEGG: zpr:ZPR_1311 transposase, IS21 family protein YP_004319292.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: fps:FP2208 biopolymer transport ExbD protein YP_004319293.1 PFAM: Cold-shock protein, DNA-binding; KEGG: hdu:HD1366 cold shock-like protein CspD YP_004319294.1 KEGG: lby:Lbys_3499 restriction endonuclease YP_004319295.1 KEGG: phe:Phep_1743 hypothetical protein YP_004319296.1 KEGG: phe:Phep_1743 hypothetical protein YP_004319297.1 KEGG: phe:Phep_3346 secretion protein HlyD family protein YP_004319298.1 PFAM: ABC transporter-like; peptidase C39, bacteriocin processing; ABC transporter transmembrane domain; KEGG: phe:Phep_3347 ABC-type bacteriocin transporter; SMART: ATPase, AAA+ type, core YP_004319299.1 PFAM: acyltransferase 3; KEGG: fps:FP0761 acyltransferase YP_004319300.1 KEGG: lby:Lbys_2600 patatin; manually curated; PFAM: patatin/phospholipase A2-related YP_004319301.1 KEGG: sli:Slin_1312 hypothetical protein YP_004319302.1 KEGG: pwa:Pecwa_0956 ATPase YP_004319303.1 KEGG: phe:Phep_0034 protein of unknown function DUF74; HAMAP: Uncharacterised protein family UPF0145; PFAM: Uncharacterised protein family UPF0145 YP_004319304.1 KEGG: tet:TTHERM_01000170 Viral A-type inclusion protein repeat containing protein YP_004319306.1 KEGG: cqu:CpipJ_CPIJ001618 protofilament ribbon protein YP_004319307.1 KEGG: phe:Phep_2457 hypothetical protein YP_004319308.1 HAMAP: endonuclease V; KEGG: dfe:Dfer_3087 deoxyribonuclease V; PFAM: endonuclease V YP_004319309.1 PFAM: protein of unknown function DUF763; KEGG: cpi:Cpin_4063 protein of unknown function DUF763 YP_004319310.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: phe:Phep_2367 glyoxalase/bleomycin resistance protein/dioxygenase YP_004319311.1 KEGG: phe:Phep_2125 glucose/galactose transporter; TIGRFAM: Bacterial glucose/galactose transporter; PFAM: Major facilitator superfamily MFS-1 YP_004319312.1 TIGRFAM: Conserved hypothetical protein CHP01212; PFAM: radical SAM; KEGG: phe:Phep_1005 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB YP_004319313.1 KEGG: phe:Phep_4186 hypothetical protein YP_004319314.1 KEGG: sli:Slin_5684 epimerase YP_004319315.1 KEGG: phe:Phep_1163 acyl-(acyl-carrier-protein) desaturase; PFAM: Fatty acid desaturase, type 2 YP_004319316.1 PFAM: PepSY-associated TM helix; KEGG: cpi:Cpin_7063 uncharacterized iron-regulated membrane protein YP_004319317.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: dfe:Dfer_2786 N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_004319318.1 PFAM: N-formylglutamate amidohydrolase; KEGG: cpb:Cphamn1_0662 hypothetical protein YP_004319319.1 PFAM: protein of unknown function DUF1704; KEGG: paa:Paes_0605 protein of unknown function DUF1704 YP_004319320.1 KEGG: cpb:Cphamn1_0666 glutathione synthetase; PFAM: Prokaryotic glutathione synthetase, ATP-binding YP_004319321.1 PFAM: oxidoreductase, FAD-binding domain; oxidoreductase FAD/NAD(P)-binding; ferredoxin; KEGG: dfe:Dfer_4880 ferredoxin YP_004319322.1 KEGG: shw:Sputw3181_1130 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_004319323.1 KEGG: dfe:Dfer_1114 hypothetical protein YP_004319324.1 KEGG: cpi:Cpin_2388 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; Tetratricopeptide TPR-1; SMART: ATPase-like, ATP-binding domain; Tetratricopeptide repeat YP_004319325.1 KEGG: cpi:Cpin_2387 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004319326.1 TIGRFAM: Penicillin-binding protein 1C; KEGG: fjo:Fjoh_1530 penicillin-binding protein 1C; PFAM: glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; Penicillin-binding, C-terminal YP_004319327.1 PFAM: alpha-2-macroglobulin, N-terminal; alpha-2-macroglobulin, N-terminal 2; KEGG: fjo:Fjoh_1529 alpha-2-macroglobulin domain-containing protein YP_004319328.1 PFAM: Uncharacterised protein family YphA; KEGG: sli:Slin_2336 DoxX family protein YP_004319329.1 TIGRFAM: cysteine synthase B; cysteine synthase K/M; KEGG: phe:Phep_2362 cysteine synthase B; PFAM: pyridoxal phosphate-dependent enzyme, subunit beta YP_004319330.1 KEGG: phe:Phep_2363 serine O-acetyltransferase YP_004319331.1 KEGG: phe:Phep_1461 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase N-terminal YP_004319332.1 KEGG: phe:Phep_1460 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004319333.1 KEGG: phe:Phep_3163 hypothetical protein YP_004319334.1 PFAM: tRNA--hydroxylase; KEGG: fjo:Fjoh_1549 tRNA--hydroxylase YP_004319336.1 manually curated; KEGG: coc:Coch_0565 hypothetical protein YP_004319337.1 TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; HAMAP: tRNA modification GTPase TrmE; KEGG: chu:CHU_2030 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related YP_004319338.1 PFAM: protein of unknown function DUF1905; KEGG: phe:Phep_2906 hypothetical protein YP_004319339.1 KEGG: phe:Phep_0663 efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004319340.1 PFAM: Outer membrane efflux protein; KEGG: phe:Phep_0662 outer membrane efflux protein YP_004319341.1 PFAM: polysaccharide deacetylase; KEGG: phe:Phep_0661 polysaccharide deacetylase YP_004319342.1 KEGG: phe:Phep_2552 hypothetical protein YP_004319343.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: phe:Phep_2553 TonB-dependent receptor plug YP_004319344.1 PFAM: protein of unknown function DUF2219; KEGG: phe:Phep_1192 hypothetical protein YP_004319345.1 PFAM: protein of unknown function DUF1080; KEGG: cpi:Cpin_7277 protein of unknown function DUF1080 YP_004319346.1 TIGRFAM: methylisocitrate lyase; KEGG: psp:PSPPH_2056 2-methylisocitrate lyase; PFAM: isocitrate lyase/phosphorylmutase YP_004319347.1 TIGRFAM: 2-methylcitrate synthase/citrate synthase type I; KEGG: bvi:Bcep1808_3679 methylcitrate synthase; PFAM: citrate synthase-like YP_004319348.1 TIGRFAM: 2-methylcitrate dehydratase PrpD; KEGG: bgf:BC1003_4612 2-methylcitrate dehydratase; PFAM: MmgE/PrpD YP_004319349.1 KEGG: phe:Phep_0003 hypothetical protein YP_004319350.1 KEGG: fba:FIC_00796 hypothetical protein YP_004319352.1 KEGG: tet:TTHERM_00046070 hypothetical protein YP_004319354.1 KEGG: phe:Phep_3868 sugar transporter; TIGRFAM: Sugar/inositol transporter; PFAM: general substrate transporter YP_004319355.1 PFAM: Tetratricopeptide TPR-1; KEGG: phe:Phep_3867 TPR repeat-containing protein YP_004319356.1 KEGG: cpi:Cpin_3596 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319357.1 SMART: polyketide synthase, enoylreductase; TIGRFAM: alcohol dehydrogenase, zinc-binding type 1; KEGG: fjo:Fjoh_3309 alcohol dehydrogenase; PFAM: alcohol dehydrogenase, C-terminal; alcohol dehydrogenase GroES-like YP_004319358.1 KEGG: sli:Slin_4136 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319359.1 KEGG: phe:Phep_0813 alpha-L-fucosidase YP_004319360.1 KEGG: msu:MS0865 potassium efflux protein KefA YP_004319361.1 KEGG: cyj:Cyan7822_0872 hypothetical protein YP_004319362.1 KEGG: aca:ACP_1056 YihY family protein YP_004319363.1 PFAM: xylose isomerase, TIM barrel domain; KEGG: rbi:RB2501_10687 sugar phosphate isomerase/epimerase YP_004319364.1 KEGG: zpr:ZPR_1028 glycosyl hydrolase; PFAM: glycoside hydrolase, family 43; carbohydrate binding domain, family 6; SMART: cellulose binding, type IV YP_004319366.1 KEGG: dfe:Dfer_1418 2-nitropropane dioxygenase NPD; PFAM: 2-nitropropane dioxygenase, NPD YP_004319367.1 KEGG: cpi:Cpin_5404 transcriptional regulator, Crp/Fnr family YP_004319368.1 PFAM: Helix-turn-helix, HxlR type; KEGG: zpr:ZPR_1979 hypothetical protein YP_004319369.1 KEGG: zpr:ZPR_2647 probable acyl-carrier phosphodiesterase YP_004319371.1 KEGG: sli:Slin_6979 IstB domain protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004319372.1 PFAM: Integrase, catalytic core; Resolvase, helix-turn-helix domain; KEGG: sli:Slin_6980 integrase catalytic region YP_004319373.1 KEGG: ttm:Tthe_0184 protein of unknown function DUF1648 YP_004319375.1 KEGG: rbi:RB2501_06145 hypothetical protein YP_004319376.1 KEGG: phe:Phep_1756 hypothetical protein YP_004319377.1 KEGG: phe:Phep_1744 hypothetical protein YP_004319378.1 KEGG: pcb:PC000156.00.0 hypothetical protein YP_004319379.1 KEGG: chu:CHU_2376 hypothetical protein YP_004319380.1 KEGG: zpr:ZPR_3907 RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2 YP_004319381.1 KEGG: chu:CHU_3096 hypothetical protein YP_004319382.1 KEGG: nve:NEMVE_v1g109335 hypothetical protein YP_004319383.1 PFAM: Uncharacterised protein family YphA; KEGG: cpi:Cpin_3022 DoxX family protein YP_004319384.1 PFAM: alpha/beta hydrolase fold-1; KEGG: fjo:Fjoh_0592 alpha/beta hydrolase fold YP_004319385.1 KEGG: pyo:PY03927 hypothetical protein YP_004319386.1 KEGG: cpi:Cpin_4702 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004319387.1 KEGG: cpi:Cpin_4701 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319389.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: fjo:Fjoh_3847 short-chain dehydrogenase/reductase SDR; SMART: polyketide synthase/Fatty acid synthase, KR YP_004319390.1 PFAM: Helix-turn-helix, HxlR type; KEGG: cpi:Cpin_2067 HxlR family transcriptional regulator YP_004319391.1 KEGG: cpi:Cpin_4244 NmrA family protein YP_004319392.1 PFAM: Helix-turn-helix, HxlR type; KEGG: cpi:Cpin_4243 HxlR family transcriptional regulator YP_004319394.1 PFAM: NIPSNAP; KEGG: sli:Slin_0535 NIPSNAP family containing protein YP_004319396.1 PFAM: Helix-turn-helix, HxlR type; KEGG: cpi:Cpin_2811 HxlR family transcriptional regulator YP_004319397.1 PFAM: alcohol dehydrogenase, C-terminal; alcohol dehydrogenase GroES-like; KEGG: dfe:Dfer_2330 alcohol dehydrogenase zinc-binding domain protein; SMART: polyketide synthase, enoylreductase YP_004319398.1 KEGG: phe:Phep_3276 flavin reductase domain protein FMN-binding; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding YP_004319399.1 PFAM: Cyclic nucleotide-binding domain; KEGG: fjo:Fjoh_0475 cyclic nucleotide-binding protein YP_004319400.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: fjo:Fjoh_1309 short-chain dehydrogenase/reductase SDR YP_004319401.1 PFAM: Monooxygenase, FAD-binding; KEGG: cpi:Cpin_2957 monooxygenase FAD-binding YP_004319402.1 KEGG: sli:Slin_0938 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319403.1 KEGG: dfe:Dfer_3749 hypothetical protein YP_004319404.1 KEGG: lby:Lbys_0085 signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain YP_004319405.1 KEGG: lby:Lbys_0084 two component transcriptional regulator, LuxR family; PFAM: transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: transcription regulator LuxR, C-terminal YP_004319406.1 KEGG: lbl:LBL_2824 sensor histidine kinase of a two component response regulator; PFAM: ATPase-like, ATP-binding domain; cystathionine beta-synthase, core; SMART: ATPase-like, ATP-binding domain; cystathionine beta-synthase, core YP_004319407.1 KEGG: phe:Phep_1387 hypothetical protein YP_004319408.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: kfl:Kfla_3400 GCN5-related N-acetyltransferase YP_004319410.1 PFAM: Cyclic nucleotide-binding domain; KEGG: fjo:Fjoh_4064 cyclic nucleotide-binding protein YP_004319411.1 KEGG: dia:Dtpsy_0661 porin gram-negative type YP_004319412.1 KEGG: bcj:BCAS0499 exported monooxygenase YP_004319413.1 PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: lby:Lbys_0789 bifunctional deaminase-reductase domain protein YP_004319414.1 KEGG: psl:Psta_4390 sulfatase; PFAM: Sulfatase YP_004319416.1 PFAM: Cyclic nucleotide-binding domain; KEGG: fjo:Fjoh_3193 cyclic nucleotide-binding protein YP_004319417.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sli:Slin_0359 NAD-dependent epimerase/dehydratase YP_004319418.1 KEGG: cyj:Cyan7822_6599 rifampin ADP-ribosyl transferase YP_004319419.1 KEGG: lby:Lbys_0294 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain YP_004319420.1 PFAM: Signal transduction histidine kinase, internal region; KEGG: fjo:Fjoh_3969 signal transduction histidine kinase, LytS YP_004319421.1 PFAM: hypothetical protein; KEGG: sus:acid_7367 abortive infection protein YP_004319422.1 KEGG: lby:Lbys_0772 hypothetical protein YP_004319423.1 PFAM: Cyclic nucleotide-binding domain; KEGG: cpi:Cpin_5404 Crp/Fnr family transcriptional regulator YP_004319424.1 PFAM: endoribonuclease L-PSP; KEGG: dfe:Dfer_1772 endoribonuclease L-PSP YP_004319425.1 PFAM: Flavodoxin-like fold; KEGG: lby:Lbys_0773 nad(p)h dehydrogenase (quinone) YP_004319426.1 PFAM: Cyclic nucleotide-binding domain; KEGG: lby:Lbys_0774 transcriptional regulator, crp/fnr family YP_004319427.1 KEGG: fjo:Fjoh_3804 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004319428.1 PFAM: FecR protein; KEGG: phe:Phep_1363 FecR protein YP_004319429.1 PFAM: TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_4736 TonB-dependent receptor plug YP_004319430.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_0301 RagB/SusD domain protein YP_004319431.1 KEGG: fjo:Fjoh_3395 hypothetical protein; TIGRFAM: RarD protein; PFAM: Drug/metabolite transporter YP_004319432.1 KEGG: tet:TTHERM_00442760 MIF4G domain containing protein YP_004319433.1 KEGG: phe:Phep_3047 sulfatase; PFAM: Sulfatase YP_004319434.1 KEGG: fbc:FB2170_06630 hypothetical protein YP_004319435.1 KEGG: fbc:FB2170_06620 hypothetical protein; TIGRFAM: alpha-1,2-mannosidase, PFAM: glycosyl hydrolase 92 YP_004319436.1 KEGG: fbc:FB2170_06615 ROK family member transcriptional repressor YP_004319437.1 PFAM: RagB/SusD; KEGG: pdi:BDI_1623 hypothetical protein YP_004319438.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: pdi:BDI_1624 hypothetical protein YP_004319439.1 KEGG: cpi:Cpin_2423 sugar transporter; TIGRFAM: Sugar/inositol transporter; PFAM: general substrate transporter YP_004319440.1 KEGG: phe:Phep_0753 UbiC transcription regulator-associated domain protein; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR YP_004319441.1 KEGG: zpr:ZPR_4384 glycosyl hydrolase 92; TIGRFAM: alpha-1,2-mannosidase, PFAM: glycosyl hydrolase 92 YP_004319442.1 PFAM: RagB/SusD; KEGG: cpi:Cpin_5507 RagB/SusD domain protein YP_004319443.