-- dump date 20120504_162042 -- class Genbank::CDS -- table cds_note -- id note YP_004246041.1 SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; TIGRFAM: Chromosomal replication control, initiator DnaA; KEGG: ssm:Spirs_0001 chromosomal replication initiator protein DnaA; HAMAP: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal YP_004246042.1 SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: ssm:Spirs_0003 DNA polymerase III beta subunit; PFAM: DNA polymerase III beta chain, central; DNA polymerase III beta chain, N-terminal; DNA polymerase III beta chain, C-terminal YP_004246043.1 KEGG: ssm:Spirs_0004 DNA replication and repair protein RecF; TIGRFAM: DNA-binding, RecF; PFAM: RecF/RecN/SMC YP_004246044.1 PFAM: protein of unknown function DUF721/UPF0232; KEGG: ssm:Spirs_0005 protein of unknown function DUF721 YP_004246045.1 TIGRFAM: ribosomal protein L34; HAMAP: ribosomal protein L34; KEGG: ssm:Spirs_0006 ribosomal protein L34; PFAM: ribosomal protein L34 YP_004246046.1 PFAM: ribonuclease P; manually curated; TIGRFAM: ribonuclease P; KEGG: ssm:Spirs_0007 ribonuclease P protein component; HAMAP: ribonuclease P YP_004246047.1 TIGRFAM: membrane insertion protein, OxaA/YidC; membrane insertion protein, OxaA/YidC, bacterial; HAMAP: membrane insertion protein, OxaA/YidC, bacterial; KEGG: ssm:Spirs_0008 membrane protein insertase, YidC/Oxa1 family; PFAM: membrane insertion protein, OxaA/YidC YP_004246048.1 KEGG: ssm:Spirs_0009 single-stranded nucleic acid binding R3H domain protein; PFAM: Single-stranded nucleic acid binding R3H; SMART: Single-stranded nucleic acid binding R3H YP_004246049.1 KEGG: cth:Cthe_0646 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: ribonucleoside-triphosphate reductase, anaerobic; PFAM: ATP-cone YP_004246050.1 KEGG: cth:Cthe_0647 anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: ribonucleoside-triphosphate reductase, anaerobic-like; PFAM: radical SAM YP_004246051.1 PFAM: S-adenosylmethionine synthetase, C-terminal; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal; TIGRFAM: S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthetase; KEGG: ssm:Spirs_0010 S-adenosylmethionine synthetase YP_004246052.1 KEGG: gym:GYMC10_4044 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004246053.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ssm:Spirs_2344 major facilitator superfamily MFS_1 YP_004246054.1 PFAM: carbohydrate/purine kinase; KEGG: ssm:Spirs_4279 PfkB domain protein YP_004246055.1 PFAM: Enolpyruvate transferase domain; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: sta:STHERM_c00510 hypothetical protein YP_004246056.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dhd:Dhaf_0502 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004246057.1 KEGG: ckr:CKR_1490 hypothetical protein; PFAM: Ferrous iron transporter Feosubunit alpha; SMART: Ferrous iron transporter Feosubunit alpha YP_004246058.1 KEGG: mbu:Mbur_0777 hypothetical protein; PFAM: Ferrous iron transporter Feosubunit alpha; SMART: Ferrous iron transporter Feosubunit alpha YP_004246059.1 KEGG: drm:Dred_2723 ferrous iron transporter B; TIGRFAM: Ferrous iron transporter B; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transporter B, N-terminal; nucleoside recognition; Ferrous iron transporter B, C-terminal YP_004246060.1 KEGG: dba:Dbac_1042 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; SMART: ATPase, AAA+ type, core YP_004246061.1 KEGG: ssm:Spirs_0151 protein of unknown function DUF558; TIGRFAM: ribosomal RNA small subunit methyltransferase E; PFAM: ribosomal RNA small subunit methyltransferase E YP_004246062.1 TIGRFAM: peptidase S41A, C-terminal peptidase; PFAM: peptidase S41; PDZ/DHR/GLGF; KEGG: ssm:Spirs_0153 carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF YP_004246063.1 PFAM: prolipoprotein diacylglyceryl transferase; manually curated; TIGRFAM: prolipoprotein diacylglyceryl transferase; KEGG: ssm:Spirs_0157 prolipoprotein diacylglyceryl transferase; HAMAP: prolipoprotein diacylglyceryl transferase YP_004246064.1 KEGG: pdi:BDI_2283 aminopeptidase; PFAM: peptidase M24, structural domain; Creatinase YP_004246065.1 TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: ssm:Spirs_0213 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; PFAM: BPG-independent PGAM, N-terminal; metalloenzyme YP_004246066.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: ttr:Tter_1081 aldo/keto reductase YP_004246067.1 KEGG: ssm:Spirs_0258 hypothetical protein YP_004246068.1 KEGG: ssm:Spirs_0263 transporter YP_004246069.1 KEGG: ssm:Spirs_0266 alpha amylase catalytic region; PFAM: glycosyl hydrolase, family 13, catalytic domain; SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain YP_004246070.1 PFAM: peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; HAMAP: peptidyl-tRNA hydrolase; KEGG: ssm:Spirs_0270 peptidyl-tRNA hydrolase YP_004246071.1 KEGG: pag:PLES_12181 hypothetical protein YP_004246072.1 PFAM: Domain of unknown function DUF39; KEGG: tle:Tlet_1363 hypothetical protein YP_004246073.1 KEGG: drt:Dret_1113 NIL domain protein; PFAM: NIL domain; 4Fe-4S binding domain; SMART: NIL domain YP_004246074.1 TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; KEGG: nhl:Nhal_2538 methionine synthase; PFAM: Homocysteine S-methyltransferase; Pterin-binding; methionine synthase, cobalamin (vitamin B12)-binding module, cap; cobalamin (vitamin B12)-binding; Vitamin B12-dependent methionine synthase, activation domain YP_004246075.1 PFAM: HhH-GPD domain; KEGG: sat:SYN_00287 endonuclease III N; SMART: HhH-GPD domain YP_004246076.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2; KEGG: ssm:Spirs_0275 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; prephenate dehydratase; Amino acid-binding ACT YP_004246077.1 KEGG: sta:STHERM_c03850 GTP-binding protein YP_004246079.1 KEGG: pmz:HMPREF0659_A5807 L-serine ammonia-lyase; PFAM: serine dehydratase-like, subunit alpha; serine dehydratase beta chain YP_004246081.1 TIGRFAM: leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; KEGG: ssm:Spirs_0283 leucyl-tRNA synthetase YP_004246082.1 KEGG: ssm:Spirs_0284 protein of unknown function DUF21; PFAM: Domain of unknown function DUF21; cystathionine beta-synthase, core; transporter-associated domain; SMART: cystathionine beta-synthase, core YP_004246083.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: amr:AM1_B0041 acetyltransferase YP_004246084.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: cbl:CLK_0432 acetyltransferase YP_004246085.1 KEGG: nde:NIDE4350 magnesium transporter CorA; TIGRFAM: Magnesium/cobalt transporter CorA; PFAM: Mg2+ transporter protein, CorA-like YP_004246086.1 PFAM: YhhN-like; KEGG: sgr:SGR_5669 hypothetical protein YP_004246087.1 KEGG: tde:TDE2245 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain YP_004246088.1 PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; KEGG: ssm:Spirs_4003 DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A/C-terminal YP_004246089.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: bvu:BVU_0383 ribosomal large subunit pseudouridine synthase D YP_004246090.1 KEGG: gym:GYMC10_2999 Asp/Glu/hydantoin racemase YP_004246091.1 KEGG: cbt:CLH_3107 transketolase, thiamine diphosphate binding domain; PFAM: transketolase, N-terminal YP_004246092.1 PFAM: transketolase, C-terminal; transketolase-like, pyrimidine-binding domain; KEGG: tjr:TherJR_2764 transketolase central region; SMART: transketolase-like, pyrimidine-binding domain YP_004246093.1 KEGG: rsk:RSKD131_4137 periplasmic substrate-binding protein; TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: extracellular solute-binding protein, family 7, bacteria YP_004246094.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: hel:HELO_1478 TRAP transporter small transmembrane protein YP_004246095.1 KEGG: csa:Csal_0756 TRAP dicarboxylate transporter-DctM subunit; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit YP_004246096.1 PFAM: transaldolase; KEGG: ahe:Arch_0043 transaldolase YP_004246097.1 PFAM: Cupin 2, conserved barrel; KEGG: ssm:Spirs_3968 cupin 2 conserved barrel domain protein YP_004246098.1 KEGG: cbe:Cbei_2927 GntR domain-containing protein; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004246099.1 PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; Signal transduction response regulator, receiver domain; KEGG: ssm:Spirs_3995 response regulator receiver protein YP_004246100.1 PFAM: glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; KEGG: ssm:Spirs_3994 glutamate dehydrogenase (NADP(+)); SMART: glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal YP_004246101.1 TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; KEGG: ssm:Spirs_3975 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit, C-terminal; ribonucleotide reductase large subunit, N-terminal YP_004246102.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ssm:Spirs_0339 major facilitator superfamily MFS_1 YP_004246103.1 SMART: pyruvate-flavodoxin oxidoreductase, EKR domain; TIGRFAM: pyruvate-flavodoxin oxidoreductase; KEGG: mta:Moth_0064 pyruvate:ferredoxin (flavodoxin) oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; pyruvate/ketoisovalerate oxidoreductase, catalytic domain; pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S binding domain YP_004246104.1 KEGG: hch:HCH_00329 hypothetical protein YP_004246106.1 KEGG: bbe:BBR47_06800 D-galactose ABC transporter substrate-binding protein precursor YP_004246107.1 PFAM: ABC transporter-like; KEGG: pjd:Pjdr2_4330 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004246108.1 PFAM: ABC transporter permease; KEGG: chd:Calhy_0116 inner-membrane translocator YP_004246109.1 KEGG: lsp:Bsph_1495 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase YP_004246110.1 KEGG: kol:Kole_0990 myo-inositol catabolism IolB domain protein YP_004246111.1 KEGG: bhy:BHWA1_02245 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004246112.1 KEGG: afn:Acfer_2015 TRAP dicarboxylate transporter DctM subunit; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit YP_004246113.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: efa:EF0430 TRAP dicarboxylate transporter DctQ subunit YP_004246114.1 KEGG: bpf:BpOF4_21499 ABC transporter periplasmic solute-binding protein; TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: extracellular solute-binding protein, family 7, bacteria YP_004246115.1 KEGG: gym:GYMC10_3890 periplasmic binding protein/LacI transcriptional regulator YP_004246116.1 KEGG: ccb:Clocel_3841 multi-sensor signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, internal region; HAMP linker domain; Cache; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain YP_004246117.1 KEGG: bbe:BBR47_06770 two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; HTH transcriptional regulator, AraC; SMART: Signal transduction response regulator, receiver domain; Helix-turn-helix, AraC type, DNA binding domain YP_004246118.1 KEGG: csh:Closa_0385 nitroreductase; manually curated; PFAM: nitroreductase-like YP_004246119.1 KEGG: lbf:LBF_0721 sugar phosphate permease; manually curated; PFAM: Major facilitator superfamily MFS-1 YP_004246120.1 PFAM: nitroreductase-like; KEGG: sta:STHERM_c19860 bacterioferritin comigratory protein/NADH dehydrogenase YP_004246121.1 PFAM: pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: dsy:DSY3640 hypothetical protein YP_004246122.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sta:STHERM_c04700 rubredoxin YP_004246123.1 KEGG: ssm:Spirs_0600 regulatory protein, DeoR YP_004246125.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; Rhodanese-like; SirA-like; KEGG: sta:STHERM_c15100 hypothetical protein; SMART: Rhodanese-like YP_004246126.1 KEGG: bvu:BVU_2423 transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004246127.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bcl:ABC4078 C4-dicarboxylate transporter permease small protein YP_004246128.1 KEGG: dat:HRM2_42860 DctM9; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit YP_004246129.1 PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; KEGG: str:Sterm_4054 oxidoreductase domain protein YP_004246130.1 PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; KEGG: gym:GYMC10_3207 oxidoreductase domain protein YP_004246131.1 PFAM: extracellular solute-binding protein, family 7, bacteria; KEGG: vei:Veis_3954 TRAP dicarboxylate transporter DctP subunit YP_004246132.1 KEGG: csh:Closa_1620 transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004246133.1 PFAM: Lipase, GDSL; KEGG: bln:Blon_0953 lipolytic enzyme, G-D-S-L family YP_004246134.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: ssm:Spirs_1776 endonuclease/exonuclease/phosphatase YP_004246135.1 KEGG: ssm:Spirs_1775 hypothetical protein YP_004246136.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_1774 binding-protein-dependent transport systems inner membrane component YP_004246137.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_1773 binding-protein-dependent transport systems inner membrane component YP_004246138.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ssm:Spirs_1772 extracellular solute-binding protein family 1 YP_004246139.1 KEGG: ssm:Spirs_1771 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004246140.1 KEGG: amr:AM1_0524 lipase/esterase YP_004246141.1 KEGG: tde:TDE0846 hypothetical protein YP_004246142.1 KEGG: cce:Ccel_1104 hypothetical protein YP_004246143.1 PFAM: transcription regulator PadR N-terminal-like; KEGG: dhd:Dhaf_2191 transcriptional regulator, PadR-like family YP_004246145.1 PFAM: CTP synthase, N-terminal; glutamine amidotransferase class-I, C-terminal; TIGRFAM: CTP synthase; HAMAP: CTP synthase; KEGG: CTP synthase YP_004246146.1 PFAM: ANTAR; KEGG: cth:Cthe_0203 response regulator receiver/ANTAR domain-containing protein YP_004246147.1 PFAM: glutamine synthetase, catalytic domain; glutamine synthetase, beta-Grasp; KEGG: cth:Cthe_0202 L-glutamine synthetase YP_004246148.1 PFAM: glutamate synthase, subunit alpha, C-terminal; KEGG: cth:Cthe_0201 glutamate synthase (NADPH) GltB3 subunit YP_004246149.1 KEGG: cth:Cthe_0200 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004246150.1 PFAM: 4Fe-4S binding domain; KEGG: cth:Cthe_0199 4Fe-4S ferredoxin iron-sulfur binding YP_004246151.1 KEGG: cth:Cthe_0198 glutamate synthase (NADPH) GltB2 subunit; PFAM: glutamate synthase, central-C; 4Fe-4S binding domain YP_004246152.1 PFAM: glutamine amidotransferase, class-II; KEGG: cth:Cthe_0197 glutamate synthase (NADPH) GltB1 subunit YP_004246153.1 PFAM: glutamine synthetase, catalytic domain; KEGG: cth:Cthe_0196 glutamine synthetase, catalytic region YP_004246154.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-4; KEGG: vex:VEA_002693 GGDEF family protein; SMART: Diguanylate cyclase, predicted YP_004246155.1 TIGRFAM: PAS; Diguanylate cyclase, predicted; PFAM: metal-dependent phosphohydrolase, HD subdomain; Diguanylate cyclase, predicted; PAS fold-3; Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region; KEGG: acl:ACL_0673 metal dependent phosphohydrolase; SMART: Diguanylate cyclase, predicted; PAS; PAC motif; metal-dependent phosphohydrolase, HD domain YP_004246156.1 KEGG: tde:TDE0009 hypothetical protein YP_004246158.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: cbe:Cbei_2690 GCN5-related N-acetyltransferase YP_004246159.1 KEGG: elm:ELI_2179 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: semialdehyde dehydrogenase, NAD-binding; semialdehyde dehydrogenase, dimerisation domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, type 1; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase, type 1; SMART: semialdehyde dehydrogenase, NAD-binding YP_004246160.1 PFAM: arginine biosynthesis protein ArgJ; TIGRFAM: arginine biosynthesis protein ArgJ; HAMAP: arginine biosynthesis protein ArgJ; KEGG: csh:Closa_3285 arginine biosynthesis bifunctional protein ArgJ YP_004246161.1 TIGRFAM: acetylglutamate kinase; KEGG: ipo:Ilyop_2589 N-acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_004246162.1 PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine/succinylornithine aminotransferase; HAMAP: acetylornithine/succinyldiaminopimelate aminotransferase; KEGG: elm:ELI_2182 hypothetical protein YP_004246163.1 TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: asparagine synthase (glutamine-hydrolyzing); PFAM: Asparagine synthase; glutamine amidotransferase, class-II YP_004246164.1 PFAM: Cadmium resistance transporter; KEGG: lcr:LCRIS_00180 cadmium resistance transporter YP_004246165.1 KEGG: swo:Swol_0283 hypothetical protein; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004246166.1 KEGG: swo:Swol_0285 hypothetical protein YP_004246167.1 SMART: HTH transcriptional regulator, LacI; KEGG: ssm:Spirs_0043 LacI family transcriptional regulator YP_004246168.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ppm:PPSC2_c4967 multiple sugar-binding transporter multiple sugar-binding protein YP_004246169.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: pjd:Pjdr2_0386 binding-protein-dependent transport systems inner membrane component YP_004246170.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: pjd:Pjdr2_0385 binding-protein-dependent transport systems inner membrane component YP_004246171.1 PFAM: glycoside hydrolase, family 31; KEGG: pjd:Pjdr2_1930 alpha-xylosidase YicI YP_004246172.1 KEGG: clo:HMPREF0868_0519 hypothetical protein YP_004246173.1 KEGG: pmo:Pmob_0980 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Fumarylacetoacetase, C-terminal-like; Domain of unknown function DUF2437 YP_004246174.1 KEGG: csh:Closa_2855 RNA methyltransferase, TrmA family; TIGRFAM: 23S rRNA methyltransferase/RumA; PFAM: (uracil-5)-methyltransferase; DNA methylase N-4/N-6 YP_004246175.1 PFAM: ATPase, AAA-4; KEGG: transcriptional regulator YP_004246176.1 KEGG: dae:Dtox_0414 addiction module antitoxin, RelB/DinJ family; TIGRFAM: RelB antitoxin; PFAM: RelB antitoxin YP_004246177.1 KEGG: dau:Daud_0750 plasmid stabilization system protein YP_004246178.1 manually curated; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: cbf:CLI_2225 PhzF family phenazine biosynthesis protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein YP_004246179.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rlt:Rleg2_0558 short chain dehydrogenase YP_004246180.1 KEGG: ccb:Clocel_0267 acetyltransferase YP_004246181.1 PFAM: beta-lactamase-related; KEGG: bmq:BMQ_1731 beta-lactamase YP_004246182.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bcy:Bcer98_3198 TetR family transcriptional regulator YP_004246183.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: bcl:ABC0258 peptide ABC transporter permease YP_004246184.1 PFAM: ABC transporter-like; KEGG: bcl:ABC0259 peptide ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004246185.1 KEGG: amt:Amet_1393 hypothetical protein YP_004246186.1 KEGG: cst:CLOST_2449 hypothetical protein YP_004246187.1 KEGG: eel:EUBELI_20017 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004246188.1 KEGG: ere:EUBREC_2355 hypothetical protein YP_004246189.1 PFAM: DSBA-like thioredoxin domain; KEGG: gur:Gura_1273 DsbA oxidoreductase YP_004246190.1 KEGG: clo:HMPREF0868_0519 hypothetical protein YP_004246191.1 PFAM: protein of unknown function DUF1905; KEGG: sub:SUB0941 hypothetical protein YP_004246192.1 PFAM: protein of unknown function DUF1801; KEGG: ccb:Clocel_0157 hypothetical protein YP_004246193.1 PFAM: methyltransferase type 11; KEGG: mpi:Mpet_0248 type 11 methyltransferase YP_004246194.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: dsy:DSY2844 hypothetical protein YP_004246195.1 PFAM: peptidase M23; KEGG: nth:Nther_0268 peptidase M23 YP_004246196.1 KEGG: gym:GYMC10_4792 hypothetical protein YP_004246197.1 PFAM: Major facilitator superfamily MFS-1; KEGG: elm:ELI_1208 macrolide-efflux protein YP_004246198.1 PFAM: peptidase M20; peptidase M20, dimerisation; KEGG: mta:Moth_0710 peptidase YP_004246199.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; Uncharacterised protein family HDIG; PFAM: Diguanylate cyclase, predicted; PAS fold-3; CHASE3; PAS fold; metal-dependent phosphohydrolase, HD subdomain; KEGG: csh:Closa_3879 diguanylate cyclase and metal dependent phosphohydrolase; SMART: Diguanylate cyclase, predicted; PAC motif; PAS; metal-dependent phosphohydrolase, HD domain YP_004246200.1 KEGG: mmw:Mmwyl1_1857 periplasmic-binding protein/LacI transcriptional regulator YP_004246201.1 KEGG: mmh:Mmah_0555 3-Cys thioredoxin peroxidase; PFAM: Alkyl hydroperoxide reductase subunit C/ thiol specific antioxidant; peroxiredoxin, C-terminal YP_004246202.1 PFAM: 4Fe-4S binding domain; KEGG: hor:Hore_08480 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_004246203.1 KEGG: mif:Metin_0676 cupin 2 conserved barrel domain protein YP_004246204.1 KEGG: Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; SMART: HTH transcriptional regulator, Crp YP_004246206.1 KEGG: cdf:CD2476 hypothetical protein YP_004246207.1 KEGG: ckr:CKR_0931 hypothetical protein YP_004246209.1 KEGG: bfs:BF3383 hypothetical protein YP_004246210.1 KEGG: zpr:ZPR_4496 membrane protein YP_004246211.1 KEGG: ssm:Spirs_1217 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain YP_004246212.1 KEGG: ote:Oter_0043 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain YP_004246213.1 KEGG: ssm:Spirs_2574 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004246214.1 KEGG: pen:PSEEN1035 ornithine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal YP_004246215.1 TIGRFAM: 2-hydroxy-3-oxopropionate reductase; KEGG: ssm:Spirs_0509 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004246216.1 KEGG: ssm:Spirs_0510 dihydrodipicolinate synthetase; HAMAP: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_004246217.1 KEGG: lbu:LBUL_1400 ATPase YP_004246218.1 KEGG: ssm:Spirs_0508 IclR family transcriptional regulator; PFAM: transcription regulator IclR, C-terminal; transcription regulator IclR, N-terminal; SMART: transcription regulator IclR, N-terminal YP_004246219.1 PFAM: mandelate racemase/muconate lactonizing enzyme, C-terminal; mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: afn:Acfer_0071 glucarate dehydratase; SMART: mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004246220.1 PFAM: Auxin efflux carrier; KEGG: afn:Acfer_1739 hypothetical protein YP_004246221.1 KEGG: ant:Arnit_1029 family 3 extracellular solute-binding protein YP_004246222.1 KEGG: ant:Arnit_1030 hypothetical protein YP_004246223.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: ant:Arnit_1031 hypothetical protein YP_004246224.1 SMART: SAF domain; TIGRFAM: galactarate dehydratase; KEGG: afn:Acfer_0082 galactarate dehydratase; PFAM: D-galactarate dehydratase/altronate hydrolase, C-terminal; SAF domain YP_004246225.1 KEGG: ssm:Spirs_2204 hypothetical protein YP_004246227.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: phe:Phep_0360 N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_004246228.1 PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: phe:Phep_0774 glucosamine-6-phosphate deaminase YP_004246229.1 KEGG: tna:CTN_0237 C4-dicarboxylate-binding protein; TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: extracellular solute-binding protein, family 7, bacteria YP_004246230.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: aco:Amico_1306 tripartite ATP-independent periplasmic transporter DctQ component YP_004246231.1 KEGG: has:Halsa_0895 TRAP dicarboxylate transporter DctM subunit; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit YP_004246232.1 KEGG: ere:EUBREC_1950 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004246233.1 KEGG: pen:PSEEN4650 hypothetical protein; PFAM: Helix-turn-helix type 3; protein of unknown function DUF955; SMART: Helix-turn-helix type 3 YP_004246234.1 PFAM: ABC transporter-like; transport-associated OB, type 2; KEGG: ssm:Spirs_3958 ABC transporter; SMART: ATPase, AAA+ type, core YP_004246235.1 KEGG: ssm:Spirs_3954 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004246236.1 KEGG: ssm:Spirs_3955 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004246237.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: aco:Amico_0910 extracellular solute-binding protein family 1 YP_004246238.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: aco:Amico_0909 binding-protein-dependent transport systems inner membrane component YP_004246239.1 PFAM: ABC transporter-like; transport-associated OB, type 2; KEGG: aco:Amico_0908 ABC transporter; SMART: ATPase, AAA+ type, core YP_004246240.1 KEGG: adg:Adeg_1768 hypothetical protein YP_004246241.1 KEGG: bfs:BF4074 hypothetical protein YP_004246242.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ppm:PPSC2_c3438 ABC transporter permease YP_004246243.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: gym:GYMC10_2438 binding-protein-dependent transport systems inner membrane component YP_004246244.1 KEGG: cce:Ccel_0203 glycoside hydrolase family 3 domain protein; PFAM: glycoside hydrolase, family 3, C-terminal; glycoside hydrolase, family 3, N-terminal YP_004246245.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: sta:STHERM_c04300 extracellular solute-binding protein YP_004246246.1 KEGG: csh:Closa_0993 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004246247.1 PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; KEGG: ppm:PPSC2_c0330 myo-inositol dehydrogenase idha - sinorhizobium meliloti YP_004246248.1 KEGG: cow:Calow_2082 hypothetical protein YP_004246249.1 KEGG: fsu:Fisuc_2783 hypothetical protein YP_004246250.1 PFAM: Domain of unknown function DUF303, acetylesterase KEGG: ccb:Clocel_2697 sialate O-acetylesterase YP_004246251.1 KEGG: bln:Blon_1431 hypothetical protein YP_004246252.1 KEGG: aar:Acear_0886 hypothetical protein YP_004246253.1 KEGG: aco:Amico_0150 SirA family protein YP_004246254.1 KEGG: vpr:Vpar_0344 hypothetical protein YP_004246255.1 TIGRFAM: Selenide water dikinase; HAMAP: Selenide, water dikinase, class I; KEGG: cbk:CLL_A0646 selenide, water dikinase; PFAM: AIR synthase-related protein; AIR synthase-related protein, C-terminal YP_004246256.1 KEGG: blj:BLD_0843 AAA+ superfamily ATPase YP_004246257.1 KEGG: msi:Msm_1197 ATPase YP_004246258.1 PFAM: ATPase, AAA-4; KEGG: fri:FraEuI1c_2294 transcriptional regulator YP_004246259.1 PFAM: transglutaminase-like; KEGG: cpy:Cphy_0168 transglutaminase domain-containing protein YP_004246260.1 KEGG: ote:Oter_3896 shikimate 5-dehydrogenase; HAMAP: shikimate, quinate/shikimate dehydrogenase; PFAM: shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_004246261.1 PFAM: transcription antitermination protein, NusG, N-terminal; KEGG: rma:Rmag_0816 transcription antitermination protein NusG YP_004246262.1 PFAM: polysaccharide biosynthesis protein CapD-like; KEGG: cdf:CD2769 capsular polysaccharide biosynthesis protein YP_004246263.1 KEGG: afn:Acfer_0752 hypothetical protein YP_004246264.1 KEGG: lfe:LAF_0101 hypothetical protein YP_004246265.1 KEGG: hypothetical protein YP_004246266.1 PFAM: glycoside hydrolase, family 20, catalytic core; KEGG: ssm:Spirs_2120 beta-N-acetylhexosaminidase YP_004246267.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_2121 binding-protein-dependent transport systems inner membrane component YP_004246268.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_2122 binding-protein-dependent transport systems inner membrane component YP_004246269.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ssm:Spirs_2123 extracellular solute-binding protein family 1 YP_004246270.1 PFAM: ROK; KEGG: ssm:Spirs_2124 ROK family protein YP_004246271.1 KEGG: gca:Galf_0892 hypothetical protein YP_004246272.1 KEGG: alv:Alvin_0247 SMC domain-containing protein YP_004246273.1 KEGG: shi:Shel_27120 hypothetical protein YP_004246274.1 KEGG: acl:ACL_1072 addiction module antidote protein; PFAM: Helix-turn-helix type 3; protein of unknown function DUF955; SMART: Helix-turn-helix type 3 YP_004246275.1 KEGG: lbr:LVIS_A05 plasmid maintenance system killer protein YP_004246276.1 PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: tte:TTE0216 N-acetylglucosamine kinase YP_004246277.1 TIGRFAM: N-acetylmuramic acid 6-phosphate etherase; HAMAP: N-acetylmuramic acid 6-phosphate etherase; KEGG: ssm:Spirs_1152 glucokinase regulatory-like protein; PFAM: Sugar isomerase (SIS) YP_004246278.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: binding-protein-dependent transporters inner membrane component YP_004246279.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: kvu:EIO_2485 probable sugar ABC transporter permease YP_004246280.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: kvu:EIO_2486 extracellular solute-binding protein YP_004246281.1 PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: cac:CA_C0191 RpiR family transcriptional regulator YP_004246282.1 KEGG: pru:PRU_1109 hypothetical protein YP_004246283.1 PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: sti:Sthe_2849 LmbE family protein YP_004246285.1 KEGG: pmo:Pmob_1291 regulatory protein MarR; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004246286.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bce:BC5273 UDP-bacillosamine synthetase YP_004246287.1 PFAM: Bacterial sugar transferase; KEGG: bha:BH3716 galactosyltransferase YP_004246288.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: elm:ELI_1968 NAD-dependent epimerase/dehydratase YP_004246289.1 PFAM: glycosyl transferase, group 1; KEGG: glycosyl transferase group 1 YP_004246290.1 KEGG: cpy:Cphy_3504 polysaccharide biosynthesis protein CapD; PFAM: polysaccharide biosynthesis protein CapD-like; polysaccharide biosynthesis C-terminal YP_004246291.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: drm:Dred_3032 NAD-dependent epimerase/dehydratase YP_004246292.1 TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: elm:ELI_4557 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_004246293.1 PFAM: glycosyl transferase, group 1; KEGG: sat:SYN_01141 glycosyltransferase YP_004246294.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165; KEGG: mac:MA2406 transposase YP_004246295.1 TIGRFAM: nucleotide sugar dehydrogenase; KEGG: elm:ELI_2699 UDP-glucose/GDP-mannose dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_004246296.1 KEGG: bpb:bpr_I2537 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004246297.1 PFAM: glycosyl transferase, family 2; KEGG: cff:CFF8240_0898 sugar transferase YP_004246299.1 PFAM: LicD-like; KEGG: snp:SPAP_1298 LPS biosynthesis protein YP_004246300.1 PFAM: glycosyl transferase, family 2; KEGG: cbe:Cbei_4632 glycosyl transferase YP_004246301.1 PFAM: polysaccharide pyruvyl transferase; KEGG: bae:BATR1942_15065 polysaccharide pyruvyl transferase YP_004246302.1 PFAM: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal; 4Fe-4S binding domain; KEGG: dat:HRM2_25300 predicted F420 dehydrogenase subunit beta YP_004246303.1 PFAM: polysaccharide biosynthesis protein; KEGG: esi:Exig_2626 polysaccharide biosynthesis protein YP_004246304.1 KEGG: tde:TDE1413 cytidylyltransferase/phosphoenolpyruvate phosphomutase, TIGRFAM: phosphoenolpyruvate phosphomutase, core; Cytidyltransferase-related; PFAM: Cytidylyltransferase YP_004246305.1 TIGRFAM: phosphonopyruvate decarboxylase; KEGG: tde:TDE1414 phosphonopyruvate decarboxylase, PFAM: thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004246306.1 TIGRFAM: 2-aminoethylphosphonate aminotransferase; KEGG: tde:TDE1415 nucleotidyl transferase/aminotransferase, class V; PFAM: Aminotransferase, class V/cysteine desulfurase YP_004246307.1 KEGG: kol:Kole_1506 IstB domain protein ATP-binding protein YP_004246308.1 PFAM: Integrase, catalytic core; KEGG: integrase catalytic region YP_004246309.1 KEGG: lso:CKC_04150 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004246310.1 KEGG: swo:Swol_2214 hypothetical protein YP_004246311.1 KEGG: noc:Noc_0409 hypothetical protein YP_004246315.1 KEGG: bpb:bpr_I1923 DNA-damage-inducible protein YP_004246316.1 KEGG: hypothetical protein YP_004246318.1 PFAM: protein of unknown function DUF927; KEGG: ccb:Clocel_0839 bifunctional DNA primase/polymerase YP_004246322.1 KEGG: cth:Cthe_1640 hypothetical protein YP_004246323.1 KEGG: afn:Acfer_1078 hypothetical protein YP_004246324.1 KEGG: cth:Cthe_1635 hypothetical protein YP_004246325.1 PFAM: AIG2-like; KEGG: hmo:HM1_0612 hypothetical protein YP_004246326.1 KEGG: amt:Amet_4037 hypothetical protein YP_004246327.1 KEGG: det:DET1089 virulence-related protein YP_004246328.1 KEGG: bse:Bsel_2989 resolvase domain-containing protein; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal YP_004246329.1 KEGG: dae:Dtox_1526 resolvase domain protein; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal YP_004246330.1 KEGG: csh:Closa_2762 resolvase domain protein; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal YP_004246333.1 KEGG: hhe:HH0277 hypothetical protein YP_004246334.1 PFAM: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal; Coenzyme F420 hydrogenase/dehydrogenase subunit beta, N-terminal; KEGG: maq:Maqu_2619 coenzyme F420 hydrogenase/dehydrogenase beta subunit YP_004246335.1 KEGG: cdf:CD2041 regulatory protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004246336.1 KEGG: dsy:DSY3282 hypothetical protein YP_004246338.1 KEGG: dsy:DSY3281 hypothetical protein; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal YP_004246340.1 KEGG: csc:Csac_0072 ATPase YP_004246341.1 PFAM: Amine oxidase; KEGG: fno:Fnod_0544 amine oxidase YP_004246343.1 KEGG: cno:NT01CX_2348 sensory box/GGDEF family protein; PFAM: transcription regulator LuxR, C-terminal; SMART: transcription regulator LuxR, C-terminal YP_004246344.1 KEGG: swo:Swol_2214 hypothetical protein YP_004246345.1 KEGG: helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004246346.1 KEGG: dhd:Dhaf_0653 hypothetical protein YP_004246347.1 KEGG: dhd:Dhaf_0652 hypothetical protein YP_004246348.1 KEGG: ssm:Spirs_2205 hypothetical protein YP_004246349.1 KEGG: tle:Tlet_0191 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR YP_004246350.1 KEGG: sro:Sros_5559 ABC transporter periplasmic substrate-binding protein YP_004246351.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: kfl:Kfla_3851 binding-protein-dependent transport systems inner membrane component YP_004246352.1 PFAM: ABC transporter-like; KEGG: kfl:Kfla_3852 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004246353.1 PFAM: inositol monophosphatase; KEGG: mca:MCA2609 inositol monophosphatase family protein YP_004246354.1 KEGG: fnu:FN1553 transporter YP_004246355.1 KEGG: fnu:FN1552 hypothetical protein YP_004246356.1 PFAM: TfoX, C-terminal; KEGG: mla:Mlab_0302 hypothetical protein YP_004246357.1 KEGG: cph:Cpha266_1224 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1814 YP_004246358.1 KEGG: gsu:GSU1367 hypothetical protein YP_004246359.1 PFAM: carbohydrate/purine kinase; KEGG: ssm:Spirs_2963 PfkB domain protein YP_004246360.1 KEGG: bbe:BBR47_56360 mannitol-1-phosphate 5-dehydrogenase; PFAM: mannitol dehydrogenase, C-terminal; mannitol dehydrogenase, N-terminal YP_004246361.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ssm:Spirs_2702 extracellular solute-binding protein family 1 YP_004246362.1 KEGG: ssm:Spirs_2703 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004246363.1 PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: ssm:Spirs_2704 integral membrane sensor signal transduction histidine kinase YP_004246364.1 PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: ssm:Spirs_2705 periplasmic binding protein/LacI transcriptional regulator YP_004246365.1 PFAM: ABC transporter-like; KEGG: ssm:Spirs_2706 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004246366.1 PFAM: ABC transporter permease; KEGG: ssm:Spirs_2707 inner-membrane translocator YP_004246367.1 PFAM: protein of unknown function DUF1498; KEGG: dde:Dde_2521 hypothetical protein YP_004246368.1 KEGG: cbc:CbuK_1686 ATPase YP_004246369.1 KEGG: cob:COB47_0557 integral membrane sensor signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, internal region; HAMP linker domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain YP_004246370.1 KEGG: chd:Calhy_2052 two component transcriptional regulator, AraC family; PFAM: Signal transduction response regulator, receiver domain; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; Signal transduction response regulator, receiver domain YP_004246371.