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: cpi:Cpin_5508 TonB-dependent receptor plug YP_004319444.1 TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: cat:CA2559_00260 copper transport-related membrane protein; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase YP_004319446.1 KEGG: cpi:Cpin_3617 hypothetical protein YP_004319447.1 PFAM: ATPase, K+ transporting, subunit alpha; TIGRFAM: ATPase, K+ transporting, subunit alpha; HAMAP: ATPase, K+ transporting, subunit alpha; KEGG: fba:FIC_01125 potassium-transporting ATPase A YP_004319448.1 PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; HAMAP: Potassium-transporting ATPase, B chain; KEGG: chu:CHU_1983 potassium-transporting ATPase, subunit B YP_004319449.1 PFAM: Potassium transporting ATPase, C subunit; TIGRFAM: Potassium transporting ATPase, C subunit; HAMAP: Potassium transporting ATPase, C subunit; KEGG: fba:FIC_01123 potassium-transporting ATPase C YP_004319450.1 KEGG: fba:FIC_01122 hypothetical protein YP_004319451.1 PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; UspA; KEGG: chu:CHU_1986 sensor kinase for the kdp operon YP_004319452.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; PAS fold; KEGG: fba:FIC_01120 two-component sensor histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; PAS YP_004319453.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: sfu:Sfum_3431 short-chain dehydrogenase/reductase SDR YP_004319454.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: bvu:BVU_0745 hypothetical protein YP_004319455.1 PFAM: RagB/SusD; KEGG: bvu:BVU_0744 hypothetical protein YP_004319456.1 KEGG: dfe:Dfer_1855 carbohydrate binding family 6 YP_004319457.1 KEGG: cpi:Cpin_5644 regulatory protein GntR HTH; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004319458.1 PFAM: Sodium/solute symporter; KEGG: cpi:Cpin_5643 symporter YidK YP_004319459.1 KEGG: cpi:Cpin_5515 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319460.1 PFAM: protein of unknown function DUF486; KEGG: dfe:Dfer_2981 protein of unknown function DUF486 YP_004319461.1 KEGG: dfe:Dfer_0373 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core YP_004319463.1 KEGG: bmy:Bm1_31550 Tryparedoxin YP_004319464.1 KEGG: fbc:FB2170_10279 adenylate cyclase-related protein YP_004319465.1 TIGRFAM: methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Ada DNA repair, metal-binding; methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; KEGG: fba:FIC_01039 methylated-DNA--protein-cysteine methyltransferase; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319466.1 KEGG: cpi:Cpin_0753 DNA/RNA helicase YP_004319467.1 TIGRFAM: peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: zpr:ZPR_0144 YflG; PFAM: peptidase M24, structural domain YP_004319468.1 TIGRFAM: ribose/galactose isomerase; KEGG: zpr:ZPR_2640 RpiB/LacA/LacB family sugar-phosphate isomerase; PFAM: ribose/galactose isomerase YP_004319469.1 TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; KEGG: zpr:ZPR_2641 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase, C-terminal; 6-phosphogluconate dehydrogenase, NAD-binding YP_004319470.1 TIGRFAM: glucose-6-phosphate dehydrogenase; KEGG: zpr:ZPR_2642 glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase, C-terminal; glucose-6-phosphate dehydrogenase, NAD-binding YP_004319471.1 TIGRFAM: 6-phosphogluconolactonase, DevB-type; KEGG: fjo:Fjoh_4801 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase YP_004319472.1 KEGG: dma:DMR_41750 nuclease; PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like) YP_004319473.1 KEGG: sli:Slin_3510 hypothetical protein YP_004319474.1 KEGG: sli:Slin_5426 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; ferredoxin YP_004319475.1 KEGG: gme:Gmet_3489 twin-arginine translocation pathway signal; PFAM: aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding YP_004319476.1 KEGG: cpi:Cpin_5739 alpha-L-arabinofuranosidase domain protein; PFAM: alpha-L-arabinofuranosidase, C-terminal; carbohydrate-binding, CenC-like; SMART: alpha-L-arabinofuranosidase, C-terminal YP_004319477.1 PFAM: protein of unknown function DUF1680; KEGG: bvu:BVU_0490 hypothetical protein YP_004319479.1 KEGG: cpi:Cpin_4857 sialate O-acetylesterase; PFAM: Domain of unknown function DUF303, acetylesterase YP_004319480.1 KEGG: cpi:Cpin_7188 sugar transporter; TIGRFAM: Sugar/inositol transporter; PFAM: general substrate transporter YP_004319481.1 PFAM: ROK; KEGG: phe:Phep_1042 ROK family protein YP_004319482.1 KEGG: cpi:Cpin_2136 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain YP_004319483.1 PFAM: RagB/SusD; KEGG: cpi:Cpin_7233 RagB/SusD domain protein YP_004319484.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: cpi:Cpin_7234 TonB-dependent receptor plug YP_004319485.1 PFAM: FecR protein; KEGG: dfe:Dfer_1624 anti-FecI sigma factor, FecR YP_004319486.1 KEGG: phe:Phep_1502 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004319487.1 KEGG: cpi:Cpin_7180 neuraminidase YP_004319488.1 KEGG: sli:Slin_3660 hypothetical protein YP_004319489.1 TIGRFAM: Divalent cation transporter; PFAM: MgtE magnesium transporter integral membrane; Magnesium transporter MgtE intracellular domain; cystathionine beta-synthase, core; KEGG: fba:FIC_00471 divalent cation transporter; SMART: Magnesium transporter MgtE intracellular domain; cystathionine beta-synthase, core YP_004319490.1 KEGG: phe:Phep_0814 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal YP_004319491.1 PFAM: cytochrome C, class I; KEGG: fbc:FB2170_06945 mulitcopper oxidase domain protein YP_004319492.1 PFAM: Copper chaperone SCO1/SenC; KEGG: dfe:Dfer_5562 electron transporter SCO1/SenC YP_004319493.1 KEGG: lby:Lbys_3244 hypothetical protein YP_004319494.1 KEGG: dfe:Dfer_2240 hypothetical protein YP_004319495.1 KEGG: sli:Slin_4535 hypothetical protein YP_004319496.1 PFAM: ricin B lectin; KEGG: cpi:Cpin_4828 ricin B lectin YP_004319497.1 KEGG: cpi:Cpin_4820 alpha-1,2-mannosidase; TIGRFAM: alpha-1,2-mannosidase, PFAM: glycosyl hydrolase 92 YP_004319498.1 PFAM: Lipase, GDSL; KEGG: cpi:Cpin_4821 lipolytic protein G-D-S-L family YP_004319499.1 PFAM: glycosyl hydrolases 38, C-terminal; glycoside hydrolase, family 38, central domain; glycoside hydrolase, family 38, core; KEGG: pdi:BDI_0244 glycoside hydrolase YP_004319500.1 PFAM: RagB/SusD; KEGG: cpi:Cpin_4823 RagB/SusD domain protein YP_004319501.1 KEGG: cpi:Cpin_4824 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; Secretin/TonB, short N-terminal; SMART: Secretin/TonB, short N-terminal YP_004319502.1 PFAM: FecR protein; KEGG: phe:Phep_1382 FecR protein YP_004319503.1 KEGG: dfe:Dfer_1586 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004319504.1 PFAM: protein of unknown function DUF202; KEGG: cpi:Cpin_6983 protein of unknown function DUF202 YP_004319505.1 KEGG: phe:Phep_2630 hypothetical protein YP_004319506.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: sli:Slin_4598 protein of unknown function DUF214 YP_004319507.1 KEGG: zpr:ZPR_4386 heparan N-sulfatase; PFAM: Sulfatase YP_004319508.1 KEGG: zpr:ZPR_2647 probable acyl-carrier phosphodiesterase; HAMAP: NADH-azoreductase, FMN-dependent; PFAM: Flavodoxin-like fold YP_004319509.1 PFAM: YCII-related; KEGG: dfe:Dfer_0567 YCII-related protein YP_004319510.1 manually curated; TIGRFAM: RNA polymerase sigma-70; KEGG: chu:CHU_2476 ECF subfamily RNA polymerase sigma-70 factor; PFAM: RNA polymerase sigma-70 region 2 YP_004319511.1 PFAM: Sulfatase; KEGG: sli:Slin_1432 sulfatase YP_004319512.1 KEGG: chu:CHU_3778 hypothetical protein YP_004319513.1 PFAM: Drug/metabolite transporter; KEGG: fjo:Fjoh_4038 hypothetical protein YP_004319514.1 PFAM: Flavodoxin-like fold; KEGG: zpr:ZPR_3710 NAD(P)H dehydrogenase (quinone) YP_004319515.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: vfm:VFMJ11_2491 transcriptional regulator, TetR family YP_004319516.1 PFAM: carboxylesterase, type B; KEGG: krh:KRH_07910 carboxylesterase YP_004319517.1 KEGG: ptm:GSPATT00026344001 hypothetical protein YP_004319518.1 KEGG: ptm:GSPATT00031879001 hypothetical protein YP_004319519.1 KEGG: chu:CHU_3778 hypothetical protein YP_004319520.1 KEGG: dfe:Dfer_4195 hypothetical protein YP_004319521.1 PFAM: glucose-inhibited division protein A-related; KEGG: dfe:Dfer_2605 pyridine nucleotide-disulphide oxidoreductase YP_004319522.1 KEGG: dfe:Dfer_2604 hypothetical protein YP_004319523.1 KEGG: sli:Slin_4316 hypothetical protein YP_004319524.1 PFAM: RagB/SusD; KEGG: bth:BT_2460 hypothetical protein YP_004319525.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: bth:BT_2461 hypothetical protein YP_004319526.1 PFAM: FecR protein; KEGG: phe:Phep_1501 FecR protein YP_004319527.1 KEGG: phe:Phep_1502 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004319528.1 KEGG: cpi:Cpin_6781 peptidase S41; PFAM: peptidase S41; SMART: peptidase S41 YP_004319529.1 PFAM: endoribonuclease L-PSP; KEGG: cti:RALTA_B2245 hypothetical protein YP_004319530.1 PFAM: Cyclic nucleotide-binding domain; KEGG: dfe:Dfer_1290 Crp/Fnr family transcriptional regulator YP_004319531.1 KEGG: cpi:Cpin_2093 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319532.1 KEGG: cpi:Cpin_5615 NmrA family protein YP_004319533.1 PFAM: Major facilitator superfamily MFS-1; KEGG: fjo:Fjoh_0591 major facilitator transporter YP_004319534.1 KEGG: zpr:ZPR_1500 AraC family transcriptional regulator protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319535.1 PFAM: oxidoreductase, FAD-binding domain; KEGG: fjo:Fjoh_4029 oxidoreductase FAD-binding subunit YP_004319536.1 KEGG: fjo:Fjoh_2550 hypothetical protein YP_004319537.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bgl:bglu_2g21550 LysR family transcriptional regulator protein YP_004319538.1 PFAM: alpha/beta hydrolase fold-1; KEGG: bph:Bphy_6462 alpha/beta hydrolase fold protein YP_004319539.1 PFAM: protein of unknown function DUF1348; KEGG: sli:Slin_6224 protein of unknown function DUF1348 YP_004319540.1 KEGG: cpi:Cpin_4323 hypothetical protein YP_004319541.1 PFAM: protein of unknown function DUF2147; KEGG: cpi:Cpin_4322 signal peptide protein YP_004319542.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: pst:PSPTO_1582 oxidoreductase, short-chain dehydrogenase/reductase YP_004319543.1 KEGG: phu:Phum_PHUM296360 hypothetical protein YP_004319544.1 KEGG: cbf:CLI_2873 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004319545.1 PFAM: ABC transporter-like; KEGG: cpi:Cpin_3040 ABC transporter related YP_004319546.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: sli:Slin_4594 protein of unknown function DUF214 YP_004319547.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sit:TM1040_1863 glyoxalase/bleomycin resistance protein/dioxygenase YP_004319548.1 KEGG: zpr:ZPR_3965 membrane protein YP_004319549.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: sli:Slin_0927 protein of unknown function DUF214 YP_004319550.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cpi:Cpin_4302 transcriptional regulator, TetR family YP_004319551.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: cpi:Cpin_4301 short-chain dehydrogenase/reductase SDR; SMART: polyketide synthase/Fatty acid synthase, KR YP_004319552.1 KEGG: mac:MA0991 hypothetical protein YP_004319553.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bid:Bind_1470 short chain dehydrogenase YP_004319554.1 PFAM: Domain of unknown function DUF336; KEGG: cpi:Cpin_4361 protein of unknown function DUF336 YP_004319555.1 KEGG: cpi:Cpin_1694 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319556.1 KEGG: fjo:Fjoh_0476 hypothetical protein YP_004319557.1 PFAM: methyladenine glycosylase; KEGG: cpi:Cpin_3455 methyladenine glycosylase YP_004319558.1 KEGG: mmi:MMAR_0323 dioxygenase subunit beta YP_004319559.1 PFAM: saccharopine dehydrogenase / Homospermidine synthase; KEGG: ebi:EbC_21480 saccharopine dehydrogenase YP_004319560.1 KEGG: cpi:Cpin_4318 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004319561.1 KEGG: cpi:Cpin_4238 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004319562.1 PFAM: protein of unknown function DUF2174, N-terminal; KEGG: zpr:ZPR_3324 hypothetical protein YP_004319563.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: zpr:ZPR_3325 TetR family transcriptional regulator protein YP_004319564.1 KEGG: fjo:Fjoh_0477 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319565.1 KEGG: fjo:Fjoh_0479 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004319566.1 PFAM: Signal transduction histidine kinase, internal region; KEGG: dfe:Dfer_0799 signal transduction histidine kinase, LytS YP_004319567.1 KEGG: dfe:Dfer_0800 two component transcriptional regulator, LytTR family; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain YP_004319568.1 KEGG: bfs:BF2968 hypothetical protein YP_004319569.1 KEGG: dfe:Dfer_0801 hypothetical protein YP_004319570.1 PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: dfe:Dfer_0861 lipid A biosynthesis acyltransferase YP_004319571.1 KEGG: smm:Smp_043270 biogenic amine receptor YP_004319572.1 KEGG: cat:CA2559_12183 hypothetical protein YP_004319573.1 PFAM: nitroreductase-like; KEGG: sli:Slin_2079 nitroreductase YP_004319574.1 PFAM: Helix-turn-helix, HxlR type; KEGG: cpi:Cpin_4283 HxlR family transcriptional regulator YP_004319575.1 KEGG: ana:all2422 hypothetical protein YP_004319577.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: cpi:Cpin_2894 short-chain dehydrogenase/reductase SDR YP_004319578.1 PFAM: Cyclic nucleotide-binding domain; KEGG: fjo:Fjoh_0475 cyclic nucleotide-binding protein YP_004319579.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: zpr:ZPR_4633 ABC transporter permease YP_004319580.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: eca:ECA1979 short chain dehydrogenase YP_004319581.1 KEGG: cts:Ctha_0791 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319582.1 KEGG: phe:Phep_3957 hypothetical protein YP_004319583.1 TIGRFAM: protein of unknown function DUF132; PFAM: PilT protein, N-terminal; KEGG: cyh:Cyan8802_2280 nucleotide binding protein PINc; SMART: nucleotide binding protein, PINc YP_004319584.1 PFAM: protein of unknown function DUF187; KEGG: dfe:Dfer_5721 protein of unknown function DUF187 YP_004319585.1 PFAM: beta-lactamase-like; KEGG: cbh:CLC_0481 metallo-beta-lactamase YP_004319586.1 KEGG: sai:Saci_0679 hypothetical protein YP_004319587.1 KEGG: fri:FraEuI1c_6554 hypothetical protein; PFAM: F-box associated (FBA) domain; SMART: Hedgehog/intein hint, N-terminal YP_004319588.1 KEGG: cts:Ctha_0791 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319589.1 KEGG: fjo:Fjoh_1840 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004319590.1 KEGG: atu:Atu0859 hypothetical protein YP_004319591.1 PFAM: Cyclic nucleotide-binding domain; KEGG: cpi:Cpin_5649 Crp/Fnr family transcriptional regulator YP_004319592.1 KEGG: cpi:Cpin_5650 hypothetical protein YP_004319593.1 KEGG: asu:Asuc_2090 hypothetical protein YP_004319594.1 KEGG: pdi:BDI_3642 hypothetical protein YP_004319595.1 PFAM: PilT protein, N-terminal; KEGG: pdi:BDI_3643 DNA binding protein YP_004319596.1 KEGG: cpi:Cpin_1070 DNA mismatch repair protein MutS domain protein; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core YP_004319597.1 KEGG: fjo:Fjoh_0075 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004319598.1 KEGG: pph:Ppha_0263 hypothetical protein YP_004319600.1 KEGG: cpi:Cpin_4082 hypothetical protein YP_004319601.1 PFAM: transposase, IS4-like; KEGG: amr:AM1_5147 IS4 family transposase YP_004319602.1 KEGG: phe:Phep_1381 RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2 YP_004319603.1 PFAM: FecR protein; KEGG: phe:Phep_0327 FecR protein YP_004319604.1 KEGG: dfe:Dfer_1584 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SMART: Secretin/TonB, short N-terminal YP_004319605.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_1583 RagB/SusD domain protein YP_004319606.1 KEGG: rba:RB940 hypothetical protein YP_004319607.1 KEGG: sli:Slin_4693 L-lactate transport; TIGRFAM: L-lactate permease; PFAM: L-lactate permease YP_004319608.1 PFAM: glycosyl hydrolase, family 88; KEGG: cpi:Cpin_6823 glycosyl hydrolase 88 YP_004319609.1 KEGG: mvn:Mevan_1097 translation factor pelota YP_004319610.1 KEGG: sli:Slin_6979 IstB domain protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004319611.1 PFAM: Integrase, catalytic core; Resolvase, helix-turn-helix domain; KEGG: sli:Slin_6980 integrase catalytic region YP_004319612.1 KEGG: sli:Slin_2806 plasmid-related protein YP_004319613.1 PFAM: Alkyl hydroperoxide reductase subunit C/ thiol specific antioxidant; KEGG: sli:Slin_0780 redoxin domain protein YP_004319614.1 KEGG: cpi:Cpin_5635 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319615.1 KEGG: pfl:PFL_1290 short chain dehydrogenase YP_004319616.1 KEGG: bvi:Bcep1808_4925 hypothetical protein YP_004319618.1 KEGG: ppp:PHYPADRAFT_104320 hypothetical protein YP_004319619.1 KEGG: cpi:Cpin_3481 transcriptional regulator, HxlR family YP_004319620.1 KEGG: fjo:Fjoh_4477 hypothetical protein YP_004319621.1 KEGG: fjo:Fjoh_4476 hypothetical protein YP_004319622.1 PFAM: Cyclic nucleotide-binding domain; KEGG: fjo:Fjoh_3827 cyclic nucleotide-binding protein YP_004319623.1 PFAM: ABC transporter-like; KEGG: cwo:Cwoe_2373 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004319624.1 PFAM: ABC transporter-like; ABC transporter transmembrane domain; KEGG: cwo:Cwoe_2372 ABC transporter protein; SMART: ATPase, AAA+ type, core YP_004319625.1 KEGG: cpi:Cpin_7195 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319626.1 KEGG: phe:Phep_1666 hypothetical protein YP_004319627.1 KEGG: bcy:Bcer98_3375 hypothetical protein YP_004319628.1 KEGG: pcs:Pc12g16150 Pc12g16150 YP_004319629.1 PFAM: DinB; KEGG: cpi:Cpin_2474 DinB family protein YP_004319630.1 KEGG: cpi:Cpin_6783 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319631.1 KEGG: cpi:Cpin_6046 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319632.1 PFAM: Cupin 2, conserved barrel; KEGG: tcx:Tcr_1225 anti-sigm factor, ChrR YP_004319633.1 PFAM: protein of unknown function DUF2306, membrane; KEGG: fbc:FB2170_02285 hypothetical protein YP_004319634.1 KEGG: dae:Dtox_2189 hypothetical protein YP_004319635.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: zpr:ZPR_3304 glyoxalase/bleomycin resistance protein YP_004319636.1 KEGG: cpi:Cpin_5664 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319637.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: cpi:Cpin_5665 short-chain dehydrogenase/reductase SDR YP_004319638.1 PFAM: glycoside hydrolase, family 2, carbohydrate-binding; glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; KEGG: cpi:Cpin_3794 glycoside hydrolase 2 sugar binding YP_004319639.1 PFAM: NIPSNAP; KEGG: sli:Slin_0535 NIPSNAP family containing protein YP_004319640.1 KEGG: fjo:Fjoh_3850 hypothetical protein YP_004319641.1 KEGG: dfe:Dfer_0878 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004319642.1 PFAM: Helix-turn-helix, HxlR type; KEGG: fjo:Fjoh_3848 HxlR family transcriptional regulator YP_004319643.1 KEGG: zpr:ZPR_3307 hypothetical protein YP_004319644.1 KEGG: lsp:Bsph_1996 response regulator receiver domain-containing protein YP_004319645.1 KEGG: lby:Lbys_0788 helix-TurN-helix, AraC domain YP_004319646.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cpi:Cpin_1109 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004319647.1 PFAM: glycoside hydrolase, family 43; KEGG: cpi:Cpin_2482 glycoside hydrolase 43 YP_004319648.1 KEGG: cpi:Cpin_5727 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004319649.1 KEGG: chu:CHU_1729 hypothetical protein YP_004319650.1 KEGG: sli:Slin_3081 alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase, family 43; Coagulation factor 5/8 type, C-terminal YP_004319651.1 PFAM: Sulfatase; KEGG: cpi:Cpin_3801 sulfatase YP_004319652.1 PFAM: phospholipase A1; KEGG: fjo:Fjoh_4607 outer membrane phospholipase A-like protein YP_004319653.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: pdi:BDI_0278 hypothetical protein YP_004319654.1 PFAM: RagB/SusD; KEGG: pdi:BDI_0279 hypothetical protein YP_004319655.1 KEGG: bfr:BF0296 outer membrane assembly protein YP_004319656.1 KEGG: tad:TRIADDRAFT_60671 hypothetical protein YP_004319657.1 PFAM: oxidoreductase, molybdopterin-binding domain; KEGG: cpi:Cpin_2409 oxidoreductase molybdopterin binding YP_004319658.1 manually curated; PFAM: Signal transduction response regulator, receiver domain; KEGG: bba:Bd0374 transcriptional regulator PhoB-like; SMART: Signal transduction response regulator, receiver domain YP_004319659.1 PFAM: NUDIX hydrolase domain; KEGG: cyj:Cyan7822_0119 NUDIX hydrolase YP_004319660.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: msm:MSMEG_0285 TetR family transcriptional regulator family protein YP_004319662.1 KEGG: sli:Slin_2791 two component transcriptional regulator, LytTR family YP_004319663.1 PFAM: Lantibiotic dehydratase, C-terminal; Lantibiotic dehydratase, N-terminal; KEGG: cpi:Cpin_1436 lantibiotic dehydratase domain protein YP_004319664.1 KEGG: fjo:Fjoh_1679 LytTR family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain YP_004319665.1 PFAM: Signal transduction histidine kinase, internal region; KEGG: zpr:ZPR_4185 histidine kinase internal region YP_004319666.1 KEGG: sac:SACOL1036 protease YP_004319667.1 KEGG: chu:CHU_0962 cold-shock DNA-binding protein family protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004319668.1 KEGG: phe:Phep_3004 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4 YP_004319669.1 PFAM: Cold-shock protein, DNA-binding; KEGG: fba:FIC_01546 cold shock protein CspA YP_004319670.1 KEGG: ppe:PEPE_0059 subtilisin-like serine protease YP_004319671.1 KEGG: tet:TTHERM_00499340 TPR Domain containing protein YP_004319672.1 PFAM: Fatty acid desaturase, type 1; KEGG: cpi:Cpin_4336 fatty acid desaturase YP_004319673.1 PFAM: Fatty acid desaturase, type 1; KEGG: dfe:Dfer_5153 fatty acid desaturase YP_004319674.1 PFAM: protein of unknown function DUF1080; KEGG: phe:Phep_2871 protein of unknown function DUF1080 YP_004319675.1 PFAM: chloramphenicol acetyltransferase; KEGG: zpr:ZPR_3084 chloramphenicol acetyltransferase YP_004319676.1 SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: dfe:Dfer_2168 AraC family transcriptional regulator YP_004319677.1 PFAM: KWG Leptospira; KEGG: ppy:PPE_04737 hypothetical protein YP_004319678.1 PFAM: SNARE associated Golgi protein; KEGG: saq:Sare_0132 SNARE associated Golgi protein YP_004319679.1 PFAM: Signal transduction histidine kinase, internal region; KEGG: phe:Phep_0589 histidine kinase internal region YP_004319680.1 PFAM: Redoxin; KEGG: bfs:BF3623 hypothetical protein YP_004319681.1 KEGG: phe:Phep_0588 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain YP_004319682.1 PFAM: DinB; KEGG: phe:Phep_2413 DinB family protein YP_004319683.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: phe:Phep_1339 short-chain dehydrogenase/reductase SDR YP_004319684.1 KEGG: tva:TVAG_424230 hypothetical protein YP_004319685.1 KEGG: cpi:Cpin_4289 glycoside hydrolase 5; PFAM: glycoside hydrolase, family 5; carbohydrate binding domain, family 6; SMART: cellulose binding, type IV YP_004319686.1 KEGG: cpi:Cpin_1463 hypothetical protein YP_004319687.1 TIGRFAM: phosphomethylpyrimidine kinase type-2; KEGG: zpr:ZPR_1974 phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1 YP_004319688.1 KEGG: phe:Phep_2782 glycoside hydrolase 2 sugar binding; PFAM: glycoside hydrolase, family 2, carbohydrate-binding; glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; glycoside hydrolase, family 2, TIM barrel YP_004319689.1 KEGG: phe:Phep_2807 glyoxalase/bleomycin resistance protein/dioxygenase YP_004319690.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dfe:Dfer_5411 glyoxalase/bleomycin resistance protein/dioxygenase YP_004319691.1 KEGG: scl:sce0206 two-component system sensor histidine kinase/response regulator, hybrid ('one-component system'); PFAM: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain YP_004319692.1 KEGG: cpi:Cpin_5632 alpha-1,2-mannosidase; TIGRFAM: alpha-1,2-mannosidase, PFAM: glycosyl hydrolase 92 YP_004319693.1 KEGG: chu:CHU_3778 hypothetical protein YP_004319694.1 PFAM: PepSY-associated TM helix; KEGG: dfe:Dfer_0495 PepSY-associated TM helix domain protein YP_004319695.1 manually curated; KEGG: dfe:Dfer_0494 hypothetical protein YP_004319696.1 KEGG: dfe:Dfer_0493 hypothetical protein YP_004319697.1 KEGG: aag:AaeL_AAEL005809 cohesin-subunit YP_004319698.1 KEGG: fjo:Fjoh_0274 RNA polymerase ECF-subfamily sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2 YP_004319699.1 PFAM: YCII-related; KEGG: fjo:Fjoh_0273 DGPFAETKE family protein YP_004319701.1 KEGG: phe:Phep_1451 hypothetical protein YP_004319703.1 KEGG: chu:CHU_3778 hypothetical protein YP_004319704.1 KEGG: chu:CHU_3253 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319705.1 KEGG: phe:Phep_1850 hypothetical protein YP_004319706.1 KEGG: dfe:Dfer_1351 trans-aconitate 2-methyltransferase; PFAM: methyltransferase type 12 YP_004319707.1 KEGG: phe:Phep_3686 CBS domain containing protein; PFAM: cystathionine beta-synthase, core; SMART: cystathionine beta-synthase, core YP_004319708.1 TIGRFAM: exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: cpi:Cpin_3378 exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase YP_004319709.1 KEGG: sli:Slin_1133 redoxin domain protein; HAMAP: thiol peroxidase Tpx; PFAM: Redoxin YP_004319710.1 PFAM: Cyclic nucleotide-binding domain; KEGG: cpi:Cpin_1544 Crp/Fnr family transcriptional regulator YP_004319711.1 PFAM: TonB-dependent receptor, plug; KEGG: dfe:Dfer_5310 hypothetical protein YP_004319712.1 KEGG: pam:PANA_0391 hypothetical protein YP_004319713.1 KEGG: cpi:Cpin_4552 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain YP_004319714.1 KEGG: phe:Phep_2608 hypothetical protein YP_004319715.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: phe:Phep_2609 glucose-methanol-choline oxidoreductase YP_004319716.1 PFAM: ABC transporter-like; KEGG: aps:CFPG_272 ABC-type phosphate transporter ATP-binding component; SMART: ATPase, AAA+ type, core YP_004319717.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: aps:CFPG_277 ABC-type phosphate transporter permease component PstA YP_004319718.1 KEGG: aps:CFPG_276 ABC-type phosphate transporter permease PstC; TIGRFAM: phosphate ABC transporter permease PstC; PFAM: Binding-protein-dependent transporters inner membrane component YP_004319719.1 KEGG: aps:CFPG_275 ABC-type phosphate transporter substrate-binding component YP_004319720.1 PFAM: Helix-turn-helix, HxlR type; KEGG: cpi:Cpin_1690 HxlR family transcriptional regulator YP_004319721.1 KEGG: phe:Phep_1571 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004319722.1 KEGG: pno:SNOG_06654 hypothetical protein YP_004319724.1 KEGG: fjo:Fjoh_3984 YaeC family lipoprotein; TIGRFAM: Lipoprotein YaeC; PFAM: NLPA lipoprotein YP_004319725.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: fjo:Fjoh_3985 DL-methionine transporter permease subunit YP_004319726.1 PFAM: ABC transporter-like; NIL domain; KEGG: fjo:Fjoh_3986 DL-methionine transporter ATP-binding subunit; SMART: NIL domain; ATPase, AAA+ type, core YP_004319727.1 PFAM: beta-lactamase-related; KEGG: phe:Phep_2343 beta-lactamase YP_004319728.1 KEGG: sli:Slin_3267 peptidase S9 prolyl oligopeptidase active site domain protein YP_004319729.1 KEGG: phe:Phep_2344 hypothetical protein YP_004319730.