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: mrb:Mrub_0284 extracellular solute-binding protein family 1 YP_004246372.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: kfl:Kfla_4816 binding-protein-dependent transport systems inner membrane component YP_004246373.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: tle:Tlet_1115 binding-protein-dependent transport systems inner membrane component YP_004246374.1 PFAM: aldehyde-lyase domain; KEGG: cdl:CDR20291_1924 hypothetical protein YP_004246375.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: hau:Haur_2432 aldo/keto reductase YP_004246376.1 KEGG: tde:TDE0496 DNA-binding protein, TIGRFAM: transcription regulator, HipB-like; PFAM: Helix-turn-helix type 3 YP_004246377.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: mrb:Mrub_0279 extracellular solute-binding protein family 1 YP_004246378.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: mrb:Mrub_0280 binding-protein-dependent transport systems inner membrane component YP_004246379.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: mrb:Mrub_0281 binding-protein-dependent transport systems inner membrane component YP_004246380.1 KEGG: mes:Meso_1956 mandelate racemase/muconate lactonizing-like protein; PFAM: mandelate racemase/muconate lactonizing enzyme, C-terminal; mandelate racemase/muconate lactonizing enzyme, N-terminal; SMART: mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004246381.1 KEGG: afn:Acfer_2012 transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004246382.1 PFAM: alcohol dehydrogenase GroES-like; alcohol dehydrogenase, C-terminal; KEGG: amt:Amet_0554 alcohol dehydrogenase; SMART: polyketide synthase, enoylreductase YP_004246383.1 PFAM: glycosyl hydrolase, family 88; KEGG: fjo:Fjoh_4251 glycosy hydrolase family protein YP_004246384.1 KEGG: bvu:BVU_1767 glycoside hydrolase family protein; manually curated; PFAM: glycoside hydrolase, family 28 YP_004246385.1 KEGG: cow:Calow_2100 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain YP_004246386.1 KEGG: cow:Calow_2101 two component transcriptional regulator, AraC family; PFAM: Signal transduction response regulator, receiver domain; HTH transcriptional regulator, AraC; SMART: Signal transduction response regulator, receiver domain; Helix-turn-helix, AraC type, DNA binding domain YP_004246387.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: chd:Calhy_0140 extracellular solute-binding protein family 1 YP_004246388.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ckn:Calkro_0159 binding-protein-dependent transport systems inner membrane component YP_004246389.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ckn:Calkro_0160 binding-protein-dependent transport systems inner membrane component YP_004246390.1 PFAM: Sulfatase; KEGG: sus:acid_7475 arylsulfatase YP_004246391.1 PFAM: Amino acid permease domain; KEGG: tde:TDE0074 amino acid permease family protein YP_004246392.1 KEGG: ere:EUBREC_1939 bifunctional riboflavin kinase/FMN adenylyltransferase; PFAM: riboflavin kinase; SMART: riboflavin kinase YP_004246393.1 KEGG: ppm:PPSC2_c0917 protein YP_004246394.1 PFAM: polysaccharide biosynthesis protein CapD-like; KEGG: saf:SULAZ_0357 polysaccharide biosynthesis protein CapD YP_004246395.1 PFAM: aldehyde-lyase domain; KEGG: elm:ELI_1798 HpcH/HpaI aldolase/citrate lyase family protein YP_004246396.1 KEGG: elm:ELI_1799 pyridoxal-dependent decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal YP_004246397.1 KEGG: elm:ELI_1800 pilin glycosylation protein PglB; PFAM: Bacterial sugar transferase YP_004246398.1 TIGRFAM: Branched-chain amino acid aminotransferase I; KEGG: elm:ELI_1801 branched-chain-amino-acid transaminase; PFAM: Aminotransferase, class IV YP_004246399.1 PFAM: glycosyl transferase, family 2; KEGG: glycosyl transferase family 2 YP_004246401.1 KEGG: hypothetical protein YP_004246402.1 KEGG: pau:PA14_23400 hypothetical protein YP_004246404.1 KEGG: shi:Shel_27120 hypothetical protein YP_004246405.1 KEGG: aba:acid345_3309 O-antigen and teichoic acid export protein YP_004246406.1 PFAM: Bacterial alpha-L-rhamnosidase; KEGG: phe:Phep_3974 alpha-L-rhamnosidase YP_004246407.1 KEGG: hypothetical protein YP_004246408.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: bad:BAD_1506 nucleoside-diphosphate-sugar epimerases-like YP_004246409.1 KEGG: vsp:VS_0225 lipopolysaccharide biosynthesis O-acetyl transferase WbbJ YP_004246410.1 TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: cpf:CPF_0599 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase YP_004246411.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: cac:CA_C2332 dTDP-D-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004246412.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; KEGG: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related YP_004246413.1 PFAM: nucleotidyl transferase; KEGG: bpb:bpr_I2413 nucleotidyl transferase YP_004246414.1 KEGG: bpb:bpr_I2414 GHMP kinase family protein; PFAM: GHMP kinase; GHMP kinase, C-terminal YP_004246415.1 PFAM: glycosyl transferase, family 2; KEGG: bpb:bpr_I2421 glycosyl transferase GT2 family protein YP_004246416.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase, long form; KEGG: dae:Dtox_4130 glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase YP_004246417.1 TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: cpf:CPF_0599 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase YP_004246418.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: clj:CLJU_c05320 dTDP glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004246419.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; KEGG: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related YP_004246420.1 KEGG: bfr:BF2000 hypothetical protein YP_004246421.1 KEGG: bwe:BcerKBAB4_3392 hypothetical protein; TIGRFAM: Domain of unknown function DUF1792; PFAM: Domain of unknown function DUF1792 YP_004246422.1 KEGG: hypothetical protein YP_004246423.1 KEGG: bpb:bpr_I2516 polysaccharide biosynthesis protein YP_004246424.1 PFAM: glycosyl transferase, family 2; KEGG: shl:Shal_1491 glycosyl transferase YP_004246425.1 PFAM: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal; Coenzyme F420 hydrogenase/dehydrogenase subunit beta, N-terminal; KEGG: maq:Maqu_2619 coenzyme F420 hydrogenase/dehydrogenase beta subunit YP_004246426.1 KEGG: bhy:BHWA1_01695 hypothetical protein YP_004246427.1 PFAM: glycosyl transferase, group 1; KEGG: elm:ELI_2408 glycosyltransferase YP_004246428.1 KEGG: cow:Calow_2012 transcriptional regulator, LacI family; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004246429.1 PFAM: glycoside hydrolase, family 31; KEGG: lbr:LVIS_0137 alpha-glucosidase YP_004246430.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: tte:TTE1936 sugar permeases YP_004246431.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: tte:TTE1937 ABC-type sugar transporters, permeases YP_004246432.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: tte:TTE1938 sugar-binding periplasmic protein YP_004246433.1 PFAM: Microcystin LR degradation protein MlrC, N-terminal; Microcystin LR degradation protein MlrC, C-terminal; KEGG: ssm:Spirs_1401 microcystin LR degradation protein MlrC YP_004246434.1 KEGG: ssm:Spirs_1399 CutC family protein; HAMAP: copper homeostasis protein cutC; PFAM: CutC YP_004246435.1 KEGG: tde:TDE0480 alpha-L-fucosidase family protein; PFAM: glycoside hydrolase, family 29; SMART: glycoside hydrolase, family 29 YP_004246436.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: gym:GYMC10_3277 binding-protein-dependent transport systems inner membrane component YP_004246437.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: gym:GYMC10_1004 binding-protein-dependent transport systems inner membrane component YP_004246438.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: gym:GYMC10_2944 extracellular solute-binding protein family 1 YP_004246439.1 PFAM: Sulfatase; KEGG: sulfatase YP_004246440.1 KEGG: chd:Calhy_0723 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004246441.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: dba:Dbac_1842 extracellular solute-binding protein family 1 YP_004246442.1 PFAM: ABC transporter-like; transport-associated OB, type 2; KEGG: dba:Dbac_1841 ABC transporter; SMART: ATPase, AAA+ type, core YP_004246443.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: dba:Dbac_1840 binding-protein-dependent transport systems inner membrane component YP_004246444.1 PFAM: ATPase, AAA-4; KEGG: mmq:MmarC5_0620 transcriptional regulator YP_004246445.1 KEGG: tde:TDE1305 DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004246446.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: psl:Psta_2869 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004246447.1 KEGG: avn:Avin_27360 mannitol dehydrogenase; PFAM: mannitol dehydrogenase, C-terminal; mannitol dehydrogenase, N-terminal YP_004246448.1 KEGG: sta:STHERM_c20730 hypothetical protein YP_004246449.1 TIGRFAM: nucleotide sugar dehydrogenase; KEGG: dae:Dtox_4079 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal YP_004246450.1 KEGG: drm:Dred_3022 hypothetical protein YP_004246453.1 KEGG: aoe:Clos_0655 zinc transporter ZupT; HAMAP: Zinc transporter zupT; PFAM: Zinc/iron permease YP_004246454.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: ele:Elen_1059 GCN5-related N-acetyltransferase YP_004246455.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: rlg:Rleg_3430 extracellular solute-binding protein family 1 YP_004246456.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: gym:GYMC10_0290 binding-protein-dependent transport systems inner membrane component YP_004246457.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: rlg:Rleg_3428 binding-protein-dependent transport systems inner membrane component YP_004246458.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: cbe:Cbei_3523 hypothetical protein YP_004246459.1 KEGG: msv:Mesil_3390 hypothetical protein; PFAM: HTH transcriptional regulator, LacI; proteinase inhibitor I3, Kunitz legume; SMART: HTH transcriptional regulator, LacI YP_004246460.1 PFAM: Aminoglycoside 3-N-acetyltransferase; KEGG: gym:GYMC10_6252 aminoglycoside 3-N-acetyltransferase YP_004246461.1 manually curated; KEGG: bpo:BP951000_0920 N-acyl-D-glucosamine-2-epimerase; PFAM: N-acylglucosamine 2-epimerase YP_004246462.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: cbe:Cbei_4445 extracellular solute-binding protein YP_004246463.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: cbe:Cbei_4444 binding-protein-dependent transport systems inner membrane component YP_004246464.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: cpe:CPE0373 suger ABC transporter YP_004246465.1 KEGG: cbe:Cbei_4359 glycoside hydrolase family protein; PFAM: glycoside hydrolase, family 4 YP_004246466.1 KEGG: AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004246467.1 PFAM: Aminoglycoside phosphotransferase; KEGG: cpf:CPF_1410 MdsC protein YP_004246468.1 KEGG: ttm:Tthe_1918 transcriptional regulator, LacI family; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004246469.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: oan:Oant_3895 extracellular solute-binding protein YP_004246470.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ttm:Tthe_2655 binding-protein-dependent transport systems inner membrane component YP_004246471.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: dhd:Dhaf_2632 binding-protein-dependent transport systems inner membrane component YP_004246472.1 PFAM: Sulfatase; KEGG: has:Halsa_0089 sulfatase YP_004246474.1 KEGG: shi:Shel_27120 hypothetical protein YP_004246475.1 PFAM: Chromate transporter; KEGG: eel:EUBELI_20041 chromate transporter YP_004246476.1 PFAM: Chromate transporter; KEGG: csh:Closa_0917 chromate transporter YP_004246477.1 KEGG: hoh:Hoch_4802 hypothetical protein YP_004246478.1 KEGG: afn:Acfer_0736 abortive infection protein YP_004246479.1 KEGG: csh:Closa_1628 amidohydrolase; PFAM: Amidohydrolase 1 YP_004246480.1 PFAM: Basic membrane lipoprotein; KEGG: csh:Closa_1630 basic membrane lipoprotein YP_004246481.1 PFAM: ABC transporter-like; KEGG: csh:Closa_1631 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004246482.1 PFAM: ABC transporter permease; KEGG: csh:Closa_1632 inner-membrane translocator YP_004246483.1 PFAM: ABC transporter permease; KEGG: csh:Closa_1633 inner-membrane translocator YP_004246484.1 KEGG: csh:Closa_1629 transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004246485.1 KEGG: mac:MA1940 hypothetical protein YP_004246486.1 PFAM: protein of unknown function, DUF1537; KEGG: yen:YE2503 hypothetical protein YP_004246487.1 PFAM: class II aldolase/adducin, N-terminal; KEGG: mmw:Mmwyl1_2551 aldolase YP_004246488.1 KEGG: bpb:bpr_I2267 mannose-6-phosphate isomerase/mannose-1-phosphate guanylyl transferase; PFAM: nucleotidyl transferase; Cupin 2, conserved barrel YP_004246489.1 PFAM: protein of unknown function DUF955; KEGG: ckl:CKL_1751 hypothetical protein YP_004246490.1 KEGG: ckr:CKR_1623 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004246492.1 KEGG: ere:EUBREC_2155 hypothetical protein YP_004246493.1 PFAM: PHP, C-terminal; KEGG: bpb:bpr_I0127 PHP domain-containing protein YP_004246494.1 HAMAP: Uncharacterised protein family, TER reductase; KEGG: sta:STHERM_c16300 trans-2-enoyl-CoA reductase; PFAM: Uncharacterised protein family, TER reductase YP_004246495.1 PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: sta:STHERM_c08550 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YP_004246496.1 SMART: polyketide synthase, beta-ketoacyl synthase domain; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; KEGG: sta:STHERM_c21530 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase, N-terminal; beta-ketoacyl synthase, C-terminal YP_004246497.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: ssm:Spirs_2299 3-oxoacyl-(acyl-carrier-protein) reductase; SMART: polyketide synthase/Fatty acid synthase, KR YP_004246498.1 KEGG: sta:STHERM_c21550 hypothetical protein; SMART: polyketide synthase, acyl transferase domain YP_004246499.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: beta-ketoacyl-acyl carrier protein synthase III (FabH); HAMAP: beta-ketoacyl-acyl carrier protein synthase III (FabH); KEGG: ssm:Spirs_2297 3-oxoacyl-(acyl-carrier-protein) synthase III YP_004246500.1 KEGG: nam:NAMH_0057 acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: acetyl-CoA biotin carboxyl carrier; PFAM: Biotin/lipoyl attachment YP_004246501.1 PFAM: carbamoyl-phosphate synthetase, large subunit, ATP-binding; carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; KEGG: sta:STHERM_c08570 pyruvate carboxylase subunit A; SMART: Biotin carboxylase, C-terminal YP_004246502.1 TIGRFAM: acetyl-CoA carboxylase carboxyl transferase, subunit beta; KEGG: tde:TDE0590 acetyl-CoA carboxylase, carboxyl transferase, subunit beta; PFAM: carboxyl transferase YP_004246503.1 PFAM: acetyl-CoA carboxylase, subunit alpha; TIGRFAM: acetyl-CoA carboxylase, subunit alpha; HAMAP: acetyl-CoA carboxylase, alpha subunit; KEGG: tde:TDE0589 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit YP_004246504.1 KEGG: amt:Amet_1111 MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein YP_004246505.1 KEGG: cth:Cthe_1449 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004246506.1 KEGG: cpb:Cphamn1_2546 hypothetical protein YP_004246508.1 KEGG: csh:Closa_2427 integral membrane sensor signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, internal region; HAMP linker domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain YP_004246509.1 KEGG: cbe:Cbei_4962 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; HTH transcriptional regulator, AraC; SMART: Signal transduction response regulator, receiver domain; Helix-turn-helix, AraC type, DNA binding domain YP_004246510.1 PFAM: extracellular solute-binding protein, family 7, bacteria; KEGG: csh:Closa_2425 TRAP dicarboxylate transporter DctP subunit YP_004246511.1 PFAM: extracellular solute-binding protein, family 7, bacteria; KEGG: amt:Amet_3788 TRAP dicarboxylate transporter-DctP subunit YP_004246512.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: amt:Amet_3787 tripartite ATP-independent periplasmic transporter DctQ YP_004246513.1 KEGG: csh:Closa_0823 TRAP dicarboxylate transporter DctM subunit; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit YP_004246514.1 PFAM: extracellular solute-binding protein, family 7, bacteria; KEGG: mta:Moth_0422 TRAP dicarboxylate transporter DctP subunit YP_004246515.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sta:STHERM_c04200 transporter YP_004246516.1 KEGG: sta:STHERM_c04210 transporter; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004246517.1 KEGG: brm:Bmur_2043 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004246518.1 KEGG: amt:Amet_3749 electron transfer flavoprotein, alpha/beta-subunit-like protein; PFAM: electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: electron transfer flavoprotein, alpha/beta-subunit, N-terminal YP_004246519.1 KEGG: amt:Amet_3748 electron transfer flavoprotein, alpha subunit-like protein; PFAM: electron transfer flavoprotein, subunit alpha, C-terminal; electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: electron transfer flavoprotein, alpha/beta-subunit, N-terminal YP_004246520.1 KEGG: amt:Amet_3747 FAD linked oxidase domain-containing protein; PFAM: FAD-linked oxidase C-terminal; FAD linked oxidase N-terminal YP_004246521.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bpf:BpOF4_13410 TetR/AcrR family transcriptional regulator YP_004246522.1 KEGG: bvu:BVU_1770 hypothetical protein YP_004246523.1 KEGG: bcv:Bcav_1503 glycerol-1-phosphate dehydrogenase (NAD(P)(+)); PFAM: 3-dehydroquinate synthase AroB YP_004246524.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: sme:SM_b20711 hypothetical protein YP_004246525.1 KEGG: cpy:Cphy_0530 beta-galactosidase; PFAM: glycoside hydrolase, family 2, carbohydrate-binding; glycoside hydrolase, family 2, TIM barrel YP_004246526.1 PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; KEGG: gym:GYMC10_3207 oxidoreductase domain protein YP_004246527.1 KEGG: rec:RHECIAT_PC0000512 hypothetical protein YP_004246528.1 SMART: beta-lactamase-like; KEGG: csh:Closa_4139 hypothetical protein YP_004246529.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cdl:CDR20291_0970 lactoylglutathione lyase YP_004246530.1 PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: efa:EF3004 sulfate transporter family protein YP_004246531.1 KEGG: rba:RB680 L-rhamnose operon transcriptional activator; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004246532.1 PFAM: transaldolase; KEGG: lsl:LSL_1888 fructose-6-phosphate aldolase YP_004246533.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: aoe:Clos_2059 GCN5-related N-acetyltransferase YP_004246534.1 TIGRFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase subunit beta; KEGG: csh:Closa_2394 sodium ion-translocating decarboxylase subunit beta; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase subunit beta YP_004246536.1 KEGG: cce:Ccel_1263 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004246537.1 KEGG: cpy:Cphy_0596 hypothetical protein YP_004246538.1 KEGG: cpy:Cphy_0597 hypothetical protein YP_004246539.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: cpy:Cphy_0598 hypothetical protein YP_004246540.1 KEGG: ajs:Ajs_2100 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004246541.1 KEGG: gem:GM21_0264 transketolase; PFAM: transketolase, N-terminal YP_004246542.1 PFAM: transketolase-like, pyrimidine-binding domain; transketolase, C-terminal; KEGG: gme:Gmet_0552 transketolase subunit B; SMART: transketolase-like, pyrimidine-binding domain YP_004246543.1 TIGRFAM: 2-hydroxy-3-oxopropionate reductase; KEGG: ssm:Spirs_0509 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004246544.1 PFAM: transaldolase; KEGG: pak:HMPREF0675_3492 transaldolase YP_004246545.1 KEGG: oih:OB2814 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004246546.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: cki:Calkr_0568 extracellular solute-binding protein family 1 YP_004246547.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: chd:Calhy_2041 binding-protein-dependent transport systems inner membrane component YP_004246548.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: bcl:ABC0434 sugar ABC transporter permease YP_004246549.1 KEGG: bha:BH3683 xylan beta-1,4-xylosidase; PFAM: glycoside hydrolase, family 43 YP_004246550.1 KEGG: ppm:PPSC2_c2754 hypothetical protein YP_004246551.1 PFAM: oxidoreductase, N-terminal; KEGG: rrs:RoseRS_3454 oxidoreductase domain-containing protein YP_004246552.1 PFAM: asparaginase/glutaminase; KEGG: ade:Adeh_2142 asparaginase YP_004246553.1 PFAM: ABC transporter-like; transport-associated OB, type 2; KEGG: fnu:FN0310 iron(III)-transport ATP-binding protein SfuC; SMART: ATPase, AAA+ type, core YP_004246554.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: fnu:FN0309 iron(III)-transporter permease protein SfuB YP_004246555.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: fnu:FN0308 iron(III)-binding protein YP_004246556.1 PFAM: Uncharacterised protein family UPF0118; KEGG: cth:Cthe_1423 hypothetical protein YP_004246557.1 PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: app:CAP2UW1_2738 filamentation induced by cAMP protein Fic YP_004246558.1 KEGG: ssm:Spirs_3603 oxidoreductase domain protein; PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal YP_004246559.1 KEGG: ssm:Spirs_3602 alcohol dehydrogenase GroES domain protein; PFAM: alcohol dehydrogenase GroES-like; alcohol dehydrogenase, C-terminal YP_004246560.1 PFAM: carbohydrate/purine kinase; KEGG: ssm:Spirs_3601 PfkB domain protein YP_004246561.1 TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; KEGG: cja:CJA_3099 6-phosphogluconate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, C-terminal; 6-phosphogluconate dehydrogenase, NAD-binding YP_004246562.1 PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: ssm:Spirs_3600 RpiR family transcriptional regulator YP_004246563.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ssm:Spirs_3599 extracellular solute-binding protein family 1 YP_004246564.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_3598 binding-protein-dependent transport systems inner membrane component YP_004246565.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: rfr:Rfer_0952 binding-protein-dependent transport systems inner membrane component YP_004246566.1 PFAM: Domain of unknown function DUF89; KEGG: dol:Dole_1580 hypothetical protein YP_004246567.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: cce:Ccel_0941 xylose isomerase domain protein TIM barrel YP_004246568.1 PFAM: Cupin 2, conserved barrel; KEGG: vvu:VV2_0912 hypothetical protein YP_004246569.1 KEGG: bpo:BP951000_0786 iron-containing alcohol dehydrogenase; PFAM: alcohol dehydrogenase, iron-type YP_004246570.1 KEGG: amt:Amet_1589 chromate transporter; TIGRFAM: Chromate transporter long chain; PFAM: Chromate transporter YP_004246571.1 PFAM: pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: dps:DP1348 hypothetical protein YP_004246572.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: taf:THA_942 oxidoreductase, 2-nitropropane dioxygenase family YP_004246573.1 PFAM: Purine nucleoside permease; KEGG: purine nucleoside permease YP_004246574.1 KEGG: bwe:BcerKBAB4_2448 hypothetical protein YP_004246575.1 KEGG: bse:Bsel_0580 amidohydrolase; PFAM: Amidohydrolase 1 YP_004246576.1 KEGG: cbl:CLK_0790 AraC family transcription regulator; PFAM: Bacterial transcription activator, effector binding; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; Bacterial transcription activator, effector binding YP_004246577.1 PFAM: methyltransferase type 11; KEGG: tte:TTE0594 SAM-dependent methyltransferase YP_004246578.1 TIGRFAM: Selenium-dependent molybdenum hydroxylase 1; KEGG: cbk:CLL_A1161 selenium-dependent molybdenum hydroxylase 1; PFAM: aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; [2Fe-2S]-binding; ferredoxin; aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead YP_004246579.1 PFAM: ABC transporter permease; KEGG: ipo:Ilyop_0134 inner-membrane translocator YP_004246580.1 PFAM: ABC transporter permease; KEGG: ipo:Ilyop_0135 inner-membrane translocator YP_004246581.1 PFAM: ABC transporter-like; KEGG: ipo:Ilyop_0136 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004246582.1 PFAM: Basic membrane lipoprotein; KEGG: ipo:Ilyop_0138 basic membrane lipoprotein YP_004246583.1 PFAM: carbohydrate/purine kinase; KEGG: ssm:Spirs_0877 PfkB domain protein YP_004246584.1 KEGG: dal:Dalk_0201 dCMP deaminase; PFAM: CMP/dCMP deaminase, zinc-binding YP_004246585.1 KEGG: drt:Dret_1708 carboxylesterase YP_004246587.1 TIGRFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase subunit beta; KEGG: sta:STHERM_c21580 oxaloacetate decarboxylase subunit beta; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase subunit beta YP_004246588.1 KEGG: ssm:Spirs_4017 biotin/lipoyl attachment domain-containing protein; PFAM: Biotin/lipoyl attachment; pyruvate carboxyltransferase YP_004246589.1 TIGRFAM: Sodium ion-translocating decarboxylase; PFAM: Sodium ion-translocating decarboxylase YP_004246590.1 KEGG: ssm:Spirs_0254 ATPase-like, ParA/MinD; PFAM: ATPase-like, ParA/MinD; SMART: ATPase, AAA+ type, core YP_004246591.1 PFAM: NUDIX hydrolase domain; KEGG: ssm:Spirs_0637 NUDIX hydrolase YP_004246592.1 PFAM: protein of unknown function DUF541; KEGG: hba:Hbal_2183 protein of unknown function DUF541 YP_004246595.1 TIGRFAM: Prevent-host-death protein; KEGG: afn:Acfer_1116 hypothetical protein YP_004246596.1 KEGG: ctc:CTC01933 death on curing protein; TIGRFAM: Death-on-curing protein; PFAM: Filamentation induced by cAMP/death on curing-related YP_004246597.1 KEGG: hdn:Hden_3452 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; PFAM: glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal; glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal YP_004246598.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: cyt:cce_2219 hypothetical protein YP_004246599.1 KEGG: sss:SSUSC84_0197 glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase YP_004246600.1 PFAM: protein of unknown function DUF2088; KEGG: dhd:Dhaf_2636 hypothetical protein YP_004246601.1 KEGG: dhd:Dhaf_2635 triosephosphate isomerase; PFAM: triosephosphate isomerase YP_004246602.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: brm:Bmur_0403 binding-protein-dependent transport systems inner membrane component YP_004246603.1 PFAM: ABC transporter-like; KEGG: brm:Bmur_0404 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004246604.1 KEGG: brm:Bmur_0405 aliphatic sulfonates family ABC transporter periplasmic ligand-binding protein YP_004246605.1 PFAM: phosphoglucose isomerase (PGI); KEGG: gmc:GY4MC1_3102 glucose-6-phosphate isomerase YP_004246606.1 KEGG: pjd:Pjdr2_5567 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004246607.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: dth:DICTH_1953 N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase 1 YP_004246608.1 PFAM: phosphofructokinase domain; KEGG: clo:HMPREF0868_0847 phosphofructokinase YP_004246609.1 TIGRFAM: mannose-6-phosphate isomerase, type I; KEGG: ssm:Spirs_2253 mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase, type I YP_004246610.1 TIGRFAM: Ketose-bisphosphate aldolase, class-II; KEGG: drt:Dret_1398 fructose-1,6-bisphosphate aldolase, class II; PFAM: Ketose-bisphosphate aldolase, class-II YP_004246611.1 KEGG: sjp:SJA_C1-28550 nitrite reductase (NAD(P)H) large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004246612.1 KEGG: cpy:Cphy_1936 glycoside hydrolase clan GH-D; PFAM: glycoside hydrolase, clan GH-D YP_004246614.1 KEGG: lps:LPST_C2947 hypothetical protein YP_004246615.1 KEGG: dwi:Dwil_GK17577 GK17577 gene product from transcript GK17577-RA YP_004246616.1 PFAM: metallo-dependent phosphatase; KEGG: csh:Closa_2704 metallophosphoesterase YP_004246618.1 KEGG: glo:Glov_2766 TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: TonB, C-terminal YP_004246619.1 PFAM: biopolymertransporter ExbD/TolR YP_004246620.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: dap:Dacet_0828 biopolymer transporter ExbD/TolR YP_004246621.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: has:Halsa_1357 TonB-dependent receptor YP_004246622.1 PFAM: ATPase, AAA-4; KEGG: dhd:Dhaf_4703 transcriptional regulator YP_004246625.1 PFAM: nucleotidyl transferase domain; KEGG: net:Neut_0173 DNA polymerase subunit beta YP_004246626.1 KEGG: chl:Chy400_3106 nucleotidyltransferase substrate binding protein, HI0074 family; TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074; PFAM: nucleotidyltransferase substrate binding protein, HI0074 YP_004246627.1 KEGG: dhd:Dhaf_1045 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transporters inner membrane component YP_004246628.1 KEGG: cbe:Cbei_4171 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transporters inner membrane component YP_004246629.1 KEGG: dhd:Dhaf_1043 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein, family 3; SMART: extracellular solute-binding protein, family 3 YP_004246630.1 PFAM: ABC transporter-like; KEGG: cbe:Cbei_4173 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004246632.1 KEGG: tko:TK0888 SpoVT/AbrB family transcription regulator; PFAM: transcription regulator AbrB/SpoV, predicted; SMART: transcription regulator AbrB/SpoV, predicted YP_004246633.1 KEGG: tte:TTE2037 nucleic acid-binding protein; TIGRFAM: protein of unknown function DUF132; SMART: nucleotide binding protein, PINc YP_004246635.1 KEGG: mac:MA1425 transposase YP_004246637.1 PFAM: extracellular ligand-binding receptor; KEGG: csh:Closa_2972 extracellular ligand-binding receptor YP_004246638.1 PFAM: ABC transporter permease; KEGG: csh:Closa_2973 inner-membrane translocator YP_004246639.1 PFAM: ABC transporter permease; KEGG: csh:Closa_2974 inner-membrane translocator YP_004246640.1 PFAM: ABC transporter-like; KEGG: csh:Closa_2975 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004246641.1 KEGG: aoe:Clos_2498 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004246642.1 PFAM: transposase, IS4-like; KEGG: eba:ebA573 IS4 family transposase YP_004246643.1 KEGG: cst:CLOST_0209 hypothetical protein YP_004246644.1 manually curated; PFAM: Cyclic nucleotide-binding domain; KEGG: alv:Alvin_1148 Crp/Fnr family transcriptional regulator; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp YP_004246645.1 KEGG: chu:CHU_0232 antifreeze-related protein YP_004246646.1 KEGG: mtt:Ftrac_0100 antifreeze-related protein; PFAM: Bacterial Ig-like, group 2; SMART: Bacterial Ig-like, group 2 YP_004246647.1 KEGG: chu:CHU_0232 antifreeze-related protein; PFAM: Bacterial Ig-like, group 2; SMART: Bacterial Ig-like, group 2 YP_004246649.1 manually curated; TIGRFAM: Excisionase/Xis, DNA-binding; KEGG: tai:Taci_1498 DNA binding domain protein, excisionase family; PFAM: prophage CP4-57 regulator YP_004246653.1 KEGG: pca:Pcar_0940 DeoR-type transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004246654.1 KEGG: kol:Kole_0486 malate/L-lactate dehydrogenase; PFAM: malate/L-lactate dehydrogenase YP_004246655.1 KEGG: ssm:Spirs_0987 malic protein NAD-binding protein; PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; SMART: Malic enzyme, NAD-binding YP_004246656.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: ssm:Spirs_0127 GCN5-related N-acetyltransferase YP_004246659.1 KEGG: ssm:Spirs_0875 hypothetical protein YP_004246660.1 PFAM: Uncharacterised protein family UPF0126; KEGG: sat:SYN_03005 hypothetical protein YP_004246661.1 KEGG: ssm:Spirs_0879 alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; threonyl/alanyl tRNA synthetase, SAD; SMART: threonyl/alanyl tRNA synthetase, SAD YP_004246662.1 PFAM: SNARE associated Golgi protein; KEGG: aae:aq_2066 hypothetical protein YP_004246663.1 KEGG: purB; adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: adenylosuccinate lyase C-terminal metazoa/fungi; Lyase 1, N-terminal YP_004246664.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: tpp:TPASS_0655 spermidine/putrescine ABC transporter periplasmic binding protein YP_004246665.1 KEGG: ssm:Spirs_1490 PHP domain protein; TIGRFAM: histidinol phosphate phosphatase, HisJ; PFAM: PHP, C-terminal YP_004246666.1 PFAM: ABC-type glycine betaine transporter, substrate-binding domain; KEGG: mta:Moth_1685 substrate-binding region of ABC-type glycine betaine transporter YP_004246667.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: binding-protein-dependent transporters inner membrane component YP_004246668.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: binding-protein-dependent transporters inner membrane component YP_004246669.1 SMART: ATPase, AAA+ type, core; cystathionine beta-synthase, core; TIGRFAM: glycine betaine/L-proline transport ATP-binding subunit; KEGG: glycine betaine/L-proline ABC transporter ATPase; PFAM: ABC transporter-like; cystathionine beta-synthase, core YP_004246670.1 PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: amt:Amet_1467 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_004246671.1 KEGG: cpe:CPE0924 metallo-beta-lactamase family protein; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004246672.1 PFAM: cobyrinic acid a,c-diamide synthase; 4Fe-4S binding domain; KEGG: amt:Amet_1466 cobyrinic acid a,c-diamide synthase YP_004246673.1 PFAM: 4Fe-4S binding domain; KEGG: amt:Amet_1465 cobyrinic acid a,c-diamide synthase YP_004246674.1 PFAM: dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: dhd:Dhaf_1982 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_004246675.1 KEGG: dsy:DSY3441 hypothetical protein; HAMAP: Uncharacterised protein family UPF0251; PFAM: Uncharacterised protein family UPF0251 YP_004246676.1 KEGG: hor:Hore_18310 hypothetical protein YP_004246678.1 KEGG: dly:Dehly_0529 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; HAMAP: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase YP_004246679.1 PFAM: phosphoribosyltransferase; KEGG: ssm:Spirs_0876 phosphoribosyltransferase YP_004246680.1 TIGRFAM: Hypoxanthine phosphoribosyl transferase; KEGG: toc:Toce_2097 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_004246681.1 KEGG: ere:EUBREC_1253 hypothetical protein YP_004246682.1 PFAM: dehydrogenase, E1 component; transketolase-like, pyrimidine-binding domain; transketolase, C-terminal; KEGG: fri:FraEuI1c_5335 dehydrogenase E1 component; SMART: transketolase-like, pyrimidine-binding domain YP_004246683.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain 2, bacterial/archaeal; KEGG: ssm:Spirs_4136 phenylalanyl-tRNA synthetase, alpha subunit; PFAM: Phenylalanyl-tRNA synthetase YP_004246684.1 SMART: tRNA synthetase, B5; B3/B4 tRNA-binding domain; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc subunit beta, archae/euk cytosolic; KEGG: sta:STHERM_c21760 phenylalanyl-tRNA synthetase subunit beta; PFAM: tRNA synthetase, B5 YP_004246685.1 PFAM: ATP phosphoribosyltransferase, catalytic domain; histidine biosynthesis HisG, C-terminal; TIGRFAM: ATP phosphoribosyltransferase, catalytic domain; histidine biosynthesis HisG, C-terminal; HAMAP: histidine biosynthesis HisG, ATP phosphoribosyltransferase, subgroup; KEGG: chu:CHU_1862 ATP phosphoribosyltransferase YP_004246686.1 PFAM: histidinol dehydrogenase, prokaryotic-type; TIGRFAM: histidinol dehydrogenase, prokaryotic-type; HAMAP: histidinol dehydrogenase, prokaryotic-type; KEGG: bvu:BVU_2362 histidinol dehydrogenase YP_004246687.1 PFAM: Aminotransferase, class I/classII; TIGRFAM: histidinol-phosphate aminotransferase; HAMAP: histidinol-phosphate aminotransferase; KEGG: cpi:Cpin_1819 histidinol-phosphate aminotransferase YP_004246688.1 PFAM: imidazoleglycerol-phosphate dehydratase; TIGRFAM: histidinol-phosphatase; histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; HAMAP: imidazoleglycerol-phosphate dehydratase; KEGG: chu:CHU_1270 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_004246689.1 TIGRFAM: imidazole glycerol phosphate synthase, subunit H; HAMAP: imidazole glycerol phosphate synthase, subunit H; KEGG: bfs:BF2891 imidazole glycerol phosphate synthase subunit HisH; PFAM: glutamine amidotransferase class-I, C-terminal YP_004246690.1 HAMAP: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: fjo:Fjoh_2873 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis YP_004246691.1 PFAM: histidine biosynthesis; TIGRFAM: histidine biosynthesis, HisF; HAMAP: histidine biosynthesis, HisF; KEGG: sli:Slin_5537 imidazoleglycerol phosphate synthase, cyclase subunit YP_004246692.1 TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase; HAMAP: phosphoribosyl-ATP pyrophosphohydrolase; histidine biosynthesis bifunctional protein HisIE; KEGG: sli:Slin_5481 phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase-like; phosphoribosyl-AMP cyclohydrolase YP_004246693.1 PFAM: histidine phosphatase superfamily, clade-1; KEGG: cth:Cthe_0946 phosphoglycerate mutase YP_004246694.