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: phe:Phep_2345 TonB-dependent receptor YP_004319731.1 KEGG: cpi:Cpin_4584 glycerone kinase; PFAM: Dak kinase; Dak phosphatase YP_004319732.1 KEGG: aav:Aave_4212 alpha,alpha-trehalose-phosphate synthase (UDP-forming) YP_004319733.1 KEGG: mpo:Mpop_0734 hypothetical protein YP_004319734.1 KEGG: dfe:Dfer_0262 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region YP_004319735.1 KEGG: cpi:Cpin_3951 aminopeptidase N-like protein YP_004319736.1 KEGG: phe:Phep_2476 thioesterase-like protein YP_004319737.1 KEGG: cpi:Cpin_5083 NmrA family protein YP_004319738.1 KEGG: phe:Phep_2423 hypothetical protein YP_004319739.1 KEGG: hor:Hore_21910 hypothetical protein YP_004319740.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pdi:BDI_0459 macrolide efflux pump YP_004319741.1 KEGG: tpd:Teth39_0600 carbohydrate kinase, FGGY; PFAM: carbohydrate kinase, FGGY, N-terminal; carbohydrate kinase, FGGY, C-terminal YP_004319742.1 KEGG: pml:ATP_00169 hypothetical protein YP_004319743.1 KEGG: ter:Tery_1715 NAD-dependent epimerase/dehydratase YP_004319744.1 KEGG: cpi:Cpin_5206 hypothetical protein YP_004319745.1 KEGG: phe:Phep_2831 sulfatase; PFAM: Sulfatase YP_004319746.1 KEGG: dfe:Dfer_1449 luciferase-like monooxygenase; TIGRFAM: Conserved hypothetical protein CHP03858, luciferase-like monooxygenase, PFAM: Luciferase-like, subgroup YP_004319747.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: cpi:Cpin_7169 endonuclease/exonuclease/phosphatase YP_004319748.1 KEGG: bth:BT_3784 alpha-1,2-mannosidase; TIGRFAM: alpha-1,2-mannosidase, PFAM: glycosyl hydrolase 92 YP_004319749.1 KEGG: mgr:MGG_02139 hypothetical protein YP_004319750.1 KEGG: phe:Phep_2428 protein of unknown function DUF1486 YP_004319751.1 KEGG: fbc:FB2170_11766 hypothetical protein YP_004319752.1 KEGG: hch:HCH_05568 AraC-type DNA-binding domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319753.1 KEGG: pdi:BDI_1618 glycoside hydrolase; TIGRFAM: alpha-1,2-mannosidase, PFAM: glycosyl hydrolase 92 YP_004319754.1 KEGG: bth:BT_4667 beta-galactosidase; PFAM: glycoside hydrolase, family 2, carbohydrate-binding; glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; glycoside hydrolase, family 2, TIM barrel YP_004319755.1 KEGG: pjd:Pjdr2_6156 hypothetical protein YP_004319756.1 KEGG: cpi:Cpin_5160 hypothetical protein YP_004319757.1 PFAM: alpha/beta hydrolase fold-1; KEGG: cpi:Cpin_4536 alpha/beta hydrolase fold protein YP_004319758.1 KEGG: cpi:Cpin_1274 chaperonin Cpn10; PFAM: chaperonin Cpn10; SMART: chaperonin Cpn10 YP_004319759.1 KEGG: cbe:Cbei_3742 hypothetical protein YP_004319760.1 KEGG: rpa:RPA4323 hypothetical protein YP_004319761.1 KEGG: cpi:Cpin_5339 glucose sorbosone dehydrogenase YP_004319762.1 PFAM: protein of unknown function DUF92, TMEM19; KEGG: cpi:Cpin_4686 protein of unknown function DUF92 transmembrane YP_004319763.1 KEGG: cts:Ctha_2338 hypothetical protein YP_004319764.1 KEGG: cpi:Cpin_5670 YceI family protein; PFAM: lipid/polyisoprenoid-binding, YceI-like; SMART: lipid/polyisoprenoid-binding, YceI-like YP_004319765.1 KEGG: bmq:BMQ_3633 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: KDPG/KHG aldolase; PFAM: KDPG/KHG aldolase YP_004319766.1 PFAM: mandelate racemase/muconate lactonizing enzyme, N-terminal; mandelate racemase/muconate lactonizing enzyme, C-terminal; KEGG: bmq:BMQ_3632 galactonate dehydratase; SMART: mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004319767.1 PFAM: Major facilitator superfamily MFS-1; KEGG: bld:BLi04069 hypothetical protein YP_004319768.1 PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: dfe:Dfer_1015 2-keto-3-deoxy-galactonokinase YP_004319769.1 PFAM: Major facilitator superfamily MFS-1; KEGG: phe:Phep_2211 major facilitator superfamily MFS_1 YP_004319770.1 PFAM: Kelch repeat type 1; KEGG: phe:Phep_2212 kelch repeat-containing protein YP_004319771.1 KEGG: phe:Phep_2213 N-acetylneuraminate lyase; PFAM: dihydrodipicolinate synthetase YP_004319772.1 KEGG: phe:Phep_2223 exo-alpha-sialidase YP_004319773.1 PFAM: dihydrodipicolinate synthetase; KEGG: phe:Phep_2224 dihydrodipicolinate synthetase YP_004319774.1 PFAM: BNR repeat; KEGG: phe:Phep_2227 hypothetical protein YP_004319775.1 KEGG: dfe:Dfer_0750 transcriptional regulator, GntR family with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR YP_004319776.1 KEGG: dfe:Dfer_0751 Ketopantoate reductase ApbA/PanE domain protein; TIGRFAM: Ketopantoate reductase ApbA/PanE; PFAM: Ketopantoate reductase ApbA/PanE, C-terminal; Ketopantoate reductase ApbA/PanE, N-terminal YP_004319777.1 KEGG: dfe:Dfer_0752 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004319778.1 KEGG: cak:Caul_2647 TonB-dependent receptor YP_004319779.1 KEGG: sli:Slin_4331 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319781.1 KEGG: cps:CPS_3140 hypothetical protein YP_004319783.1 PFAM: activator of Hsp90 ATPase homologue 1-like; KEGG: cpi:Cpin_4957 activator of HSP90 ATPase 1 family protein YP_004319784.1 KEGG: dfe:Dfer_5412 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004319786.1 KEGG: lby:Lbys_0186 hypothetical protein YP_004319787.1 KEGG: lby:Lbys_0185 hypothetical protein YP_004319788.1 KEGG: shm:Shewmr7_0349 hypothetical protein YP_004319789.1 PFAM: protein of unknown function DUF1814; KEGG: shm:Shewmr7_0348 hypothetical protein YP_004319790.1 KEGG: cpi:Cpin_0703 hypothetical protein YP_004319791.1 PFAM: Tetracycline regulation of excision, RteC; KEGG: fjo:Fjoh_4473 hypothetical protein YP_004319792.1 KEGG: lby:Lbys_0801 hypothetical protein YP_004319793.1 KEGG: lby:Lbys_0802 hypothetical protein YP_004319794.1 KEGG: lby:Lbys_0803 hypothetical protein YP_004319795.1 TIGRFAM: peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: cpi:Cpin_5698 methionine aminopeptidase, type I; PFAM: peptidase M24, structural domain YP_004319796.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: lby:Lbys_0806 transcriptional regulator, TetR family YP_004319798.1 PFAM: ferric-uptake regulator; KEGG: lby:Lbys_0800 transcription regulator YP_004319799.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: lby:Lbys_0799 fad-dependent pyridine nucleotide-disulfide oxidoreductase YP_004319800.1 PFAM: alpha/beta hydrolase fold-1; KEGG: bcj:BCAL2536A hydrolase YP_004319801.1 KEGG: cpi:Cpin_6108 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319802.1 PFAM: alpha/beta hydrolase fold-1; KEGG: abu:Abu_1144 alpha/beta hydrolase fold protein YP_004319803.1 KEGG: fjo:Fjoh_0187 cupin 2 domain-containing protein; PFAM: HTH transcriptional regulator, AraC; HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319804.1 PFAM: transposase, IS4-like; KEGG: bvu:BVU_1595 transposase YP_004319805.1 PFAM: alpha/beta hydrolase fold-1; KEGG: cpi:Cpin_3533 esterase YP_004319806.1 PFAM: Helix-turn-helix, HxlR type; KEGG: cpi:Cpin_3532 HxlR family transcriptional regulator YP_004319807.1 TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: lby:Lbys_0144 phage/plasmid-related protein tigr03299 YP_004319808.1 KEGG: lby:Lbys_0143 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_004319809.1 KEGG: zpr:ZPR_3495 hypothetical protein YP_004319810.1 KEGG: zpr:ZPR_3469 site-specific recombinase; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal YP_004319811.1 KEGG: zpr:ZPR_3496 site-specific recombinase; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal YP_004319812.1 TIGRFAM: glycerate kinase; KEGG: phe:Phep_3045 glycerate kinase; PFAM: glycerate kinase YP_004319813.1 PFAM: Acriflavin resistance protein; KEGG: cpi:Cpin_3981 acriflavin resistance protein YP_004319814.1 KEGG: cpi:Cpin_3982 efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004319815.1 PFAM: Outer membrane efflux protein; KEGG: dfe:Dfer_1000 outer membrane efflux protein YP_004319816.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sli:Slin_6443 transcriptional regulator, TetR family YP_004319817.1 KEGG: phe:Phep_1239 endothelin-converting enzyme 1; PFAM: peptidase M13; peptidase M13, neprilysin, C-terminal YP_004319818.1 KEGG: phe:Phep_1609 pyridoxal-5'-phosphate-dependent protein subunit beta; PFAM: pyridoxal phosphate-dependent enzyme, beta subunit YP_004319819.1 PFAM: transposase, IS4-like; KEGG: amr:AM1_5147 IS4 family transposase YP_004319820.1 PFAM: Signal transduction histidine kinase, internal region; KEGG: cpi:Cpin_5597 signal transduction histidine kinase, LytS YP_004319821.1 KEGG: cpi:Cpin_5598 two component transcriptional regulator, LytTR family; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain YP_004319822.1 KEGG: amd:AMED_1323 DedA-like membrane protein YP_004319823.1 PFAM: Phytase; KEGG: cpi:Cpin_1035 3-phytase YP_004319824.1 PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: cpi:Cpin_1033 hypothetical protein YP_004319825.1 KEGG: cpi:Cpin_1034 TonB-dependent receptor; TIGRFAM: Bacterial TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004319826.1 KEGG: cpi:Cpin_1731 hypothetical protein YP_004319827.1 KEGG: gfo:GFO_0972 metallo-beta-lactamase/rhodanese-like domain-containing protein; PFAM: beta-lactamase-like; SMART: beta-lactamase-like; Rhodanese-like YP_004319828.1 PFAM: Domain of unknown function DUF752; KEGG: phe:Phep_1235 protein of unknown function DUF752 YP_004319829.1 KEGG: phe:Phep_2907 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02757; PFAM: Conserved hypothetical protein CHP02757 YP_004319830.1 KEGG: phe:Phep_2908 cystathionine gamma-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004319831.1 KEGG: phe:Phep_2910 prolyl-tRNA synthetase; PFAM: prolyl-tRNA synthetase, class II, C-terminal; anticodon-binding; Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; TIGRFAM: prolyl-tRNA synthetase, class IIa, eukaryotic-type; HAMAP: prolyl-tRNA synthetase, class IIa, eukaryotic-type; SMART: prolyl-tRNA synthetase, class II, C-terminal YP_004319832.1 KEGG: phe:Phep_2911 hypothetical protein YP_004319833.1 KEGG: phe:Phep_2912 aromatic hydrocarbon degradation membrane protein YP_004319834.1 KEGG: mau:Micau_0233 activator of HSP90 ATPase 1 family protein YP_004319835.1 KEGG: lby:Lbys_0391 hypothetical protein YP_004319836.1 KEGG: lby:Lbys_0392 RNA polymerase, sigma-24 subunit, ecf subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004319837.1 KEGG: lby:Lbys_0394 hypothetical protein YP_004319838.1 PFAM: lipid/polyisoprenoid-binding, YceI-like; KEGG: cpi:Cpin_0225 YceI family protein YP_004319839.1 KEGG: lby:Lbys_0396 hypothetical protein YP_004319840.1 KEGG: sro:Sros_2581 hypothetical protein YP_004319841.1 PFAM: Ferritin/Dps protein; KEGG: dfe:Dfer_0327 ferritin Dps family protein YP_004319842.1 PFAM: Nodulation efficiency, NfeD; KEGG: pdi:BDI_0525 membrane-bound serine protease YP_004319843.1 KEGG: chu:CHU_2843 hypothetical protein YP_004319844.1 KEGG: phe:Phep_2915 peptidoglycan-binding LysM; PFAM: peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding Lysin subgroup YP_004319845.1 KEGG: phe:Phep_2916 uridine kinase; PFAM: phosphoribulokinase/uridine kinase YP_004319846.1 SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; KEGG: phe:Phep_2917 3-oxoacid CoA-transferase, B subunit; PFAM: Coenzyme A transferase YP_004319848.1 TIGRFAM: Conserved hypothetical protein CHP02436; KEGG: gfo:GFO_3239 hypothetical protein YP_004319849.1 SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: phe:Phep_2918 3-oxoacid CoA-transferase, A subunit; PFAM: Coenzyme A transferase YP_004319850.1 SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; Smr protein/MutS2 C-terminal; TIGRFAM: DNA mismatch repair protein MutS, type 2; KEGG: phe:Phep_2920 Smr protein/MutS2; HAMAP: DNA mismatch repair protein MutS, type 2; PFAM: Smr protein/MutS2 C-terminal; DNA mismatch repair protein MutS, C-terminal YP_004319851.1 KEGG: phe:Phep_2921 hypothetical protein YP_004319852.1 KEGG: phe:Phep_2922 alanine racemase domain protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: alanine racemase, N-terminal YP_004319853.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: phe:Phep_2923 GCN5-related N-acetyltransferase YP_004319854.1 KEGG: phe:Phep_2924 hypothetical protein YP_004319855.1 TIGRFAM: aspartate kinase domain; KEGG: phe:Phep_2925 aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_004319856.1 KEGG: fbc:FB2170_09831 hypothetical protein YP_004319857.1 PFAM: protein of unknown function DUF502; KEGG: phe:Phep_3031 protein of unknown function DUF502 YP_004319858.1 PFAM: alanine racemase, N-terminal; Mur ligase, central; Mur ligase, N-terminal; alanine racemase, C-terminal; TIGRFAM: alanine racemase; HAMAP: alanine racemase; KEGG: phe:Phep_3032 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase YP_004319859.1 PFAM: Regulatory protein RecX; KEGG: phe:Phep_3046 regulatory protein RecX YP_004319860.1 KEGG: naz:Aazo_4751 major facilitator superfamily protein YP_004319861.1 PFAM: Cyclic nucleotide-binding domain; KEGG: chu:CHU_1942 cyclic nucleotide binding regulatory protein YP_004319862.1 KEGG: fjo:Fjoh_0029 alkylhydroperoxidase; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: carboxymuconolactone decarboxylase YP_004319863.1 KEGG: zpr:ZPR_2886 membrane protein YP_004319864.1 KEGG: gfo:GFO_1947 hypothetical protein YP_004319865.1 KEGG: phe:Phep_2662 hypothetical protein YP_004319866.1 KEGG: fba:FIC_01546 cold shock protein CspA; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004319867.1 PFAM: Domain of unknown function DUF88; KEGG: pdi:BDI_2126 hypothetical protein YP_004319868.1 KEGG: fjo:Fjoh_0272 alkylhydroperoxidase; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: carboxymuconolactone decarboxylase YP_004319869.1 KEGG: dba:Dbac_1410 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor YP_004319870.1 KEGG: ptm:GSPATT00020775001 hypothetical protein YP_004319871.1 KEGG: fjo:Fjoh_0630 hypothetical protein YP_004319872.1 KEGG: ppy:PPE_03398 hypothetical protein YP_004319873.1 KEGG: phe:Phep_2246 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2 YP_004319874.1 PFAM: FecR protein; KEGG: phe:Phep_0327 FecR protein YP_004319875.