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: elm:ELI_3511 TetR family transcriptional regulator YP_004246695.1 KEGG: cdl:CDR20291_1647 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004246696.1 KEGG: cdf:CD1754 ABC transporter permease protein YP_004246697.1 KEGG: elm:ELI_3508 hypothetical protein YP_004246698.1 KEGG: tna:CTN_1540 sugar:cation symporter family protein YP_004246699.1 KEGG: bmq:BMQ_3646 glycosyl hydrolase, family 31; PFAM: glycoside hydrolase, family 31 YP_004246700.1 KEGG: tte:TTE1931 hypothetical protein YP_004246701.1 KEGG: bln:Blon_0026 ATPase (AAA+ superfamily)-like protein YP_004246703.1 PFAM: Flavodoxin/nitric oxide synthase; KEGG: tle:Tlet_1577 flavodoxin YP_004246704.1 PFAM: alpha/beta hydrolase fold-1; KEGG: tle:Tlet_1576 hydrolase YP_004246705.1 KEGG: hypothetical protein YP_004246707.1 PFAM: glycosyltransferase 36; carbohydrate binding; glycosyltransferase 36 associated; KEGG: net:Neut_1665 glycosyltransferase 36 YP_004246708.1 PFAM: carbon starvation protein CstA; KEGG: csh:Closa_0267 carbon starvation protein CstA YP_004246709.1 KEGG: pmo:Pmob_0538 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: Diguanylate phosphodiesterase, EAL domain; SMART: Diguanylate phosphodiesterase, EAL domain YP_004246710.1 PFAM: cell shape determining protein MreB/Mrl; KEGG: lsp:Bsph_1023 rod shape-determining protein Mbl YP_004246711.1 PFAM: cell shape determining protein MreB/Mrl; KEGG: bwe:BcerKBAB4_5077 rod shape-determining protein Mbl YP_004246712.1 PFAM: cell shape determining protein MreB/Mrl; KEGG: gwc:GWCH70_3282 rod shape-determining protein Mbl YP_004246713.1 KEGG: mbn:Mboo_1480 hypothetical protein; PFAM: Bacterial Ig-like, group 2; SMART: Bacterial Ig-like, group 2 YP_004246714.1 KEGG: lwe:lwe0595 lipase/acylhydrolase YP_004246715.1 PFAM: PilT protein, N-terminal; KEGG: dba:Dbac_2527 PilT protein domain protein YP_004246716.1 PFAM: protein of unknown function DUF2191; KEGG: maq:Maqu_2253 hypothetical protein YP_004246717.1 manually curated; TIGRFAM: Uncharacterised protein family UPF0758; KEGG: ssm:Spirs_3489 DNA repair protein RadC; PFAM: Uncharacterised protein family UPF0758 YP_004246718.1 KEGG: ppy:PPE_04879 predicted transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004246719.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: toc:Toce_0893 xylose isomerase domain protein TIM barrel YP_004246720.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: apr:Apre_0061 extracellular solute-binding protein family 1 YP_004246721.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: sth:STH2180 glycerol-3-phosphate ABC transporter permease YP_004246722.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: csh:Closa_4235 binding-protein-dependent transport systems inner membrane component YP_004246723.1 KEGG: tde:TDE1234 hypothetical protein YP_004246724.1 KEGG: ssm:Spirs_2474 Na+/glutamate symporter-like protein YP_004246725.1 KEGG: ssm:Spirs_0330 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004246726.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: csh:Closa_4099 glycerophosphoryl diester phosphodiesterase YP_004246727.1 KEGG: amt:Amet_0560 TRAP dicarboxylate transporter DctM subunit; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit YP_004246728.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: amt:Amet_0559 tripartite ATP-independent periplasmic transporter DctQ YP_004246729.1 PFAM: extracellular solute-binding protein, family 7, bacteria; KEGG: amt:Amet_0558 TRAP dicarboxylate transporter-DctP subunit YP_004246730.1 PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: dds:Ddes_1781 LacI family transcriptional regulator YP_004246731.1 KEGG: abi:Aboo_0631 major facilitator superfamily MFS_1 YP_004246732.1 SMART: nitrogen regulatory protein PII; KEGG: toc:Toce_0604 PII family protein YP_004246733.1 PFAM: aldehyde-lyase domain; KEGG: dhd:Dhaf_2073 HpcH/HpaI aldolase YP_004246734.1 KEGG: cpo:COPRO5265_0387 transketolase YP_004246735.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: oih:OB2838 hypothetical protein YP_004246736.1 KEGG: oih:OB2839 hypothetical protein YP_004246737.1 KEGG: afn:Acfer_1101 hypothetical protein YP_004246738.1 KEGG: sta:STHERM_c05930 transcriptional regulatory protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004246739.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: dhd:Dhaf_0900 xylose isomerase domain protein TIM barrel YP_004246740.1 KEGG: bpy:Bphyt_6461 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal YP_004246741.1 KEGG: hel:HELO_3291 tripartite tricarboxylate transporter (TTT) protein, substrate binding protein YP_004246743.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: hel:HELO_3290 tripartite tricarboxylate transporter (TTT) family, large transmembrane protein YP_004246744.1 KEGG: xbo:XBJ1_0873 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, with PEP/pyruvate domain; PFAM: aldehyde-lyase domain YP_004246745.1 KEGG: cpy:Cphy_1465 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004246746.1 KEGG: tro:trd_0311 probable transferase protein YP_004246747.1 TIGRFAM: 2-hydroxy-3-oxopropionate reductase; KEGG: ssm:Spirs_0509 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004246748.1 KEGG: ssm:Spirs_0510 dihydrodipicolinate synthetase; HAMAP: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_004246750.1 KEGG: ank:AnaeK_1420 conserved hypothetical cytosolic protein YP_004246751.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ssm:Spirs_2658 extracellular solute-binding protein family 1 YP_004246752.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_2657 binding-protein-dependent transport systems inner membrane component YP_004246753.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_2656 binding-protein-dependent transport systems inner membrane component YP_004246754.1 KEGG: aac:Aaci_2894 alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase, C-terminal; SMART: alpha-L-arabinofuranosidase, C-terminal YP_004246755.1 KEGG: hor:Hore_20640 regulatory protein ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004246756.1 KEGG: cce:Ccel_2418 hypothetical protein YP_004246757.1 KEGG: mla:Mlab_1274 nitrogenase subunit NifH (ATPase)-like protein YP_004246758.1 KEGG: cbf:CLI_0673 hypothetical protein YP_004246759.1 KEGG: cst:CLOST_0768 arsenite efflux transporter; TIGRFAM: Arsenical-resistance protein ACR3; PFAM: sodium symporter YP_004246760.1 KEGG: hypothetical protein YP_004246761.1 KEGG: dhd:Dhaf_4686 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YP_004246762.1 PFAM: Sodium:dicarboxylate symporter; KEGG: pjd:Pjdr2_6037 sodium:dicarboxylate symporter YP_004246763.1 PFAM: phosphotransferase system, EIIC; KEGG: ssm:Spirs_1357 phosphotransferase system, EIIC YP_004246764.1 KEGG: sat:SYN_01388 cytoplasmic protein YP_004246765.1 KEGG: aoe:Clos_0355 beta-lactamase domain-containing protein; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004246766.1 KEGG: elm:ELI_1460 hypothetical protein YP_004246767.1 KEGG: elm:ELI_3548 hypothetical protein YP_004246768.1 PFAM: protein of unknown function DUF2174, N-terminal; KEGG: cth:Cthe_0029 hypothetical protein YP_004246769.1 KEGG: ppm:PPSC2_c2511 alpha/beta hydrolase YP_004246770.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ere:EUBREC_1411 lactoylglutathione lyase related lyase YP_004246771.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: dsa:Desal_2540 lysine exporter protein (LysE/YggA) YP_004246772.1 KEGG: tte:TTE2576 transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004246773.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: scb:SCAB_79501 sugar-binding lipoprotein YP_004246774.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ttr:Tter_1962 binding-protein-dependent transport systems inner membrane component YP_004246775.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: rxy:Rxyl_0623 binding-protein-dependent transport systems inner membrane component YP_004246776.1 PFAM: glycoside hydrolase, family 31; KEGG: ckn:Calkro_0572 glycoside hydrolase family 31 YP_004246777.1 KEGG: chd:Calhy_2392 hypothetical protein YP_004246778.1 KEGG: hypothetical protein YP_004246779.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: ote:Oter_0821 aldo/keto reductase YP_004246780.1 PFAM: protein of unknown function DUF1680; KEGG: tmt:Tmath_1689 protein of unknown function DUF1680 YP_004246781.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: gym:GYMC10_2588 binding-protein-dependent transport systems inner membrane component YP_004246782.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ttr:Tter_2217 binding-protein-dependent transport systems inner membrane component YP_004246783.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: gym:GYMC10_2586 extracellular solute-binding protein family 1 YP_004246784.1 KEGG: cbe:Cbei_2362 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004246785.1 PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: ere:EUBREC_2023 hypothetical protein YP_004246786.1 KEGG: clo:HMPREF0868_0519 hypothetical protein YP_004246788.1 PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; KEGG: rmr:Rmar_1099 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_004246789.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: ssm:Spirs_4117 4-diphosphocytidyl-2C-methyl-D-erythritolsynthas E YP_004246790.1 PFAM: transcription factor CarD; KEGG: ssm:Spirs_4116 CarD family transcriptional regulator YP_004246791.1 PFAM: glycoside hydrolase, family 77; manually curated; KEGG: ssm:Spirs_4115 4-alpha-glucanotransferase; TIGRFAM: glycoside hydrolase, family 77 YP_004246792.1 KEGG: ssm:Spirs_4112 lipoyltransferase and lipoate-protein ligase; TIGRFAM: Lipoyltransferase/lipoate-protein ligase; PFAM: Biotin/lipoate A/B protein ligase; Lipoate protein ligase, C-terminal YP_004246793.1 KEGG: ssm:Spirs_4109 protein of unknown function DUF558; TIGRFAM: ribosomal RNA small subunit methyltransferase E; PFAM: ribosomal RNA small subunit methyltransferase E YP_004246794.1 TIGRFAM: thymidylate synthase ThyX; HAMAP: thymidylate synthase ThyX; KEGG: ssm:Spirs_4106 thymidylate synthase, flavin-dependent; PFAM: thymidylate synthase ThyX YP_004246795.1 KEGG: sta:STHERM_c17700 hypothetical protein YP_004246796.1 KEGG: nis:NIS_0569 hypothetical protein YP_004246797.1 SMART: excinuclease ABC, C subunit, N-terminal; TIGRFAM: excinuclease ABC, C subunit; KEGG: ssm:Spirs_4068 excinuclease ABC, C subunit; HAMAP: excinuclease ABC, C subunit; PFAM: excinuclease ABC, C subunit, C-terminal; excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein YP_004246798.1 KEGG: ssm:Spirs_4056 DNA polymerase III delta subunit; TIGRFAM: DNA polymerase III subunit delta; PFAM: DNA polymerase III delta YP_004246799.1 KEGG: ssm:Spirs_4055 transcriptional repressor, LexA family; TIGRFAM: peptidase S24, LexA repressor; PFAM: LexA, DNA-binding domain; peptidase S24/S26A/S26B, conserved region YP_004246800.1 KEGG: ssm:Spirs_4051 phosphotransferase system, phosphocarrier protein HPr; TIGRFAM: phosphotransferase system, phosphocarrier HPr protein; PFAM: phosphotransferase system, phosphocarrier HPr protein YP_004246801.1 TIGRFAM: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase; HAMAP: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase; KEGG: ssm:Spirs_4050 HPr kinase; PFAM: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, C-terminal; Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, N-terminal YP_004246802.1 KEGG: ssm:Spirs_4049 ribosomal subunit interface protein YP_004246803.1 KEGG: ssm:Spirs_4048 RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54 YP_004246804.1 SMART: ATPase, AAA+ type, core; manually curated; KEGG: tde:TDE0644 ABC transporter ATP-binding protein; PFAM: ABC transporter-like YP_004246805.1 KEGG: ssm:Spirs_4046 hypothetical protein YP_004246806.1 PFAM: Lipopolysccharide assembly, LptC-related YP_004246807.1 PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: ssm:Spirs_4038 positive regulator of sigma E, RseC/MucC YP_004246808.1 KEGG: ssm:Spirs_4037 hypothetical protein YP_004246809.1 KEGG: dtu:Dtur_0289 glycoside hydrolase family 3 domain protein; PFAM: glycoside hydrolase, family 3, N-terminal; glycoside hydrolase, family 3, C-terminal YP_004246812.1 KEGG: tde:TDE0603 hypothetical protein YP_004246813.1 PFAM: protein of unknown function DUF161; Domain of unknown function DUF2179; KEGG: ipo:Ilyop_0841 protein of unknown function DUF161 YP_004246814.1 KEGG: bph:Bphy_2031 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG YP_004246815.1 KEGG: alv:Alvin_0840 hypothetical protein YP_004246816.1 PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: hmo:HM1_0604 cell filamentation protein fic YP_004246817.1 KEGG: cpy:Cphy_1923 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004246818.1 KEGG: mla:Mlab_0596 hypothetical protein YP_004246819.1 PFAM: RNA methylase; THUMP; KEGG: pca:Pcar_2072 23S rRNA m(2)G2445 methyltransferase; SMART: THUMP YP_004246820.1 PFAM: heat shock protein Hsp33 protein; KEGG: ssm:Spirs_0341 HSP33 protein YP_004246821.1 SMART: ATPase, AAA+ type, core; TIGRFAM: peptidase M41, FtsH; KEGG: ssm:Spirs_2268 ATP-dependent metalloprotease FtsH; PFAM: ATPase, AAA-type, core; peptidase M41, FtsH extracellular; peptidase M41 YP_004246822.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: tin:Tint_2849 short-chain dehydrogenase/reductase SDR YP_004246823.1 KEGG: bpl:BURPS1106A_A1951 membrane-anchored cell surface protein YP_004246824.1 KEGG: tde:TDE2284 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004246825.1 PFAM: ABC transporter-like; KEGG: sta:STHERM_c10090 transporter; SMART: ATPase, AAA+ type, core YP_004246826.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: sta:STHERM_c10100 hypothetical protein YP_004246827.1 KEGG: ssm:Spirs_0495 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004246828.1 KEGG: ssm:Spirs_0494 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core YP_004246829.1 KEGG: tde:TDE2001 oligoendopeptidase F, TIGRFAM: peptidase M3B, oligoendopeptidase-related clade 3; PFAM: peptidase M3A/M3B, thimet/oligopeptidase F YP_004246830.1 PFAM: (uracil-5)-methyltransferase; KEGG: tde:TDE2619 RNA methyltransferase YP_004246831.1 KEGG: cpy:Cphy_3426 NAD+ synthetase; TIGRFAM: NAD synthase; PFAM: NAD/GMP synthase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004246835.1 KEGG: ssm:Spirs_3682 beta-lactamase; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004246836.1 TIGRFAM: DNA polymerase 1; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; KEGG: ssm:Spirs_3676 DNA polymerase I; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; DNA-directed DNA polymerase, family A, palm domain YP_004246837.1 TIGRFAM: dephospho-CoA kinase; HAMAP: dephospho-CoA kinase; KEGG: ssm:Spirs_3675 dephospho-CoA kinase; PFAM: dephospho-CoA kinase YP_004246838.1 KEGG: rru:Rru_A1075 hypothetical protein YP_004246839.1 TIGRFAM: Conserved hyprothetical protein CHP00238, KamA; KEGG: tte:TTE0723 lysine 2,3-aminomutase; PFAM: radical SAM YP_004246840.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ssm:Spirs_3673 major facilitator superfamily MFS_1 YP_004246841.1 KEGG: ele:Elen_1273 protein of unknown function DUF204; HAMAP: Uncharacterised protein family UPF0059; PFAM: Domain of unknown function DUF204 YP_004246842.1 PFAM: Cupin 2, conserved barrel; KEGG: toc:Toce_0578 cupin 2 conserved barrel domain protein YP_004246843.1 TIGRFAM: Hybrid cluster protein; HAMAP: Hybrid cluster protein; KEGG: afn:Acfer_0367 hybrid cluster protein; PFAM: Prismane YP_004246844.1 KEGG: dat:HRM2_20220 hypothetical protein YP_004246845.1 KEGG: ssm:Spirs_3325 hypothetical protein YP_004246846.1 KEGG: hor:Hore_08450 efflux transporter , hydrophobe/amphiphile efflux-3 (HAE3) family YP_004246847.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: mtt:Ftrac_2698 transcriptional regulator, TetR family YP_004246848.1 PFAM: glycosyl hydrolase, family 88; KEGG: ote:Oter_1360 glycosy hydrolase family protein YP_004246849.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: sta:STHERM_c08200 transporter YP_004246850.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: sta:STHERM_c08210 transporter YP_004246851.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: sta:STHERM_c08220 extracellular solute-binding protein, family 1 YP_004246852.1 SMART: Elongation factor P, C-terminal; TIGRFAM: translation elongation factor P; KEGG: ssm:Spirs_3666 translation elongation factor P; HAMAP: translation elongation factor P; PFAM: Elongation factor P, C-terminal; translation elongation factor, KOW-like; translation elongation factor P/YeiP, central YP_004246853.1 KEGG: ssm:Spirs_3665 tRNA synthetase class II (D K and N); PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N) YP_004246854.1 TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; HAMAP: tRNA modification GTPase TrmE; KEGG: sta:STHERM_c02910 tRNA modification GTPase; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related YP_004246855.1 TIGRFAM: glucose-inhibited division protein A; HAMAP: glucose-inhibited division protein A; KEGG: ssm:Spirs_3829 glucose inhibited division protein A; PFAM: glucose-inhibited division protein A-related YP_004246856.1 TIGRFAM: rRNA small subunit methyltransferase G; HAMAP: rRNA small subunit methyltransferase G; KEGG: ssm:Spirs_3828 methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G YP_004246857.1 KEGG: sta:STHERM_c17860 DNA translocase FtsK; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma; ATPase, AAA+ type, core YP_004246858.1 KEGG: ssm:Spirs_0479 aminotransferase class IV; PFAM: Aminotransferase, class IV YP_004246859.1 KEGG: ssm:Spirs_3800 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004246860.1 PFAM: ABC transporter-like; ABC transporter transmembrane domain; KEGG: ssm:Spirs_4147 ABC transporter protein; SMART: ATPase, AAA+ type, core YP_004246861.1 KEGG: ssm:Spirs_3805 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004246862.1 KEGG: ele:Elen_0334 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004246863.1 PFAM: Cobalt transporter; KEGG: ssa:SSA_2365 cobalt transporter CbiQ YP_004246864.1 PFAM: protein of unknown function DUF1393; KEGG: bad:BAD_0599 hypothetical protein YP_004246865.1 PFAM: GMP synthase, C-terminal; glutamine amidotransferase class-I, C-terminal; tRNA-specific 2-thiouridylase; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; HAMAP: GMP synthase; KEGG: azc:AZC_3705 GMP synthase YP_004246866.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cbe:Cbei_3751 glyoxalase/bleomycin resistance protein/dioxygenase YP_004246867.1 KEGG: csh:Closa_3357 MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein YP_004246868.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sua:Saut_2046 major facilitator superfamily protein YP_004246869.1 KEGG: ssm:Spirs_0574 aspartate kinase; TIGRFAM: aspartate kinase domain; PFAM: aspartate/glutamate/uridylate kinase YP_004246870.1 KEGG: dde:Dde_2502 hypothetical protein YP_004246871.1 PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: mlo:mll5659 sugar ABC transporter periplasmic-binding protein YP_004246872.1 PFAM: ABC transporter-like; KEGG: cce:Ccel_2686 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004246873.1 PFAM: ABC transporter permease; KEGG: gym:GYMC10_1389 inner-membrane translocator YP_004246874.1 PFAM: ABC transporter-like; transport-associated OB, type 2; KEGG: ssm:Spirs_0579 ABC transporter; SMART: ATPase, AAA+ type, core YP_004246875.1 KEGG: shi:Shel_27120 hypothetical protein YP_004246876.1 KEGG: csh:Closa_1714 heparinase II/III family protein YP_004246877.1 KEGG: csh:Closa_1924 two component transcriptional regulator, AraC family; PFAM: Signal transduction response regulator, receiver domain; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; Signal transduction response regulator, receiver domain YP_004246878.1 KEGG: csh:Closa_1925 integral membrane sensor signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, internal region; HAMP linker domain; ATPase-like, ATP-binding domain; SMART: HAMP linker domain YP_004246879.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: rec:RHECIAT_PC0000519 sugar ABC transporter substrate-binding protein YP_004246880.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: rle:pRL120664 permease of ABC transporter YP_004246881.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ret:RHE_PF00317 sugar ABC transporter permease protein YP_004246882.1 PFAM: glycosyl hydrolase, family 88; KEGG: rec:RHECIAT_PC0000516 glucoronyl hydrolase protein YP_004246883.1 PFAM: heparinase II/III-like; KEGG: csh:Closa_4172 heparinase II/III family protein YP_004246885.1 PFAM: Maritimacin/linocin-M18 bacteriocin protein; KEGG: amt:Amet_4421 Linocin_M18 bacteriocin protein YP_004246886.1 KEGG: amt:Amet_4422 hypothetical protein YP_004246887.1 KEGG: dal:Dalk_3958 transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated; SMART: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated YP_004246888.1 KEGG: ssm:Spirs_3695 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004246889.1 KEGG: bur:Bcep18194_C7374 YadA/haemagluttinin like protein YP_004246890.1 KEGG: ssm:Spirs_1518 hypothetical protein YP_004246891.1 PFAM: Na+/H+ antiporter NhaC-like; KEGG: bhy:BHWA1_01860 Na+/H+ antiporter YP_004246892.1 TIGRFAM: mannose-6-phosphate isomerase, type I; KEGG: scl:sce4699 mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type I YP_004246893.1 HAMAP: Uncharacterised protein family UPF0597; KEGG: ssm:Spirs_2717 protein of unknown function DUF1063 YP_004246894.1 KEGG: vpr:Vpar_0406 exonuclease RNase T and DNA polymerase III; PFAM: exonuclease, RNase T/DNA polymerase III; SMART: exonuclease YP_004246895.1 KEGG: ssm:Spirs_0904 phosphoesterase PA-phosphatase related protein; PFAM: phosphatidic acid phosphatase type 2/haloperoxidase; SMART: phosphatidic acid phosphatase type 2/haloperoxidase YP_004246896.1 TIGRFAM: tRNA-specific 2-thiouridylase; HAMAP: tRNA-specific 2-thiouridylase; KEGG: emi:Emin_0088 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA-specific 2-thiouridylase YP_004246897.1 PFAM: glucosamine/galactosamine-6-phosphate isomerase; TIGRFAM: glucosamine-6-phosphate isomerase; HAMAP: glucosamine-6-phosphate isomerase; KEGG: pdi:BDI_3568 glucosamine-6-phosphate deaminase YP_004246898.1 PFAM: 4Fe-4S binding domain; KEGG: cbe:Cbei_4835 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004246899.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: dra:DR_2084 glycerophosphoryl diester phosphodiesterase YP_004246900.1 PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: ssm:Spirs_2304 RNA methyltransferase, TrmH family, group 1 YP_004246901.1 PFAM: Uncharacterised protein family UPF0118; KEGG: ssm:Spirs_2291 protein of unknown function UPF0118 YP_004246902.1 KEGG: mpl:Mpal_2170 HhH-GPD family protein; PFAM: HhH-GPD domain; SMART: HhH-GPD domain YP_004246903.1 PFAM: protein of unknown function DUF606; KEGG: cpy:Cphy_1299 hypothetical protein YP_004246904.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like; manually curated; KEGG: app:CAP2UW1_1379 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic YP_004246905.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: dal:Dalk_0459 xylose isomerase domain protein TIM barrel YP_004246906.1 KEGG: cte:CT0945 cobalamin biosynthesis protein CobP; PFAM: Cobinamide kinase/cobinamide phosphate guanyltransferase YP_004246907.1 TIGRFAM: cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; HAMAP: cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; KEGG: pvi:Cvib_0823 cobalamin-5'-phosphate synthase; PFAM: cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase YP_004246908.1 KEGG: sta:STHERM_c21790 hypothetical protein; TIGRFAM: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein; PFAM: Haloacid dehalogenase-like hydrolase YP_004246910.1 PFAM: protein of unknown function DUF62; KEGG: ssm:Spirs_3587 protein of unknown function DUF62 YP_004246911.1 PFAM: protein of unknown function DUF1393; KEGG: ssm:Spirs_3589 protein of unknown function DUF1393 YP_004246912.1 KEGG: ssm:Spirs_3590 ABC transporter protein; PFAM: ABC transporter-like; Cobalt transporter; SMART: ATPase, AAA+ type, core YP_004246913.1 KEGG: ssm:Spirs_0464 TraR/DksA family transcriptional regulator YP_004246914.1 KEGG: ssm:Spirs_0466 beta-lactamase; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004246915.1 PFAM: DbpA, RNA-binding; KEGG: ssm:Spirs_0468 DbpA RNA-binding domain protein YP_004246916.1 KEGG: lma:LmjF34.0690 hypothetical protein YP_004246917.1 KEGG: cwo:Cwoe_3036 aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family UPF0755; PFAM: Uncharacterised protein family UPF0755 YP_004246918.1 PFAM: protein of unknown function DUF1648; KEGG: gym:GYMC10_4762 protein of unknown function DUF1648 YP_004246919.1 KEGG: gym:GYMC10_4763 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004246920.1 PFAM: patatin/phospholipase A2-related; KEGG: slp:Slip_0900 patatin YP_004246921.1 KEGG: cce:Ccel_3209 tetratricopeptide TPR_2 repeat protein YP_004246922.1 PFAM: protein of unknown function DUF208; KEGG: ssm:Spirs_2754 protein of unknown function DUF208 YP_004246923.1 KEGG: cth:Cthe_1396 phospholipase D/transphosphatidylase; PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase YP_004246924.1 KEGG: ssm:Spirs_1177 PfkB domain protein; PFAM: carbohydrate/purine kinase YP_004246927.1 KEGG: ssm:Spirs_3785 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004246928.1 KEGG: xylulokinase; TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY, N-terminal; carbohydrate kinase, FGGY, C-terminal YP_004246929.1 PFAM: Xylose isomerase, TIM barrel domain; TIGRFAM: Xylose isomerase, bacterial type; HAMAP: Xylose isomerase; KEGG: ssm:Spirs_3786 xylose isomerase YP_004246930.1 PFAM: Auxin efflux carrier; KEGG: dda:Dd703_2426 hypothetical protein YP_004246931.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: aldo/keto reductase YP_004246932.1 PFAM: Domain of unknown function DUF125, transmembrane; rubrerythrin; KEGG: bhy:BHWA1_01780 ferritin CCC1 C, ferritin CCC1 like C YP_004246933.1 PFAM: Trp repressor; KEGG: dat:HRM2_21460 repressor TrpR (repressor of Trp operon) YP_004246934.1 TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: ccb:Clocel_3670 undecaprenyl-phosphate glucose phosphotransferase; PFAM: Bacterial sugar transferase YP_004246935.1 KEGG: ssm:Spirs_2473 hypothetical protein YP_004246936.1 KEGG: sli:Slin_5852 hypothetical protein YP_004246937.1 KEGG: ssm:Spirs_4225 hypothetical protein YP_004246938.1 KEGG: tra:Trad_1560 glycosyltransferase 28 domain-containing protein YP_004246939.1 KEGG: tra:Trad_1560 glycosyltransferase 28 domain-containing protein YP_004246940.1 PFAM: glycosyl transferase, group 1; KEGG: cac:CA_C3594 glycosyltransferase YP_004246941.1 KEGG: aar:Acear_1694 efflux transporter , hydrophobe/amphiphile efflux-3 (HAE3) family YP_004246942.1 KEGG: dba:Dbac_2473 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004246943.1 KEGG: tde:TDE1337 hypothetical protein YP_004246944.1 PFAM: metallo-dependent phosphatase; KEGG: ddi:DDB_G0283451 hypothetical protein YP_004246945.1 KEGG: ssm:Spirs_1830 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004246946.1 KEGG: cpy:Cphy_0779 Cof-like hydrolase; TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3 YP_004246947.1 PFAM: Basic membrane lipoprotein; KEGG: sta:STHERM_c17750 membrane lipoprotein TmpC precursor YP_004246948.1 PFAM: ABC transporter-like; KEGG: sta:STHERM_c17740 ABC transporter; SMART: ATPase, AAA+ type, core YP_004246949.1 PFAM: ABC transporter permease; KEGG: sta:STHERM_c17730 permease YP_004246950.1 PFAM: ABC transporter permease; KEGG: amt:Amet_3583 inner-membrane translocator YP_004246951.1 TIGRFAM: Purine nucleoside phosphorylase; KEGG: fma:FMG_0404 purine nucleoside phosphorylase; PFAM: nucleoside phosphorylase domain YP_004246952.1 PFAM: nitroreductase-like; KEGG: sun:SUN_0921 NAD(P)H-flavin oxidoreductase YP_004246953.1 KEGG: tai:Taci_0564 ribosylpyrimidine nucleosidase; PFAM: inosine/uridine-preferring nucleoside hydrolase domain YP_004246954.1 KEGG: pjd:Pjdr2_5261 pectin acetylesterase YP_004246955.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ssm:Spirs_2751 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004246956.1 KEGG: acl:ACL_0438 Fic-domain-containing protein YP_004246957.1 KEGG: mta:Moth_1302 dihydroorotase; PFAM: Amidohydrolase 1 YP_004246958.1 PFAM: ABC transporter-like; KEGG: tjr:TherJR_0417 ectoine/hydroxyectoine ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004246959.1 KEGG: cce:Ccel_0886 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transporters inner membrane component YP_004246960.1 KEGG: tjr:TherJR_0419 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein, family 3; SMART: extracellular solute-binding protein, family 3 YP_004246962.1 KEGG: cth:Cthe_0618 ferrous iron transporter B; TIGRFAM: Ferrous iron transporter B; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transporter B, N-terminal; nucleoside recognition; Ferrous iron transporter B, C-terminal YP_004246963.1 KEGG: llm:llmg_0200 ferrous iron transporter A; PFAM: Ferrous iron transporter Feosubunit alpha; SMART: Ferrous iron transporter Feosubunit alpha YP_004246964.1 KEGG: adg:Adeg_0633 iron (metal) dependent repressor, DtxR family; PFAM: Iron dependent repressor; Iron dependent repressor, N-terminal; SMART: Iron dependent repressor, diptheria toxin type YP_004246965.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ssm:Spirs_1368 extracellular solute-binding protein family 1 YP_004246966.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_1367 binding-protein-dependent transport systems inner membrane component YP_004246967.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_1366 binding-protein-dependent transport systems inner membrane component YP_004246968.1 KEGG: ssm:Spirs_1365 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004246969.1 KEGG: bcl:ABC3646 two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; Signal transduction response regulator, receiver domain YP_004246970.1 KEGG: ssm:Spirs_1363 integral membrane sensor signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, internal region; HAMP linker domain; ATPase-like, ATP-binding domain; SMART: HAMP linker domain YP_004246972.1 KEGG: ate:Athe_0503 acetolactate synthase small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT YP_004246973.1 PFAM: acetohydroxy acid isomeroreductase, catalytic; acetohydroxy acid isomeroreductase C-terminal; TIGRFAM: acetohydroxy acid isomeroreductase; HAMAP: acetohydroxy acid isomeroreductase; KEGG: elm:ELI_2739 ketol-acid reductoisomerase YP_004246974.1 SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase, bacterial type; KEGG: amt:Amet_3458 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain YP_004246975.1 SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase-related; KEGG: str:Sterm_0108 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; pyruvate carboxyltransferase YP_004246976.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit, prokaryotic; Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic; Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup; HAMAP: Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic; KEGG: clj:CLJU_c09060 3-isopropylmalate dehydratase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha YP_004246977.1 PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; TIGRFAM: 3-isopropylmalate dehydratase, small subunit, bacterial-like; 3-isopropylmalate dehydratase, small subunit, subgroup; HAMAP: 3-isopropylmalate dehydratase small subunit; KEGG: bpb:bpr_I1654 3-isopropylmalate dehydratase small subunit LeuD YP_004246978.1 PFAM: isocitrate/isopropylmalate dehydrogenase; TIGRFAM: Isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; KEGG: lba:Lebu_1710 3-isopropylmalate dehydrogenase YP_004246979.1 PFAM: dihydroxy-acid/6-phosphogluconate dehydratase; TIGRFAM: dihydroxy-acid dehydratase; HAMAP: dihydroxy-acid dehydratase; KEGG: amt:Amet_3401 dihydroxy-acid dehydratase YP_004246980.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic; KEGG: cpy:Cphy_3347 acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; thiamine pyrophosphate enzyme, central domain; thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004246981.1 KEGG: tna:CTN_0001 cupin 2, conserved barrel domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004246982.1 KEGG: dhd:Dhaf_2234 rubredoxin-type Fe(Cys)4 protein YP_004246983.1 PFAM: 4Fe-4S binding domain; KEGG: dhd:Dhaf_2235 rubrerythrin YP_004246984.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ssm:Spirs_3049 major facilitator superfamily MFS_1 YP_004246985.1 KEGG: cbe:Cbei_0458 Cof-like hydrolase; TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3 YP_004246986.1 KEGG: kva:Kvar_1983 iron-containing alcohol dehydrogenase; PFAM: alcohol dehydrogenase, iron-type YP_004246987.1 PFAM: heptaprenyl diphosphate synthase subunit I; KEGG: tde:TDE1926 hypothetical protein YP_004246988.1 KEGG: ssm:Spirs_0286 protein of unknown function DUF1312 YP_004246989.1 KEGG: ssm:Spirs_2695 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004246990.1 KEGG: ssm:Spirs_2695 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004246991.1 KEGG: ssm:Spirs_2696 histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004246992.1 manually curated; TIGRFAM: phosphodiesterase MJ0936; KEGG: csh:Closa_0691 phosphodiesterase, MJ0936 family; PFAM: metallo-dependent phosphatase YP_004246994.1 PFAM: Reverse transcriptase; Group II intron, maturase-specific; KEGG: lcz:LCAZH_2204 RNA-directed DNA polymerase YP_004246995.1 PFAM: protein of unknown function DUF1801; KEGG: hau:Haur_3524 hypothetical protein YP_004246996.1 PFAM: Sugar isomerase (SIS); Helix-turn-helix protein RpiR; KEGG: ssm:Spirs_2257 RpiR family transcriptional regulator YP_004246997.1 PFAM: Sugar isomerase (SIS); KEGG: ssm:Spirs_2258 sugar isomerase (SIS) YP_004246998.1 PFAM: ROK; KEGG: ssm:Spirs_2259 ROK family protein YP_004246999.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_2260 binding-protein-dependent transport systems inner membrane component YP_004247000.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_2261 binding-protein-dependent transport systems inner membrane component YP_004247001.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ssm:Spirs_2262 extracellular solute-binding protein family 1 YP_004247002.1 KEGG: ssm:Spirs_3572 ribosome small subunit-dependent GTPase A; HAMAP: ribosome biogenesis GTPase RsgA, PFAM: ribosome biogenesis GTPase RsgA YP_004247003.1 KEGG: ssm:Spirs_3571 hypothetical protein YP_004247004.1 PFAM: protein of unknown function DUF2078, membrane YP_004247005.1 PFAM: protein of unknown function DUF2078, membrane; KEGG: msv:Mesil_0137 protein of unknown function DUF2078, membrane YP_004247007.