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: bfr:BF0387 hypothetical protein YP_004319876.1 PFAM: RagB/SusD; KEGG: bfs:BF0333 hypothetical protein YP_004319877.1 PFAM: glycosyl hydrolase, family 88; KEGG: phe:Phep_0790 glycosyl hydrolase 88 YP_004319878.1 PFAM: glycoside hydrolase, family 29; KEGG: sus:acid_2655 alpha-L-fucosidase; SMART: glycoside hydrolase, family 29 YP_004319879.1 PFAM: alcohol dehydrogenase GroES-like; alcohol dehydrogenase, C-terminal; KEGG: sli:Slin_5217 alcohol dehydrogenase GroES domain protein YP_004319880.1 KEGG: sli:Slin_5218 hypothetical protein YP_004319881.1 PFAM: protein of unknown function DUF1349; KEGG: cpi:Cpin_0097 protein of unknown function DUF1349 YP_004319882.1 KEGG: dfe:Dfer_1586 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004319883.1 PFAM: FecR protein; KEGG: phe:Phep_0304 FecR protein YP_004319884.1 KEGG: tet:TTHERM_00000030 protein kinase domain containing protein YP_004319885.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dfe:Dfer_0640 TonB-dependent receptor plug YP_004319886.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_0639 RagB/SusD domain protein YP_004319887.1 PFAM: protein of unknown function DUF1680; KEGG: cpi:Cpin_0089 protein of unknown function DUF1680 YP_004319888.1 PFAM: protein of unknown function DUF1680; KEGG: dfe:Dfer_0635 protein of unknown function DUF1680 YP_004319889.1 KEGG: cpi:Cpin_6695 transcriptional regulator, GntR family with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR YP_004319890.1 KEGG: cpi:Cpin_6694 hypothetical protein YP_004319891.1 TIGRFAM: Amino acid adenylation; thioester reductase; KEGG: bmj:BMULJ_05001 non-ribosomal peptide synthetase module protein; PFAM: AMP-dependent synthetase/ligase; phosphopantetheine-binding; Male sterility, NAD-binding YP_004319892.1 KEGG: fjo:Fjoh_2004 beta-lactamase domain-containing protein; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004319893.1 KEGG: lsp:Bsph_4757 two-component system YycF/YycG regulatory protein YP_004319894.1 KEGG: phe:Phep_4244 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004319895.1 KEGG: sli:Slin_2735 oxidoreductase molybdopterin binding protein; PFAM: oxidoreductase, molybdopterin-binding domain; Moybdenum cofactor oxidoreductase, dimerisation YP_004319896.1 PFAM: cytochrome C, class I; KEGG: sli:Slin_2734 cytochrome C class I YP_004319897.1 KEGG: sli:Slin_2733 hypothetical protein YP_004319898.1 KEGG: dfe:Dfer_1618 hypothetical protein YP_004319899.1 PFAM: RagB/SusD; KEGG: dfe:Dfer_1619 RagB/SusD domain protein YP_004319900.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: dfe:Dfer_1620 TonB-dependent receptor YP_004319901.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: phe:Phep_2084 FAD dependent oxidoreductase YP_004319902.1 PFAM: succinylglutamate desuccinylase/aspartoacylase; KEGG: fjo:Fjoh_4403 succinylglutamate desuccinylase/aspartoacylase YP_004319903.1 KEGG: cpi:Cpin_5638 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; HAMAP: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase YP_004319904.1 PFAM: Cyclic nucleotide-binding domain; KEGG: cpi:Cpin_5637 Crp/Fnr family transcriptional regulator YP_004319905.1 KEGG: act:ACLA_092640 nuclear condensin complex subunit Smc4 YP_004319906.1 KEGG: coc:Coch_0853 hypothetical protein YP_004319907.1 KEGG: ptm:GSPATT00016044001 hypothetical protein YP_004319908.1 manually curated; KEGG: dfe:Dfer_5565 response regulator receiver protein YP_004319909.1 PFAM: metallo-dependent phosphatase; KEGG: dfe:Dfer_5386 metallophosphoesterase YP_004319910.1 SMART: ATPase, AAA+ type, core; TIGRFAM: phosphate transporter permease 1; KEGG: cpi:Cpin_4407 phosphate ABC transporter ATPase; PFAM: ABC transporter-like YP_004319911.1 KEGG: cpi:Cpin_4408 phosphate ABC transporter inner membrane subunit PstA; TIGRFAM: phosphate transporter permease 2; PFAM: Binding-protein-dependent transporters inner membrane component YP_004319912.1 KEGG: cpi:Cpin_4409 phosphate ABC transporter inner membrane subunit PstC; TIGRFAM: phosphate ABC transporter permease PstC; PFAM: Binding-protein-dependent transporters inner membrane component YP_004319913.1 KEGG: cpi:Cpin_4410 phosphate binding protein YP_004319914.1 KEGG: fba:FIC_01551 response regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004319915.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; PAS fold-3; KEGG: cpi:Cpin_4420 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAC motif; PAS YP_004319916.1 KEGG: sro:Sros_4115 response regulator receiver protein; PFAM: transcription regulator LuxR, C-terminal; SMART: transcription regulator LuxR, C-terminal YP_004319917.1 KEGG: hmu:Hmuk_2899 metallophosphoesterase YP_004319918.1 KEGG: cpi:Cpin_3241 hypothetical protein YP_004319919.1 KEGG: fjo:Fjoh_1837 hypothetical protein YP_004319920.1 KEGG: gfo:GFO_0046 secreted protein YP_004319921.1 PFAM: Signal transduction histidine kinase, internal region; ATPase-like, ATP-binding domain; KEGG: cpi:Cpin_2061 signal transduction histidine kinase, LytS YP_004319922.1 KEGG: cpi:Cpin_2060 two component transcriptional regulator, LytTR family; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain YP_004319923.1 KEGG: cpi:Cpin_2707 NAD(P)H dehydrogenase (quinone); HAMAP: NADH-azoreductase, FMN-dependent; PFAM: Flavodoxin-like fold YP_004319924.1 PFAM: RagB/SusD; KEGG: cpi:Cpin_6659 RagB/SusD domain protein YP_004319925.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: bfs:BF3572 hypothetical protein YP_004319926.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: zpr:ZPR_3178 TetR family regulatory protein YP_004319927.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; KEGG: cpi:Cpin_6789 type I phosphodiesterase/nucleotide pyrophosphatase YP_004319928.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: cpi:Cpin_2639 GCN5-related N-acetyltransferase YP_004319929.1 PFAM: protein of unknown function DUF417; KEGG: chu:CHU_1294 hypothetical protein YP_004319930.1 KEGG: coc:Coch_1608 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319931.1 KEGG: cpi:Cpin_4140 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; ferredoxin YP_004319932.1 KEGG: cpi:Cpin_4138 hypothetical protein YP_004319933.1 KEGG: cpi:Cpin_6035 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding YP_004319934.1 KEGG: hor:Hore_08450 efflux transporter , hydrophobe/amphiphile efflux-3 (HAE3) family YP_004319935.1 PFAM: Redoxin; KEGG: cpi:Cpin_5968 redoxin domain protein YP_004319936.1 PFAM: Redoxin; KEGG: phe:Phep_0061 redoxin domain protein YP_004319937.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: pdi:BDI_1677 hypothetical protein YP_004319938.1 PFAM: RagB/SusD; KEGG: pdi:BDI_1676 hypothetical protein YP_004319939.1 PFAM: Sulfatase; KEGG: dfe:Dfer_4501 sulfatase YP_004319940.1 KEGG: tet:TTHERM_00145000 cyclic nucleotide-binding domain containing protein YP_004319941.1 KEGG: cpi:Cpin_3298 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319942.1 KEGG: cpi:Cpin_3299 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004319943.1 KEGG: dfe:Dfer_0769 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319944.1 KEGG: phe:Phep_3168 acetyltransferase (isoleucine patch superfamily) YP_004319945.1 PFAM: Cupin 2, conserved barrel; KEGG: dfe:Dfer_0768 cupin 2 conserved barrel domain protein YP_004319946.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: sli:Slin_2186 short-chain dehydrogenase/reductase SDR; SMART: polyketide synthase/Fatty acid synthase, KR YP_004319947.1 KEGG: sli:Slin_1951 cupin 2 conserved barrel domain protein YP_004319948.1 KEGG: sli:Slin_0129 hypothetical protein YP_004319949.1 PFAM: GH3 auxin-responsive promoter; KEGG: sli:Slin_0118 GH3 auxin-responsive promoter YP_004319950.1 KEGG: mxa:MXAN_0697 aldo/keto reductase oxidoreductase; PFAM: NADP-dependent oxidoreductase domain YP_004319951.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: cpi:Cpin_4494 protein of unknown function DUF214 YP_004319952.1 PFAM: activator of Hsp90 ATPase homologue 1-like; KEGG: abc:ACICU_00957 hypothetical protein YP_004319953.1 KEGG: cat:CA2559_00265 hypothetical protein YP_004319954.1 KEGG: cat:CA2559_00255 regulatory protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319955.1 KEGG: phe:Phep_3146 arsenic resistance protein; TIGRFAM: Arsenical-resistance protein ACR3; PFAM: sodium symporter YP_004319956.1 KEGG: dfe:Dfer_1929 protein-tyrosine phosphatase, low molecular weight; PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight YP_004319957.1 KEGG: phe:Phep_3148 hypothetical protein YP_004319958.1 KEGG: phe:Phep_3149 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004319960.1 KEGG: wch:wcw_0522 terpene synthase YP_004319961.1 PFAM: glycosyl hydrolases family 32, N-terminal; glycosyl hydrolase 32, C-terminal; KEGG: bth:BT_3082 2,6-beta-D-fructofuranosidase precursor; SMART: glycoside hydrolase, family 32 YP_004319962.1 KEGG: fjo:Fjoh_4043 ribokinase-like domain-containing protein; PFAM: carbohydrate/purine kinase YP_004319963.1 PFAM: thioredoxin domain; KEGG: sli:Slin_0388 thioredoxin domain protein YP_004319964.1 PFAM: alcohol dehydrogenase GroES-like; alcohol dehydrogenase, C-terminal; KEGG: cpi:Cpin_4586 alcohol dehydrogenase GroES domain protein; SMART: polyketide synthase, enoylreductase YP_004319965.1 KEGG: fjo:Fjoh_2324 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319966.1 PFAM: Helix-turn-helix, HxlR type; KEGG: cpi:Cpin_4283 HxlR family transcriptional regulator YP_004319967.1 PFAM: nitroreductase-like; KEGG: cpi:Cpin_4284 nitroreductase YP_004319968.1 KEGG: olu:OSTLU_27805 predicted protein YP_004319969.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: phe:Phep_2349 NAD-dependent epimerase/dehydratase YP_004319970.1 KEGG: cpi:Cpin_2093 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319971.1 KEGG: cpi:Cpin_7188 sugar transporter; TIGRFAM: Sugar/inositol transporter; PFAM: general substrate transporter YP_004319972.1 PFAM: ROK; KEGG: cpi:Cpin_2424 ROK family protein YP_004319973.1 PFAM: glycosidase, PH1107-related; KEGG: bth:BT_3780 hypothetical protein YP_004319974.1 PFAM: RagB/SusD; KEGG: phe:Phep_4005 RagB/SusD domain protein YP_004319975.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: phe:Phep_4006 TonB-dependent receptor YP_004319976.1 KEGG: zpr:ZPR_2152 transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004319977.1 KEGG: dfe:Dfer_0345 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004319978.1 KEGG: cpi:Cpin_4241 glycoside hydrolase 29 (alpha-L-fucosidase); PFAM: glycoside hydrolase, family 29; SMART: glycoside hydrolase, family 29 YP_004319979.1 PFAM: RagB/SusD; KEGG: bvu:BVU_0215 hypothetical protein YP_004319980.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: bvu:BVU_0216 hypothetical protein YP_004319981.1 PFAM: FecR protein; KEGG: fjo:Fjoh_3252 anti-FecI sigma factor, FecR YP_004319982.1 KEGG: phe:Phep_2724 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004319983.1 KEGG: phe:Phep_1740 hypothetical protein YP_004319984.1 KEGG: dfe:Dfer_3118 hypothetical protein YP_004319985.1 PFAM: PilT protein, N-terminal; KEGG: sli:Slin_6219 twitching mobility protein PilT YP_004319986.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: sme:SMa1660 hypothetical protein YP_004319988.1 KEGG: cpi:Cpin_6409 hypothetical protein YP_004319989.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: phe:Phep_2553 TonB-dependent receptor plug YP_004319990.1 KEGG: phe:Phep_3454 hypothetical protein YP_004319991.1 PFAM: Signal transduction histidine kinase, internal region; KEGG: cpi:Cpin_2061 signal transduction histidine kinase, LytS YP_004319992.1 KEGG: bth:BT_1457 two-component system response regulator; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain YP_004319993.1 PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: dfe:Dfer_5385 filamentation induced by cAMP protein Fic YP_004319994.1 PFAM: Tetratricopeptide TPR2; KEGG: dfe:Dfer_0989 hypothetical protein YP_004319995.1 PFAM: ATPase-like, ATP-binding domain; KEGG: cpi:Cpin_4159 histidine kinase YP_004319996.1 PFAM: Helix-turn-helix, HxlR type; KEGG: dfe:Dfer_0879 HxlR family transcriptional regulator YP_004319997.1 KEGG: dfe:Dfer_0874 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold-1 YP_004319998.1 KEGG: dfe:Dfer_0873 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004319999.1 KEGG: dal:Dalk_4870 hypothetical protein YP_004320000.1 KEGG: bay:RBAM_005210 YddR YP_004320001.1 PFAM: hypothetical protein; KEGG: axy:AXYL_03503 CAAX amino terminal protease 1 YP_004320002.1 KEGG: cpi:Cpin_6802 hypothetical protein YP_004320003.1 KEGG: dfe:Dfer_3560 secreted repeat of unknown function YP_004320004.1 PFAM: cyclase; KEGG: sno:Snov_1110 cyclase YP_004320005.1 PFAM: Condensation domain; KEGG: dfe:Dfer_0880 condensation domain-containing protein YP_004320006.1 KEGG: cpi:Cpin_4160 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain YP_004320007.1 KEGG: cpi:Cpin_4159 histidine kinase; PFAM: Two component regulator three Y; Two component regulator propeller; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain YP_004320008.1 KEGG: cpi:Cpin_4861 hypothetical protein YP_004320009.1 SMART: Hedgehog/intein hint, N-terminal; KEGG: cpi:Cpin_4862 Hedgehog/intein hint domain protein YP_004320010.1 KEGG: cpi:Cpin_4863 hypothetical protein YP_004320011.1 TIGRFAM: Rhs element Vgr protein; KEGG: cpi:Cpin_4864 rhs element Vgr protein YP_004320012.1 KEGG: cpi:Cpin_4866 hypothetical protein YP_004320013.1 KEGG: cpi:Cpin_4867 hypothetical protein YP_004320014.1 KEGG: cpi:Cpin_4868 hypothetical protein YP_004320015.1 KEGG: cpi:Cpin_4869 hypothetical protein YP_004320016.1 KEGG: cpi:Cpin_4870 gpW/GP25 family protein YP_004320017.1 KEGG: cpi:Cpin_4871 hypothetical protein YP_004320018.1 KEGG: cpi:Cpin_4872 hypothetical protein YP_004320019.1 KEGG: cpi:Cpin_4873 hypothetical protein YP_004320020.1 KEGG: cpi:Cpin_4874 ATPase AAA; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core YP_004320021.1 KEGG: cpi:Cpin_4875 hypothetical protein YP_004320022.1 KEGG: cpi:Cpin_4876 PKD domain containing protein; PFAM: PKD domain; SMART: PKD/chitinase domain YP_004320023.1 KEGG: cpi:Cpin_4877 hypothetical protein YP_004320024.1 KEGG: dfe:Dfer_0873 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004320025.1 KEGG: dfe:Dfer_0873 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004320026.1 PFAM: methyladenine glycosylase; KEGG: cpi:Cpin_3455 methyladenine glycosylase YP_004320027.1 KEGG: sli:Slin_0884 secreted protein YP_004320028.1 KEGG: fjo:Fjoh_3850 hypothetical protein YP_004320029.1 KEGG: dfe:Dfer_1940 glycosyltransferase YP_004320030.1 PFAM: Helix-turn-helix, HxlR type; KEGG: cpi:Cpin_5668 HxlR family transcriptional regulator YP_004320031.1 KEGG: zpr:ZPR_2629 flavoprotein NADH-dependent oxidoreductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase N-terminal YP_004320032.1 KEGG: cpi:Cpin_6802 hypothetical protein YP_004320033.1 KEGG: cpi:Cpin_3609 hypothetical protein YP_004320034.1 KEGG: pdi:BDI_0239 RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004320035.1 PFAM: FecR protein; KEGG: pdi:BDI_0240 anti-sigma factor YP_004320036.1 KEGG: pdi:BDI_3126 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SMART: Secretin/TonB, short N-terminal YP_004320037.1 PFAM: RagB/SusD; KEGG: pdi:BDI_3127 hypothetical protein YP_004320038.