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: cbh:CLC_1342 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase YP_004247009.1 PFAM: protein of unknown function DUF156; KEGG: xau:Xaut_3092 hypothetical protein YP_004247010.1 KEGG: cre:CHLREDRAFT_182094 nucleoredoxin 2 YP_004247011.1 PFAM: CGCAxxGCC motif; KEGG: dds:Ddes_2310 hypothetical protein YP_004247012.1 PFAM: Condensation domain; KEGG: cce:Ccel_2378 amino acid adenylation domain protein YP_004247013.1 PFAM: Domain of unknown function DUF1508; KEGG: elm:ELI_4348 protein YegP YP_004247014.1 PFAM: thiamine synthesis ApbE/UPF0280; KEGG: clj:CLJU_c35510 thiamine biosynthesis protein YP_004247016.1 TIGRFAM: Diaminopropionate ammonia-lyase; KEGG: ctc:CTC00071 diaminopropionate ammonia-lyase; PFAM: pyridoxal phosphate-dependent enzyme subunit beta YP_004247017.1 KEGG: str:Sterm_1796 Na+/solute symporter; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter YP_004247019.1 KEGG: ssm:Spirs_4097 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004247020.1 KEGG: ssm:Spirs_1060 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain YP_004247021.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: cpy:Cphy_3590 extracellular solute-binding protein YP_004247022.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: cpy:Cphy_3589 binding-protein-dependent transport systems inner membrane component YP_004247023.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: cpy:Cphy_3588 binding-protein-dependent transport systems inner membrane component YP_004247024.1 PFAM: glycoside hydrolase, family 2, TIM barrel; glycoside hydrolase, family 2, carbohydrate-binding; glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; glycoside hydrolase, family 42, domain 5; KEGG: rca:Rcas_2493 beta-galactosidase YP_004247025.1 KEGG: fnu:FN2007 glutathione peroxidase; PFAM: glutathione peroxidase YP_004247026.1 PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: sno:Snov_1929 filamentation induced by cAMP protein Fic YP_004247027.1 KEGG: pru:PRU_1347 glutathione peroxidase; PFAM: glutathione peroxidase YP_004247028.1 KEGG: rci:RCIX1281 hypothetical protein YP_004247029.1 PFAM: Uncharacterised conserved protein UCP016719; KEGG: cpy:Cphy_1124 hypothetical protein YP_004247030.1 KEGG: cpy:Cphy_1125 glycoside hydrolase family 3 protein; PFAM: glycoside hydrolase, family 3, N-terminal YP_004247031.1 KEGG: cpy:Cphy_1127 hypothetical protein YP_004247032.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: cpy:Cphy_1118 extracellular solute-binding protein YP_004247033.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: cpy:Cphy_1119 binding-protein-dependent transport systems inner membrane component YP_004247034.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: cpy:Cphy_1120 binding-protein-dependent transport systems inner membrane component YP_004247035.1 manually curated; PFAM: Periplasmic binding protein/LacI transcriptional regulator; Trp repressor; KEGG: ssm:Spirs_0704 transcriptional regulator, LacI family; SMART: HTH transcriptional regulator, LacI YP_004247036.1 KEGG: shi:Shel_27120 hypothetical protein YP_004247038.1 KEGG: ssm:Spirs_0705 periplasmic binding protein/LacI transcriptional regulator YP_004247039.1 PFAM: ABC transporter-like; KEGG: ssm:Spirs_0706 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004247040.1 PFAM: ABC transporter permease; KEGG: ssm:Spirs_0707 inner-membrane translocator YP_004247041.1 PFAM: oxidoreductase, N-terminal; KEGG: ssm:Spirs_0708 oxidoreductase domain protein YP_004247042.1 PFAM: Xylose isomerase, TIM barrel domain; AP endonuclease, family 2, C-terminal; KEGG: ssm:Spirs_0709 xylose isomerase domain protein TIM barrel YP_004247043.1 TIGRFAM: Branched-chain amino acid aminotransferase II; KEGG: eel:EUBELI_01912 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV YP_004247044.1 KEGG: hor:Hore_08230 WD40 domain protein beta propeller YP_004247046.1 KEGG: lbl:LBL_1905 ATP-binding protein of an ABC transporter complex; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004247047.1 PFAM: Drug/metabolite transporter; KEGG: ssm:Spirs_2387 protein of unknown function DUF6 transmembrane YP_004247048.1 PFAM: Acriflavin resistance protein; KEGG: ssm:Spirs_0900 acriflavin resistance protein YP_004247049.1 KEGG: ssm:Spirs_0899 efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004247050.1 PFAM: Outer membrane efflux protein; KEGG: ssm:Spirs_0898 outer membrane efflux protein YP_004247051.1 PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; FAD dependent oxidoreductase; KEGG: bth:BT_2407 NAD-utilizing dehydrogenase YP_004247052.1 KEGG: tcx:Tcr_1313 hypothetical protein YP_004247053.1 KEGG: tnp:Tnap_0927 transcriptional regulator, DeoR family; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004247054.1 PFAM: Xylose isomerase, TIM barrel domain YP_004247055.1 KEGG: csh:Closa_2529 hypothetical protein YP_004247056.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: sth:STH1157 iron ABC transporter substrate-binding protein YP_004247057.1 PFAM: ABC transporter-like; transport-associated OB, type 2; KEGG: kol:Kole_1983 ABC transporter; SMART: ATPase, AAA+ type, core YP_004247058.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: sth:STH1155 ABC transporter permease YP_004247059.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: bcv:Bcav_3354 N-acylglucosamine 2-epimerase YP_004247060.1 KEGG: rrs:RoseRS_0222 phosphoglucomutase/phosphomannomutase alpha/beta/subunit; PFAM: alpha-D-phosphohexomutase, alpha/beta/alpha domain I; alpha-D-phosphohexomutase, alpha/beta/alpha domain II YP_004247061.1 PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: phe:Phep_0774 glucosamine-6-phosphate deaminase YP_004247062.1 TIGRFAM: PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; PAS fold; KEGG: ipo:Ilyop_2210 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; PAS YP_004247064.1 KEGG: ssm:Spirs_2330 RNP-1 like RNA-binding protein; PFAM: RNA recognition motif domain; SMART: RNA recognition motif domain YP_004247065.1 PFAM: NUDIX hydrolase domain; KEGG: acl:ACL_1086 NTP pyrophosphohydrolase YP_004247066.1 PFAM: alpha/beta hydrolase fold-1; KEGG: apr:Apre_1234 alpha/beta hydrolase fold protein YP_004247068.1 KEGG: tetratricopeptide repeat-containing protein YP_004247069.1 KEGG: hha:Hhal_1832 hypothetical protein YP_004247070.1 KEGG: cts:Ctha_1248 hypothetical protein YP_004247071.1 KEGG: ssm:Spirs_1466 hypothetical protein YP_004247073.1 KEGG: ssm:Spirs_1466 hypothetical protein YP_004247074.1 KEGG: elm:ELI_3760 hypothetical protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004247075.1 KEGG: hypothetical protein YP_004247076.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-4; PAS fold; metal-dependent phosphohydrolase, HD subdomain; KEGG: csh:Closa_2542 diguanylate cyclase and metal dependent phosphohydrolase; SMART: Diguanylate cyclase, predicted; PAS YP_004247077.1 KEGG: cst:CLOST_0660 hypothetical protein; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted YP_004247078.1 PFAM: 4Fe-4S binding domain; KEGG: ccb:Clocel_0249 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004247079.1 KEGG: mmh:Mmah_0121 hypothetical protein YP_004247080.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: ssm:Spirs_1065 aldo/keto reductase YP_004247081.1 KEGG: aba:acid345_1872 glutathione peroxidase; PFAM: glutathione peroxidase YP_004247082.1 KEGG: scb:SCAB_53391 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004247083.1 PFAM: Lipocalin-like; KEGG: vsp:VS_2109 outer membrane lipoprotein blc precursor YP_004247084.1 TIGRFAM: pyruvate formate-lyase activating; KEGG: eat:EAT1b_2351 pyruvate formate-lyase activating enzyme; PFAM: radical SAM YP_004247085.1 TIGRFAM: formate acetyltransferase; KEGG: afl:Aflv_2793 pyruvate-formate lyase; PFAM: pyruvate formate-lyase, PFL; formate C-acetyltransferase glycine radical YP_004247086.1 KEGG: cth:Cthe_2775 Crp/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp YP_004247087.1 KEGG: cst:CLOST_0765 hypothetical protein YP_004247088.1 KEGG: cst:CLOST_0766 hypothetical protein YP_004247089.1 KEGG: oan:Oant_1938 CBS domain-containing protein; PFAM: cystathionine beta-synthase, core; SMART: cystathionine beta-synthase, core YP_004247090.1 PFAM: Domain of unknown function DUF438; KEGG: csh:Closa_2588 protein of unknown function DUF438 YP_004247092.1 KEGG: tmt:Tmath_2069 polyprenyl synthetase; PFAM: polyprenyl synthetase YP_004247093.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ssm:Spirs_1598 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004247094.1 KEGG: dhd:Dhaf_1503 hypothetical protein YP_004247095.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: dal:Dalk_4961 lysine exporter protein (LysE/YggA) YP_004247096.1 KEGG: ssm:Spirs_1288 oligoendopeptidase F; TIGRFAM: peptidase M3B, oligoendopeptidase F; PFAM: peptidase M3A/M3B, thimet/oligopeptidase F; peptidase M3B, oligopeptidase F, N-terminal YP_004247097.1 HAMAP: nucleoside-triphosphatase; KEGG: ssm:Spirs_1289 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; PFAM: Ham1-like protein YP_004247099.1 PFAM: phosphoesterase, RecJ-like; phosphoesterase, DHHA1; KEGG: sta:STHERM_c05780 DHH superfamily protein, subfamily 1 YP_004247100.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Clp protease ATP-binding subunit ClpX; KEGG: ssm:Spirs_1294 ATP-dependent Clp protease ATP-binding subunit ClpX; HAMAP: Clp protease ATP-binding subunit ClpX; PFAM: ATPase, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal YP_004247101.1 HAMAP: peptidase S14, ClpP; KEGG: ssm:Spirs_1295 ATP-dependent Clp protease proteolytic subunit ClpP; PFAM: peptidase S14, ClpP YP_004247102.1 TIGRFAM: Trigger factor; HAMAP: Trigger factor; KEGG: ssm:Spirs_1296 trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Trigger factor, C-terminal, bacterial YP_004247103.1 KEGG: lba:Lebu_1539 arsenate reductase and related; TIGRFAM: transcriptional regulator Spx/MgsR; PFAM: Arsenate reductase-like YP_004247104.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: bpb:bpr_I2736 GNAT family acetyltransferase YP_004247105.1 PFAM: pectinesterase, catalytic; KEGG: bpb:bpr_I1084 pectin methylesterase Pme8A YP_004247106.1 PFAM: Uncharacterised protein family UPF0324, prokaryote; KEGG: apr:Apre_1141 hypothetical protein YP_004247107.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: cst:CLOST_1867 hypothetical protein YP_004247108.1 PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: filamentation induced by cAMP protein Fic YP_004247109.1 KEGG: ssm:Spirs_1297 ATPase AAA central domain protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_004247111.1 KEGG: cno:NT01CX_0730 MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein YP_004247112.1 PFAM: Inhibitor of apoptosis-promoting Bax1-related; KEGG: ssm:Spirs_1304 protein of unknown function UPF0005 YP_004247113.1 KEGG: ssm:Spirs_1311 PHP domain protein; PFAM: PHP, C-terminal; SMART: polymerase/histidinol phosphatase, N-terminal YP_004247114.1 KEGG: ssm:Spirs_1312 hypothetical protein YP_004247115.1 KEGG: ssm:Spirs_1313 signal transduction protein with CBS domains; PFAM: cystathionine beta-synthase, core; ATPase-like, ATP-binding domain; SMART: cystathionine beta-synthase, core YP_004247116.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: tde:TDE1083 RNA pseudouridylate synthase YP_004247117.1 KEGG: ssm:Spirs_1009 peptidase M29 aminopeptidase II YP_004247118.1 TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter; nitrogen regulatory protein PII; KEGG: ammonium transporter; SMART: nitrogen regulatory protein PII YP_004247119.1 TIGRFAM: Formyltetrahydrofolate deformylase; KEGG: sta:STHERM_c16570 formyltetrahydrofolate deformylase; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT YP_004247120.1 KEGG: sta:STHERM_c09580 hypothetical protein; TIGRFAM: exonuclease VII, small subunit; PFAM: exonuclease VII, small subunit YP_004247121.1 TIGRFAM: exonuclease VII, large subunit; HAMAP: exonuclease VII, large subunit; KEGG: ssm:Spirs_1343 exodeoxyribonuclease VII large subunit; PFAM: exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type YP_004247123.1 PFAM: 4Fe-4S binding domain; KEGG: nth:Nther_2882 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_004247125.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: ipo:Ilyop_0501 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004247126.1 KEGG: aoe:Clos_0893 hypothetical protein YP_004247127.1 PFAM: 4Fe-4S binding domain; KEGG: hor:Hore_20120 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_004247128.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: cce:Ccel_0922 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain YP_004247129.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: dat:HRM2_29040 TRAP transporter solute receptor (TAXI family protein) YP_004247130.1 KEGG: dat:HRM2_29050 TRAP transporter 4TM/12TM fusion protein; TIGRFAM: TRAP transporter 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit YP_004247131.1 SMART: semialdehyde dehydrogenase, NAD-binding; TIGRFAM: aspartate-semialdehyde dehydrogenase, bacterial; KEGG: aspartate-semialdehyde dehydrogenase; PFAM: semialdehyde dehydrogenase, dimerisation domain; semialdehyde dehydrogenase, NAD-binding YP_004247132.1 PFAM: FAD dependent oxidoreductase; KEGG: dat:HRM2_29060 SoxB2 YP_004247133.1 PFAM: BFD-like [2Fe-2S]-binding domain; KEGG: ssm:Spirs_2979 FAD dependent oxidoreductase YP_004247134.1 KEGG: ssm:Spirs_2834 hypothetical protein YP_004247135.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ckr:CKR_1805 hypothetical protein YP_004247136.1 PFAM: 4Fe-4S binding domain; KEGG: ckr:CKR_1804 hypothetical protein YP_004247137.1 PFAM: dihydrodipicolinate reductase, C-terminal; dihydrodipicolinate reductase, N-terminal; TIGRFAM: dihydrodipicolinate reductase, bacterial/plant; HAMAP: dihydrodipicolinate reductase, bacterial/plant; KEGG: dihydrodipicolinate reductase YP_004247138.1 PFAM: dihydrodipicolinate synthetase; TIGRFAM: dihydrodipicolinate synthase subfamily; HAMAP: dihydrodipicolinate synthase; KEGG: sta:STHERM_c08670 dihydrodipicolinate synthase YP_004247139.1 KEGG: tai:Taci_1430 GntR family transcriptional regulator; PFAM: GntR, C-terminal; SMART: GntR, C-terminal YP_004247140.1 TIGRFAM: dihydrodipicolinate reductase, bacterial/plant; KEGG: sta:STHERM_c08680 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase, C-terminal; dihydrodipicolinate reductase, N-terminal YP_004247141.1 TIGRFAM: dihydrodipicolinate synthase subfamily; HAMAP: dihydrodipicolinate synthase; KEGG: ssm:Spirs_1462 dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_004247142.1 PFAM: Aminotransferase, class I/classII; TIGRFAM: LL-diaminopimelate aminotransferase, plant-related; HAMAP: LL-diaminopimelate aminotransferase; KEGG: ssm:Spirs_1461 LL-diaminopimelate aminotransferase YP_004247143.1 KEGG: ssm:Spirs_1460 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2, C-terminal; Orn/DAP/Arg decarboxylase 2, N-terminal YP_004247144.1 KEGG: tol-pal system-associated acyl-CoA thioesterase; TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily YP_004247146.1 KEGG: fsu:Fisuc_0386 hypothetical protein YP_004247147.1 PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: dps:DP0137 hypothetical protein YP_004247148.1 PFAM: deoxyribonuclease, TatD-related YP_004247149.1 PFAM: Branched-chain amino acid transport, AzlD; KEGG: bha:BH2911 hypothetical protein YP_004247150.1 PFAM: Branched-chain amino acid transport, permease; KEGG: cce:Ccel_2597 AzlC family protein YP_004247152.1 PFAM: peptide methionine sulphoxide reductase MsrA; methionine sulphoxide reductase B; TIGRFAM: peptide methionine sulphoxide reductase MsrA; methionine sulphoxide reductase B; HAMAP: peptide methionine sulphoxide reductase MsrA; KEGG: plt:Plut_0905 bifunctional methionine sulfoxide reductase B/A protein YP_004247153.1 PFAM: protein of unknown function DUF1295; KEGG: pif:PITG_00083 hypothetical protein YP_004247154.1 KEGG: lsg:lse_2045 hypothetical protein YP_004247155.1 KEGG: cbe:Cbei_3767 FMN-binding domain-containing protein; PFAM: FMN-binding; SMART: FMN-binding YP_004247156.1 PFAM: metallo-dependent phosphatase; KEGG: fba:FIC_00553 phosphoribosylglycinamide formyltransferase YP_004247157.1 PFAM: YhhN-like; KEGG: ols:Olsu_1230 YhhN family protein YP_004247158.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: amt:Amet_0294 TetR family transcriptional regulator YP_004247159.1 KEGG: rce:RC1_0157 hypothetical protein YP_004247160.1 KEGG: rva:Rvan_3184 hypothetical protein YP_004247162.1 PFAM: ATPase, V0/A0 complex, subunit C/D; KEGG: ssm:Spirs_3113 H+transporting two-sector ATPase C (AC39) subunit YP_004247163.1 PFAM: ATPase, V0/A0 complex, 116kDa subunit; KEGG: ssm:Spirs_3112 V-type ATPase 116 kDa subunit YP_004247164.1 PFAM: ATPase, F0/V0 complex, subunit C; KEGG: ssm:Spirs_3111 H+transporting two-sector ATPase C subunit YP_004247165.1 PFAM: ATPase, V1/A1 complex, subunit F; KEGG: ssm:Spirs_3110 vacuolar H+transporting two-sector ATPase F subunit YP_004247166.1 PFAM: ATPase, V1/A1 complex, subunit E; KEGG: mmg:MTBMA_c13440 A1AO ATPase, subunit E YP_004247167.1 HAMAP: V-type ATP synthase catalytic subunit A/alpha; KEGG: ssm:Spirs_3108 sodium-transporting two-sector ATPase; PFAM: ATPase, alpha/subunit beta, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/subunit beta, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YP_004247168.1 KEGG: ssm:Spirs_3107 H+transporting two-sector ATPase alpha/subunit beta central region; HAMAP: V-type ATP synthase regulatory subunit B/beta; PFAM: ATPase, alpha/subunit beta, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/subunit beta, N-terminal; ATPase, F1/V1/A1 complex, alpha/subunit beta, C-terminal YP_004247169.1 TIGRFAM: ATPase, V1/A1 complex, subunit D; HAMAP: ATPase, V1/A1 complex, subunit D; KEGG: ssm:Spirs_3106 V-type ATPase, D subunit; PFAM: ATPase, V1/A1 complex, subunit D YP_004247170.1 PFAM: UspA; KEGG: ssm:Spirs_3105 UspA domain protein YP_004247171.1 PFAM: phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; KEGG: ssm:Spirs_3104 PTS IIA-like nitrogen-regulatory protein PtsN YP_004247172.1 KEGG: ssm:Spirs_3500 hypothetical protein YP_004247173.1 KEGG: cbe:Cbei_1932 iron-containing alcohol dehydrogenase; PFAM: alcohol dehydrogenase, iron-type YP_004247174.1 KEGG: cce:Ccel_2993 protein of unknown function DUF1121 YP_004247175.1 KEGG: ere:EUBREC_2244 exonuclease of the beta-lactamase fold involved in RNA processing; PFAM: beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: beta-lactamase-like YP_004247176.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: mrb:Mrub_3000 GCN5-related N-acetyltransferase YP_004247177.1 PFAM: protein of unknown function DUF81; KEGG: hypothetical protein YP_004247178.1 KEGG: dal:Dalk_0527 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004247179.1 KEGG: csh:Closa_3564 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004247180.1 PFAM: protein of unknown function DUF318, transmembrane; KEGG: csh:Closa_2754 permease YP_004247181.1 TIGRFAM: Redox-active disulphide protein 2; KEGG: csh:Closa_2752 redox-active disulfide protein 2 YP_004247182.1 KEGG: dsy:DSY4671 hypothetical protein; PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight YP_004247183.1 PFAM: Drug/metabolite transporter; KEGG: ssm:Spirs_4287 protein of unknown function DUF6 transmembrane YP_004247184.1 PFAM: Major facilitator superfamily MFS-1; KEGG: amt:Amet_3781 major facilitator transporter YP_004247185.1 TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFG/EF2, C-terminal; KEGG: dsa:Desal_3190 GTP-binding protein TypA; SMART: translation elongation factor EFG/EF2, C-terminal YP_004247186.1 TIGRFAM: exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: fnu:FN0047 exodeoxyribonuclease III; PFAM: endonuclease/exonuclease/phosphatase YP_004247187.1 PFAM: aspartate--ammonia ligase; TIGRFAM: aspartate--ammonia ligase; HAMAP: aspartate--ammonia ligase; KEGG: pdi:BDI_3717 asparagine synthetase AsnA YP_004247188.1 KEGG: ssm:Spirs_3219 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004247189.1 TIGRFAM: glycoside hydrolase, family 1, beta-glucosidase; KEGG: sta:STHERM_c21030 beta-glucosidase A; PFAM: glycoside hydrolase, family 1 YP_004247190.1 PFAM: cobyrinic acid a,c-diamide synthase; KEGG: bhy:BHWA1_02684 plasmid partition protein YP_004247192.1 KEGG: lbf:LBF_3272 glycosidase; PFAM: glycosyl hydrolase, family 13, catalytic domain; SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain YP_004247193.1 PFAM: glutamine synthetase, catalytic domain; KEGG: cth:Cthe_0863 L-glutamine synthetase YP_004247197.1 PFAM: DNA helicase, UvrD/REP type; KEGG: ssm:Spirs_2383 UvrD/REP helicase YP_004247198.1 PFAM: small multi-drug export; KEGG: ssm:Spirs_2382 small multi-drug export YP_004247199.1 PFAM: Domain of unknown function DUF362; 4Fe-4S binding domain; KEGG: toc:Toce_1178 hypothetical protein YP_004247200.1 PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; KEGG: ssm:Spirs_2381 Fmu (Sun) domain protein YP_004247201.1 PFAM: cytochrome C assembly protein, transmembrane domain; KEGG: cce:Ccel_1660 cytochrome C biogenesis protein transmembrane region YP_004247202.1 PFAM: Redoxin; KEGG: dhd:Dhaf_2283 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004247203.1 PFAM: Hly-III-related; KEGG: ssm:Spirs_2319 Hly-III family protein YP_004247204.1 PFAM: ABC transporter-like; KEGG: afu:AF0680 glutamine ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004247205.1 KEGG: gsu:GSU3405 amino acid ABC transporter permease; TIGRFAM: Amino acid ABC transporter permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004247206.1 KEGG: dal:Dalk_1255 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein, family 3; SMART: extracellular solute-binding protein, family 3 YP_004247207.1 KEGG: dvl:Dvul_1824 extracellular solute-binding protein; PFAM: extracellular solute-binding protein, family 3; SMART: extracellular solute-binding protein, family 3 YP_004247208.1 PFAM: acid phosphatase/vanadium-dependent haloperoxidase-related; KEGG: llk:LLKF_1021 hypothetical protein YP_004247209.1 PFAM: Major facilitator superfamily MFS-1; KEGG: tme:Tmel_0198 major facilitator transporter YP_004247210.1 TIGRFAM: Aconitase, KEGG: mtp:Mthe_0285 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel YP_004247211.1 KEGG: oih:OB2167 isocitrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_004247212.1 KEGG: tva:TVAG_095240 haloacid dehalogenase-like hydrolase family protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004247213.1 TIGRFAM: citrate synthase, type II; KEGG: scl:sce8281 hypothetical protein; PFAM: citrate synthase-like YP_004247214.1 KEGG: csh:Closa_1269 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004247215.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: cbf:CLI_1373 guanine deaminase YP_004247216.1 PFAM: argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; HAMAP: argininosuccinate synthase; KEGG: tma:TM1780 argininosuccinate synthase YP_004247217.1 PFAM: ABC transporter-like; KEGG: kol:Kole_0152 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004247218.1 KEGG: sth:STH217 hypothetical protein YP_004247219.1 PFAM: Haloacid dehalogenase-like hydrolase YP_004247220.1 TIGRFAM: HflC; PFAM: Band 7 protein; KEGG: ssm:Spirs_2891 HflC protein; SMART: Band 7 protein YP_004247221.1 TIGRFAM: HflK; PFAM: Band 7 protein; KEGG: sta:STHERM_c16310 hypothetical protein; SMART: Band 7 protein YP_004247222.1 PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding domain; TIGRFAM: Methionyl-tRNA synthetase, class Ia; HAMAP: Methionyl-tRNA synthetase; KEGG: ssm:Spirs_2889 methionyl-tRNA synthetase YP_004247223.1 PFAM: methicillin resistance protein; KEGG: ssm:Spirs_2888 methicillin resistance protein YP_004247224.1 TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; KEGG: sta:STHERM_c03310 UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal YP_004247225.1 TIGRFAM: ribosomal protein S6; HAMAP: ribosomal protein S6, plastid/chloroplast; KEGG: ssm:Spirs_2879 ribosomal protein S6; PFAM: ribosomal protein S6 YP_004247226.1 KEGG: ssm:Spirs_2878 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_004247227.1 TIGRFAM: ribosomal protein S18; HAMAP: ribosomal protein S18; KEGG: ssm:Spirs_2877 ribosomal protein S18; PFAM: ribosomal protein S18 YP_004247228.1 KEGG: ssm:Spirs_2876 hypothetical protein YP_004247229.1 TIGRFAM: ribosomal protein L9, bacteria/chloroplast; HAMAP: ribosomal protein L9, bacteria/chloroplast; KEGG: ssm:Spirs_2875 ribosomal protein L9; PFAM: ribosomal protein L9, N-terminal; ribosomal protein L9, C-terminal YP_004247230.1 KEGG: ssm:Spirs_2874 replicative DNA helicase; TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal YP_004247231.1 KEGG: ssm:Spirs_2870 membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF YP_004247232.1 PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: ssm:Spirs_2869 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_004247233.1 PFAM: phosphatidate cytidylyltransferase; KEGG: tde:TDE2343 phosphatidate cytidylyltransferase YP_004247234.1 PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; HAMAP: Di-trans-poly-cis-decaprenylcistransferase-like; KEGG: sta:STHERM_c13090 undecaprenyl pyrophosphate synthetase YP_004247235.1 TIGRFAM: ribosome recycling factor; HAMAP: ribosome recycling factor, bacterial-like; KEGG: ssm:Spirs_2866 ribosome recycling factor; PFAM: ribosome recycling factor YP_004247236.1 TIGRFAM: translation elongation factor EFTs/EF1B; HAMAP: translation elongation factor EFTs/EF1B; KEGG: ssm:Spirs_2865 translation elongation factor Ts; PFAM: translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal YP_004247237.1 KEGG: ssm:Spirs_2864 ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: ribosomal protein S2 YP_004247238.1 KEGG: sta:STHERM_c13530 transporter; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004247239.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sta:STHERM_c13520 hypothetical protein YP_004247240.1 KEGG: sta:STHERM_c13510 transporter; TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: extracellular solute-binding protein, family 7, bacteria YP_004247241.1 TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: btk:BT9727_4188 Maf-like protein; PFAM: Maf-like protein YP_004247242.1 KEGG: tde:TDE1403 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004247243.1 HAMAP: Dehydroquinase class I; shikimate, quinate/shikimate dehydrogenase; KEGG: ssm:Spirs_2853 shikimate 5-dehydrogenase; PFAM: Dehydroquinase class I; shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_004247244.1 KEGG: ssm:Spirs_2852 hypothetical protein YP_004247245.1 KEGG: ssm:Spirs_2851 helicase; PFAM: Restriction endonuclease, type I, R subunit/type III, Res subunit; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004247246.1 TIGRFAM: chorismate synthase; KEGG: sta:STHERM_c05920 chorismate synthase; PFAM: chorismate synthase YP_004247247.1 KEGG: sta:STHERM_c05910 shikimate kinase; HAMAP: shikimate kinase; PFAM: shikimate kinase YP_004247249.1 KEGG: ssm:Spirs_1451 metal-dependent phosphohydrolase HD sub domain protein; PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: metal-dependent phosphohydrolase, HD domain YP_004247250.1 TIGRFAM: ribonucleotide reductase regulator NrdR-like; HAMAP: ribonucleotide reductase regulator NrdR-like; KEGG: ssm:Spirs_1455 ATP-cone domain protein; PFAM: ATP-cone YP_004247251.1 KEGG: ssm:Spirs_1463 hypothetical protein YP_004247252.1 KEGG: deh:cbdb_A115 molybdopterin-guanine dinucleotide biosynthesis protein A YP_004247253.1 KEGG: ssm:Spirs_3136 hypothetical protein; TIGRFAM: protein of unknown function DUF165; PFAM: protein of unknown function DUF165 YP_004247254.1 PFAM: inositol monophosphatase; KEGG: ssm:Spirs_3133 inositol monophosphatase YP_004247255.1 TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; transcription-repair-coupling factor domain; KEGG: ssm:Spirs_2540 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004247256.1 TIGRFAM: tRNA (guanine-N-7) methyltransferase; HAMAP: tRNA (guanine-N-7) methyltransferase; KEGG: tde:TDE1130 methyltransferase, PFAM: tRNA (guanine-N-7) methyltransferase YP_004247257.1 TIGRFAM: Small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; translation elongation factor EFG/EF2, domain IV; translation elongation factor EFG/EF2, C-terminal; KEGG: ssm:Spirs_2536 small GTP-binding protein; SMART: translation elongation factor EFG/EF2, domain IV; translation elongation factor EFG/EF2, C-terminal YP_004247258.1 KEGG: mta:Moth_1627 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004247259.1 TIGRFAM: translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFG/EF2, domain IV; translation elongation factor EFG/EF2, C-terminal; KEGG: ssm:Spirs_2534 translation elongation factor G; SMART: translation elongation factor EFG/EF2, C-terminal; translation elongation factor EFG/EF2, domain IV YP_004247260.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: has:Halsa_1091 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase YP_004247261.1 PFAM: chloride channel, voltage gated; KEGG: pjd:Pjdr2_3532 chloride channel core YP_004247262.1 KEGG: gka:GK1906 L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin, N-terminal YP_004247263.1 PFAM: L-fucose isomerase-like, C-terminal; KEGG: L-fucose isomerase-like protein YP_004247264.1 KEGG: dbr:Deba_0069 hypothetical protein YP_004247265.1 KEGG: dhd:Dhaf_2181 aldehyde dehydrogenase; PFAM: aldehyde dehydrogenase domain YP_004247266.1 KEGG: ssm:Spirs_0031 glutamyl aminopeptidase; PFAM: peptidase M42 YP_004247267.1 PFAM: Cation/H+ exchanger; KEGG: amt:Amet_4404 sodium/hydrogen exchanger YP_004247268.1 PFAM: Magnesium chelatase, ChlI subunit; KEGG: dol:Dole_2735 Mg chelatase, subunit ChlI YP_004247269.1 KEGG: cbt:CLH_1502 Na+-driven multidrug efflux pump; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein YP_004247270.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: ssm:Spirs_1533 DegT/DnrJ/EryC1/StrS aminotransferase YP_004247271.1 KEGG: ssm:Spirs_1534 ATP-NAD/AcoX kinase; HAMAP: inorganic polyphosphate/ATP-NAD kinase, predicted; PFAM: inorganic polyphosphate/ATP-NAD kinase, predicted YP_004247272.1 KEGG: sta:STHERM_c08840 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC YP_004247273.1 KEGG: eat:EAT1b_1013 hypothetical protein YP_004247274.1 PFAM: glycoside hydrolase, family 57, N-terminal; KEGG: ssm:Spirs_1540 glycoside hydrolase family 57 YP_004247275.1 PFAM: nucleoside phosphorylase domain; TIGRFAM: Purine nucleoside phosphorylase; HAMAP: Purine nucleoside phosphorylase; KEGG: amt:Amet_4228 purine nucleoside phosphorylase YP_004247276.1 KEGG: sta:STHERM_c08890 hypothetical protein YP_004247277.1 PFAM: glycoside hydrolase, family 57, N-terminal; Kinin peptide; Domain of unknown function DUF1957; KEGG: ssm:Spirs_1542 domain of unknown function DUF1957 YP_004247278.1 TIGRFAM: MraZ; HAMAP: MraZ; KEGG: ssm:Spirs_1544 MraZ protein; PFAM: MraZ domain YP_004247279.1 TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; KEGG: ssm:Spirs_1545 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW YP_004247281.1 TIGRFAM: UDP-MurNAc-pentapeptide synthetase; KEGG: ssm:Spirs_1547 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal YP_004247282.1 PFAM: glycosyl transferase, family 4; KEGG: amt:Amet_2882 phospho-N-acetylmuramoyl-pentapeptide-transferase YP_004247283.1 PFAM: cell cycle protein; KEGG: slp:Slip_0794 cell division protein FtsW YP_004247285.1 TIGRFAM: cell division protein family FtsA; PFAM: cell division protein FtsA domain; KEGG: ssm:Spirs_1551 cell division protein FtsA; SMART: cell division protein FtsA domain YP_004247286.1 TIGRFAM: cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; KEGG: ssm:Spirs_1552 cell division protein FtsZ; SMART: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain YP_004247287.1 KEGG: ssm:Spirs_1553 tyrosine recombinase XerD; HAMAP: tyrosine recombinase xerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004247288.1 PFAM: protein of unknown function DUF81; KEGG: cbt:CLH_3273 transporter YP_004247289.1 PFAM: DNA recombination-mediator protein A; KEGG: tde:TDE1207 DNA processing protein DprA YP_004247290.1 KEGG: gur:Gura_4012 tyrosine recombinase XerC; HAMAP: tyrosine recombinase xerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004247291.1 TIGRFAM: ATP-dependent protease HslV subunit; HAMAP: ATP-dependent protease HslV subunit; KEGG: tde:TDE1210 ATP-dependent protease peptidase subunit; PFAM: Proteasome, subunit alpha/beta YP_004247292.1 SMART: ATPase, AAA+ type, core; TIGRFAM: heat shock protein HslU; KEGG: ssm:Spirs_1558 heat shock protein HslVU, ATPase HslU; HAMAP: heat shock protein HslU; PFAM: ATPase, AAA-2 YP_004247293.1 KEGG: cpy:Cphy_2694 GTP-binding signal recognition particle; PFAM: Signal recognition particle, SRP54 subunit, GTPase; SMART: Signal recognition particle, SRP54 subunit, GTPase; ATPase, AAA+ type, core YP_004247294.1 KEGG: ssm:Spirs_2628 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain YP_004247295.1 KEGG: bhr:BH0262 cell wall endopeptidase, family M23/M37; PFAM: peptidase M23; peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding Lysin subgroup YP_004247296.1 SMART: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; TIGRFAM: SecA protein; KEGG: ssm:Spirs_2625 preprotein translocase, Secsubunit alpha; HAMAP: SecA protein; PFAM: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; SecA Wing/Scaffold; SEC-C motif YP_004247297.1 HAMAP: N-acetylglucosaminyltransferase, MurG; KEGG: ssm:Spirs_1705 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase, family 28, C-terminal; glycosyl transferase, family 28 YP_004247298.1 PFAM: colicin V production, CvpA; KEGG: tde:TDE1973 CvpA family protein YP_004247299.1 KEGG: ssm:Spirs_1707 DNA polymerase III gamma/tau subunits YP_004247300.1 KEGG: ssm:Spirs_1708 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004247301.1 KEGG: ssm:Spirs_1709 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core YP_004247302.1 SMART: Helicase, ATP-dependent, c2 type; KEGG: ssm:Spirs_1712 helicase C2 YP_004247303.1 HAMAP: chaperonin Cpn10; PFAM: chaperonin Cpn10; KEGG: sta:STHERM_c05480 hypothetical protein; SMART: chaperonin Cpn10 YP_004247305.1 KEGG: ssm:Spirs_1715 RNA polymerase, sigma 70 subunit, RpoD subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2 YP_004247306.1 PFAM: HTH transcriptional regulator, GntR; KEGG: csh:Closa_2877 GntR family transcriptional regulator YP_004247307.1 HAMAP: 5-keto 4-deoxyuronate isomerase; KEGG: csh:Closa_3486 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; PFAM: KduI/IolB isomerase YP_004247308.1 KEGG: eel:EUBELI_01110 gluconate 5-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004247309.1 TIGRFAM: pyruvate, phosphate dikinase; KEGG: rmr:Rmar_0942 pyruvate, phosphate dikinase; PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme YP_004247311.1 PFAM: peptidase M22, glycoprotease; TIGRFAM: peptidase M22, O-sialoglycoprotein peptidase; peptidase M22, glycoprotease subgroup; HAMAP: peptidase M22, O-sialoglycoprotein peptidase; KEGG: ssm:Spirs_1796 metalloendopeptidase, glycoprotease family YP_004247312.1 KEGG: tde:TDE1684 adenine phosphoribosyltransferase; HAMAP: adenine phosphoribosyl transferase; PFAM: phosphoribosyltransferase YP_004247313.1 KEGG: ssm:Spirs_1718 ABC transporter protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004247314.1 TIGRFAM: type III pantothenate kinase; HAMAP: type III pantothenate kinase; KEGG: ttm:Tthe_0371 transcriptional acitvator, Baf family; PFAM: type III pantothenate kinase YP_004247315.1 PFAM: peptidase M29, aminopeptidase II; KEGG: bga:BG0068 aminopeptidase II YP_004247316.1 KEGG: aminopeptidase S; manually curated; PFAM: peptidase M29, aminopeptidase II YP_004247317.1 SMART: PUR-alpha/beta/gamma, DNA/RNA-binding; KEGG: ssm:Spirs_1866 PUR-alpha/beta/gamma DNA/RNA-binding protein YP_004247318.