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: dfe:Dfer_0901 NAD-dependent epimerase/dehydratase YP_004320039.1 KEGG: cpi:Cpin_6123 hypothetical protein YP_004320040.1 PFAM: Secretion protein HlyD; KEGG: cpi:Cpin_6122 secretion protein HlyD YP_004320041.1 PFAM: Outer membrane efflux protein; KEGG: cpi:Cpin_6121 outer membrane efflux protein YP_004320042.1 KEGG: cpi:Cpin_3797 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004320043.1 KEGG: cpi:Cpin_2757 NAD(P)H dehydrogenase (quinone); HAMAP: NADH-azoreductase, FMN-dependent; PFAM: Flavodoxin-like fold YP_004320044.1 KEGG: dfe:Dfer_5462 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004320045.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dfe:Dfer_5463 short-chain dehydrogenase/reductase SDR YP_004320046.1 KEGG: fps:FP0065 hypothetical protein YP_004320047.1 KEGG: vpo:Kpol_414p3 hypothetical protein YP_004320048.1 PFAM: YCII-related; KEGG: fjo:Fjoh_0273 DGPFAETKE family protein YP_004320049.1 KEGG: fjo:Fjoh_0272 alkylhydroperoxidase; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: carboxymuconolactone decarboxylase YP_004320050.1 KEGG: cpi:Cpin_3609 hypothetical protein YP_004320051.1 TIGRFAM: succinate dehydrogenase, cytochrome b558 subunit; KEGG: dfe:Dfer_3969 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family YP_004320052.1 KEGG: fjo:Fjoh_0273 DGPFAETKE family protein YP_004320053.1 KEGG: fjo:Fjoh_0273 DGPFAETKE family protein YP_004320054.1 PFAM: Pirin, C-terminal; KEGG: tad:TRIADDRAFT_50332 hypothetical protein YP_004320055.1 KEGG: pop:POPTR_752237 calcium dependent protein kinase 14 YP_004320056.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: dfe:Dfer_5446 NmrA family protein YP_004320057.1 PFAM: NUDIX hydrolase domain; KEGG: lby:Lbys_1394 NUDIX hydrolase YP_004320058.1 KEGG: dfe:Dfer_0903 sigma54 specific transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004320059.1 KEGG: ptm:GSPATT00015658001 hypothetical protein YP_004320060.1 KEGG: pdi:BDI_0239 RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2 YP_004320061.1 KEGG: cpi:Cpin_0577 two component transcriptional regulator, LytTR family; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain YP_004320062.1 KEGG: cpi:Cpin_1347 transcriptional regulator, NifA subfamily, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004320063.1 KEGG: cpi:Cpin_5844 catalase; PFAM: catalase-related subgroup; catalase-related immune responsive YP_004320064.1 KEGG: sli:Slin_3807 alpha/beta hydrolase fold-3 domain protein YP_004320065.1 KEGG: cpi:Cpin_1347 transcriptional regulator, NifA subfamily, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004320066.1 KEGG: dfe:Dfer_1740 alpha/beta hydrolase fold-3 domain protein YP_004320067.1 PFAM: Helix-turn-helix, HxlR type; KEGG: hth:HTH_1765 HxlR family transcriptional regulator YP_004320069.1 KEGG: dfe:Dfer_1472 hypothetical protein YP_004320070.1 KEGG: dfe:Dfer_1473 hypothetical protein YP_004320071.1 KEGG: cpi:Cpin_6061 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004320072.1 KEGG: cpi:Cpin_6062 hypothetical protein YP_004320073.1 KEGG: cpi:Cpin_3017 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein YP_004320074.1 KEGG: cpi:Cpin_3018 transporter hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein YP_004320075.1 KEGG: cpi:Cpin_3019 efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004320076.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: phe:Phep_2260 regulatory protein TetR YP_004320077.1 KEGG: fjo:Fjoh_4615 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004320078.1 KEGG: cpi:Cpin_4160 two component transcriptional regulator, LuxR family; PFAM: transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain YP_004320079.1 KEGG: pjd:Pjdr2_3149 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004320080.1 KEGG: cpi:Cpin_5068 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004320081.1 KEGG: lby:Lbys_1052 hypothetical protein YP_004320082.1 KEGG: lby:Lbys_1051 hypothetical protein YP_004320083.1 KEGG: lby:Lbys_1050 hypothetical protein YP_004320084.1 KEGG: phe:Phep_2847 hypothetical protein YP_004320085.1 KEGG: phe:Phep_0924 hypothetical protein YP_004320086.1 KEGG: csh:Closa_1906 transcriptional regulator, MerR family YP_004320087.1 KEGG: sbi:SORBI_04g036200 hypothetical protein YP_004320088.1 KEGG: sde:Sde_3000 response regulator receiver domain-containing protein; PFAM: LytTr, DNA-binding domain; SMART: LytTr, DNA-binding domain YP_004320089.1 KEGG: sli:Slin_5978 hypothetical protein YP_004320091.1 KEGG: phe:Phep_1652 hypothetical protein YP_004320092.1 KEGG: maa:MAG_3880 hypothetical protein YP_004320093.1 KEGG: cpi:Cpin_2265 hypothetical protein YP_004320094.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: lby:Lbys_1986 TonB-dependent receptor plug YP_004320095.1 PFAM: Redoxin; KEGG: lby:Lbys_2440 redoxin domain protein YP_004320096.1 KEGG: act:ACLA_007890 hypothetical protein YP_004320097.1 KEGG: sad:SAAV_0790 hypothetical protein YP_004320098.1 KEGG: cpy:Cphy_0959 hypothetical protein YP_004320099.1 KEGG: cbi:CLJ_B1951 spore coat assembly protein SafA YP_004320100.1 KEGG: zpr:ZPR_3433 hypothetical protein YP_004320101.1 KEGG: mpu:MYPU_1580 lipoprotein YP_004320102.1 KEGG: pop:POPTR_790156 hypothetical protein YP_004320103.1 KEGG: ara:Arad_12002 hypothetical protein; PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase YP_004320104.1 KEGG: dmo:Dmoj_GI16226 GI16226 gene product from transcript GI16226-RA YP_004320105.1 KEGG: lby:Lbys_1035 hypothetical protein YP_004320106.1 KEGG: lby:Lbys_2238 IS66 orf2 family protein; manually curated; PFAM: transposase (), IS66 Orf2-like YP_004320107.1 PFAM: transposase, IS66; KEGG: lby:Lbys_2230 transposase YP_004320108.1 KEGG: fre:Franean1_1867 hypothetical protein YP_004320110.1 KEGG: dae:Dtox_3709 hypothetical protein YP_004320111.1 KEGG: cbt:CLH_2146 hypothetical protein YP_004320112.1 KEGG: gca:Galf_0897 hypothetical protein YP_004320113.1 KEGG: fjo:Fjoh_3658 hypothetical protein YP_004320114.1 KEGG: ecp:ECP_1144 phage associated protein YP_004320115.1 PFAM: IstB-like ATP-binding protein; KEGG: zpr:ZPR_1312 probable insertion sequence ATP-binding protein, IS21 family YP_004320116.1 PFAM: Integrase, catalytic core; KEGG: zpr:ZPR_1311 transposase, IS21 family protein YP_004320117.1 SMART: Toll-Interleukin receptor; KEGG: syn:slr0658 hypothetical protein YP_004320118.1 KEGG: dol:Dole_2506 serine/threonine protein kinase; PFAM: serine/threonine-protein kinase-like domain; SMART: serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain YP_004320119.1 KEGG: tan:TA05125 hypothetical protein YP_004320120.1 KEGG: gfo:GFO_1594 hypothetical protein YP_004320121.1 KEGG: ptm:GSPATT00037621001 hypothetical protein YP_004320122.1 KEGG: ilo:IL0647 hypothetical protein YP_004320123.1 KEGG: phe:Phep_0767 UspA domain protein YP_004320124.1 KEGG: wbr:WGLp017 hypothetical protein YP_004320125.1 KEGG: sli:Slin_6979 IstB domain protein ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004320126.1 PFAM: Integrase, catalytic core; Resolvase, helix-turn-helix domain; KEGG: sli:Slin_6980 integrase catalytic region YP_004320127.1 KEGG: fba:FIC_01083 hypothetical protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004320128.1 PFAM: ATPase-like, ATP-binding domain; KEGG: fba:FIC_01084 two-component system sensor histidine kinase YP_004320129.1 KEGG: cdl:CDR20291_0712 penicillin-binding protein YP_004320130.1 KEGG: fjo:Fjoh_4844 hypothetical protein YP_004320131.1 KEGG: bao:BAMF_3060 hypothetical protein YP_004320132.1 KEGG: bao:BAMF_3058 hypothetical protein YP_004320133.1 SMART: HTTM; KEGG: bcq:BCQ_PI045 hypothetical protein YP_004320134.1 KEGG: phe:Phep_1764 hypothetical protein YP_004320135.1 KEGG: bth:BT_3112 hypothetical protein YP_004320136.1 KEGG: cpi:Cpin_2933 transcriptional regulator, TetR family YP_004320137.1 KEGG: pdi:BDI_3446 hypothetical protein YP_004320138.1 KEGG: mbu:Mbur_1003 hypothetical protein YP_004320139.1 PFAM: TonB-dependent receptor, beta-barrel; KEGG: fps:FP1882 TonB-dependent outer membrane receptorprecursor YP_004320140.1 KEGG: tal:Thal_1393 hypothetical protein YP_004320141.1 PFAM: KilA-N, DNA-binding domain; KEGG: gfo:GFO_2160 hypothetical protein YP_004320142.1 KEGG: abc:ACICU_03319 hypothetical protein YP_004320143.1 KEGG: cts:Ctha_1009 GCN5-related N-acetyltransferase YP_004320144.1 KEGG: cpi:Cpin_6641 hypothetical protein YP_004320146.1 KEGG: phe:Phep_0226 hypothetical protein YP_004320147.1 KEGG: fbc:FB2170_03590 hypothetical protein; PFAM: peptidase S41; SMART: peptidase S41 YP_004320148.1 PFAM: transposase, IS4-like; KEGG: bvu:BVU_1595 transposase YP_004320149.1 KEGG: bwe:BcerKBAB4_4734 hypothetical protein YP_004320150.1 KEGG: pcb:PC000277.03.0 hypothetical protein YP_004320151.1 KEGG: sli:Slin_1714 peptidase M48 Ste24p YP_004320152.1 KEGG: fjo:Fjoh_2153 hypothetical protein YP_004320153.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: sli:Slin_3774 protein of unknown function DUF214 YP_004320154.1 KEGG: bde:BDP_1704 sugar-binding protein of ABC transporter system, permease YP_004320155.1 KEGG: phe:Phep_0894 hypothetical protein YP_004320156.1 PFAM: transposase, IS116/IS110/IS902; KEGG: eba:ebA6749 transposase YP_004320157.1 KEGG: phe:Phep_0898 hypothetical protein YP_004320158.1 KEGG: sli:Slin_3929 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004320159.1 KEGG: dfe:Dfer_1307 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004320160.1 KEGG: cpi:Cpin_2942 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004320161.1 KEGG: dfe:Dfer_1306 transcriptional regulator, AraC family YP_004320162.1 KEGG: sli:Slin_3914 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold-1 YP_004320163.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: phe:Phep_1746 short-chain dehydrogenase/reductase SDR YP_004320164.1 SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: cpi:Cpin_6017 AraC family transcriptional regulator YP_004320165.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: lsp:Bsph_3454 acetyltransferase YP_004320166.1 KEGG: rbi:RB2501_05285 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004320167.1 KEGG: phe:Phep_3276 flavin reductase domain protein FMN-binding; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding YP_004320168.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: cpi:Cpin_4317 NAD-dependent epimerase/dehydratase YP_004320169.1 KEGG: cpi:Cpin_4316 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004320170.1 KEGG: rba:RB563 hypothetical protein YP_004320171.1 PFAM: Helix-turn-helix, HxlR type; KEGG: dfe:Dfer_1019 HxlR family transcriptional regulator YP_004320172.1 PFAM: Major facilitator superfamily MFS-1; KEGG: cpi:Cpin_6693 major facilitator superfamily MFS_1 YP_004320173.1 KEGG: zpr:ZPR_4372 bacterial regulatory helix-turn-helix protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004320174.1 KEGG: fjo:Fjoh_2325 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain YP_004320175.1 KEGG: fjo:Fjoh_4439 hypothetical protein YP_004320176.1 PFAM: Helix-turn-helix, HxlR type; KEGG: cpi:Cpin_3481 HxlR family transcriptional regulator YP_004320177.1 PFAM: Domain of unknown function DUF303, acetylesterase KEGG: bpu:BPUM_1130 acetylxylan esterase YP_004320178.1 KEGG: cpi:Cpin_3282 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004320179.1 KEGG: sti:Sthe_1151 3-demethylubiquinone-9 3-methyltransferase YP_004320180.1 PFAM: Tetratricopeptide TPR-1; KEGG: phe:Phep_1172 tetratricopeptide domain protein YP_004320181.1 PFAM: peptidase M20, dimerisation; KEGG: sli:Slin_4763 amidohydrolase YP_004320182.1 PFAM: peptidase M43, pregnancy-associated plasma-A; KEGG: lby:Lbys_2110 hypothetical protein YP_004320183.1 PFAM: RagB/SusD; KEGG: lby:Lbys_0487 ragb/susd domain protein YP_004320184.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: lby:Lbys_0486 TonB-dependent receptor plug YP_004320185.1 PFAM: FecR protein; KEGG: dfe:Dfer_5329 anti-FecI sigma factor, FecR YP_004320186.1 KEGG: dfe:Dfer_5328 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2 YP_004320187.1 KEGG: lil:LA_4133 Macro domain-containing protein; PFAM: Appr-1-p processing; SMART: Appr-1-p processing YP_004320188.1 KEGG: acp:A2cp1_1511 conserved hypothetical cytosolic protein YP_004320189.1 KEGG: ddi:DDB_G0281831 hypothetical protein YP_004320190.1 KEGG: cpi:Cpin_6161 hypothetical protein YP_004320191.1 KEGG: phe:Phep_2618 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004320192.1 PFAM: activator of Hsp90 ATPase homologue 1-like; KEGG: dfe:Dfer_4276 activator of HSP90 ATPase 1 family protein YP_004320193.1 KEGG: pti:PHATRDRAFT_17344 xanthine/uracil permease YP_004320194.