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: dde:Dde_0792 acetyltransferase (GNAT) family protein YP_004247319.1 KEGG: kko:Kkor_1898 ribonuclease H; PFAM: ribonuclease HII/HIII YP_004247320.1 PFAM: RecF/RecN/SMC; KEGG: ssm:Spirs_1868 chromosome segregation protein SMC YP_004247321.1 TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; KEGG: ssm:Spirs_1871 signal recognition particle protein; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core YP_004247322.1 TIGRFAM: ribosomal protein S16; HAMAP: ribosomal protein S16; KEGG: ssm:Spirs_1872 ribosomal protein S16; PFAM: ribosomal protein S16 YP_004247323.1 HAMAP: Uncharacterised protein family UPF0109, bacterial; KEGG: ssm:Spirs_1873 R-binding protein (contains KH domain) YP_004247324.1 TIGRFAM: 16S rRNA processing protein RimM; HAMAP: 16S rRNA processing protein RimM; KEGG: tde:TDE0883 16S rRNA processing protein RimM; PFAM: RimM protein YP_004247325.1 PFAM: tRNA (guanine-N1-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: ssm:Spirs_1875 tRNA (guanine-N1)-methyltransferase YP_004247326.1 TIGRFAM: ribosomal protein L19; HAMAP: ribosomal protein L19; KEGG: ssm:Spirs_1876 ribosomal protein L19; PFAM: ribosomal protein L19 YP_004247327.1 KEGG: tde:TDE2305 hypothetical protein YP_004247328.1 PFAM: Cytidylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; HAMAP: Coenzyme A biosynthesis protein; KEGG: ssm:Spirs_1886 pantetheine-phosphate adenylyltransferase YP_004247329.1 TIGRFAM: ribosomal protein L32p; HAMAP: ribosomal protein L32p; KEGG: ssm:Spirs_1887 ribosomal protein L32; PFAM: ribosomal protein L32p YP_004247330.1 SMART: polyketide synthase, phosphopantetheine-binding; TIGRFAM: acyl carrier protein (ACP); KEGG: sta:STHERM_c10660 hypothetical protein; HAMAP: acyl carrier protein (ACP); PFAM: phosphopantetheine-binding YP_004247331.1 KEGG: ssm:Spirs_1889 ribonuclease III; PFAM: ribonuclease III; Double-stranded RNA-binding; TIGRFAM: ribonuclease III, bacterial; HAMAP: ribonuclease III, bacterial; SMART: ribonuclease III; Double-stranded RNA-binding YP_004247332.1 TIGRFAM: Uncharacterised protein family HDIG; PFAM: poly A polymerase, head domain; metal-dependent phosphohydrolase, HD subdomain; KEGG: ssm:Spirs_1890 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase, HD domain YP_004247333.1 TIGRFAM: isoleucyl-tRNA synthetase, class Ia; HAMAP: isoleucyl-tRNA synthetase, class Ia; KEGG: ssm:Spirs_1894 isoleucyl-tRNA synthetase YP_004247335.1 TIGRFAM: Regulatory protein, FmdB, PFAM: Regulatory protein, FmdB, SMART: Regulatory protein, FmdB YP_004247336.1 TIGRFAM: tryptophanyl-tRNA synthetase, class Ib; KEGG: cpy:Cphy_3480 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib YP_004247337.1 KEGG: ssm:Spirs_1783 ABC transporter periplasmic substrate-binding protein YP_004247338.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_1784 binding-protein-dependent transport systems inner membrane component YP_004247339.1 PFAM: ABC transporter-like; transport-associated OB, type 2; KEGG: ssm:Spirs_1785 ABC transporter; SMART: ATPase, AAA+ type, core YP_004247340.1 PFAM: alpha-D-phosphohexomutase, alpha/beta/alpha domain I; alpha-D-phosphohexomutase, alpha/beta/alpha domain II; KEGG: rrs:RoseRS_0222 phosphoglucomutase/phosphomannomutase alpha/beta/subunit YP_004247341.1 KEGG: has:Halsa_0822 glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase, C-terminal; glucose-6-phosphate dehydrogenase, NAD-binding YP_004247342.1 KEGG: syx:SynWH7803_1296 6-phosphogluconolactonase YP_004247343.1 PFAM: protein of unknown function DUF2229, CoA enzyme activase; KEGG: mla:Mlab_1388 hypothetical protein YP_004247344.1 KEGG: mla:Mlab_1387 chaperone protein DnaJ; TIGRFAM: CoA enzyme activase; PFAM: protein of unknown function DUF2229, CoA enzyme activase; ATPase, BadF/BadG/BcrA/BcrD type YP_004247345.1 SMART: THUMP; TIGRFAM: thiamine biosynthesis protein; KEGG: ssm:Spirs_1899 thiamine biosynthesis/tRNA modification protein ThiI; HAMAP: thiamine biosynthesis protein; PFAM: thiamine biosynthesis protein, C-terminal; THUMP YP_004247346.1 KEGG: sta:STHERM_c15870 cysteine desulfurase; PFAM: Aminotransferase, class V/cysteine desulfurase YP_004247347.1 KEGG: ssm:Spirs_1902 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB YP_004247348.1 KEGG: ssm:Spirs_1903 protein of unknown function DUF1605; PFAM: Domain of unknown function DUF1605; Helicase-associated domain; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase-associated domain YP_004247349.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; anticodon-binding; TIGRFAM: histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: histidyl-tRNA synthetase, class IIa, subgroup; KEGG: ssm:Spirs_1904 histidyl-tRNA synthetase YP_004247350.1 TIGRFAM: poly(A) polymerase, PcnB; KEGG: ssm:Spirs_1905 poly(A) polymerase; PFAM: poly A polymerase, head domain YP_004247351.1 KEGG: ssm:Spirs_1907 hypothetical protein YP_004247352.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165; KEGG: mac:MA2406 transposase YP_004247353.1 KEGG: ssm:Spirs_1909 electron transport complex, RnfABCDGE type, C subunit; TIGRFAM: electron transport complex, RnfC; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; 4Fe-4S binding domain YP_004247354.1 KEGG: ssm:Spirs_1910 electron transport complex, RnfABCDGE type, D subunit; TIGRFAM: electron transport complex, RnfD; PFAM: NADH-quinone reductase NQR2/RnfD YP_004247355.1 KEGG: ssm:Spirs_1911 FMN-binding domain protein; PFAM: FMN-binding; SMART: FMN-binding YP_004247356.1 KEGG: ssm:Spirs_1912 electron transport complex, RnfABCDGE type, E subunit; TIGRFAM: electron transport complex, RnfE; PFAM: electron transport complex, Rnf/Nqr YP_004247357.1 KEGG: ssm:Spirs_1913 electron transport complex, RnfABCDGE type, subunit alpha; TIGRFAM: electron transport complex, RnfA; PFAM: electron transport complex, Rnf/Nqr YP_004247358.1 KEGG: ssm:Spirs_1914 electron transport complex, RnfABCDGE type subunit beta; TIGRFAM: electron transport complex, RnfB; PFAM: Fe-S cluster; 4Fe-4S binding domain YP_004247359.1 PFAM: glycoside hydrolase, family 57, N-terminal; KEGG: ssm:Spirs_1915 4-alpha-glucanotransferase YP_004247362.1 TIGRFAM: cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; KEGG: ssm:Spirs_1921 signal recognition particle-docking protein FtsY; SMART: Signal recognition particle, SRP54 subunit, GTPase; ATPase, AAA+ type, core YP_004247364.1 KEGG: asu:Asuc_1431 LolC/E family lipoprotein releasing system, transmembrane protein; manually curated; PFAM: Domain of unknown function DUF214, ABC transporter permease YP_004247365.1 PFAM: ABC transporter-like; KEGG: tde:TDE2040 lipoprotein releasing system, ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004247366.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: ssm:Spirs_1925 protein of unknown function DUF214 YP_004247367.1 SMART: beta-lactamase-like; TIGRFAM: ribonuclease Z; KEGG: ssm:Spirs_1930 ribonuclease Z; HAMAP: ribonuclease Z; PFAM: beta-lactamase-like YP_004247369.1 PFAM: septum formation initiator YP_004247370.1 PFAM: Sua5/YciO/YrdC, N-terminal; KEGG: ssm:Spirs_1938 SUA5/YciO/YrdC/YwlC family protein YP_004247371.1 PFAM: Uncharacterised conserved protein UCP033563; KEGG: ssm:Spirs_1939 hypothetical protein YP_004247372.1 KEGG: ssm:Spirs_1940 thiamine pyrophosphokinase; TIGRFAM: Thiamin pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic domain YP_004247374.1 KEGG: tde:TDE1502 chorismate mutase; TIGRFAM: chorismate mutase, AroH class; PFAM: chorismate mutase, AroH class YP_004247375.1 KEGG: oih:OB3234 hypothetical protein YP_004247376.1 KEGG: ect:ECIAI39_3169 permease subunit YP_004247377.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: oih:OB3236 hypothetical protein YP_004247378.1 PFAM: Enolpyruvate transferase domain; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase; KEGG: cth:Cthe_3086 3-phosphoshikimate 1-carboxyvinyltransferase YP_004247379.1 KEGG: tnp:Tnap_1576 transcriptional regulator, LacI family; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004247380.1 PFAM: Uncharacterised protein family UPF0153; KEGG: sta:STHERM_c10760 hypothetical protein YP_004247381.1 KEGG: ssm:Spirs_2079 DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain YP_004247382.1 KEGG: ssm:Spirs_2078 RNA polymerase, sigma 70 subunit, RpoD subfamily; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 4 YP_004247383.1 PFAM: protein of unknown function DUF164; KEGG: ssm:Spirs_2077 protein of unknown function DUF164 YP_004247385.1 KEGG: ssm:Spirs_2070 radical SAM protein; PFAM: radical SAM; protein of unknown function DUF2344; SMART: Elongator protein 3/MiaB/NifB YP_004247386.1 KEGG: cpf:CPF_2589 GntR family transcriptional regulator; PFAM: Regulator of K+ conductance, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004247387.1 KEGG: ssm:Spirs_2069 MazG family protein; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; PFAM: NTP pyrophosphohydrolase MazG, catalytic core YP_004247388.1 KEGG: cth:Cthe_2969 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004247389.1 KEGG: dhd:Dhaf_2276 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004247390.1 KEGG: cpy:Cphy_3905 transporter protein YP_004247391.1 PFAM: glutamine amidotransferase, class-II; Sugar isomerase (SIS); TIGRFAM: glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: glucosamine-fructose-6-phosphate aminotransferase, isomerising; KEGG: amt:Amet_4299 glucosamine--fructose-6-phosphate aminotransferase, isomerizing YP_004247393.1 KEGG: ssm:Spirs_2058 hypotheticalprotein YP_004247394.1 KEGG: ssm:Spirs_2056 ribosomal protein S1; PFAM: ribosomal protein S1, RNA-binding domain; SMART: RNA-binding domain, S1 YP_004247395.1 TIGRFAM: cytidylate kinase; HAMAP: cytidylate kinase; KEGG: ssm:Spirs_2055 cytidylate kinase; PFAM: cytidylate kinase domain YP_004247396.1 TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: ssm:Spirs_2054 RNA-binding S4 domain protein; SMART: RNA-binding S4 YP_004247397.1 KEGG: ssm:Spirs_2053 chromosome segregation and condensation protein, ScpB; TIGRFAM: chromosome segregation/condensation protein ScpB, prokaryote; PFAM: chromosome segregation/condensation protein ScpB, prokaryote YP_004247398.1 PFAM: Prokaryotic chromosome segregation/condensation protein ScpA; KEGG: ssm:Spirs_2052 chromosome segregation and condensation protein ScpA YP_004247399.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA recombination and repair protein RecA; KEGG: ssm:Spirs_2051 RecA protein; HAMAP: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA YP_004247400.1 TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: dol:Dole_2227 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_004247401.1 PFAM: ribulose-phosphate 3-epimerase; manually curated; KEGG: tde:TDE2597 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase YP_004247402.1 KEGG: ssm:Spirs_2041 transcription elongation factor GreA; TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor, GreA/GreB, N-terminal; transcription elongation factor, GreA/GreB, C-terminal YP_004247403.1 PFAM: glycoside hydrolase, family 2, carbohydrate-binding; glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; glycoside hydrolase, family 2, TIM barrel; KEGG: sro:Sros_3323 beta-galactosidase YP_004247404.1 manually curated; TIGRFAM: Flagellin assembly, membrane protein MviN; KEGG: sta:STHERM_c11090 virulence factor MviN; PFAM: Flagellin assembly, membrane protein MviN YP_004247405.1 PFAM: queuine/other tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; queuine/other tRNA-ribosyltransferase; HAMAP: queuine tRNA-ribosyltransferase; KEGG: ssm:Spirs_2037 queuine tRNA-ribosyltransferase YP_004247406.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: ssm:Spirs_2036 permease YjgP/YjgQ family protein YP_004247407.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: sta:STHERM_c11120 hypothetical protein YP_004247408.1 PFAM: deoxyUTP pyrophosphatase domain; TIGRFAM: deoxyUTP pyrophosphatase; HAMAP: deoxyUTP pyrophosphatase; KEGG: cpc:Cpar_0747 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut YP_004247409.1 KEGG: ssm:Spirs_2033 polyribonucleotide nucleotidyltransferase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; ribosomal protein S1, RNA-binding domain; TIGRFAM: polyribonucleotide nucleotidyltransferase; HAMAP: polyribonucleotide nucleotidyltransferase; SMART: RNA-binding domain, S1; K Homology YP_004247410.1 KEGG: ssm:Spirs_2032 ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial-type; PFAM: ribosomal protein S15 YP_004247411.1 PFAM: FAD synthetase; KEGG: sta:STHERM_c11150 riboflavin biosynthesis protein RibF YP_004247412.1 TIGRFAM: tRNA pseudouridine synthase II, TruB; HAMAP: tRNA pseudouridine synthase II, TruB; KEGG: ssm:Spirs_2030 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II YP_004247413.1 TIGRFAM: ribosome-binding factor A; HAMAP: ribosome-binding factor A; KEGG: tde:TDE1105 ribosome-binding factor A; PFAM: ribosome-binding factor A YP_004247414.1 KEGG: ssm:Spirs_2028 translation initiation factor IF-2; TIGRFAM: translation initiation factor aIF-2, bacterial-like; Small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; translation initiation factor IF-2, N-terminal; translation elongation factor EFTu/EF1A, domain 2 YP_004247415.1 TIGRFAM: transcription termination factor NusA; PFAM: transcription factor NusA, N-terminal; KEGG: ssm:Spirs_2027 transcription termination factor NusA; SMART: RNA-binding domain, S1 YP_004247416.1 HAMAP: ribosome maturation factor RimP; KEGG: sta:STHERM_c11200 hypothetical protein YP_004247417.1 KEGG: tle:Tlet_0652 comFC protein YP_004247418.1 SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; manually curated; KEGG: ssm:Spirs_2024 DNA mismatch repair protein MutS; TIGRFAM: DNA mismatch repair protein MutS, type 1; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS, clamp YP_004247419.1 KEGG: ssm:Spirs_2022 outer membrane protein assembly complex, YaeT protein; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number YP_004247420.1 KEGG: ssm:Spirs_2021 protein of unknown function DUF490 YP_004247421.1 PFAM: thymidylate kinase; TIGRFAM: thymidylate kinase; HAMAP: thymidylate kinase; KEGG: tde:TDE2599 thymidylate kinase YP_004247422.1 TIGRFAM: Queuosine biosynthesis protein; HAMAP: Queuosine biosynthesis protein; KEGG: ssm:Spirs_2018 S-adenosylmethionine/tRNA-ribosyltransferase-iso merase; PFAM: Queuosine biosynthesis protein YP_004247423.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: ssm:Spirs_2017 Holliday junction DNA helicase RuvB; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal YP_004247424.1 TIGRFAM: Bacterial DNA recombination protein RuvA; HAMAP: Bacterial DNA recombination protein RuvA; KEGG: tde:TDE1863 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial YP_004247425.1 HAMAP: Crossover junction endodeoxyribonuclease RuvC; KEGG: ssm:Spirs_2015 crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC YP_004247426.1 TIGRFAM: protein of unknown function DUF28; HAMAP: protein of unknown function DUF28; KEGG: ssm:Spirs_2014 protein of unknown function DUF28; PFAM: protein of unknown function DUF28 YP_004247427.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM; HemN, C-terminal; KEGG: has:Halsa_1687 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_004247428.1 KEGG: ssm:Spirs_2011 signal peptidase I; TIGRFAM: peptidase S26A, signal peptidase I; PFAM: peptidase S24/S26A/S26B, conserved region YP_004247429.1 KEGG: ssm:Spirs_2010 protein of unknown function DUF323 YP_004247430.1 TIGRFAM: SsrA-binding protein; HAMAP: SsrA-binding protein; KEGG: ssm:Spirs_2009 SsrA-binding protein; PFAM: SsrA-binding protein YP_004247431.1 PFAM: Integrase, catalytic core, phage; KEGG: ssm:Spirs_2778 integrase YP_004247432.1 PFAM: Divalent ion symporter; KEGG: cth:Cthe_3129 citrate transporter YP_004247433.1 PFAM: metallo-dependent phosphatase; KEGG: sti:Sthe_1371 phosphodiesterase, MJ0936 family YP_004247434.1 KEGG: dat:HRM2_39260 CcaA; TIGRFAM: K+-dependent Na+/Ca+ exchanger-like; PFAM: Sodium/calcium exchanger membrane region YP_004247435.1 KEGG: mbu:Mbur_0627 silent information regulator protein Sir2; HAMAP: NAD-dependent histone deacetylase, silent information regulator Sir2; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2 YP_004247436.1 TIGRFAM: methylthiotransferase; tRNA-i(6)A37 modification enzyme MiaB; PFAM: methylthiotransferase, N-terminal; radical SAM; deoxyribonuclease/rho motif-related TRAM; KEGG: ssm:Spirs_2426 tRNA-i(6)A37 thiotransferase enzyme MiaB; SMART: Elongator protein 3/MiaB/NifB YP_004247437.1 HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: amu:Amuc_1641 methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_004247438.1 KEGG: ssm:Spirs_2430 hypothetical protein YP_004247440.1 KEGG: elm:ELI_2197 hypothetical protein; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004247441.1 KEGG: csh:Closa_4099 glycerophosphoryl diester phosphodiesterase; PFAM: glycerophosphoryl diester phosphodiesterase YP_004247442.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: gym:GYMC10_0490 binding-protein-dependent transport systems inner membrane component YP_004247443.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: gym:GYMC10_0489 binding-protein-dependent transport systems inner membrane component YP_004247444.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: gym:GYMC10_0488 extracellular solute-binding protein family 1 YP_004247445.1 KEGG: csh:Closa_0515 protein of unknown function DUF624; manually curated; PFAM: protein of unknown function DUF624 YP_004247447.1 KEGG: ssm:Spirs_2435 phosphoribosyl transferase domain protein YP_004247448.1 TIGRFAM: peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: ssm:Spirs_2437 methionine aminopeptidase, type I; PFAM: peptidase M24, structural domain YP_004247449.1 TIGRFAM: NusB antitermination factor; HAMAP: NusB antitermination factor; KEGG: btu:BT0107 transcription antitermination protein NusB; PFAM: NusB/RsmB/TIM44 YP_004247450.1 PFAM: peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: ssm:Spirs_2440 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004247451.1 KEGG: ssm:Spirs_2441 hypothetical protein YP_004247452.1 KEGG: tde:TDE1238 preprotein translocase subunit SecG; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit YP_004247453.1 TIGRFAM: triosephosphate isomerase; KEGG: sta:STHERM_c09810 triosephosphate isomerase; PFAM: triosephosphate isomerase YP_004247454.1 HAMAP: phosphoglycerate kinase; KEGG: sta:STHERM_c09800 phosphoglycerate kinase; PFAM: phosphoglycerate kinase YP_004247455.1 SMART: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: ssm:Spirs_2445 glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004247456.1 PFAM: cystathionine beta-synthase, core; transporter-associated domain; KEGG: ssm:Spirs_2447 transporter-associated region YP_004247457.1 PFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; manually curated; TIGRFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; KEGG: tde:TDE1242 metalloprotease; HAMAP: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted YP_004247458.1 TIGRFAM: Uncharacterised protein family HDIG; PFAM: metal-dependent phosphohydrolase, HD subdomain; KEGG: ssm:Spirs_2449 7TM receptor with intracellular metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase, HD domain YP_004247459.1 PFAM: PhoH-like protein; KEGG: ssm:Spirs_2450 PhoH family protein YP_004247460.1 KEGG: ssm:Spirs_2451 organic solvent tolerance protein OstA YP_004247461.1 TIGRFAM: excinuclease ABC subunit A; HAMAP: excinuclease ABC, subunit alpha; KEGG: ssm:Spirs_2452 excinuclease ABC subunit A; PFAM: ABC transporter-like YP_004247462.1 TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; KEGG: sta:STHERM_c12020 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type YP_004247464.1 KEGG: csh:Closa_3409 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; methylguanine DNA methyltransferase, ribonuclease-like YP_004247465.1 KEGG: ssm:Spirs_2455 V-type ATP synthase subunit K YP_004247466.1 PFAM: ATPase, V0/A0 complex, 116kDa subunit; KEGG: ssm:Spirs_2456 V-type ATPase 116 kDa subunit YP_004247467.1 KEGG: ssm:Spirs_2457 V-type ATPase, D subunit; TIGRFAM: ATPase, V1/A1 complex, subunit D; PFAM: ATPase, V1/A1 complex, subunit D YP_004247468.1 KEGG: ssm:Spirs_2458 H+transporting two-sector ATPase alpha/subunit beta central region; HAMAP: V-type ATP synthase regulatory subunit B/beta; PFAM: ATPase, alpha/subunit beta, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/subunit beta, N-terminal YP_004247469.1 HAMAP: V-type ATP synthase catalytic subunit A/alpha; KEGG: ssm:Spirs_2459 H+transporting two-sector ATPase alpha/beta subunit central region; PFAM: ATPase, alpha/subunit beta, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/subunit beta, N-terminal YP_004247470.1 KEGG: ssm:Spirs_2460 hypothetical protein YP_004247471.1 KEGG: tde:TDE1381 V-type ATP synthase subunit E YP_004247474.1 TIGRFAM: uridine phosphorylase; KEGG: spa:M6_Spy1599 uridine phosphorylase; PFAM: nucleoside phosphorylase domain YP_004247475.1 KEGG: dhd:Dhaf_1087 hypothetical protein YP_004247476.1 KEGG: mxa:MXAN_0975 hypothetical protein YP_004247477.1 KEGG: ssm:Spirs_2465 MutS2 family protein; PFAM: DNA mismatch repair protein MutS, C-terminal; Smr protein/MutS2 C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; Smr protein/MutS2 C-terminal YP_004247478.1 TIGRFAM: ribosome biogenesis GTPase RsgA, HAMAP: ribosome biogenesis GTPase RsgA, KEGG: sta:STHERM_c17030 GTPase YjeQ; PFAM: ribosome biogenesis GTPase RsgA YP_004247479.1 PFAM: Pentapeptide repeat; KEGG: ssm:Spirs_2468 pentapeptide repeat protein YP_004247480.1 KEGG: ssm:Spirs_2469 hypothetical protein; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004247481.1 KEGG: deh:cbdb_A1328 ribosomal large subunit pseudouridine synthase D; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F YP_004247483.1 KEGG: ssm:Spirs_2472 alanine racemase domain protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: alanine racemase, N-terminal YP_004247484.1 PFAM: protein of unknown function DUF1113, TMEM229; KEGG: elm:ELI_1015 membrane protein YP_004247485.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-3; KEGG: elm:ELI_1742 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted YP_004247486.1 KEGG: elm:ELI_1158 IMP dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; cystathionine beta-synthase, core YP_004247487.1 PFAM: glycosyl hydrolase, family 13, catalytic domain; KEGG: sds:SDEG_1899 alpha amylase catalytic region; SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain YP_004247488.1 KEGG: ssm:Spirs_0925 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004247489.1 TIGRFAM: adenylate kinase, subfamily; HAMAP: adenylate kinase; KEGG: ssm:Spirs_1529 adenylate kinase; PFAM: adenylate kinase; adenylate kinase, active site lid domain YP_004247490.1 KEGG: ssm:Spirs_1527 phosphoribosyl transferase domain-containing protein YP_004247492.1 PFAM: Chromate transporter; KEGG: pmo:Pmob_1095 chromate transporter YP_004247493.1 KEGG: aoe:Clos_2676 chromate transporter; manually curated; PFAM: Chromate transporter YP_004247494.1 HAMAP: ribonuclease H; KEGG: tcx:Tcr_0928 ribonuclease H; PFAM: ribonuclease H domain YP_004247495.1 PFAM: Periplasmic binding protein; KEGG: sta:STHERM_c21080 hypothetical protein YP_004247496.1 PFAM: ABC transporter permease; KEGG: tte:TTE0373 ABC-type cobalamin/Fe3+-siderophores transporters, permeases YP_004247497.1 PFAM: ABC transporter-like; KEGG: cbh:CLC_1377 iron chelate ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004247498.1 KEGG: acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004247500.1 KEGG: brm:Bmur_0817 oxidoreductase domain protein; PFAM: oxidoreductase, N-terminal YP_004247501.1 PFAM: Domain of unknown function DUF336; KEGG: mrb:Mrub_1747 hypothetical protein YP_004247502.1 PFAM: adenylate cyclase; KEGG: ssm:Spirs_2340 adenylyl cyclase CyaB YP_004247503.1 KEGG: ssm:Spirs_2341 hypothetical protein YP_004247504.1 KEGG: DNA-cytosine methyltransferase; TIGRFAM: C-5 cytosine methyltransferase; PFAM: C-5 cytosine methyltransferase YP_004247505.1 PFAM: Abortive phage infection; KEGG: aba:acid345_4269 hypothetical protein YP_004247506.1 KEGG: oih:OB0176 hypothetical protein YP_004247507.1 PFAM: endonuclease, Z1 domain; KEGG: aba:acid345_4267 endonuclease YP_004247508.1 KEGG: ATP-binding region ATPase domain-containing protein YP_004247509.1 PFAM: protein of unknown function DUF2082, nucleic-acid-binding, Zn-ribbon domain; KEGG: cbk:CLL_A1997 hypothetical protein YP_004247510.1 manually curated; TIGRFAM: 2',5' RNA ligase; KEGG: cbl:CLK_2215 2'-5' RNA ligase; PFAM: phosphoesterase, HXTX YP_004247511.1 PFAM: methyltransferase type 11; KEGG: cbt:CLH_2444 methyltransferase YP_004247513.1 KEGG: eel:EUBELI_00570 hypothetical protein YP_004247514.1 KEGG: csh:Closa_0594 flavodoxin; TIGRFAM: Flavodoxin, short chain; PFAM: Flavodoxin/nitric oxide synthase YP_004247515.1 TIGRFAM: agmatinase; KEGG: dds:Ddes_0074 agmatinase; PFAM: Ureohydrolase YP_004247516.1 KEGG: syn:sll0873 carboxynorspermidine decarboxylase; TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, C-terminal YP_004247517.1 PFAM: saccharopine dehydrogenase / Homospermidine synthase; KEGG: carboxynorspermidine dehydrogenase YP_004247518.1 TIGRFAM: arginine decarboxylase; KEGG: cce:Ccel_1119 arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal YP_004247519.1 KEGG: aoe:Clos_0564 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein YP_004247520.1 KEGG: aoe:Clos_0565 hypothetical protein YP_004247521.1 PFAM: Phage Gp37Gp68; KEGG: elm:ELI_3917 hypothetical protein YP_004247522.1 KEGG: amt:Amet_3609 5'-nucleotidase domain-containing protein; PFAM: 5'-nucleotidase, C-terminal; metallo-dependent phosphatase YP_004247523.1 KEGG: ooe:OEOE_1304 hypothetical protein YP_004247524.1 KEGG: clj:CLJU_c17770 epimerase; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein YP_004247525.1 PFAM: extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: ssm:Spirs_3882 extradiol ring-cleavage dioxygenase class III protein subunit B YP_004247526.1 KEGG: cac:CA_C3508 aminopeptidase YP_004247527.1 PFAM: protein of unknown function DUF72; KEGG: hypothetical protein YP_004247528.1 TIGRFAM: glycoside hydrolase, family 77; KEGG: ssm:Spirs_4115 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77 YP_004247529.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: cst:CLOST_1213 maltose transporter amyc YP_004247530.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ccb:Clocel_0514 binding-protein-dependent transport systems inner membrane component YP_004247531.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ccb:Clocel_0513 extracellular solute-binding protein family 1 YP_004247533.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: ssm:Spirs_4224 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004247534.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: gym:GYMC10_0465 extracellular solute-binding protein family 1 YP_004247535.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: binding-protein-dependent transporters inner membrane component YP_004247536.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: gym:GYMC10_0467 binding-protein-dependent transport systems inner membrane component YP_004247537.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; extracellular solute-binding protein, family 3; PAS fold-4; metal-dependent phosphohydrolase, HD subdomain; KEGG: cbb:CLD_3030 sensory box-containing diguanylate cyclase; SMART: Diguanylate cyclase, predicted; extracellular solute-binding protein, family 3; metal-dependent phosphohydrolase, HD domain YP_004247538.1 TIGRFAM: PAS; PFAM: PAS fold; PAS fold-4; KEGG: signal transduction histidine kinase, nitrogen specific, NtrB; SMART: PAS; PAC motif YP_004247539.1 KEGG: cpe:CPE0723 HAD hydrolase, IIB family; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3 YP_004247540.1 KEGG: pdi:BDI_1740 catalase; PFAM: catalase-related subgroup; catalase-related immune responsive YP_004247541.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: syn:sll1687 hypothetical protein; SMART: Diguanylate cyclase, predicted YP_004247542.1 PFAM: protein of unknown function DUF72; KEGG: ssm:Spirs_4127 protein of unknown function DUF72 YP_004247543.1 KEGG: pca:Pcar_1740 nucleotidyltransferase/DNA polymerase; PFAM: DNA-repair protein, UmuC-like YP_004247544.1 TIGRFAM: DNA polymerase III subunit alpha; KEGG: dol:Dole_0237 DNA polymerase III subunit alpha; PFAM: Bacterial DNA polymerase III, subunit alpha; Nucleic acid binding, OB-fold, tRNA/helicase-type YP_004247545.1 PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; KEGG: ssm:Spirs_0241 DNA photolyase FAD-binding protein YP_004247546.1 manually curated; KEGG: elm:ELI_0829 hypothetical protein YP_004247547.1 PFAM: FAD dependent oxidoreductase; KEGG: hypothetical protein YP_004247548.1 KEGG: dhd:Dhaf_4703 transcriptional regulator YP_004247549.1 PFAM: NUDIX hydrolase domain YP_004247550.1 KEGG: amt:Amet_1428 helix-turn-helix domain-containing protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004247551.1 KEGG: bbe:BBR47_32420 hypothetical protein YP_004247552.1 KEGG: pmo:Pmob_0635 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004247553.1 KEGG: tmt:Tmath_1426 purine or other phosphorylase family 1; PFAM: nucleoside phosphorylase domain YP_004247554.1 PFAM: Initiation factor 2B-related; TIGRFAM: translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; Initiation factor 2B alpha/beta/delta; HAMAP: translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; KEGG: pmo:Pmob_0639 aIF-2BI family translation initiation factor YP_004247555.1 PFAM: Basic membrane lipoprotein; KEGG: cpy:Cphy_2034 basic membrane lipoprotein YP_004247556.1 PFAM: ABC transporter-like; KEGG: cpy:Cphy_2035 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004247557.1 PFAM: ABC transporter permease; KEGG: cpy:Cphy_2036 inner-membrane translocator YP_004247558.1 PFAM: ABC transporter permease; KEGG: cpy:Cphy_2037 inner-membrane translocator YP_004247560.1 PFAM: peptidase S41; KEGG: ctc:CTC01801 hypothetical protein YP_004247561.1 KEGG: btu:BT0034 hypothetical protein YP_004247563.1 KEGG: ccb:Clocel_0408 hypothetical protein YP_004247565.1 PFAM: metallo-dependent phosphatase; KEGG: tde:TDE1698 serine/threonine protein phosphatase family protein YP_004247566.1 KEGG: sus:acid_1464 hypothetical protein YP_004247567.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; Rhodanese-like; KEGG: CoA-disulfide reductase; SMART: Rhodanese-like YP_004247569.1 KEGG: afl:Aflv_2632 IstB-like ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004247570.1 PFAM: Integrase, catalytic core; KEGG: tte:TTE1156 integrase core subunit YP_004247571.1 KEGG: bth:BT_1796 hypothetical protein YP_004247572.1 KEGG: dol:Dole_0145 hypothetical protein YP_004247574.1 KEGG: str:Sterm_1842 hypothetical protein YP_004247575.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: san:gbs0028 GNAT family acetyltransferase YP_004247576.1 KEGG: ccb:Clocel_1148 heroin esterase YP_004247578.1 PFAM: Auxin efflux carrier; KEGG: dtu:Dtur_0291 hypothetical protein YP_004247579.1 TIGRFAM: PAS; Uncharacterised protein family HDIG; PFAM: metal-dependent phosphohydrolase, HD subdomain; PAS fold; KEGG: dak:DaAHT2_2363 PAS/PAC sensor protein; SMART: metal-dependent phosphohydrolase, HD domain; PAS; PAC motif YP_004247580.1 KEGG: ssm:Spirs_1956 cell wall/surface repeat protein; TIGRFAM: Listeria/Bacterioides repeat; PFAM: Listeria/Bacterioides repeat YP_004247582.1 KEGG: ele:Elen_0282 hypothetical protein YP_004247583.1 KEGG: ssm:Spirs_1956 cell wall/surface repeat protein; TIGRFAM: Listeria/Bacterioides repeat; PFAM: Listeria/Bacterioides repeat YP_004247584.1 PFAM: DNA helicase, UvrD/REP type; KEGG: abb:ABBFA_003093 ATP-dependent DNA helicase PcrA YP_004247585.1 PFAM: lactonase; KEGG: ppm:PPSC2_c2269 6-phosphogluconolactonase YP_004247587.1 KEGG: sta:STHERM_c13590 transcriptional regulatory protein; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004247588.1 KEGG: ssm:Spirs_3164 hypothetical protein YP_004247589.1 KEGG: ssm:Spirs_3165 ABC transporter protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004247590.1 TIGRFAM: Diaminobutyrate-2-oxoglutarate transaminase; KEGG: aci:ACIAD1210 diaminobutyrate--2-oxoglutarate aminotransferase; PFAM: Aminotransferase class-III YP_004247591.1 KEGG: bpu:BPUM_1020 diaminobutyrate decarboxylase; PFAM: pyridoxal phosphate-dependent decarboxylase YP_004247592.1 KEGG: sgo:SGO_1195 hypothetical protein YP_004247593.1 KEGG: sds:SDEG_1002 hypothetical protein YP_004247594.1 PFAM: protein of unknown function DUF161; KEGG: aco:Amico_1695 protein of unknown function DUF161 YP_004247595.1 KEGG: sta:STHERM_c08520 hypothetical protein YP_004247596.1 PFAM: glycoside hydrolase, family 43; KEGG: sta:STHERM_c08510 hypothetical protein YP_004247599.1 PFAM: beta-lactamase-related; KEGG: lby:Lbys_1523 beta-lactamase YP_004247600.1 KEGG: sta:STHERM_c21680 hypothetical protein YP_004247601.1 PFAM: Acriflavin resistance protein; KEGG: sta:STHERM_c21670 acriflavine resistance protein YP_004247602.1 KEGG: ssm:Spirs_0037 efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004247603.1 PFAM: Outer membrane efflux protein; KEGG: ssm:Spirs_0898 outer membrane efflux protein YP_004247604.1 SMART: Diguanylate cyclase, predicted; manually curated; TIGRFAM: Diguanylate cyclase, predicted; KEGG: dhd:Dhaf_0017 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted YP_004247605.1 manually curated; PFAM: Cyclic nucleotide-binding domain; KEGG: app:CAP2UW1_2477 cyclic nucleotide-binding protein; SMART: Cyclic nucleotide-binding domain YP_004247606.1 PFAM: Major facilitator superfamily MFS-1; KEGG: cfl:Cfla_0874 major facilitator superfamily MFS_1 YP_004247607.1 KEGG: hla:Hlac_3237 hypothetical protein YP_004247608.1 PFAM: metallo-dependent phosphatase; KEGG: sti:Sthe_2590 metallophosphoesterase YP_004247609.1 KEGG: esi:Exig_1460 alcohol dehydrogenase; PFAM: alcohol dehydrogenase, C-terminal; alcohol dehydrogenase GroES-like; SMART: polyketide synthase, enoylreductase YP_004247610.1 PFAM: hypothetical protein; KEGG: abortive infection protein YP_004247611.1 SMART: Iron hydrogenase, small subunit-like; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; TIGRFAM: Iron hydrogenase, subset; KEGG: dae:Dtox_0172 hydrogenase, Fe-only; PFAM: Iron hydrogenase, large subunit, C-terminal; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; 4Fe-4S binding domain; Iron hydrogenase, small subunit-like YP_004247612.1 PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ssm:Spirs_0475 respiratory-chain NADH dehydrogenase domain 51 kDa subunit; SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YP_004247613.1 PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: hor:Hore_01790 NADH dehydrogenase I subunit E YP_004247614.1 KEGG: elm:ELI_2139 hypothetical protein YP_004247616.1 KEGG: shi:Shel_10460 sortase-like acyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain YP_004247617.1 KEGG: mif:Metin_0755 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal; SUA5 YP_004247618.1 KEGG: flavodoxin-like protein YP_004247620.1 KEGG: ssm:Spirs_2696 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004247621.1 KEGG: ssm:Spirs_2695 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004247622.1 KEGG: gym:GYMC10_4999 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004247623.1 KEGG: sme:SM_b20299 N-acetylneuraminate lyase; PFAM: dihydrodipicolinate synthetase YP_004247624.1 KEGG: rlg:Rleg_0441 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004247625.1 KEGG: csa:Csal_2978 TRAP dicarboxylate transporter-DctM subunit; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit YP_004247626.1 KEGG: hel:HELO_3283 TRAP transporter small transmembrane protein YP_004247627.1 KEGG: gct:GC56T3_1465 TRAP dicarboxylate transporter DctP subunit; TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: extracellular solute-binding protein, family 7, bacteria YP_004247628.1 KEGG: chd:Calhy_2202 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004247629.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ccb:Clocel_2930 hypothetical protein YP_004247630.1 PFAM: UbiA prenyltransferase; KEGG: sta:STHERM_c19810 hypothetical protein YP_004247631.1 KEGG: amt:Amet_0779 TRAP transporter solute receptor TAXI family protein; TIGRFAM: TRAP transporter solute receptor, TAXI family; PFAM: extracellular solute-binding protein, family 3 YP_004247632.1 PFAM: protein of unknown function DUF1850; KEGG: bha:BH2946 hypothetical protein YP_004247633.1 KEGG: bpf:BpOF4_02395 hypothetical protein; TIGRFAM: TRAP transporter 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004247635.1 KEGG: hoh:Hoch_2572 hypothetical protein YP_004247636.