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: phe:Phep_2383 glyoxalase/bleomycin resistance protein/dioxygenase YP_004320195.1 PFAM: acyltransferase 3; KEGG: cpi:Cpin_6638 acyltransferase 3 YP_004320196.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: zpr:ZPR_3325 TetR family transcriptional regulator protein YP_004320197.1 KEGG: cpi:Cpin_4318 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004320199.1 PFAM: Uncharacterised protein family UPF0027; KEGG: phe:Phep_0086 protein of unknown function UPF0027 YP_004320200.1 KEGG: phe:Phep_0087 transcriptional regulator YP_004320201.1 KEGG: cpi:Cpin_6094 hypothetical protein YP_004320202.1 manually curated; KEGG: phe:Phep_2499 hypothetical protein YP_004320203.1 KEGG: sli:Slin_3490 hypothetical protein YP_004320204.1 KEGG: cpi:Cpin_4460 cytochrome-c peroxidase; PFAM: Di-haem cytochrome C peroxidase YP_004320205.1 KEGG: cpi:Cpin_4461 hypothetical protein YP_004320206.1 KEGG: fjo:Fjoh_2177 hypothetical protein YP_004320207.1 KEGG: smd:Smed_3502 ECF subfamily RNA polymerase sigma-24 factor YP_004320208.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: smd:Smed_3503 glyoxalase/bleomycin resistance protein/dioxygenase YP_004320209.1 KEGG: dfe:Dfer_1330 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; ThiJ/PfpI; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004320210.1 PFAM: activator of Hsp90 ATPase homologue 1-like; KEGG: gfo:GFO_3491 hypothetical protein YP_004320211.1 KEGG: fjo:Fjoh_4305 hypothetical protein YP_004320212.1 PFAM: protein of unknown function DUF1801; KEGG: dfe:Dfer_5314 hypothetical protein YP_004320213.1 KEGG: dfe:Dfer_1328 3-demethylubiquinone-9 3-methyltransferase YP_004320214.1 PFAM: Luciferase-like, subgroup; KEGG: cpi:Cpin_6664 luciferase-like monooxygenase YP_004320215.1 KEGG: cpi:Cpin_2731 hypothetical protein YP_004320216.1 KEGG: fjo:Fjoh_2120 hypothetical protein YP_004320217.1 KEGG: zpr:ZPR_2633 hypothetical protein YP_004320218.1 PFAM: Auxin efflux carrier; KEGG: dfe:Dfer_5541 auxin efflux carrier YP_004320219.1 KEGG: cpi:Cpin_2849 sulfatase; PFAM: Sulfatase YP_004320220.1 PFAM: glycoside hydrolase, family 43; KEGG: cpi:Cpin_2847 glycoside hydrolase 43 YP_004320221.1 PFAM: RagB/SusD; KEGG: cpi:Cpin_2846 RagB/SusD domain protein YP_004320222.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: cpi:Cpin_2845 TonB-dependent receptor YP_004320223.1 KEGG: zpr:ZPR_1980 arylsulfatase (aryl-sulfate sulfohydrolase); PFAM: Sulfatase YP_004320224.1 KEGG: bfr:BF4381 two-component system sensor histidine kinase/response regulator hybrid; PFAM: ATPase-like, ATP-binding domain; Two component regulator three Y; Two component regulator propeller; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; HTH transcriptional regulator, AraC; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; Helix-turn-helix, AraC type, DNA binding domain YP_004320225.1 KEGG: phe:Phep_4195 hypothetical protein YP_004320226.1 KEGG: nve:NEMVE_v1g212854 hypothetical protein YP_004320227.1 KEGG: fjo:Fjoh_4221 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug YP_004320229.1 KEGG: zpr:ZPR_1634 hypothetical protein YP_004320230.1 PFAM: methyltransferase type 11; KEGG: sli:Slin_2196 methyltransferase type 12 YP_004320231.1 KEGG: lbf:LBF_0121 dihydrofolate reductase YP_004320232.1 KEGG: lby:Lbys_1035 hypothetical protein YP_004320233.1 KEGG: lby:Lbys_2238 IS66 orf2 family protein; manually curated; PFAM: transposase (), IS66 Orf2-like YP_004320234.1 PFAM: transposase, IS66; KEGG: lby:Lbys_2230 transposase YP_004320235.1 PFAM: Uncharacterised conserved protein UCP033199; KEGG: phe:Phep_3700 hypothetical protein YP_004320236.1 KEGG: cpi:Cpin_4673 ankyrin; PFAM: ankyrin repeat; SMART: ankyrin repeat YP_004320237.1 KEGG: dfe:Dfer_5573 catalase; PFAM: catalase-related subgroup; catalase-related immune responsive; ThiJ/PfpI YP_004320238.1 PFAM: protein of unknown function DUF892; KEGG: dfe:Dfer_5574 protein of unknown function DUF892 YP_004320239.1 KEGG: noc:Noc_0215 hypothetical protein YP_004320240.1 KEGG: phe:Phep_2624 hypothetical protein YP_004320241.1 PFAM: glycosyl hydrolases family 32, N-terminal; KEGG: cpi:Cpin_4606 glycoside hydrolase 43 YP_004320242.1 KEGG: mch:Mchl_5168 hypothetical protein YP_004320243.1 KEGG: phe:Phep_3057 hypothetical protein YP_004320244.1 PFAM: glycoside hydrolase, family 43; KEGG: cpi:Cpin_6044 glycoside hydrolase 43 YP_004320245.1 PFAM: glycoside hydrolase, family 2, carbohydrate-binding; glycoside hydrolase, family 2, TIM barrel; KEGG: bfr:BF1741 beta-galactosidase YP_004320246.1 PFAM: RagB/SusD; KEGG: bvu:BVU_0390 hypothetical protein YP_004320247.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: bvu:BVU_0389 hypothetical protein YP_004320248.1 KEGG: cpi:Cpin_2808 transcriptional regulator, AraC family; PFAM: ThiJ/PfpI; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004320249.1 SMART: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: eat:EAT1b_0864 glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004320250.1 PFAM: MaoC-like dehydratase; KEGG: phe:Phep_2877 MaoC domain protein dehydratase YP_004320251.1 KEGG: cpi:Cpin_2493 hypothetical protein YP_004320252.1 PFAM: Uncharacterised protein family YphA; KEGG: cpi:Cpin_6032 DoxX family protein YP_004320253.1 KEGG: ang:An14g05765 hypothetical protein YP_004320255.1 PFAM: oxidoreductase, N-terminal; KEGG: sli:Slin_4997 oxidoreductase domain protein YP_004320256.1 KEGG: bcq:BCQ_2888 DNA alkylation repair enzyme YP_004320257.1 PFAM: Molybdopterin biosynthesis MoaE; KEGG: rbi:RB2501_05280 molybdopterinconverting factor, subunit YP_004320258.1 PFAM: Chromate transporter; KEGG: pdi:BDI_3351 chromate transporter YP_004320259.1 PFAM: Chromate transporter; KEGG: pdi:BDI_3350 chromate transporter YP_004320260.1 PFAM: acyltransferase 3; KEGG: cpi:Cpin_6655 acyltransferase 3 YP_004320261.1 KEGG: chu:CHU_2097 hypothetical protein YP_004320262.1 KEGG: chu:CHU_2098 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004320263.1 KEGG: sli:Slin_6554 hypothetical protein YP_004320264.1 PFAM: negative transcriptional regulator; KEGG: cpi:Cpin_5889 FMN-binding negative transcriptional regulator YP_004320265.1 PFAM: myo-inositol-1-phosphate synthase; myo-inositol-1-phosphate synthase, GAPDH-like; KEGG: dfe:Dfer_3127 myo-inositol-1-phosphate synthase YP_004320266.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: cpi:Cpin_2250 TonB-dependent receptor YP_004320268.1 KEGG: fjo:Fjoh_4309 hypothetical protein YP_004320269.1 KEGG: dat:HRM2_02150 helicase-family protein; PFAM: Helicase/RNase D C-terminal, HRDC domain; SMART: Helicase/RNase D C-terminal, HRDC domain YP_004320270.1 KEGG: cpi:Cpin_2667 DNA mismatch repair protein MutS domain protein; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal YP_004320271.1 KEGG: fjo:Fjoh_2364 MIP family channel protein; TIGRFAM: Aquaporin; PFAM: Major intrinsic protein YP_004320272.1 KEGG: cpi:Cpin_5714 hypothetical protein YP_004320273.1 PFAM: protein of unknown function DUF2086; KEGG: phe:Phep_0319 prolyl 4-hydroxylase, subunit alpha YP_004320274.1 KEGG: phe:Phep_0318 HhH-GPD family protein; PFAM: HhH-GPD domain; 8-oxoguanine DNA glycosylase, N-terminal; SMART: HhH-GPD domain YP_004320275.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rer:RER_34940 hypothetical protein YP_004320276.1 TIGRFAM: glucokinase; KEGG: slt:Slit_0981 glucokinase; PFAM: glucokinase YP_004320277.1 KEGG: cpi:Cpin_1305 gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_004320278.1 KEGG: sno:Snov_1277 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein YP_004320279.1 KEGG: zpr:ZPR_2152 transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004320280.1 PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: zpr:ZPR_3188 TonB-dependent receptor Plug domain protein YP_004320281.1 PFAM: RagB/SusD; KEGG: zpr:ZPR_3189 RagB/SusD family protein YP_004320282.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: lby:Lbys_2050 TonB-dependent receptor YP_004320283.1 PFAM: RagB/SusD; KEGG: lby:Lbys_2051 ragb/susd domain protein YP_004320284.1 KEGG: pdi:BDI_1331 H+/gluconate symporter and related permease; TIGRFAM: gluconate transporter; PFAM: gluconate transporter YP_004320285.1 KEGG: tye:THEYE_A0033 nucleotidyltransferase; PFAM: Domain of unknown function DUF294, nucleotidyltransferase ; cystathionine beta-synthase, core; Domain of unknown function DUF294, nucleotidyltransferase substrate-binding; SMART: cystathionine beta-synthase, core YP_004320286.1 KEGG: fbc:FB2170_03950 DNA polymerase III alpha subunit; PFAM: exonuclease, RNase T/DNA polymerase III; SMART: exonuclease YP_004320287.1 KEGG: cpi:Cpin_4128 hypothetical protein; TIGRFAM: protein of unknown function DUF2196; PFAM: protein of unknown function DUF2196 YP_004320288.1 KEGG: fba:FIC_01551 response regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004320289.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: fba:FIC_01711 two-component hybrid sensor and regulator; SMART: ATPase-like, ATP-binding domain; PAC motif; PAS; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004320290.1 KEGG: geo:Geob_3553 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004320291.1 PFAM: glycosyl transferase, family 2; KEGG: phe:Phep_3180 glycosyl transferase 2 YP_004320292.1 PFAM: glycosyl transferase, family 2; KEGG: phe:Phep_3181 glycosyl transferase 2 YP_004320293.1 KEGG: cat:CA2559_11233 hypothetical protein YP_004320294.1 KEGG: phe:Phep_3184 hypothetical protein YP_004320295.1 KEGG: phe:Phep_3185 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase; PFAM: Amidohydrolase 1 YP_004320296.1 KEGG: fba:FIC_00777 glucose-1-phosphate adenylyltransferase; PFAM: nucleotidyl transferase YP_004320297.1 PFAM: Starch synthase, catalytic domain; glycosyl transferase, group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type; HAMAP: glycogen/starch synthases, ADP-glucose type; KEGG: fba:FIC_00588 glycogen synthase, ADP-glucose transglucosylase YP_004320298.1 KEGG: dfe:Dfer_1955 1,4-alpha-glucan branching enzyme; PFAM: alpha-amylase, C-terminal all beta; glycoside hydrolase, family 13, N-terminal; glycosyl hydrolase, family 13, catalytic domain; TIGRFAM: 1,4-alpha-glucan-branching enzyme; HAMAP: 1,4-alpha-glucan-branching enzyme; SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain YP_004320299.1 PFAM: glycoside hydrolase, family 31; KEGG: phe:Phep_3309 alpha-glucosidase YP_004320300.1 PFAM: Condensation domain; KEGG: cpi:Cpin_1444 condensation domain protein YP_004320301.1 PFAM: ATP phosphoribosyltransferase, catalytic domain; histidine biosynthesis HisG, C-terminal; TIGRFAM: ATP phosphoribosyltransferase, catalytic domain; histidine biosynthesis HisG, C-terminal; HAMAP: histidine biosynthesis HisG, ATP phosphoribosyltransferase, subgroup; KEGG: phe:Phep_3191 ATP phosphoribosyltransferase YP_004320302.1 PFAM: histidinol dehydrogenase, prokaryotic-type; TIGRFAM: histidinol dehydrogenase, prokaryotic-type; HAMAP: histidinol dehydrogenase, prokaryotic-type; KEGG: phe:Phep_3192 histidinol dehydrogenase YP_004320303.1 PFAM: Aminotransferase, class I/classII; TIGRFAM: histidinol-phosphate aminotransferase; HAMAP: histidinol-phosphate aminotransferase; KEGG: cpi:Cpin_1819 histidinol-phosphate aminotransferase YP_004320304.1 PFAM: imidazoleglycerol-phosphate dehydratase; polynucleotide kinase 3 phosphatase, central region; TIGRFAM: histidinol-phosphatase; histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; HAMAP: imidazoleglycerol-phosphate dehydratase; KEGG: phe:Phep_3194 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_004320305.1 TIGRFAM: imidazole glycerol phosphate synthase, subunit H; HAMAP: imidazole glycerol phosphate synthase, subunit H; KEGG: phe:Phep_3195 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I, C-terminal YP_004320306.1 HAMAP: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: phe:Phep_3196 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imid azole-4-carboxamideisomerase; PFAM: histidine biosynthesis YP_004320307.1 TIGRFAM: histidine biosynthesis, HisF; HAMAP: histidine biosynthesis, HisF; KEGG: phe:Phep_3197 imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis YP_004320308.1 PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase-like; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase; HAMAP: phosphoribosyl-ATP pyrophosphohydrolase; histidine biosynthesis bifunctional protein HisIE; KEGG: phe:Phep_3198 phosphoribosyl-ATP diphosphatase YP_004320309.1 KEGG: phe:Phep_3199 hypothetical protein; PFAM: WD40 repeat, subgroup; SMART: WD40 repeat YP_004320310.1 KEGG: cpi:Cpin_1933 hypothetical protein YP_004320311.1 KEGG: fps:FP1888 aminopeptidase precursor YP_004320312.1 KEGG: mei:Msip34_0931 arsenate reductase and related; TIGRFAM: transcriptional regulator Spx/MgsR; PFAM: Arsenate reductase-like YP_004320313.1 PFAM: peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; HAMAP: peptidyl-tRNA hydrolase; KEGG: phe:Phep_0584 peptidyl-tRNA hydrolase YP_004320314.1 TIGRFAM: ribosomal protein L25, long-form; HAMAP: ribosomal protein L25, long-form; KEGG: phe:Phep_0583 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25, short-form YP_004320315.1 TIGRFAM: phosphoribosyl pyrophosphokinase; KEGG: phe:Phep_0582 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_004320316.1 KEGG: phe:Phep_0581 hypothetical protein YP_004320317.1 PFAM: peptidase C1A, papain C-terminal; KEGG: fjo:Fjoh_1152 peptidase C1B, bleomycin hydrolase YP_004320318.1 KEGG: cpi:Cpin_0901 hypothetical protein YP_004320319.1 KEGG: cpi:Cpin_0759 hypothetical protein YP_004320320.1 KEGG: cli:Clim_0634 hypothetical protein YP_004320321.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: phe:Phep_3274 short-chain dehydrogenase/reductase SDR YP_004320322.1 KEGG: lps:LPST_C2516 cell surface protein precursor YP_004320323.1 KEGG: gfo:GFO_3102 single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_004320324.1 KEGG: dfe:Dfer_5116 hypothetical protein YP_004320325.1 PFAM: peroxiredoxin, OsmC-like protein; KEGG: cpi:Cpin_7165 OsmC family protein YP_004320326.1 PFAM: transcription elongation factor, GreA/GreB, C-terminal; KEGG: cpi:Cpin_7065 GreA/GreB family elongation factor YP_004320327.1 KEGG: fjo:Fjoh_0870 hypothetical protein YP_004320328.1 KEGG: pdi:BDI_2281 hypothetical protein YP_004320329.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: cpi:Cpin_1468 TonB-dependent receptor YP_004320330.1 PFAM: TonB-dependent receptor, plug; KEGG: phe:Phep_2645 TonB-dependent receptor plug YP_004320331.1 PFAM: RagB/SusD; KEGG: phe:Phep_2644 RagB/SusD domain protein YP_004320332.1 KEGG: phe:Phep_3489 sulfatase; PFAM: Sulfatase YP_004320333.1 KEGG: phe:Phep_2214 glycosyl hydrolase BNR repeat-containing protein YP_004320334.1 TIGRFAM: glycosyl transferase, family 19; KEGG: phe:Phep_3513 lipid-A-disaccharide synthase; PFAM: glycosyl transferase, family 19 YP_004320336.1 TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; HAMAP: Survival protein SurE-like phosphatase/nucleotidase; KEGG: phe:Phep_3515 stationary phase survival protein SurE; PFAM: Survival protein SurE-like phosphatase/nucleotidase YP_004320337.1 PFAM: CsbD-like; KEGG: cpi:Cpin_1931 CsbD family protein YP_004320338.1 TIGRFAM: acetate-CoA ligase; KEGG: cpi:Cpin_0917 acetate/CoA ligase; PFAM: AMP-dependent synthetase/ligase YP_004320339.1 KEGG: lby:Lbys_1843 hypothetical protein YP_004320340.1 PFAM: general substrate transporter; KEGG: fjo:Fjoh_1409 major facilitator transporter YP_004320341.1 PFAM: ribosomal protein L28; manually curated; TIGRFAM: ribosomal protein L28; KEGG: phe:Phep_3521 ribosomal protein L28; HAMAP: ribosomal protein L28 YP_004320342.1 TIGRFAM: ribosomal protein L33; HAMAP: ribosomal protein L33; KEGG: phe:Phep_3522 ribosomal protein L33; PFAM: ribosomal protein L33 YP_004320343.1 KEGG: phe:Phep_3523 hypothetical protein YP_004320344.1 TIGRFAM: cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: phe:Phep_3524 signal recognition particle-docking protein FtsY; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core YP_004320345.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: ribosomal protein S12 methylthiotransferase RimO; methylthiotransferase; KEGG: phe:Phep_3525 MiaB-like tRNA modifying enzyme YliG; HAMAP: ribosomal protein S12 methylthiotransferase RimO; PFAM: methylthiotransferase, N-terminal; radical SAM; deoxyribonuclease/rho motif-related TRAM YP_004320346.1 KEGG: phe:Phep_3526 hypothetical protein; HAMAP: Uncharacterised protein family UPF0747; PFAM: Uncharacterised protein family UPF0747 YP_004320347.1 KEGG: phe:Phep_1307 protein of unknown function DUF419 YP_004320348.1 KEGG: phe:Phep_0581 hypothetical protein YP_004320349.1 KEGG: phe:Phep_3443 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00701; PFAM: Uncharacterised protein family UPF0093 YP_004320350.1 KEGG: phe:Phep_3444 uroporphyrinogen decarboxylase; manually curated; TIGRFAM: uroporphyrinogen decarboxylase HemE; PFAM: uroporphyrinogen decarboxylase (URO-D); HAMAP: uroporphyrinogen decarboxylase HemE YP_004320351.1 KEGG: phe:Phep_3445 hypothetical protein YP_004320352.1 KEGG: phe:Phep_3446 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004320353.1 KEGG: phe:Phep_3447 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004320354.1 PFAM: Aminotransferase class-III; TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; HAMAP: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; KEGG: phe:Phep_3448 glutamate-1-semialdehyde-2,1-aminomutase YP_004320355.1 KEGG: phe:Phep_3449 porphobilinogen synthase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase YP_004320356.1 PFAM: porphobilinogen deaminase, N-terminal; Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; manually curated; TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; KEGG: phe:Phep_3450 porphobilinogen deaminase; HAMAP: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase YP_004320357.1 TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; HAMAP: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; KEGG: phe:Phep_3451 glutamyl-tRNA reductase; PFAM: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal YP_004320358.1 KEGG: phe:Phep_0988 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SMART: Outer membrane chaperone Skp (OmpH) YP_004320359.1 KEGG: phe:Phep_0987 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SMART: Outer membrane chaperone Skp (OmpH) YP_004320360.1 KEGG: phe:Phep_0986 outer membrane protein assembly complex, YaeT protein; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number YP_004320361.1 PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; HAMAP: Di-trans-poly-cis-decaprenylcistransferase-like; KEGG: phe:Phep_0985 undecaprenyl diphosphate synthase YP_004320362.1 KEGG: phe:Phep_0984 hypothetical protein YP_004320363.1 KEGG: phe:Phep_0983 inorganic polyphosphate/ATP-NAD kinase; HAMAP: inorganic polyphosphate/ATP-NAD kinase, predicted; PFAM: inorganic polyphosphate/ATP-NAD kinase, predicted YP_004320364.1 KEGG: phe:Phep_0982 CBS domain containing protein; PFAM: cystathionine beta-synthase, core; SMART: cystathionine beta-synthase, core YP_004320365.1 PFAM: alpha/beta hydrolase fold-1; KEGG: phe:Phep_0981 alpha/beta hydrolase fold protein YP_004320366.1 KEGG: phe:Phep_0980 GatB/YqeY domain-containing protein YP_004320367.1 KEGG: phe:Phep_0979 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004320368.1 KEGG: phe:Phep_0978 hypothetical protein YP_004320369.1 TIGRFAM: UbiE/COQ5 methyltransferase; HAMAP: UbiE/COQ5 methyltransferase; KEGG: phe:Phep_0977 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase YP_004320370.1 TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; KEGG: phe:Phep_0976 GTP-binding protein HSR1-related; PFAM: GTP-binding protein, HSR1-related YP_004320371.1 manually curated; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase-related; KEGG: phe:Phep_0975 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase YP_004320373.1 KEGG: cat:CA2559_11613 hypothetical protein YP_004320374.1 KEGG: phe:Phep_0974 oligoendopeptidase, M3 family; TIGRFAM: peptidase M3B, oligoendopeptidase-related clade 2; PFAM: peptidase M3A/M3B, thimet/oligopeptidase F YP_004320375.1 KEGG: fjo:Fjoh_4702 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG YP_004320376.1 manually curated; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: fjo:Fjoh_1356 HAD family hydrolase; PFAM: Haloacid dehalogenase-like hydrolase YP_004320377.1 KEGG: ote:Oter_3045 dipeptidyl-peptidase III; PFAM: peptidase M49, dipeptidyl-peptidase III YP_004320378.1 KEGG: cpi:Cpin_2333 hypothetical protein YP_004320379.1 KEGG: phe:Phep_0415 seryl-tRNA synthetase; TIGRFAM: Seryl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal YP_004320380.1 TIGRFAM: Uncharacterised protein family UPF0011; HAMAP: ribosomal RNA small subunit methyltransferase I; KEGG: phe:Phep_0414 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; PFAM: Tetrapyrrole methylase YP_004320381.1 KEGG: phe:Phep_0413 hypothetical protein YP_004320382.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; manually curated; TIGRFAM: Apolipoprotein N-acyltransferase; KEGG: phe:Phep_0412 apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase YP_004320383.1 KEGG: sli:Slin_6323 lipoprotein YP_004320384.1 KEGG: phe:Phep_0411 NAD+ synthetase; TIGRFAM: NAD synthase; PFAM: NAD/GMP synthase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004320385.1 KEGG: phe:Phep_0410 hypothetical protein YP_004320386.1 KEGG: phe:Phep_0409 hypothetical protein YP_004320387.1 KEGG: amd:AMED_0188 hypothetical protein YP_004320388.1 KEGG: cpi:Cpin_6934 5'-nucleotidase, lipoprotein e(P4) family; TIGRFAM: 5-nucleotidase lipoprotein e(P4); PFAM: acid phosphatase (class B) YP_004320389.1 KEGG: phe:Phep_0398 hypothetical protein YP_004320390.1 TIGRFAM: ATPase, F1 complex, subunit gamma; HAMAP: ATPase, F1 complex, subunit gamma; KEGG: phe:Phep_0397 ATP synthase F1 gamma subunit; PFAM: ATPase, F1 complex, subunit gamma YP_004320391.1 TIGRFAM: ATPase, F1 complex, subunit alpha; HAMAP: ATPase, F1 complex, subunit alpha; KEGG: phe:Phep_0396 F0F1 ATP synthase subunit alpha; PFAM: ATPase, alpha/subunit beta, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/subunit beta, N-terminal; ATPase, F1/V1/A1 complex, alpha/subunit beta, C-terminal YP_004320392.1 TIGRFAM: ATPase, F1 complex, OSCP/subunit delta; HAMAP: ATPase, F1 complex, OSCP/subunit delta; KEGG: phe:Phep_0395 ATP synthase F1 subunit delta; PFAM: ATPase, F1 complex, OSCP/subunit delta YP_004320393.1 TIGRFAM: ATPase, F0 complex, subunit B, bacterial; HAMAP: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; KEGG: phe:Phep_0394 ATP synthase F0 B subunit; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast YP_004320394.1 TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; HAMAP: ATPase, F0 complex, subunit C; KEGG: phe:Phep_0393 ATP synthase F0 C subunit; PFAM: ATPase, F0/V0 complex, subunit C YP_004320395.1 TIGRFAM: ATPase, F0 complex, subunit A; HAMAP: ATPase, F0 complex, subunit A; KEGG: phe:Phep_0392 ATP synthase F0 subunit alpha; PFAM: ATPase, F0 complex, subunit A YP_004320396.1 KEGG: phe:Phep_0391 hypothetical protein YP_004320397.1 KEGG: phe:Phep_0390 hypothetical protein YP_004320398.1 PFAM: Tetratricopeptide TPR-1; KEGG: phe:Phep_0389 tetratricopeptide domain protein YP_004320399.1 KEGG: phe:Phep_0388 glycosyl transferase 51; PFAM: glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase YP_004320400.1 SMART: excinuclease ABC, C subunit, N-terminal; TIGRFAM: excinuclease ABC, C subunit; KEGG: phe:Phep_0387 excinuclease ABC, C subunit; HAMAP: excinuclease ABC, C subunit; PFAM: excinuclease ABC, C subunit, C-terminal; excinuclease ABC, C subunit, N-terminal YP_004320401.1 TIGRFAM: Gliding motility associated protein GldN; KEGG: phe:Phep_0386 hypothetical protein YP_004320402.1 PFAM: Sulphatase-modifying factor; KEGG: phe:Phep_0383 protein of unknown function DUF323 YP_004320403.1 PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; KEGG: phe:Phep_0382 uroporphyrinogen III synthase HEM4 YP_004320404.1 KEGG: phe:Phep_0381 hypothetical protein YP_004320405.1 TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: cak:Caul_3954 succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase domain YP_004320406.1 PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: phe:Phep_0477 2OG-Fe(II) oxygenase YP_004320407.1 KEGG: sli:Slin_0507 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold-1 YP_004320408.1 KEGG: phe:Phep_0636 peptidase M42 family protein; PFAM: peptidase M42 YP_004320409.1 KEGG: cpi:Cpin_1297 major facilitator superfamily MFS_1; manually curated; PFAM: Major facilitator superfamily MFS-1 YP_004320410.1 KEGG: cpi:Cpin_3100 oxidoreductase YP_004320411.1 PFAM: Pterin-binding; manually curated; KEGG: phe:Phep_3663 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase YP_004320412.1 PFAM: Domain of unknown function DUF1599; KEGG: phe:Phep_3662 protein of unknown function DUF1599 YP_004320413.1 PFAM: Uncharacterised protein family YphA; KEGG: phe:Phep_3661 DoxX family protein YP_004320414.1 HAMAP: shikimate kinase; KEGG: phe:Phep_3659 shikimate kinase; PFAM: shikimate kinase YP_004320415.1 PFAM: protein of unknown function DUF721/UPF0232; KEGG: phe:Phep_0535 protein of unknown function DUF721 YP_004320416.1 TIGRFAM: DNA-binding, RecF; HAMAP: DNA-binding, RecF; KEGG: phe:Phep_0534 DNA replication and repair protein RecF; PFAM: RecF/RecN/SMC YP_004320417.1 PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: phe:Phep_0533 tetratricopeptide TPR_2 repeat protein YP_004320418.1 TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: phe:Phep_0527 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase YP_004320419.1 KEGG: rmr:Rmar_0024 hypothetical protein YP_004320420.1 KEGG: phe:Phep_0526 hypothetical protein YP_004320421.1 PFAM: peroxiredoxin, OsmC-like protein; KEGG: phe:Phep_0515 OsmC family protein YP_004320422.1 KEGG: phe:Phep_0513 lipoyl synthase; PFAM: radical SAM; TIGRFAM: Lipoate synthase; HAMAP: Lipoate synthase; SMART: Elongator protein 3/MiaB/NifB YP_004320423.1 KEGG: pdi:BDI_1900 sugar kinase; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; PFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal YP_004320424.1 PFAM: methionine synthase, vitamin-B12 independent; Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal; TIGRFAM: Cobalamin-independent methionine synthase; HAMAP: Cobalamin-independent methionine synthase; KEGG: fjo:Fjoh_1519 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase YP_004320425.1 PFAM: Regulator of K+ conductance, C-terminal; KEGG: mta:Moth_2066 TrkA-C YP_004320426.1 PFAM: Cation/H+ exchanger; KEGG: cce:Ccel_3108 sodium/hydrogen exchanger YP_004320427.1 PFAM: MgtC/SapB transporter; KEGG: bmj:BMULJ_05230 Mg2+ transporter-C (MgtC) family protein YP_004320428.1 PFAM: Domain of unknown function DUF59; KEGG: bfs:BF0426 hypothetical protein YP_004320429.1 KEGG: phe:Phep_0509 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter-like YP_004320430.1 PFAM: lytic transglycosylase-like, catalytic; KEGG: phe:Phep_0499 lytic transglycosylase catalytic YP_004320431.1 TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: phe:Phep_0498 RNA-binding S4 domain protein; SMART: RNA-binding S4