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dhd:Dhaf_0017 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004247638.1 PFAM: Acriflavin resistance protein; KEGG: tmz:Tmz1t_3537 acriflavin resistance protein YP_004247639.1 KEGG: cpc:Cpar_0925 efflux transporter RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD YP_004247640.1 KEGG: amr:AM1_0730 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004247641.1 PFAM: esterase; KEGG: gym:GYMC10_5948 esterase YP_004247643.1 PFAM: ABC transporter-like; transport-associated OB, type 2; KEGG: aco:Amico_1575 ABC transporter; SMART: ATPase, AAA+ type, core YP_004247644.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: aco:Amico_1576 binding-protein-dependent transport systems inner membrane component YP_004247645.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: aco:Amico_1577 extracellular solute-binding protein family 1 YP_004247647.1 PFAM: 2-keto-3-deoxygluconate permease; KEGG: toc:Toce_0652 2-keto-3-deoxygluconate permease (TC 2.A.10.1.1) YP_004247648.1 PFAM: protein of unknown function DUF2088; KEGG: pmo:Pmob_0129 hypothetical protein YP_004247649.1 PFAM: pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; TIGRFAM: pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; HAMAP: pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: ipo:Ilyop_0077 4-hydroxythreonine-4-phosphate dehydrogenase YP_004247650.1 PFAM: protein of unknown function, DUF1537; KEGG: lcz:LCAZH_2706 hypothetical protein YP_004247651.1 KEGG: ssm:Spirs_2352 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD subdomain; SMART: metal-dependent phosphohydrolase, HD domain YP_004247652.1 PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase; KEGG: ssm:Spirs_2353 PP-loop domain protein YP_004247653.1 KEGG: ssm:Spirs_2359 hypothetical protein YP_004247654.1 KEGG: dya:Dyak_GE24546 GE24546 gene product from transcript GE24546-RA YP_004247655.1 SMART: MutL, C-terminal, dimerisation; TIGRFAM: DNA mismatch repair protein, N-terminal; KEGG: ssm:Spirs_2361 DNA mismatch repair protein MutL; HAMAP: DNA mismatch repair protein, MutL; PFAM: DNA mismatch repair protein, C-terminal; ATPase-like, ATP-binding domain; MutL, C-terminal, dimerisation YP_004247657.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: ssm:Spirs_2368 acyltransferase YP_004247658.1 PFAM: dihydroorotate dehydrogenase, class 1/ 2; KEGG: ssm:Spirs_2131 dihydroorotate oxidase YP_004247659.1 KEGG: ssm:Spirs_2136 transcriptional regulator, AsnC family; PFAM: transcription regulator AsnC-type, C-terminal; SMART: transcription regulator AsnC-type YP_004247660.1 PFAM: Aminotransferase, class V/cysteine desulfurase; TIGRFAM: phosphoserine aminotransferase, subgroup; HAMAP: phosphoserine aminotransferase; KEGG: ssm:Spirs_2137 phosphoserine aminotransferase YP_004247661.1 KEGG: ssm:Spirs_2138 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004247662.1 TIGRFAM: ribosomal protein S21; HAMAP: ribosomal protein S21; KEGG: ssm:Spirs_2139 ribosomal protein S21; PFAM: ribosomal protein S21 YP_004247663.1 KEGG: ssm:Spirs_2141 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: phosphoesterase, RecJ-like; phosphoesterase, DHHA1 YP_004247664.1 TIGRFAM: recombination protein O, RecO; HAMAP: recombination protein O, RecO; KEGG: ssm:Spirs_2143 DNA repair protein RecO; PFAM: recombination protein O, RecO YP_004247665.1 KEGG: mxa:MXAN_4735 hypothetical protein YP_004247666.1 manually curated YP_004247667.1 TIGRFAM: Bacterial carbamate kinase; KEGG: bbe:BBR47_45090 carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_004247668.1 KEGG: azo:azo0684 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004247669.1 PFAM: extracellular solute-binding protein, family 7, bacteria; KEGG: sta:STHERM_c04190 transporter YP_004247670.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: chd:Calhy_0506 tripartite ATP-independent periplasmic transporter DctQ component YP_004247671.1 KEGG: sta:STHERM_c04210 transporter; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004247672.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: cdl:CDR20291_0486 aldo/keto reductase YP_004247673.1 PFAM: dihydrodipicolinate synthetase; TIGRFAM: dihydrodipicolinate synthase subfamily; HAMAP: dihydrodipicolinate synthase; KEGG: ant:Arnit_1025 dihydrodipicolinate synthase YP_004247674.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: sta:STHERM_c04220 3-oxoacyl-[acyl-carrier-protein] reductase; SMART: polyketide synthase/Fatty acid synthase, KR YP_004247675.1 KEGG: mma:MM_1800 transporter; TIGRFAM: protein of unknown function DUF165; PFAM: protein of unknown function DUF165 YP_004247676.1 SMART: peptidase S16, lon N-terminal; ATPase, AAA+ type, core; TIGRFAM: peptidase S16, ATP-dependent protease La; KEGG: ssm:Spirs_2144 ATP-dependent protease La; PFAM: peptidase S16, Lon C-terminal; peptidase S16, lon N-terminal; ATPase, AAA-type, core YP_004247677.1 PFAM: peptidase U32; KEGG: sta:STHERM_c16410 hypothetical protein YP_004247678.1 KEGG: ppn:Palpr_0064 hypothetical protein YP_004247679.1 PFAM: glycosyl transferase, family 2; KEGG: glycosyltransferase YP_004247680.1 KEGG: pne:Pnec_1462 hypothetical protein YP_004247681.1 PFAM: nitroreductase-like; KEGG: tva:TVAG_499730 nitroreductase family protein YP_004247682.1 TIGRFAM: valyl-tRNA synthetase; HAMAP: valyl-tRNA synthetase; KEGG: ssm:Spirs_2147 valyl-tRNA synthetase YP_004247683.1 KEGG: ssm:Spirs_2152 transmembrane anti-sigma factor YP_004247684.1 KEGG: ssm:Spirs_2153 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2 YP_004247685.1 TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; KEGG: sta:STHERM_c18260 hypothetical protein; PFAM: Cysteinyl-tRNA synthetase, class Ia YP_004247686.1 PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase N-terminal; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: dap:Dacet_0478 UDP-N-acetylenolpyruvoylglucosamine reductase YP_004247688.1 PFAM: acetate/butyrate kinase; TIGRFAM: acetate kinase; HAMAP: acetate kinase; KEGG: ssm:Spirs_2158 acetate kinase YP_004247689.1 KEGG: dol:Dole_1930 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004247691.1 TIGRFAM: Conserved hypothetical protein CHP03172; KEGG: ssm:Spirs_2937 hypothetical protein YP_004247692.1 KEGG: ppr:PBPRA1985 protein YqeB; TIGRFAM: Selenium-dependent molybdenum hydroxylase system protein, YqeB family; PFAM: XdhC- CoxI YP_004247693.1 KEGG: vpr:Vpar_0342 cysteine desulfurase family protein; PFAM: Aminotransferase, class V/cysteine desulfurase YP_004247694.1 PFAM: XdhC- CoxI; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; KEGG: cbk:CLL_A0651 xanthine dehydrogenase accessory factor YP_004247695.1 PFAM: methicillin resistance protein; KEGG: phe:Phep_0801 methicillin resistance protein YP_004247696.1 KEGG: ssm:Spirs_1696 multi-sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; PAS YP_004247697.1 KEGG: clj:CLJU_c12430 phosphate transporter protein; TIGRFAM: PhoU; PFAM: PhoU YP_004247698.1 SMART: ATPase, AAA+ type, core; TIGRFAM: phosphate transporter permease 1; KEGG: rca:Rcas_0586 phosphate ABC transporter ATPase; PFAM: ABC transporter-like YP_004247699.1 KEGG: hau:Haur_3999 phosphate ABC transporter inner membrane subunit PstA; TIGRFAM: phosphate transporter permease 2; PFAM: Binding-protein-dependent transporters inner membrane component YP_004247700.1 KEGG: hau:Haur_3998 phosphate ABC transporter inner membrane subunit PstC; TIGRFAM: phosphate ABC transporter permease PstC; PFAM: Binding-protein-dependent transporters inner membrane component YP_004247701.1 TIGRFAM: phosphate binding protein; KEGG: rrs:RoseRS_4157 phosphate binding protein YP_004247702.1 PFAM: desulfoferrodoxin Dfx; KEGG: cce:Ccel_3474 desulfoferrodoxin YP_004247703.1 KEGG: afn:Acfer_1559 isochorismatase hydrolase; manually curated; PFAM: Isochorismatase-like YP_004247704.1 KEGG: ssm:Spirs_2755 nucleoside diphosphate kinase; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase YP_004247705.1 KEGG: ddf:DEFDS_0080 hypothetical protein YP_004247706.1 KEGG: jan:Jann_2668 LCCL; PFAM: LCCL; SMART: LCCL YP_004247707.1 PFAM: hypothetical protein; KEGG: bbe:BBR47_28850 membrane-bound metalloprotease YP_004247708.1 KEGG: ckr:CKR_2289 hypothetical protein YP_004247709.1 KEGG: dhd:Dhaf_0280 hypothetical protein YP_004247710.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: cdf:CD1476 signaling protein; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted YP_004247711.1 PFAM: Auxin efflux carrier; KEGG: ssm:Spirs_3161 hypothetical protein YP_004247712.1 KEGG: tte:TTE1096 polyferredoxin YP_004247713.1 KEGG: dsy:DSY0368 hypothetical protein; PFAM: Protease inhibitor I4, serpin; SMART: Protease inhibitor I4, serpin YP_004247714.1 KEGG: sta:STHERM_c21630 xylose-proton symporter; TIGRFAM: Sodium:galactoside symporter; PFAM: Major facilitator superfamily MFS-1 YP_004247715.1 manually curated; PFAM: phospholipid/glycerol acyltransferase; KEGG: syn:slr2060 hypothetical protein; SMART: phospholipid/glycerol acyltransferase YP_004247716.1 KEGG: ssm:Spirs_3802 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004247717.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ccb:Clocel_2529 major facilitator superfamily MFS_1 YP_004247718.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: aldo/keto reductase YP_004247719.1 PFAM: ADP-ribosylation/crystallin J1; KEGG: plt:Plut_0825 ribosylglycohydrolase YP_004247720.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: oxidoreductase YP_004247721.1 TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: ssm:Spirs_2762 ATP-dependent DNA helicase, RecQ family; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004247722.1 KEGG: dth:DICTH_1623 transcriptional regulator, LacI family; PFAM: HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004247723.1 TIGRFAM: galactose-1-phosphate uridyl transferase, class I; KEGG: gfo:GFO_2147 galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase, N-terminal; galactose-1-phosphate uridyl transferase, C-terminal YP_004247724.1 KEGG: galK; galactokinase; PFAM: galactokinase galactose-binding domain; GHMP kinase YP_004247726.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165; KEGG: mac:MA2406 transposase YP_004247727.1 PFAM: PKD domain; KEGG: cpi:Cpin_4113 hypothetical protein YP_004247729.1 TIGRFAM: threonine synthase; KEGG: threonine synthase; PFAM: pyridoxal phosphate-dependent enzyme subunit beta YP_004247730.1 TIGRFAM: aspartate kinase domain; KEGG: ssm:Spirs_2770 aspartate kinase; PFAM: homoserine dehydrogenase, catalytic; aspartate/homoserine dehydrogenase, NAD-binding; aspartate/glutamate/uridylate kinase; Amino acid-binding ACT YP_004247731.1 TIGRFAM: ribosomal protein L28; HAMAP: ribosomal protein L28; KEGG: ssm:Spirs_2771 ribosomal protein L28; PFAM: ribosomal protein L28 YP_004247733.1 PFAM: HhH-GPD domain; endonuclease III-like, iron-sulphur cluster loop motif; KEGG: sta:STHERM_c20610 endonuclease III; SMART: HhH-GPD domain; endonuclease III-like, iron-sulphur cluster loop motif YP_004247734.1 KEGG: amt:Amet_0500 transcriptional regulator IclR-like protein; PFAM: transcription regulator IclR, C-terminal; transcription regulator IclR, N-terminal; SMART: transcription regulator IclR, N-terminal YP_004247735.1 KEGG: PfkB domain-containing protein; PFAM: carbohydrate/purine kinase YP_004247736.1 KEGG: oih:OB2703 2-keto-3-deoxy-6-phospho-gluconate aldolase; TIGRFAM: KDPG/KHG aldolase; PFAM: KDPG/KHG aldolase YP_004247737.1 KEGG: vap:Vapar_1719 hypothetical protein YP_004247738.1 KEGG: dhd:Dhaf_2074 hypothetical protein YP_004247739.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: ipo:Ilyop_2144 protein of unknown function DUF112 transmembrane YP_004247740.1 KEGG: msv:Mesil_3118 transcriptional regulator YP_004247741.1 PFAM: manganese/iron superoxide dismutase, C-terminal; manganese/iron superoxide dismutase, N-terminal; KEGG: str:Sterm_3359 superoxide dismutase YP_004247742.1 KEGG: ssm:Spirs_0407 hypothetical protein YP_004247743.1 KEGG: xcb:XC_0343 hypothetical protein YP_004247745.1 PFAM: ABC transporter-like; transport-associated OB, type 2; KEGG: tpp:TPASS_0652 spermidine/putrescine ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004247746.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: tpp:TPASS_0653 spermidine/putrescine ABC transporter permease YP_004247747.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: tpp:TPASS_0654 spermidine/putrescine ABC transporter permease YP_004247748.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: tpp:TPASS_0655 spermidine/putrescine ABC transporter periplasmic binding protein YP_004247749.1 KEGG: mmq:MmarC5_1465 sodium/proline symporter; TIGRFAM: Sodium/proline symporter; Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter YP_004247750.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: cpy:Cphy_0010 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004247751.1 PFAM: homoserine O-succinyltransferase; TIGRFAM: homoserine O-succinyltransferase; HAMAP: homoserine O-succinyltransferase; KEGG: metA; homoserine O-succinyltransferase YP_004247752.1 KEGG: MarR family transcriptional regulator; PFAM: nucleoside phosphorylase domain YP_004247753.1 TIGRFAM: Initiation factor 2B alpha/beta/delta; KEGG: ssm:Spirs_3887 eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: Initiation factor 2B-related YP_004247754.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: ipo:Ilyop_0137 CMP/dCMP deaminase zinc-binding protein YP_004247755.1 PFAM: peptidyl-prolyl cis-trans isomerase, FKBP-type; peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; KEGG: sbp:Sbal223_3398 FKBP-type peptidyl-prolyl isomerase domain protein YP_004247756.1 KEGG: mta:Moth_0073 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004247758.1 KEGG: cpy:Cphy_3706 hypothetical protein YP_004247759.1 PFAM: aldose 1-epimerase; KEGG: cpf:CPF_0279 aldose 1-epimerase YP_004247760.1 HAMAP: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; KEGG: cpy:Cphy_1368 glutamyl-tRNA reductase; PFAM: cyclase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal YP_004247761.1 PFAM: 8-oxoguanine DNA glycosylase, N-terminal; HhH-GPD domain; KEGG: cob:COB47_1460 8-oxoguanine DNA glycosylase domain-containing protein; SMART: HhH-GPD domain YP_004247764.1 TIGRFAM: cysteine synthase A; cysteine synthase K/M; KEGG: cce:Ccel_3186 cysteine synthase A; PFAM: pyridoxal phosphate-dependent enzyme, subunit beta YP_004247765.1 KEGG: BadM/Rrf2 family transcriptional regulator; TIGRFAM: transcription regulator Rrf2; PFAM: transcription regulator Rrf2 YP_004247766.1 manually curated; TIGRFAM: transcription regulator Rrf2; KEGG: cth:Cthe_1844 BadM/Rrf2 family transcriptional regulator; PFAM: transcription regulator Rrf2 YP_004247767.1 KEGG: fnu:FN0532 hypothetical protein; TIGRFAM: AbrB duplication, membrane protein; PFAM: ammonia monooxygenase YP_004247768.1 PFAM: Uncharacterised protein family UPF0371; KEGG: ote:Oter_4352 hypothetical protein YP_004247769.1 KEGG: ssm:Spirs_2243 DJ-1 family protein; TIGRFAM: DJ-1; PFAM: ThiJ/PfpI YP_004247770.1 TIGRFAM: DHAP synthase, class 1; KEGG: ssm:Spirs_2244 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_004247771.1 KEGG: ssm:Spirs_2245 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004247772.1 KEGG: gur:Gura_2063 beta-lactamase domain-containing protein; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004247773.1 PFAM: Arsenate reductase-like; KEGG: ssm:Spirs_2247 arsenate reductase-like protein YP_004247774.1 KEGG: ssm:Spirs_1501 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004247775.1 PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: asparaginyl-tRNA synthetase, class IIb; HAMAP: asparaginyl-tRNA synthetase, class IIb; KEGG: ssm:Spirs_2248 asparaginyl-tRNA synthetase YP_004247776.1 KEGG: aba:acid345_4290 two component LuxR family transcriptional regulator; PFAM: transcription regulator LuxR, C-terminal; SMART: transcription regulator LuxR, C-terminal YP_004247777.1 KEGG: ssm:Spirs_2252 protein of unknown function DUF188; HAMAP: protein of unknown function DUF188; PFAM: protein of unknown function DUF188 YP_004247778.1 KEGG: cpf:CPF_0826 glycosy hydrolase family protein; PFAM: glycoside hydrolase, family 2, TIM barrel; glycoside hydrolase, family 2, carbohydrate-binding YP_004247779.1 KEGG: sta:STHERM_c17480 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta; TIGRFAM: Pyrophosphate-dependent phosphofructokinase PfpB; PFAM: phosphofructokinase domain YP_004247780.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: ilo:IL0426 signal protein; SMART: Diguanylate cyclase, predicted YP_004247781.1 KEGG: sta:STHERM_c02500 beta-mannosidase precursor; PFAM: glycoside hydrolase, family 2, TIM barrel YP_004247782.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: cpy:Cphy_0594 binding-protein-dependent transport systems inner membrane component YP_004247783.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: cpy:Cphy_0593 binding-protein-dependent transport systems inner membrane component YP_004247784.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: cpy:Cphy_0592 extracellular solute-binding protein YP_004247785.1 PFAM: protein of unknown function DUF1680; KEGG: bpb:bpr_I2715 glycoside hydrolase YP_004247786.1 KEGG: bpb:bpr_I2716 LacI family transcriptional regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004247787.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: sta:STHERM_c02610 sugar ABC transporter sugar-binding protein YP_004247788.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_2121 binding-protein-dependent transport systems inner membrane component YP_004247789.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_2122 binding-protein-dependent transport systems inner membrane component YP_004247790.1 PFAM: ROK; KEGG: ssm:Spirs_1197 ROK family protein YP_004247791.1 KEGG: bfr:BF1734 beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase, family 20, catalytic core YP_004247792.1 PFAM: RNA-binding, CRM domain; KEGG: mgm:Mmc1_3700 hypothetical protein YP_004247793.1 KEGG: ssm:Spirs_2267 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004247794.1 TIGRFAM: Folylpolyglutamate synthetase; KEGG: ssm:Spirs_2271 FolC bifunctional protein; PFAM: Mur ligase, C-terminal; Mur ligase, central YP_004247795.1 PFAM: Domain of unknown function DUF814; Fibronectin-binding A, N-terminal; KEGG: ssm:Spirs_2274 fibronectin-binding A domain protein YP_004247796.1 KEGG: sta:STHERM_c03360 dioxygenase YP_004247797.1 KEGG: ssm:Spirs_2276 hypothetical protein YP_004247798.1 PFAM: tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: sta:STHERM_c12200 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase YP_004247801.1 KEGG: ssm:Spirs_2280 cytidylate kinase; TIGRFAM: cytidylate kinase, PFAM: cytidylate kinase domain YP_004247802.1 KEGG: ssm:Spirs_2281 YicC domain protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: Domain of unknown function DUF1732; YicC-like, N-terminal YP_004247803.1 KEGG: ssm:Spirs_2282 UDP-N-acetylmuramate/alanine ligase; PFAM: Mur ligase, C-terminal; Mur ligase, central; Mur ligase, N-terminal YP_004247804.1 KEGG: tde:TDE0793 hypothetical protein YP_004247806.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: baf:BAPKO_0204 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal YP_004247807.1 HAMAP: D-alanine--D-alanine ligase; KEGG: bra:BRADO2810 D-alanyl-alanine synthetase A; PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal YP_004247808.1 HAMAP: DNA polymerase IV; KEGG: ssm:Spirs_2898 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like YP_004247809.1 PFAM: protein of unknown function DUF454; KEGG: xce:Xcel_1072 protein of unknown function DUF454 YP_004247810.1 PFAM: Major facilitator superfamily MFS-1; KEGG: cce:Ccel_1662 major facilitator superfamily MFS_1 YP_004247811.1 TIGRFAM: bacitracin resistance protein BacA; HAMAP: bacitracin resistance protein BacA; KEGG: aoe:Clos_0946 undecaprenol kinase; PFAM: bacitracin resistance protein BacA YP_004247812.1 PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: eel:EUBELI_01856 RNA methyltransferase, TrmH family, group 2 YP_004247813.1 TIGRFAM: Pyrroline-5-carboxylate reductase; KEGG: ssm:Spirs_2903 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent YP_004247814.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal; TIGRFAM: Seryl-tRNA synthetase, class IIa; HAMAP: Seryl-tRNA synthetase, class IIa; KEGG: ssm:Spirs_2904 seryl-tRNA synthetase YP_004247815.1 TIGRFAM: Nicotinate phosphoribosyltransferase KEGG: ssm:Spirs_2906 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like YP_004247816.1 PFAM: protein of unknown function DUF2174, N-terminal; KEGG: pjd:Pjdr2_0046 hypothetical protein YP_004247817.1 KEGG: ssm:Spirs_2928 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin, catalytic; SMART: cell wall hydrolase/autolysin, catalytic YP_004247818.1 KEGG: ssm:Spirs_2932 hypothetical protein YP_004247819.1 SMART: Pseudouridine synthase/archaeosine transglycosylase; TIGRFAM: glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; KEGG: sta:STHERM_c19790 glutamate 5-kinase; HAMAP: glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; PFAM: aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase YP_004247820.1 KEGG: sta:STHERM_c19780 gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase GPR YP_004247821.1 PFAM: Periplasmic binding protein; KEGG: ssm:Spirs_2941 periplasmic binding protein YP_004247822.1 PFAM: ABC transporter permease; KEGG: ssm:Spirs_2942 transporter permease YP_004247823.1 PFAM: ABC transporter-like; KEGG: ssm:Spirs_2943 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004247824.1 PFAM: Amidohydrolase 1; TIGRFAM: adenine deaminase; HAMAP: adenine deaminase; KEGG: ssm:Spirs_2944 adenine deaminase YP_004247825.1 PFAM: xanthine/uracil/vitamin C permease; KEGG: bpo:BP951000_1268 integral membrane transporter YP_004247826.1 KEGG: bwe:BcerKBAB4_5065 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004247828.1 KEGG: mpl:Mpal_0927 HI0933 family protein; TIGRFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like YP_004247829.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: amt:Amet_1529 glyoxalase/bleomycin resistance protein/dioxygenase YP_004247830.1 TIGRFAM: Probable carbamoyltransferase YgeW; KEGG: ssm:Spirs_1395 carbamoyltransferase YgeW; PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain YP_004247831.1 TIGRFAM: Probable selenate reductase, molybdenum-binding subunit; KEGG: ssm:Spirs_1394 selenate reductase, molybdenum-binding subunit; PFAM: aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead; [2Fe-2S]-binding YP_004247832.1 PFAM: Molybdopterin dehydrogenase, FAD-binding; KEGG: shl:Shal_0656 selenate reductase subunit YgfM YP_004247833.1 KEGG: ssm:Spirs_1392 amidohydrolase; PFAM: Amidohydrolase 1 YP_004247834.1 KEGG: ssm:Spirs_1388 M20/DapE family protein YgeY; TIGRFAM: selenium metabolism hydrolase; PFAM: peptidase M20; peptidase M20, dimerisation YP_004247835.1 TIGRFAM: selenium metabolism protein SsnA; KEGG: hmo:HM1_2652 chlorohydrolase/aminohydrolase; PFAM: Amidohydrolase 1 YP_004247836.1 TIGRFAM: selenate reductase YgfK; KEGG: ssm:Spirs_1386 selenate reductase YgfK; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004247837.1 PFAM: pyridoxal phosphate-dependent enzyme, beta subunit; KEGG: ssm:Spirs_1385 pyridoxal-5'-phosphate-dependent protein beta subunit YP_004247838.1 KEGG: ssm:Spirs_1384 pyridoxal-5'-phosphate-dependent protein subunit beta; PFAM: pyridoxal phosphate-dependent enzyme, beta subunit YP_004247839.1 KEGG: dps:DP1907 hypothetical protein YP_004247840.1 PFAM: Integrase, catalytic core, phage; KEGG: abm:ABSDF1381 phage integrase YP_004247843.1 KEGG: str:Sterm_0665 hypothetical protein YP_004247849.1 PFAM: bacteriophage lambda NinG; KEGG: pdi:BDI_0857 recombination protein YP_004247852.1 KEGG: sta:STHERM_c13180 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_004247853.1 KEGG: ssm:Spirs_2175 hypothetical protein YP_004247854.1 PFAM: ERF; KEGG: cpy:Cphy_2988 hypothetical protein YP_004247855.1 KEGG: amr:AM1_2899 hypothetical protein YP_004247858.1 PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004247861.1 PFAM: Uncharacterised protein family UPF0758; KEGG: ssm:Spirs_3489 DNA repair protein RadC YP_004247862.1 KEGG: cbi:CLJ_0109 hypothetical protein YP_004247863.1 PFAM: Domain of unknown function DUF1738; KEGG: gem:GM21_1461 domain of unknown function DUF1738 YP_004247870.1 PFAM: terminase small subunit; KEGG: llc:LACR_2110 phage terminase, small subunit YP_004247872.1 KEGG: dsa:Desal_2352 phage uncharacterized protein YP_004247873.1 PFAM: Borrelia membrane P13; KEGG: baf:BAPKO_0034 hypothetical protein YP_004247875.1 KEGG: tde:TDE1152 head-to-tail joining protein YP_004247878.1 KEGG: bav:BAV0425 phage protein YP_004247879.1 KEGG: ssm:Spirs_2807 hypothetical protein YP_004247882.1 KEGG: tde:TDE1145 hypothetical protein YP_004247883.1 KEGG: ddi:DDB_G0274265 hypothetical protein YP_004247885.1 KEGG: ssm:Spirs_2813 hypothetical protein YP_004247886.1 KEGG: bfr:BF1980 helicase domain-containing protein; PFAM: Restriction endonuclease, type I, R subunit/type III, Res subunit; Restriction endonuclease, type IV-like, Mrr; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004247887.1 KEGG: she:Shewmr4_3737 hypothetical protein YP_004247889.1 KEGG: pfh:PFHG_00756 conserved hypothetical protein YP_004247892.1 PFAM: Lipase, class 3; KEGG: cyt:cce_2762 hypothetical protein YP_004247895.1 KEGG: lch:Lcho_2232 phage-related protein tail component-like protein YP_004247896.1 KEGG: lla:L21300 prophage pi3 protein 11 YP_004247897.1 KEGG: bwe:BcerKBAB4_5439 hypothetical protein YP_004247898.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: oxidoreductase YP_004247899.1 KEGG: taf:THA_704 hypothetical protein YP_004247900.1 KEGG: amt:Amet_0642 TRAP transporter 4TM/12TM fusion protein; TIGRFAM: TRAP transporter 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit YP_004247901.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: amt:Amet_0643 TRAP transporter solute receptor TAXI family protein YP_004247902.1 KEGG: csh:Closa_1671 hypothetical protein YP_004247903.1 KEGG: drm:Dred_2357 S-layer domain-containing protein YP_004247904.1 PFAM: FAD dependent oxidoreductase; KEGG: pmf:P9303_03731 hypothetical protein YP_004247905.1 KEGG: csh:Closa_2641 flavodoxin YP_004247906.1 PFAM: deoxyribonuclease, TatD-related; KEGG: sta:STHERM_c07890 hypothetical protein YP_004247908.1 TIGRFAM: fructose-1,6-bisphosphate aldolase, class 2; Ketose-bisphosphate aldolase, class-II; KEGG: ssm:Spirs_2588 fructose-1,6-bisphosphate aldolase, class II; PFAM: Ketose-bisphosphate aldolase, class-II YP_004247909.1 TIGRFAM: translation initiation factor 3; HAMAP: translation initiation factor 3; KEGG: ssm:Spirs_2590 translation initiation factor IF-3; PFAM: translation initiation factor 3, N-terminal; translation initiation factor 3, C-terminal YP_004247910.1 TIGRFAM: ribosomal protein L35, non-mitochondrial; HAMAP: ribosomal protein L35, non-mitochondrial; KEGG: ssm:Spirs_2591 ribosomal protein L35; PFAM: ribosomal protein L35 YP_004247911.1 TIGRFAM: ribosomal protein L20; HAMAP: ribosomal protein L20; KEGG: ssm:Spirs_2592 ribosomal protein L20; PFAM: ribosomal protein L20 YP_004247913.1 PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: ssm:Spirs_2596 tetratricopeptide TPR_2 repeat protein YP_004247914.1 KEGG: tde:TDE1469 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria YP_004247915.1 KEGG: ssm:Spirs_2605 peptidase M22 glycoprotease; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; PFAM: peptidase M22, glycoprotease YP_004247916.1 TIGRFAM: thioredoxin reductase; KEGG: sta:STHERM_c07590 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004247917.1 KEGG: ssm:Spirs_2616 glycogen/starch synthase, ADP-glucose type; manually curated; TIGRFAM: glycogen/starch synthases, ADP-glucose type; PFAM: Starch synthase, catalytic domain; glycosyl transferase, group 1; HAMAP: glycogen/starch synthases, ADP-glucose type YP_004247918.1 KEGG: ssm:Spirs_2619 nucleotidyl transferase; PFAM: nucleotidyl transferase YP_004247919.1 PFAM: carbohydrate kinase, FGGY, N-terminal; KEGG: cce:Ccel_3468 carbohydrate kinase FGGY YP_004247920.1 HAMAP: L-arabinose isomerase; KEGG: ccb:Clocel_1254 L-arabinose isomerase; PFAM: L-arabinose isomerase YP_004247921.1 KEGG: sta:STHERM_c20570 transcriptional regulatory protein; PFAM: HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004247922.1 PFAM: Mechanosensitive ion channel MscS; KEGG: kko:Kkor_2109 MscS mechanosensitive ion channel YP_004247924.1 PFAM: NUDIX hydrolase domain; KEGG: sta:STHERM_c07540 hypothetical protein YP_004247926.1 KEGG: ssm:Spirs_2623 carbohydrate kinase, YjeF related protein; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-related protein, N-terminal; PFAM: YjeF-related protein, N-terminal; Uncharacterised protein family, carbohydrate kinase-related YP_004247927.1 KEGG: ssm:Spirs_1695 ABC transporter periplasmic binding protein, ThiB subfamily; TIGRFAM: thiamine ABC transporter periplasmic binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004247928.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_1694 binding-protein-dependent transport systems inner membrane component YP_004247929.1 PFAM: ABC transporter-like; KEGG: pfu:PF1519 sugar-binding transport ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004247932.1 PFAM: peptidase C14, caspase catalytic YP_004247933.1 SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; TIGRFAM: excinuclease ABC subunit B; KEGG: ssm:Spirs_2331 excinuclease ABC subunit B; HAMAP: excinuclease ABC subunit B; PFAM: Helicase, C-terminal; Restriction endonuclease, type I, R subunit/type III, Res subunit; UvrB/UvrC protein YP_004247934.1 PFAM: peptidase S1/S6, chymotrypsin/Hap; KEGG: ssm:Spirs_2332 peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF YP_004247935.1 KEGG: krh:KRH_19710 fructokinase; PFAM: carbohydrate/purine kinase YP_004247936.1 SMART: metal-dependent phosphohydrolase, HD domain; KEGG: ssm:Spirs_0575 metal dependent phosphohydrolase YP_004247937.1 PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase, class Ic; HAMAP: glutaminyl-tRNA synthetase, bacterial; KEGG: ssm:Spirs_1481 glutaminyl-tRNA synthetase YP_004247938.1 PFAM: Amidohydrolase 2; KEGG: ssm:Spirs_1480 amidohydrolase 2 YP_004247939.1 PFAM: rubrerythrin; KEGG: cpy:Cphy_0524 rubrerythrin YP_004247940.1 PFAM: ferric-uptake regulator; KEGG: eel:EUBELI_20027 Fur family transcriptional regulator, ferric uptake regulator YP_004247941.1 KEGG: ske:Sked_22180 hypothetical protein YP_004247942.1 KEGG: ssm:Spirs_1477 hypothetical protein YP_004247943.1 PFAM: alpha-D-phosphohexomutase, alpha/beta/alpha domain I; alpha-D-phosphohexomutase, alpha/beta/alpha domain II; alpha-D-phosphohexomutase, alpha/beta/alpha domain III; alpha-D-phosphohexomutase, C-terminal; KEGG: ssm:Spirs_1476 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_004247944.1 TIGRFAM: UDP-glucose 4-epimerase; KEGG: cte:CT0024 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_004247945.1 KEGG: ppm:PPSC2_c1154 5-nucleotidase domain protein; PFAM: 5'-nucleotidase, C-terminal; metallo-dependent phosphatase YP_004247946.1 KEGG: ssm:Spirs_2236 hypothetical protein YP_004247947.1 TIGRFAM: protein of unknown function DUF37; HAMAP: protein of unknown function DUF37; KEGG: sgo:SGO_1668 hypothetical protein; PFAM: protein of unknown function DUF37 YP_004247948.1 TIGRFAM: uridine kinase; HAMAP: uridine kinase; KEGG: ssm:Spirs_2239 uridine kinase; PFAM: phosphoribulokinase/uridine kinase YP_004247949.1 KEGG: sta:STHERM_c02560 aldose 1-epimerase; PFAM: aldose 1-epimerase YP_004247950.1 TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; HAMAP: GTP-binding protein LepA; KEGG: ssm:Spirs_1828 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFG/EF2, C-terminal YP_004247951.1 SMART: ATPase, AAA+ type, core; TIGRFAM: peptidase M41, FtsH; KEGG: ssm:Spirs_1817 ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; ATPase, AAA-type, core; peptidase M41, FtsH extracellular YP_004247952.1 TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; HAMAP: Lysidine-tRNA(Ile) synthetase; KEGG: btu:BT0788 tRNA(Ile)-lysidine synthetase TilS; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase YP_004247953.1 PFAM: peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; HAMAP: peptidyl-tRNA hydrolase; KEGG: ssm:Spirs_1815 peptidyl-tRNA hydrolase YP_004247954.1 TIGRFAM: ribosomal protein L25, long-form; HAMAP: ribosomal protein L25, long-form; KEGG: ssm:Spirs_1814 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25, short-form YP_004247955.1 KEGG: tit:Thit_2241 SpoVG family protein; HAMAP: septation protein spoVG; PFAM: sporulation stage V, protein G YP_004247956.1 PFAM: GHMP kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: ssm:Spirs_1812 4-diphosphocytidyl-2C-methyl-D-erythritolkinase YP_004247957.1 PFAM: uracil-DNA glycosylase-like; KEGG: ssm:Spirs_3799 uracil-DNA glycosylase superfamily YP_004247958.1 KEGG: pjd:Pjdr2_0215 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004247959.1 KEGG: ssm:Spirs_3134 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase YP_004247960.1 HAMAP: 5-methylthioadenosine/S-adenosylhomocysteine deaminase; KEGG: tit:Thit_1438 amidohydrolase; PFAM: Amidohydrolase 1 YP_004247961.1 PFAM: Initiation factor 2B-related; TIGRFAM: translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; Initiation factor 2B alpha/beta/delta; HAMAP: translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; KEGG: tte:TTE1590 translation initiation factor eIF-2subunit beta alpha YP_004247962.1 PFAM: glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; KEGG: aba:acid345_0942 glutamate dehydrogenase; SMART: glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal YP_004247963.1 KEGG: elm:ELI_3815 rubredoxin oxidoreductase (desulfoferrodoxin); TIGRFAM: desulfoferrodoxin, ferrous iron-binding domain; PFAM: desulfoferrodoxin, ferrous iron-binding domain YP_004247964.1 PFAM: ABC transporter-like; KEGG: ssm:Spirs_3150 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004247965.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: slp:Slip_1021 binding-protein-dependent transport systems inner membrane component YP_004247966.1 KEGG: ssm:Spirs_3152 NMT1/THI5 like domain protein YP_004247967.1 PFAM: Aminoacyl-tRNA synthetase, class Ib; TIGRFAM: tyrosyl-tRNA synthetase, class Ib; HAMAP: tyrosyl-tRNA synthetase, class Ib; KEGG: ssm:Spirs_3153 tyrosyl-tRNA synthetase YP_004247968.1 KEGG: ssm:Spirs_3154 glycyl-tRNA synthetase; TIGRFAM: glycyl-tRNA synthetase, alpha2 dimer; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; anticodon-binding YP_004247969.1 TIGRFAM: glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; KEGG: ssm:Spirs_3155 glutamyl-tRNA synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_004247970.1 PFAM: metal-dependent phosphohydrolase, HD subdomain; KEGG: elm:ELI_1524 hypothetical protein YP_004247971.1 PFAM: alpha/beta hydrolase fold-1; KEGG: pmo:Pmob_0119 carboxylesterase YP_004247972.1 KEGG: bhy:BHWA1_01777 DNA-binding response regulator, LuxR family protein; PFAM: transcription regulator LuxR, C-terminal; SMART: transcription regulator LuxR, C-terminal YP_004247974.1 KEGG: cyh:Cyan8802_0995 RloA protein YP_004247975.1 KEGG: pmo:Pmob_0943 capsular polysaccharide synthesis enzyme CapC YP_004247976.1 PFAM: adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; KEGG: rrs:RoseRS_0557 cob(I)alamin adenosyltransferase YP_004247978.1 HAMAP: pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: fnu:FN0226 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: pyridoxal phosphate (active vitamin B6) biosynthesis PdxA YP_004247979.1 KEGG: ehi:EHI_007510 hypothetical protein YP_004247980.1 PFAM: ABC transporter substrate-binding protein; KEGG: gem:GM21_0736 protein of unknown function DUF534 YP_004247981.1 PFAM: ABC transporter substrate-binding protein; KEGG: gsu:GSU0210 hypothetical protein YP_004247982.1 PFAM: ABC transporter permease; KEGG: ssm:Spirs_2323 inner-membrane translocator YP_004247983.1 PFAM: ABC transporter-like; KEGG: gbm:Gbem_0725 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004247984.1 KEGG: eel:EUBELI_01393 multidrug resistance protein, MATE family; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein YP_004247985.1 PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: bpb:bpr_I1173 xylose ABC transporter substrate-binding protein YP_004247986.1 PFAM: ABC transporter-like; KEGG: csh:Closa_3807 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004247987.1 PFAM: ABC transporter permease; KEGG: csh:Closa_3806 inner-membrane translocator YP_004247988.1 KEGG: bja:blr1118 transcriptional regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004247989.1 KEGG: ssm:Spirs_1809 iojap-related protein; TIGRFAM: ribosome-associated, Iojap-like; PFAM: ribosome-associated, Iojap-like YP_004247991.1 TIGRFAM: Conserved hypothetical protein CHP00488; Uncharacterised protein family HDIG; PFAM: metal-dependent phosphohydrolase, HD subdomain; KEGG: ssm:Spirs_1807 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase, HD domain YP_004247992.1 TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; HAMAP: Probable nicotinate-nucleotide adenylyltransferase; KEGG: ssm:Spirs_1806 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: Cytidylyltransferase YP_004247993.1 TIGRFAM: GTP-binding protein Obg/CgtA; HAMAP: GTP-binding protein Obg/CgtA; KEGG: ssm:Spirs_1805 GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related YP_004247994.1 TIGRFAM: ribosomal protein L27; HAMAP: ribosomal protein L27; KEGG: sta:STHERM_c10280 50S ribosomal protein L27; PFAM: ribosomal protein L27 YP_004247995.1 TIGRFAM: ribosomal protein L21; HAMAP: ribosomal protein L21; KEGG: ssm:Spirs_1802 ribosomal protein L21; PFAM: ribosomal protein L21 YP_004247996.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: btk:BT9727_0971 TetR family transcriptional regulator YP_004247997.1 KEGG: ssm:Spirs_1801 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase, class Ic; HAMAP: arginyl-tRNA synthetase, class Ic YP_004247998.1 KEGG: mla:Mlab_0054 hypothetical protein; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11; Biotin protein ligase, C-terminal YP_004247999.1 PFAM: BioY protein; KEGG: sta:STHERM_c14470 biotin synthesis protein BioY YP_004248000.1 KEGG: ssm:Spirs_1684 serine O-acetyltransferase YP_004248001.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: bhy:BHWA1_00213 ribosomal-protein-S5-alanine acetyltransferase YP_004248002.1 TIGRFAM: MiaB-like tRNA modifying enzyme; methylthiotransferase; PFAM: methylthiotransferase, N-terminal; radical SAM; KEGG: ssm:Spirs_1516 MiaB-like tRNA modifying enzyme; SMART: Elongator protein 3/MiaB/NifB YP_004248003.1 manually curated; KEGG: ssm:Spirs_1513 prephenate dehydrogenase; PFAM: prephenate dehydrogenase YP_004248004.1 PFAM: Major facilitator superfamily MFS-1; KEGG: has:Halsa_0931 major facilitator superfamily MFS_1 YP_004248005.1 TIGRFAM: phosphate acetyltransferase; KEGG: ssm:Spirs_1512 phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase YP_004248006.1 KEGG: shi:Shel_05890 efflux protein, MATE family; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein YP_004248007.1 KEGG: tde:TDE1080 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; manually curated; TIGRFAM: ribosomal RNA adenine dimethylase; SMART: ribosomal RNA adenine methylase transferase, N-terminal; HAMAP: ribosomal RNA adenine dimethylase YP_004248008.1 KEGG: ssm:Spirs_1495 hypothetical protein YP_004248009.1 PFAM: alpha-D-phosphohexomutase, alpha/beta/alpha domain I; alpha-D-phosphohexomutase, alpha/beta/alpha domain II; KEGG: sta:STHERM_c11950 hypothetical protein YP_004248010.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; KEGG: bvu:BVU_1972 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase YP_004248011.1 manually curated; KEGG: phe:Phep_4225 PUA domain containing protein YP_004248012.1 PFAM: Uncharacterised protein family UPF0153; KEGG: tde:TDE0847 hypothetical protein YP_004248013.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: cce:Ccel_2001 Mg2 transporter protein CorA family protein YP_004248014.1 TIGRFAM: Uncharacterised protein family HDIG; KEGG: ttm:Tthe_2220 metal dependent phosphohydrolase YP_004248015.1 KEGG: ssm:Spirs_3959 hypothetical protein YP_004248016.1 KEGG: tde:TDE2107 dihydroorotase YP_004248017.1 KEGG: tde:TDE0982 dihydroorotate dehydrogenase/oxidoreductase, FAD-binding; TIGRFAM: dihydroorotate dehydrogenase, class 1; PFAM: dihydroorotate dehydrogenase, class 1/ 2; oxidoreductase, FAD-binding domain; oxidoreductase FAD/NAD(P)-binding YP_004248018.1 SMART: Orotidine 5'-phosphate decarboxylase domain; TIGRFAM: Orotidine 5'-phosphate decarboxylase, type 2; KEGG: tde:TDE2110 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase domain YP_004248019.1 TIGRFAM: Orotate phosphoribosyl transferase, clade 1; KEGG: tde:TDE1001 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_004248020.1 TIGRFAM: aspartate carbamoyltransferase, eukaryotic; KEGG: tde:TDE0129 bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; PFAM: aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; aspartate carbamoyltransferase regulatory subunit, N-terminal; aspartate carbamoyltransferase regulatory subunit, C-terminal YP_004248021.1 KEGG: pmo:Pmob_0944 exopolysaccharide tyrosine-protein kinase; TIGRFAM: Exopolysaccharide synthesis protein; PFAM: Lipopolysaccharide biosynthesis YP_004248022.1 PFAM: polysaccharide export protein; KEGG: sta:STHERM_c15850 polysaccharide biosynthesis protein YP_004248024.1 PFAM: Basic membrane lipoprotein; KEGG: ssm:Spirs_2769 basic membrane lipoprotein YP_004248025.1 PFAM: ABC transporter-like; KEGG: ssm:Spirs_2768 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004248026.1 PFAM: ABC transporter permease; KEGG: ssm:Spirs_2767 inner-membrane translocator YP_004248027.1 PFAM: ABC transporter permease; KEGG: ssm:Spirs_2766 inner-membrane translocator YP_004248028.1 KEGG: chu:CHU_0232 antifreeze-related protein YP_004248029.1 KEGG: ssm:Spirs_3308 YbaK/EbsC protein; TIGRFAM: prolyl-tRNA editing protein, YbaK/EbsC; PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain YP_004248030.1 KEGG: lba:Lebu_1923 hypothetical protein YP_004248031.1 KEGG: ssm:Spirs_2241 hypothetical protein YP_004248032.1 PFAM: glycine cleavage T-protein, N-terminal; glycine cleavage T-protein, C-terminal barrel; TIGRFAM: glycine cleavage system T protein; HAMAP: Aminomethyltransferase; KEGG: ssm:Spirs_2135 glycine cleavage system T protein YP_004248033.1 KEGG: cth:Cthe_2798 endoribonuclease L-PSP; TIGRFAM: YjgF-like protein; PFAM: endoribonuclease L-PSP YP_004248034.1 KEGG: ere:EUBREC_3638 hypothetical protein; manually curated; PFAM: NADPH-dependent FMN reductase YP_004248035.1 PFAM: Haloacid dehalogenase-like hydrolase; KEGG: elm:ELI_3623 haloacid dehalogenase superfamily YP_004248036.1 PFAM: inositol monophosphatase; KEGG: cts:Ctha_0496 inositol-phosphate phosphatase YP_004248037.1 KEGG: ang:An01g09380 hypothetical protein YP_004248038.1 PFAM: Major facilitator superfamily MFS-1; KEGG: amc:MADE_02754 major facilitator superfamily MFS_1 YP_004248039.1 KEGG: dtu:Dtur_1798 radical SAM protein YP_004248040.1 PFAM: Drug/metabolite transporter; KEGG: dhd:Dhaf_2764 protein of unknown function DUF6 transmembrane YP_004248041.1 KEGG: tna:CTN_1861 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0047; PFAM: Uncharacterised protein family UPF0047 YP_004248042.1 KEGG: ckr:CKR_1460 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII YP_004248043.1 TIGRFAM: phosphoribosyl pyrophosphokinase; KEGG: ssm:Spirs_0557 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_004248044.1 KEGG: ssm:Spirs_3700 Na/Pi-cotransporter II-related protein; TIGRFAM: Na/Pi co-transporter II-related; PFAM: Na/Pi-cotransporter; PhoU YP_004248045.1 TIGRFAM: argininosuccinate lyase; KEGG: ssm:Spirs_3701 argininosuccinate lyase; PFAM: Lyase 1, N-terminal YP_004248046.1 KEGG: sta:STHERM_c01870 hypothetical protein YP_004248047.1 KEGG: olu:OSTLU_31565 hypothetical protein; TIGRFAM: thioredoxin; PFAM: thioredoxin domain YP_004248048.1 PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; KEGG: plt:Plut_1915 XRE family transcriptional regulator YP_004248049.1 PFAM: Major facilitator superfamily MFS-1; KEGG: elm:ELI_1208 macrolide-efflux protein YP_004248050.1 KEGG: ssm:Spirs_3718 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_004248051.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: glyoxalase/bleomycin resistance protein/dioxygenase YP_004248052.1 PFAM: metal-dependent phosphohydrolase, HD subdomain; KEGG: tko:TK0480 HD superfamily metal-dependent phosphohydrolase YP_004248053.1 KEGG: cbl:CLK_1478 hypothetical protein YP_004248054.1 KEGG: ssm:Spirs_4169 beta-lactamase domain-containing protein; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004248055.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: lbf:LBF_0720 AcrR family transcriptional regulator YP_004248056.1 KEGG: pjd:Pjdr2_1888 carbohydrate kinase FGGY; PFAM: carbohydrate kinase, FGGY, N-terminal; carbohydrate kinase, FGGY, C-terminal YP_004248057.1 PFAM: GtrA-like protein; KEGG: mcu:HMPREF0573_10304 hypothetical protein YP_004248058.1 KEGG: pjd:Pjdr2_1891 aminotransferase class-III; PFAM: Aminotransferase class-III YP_004248059.1 PFAM: class II aldolase/adducin, N-terminal; KEGG: pjd:Pjdr2_1890 class II aldolase/adducin family protein YP_004248060.1 KEGG: ppn:Palpr_0704 hypothetical protein YP_004248061.1 KEGG: csh:Closa_0371 oxidoreductase domain protein YP_004248062.1 PFAM: GtrA-like protein; KEGG: mcu:HMPREF0573_10304 hypothetical protein YP_004248063.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: clj:CLJU_c35860 transcriptional regulator YP_004248064.1 KEGG: cpy:Cphy_1839 hypothetical protein YP_004248065.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: csh:Closa_3500 hypothetical protein; SMART: Diguanylate cyclase, predicted YP_004248066.1 KEGG: sli:Slin_1798 phosphoesterase PA-phosphatase related protein; PFAM: phosphatidic acid phosphatase type 2/haloperoxidase; SMART: phosphatidic acid phosphatase type 2/haloperoxidase YP_004248067.1 KEGG: bpb:bpr_I0961 PAP2 family protein; PFAM: phosphatidic acid phosphatase type 2/haloperoxidase; SMART: phosphatidic acid phosphatase type 2/haloperoxidase YP_004248068.1 KEGG: csh:Closa_1639 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004248069.1 KEGG: shi:Shel_06320 hypothetical protein YP_004248070.1 PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; KEGG: tde:TDE0353 GDSL family lipase/acylhydrolase YP_004248071.1 KEGG: acl:ACL_0450 hypothetical protein YP_004248072.1 PFAM: NADH-quinone reductase NQR2/RnfD; KEGG: ssm:Spirs_0594 electron transport complex, RnfABCDGE type, D subunit YP_004248073.1 KEGG: ssm:Spirs_0595 FMN-binding domain protein; PFAM: FMN-binding; SMART: FMN-binding YP_004248074.1 KEGG: ssm:Spirs_0596 NADH:ubiquinone oxidoreductase, subunit D; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit; PFAM: electron transport complex, Rnf/Nqr YP_004248075.1 PFAM: electron transport complex, Rnf/Nqr; KEGG: ssm:Spirs_0597 RnfA-Nqr electron transport subunit YP_004248076.1 KEGG: ssm:Spirs_0598 oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: oxidoreductase FAD/NAD(P)-binding; oxidoreductase, FAD-binding domain; ferredoxin YP_004248077.1 KEGG: ssm:Spirs_0599 hypothetical protein YP_004248078.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dhd:Dhaf_0017 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004248079.1 KEGG: tkm:TK90_1524 3-demethylubiquinone-9 3-methyltransferase YP_004248080.1 KEGG: dhd:Dhaf_1121 hypothetical protein YP_004248081.1 KEGG: oih:OB0722 transcriptional regulator; PFAM: Bacterial transcription activator, effector binding; HTH transcriptional regulator, AraC; SMART: Bacterial transcription activator, effector binding; Helix-turn-helix, AraC type, DNA binding domain YP_004248082.1 KEGG: tde:TDE2085 uridylate kinase; TIGRFAM: Uridylate kinase, archaeal/spirochete, PFAM: aspartate/glutamate/uridylate kinase YP_004248083.1 PFAM: radical SAM; KEGG: ssm:Spirs_3763 radical SAM domain protein YP_004248084.1 KEGG: ssm:Spirs_0041 patatin; manually curated; PFAM: patatin/phospholipase A2-related YP_004248085.1 manually curated; KEGG: bga:BG0098 hypothetical protein YP_004248086.1 PFAM: nucleoside phosphorylase domain; KEGG: sta:STHERM_c12670 MTA/SAH nucleosidase YP_004248087.1 PFAM: carbohydrate/purine kinase; KEGG: dat:HRM2_15500 pyridoxamine kinase YP_004248088.1 PFAM: alpha-D-phosphohexomutase, alpha/beta/alpha domain I; KEGG: ssm:Spirs_2289 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_004248089.1 KEGG: mru:mru_1429 DNA mismatch endonuclease Vsr; TIGRFAM: DNA mismatch endonuclease vsr; PFAM: DNA mismatch endonuclease vsr YP_004248090.1 KEGG: ssm:Spirs_3985 hexokinase; PFAM: Hexokinase, N-terminal; Hexokinase, C-terminal YP_004248092.1 PFAM: exonuclease C-terminal; exonuclease, RNase T/DNA polymerase III; KEGG: slo:Shew_1611 exonuclease I; SMART: exonuclease YP_004248093.1 TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; KEGG: lby:Lbys_2773 2-amino-3-ketobutyrate coenzyme a ligase; PFAM: Aminotransferase, class I/classII YP_004248094.1 KEGG: bcy:Bcer98_0534 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004248095.1 KEGG: ssm:Spirs_2303 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3 YP_004248096.1 PFAM: Major facilitator superfamily MFS-1; KEGG: pjd:Pjdr2_6129 major facilitator superfamily MFS_1 YP_004248097.1 SMART: peptide chain release factor; TIGRFAM: peptide chain release factor 1; KEGG: tde:TDE2489 peptide chain release factor 1; HAMAP: peptide chain release factor 1; PFAM: peptide chain release factor class I/class II; peptide chain release factor YP_004248098.1 KEGG: scl:sce8056 methyltransferase HemK; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: methyltransferase small YP_004248099.1 SMART: RelA/SpoT; metal-dependent phosphohydrolase, HD domain; TIGRFAM: RelA/SpoT protein; KEGG: ssm:Spirs_3047 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT; metal-dependent phosphohydrolase, HD subdomain; TGS YP_004248100.1 KEGG: ssm:Spirs_2661 inorganic diphosphatase; PFAM: DHHA2; cystathionine beta-synthase, core YP_004248101.1 KEGG: ssm:Spirs_2662 sugar-phosphate isomerase, RpiB/LacA/LacB family; TIGRFAM: ribose/galactose isomerase; PFAM: ribose/galactose isomerase YP_004248104.1 KEGG: meh:M301_0983 phospholipase D/transphosphatidylase; PFAM: phospholipase D/transphosphatidylase; SMART: phospholipase D/transphosphatidylase YP_004248105.1 KEGG: ssm:Spirs_2325 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; CMP/dCMP deaminase, zinc-binding YP_004248106.1 KEGG: ssm:Spirs_2735 dihydropyrimidinase; PFAM: Amidohydrolase 1 YP_004248107.1 KEGG: ssm:Spirs_2132 glycine cleavage system P-protein YP_004248108.1 KEGG: ssm:Spirs_2133 glycine dehydrogenase (decarboxylating); PFAM: glycine cleavage system P-protein, N-terminal YP_004248109.1 TIGRFAM: glycine cleavage H-protein, subgroup; HAMAP: glycine cleavage H-protein; KEGG: aoe:Clos_0066 glycine cleavage system H protein; PFAM: glycine cleavage H-protein YP_004248110.1 KEGG: ssm:Spirs_2146 glycine hydroxymethyltransferase; PFAM: serine hydroxymethyltransferase YP_004248111.1 PFAM: Sodium:neurotransmitter symporter; KEGG: elm:ELI_3387 hypothetical protein YP_004248112.1 SMART: RNA-binding domain, S1; TIGRFAM: translation initiation factor IF-1; KEGG: ssm:Spirs_0463 translation initiation factor IF-1; HAMAP: translation initiation factor IF-1; PFAM: RNA-binding domain, S1, IF1 type YP_004248113.1 KEGG: ssm:Spirs_0462 Smr protein/MutS2; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal YP_004248114.1 KEGG: ssm:Spirs_0348 signal transduction protein with CBS domains; PFAM: cystathionine beta-synthase, core; Amino acid-binding ACT; SMART: cystathionine beta-synthase, core YP_004248115.1 KEGG: ssm:Spirs_0347 ABC transporter protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004248116.1 PFAM: ABC transporter-like; KEGG: drm:Dred_1723 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004248117.1 PFAM: ABC transporter permease; KEGG: amt:Amet_4117 inner-membrane translocator YP_004248118.1 PFAM: ABC transporter permease; KEGG: lci:LCK_00546 branched chain amino acid ABC transporter permease YP_004248119.1 PFAM: extracellular ligand-binding receptor; KEGG: bba:Bd3385 branched-chain amino acid ABC transporter amino acid-binding protein YP_004248120.1 TIGRFAM: Large-conductance mechanosensitive channel; HAMAP: Large-conductance mechanosensitive channel; KEGG: cce:Ccel_1425 large conductance mechanosensitive channel protein; PFAM: Large-conductance mechanosensitive channel YP_004248121.1 PFAM: peptidase M24, structural domain; Creatinase; KEGG: dal:Dalk_0504 peptidase M24 YP_004248122.1 PFAM: SCP2 sterol-binding domain; KEGG: tac:Ta0831 hypothetical protein YP_004248123.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: reu:Reut_A1987 TetR family transcriptional regulator YP_004248125.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase I, bacterial-type; KEGG: ssm:Spirs_0893 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain YP_004248127.1 KEGG: gsu:GSU0273 radical SAM domain-containing protein; PFAM: radical SAM; cobalamin (vitamin B12)-binding; SMART: Elongator protein 3/MiaB/NifB YP_004248128.1 KEGG: ssm:Spirs_3916 hypothetical protein YP_004248129.1 KEGG: ssm:Spirs_3050 GTP-binding protein YchF; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Domain of unknown function DUF933; GTP-binding protein, HSR1-related YP_004248130.1 KEGG: ssm:Spirs_3087 GTP-binding protein HflX; TIGRFAM: GTP-binding protein, HflX; PFAM: GTP-binding protein, HSR1-related YP_004248132.1 KEGG: cce:Ccel_0706 oligopeptide transporters, OPT superfamily; TIGRFAM: oligopeptide transporter OPT superfamily; PFAM: oligopeptide transporter OPT superfamily YP_004248133.1 KEGG: ssm:Spirs_3145 radical SAM enzyme, Cfr family; TIGRFAM: ribosomal RNA large subunit methyltransferase RlmN; PFAM: radical SAM YP_004248134.1 PFAM: Major facilitator superfamily MFS-1; KEGG: dsy:DSY0014 hypothetical protein YP_004248135.1 KEGG: cdl:CDR20291_3057 MerR-family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004248136.1 TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; threonyl/alanyl tRNA synthetase, SAD; KEGG: ssm:Spirs_3146 alanyl-tRNA synthetase; SMART: threonyl/alanyl tRNA synthetase, SAD YP_004248137.1 PFAM: DNA recombination-mediator protein A; KEGG: pin:Ping_0076 DNA protecting protein DprA YP_004248138.1 KEGG: toc:Toce_0259 HhH-GPD family protein; PFAM: HhH-GPD domain; SMART: HhH-GPD domain YP_004248139.1 KEGG: vpr:Vpar_0099 beta-lactamase; PFAM: beta-lactamase-like; Flavodoxin/nitric oxide synthase; SMART: beta-lactamase-like YP_004248140.1 KEGG: cbe:Cbei_3016 CRP/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp YP_004248143.1 PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: ttm:Tthe_1356 RpiR family transcriptional regulator YP_004248144.1 PFAM: peptidase M55, D-aminopeptidase; KEGG: kol:Kole_0265 peptidase M55 D-aminopeptidase YP_004248145.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_0025 binding-protein-dependent transport systems inner membrane component YP_004248146.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_0026 binding-protein-dependent transport systems inner membrane component YP_004248147.1 SMART: ATPase, AAA+ type, core; TIGRFAM: oligopeptide/dipeptide ABC transporter ATP-binding protein, C-terminal; KEGG: ssm:Spirs_0027 oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter-like; oligopeptide/dipeptide ABC transporter C-terminal YP_004248148.1 SMART: ATPase, AAA+ type, core; TIGRFAM: oligopeptide/dipeptide ABC transporter ATP-binding protein, C-terminal; KEGG: ssm:Spirs_0028 oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter-like; oligopeptide/dipeptide ABC transporter C-terminal YP_004248149.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: ssm:Spirs_0029 extracellular solute-binding protein family 5 YP_004248150.1 KEGG: ssm:Spirs_0031 glutamyl aminopeptidase; PFAM: peptidase M42 YP_004248151.1 KEGG: ssm:Spirs_0032 hypothetical protein YP_004248152.1 KEGG: hypothetical protein YP_004248153.1 PFAM: Haloacid dehalogenase-like hydrolase; KEGG: ssm:Spirs_3219 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_004248154.1 PFAM: ABC transporter-like; KEGG: sfu:Sfum_1750 cobalt ABC transporter ATPase; SMART: ATPase, AAA+ type, core YP_004248155.1 PFAM: Cobalt transporter; KEGG: sfu:Sfum_1751 cobalt transporter YP_004248156.1 KEGG: ssm:Spirs_1643 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase YP_004248157.1 PFAM: phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; KEGG: ssm:Spirs_0013 PTS IIA-like nitrogen-regulatory protein PtsN YP_004248158.1 TIGRFAM: glutamate synthase (NADPH), homotetrameric; KEGG: ssm:Spirs_1641 glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004248159.1 PFAM: oxidoreductase FAD/NAD(P)-binding; dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: ssm:Spirs_1640 oxidoreductase FAD/NAD(P)-binding domain protein YP_004248160.1 PFAM: Cupin 2, conserved barrel; KEGG: ssm:Spirs_1595 cupin 2 conserved barrel domain protein YP_004248161.1 PFAM: heat shock protein Hsp20; KEGG: fno:Fnod_0102 heat shock protein HSP20 YP_004248162.1 TIGRFAM: phosphoribosylformylglycinamidine synthase, FGAM; KEGG: mla:Mlab_0300 carbamoyl-phosphate synthase, large subunit; PFAM: AIR synthase-related protein, C-terminal YP_004248163.1 PFAM: phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, N-domain; phosphoribosylglycinamide synthetase, C-domain; TIGRFAM: phosphoribosylglycinamide synthetase; HAMAP: phosphoribosylglycinamide synthetase; KEGG: phosphoribosylamine/glycine ligase YP_004248164.1 PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; KEGG: bvu:BVU_1693 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; SMART: AICARFT/IMPCHase bienzyme, transformylase domain YP_004248165.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; KEGG: phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal; inosine monophosphate cyclohydrolase-like YP_004248166.1 TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase-related protein; AIR synthase-related protein, C-terminal YP_004248167.1 TIGRFAM: Amidophosphoribosyl transferase; KEGG: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase, class-II; phosphoribosyltransferase YP_004248168.1 PFAM: SAICAR synthetase; TIGRFAM: SAICAR synthetase; HAMAP: SAICAR synthetase; KEGG: phosphoribosylaminoimidazole-succinocarboxamide synthase YP_004248169.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, core; KEGG: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: phosphoribosylaminoimidazole carboxylase, core YP_004248170.1 KEGG: shi:Shel_01840 C_GCAxxG_C_C family probable redox protein; TIGRFAM: CGCAxxGCC motif; PFAM: CGCAxxGCC motif YP_004248171.1 KEGG: gme:Gmet_2524 ABC transporter-related protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004248172.1 PFAM: radical SAM; KEGG: fno:Fnod_0983 radical SAM domain-containing protein YP_004248173.1 KEGG: dbr:Deba_0757 AMMECR1 domain protein; TIGRFAM: AMMECR1; PFAM: AMMECR1 YP_004248174.1 PFAM: UPF0103/Mediator of ErbB2-driven cell motility (Memo-related); KEGG: clu:CLUG_04128 hypothetical protein YP_004248175.1 KEGG: ssm:Spirs_1216 glycoside hydrolase family 3 domain protein; PFAM: glycoside hydrolase, family 3, N-terminal; glycoside hydrolase, family 3, C-terminal YP_004248176.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: pjd:Pjdr2_5596 binding-protein-dependent transport systems inner membrane component YP_004248177.1 KEGG: pjd:Pjdr2_5597 binding-protein-dependent transport systems inner membrane component YP_004248178.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: pjd:Pjdr2_5598 extracellular solute-binding protein family 1 YP_004248179.1 KEGG: ssm:Spirs_1218 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004248180.1 KEGG: ssm:Spirs_1217 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; Periplasmic binding protein/LacI transcriptional regulator; SMART: ATPase-like, ATP-binding domain YP_004248182.1 PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: ddf:DEFDS_1537 K+ transport (Trk) system NAD-binding component YP_004248183.1 PFAM: Cation transporter; KEGG: ddf:DEFDS_1538 K+ transport (Trk) system membrane component YP_004248184.1 KEGG: cdl:CDR20291_1887 hypothetical protein YP_004248185.1 KEGG: shi:Shel_16690 platelet-activating factor acetylhydrolase, plasma/intracellular isoform II YP_004248186.1 PFAM: gluconate transporter; KEGG: tde:TDE0207 GntP family permease YP_004248187.1 TIGRFAM: glycerate kinase; KEGG: tde:TDE0208 glycerate kinase; PFAM: glycerate kinase YP_004248188.1 manually curated; KEGG: dhd:Dhaf_2175 hypothetical protein YP_004248189.1 PFAM: peptidase M19, renal dipeptidase; KEGG: cdl:CDR20291_3407 dipeptidase YP_004248190.1 KEGG: dae:Dtox_2256 thioredoxin; TIGRFAM: thioredoxin; PFAM: thioredoxin domain YP_004248191.1 PFAM: pyridoxal phosphate-dependent enzyme, beta subunit; TIGRFAM: tryptophan synthase, beta chain; HAMAP: tryptophan synthase beta chain/beta chain-like; KEGG: pca:Pcar_1244 tryptophan synthase subunit beta YP_004248192.1 manually curated; TIGRFAM: CRISPR associated protein Cas2; KEGG: emi:Emin_0245 CRISPR-associated Cas2 family protein; PFAM: virulence-associated protein D / CRISPR associated protein Cas2 YP_004248193.1 KEGG: rsd:TGRD_057 CRISPR-associated protein Cas1; TIGRFAM: CRISPR-associated protein Cas1, NMENI subtype; CRISPR-associated protein Cas1; PFAM: CRISPR-associated protein Cas1 YP_004248194.1 KEGG: emi:Emin_0243 CRISPR-associated endonuclease Csn1 family protein; TIGRFAM: CRISPR-associated protein, SAG0894; PFAM: HNH endonuclease YP_004248195.1 KEGG: gdj:Gdia_3096 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004248196.1 PFAM: Drug/metabolite transporter; KEGG: str:Sterm_1343 protein of unknown function DUF6 transmembrane YP_004248197.1 KEGG: ste:STER_0402 ABC-type branched-chain amino acid transporter, ATPase component; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004248198.1 PFAM: ABC transporter-like; KEGG: str:Sterm_2431 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004248199.1 PFAM: ABC transporter permease; KEGG: ipo:Ilyop_0416 amino acid/amide ABC transporter membrane protein 2, HAAT family YP_004248200.1 PFAM: ABC transporter permease; KEGG: cst:CLOST_2203 leucine/isoleucine/valine transporter subunit ; membrane component of ABC superfamily YP_004248201.1 PFAM: extracellular ligand-binding receptor; KEGG: amino acid/amide ABC transporter substrate-binding protein, HAAT family YP_004248202.1 KEGG: gym:GYMC10_0510 dihydrodipicolinate synthetase YP_004248203.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: cpy:Cphy_0392 NAD-dependent epimerase/dehydratase YP_004248204.1 KEGG: aar:Acear_1192 amidohydrolase; TIGRFAM: peptidase M20D, amidohydrolase; PFAM: peptidase M20; peptidase M20, dimerisation YP_004248205.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: rso:RSc1007 transcription regulator protein YP_004248206.1 KEGG: sli:Slin_1798 phosphoesterase PA-phosphatase related protein; PFAM: phosphatidic acid phosphatase type 2/haloperoxidase; SMART: phosphatidic acid phosphatase type 2/haloperoxidase YP_004248207.1 KEGG: ssm:Spirs_3751 regulatory protein RecX; HAMAP: Regulatory protein RecX; PFAM: Regulatory protein RecX YP_004248208.1 PFAM: ribosomal protein S9; KEGG: ssm:Spirs_3752 ribosomal protein S9 YP_004248209.1 KEGG: ssm:Spirs_3753 ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial-type; PFAM: ribosomal protein L13 YP_004248210.1 KEGG: sta:STHERM_c21200 hypothetical protein YP_004248211.1 PFAM: DNA helicase, UvrD/REP type; KEGG: ssm:Spirs_3757 UvrD/REP helicase YP_004248212.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: ribosomal protein S12 methylthiotransferase RimO; methylthiotransferase; KEGG: ssm:Spirs_3758 MiaB-like tRNA modifying enzyme YliG; HAMAP: ribosomal protein S12 methylthiotransferase RimO; PFAM: methylthiotransferase, N-terminal; radical SAM YP_004248213.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: sta:STHERM_c02770 oligopeptide ABC transporter permease YP_004248214.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: sta:STHERM_c02780 oligopeptide ABC transporter permease, inner membrane component YP_004248215.1 SMART: ATPase, AAA+ type, core; TIGRFAM: oligopeptide/dipeptide ABC transporter ATP-binding protein, C-terminal; KEGG: sta:STHERM_c02790 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein; PFAM: ABC transporter-like; oligopeptide/dipeptide ABC transporter C-terminal YP_004248216.1 SMART: ATPase, AAA+ type, core; TIGRFAM: oligopeptide/dipeptide ABC transporter ATP-binding protein, C-terminal; KEGG: sta:STHERM_c02800 oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter-like; oligopeptide/dipeptide ABC transporter C-terminal YP_004248218.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: sta:STHERM_c02760 oligopeptide ABC transporter periplasmic oligopeptide-binding protein YP_004248220.1 KEGG: cth:Cthe_1425 membrane-bound proton-translocating pyrophosphatase; PFAM: Pyrophosphate-energised proton pump YP_004248221.1 KEGG: ssm:Spirs_3940 threonine aldolase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase YP_004248222.1 PFAM: 4Fe-4S binding domain; KEGG: cbe:Cbei_2492 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004248223.1 KEGG: gmc:GY4MC1_0555 aminotransferase class I and II; PFAM: Aminotransferase, class I/classII YP_004248224.1 KEGG: apv:Apar_0450 lipolytic protein G-D-S-L family YP_004248225.1 PFAM: transaldolase; KEGG: sss:SSUSC84_0634 fructose-6-phosphate aldolase YP_004248226.1 KEGG: rba:RB1454 xylose operon regulatory protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004248227.1 KEGG: sus:acid_2860 aldehyde reductase; PFAM: NADP-dependent oxidoreductase domain YP_004248228.1 PFAM: alcohol dehydrogenase, C-terminal; alcohol dehydrogenase GroES-like; KEGG: sus:acid_2859 alcohol dehydrogenase; SMART: polyketide synthase, enoylreductase YP_004248229.1 KEGG: smd:Smed_4315 periplasmic binding protein/LacI transcriptional regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004248230.1 PFAM: ABC transporter permease; KEGG: ctc:CTC00862 beta-methylgalactoside transporter inner membrane component YP_004248231.1 PFAM: ABC transporter-like; KEGG: ttm:Tthe_2380 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004248232.1 KEGG: str:Sterm_1702 galactose-binding protein YP_004248233.1 KEGG: hor:Hore_09600 rhamnulokinase; PFAM: carbohydrate kinase, FGGY, N-terminal YP_004248234.1 PFAM: alcohol dehydrogenase, C-terminal; alcohol dehydrogenase GroES-like; KEGG: csc:Csac_0869 alcohol dehydrogenase YP_004248235.1 KEGG: sta:STHERM_c08270 hypothetical protein; PFAM: Short-chain dehydrogenase/reductase SDR YP_004248236.1 KEGG: chd:Calhy_1972 hypothetical protein YP_004248237.1 PFAM: transketolase-like, pyrimidine-binding domain; dehydrogenase, E1 component; transketolase, C-terminal; KEGG: sta:STHERM_c08250 dehydrogenase, fusion; SMART: transketolase-like, pyrimidine-binding domain YP_004248238.1 TIGRFAM: dihydrolipoamide dehydrogenase; KEGG: csc:Csac_0873 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004248239.1 KEGG: ckn:Calkro_1928 catalytic domain-containing protein of components of various dehydrogenase complexes; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; E3 binding; Biotin/lipoyl attachment YP_004248240.1 KEGG: sta:STHERM_c08230 transcriptional regulatory protein; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004248241.1 KEGG: bth:BT_4177 hypothetical protein; TIGRFAM: L-rhamnose 1-epimerase; PFAM: Rhamnose mutarotase YP_004248242.1 PFAM: ABC transporter permease; KEGG: sta:STHERM_c08350 transporter YP_004248243.1 PFAM: ABC transporter permease; KEGG: oan:Oant_3568 monosaccharide-transporting ATPase YP_004248244.1 PFAM: ABC transporter-like; KEGG: sta:STHERM_c08330 ribose/galactose/methyl galactoside import ATP-bindingprotein; SMART: ATPase, AAA+ type, core YP_004248245.1 TIGRFAM: Rhamnose ABC transporter rhamnose-binding; KEGG: sta:STHERM_c08320 transporter YP_004248246.1 PFAM: sodium symporter; KEGG: gka:GK1988 sodium dependent transporter YP_004248247.1 PFAM: class II aldolase/adducin, N-terminal; KEGG: sta:STHERM_c08370 short chain dehydrogenase YP_004248248.1 KEGG: csc:Csac_0876 L-rhamnose isomerase; PFAM: Rhamnose isomerase YP_004248249.1 KEGG: rba:RB680 L-rhamnose operon transcriptional activator; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004248250.1 PFAM: D-ribose pyranase RbsD/L-fucose mutarotase FucU; KEGG: bcq:BCQ_3003 ribose ABC transporter protein YP_004248251.1 PFAM: L-fucose isomerase-like, C-terminal; L-fucose isomerase, N-terminal-1; L-fucose isomerase, N-terminal-2; TIGRFAM: L-fucose isomerase; HAMAP: L-fucose isomerase; KEGG: bfr:BF0253 L-fucose isomerase YP_004248252.1 KEGG: fre:Franean1_1642 hypothetical protein YP_004248253.1 KEGG: aca:ACP_1954 2,3-diketo-L-gulonate reductase; PFAM: malate/L-lactate dehydrogenase YP_004248254.1 PFAM: DNA helicase, UvrD/REP type; KEGG: ssm:Spirs_3944 UvrD/REP helicase YP_004248255.1 KEGG: ssm:Spirs_3945 hypothetical protein YP_004248256.1 PFAM: hypothetical protein; KEGG: mfv:Mfer_0577 abortive infection protein YP_004248257.1 KEGG: tde:TDE1234 hypothetical protein YP_004248259.1 PFAM: peptidase S66, LD-carboxypeptidase A; KEGG: cbf:CLI_2833 LD-carboxypeptidase family protein YP_004248260.1 PFAM: Enolase, C-terminal; Enolase, N-terminal; TIGRFAM: Enolase; HAMAP: Enolase; KEGG: ssm:Spirs_3747 enolase YP_004248261.1 TIGRFAM: Prevent-host-death protein; KEGG: ele:Elen_2346 prevent-host-death family protein YP_004248262.1 PFAM: Plasmid stabilisation system; KEGG: ele:Elen_2345 plasmid stabilization system YP_004248263.1 KEGG: ssm:Spirs_3745 GCN5-related N-acetyltransferase YP_004248264.1 KEGG: sno:Snov_4298 glucosamine/galactosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase YP_004248265.1 PFAM: Mannonate dehydratase; TIGRFAM: Mannonate dehydratase; HAMAP: Mannonate dehydratase; KEGG: brm:Bmur_2038 mannonate dehydratase YP_004248266.1 KEGG: cbe:Cbei_4660 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR YP_004248267.1 KEGG: cpy:Cphy_1062 mannitol dehydrogenase domain-containing protein; PFAM: mannitol dehydrogenase, C-terminal; mannitol dehydrogenase, N-terminal YP_004248268.1 PFAM: protein of unknown function DUF161; Domain of unknown function DUF2179; KEGG: ipo:Ilyop_0841 protein of unknown function DUF161 YP_004248269.1 PFAM: LrgB-like protein; KEGG: ipo:Ilyop_2105 LrgB family protein YP_004248270.1 PFAM: Uncharacterised protein family LrgA/YohJ; KEGG: cbe:Cbei_0936 LrgA family protein YP_004248271.1 PFAM: nitroreductase-like; KEGG: bth:BT_1148 NADH dehydrogenase/NAD(P)H nitroreductase YP_004248272.1 KEGG: cts:Ctha_1807 DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; SMART: DNA/RNA non-specific endonuclease; extracellular endonuclease, subunit A YP_004248273.1 PFAM: glycoside hydrolase, family 31; KEGG: pam:PANA_3493 YihQ YP_004248274.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_0935 binding-protein-dependent transport systems inner membrane component YP_004248275.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_0934 binding-protein-dependent transport systems inner membrane component YP_004248276.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ssm:Spirs_0933 extracellular solute-binding protein family 1 YP_004248277.1 PFAM: L-fucose isomerase-like, C-terminal; KEGG: bpo:BP951000_1131 L-fucose isomerase-like protein YP_004248278.1 PFAM: ROK; KEGG: rsa:RSal33209_3465 ROK family transcriptional regulator YP_004248279.1 KEGG: kol:Kole_0993 transketolase; PFAM: transketolase, N-terminal YP_004248280.1 PFAM: transketolase-like, pyrimidine-binding domain; transketolase, C-terminal; KEGG: ssm:Spirs_2991 transketolase domain protein; SMART: transketolase-like, pyrimidine-binding domain YP_004248281.1 KEGG: amr:AM1_6263 ribose 5-phosphate isomerase B; TIGRFAM: ribose/galactose isomerase; PFAM: ribose/galactose isomerase YP_004248282.1 KEGG: cti:RALTA_B0680 alcool deshydrogenase; PFAM: alcohol dehydrogenase, iron-type YP_004248283.1 PFAM: protein of unknown function DUF81; KEGG: bpo:BP951000_1133 permease YP_004248284.1 KEGG: bmq:BMQ_3647 hypothetical protein YP_004248285.1 KEGG: ssm:Spirs_4125 hypothetical protein YP_004248286.1 TIGRFAM: translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFG/EF2, domain IV; translation elongation factor EFG/EF2, C-terminal; KEGG: ssm:Spirs_4126 translation elongation factor G; SMART: translation elongation factor EFG/EF2, domain IV; translation elongation factor EFG/EF2, C-terminal YP_004248287.1 PFAM: histidine triad (HIT) protein; KEGG: sto:ST1471 histidine triad nucleotide-binding protein YP_004248288.1 KEGG: afw:Anae109_1182 hypothetical protein YP_004248289.1 KEGG: cyb:CYB_2566 hypothetical protein YP_004248290.1 KEGG: rba:RB5302 signal peptide YP_004248291.1 KEGG: cbl:CLK_0467 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004248292.1 PFAM: peptidyl-prolyl cis-trans isomerase, FKBP-type; peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; KEGG: she:Shewmr4_3034 peptidylprolyl isomerase, FKBP-type YP_004248293.1 TIGRFAM: Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; KEGG: cst:CLOST_1067 fumarate hydratase subunit beta (fumarase); PFAM: Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain YP_004248294.1 TIGRFAM: Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; KEGG: tde:TDE1520 fumarate hydratase; PFAM: Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain YP_004248296.1 KEGG: ssm:Spirs_0581 hypothetical protein; PFAM: radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_004248297.1 PFAM: patatin/phospholipase A2-related; KEGG: ssm:Spirs_3807 patatin YP_004248298.1 PFAM: Formyl transferase, C-terminal; Formyl transferase, N-terminal; TIGRFAM: Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; KEGG: ssm:Spirs_1655 methionyl-tRNA formyltransferase YP_004248299.1 TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: ssm:Spirs_1654 peptide deformylase; PFAM: Formylmethionine deformylase YP_004248301.1 TIGRFAM: Primosomal protein n; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: ssm:Spirs_1653 primosomal protein N'; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004248302.1 KEGG: sta:STHERM_c18320 hypothetical protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase-like YP_004248303.1 PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; TIGRFAM: Pseudouridine synthase I, TruA; HAMAP: Pseudouridine synthase I, TruA; KEGG: ssm:Spirs_1651 tRNA pseudouridine synthase A YP_004248304.1 TIGRFAM: phosphopantethiene-protein transferase; Holo-[acyl carrier protein] synthase; HAMAP: Holo-[acyl carrier protein] synthase; KEGG: sta:STHERM_c18350 holo-(acyl-carrier-protein) synthase; PFAM: 4'-phosphopantetheinyl transferase YP_004248305.1 PFAM: YbbR-like; KEGG: ssm:Spirs_1648 YbbR family protein YP_004248306.1 KEGG: ssm:Spirs_1647 protein of unknown function DUF147; TIGRFAM: Conserved hypothetical protein CHP00159; PFAM: DNA integrity scanning protein, DisA, N-terminal YP_004248307.1 PFAM: carbohydrate kinase, FGGY, N-terminal; carbohydrate kinase, FGGY, C-terminal; TIGRFAM: glycerol kinase; HAMAP: glycerol kinase; KEGG: ssm:Spirs_1645 glycerol kinase YP_004248308.1 KEGG: ssm:Spirs_3655 hypothetical protein YP_004248309.1 KEGG: ssm:Spirs_3656 anti-sigma regulatory factor, serine/threonine protein kinase; manually curated; PFAM: ATPase-like, ATP-binding domain YP_004248310.1 PFAM: Fe-S cluster; 4Fe-4S binding domain; KEGG: ssm:Spirs_3657 Fe-S cluster domain protein YP_004248311.1 PFAM: peptidase M16, C-terminal; peptidase M16C associated; KEGG: ssm:Spirs_3660 peptidase M16C associated domain protein YP_004248312.1 KEGG: vfm:VFMJ11_2220 endonuclease IV; PFAM: Xylose isomerase, TIM barrel domain; TIGRFAM: endodeoxyribonuclease IV; HAMAP: endodeoxyribonuclease IV; SMART: endodeoxyribonuclease IV YP_004248313.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: ssm:Spirs_3903 glycerophosphoryl diester phosphodiesterase YP_004248314.1 KEGG: ssm:Spirs_3904 hypothetical protein YP_004248316.1 TIGRFAM: peptidase M20B, tripeptide aminopeptidase; KEGG: ssm:Spirs_3909 peptidase T; PFAM: peptidase M20, dimerisation; peptidase M20 YP_004248319.1 KEGG: bta:280867 proteoglycan 4 YP_004248321.1 PFAM: transposase, IS4-like; KEGG: cli:Clim_2142 transposase IS4 family protein YP_004248325.1 SMART: Iron hydrogenase, small subunit-like; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; TIGRFAM: Iron hydrogenase, subset; KEGG: ssm:Spirs_3687 NAD(P)-dependent iron-only hydrogenase catalytic subunit; PFAM: Iron hydrogenase, large subunit, C-terminal; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; 4Fe-4S binding domain; Iron hydrogenase, small subunit-like YP_004248326.1 PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; 4Fe-4S binding domain; KEGG: ssm:Spirs_3688 NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein; SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding YP_004248327.1 KEGG: ssm:Spirs_3689 NAD(P)-dependent iron-only hydrogenase iron-sulfur protein YP_004248328.1 KEGG: ssm:Spirs_3690 histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain YP_004248329.1 PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: ssm:Spirs_3691 NADH-quinone oxidoreductase, E subunit YP_004248330.1 HAMAP: transcriptional repressor, redox-sensing, Rex; PFAM: CoA-binding; Rex DNA-binding, C-terminal; KEGG: ssm:Spirs_3692 CoA-binding protein; SMART: CoA-binding YP_004248331.1 PFAM: endonuclease/exonuclease/phosphatase; KEGG: ssm:Spirs_3694 endonuclease/exonuclease/phosphatase YP_004248332.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sta:STHERM_c14020 hypothetical protein YP_004248333.1 HAMAP: peptidase S14, ClpP; KEGG: sta:STHERM_c05540 hypothetical protein; PFAM: peptidase S14, ClpP YP_004248334.1 KEGG: eel:EUBELI_20456 hypothetical protein YP_004248335.1 SMART: ATPase, AAA+ type, core; TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; KEGG: ssm:Spirs_3698 GTP-binding protein Era; HAMAP: GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2 YP_004248336.1 PFAM: NADPH-dependent FMN reductase; KEGG: cac:CA_C3341 multimeric flavodoxin WrbA family protein YP_004248337.1 PFAM: Lysyl-tRNA synthetase, class Ic; TIGRFAM: Lysyl-tRNA synthetase, class I; HAMAP: Lysyl-tRNA synthetase, class I, archaeal-type; KEGG: ssm:Spirs_3699 lysyl-tRNA synthetase YP_004248338.1 KEGG: ssm:Spirs_0552 lipoprotein A; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Barwin-related endoglucanase YP_004248339.1 PFAM: FAD dependent oxidoreductase; KEGG: bph:Bphy_6289 FAD dependent oxidoreductase YP_004248341.1 PFAM: Integrase, N-terminal SAM-like, phage; Integrase, catalytic core, phage; KEGG: ssm:Spirs_1738 hypothetical protein YP_004248343.1 KEGG: ebi:EbC_pEb10200480 hypothetical protein YP_004248344.1 KEGG: fra:Francci3_0890 hypothetical protein YP_004248347.1 TIGRFAM: Excisionase/Xis, DNA-binding YP_004248348.1 PFAM: HTH transcriptional regulator, MerR YP_004248351.1 KEGG: cth:Cthe_2466 hypothetical protein YP_004248352.1 PFAM: DNA helicase, DnaB-like, C-terminal; KEGG: sta:STHERM_c13140 hypothetical protein YP_004248355.1 KEGG: sta:STHERM_c13180 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_004248356.1 KEGG: ssm:Spirs_2175 hypothetical protein YP_004248357.1 PFAM: ERF; KEGG: cpy:Cphy_2988 hypothetical protein YP_004248358.1 KEGG: amr:AM1_2899 hypothetical protein YP_004248361.1 PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004248362.1 PFAM: Integrase, catalytic core; KEGG: bha:BH3965 transposase (22) YP_004248363.1 KEGG: amt:Amet_4685 IstB ATP binding domain-containing protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004248368.1 PFAM: Uncharacterised protein family UPF0758; KEGG: ssm:Spirs_2477 DNA repair protein RadC YP_004248370.1 KEGG: cbi:CLJ_0109 hypothetical protein YP_004248371.1 PFAM: Domain of unknown function DUF1738; KEGG: gem:GM21_1461 domain of unknown function DUF1738 YP_004248379.1 KEGG: aai:AARI_36250 transposase of ISAar33, IS21 family, IstA YP_004248381.1 KEGG: amc:MADE_00823 phage uncharacterized protein YP_004248383.1 PFAM: DNA methylase N-4/N-6; KEGG: sfu:Sfum_2856 DNA methylase N-4/N-6 domain-containing protein YP_004248384.1 PFAM: Restriction endonuclease, type I, R subunit/type III, Res subunit; KEGG: dau:Daud_0199 type III restriction enzyme, res subunit YP_004248385.1 KEGG: shi:Shel_27120 hypothetical protein YP_004248386.1 KEGG: gem:GM21_2414 hypothetical protein YP_004248387.1 KEGG: dol:Dole_3047 hypothetical protein YP_004248391.1 KEGG: shi:Shel_27120 hypothetical protein YP_004248392.1 KEGG: afl:Aflv_2632 IstB-like ATP-binding protein; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004248393.1 PFAM: Integrase, catalytic core; KEGG: tte:TTE1156 integrase core subunit YP_004248394.1 PFAM: Helicase, C-terminal; KEGG: bvu:BVU_3754 hypothetical protein YP_004248395.1 KEGG: drt:Dret_1539 hypothetical protein YP_004248396.1 KEGG: esa:ESA_pESA3p05521 hypothetical protein YP_004248398.1 PFAM: transposase IS200-like; KEGG: lsl:LSL_0050 IS200 family transposase YP_004248399.1 KEGG: abb:ABBFA_000219 hypothetical protein YP_004248402.1 KEGG: ipo:Ilyop_0835 hypothetical protein YP_004248404.1 PFAM: RNA polymerase, subunit alpha, C-terminal; KEGG: fma:FMG_0966 hypothetical protein YP_004248406.1 KEGG: app:CAP2UW1_4401 hypothetical protein YP_004248407.1 KEGG: ccb:Clocel_3315 regulator of chromosome condensation RCC1; TIGRFAM: Listeria/Bacterioides repeat; PFAM: Listeria/Bacterioides repeat YP_004248410.1 KEGG: ssm:Spirs_1466 hypothetical protein YP_004248412.1 KEGG: ssm:Spirs_1466 hypothetical protein YP_004248413.1 PFAM: Tetratricopeptide TPR2; KEGG: bvu:BVU_0750 TPR domain-containing protein YP_004248414.1 manually curated; KEGG: aca:ACP_0065 transcriptional regulator, LacI family YP_004248415.1 KEGG: gym:GYMC10_4394 tetratricopeptide TPR_2 repeat protein YP_004248416.1 PFAM: Signal transduction histidine kinase, internal region; HAMP linker domain; ATPase-like, ATP-binding domain; KEGG: ccb:Clocel_3841 multi-sensor signal transduction histidine kinase YP_004248417.1 KEGG: chd:Calhy_0089 two component transcriptional regulator, AraC family; PFAM: Signal transduction response regulator, receiver domain; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; Signal transduction response regulator, receiver domain YP_004248418.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: pjd:Pjdr2_0778 extracellular solute-binding protein family 1 YP_004248419.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: pjd:Pjdr2_0779 binding-protein-dependent transport systems inner membrane component YP_004248420.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ttr:Tter_2528 binding-protein-dependent transport systems inner membrane component YP_004248421.1 KEGG: cbe:Cbei_2356 hypothetical protein YP_004248422.1 PFAM: transposase, IS4-like; KEGG: cli:Clim_2142 transposase IS4 family protein YP_004248423.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: cce:Ccel_0941 xylose isomerase domain protein TIM barrel YP_004248424.1 PFAM: ABC transporter permease; KEGG: ypz:YPZ3_3125 ABC transporter permease YP_004248425.1 PFAM: ABC transporter permease; KEGG: ssm:Spirs_0217 inner-membrane translocator YP_004248426.1 PFAM: ABC transporter-like; KEGG: ssm:Spirs_0216 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004248427.1 KEGG: ssm:Spirs_0215 ABC transporter substrate-binding protein YP_004248428.1 KEGG: htu:Htur_1435 lactoylglutathione lyase-like protein YP_004248429.1 PFAM: Sugar isomerase (SIS); KEGG: gmc:GY4MC1_3094 6-phospho 3-hexuloisomerase YP_004248430.1 KEGG: cwo:Cwoe_2271 hypothetical protein YP_004248431.1 KEGG: ssm:Spirs_4210 transcriptional regulator, DeoR family; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004248432.1 KEGG: bth:BT_1713 acylneuraminate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase YP_004248433.1 KEGG: kol:Kole_0162 carbohydrate kinase FGGY; PFAM: carbohydrate kinase, FGGY, N-terminal; carbohydrate kinase, FGGY, C-terminal YP_004248434.1 PFAM: Haloacid dehalogenase-like hydrolase; KEGG: cbt:CLH_2782 probable hydrolase YP_004248435.1 KEGG: kvu:EIO_1060 5-methylthioadenosine/S-adenosylhomocysteine deaminase; PFAM: Amidohydrolase 1 YP_004248436.1 PFAM: ABC transporter permease; KEGG: aoe:Clos_2377 inner-membrane translocator YP_004248437.1 PFAM: ABC transporter permease; KEGG: ttm:Tthe_2237 inner-membrane translocator YP_004248438.1 PFAM: ABC transporter-like; KEGG: tle:Tlet_1045 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004248439.1 PFAM: Basic membrane lipoprotein; KEGG: hor:Hore_00670 basic membrane lipoprotein YP_004248440.1 KEGG: sea:SeAg_B1546 hypothetical protein; TIGRFAM: Photosystem I BtpA, assembly; PFAM: Photosystem I BtpA, assembly YP_004248441.1 KEGG: DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal YP_004248442.1 KEGG: mac:MA2009 beta-lactamase; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004248443.1 PFAM: protein of unknown function DUF2132; KEGG: pph:Ppha_1619 hypothetical protein YP_004248444.1 KEGG: ppr:PBPRB1930 hypothetical protein; TIGRFAM: protein of unknown function DUF2196; PFAM: protein of unknown function DUF2196 YP_004248445.1 KEGG: swo:Swol_1074 DNA-damage-inducibile protein; TIGRFAM: RelB antitoxin; PFAM: RelB antitoxin YP_004248446.1 KEGG: sga:GALLO_1564 hypothetical protein; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system YP_004248448.1 KEGG: bpb:bpr_III244 sugar ABC transporter substrate-binding protein YP_004248449.1 PFAM: ABC transporter-like; KEGG: bpb:bpr_III243 sugar ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004248450.1 PFAM: ABC transporter permease; KEGG: bpb:bpr_III242 sugar ABC transporter permease YP_004248451.1 PFAM: ABC transporter permease; KEGG: bpb:bpr_III241 sugar ABC transporter permease YP_004248452.1 KEGG: ssm:Spirs_3422 two component transcriptional regulator, AraC family; PFAM: Signal transduction response regulator, receiver domain; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; Signal transduction response regulator, receiver domain YP_004248453.1 KEGG: ssm:Spirs_3423 integral membrane sensor signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, internal region; HAMP linker domain; ATPase-like, ATP-binding domain; SMART: HAMP linker domain; ATPase-like, ATP-binding domain YP_004248454.1 PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: ssm:Spirs_3424 periplasmic binding protein/LacI transcriptional regulator YP_004248455.1 KEGG: dfe:Dfer_2862 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004248456.1 KEGG: elm:ELI_1175 hypothetical protein; TIGRFAM: Listeria/Bacterioides repeat; PFAM: Listeria/Bacterioides repeat YP_004248458.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cbi:CLJ_B1068 transcriptional regulator, TetR family YP_004248459.1 KEGG: hypothetical protein YP_004248460.1 PFAM: Integrase, catalytic core; KEGG: ajs:Ajs_3050 integrase catalytic subunit YP_004248465.1 SMART: glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Sucrose phosphorylase, GftA; KEGG: sss:SSUSC84_1399 sucrose phosphorylase; PFAM: glycosyl hydrolase, family 13, catalytic domain YP_004248466.1 KEGG: thx:Thet_1793 LacI family transcriptional regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004248467.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: bde:BDP_0114 sugar ABC uptake system, permease component YP_004248468.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ttm:Tthe_1926 binding-protein-dependent transport systems inner membrane component YP_004248469.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: thx:Thet_1798 extracellular solute-binding protein family 1 YP_004248470.1 KEGG: shi:Shel_27120 hypothetical protein YP_004248471.1 PFAM: mandelate racemase/muconate lactonizing enzyme, C-terminal; mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: pjd:Pjdr2_4222 mandelate racemase/muconate lactonizing protein; SMART: mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004248472.1 KEGG: pjd:Pjdr2_4223 demethylmenaquinone methyltransferase-like protein YP_004248473.1 PFAM: extracellular solute-binding protein, family 7, bacteria; KEGG: ssm:Spirs_4174 TRAP dicarboxylate transporter DctP subunit YP_004248474.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: has:Halsa_0490 tripartite ATP-independent periplasmic transporter DctQ component YP_004248475.1 KEGG: has:Halsa_0491 TRAP dicarboxylate transporter DctM subunit; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit YP_004248476.1 KEGG: fabG2; 3-oxoacyl-; PFAM: Short-chain dehydrogenase/reductase SDR YP_004248477.1 PFAM: beta-lactamase-like; KEGG: sli:Slin_6275 hypothetical protein YP_004248478.1 KEGG: dfe:Dfer_0595 mannonate dehydratase; PFAM: Mannonate dehydratase YP_004248479.1 KEGG: pjd:Pjdr2_3613 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004248480.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: ote:Oter_2742 N-acylglucosamine 2-epimerase YP_004248481.1 KEGG: shi:Shel_24010 GDSL-like lipase/acylhydrolase YP_004248482.1 PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: eel:EUBELI_01107 hypothetical protein YP_004248483.1 TIGRFAM: dihydrolipoamide dehydrogenase; KEGG: gca:Galf_0424 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004248484.1 KEGG: tgr:Tgr7_2455 dihydrolipoyllysine-residue succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004248485.1 TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type; KEGG: tgr:Tgr7_2456 pyruvate dehydrogenase subunit E1; PFAM: transketolase, N-terminal YP_004248486.1 KEGG: ssm:Spirs_1956 cell wall/surface repeat protein; TIGRFAM: Listeria/Bacterioides repeat; PFAM: Listeria/Bacterioides repeat YP_004248488.1 KEGG: dae:Dtox_2248 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004248489.1 PFAM: protein of unknown function DUF955; KEGG: dae:Dtox_2247 protein of unknown function DUF955 YP_004248490.1 KEGG: dae:Dtox_2246 hypothetical protein YP_004248491.1 PFAM: ThiJ/PfpI; KEGG: mpi:Mpet_1721 ThiJ/PfpI domain-containing protein YP_004248492.1 KEGG: elm:ELI_3261 hypothetical protein YP_004248493.1 KEGG: ele:Elen_0505 hypothetical protein YP_004248494.1 KEGG: dps:DP2046 hypothetical protein YP_004248495.1 manually curated YP_004248496.1 PFAM: Bacterial transcription activator, effector binding; KEGG: cpy:Cphy_3129 hypothetical protein YP_004248497.1 PFAM: carbohydrate kinase, FGGY, N-terminal; KEGG: aac:Aaci_0788 carbohydrate kinase, FGGY-like protein YP_004248498.1 KEGG: csh:Closa_2706 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain YP_004248499.1 KEGG: csh:Closa_3500 hypothetical protein YP_004248501.1 KEGG: lch:Lcho_3430 filamentous haemagglutinin outer membrane protein YP_004248502.1 KEGG: csh:Closa_3501 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain YP_004248503.1 KEGG: csh:Closa_3500 hypothetical protein YP_004248505.1 KEGG: pin:Ping_2394 filamentous haemagglutinin outer membrane protein YP_004248507.1 KEGG: ere:EUBREC_3474 hypothetical protein YP_004248508.1 PFAM: ABC transporter-like; KEGG: cpy:Cphy_2010 ABC transporter related; SMART: ATPase, AAA+ type, core YP_004248509.1 PFAM: ABC transporter permease; KEGG: cpy:Cphy_2011 monosaccharide-transporting ATPase YP_004248510.1 KEGG: cpy:Cphy_2012 periplasmic binding protein/LacI transcriptional regulator YP_004248511.1 KEGG: cce:Ccel_1005 transcriptional regulator, LacI family; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004248512.1 KEGG: enc:ECL_04430 hypothetical protein YP_004248516.1 PFAM: beta-lactamase-related; KEGG: tro:trd_A0708 beta-lactamase YP_004248517.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: ssm:Spirs_1160 GCN5-related N-acetyltransferase YP_004248518.1 manually curated; PFAM: mandelate racemase/muconate lactonizing enzyme, C-terminal; KEGG: opr:Ocepr_0187 mandelate racemase/muconate lactonizing protein; SMART: mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004248519.1 SMART: ATPase, AAA+ type, core; TIGRFAM: oligopeptide/dipeptide ABC transporter ATP-binding protein, C-terminal; KEGG: sta:STHERM_c02800 oligopeptide/dipeptide ABC transporter ATPase; PFAM: ABC transporter-like; oligopeptide/dipeptide ABC transporter C-terminal YP_004248520.1 SMART: ATPase, AAA+ type, core; TIGRFAM: oligopeptide/dipeptide ABC transporter ATP-binding protein, C-terminal; KEGG: sta:STHERM_c02790 oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein; PFAM: ABC transporter-like; oligopeptide/dipeptide ABC transporter C-terminal YP_004248521.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ssm:Spirs_1156 binding-protein-dependent transport systems inner membrane component YP_004248522.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: sti:Sthe_1512 binding-protein-dependent transport systems inner membrane component YP_004248523.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: ssm:Spirs_1154 extracellular solute-binding protein family 5 YP_004248524.1 KEGG: gym:GYMC10_5633 anhydro-N-acetylmuramic acid kinase; HAMAP: Anhydro-N-acetylmuramic acid kinase; PFAM: Anhydro-N-acetylmuramic acid kinase YP_004248525.1 KEGG: pmr:PMI3138 phosphosugar binding/isomerase; TIGRFAM: N-acetylmuramic acid 6-phosphate etherase; HAMAP: N-acetylmuramic acid 6-phosphate etherase YP_004248526.1 PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: cbe:Cbei_1920 RpiR family transcriptional regulator YP_004248527.1 KEGG: msi:Msm_0690 helicase; PFAM: Restriction endonuclease, type I, R subunit/type III, Res subunit; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004248528.1 PFAM: Uncharacterised conserved protein UCP033199; KEGG: uncharacterized conserved protein UCP033199 YP_004248529.1 KEGG: ipo:Ilyop_2930 transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004248530.1 PFAM: Cupin 2, conserved barrel; KEGG: pas:Pars_0865 cupin 2 domain-containing protein YP_004248531.1 KEGG: pna:Pnap_4043 TRAP dicarboxylate transporter DctP subunit; TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: extracellular solute-binding protein, family 7, bacteria YP_004248532.1 KEGG: hel:HELO_1150 TRAP transporter large transmembrane protein; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit YP_004248533.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: cef:CE2240 C4-dicarboxylate permease small protein YP_004248535.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: drm:Dred_2700 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004248536.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; Uncharacterised protein family HDIG; PFAM: Diguanylate cyclase, predicted; HAMP linker domain; PAS fold; metal-dependent phosphohydrolase, HD subdomain; KEGG: csh:Closa_2542 diguanylate cyclase and metal dependent phosphohydrolase; SMART: Diguanylate cyclase, predicted; HAMP linker domain; PAS; metal-dependent phosphohydrolase, HD domain YP_004248537.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: regulatory protein TetR YP_004248538.1 PFAM: FMN-binding; KEGG: tle:Tlet_1035 FMN-binding domain-containing protein YP_004248540.1 PFAM: TfoX, N-terminal; KEGG: pmz:HMPREF0659_A5556 TfoX N-terminal domain protein YP_004248542.1 KEGG: cth:Cthe_3128 iron-sulfur flavoprotein YP_004248543.1 PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal; TIGRFAM: aspartate ammonia-lyase; HAMAP: fumarate hydratase, class II; KEGG: ade:Adeh_1757 aspartate ammonia-lyase YP_004248544.1 KEGG: XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004248546.1 KEGG: ckr:CKR_2226 hypothetical protein; PFAM: FMN-binding; SMART: FMN-binding YP_004248547.1 PFAM: thiamine synthesis ApbE/UPF0280; KEGG: has:Halsa_0887 ApbE family lipoprotein YP_004248548.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ckr:CKR_2227 hypothetical protein YP_004248549.1 PFAM: AIG2-like; KEGG: cpf:CPF_1677 hypothetical protein YP_004248550.1 PFAM: peptidase C15, pyroglutamyl peptidase I; TIGRFAM: peptidase C15, pyroglutamyl peptidase I; HAMAP: peptidase C15, pyroglutamyl peptidase I; KEGG: cpe:CPE1425 pyrrolidone-carboxylate peptidase YP_004248551.1 PFAM: protein of unknown function DUF979; KEGG: membrane protein YP_004248552.1 PFAM: protein of unknown function DUF969; KEGG: cpe:CPE1427 hypothetical protein YP_004248554.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: drm:Dred_2700 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004248555.1 KEGG: clj:CLJU_c30120 phosphoglycerate dehydrogenase-like protein; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_004248556.1 KEGG: mag:amb1840 response regulator; PFAM: Signal transduction response regulator, receiver domain; metal-dependent phosphohydrolase, HD subdomain; SMART: Signal transduction response regulator, receiver domain; metal-dependent phosphohydrolase, HD domain YP_004248557.1 KEGG: cst:CLOST_1047 histidine kinase; PFAM: ATPase-like, ATP-binding domain; extracellular solute-binding protein, family 3; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; extracellular solute-binding protein, family 3; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain YP_004248558.1 PFAM: alpha/beta hydrolase fold-1; KEGG: cbi:CLJ_B0296 hypothetical protein YP_004248560.1 KEGG: amt:Amet_0553 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004248561.1 PFAM: extracellular solute-binding protein, family 7, bacteria; KEGG: sta:STHERM_c04190 transporter YP_004248562.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: chd:Calhy_0506 tripartite ATP-independent periplasmic transporter DctQ component YP_004248563.1 KEGG: sta:STHERM_c04210 transporter; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004248564.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: ssm:Spirs_0745 xylose isomerase domain protein TIM barrel YP_004248565.1 PFAM: Amidohydrolase 1; TIGRFAM: adenine deaminase; HAMAP: adenine deaminase; KEGG: dps:DP1374 adenine deaminase YP_004248567.1 PFAM: xanthine/uracil/vitamin C permease; KEGG: dps:DP1375 hypothetical protein YP_004248568.1 HAMAP: adenine deaminase; KEGG: dps:DP1373 adenine deaminase; PFAM: Amidohydrolase 1 YP_004248569.1 KEGG: bhy:BHWA1_00120 hypothetical protein YP_004248570.1 KEGG: csh:Closa_1023 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead YP_004248571.1 KEGG: csh:Closa_1024 molybdopterin dehydrogenase FAD-binding protein; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal YP_004248572.1 KEGG: csh:Closa_1025 (2Fe-2S)-binding domain protein; PFAM: [2Fe-2S]-binding; ferredoxin YP_004248573.1 PFAM: Heavy metal transport/detoxification protein; KEGG: sub:SUB1180 putive copper chaperone CopZ YP_004248574.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: sub:SUB1181 copper importing ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase YP_004248575.1 KEGG: sub:SUB1182 hypothetical protein YP_004248576.1 TIGRFAM: Ketopantoate reductase ApbA/PanE; KEGG: pde:Pden_4530 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, C-terminal; Ketopantoate reductase ApbA/PanE, N-terminal YP_004248577.1 KEGG: ant:Arnit_1984 RNP-1 like RNA-binding protein; PFAM: RNA recognition motif domain; SMART: RNA recognition motif domain YP_004248578.1 KEGG: dbr:Deba_0210 D-alanine--D-alanine ligase domain protein YP_004248579.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: bcl:ABC2561 hypothetical protein YP_004248580.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: psl:Psta_3376 GCN5-related N-acetyltransferase YP_004248581.1 PFAM: D-alanine--D-alanine ligase, C-terminal; KEGG: sfu:Sfum_0713 D-alanine--D-alanine ligase domain-containing protein YP_004248582.1 KEGG: dde:Dde_3042 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase, C-terminal YP_004248583.1 TIGRFAM: Conserved hyprothetical protein CHP00238, KamA; KEGG: dat:HRM2_13250 KamA2; PFAM: radical SAM YP_004248584.1 KEGG: amt:Amet_3459 hypothetical protein YP_004248585.1 PFAM: Mechanosensitive ion channel MscS; KEGG: slt:Slit_1240 MscS mechanosensitive ion channel YP_004248586.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; GCN5-related N-acetyltransferase (GNAT) domain; KEGG: dsa:Desal_0288 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS YP_004248587.1 KEGG: deh:cbdb_A1332 hypothetical protein YP_004248588.1 KEGG: det:DET0624 response regulator; PFAM: Signal transduction response regulator, receiver domain; metal-dependent phosphohydrolase, HD subdomain; SMART: Signal transduction response regulator, receiver domain; metal-dependent phosphohydrolase, HD domain YP_004248589.1 PFAM: methyltransferase type 11; KEGG: ipo:Ilyop_1175 methyltransferase type 11 YP_004248590.1 KEGG: nve:NEMVE_v1g248697 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02452; PFAM: protein of unknown function DUF2263 YP_004248591.1 KEGG: cce:Ccel_0191 Appr-1-p processing domain protein; PFAM: Appr-1-p processing; SMART: Appr-1-p processing YP_004248592.1 KEGG: cce:Ccel_0193 hypothetical protein YP_004248593.1 KEGG: toc:Toce_1346 extracellular solute-binding protein family 3 YP_004248594.1 PFAM: ABC transporter-like; KEGG: bra:BRADO4271 sulfonate ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004248595.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: hor:Hore_14750 binding-protein-dependent transport systems inner membrane component YP_004248596.1 PFAM: NADPH-dependent FMN reductase; KEGG: hau:Haur_1668 NADPH-dependent FMN reductase YP_004248598.1 KEGG: kol:Kole_1315 transcriptional regulator YP_004248599.1 PFAM: protein of unknown function DUF1814; KEGG: ccu:Ccur_11430 protein of unknown function (DUF1814) YP_004248600.1 KEGG: fjo:Fjoh_4182 hypothetical protein YP_004248601.1 KEGG: uracil-xanthine permease; TIGRFAM: xanthine/uracil permease; PFAM: xanthine/uracil/vitamin C permease YP_004248602.1 KEGG: nca:Noca_4271 xanthine dehydrogenase, molybdenum binding subunit apoprotein; PFAM: aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead YP_004248603.1 KEGG: nca:Noca_4272 2Fe-2S iron-sulfur cluster binding domain-containing protein; PFAM: [2Fe-2S]-binding; ferredoxin YP_004248604.1 PFAM: Molybdopterin dehydrogenase, FAD-binding; KEGG: nca:Noca_4273 molybdopterin dehydrogenase, FAD-binding YP_004248605.1 KEGG: mta:Moth_2123 hypothetical protein YP_004248606.1 KEGG: cms:CMS_2363 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004248607.1 PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: clj:CLJU_c23620 nucleic acid-binding protein YP_004248608.1 KEGG: clj:CLJU_c23630 acetyl-CoA acetyltransferase YP_004248609.1 KEGG: clj:CLJU_c23640 hypothetical protein YP_004248610.1 PFAM: cyclase; KEGG: hypothetical protein YP_004248611.1 PFAM: protein of unknown function DUF1116; KEGG: protein of unknown function DUF1116 YP_004248613.1 KEGG: dsy:DSY0720 hypothetical protein; PFAM: RES; SMART: RES YP_004248614.1 KEGG: sae:NWMN_0141 hypothetical protein YP_004248615.1 KEGG: dsy:DSY0719 hypothetical protein YP_004248616.1 KEGG: ote:Oter_2247 restriction endonuclease YP_004248617.1 PFAM: protein of unknown function DUF2075; KEGG: bao:BAMF_0669 uncharacterized protein YPL245W YP_004248618.1 SMART: Helix-turn-helix type 3; KEGG: gwc:GWCH70_1293 MazG nucleotide pyrophosphohydrolase YP_004248619.1 PFAM: DNA mismatch repair MutH/Restriction endonuclease, type II, EcoRV-like; KEGG: tdn:Suden_1854 DNA mismatch repair enzyme MutH; SMART: DNA mismatch repair MutH/Restriction endonuclease, type II, EcoRV-like YP_004248620.1 KEGG: cpy:Cphy_2923 hypothetical protein YP_004248621.1 KEGG: cpy:Cphy_2922 SNF2-related protein; PFAM: SNF2-related; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004248623.1 TIGRFAM: C-5 cytosine methyltransferase; KEGG: cpf:CPF_1017 DNA-cytosine methyltransferase; PFAM: C-5 cytosine methyltransferase YP_004248624.1 KEGG: hnh endonuclease YP_004248625.1 PFAM: alpha/beta hydrolase fold-1; KEGG: cyt:cce_0142 hypothetical protein YP_004248626.1 PFAM: rubrerythrin; KEGG: has:Halsa_0800 rubrerythrin YP_004248627.1 KEGG: rrs:RoseRS_2344 PAS/PAC sensor signal transduction histidine kinase; PFAM: HTH transcriptional regulator, AraC; Periplasmic binding protein/LacI transcriptional regulator; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004248628.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: mrb:Mrub_0279 extracellular solute-binding protein family 1 YP_004248629.1 KEGG: htu:Htur_4778 hypothetical protein YP_004248630.1 manually curated; KEGG: rca:Rcas_1611 hypothetical protein YP_004248631.1 PFAM: protein of unknown function DUF1814; KEGG: rca:Rcas_1610 hypothetical protein YP_004248632.1 KEGG: ele:Elen_0484 hypothetical protein YP_004248633.1 KEGG: ssm:Spirs_2549 transcriptional regulator, LuxR family; PFAM: transcription regulator LuxR, C-terminal; SMART: transcription regulator LuxR, C-terminal YP_004248634.1 PFAM: alpha/beta hydrolase fold-1; KEGG: hor:Hore_20570 alpha/beta hydrolase fold protein YP_004248635.1 KEGG: dbr:Deba_2554 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004248636.1 KEGG: ttr:Tter_2534 hypothetical protein YP_004248637.1 KEGG: csc:Csac_2748 glycoside hydrolase family protein; PFAM: glycoside hydrolase, family 4 YP_004248638.1 KEGG: cpy:Cphy_0618 two component AraC family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; Signal transduction response regulator, receiver domain YP_004248639.1 PFAM: Signal transduction histidine kinase, internal region; ATPase-like, ATP-binding domain; KEGG: chd:Calhy_0144 signal transduction histidine kinase, LytS YP_004248640.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: chd:Calhy_0142 binding-protein-dependent transport systems inner membrane component YP_004248641.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: ate:Athe_2375 binding-protein-dependent transport systems inner membrane component YP_004248642.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ate:Athe_2376 extracellular solute-binding protein family 1 YP_004248643.1 PFAM: Amidohydrolase 2; KEGG: ssa:SSA_2083 hypothetical protein YP_004248644.1 KEGG: hypothetical protein YP_004248645.1 PFAM: hypothetical protein; KEGG: sna:Snas_5567 abortive infection protein YP_004248646.1 KEGG: cmi:CMM_2750 hypothetical protein YP_004248647.1 KEGG: sna:Snas_3206 hypothetical protein YP_004248648.1 PFAM: Domain of unknown function DUF523; KEGG: ipo:Ilyop_2158 protein of unknown function DUF523 YP_004248649.1 PFAM: YibE/F-like; KEGG: ccb:Clocel_2510 YibE/F family protein YP_004248650.1 PFAM: alkaline phosphatase; KEGG: ccb:Clocel_2509 alkaline phosphatase; SMART: alkaline phosphatase YP_004248651.1 KEGG: pvi:Cvib_0082 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease YP_004248652.1 PFAM: ADP-ribosylation/crystallin J1; KEGG: cpb:Cphamn1_1670 ADP-ribosylation/crystallin J1 YP_004248653.1 PFAM: aldose 1-epimerase; KEGG: ppn:Palpr_0920 aldose 1-epimerase YP_004248654.1 KEGG: pgn:PGN_1124 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein YP_004248655.1 PFAM: Nodulation efficiency, NfeD; KEGG: tme:Tmel_1329 hypothetical protein YP_004248656.1 KEGG: cpy:Cphy_2141 two component AraC family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; Signal transduction response regulator, receiver domain YP_004248657.1 KEGG: gct:GC56T3_1615 multi-sensor signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, internal region; HAMP linker domain; ATPase-like, ATP-binding domain; SMART: HAMP linker domain YP_004248658.1 PFAM: inositol monophosphatase; KEGG: cbg:CbuG_0877 myo-inositol-1(or 4)-monophosphatase YP_004248659.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: csh:Closa_2531 binding-protein-dependent transport systems inner membrane component YP_004248660.1 KEGG: shi:Shel_27120 hypothetical protein YP_004248661.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: csh:Closa_2531 binding-protein-dependent transport systems inner membrane component YP_004248662.1 PFAM: ABC transporter-like; transport-associated OB, type 2; KEGG: csh:Closa_2532 ABC transporter; SMART: ATPase, AAA+ type, core YP_004248663.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: sth:STH1157 iron ABC transporter substrate-binding protein YP_004248664.1 KEGG: bta:100301201 hypothetical protein LOC100301201 YP_004248665.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: diguanylate cyclase/phosphodiesterase with extracellular sensor; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted YP_004248666.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165; KEGG: mac:MA2406 transposase YP_004248667.1 PFAM: methyltransferase type 11; KEGG: chd:Calhy_0017 methyltransferase type 11 YP_004248668.1 SMART: transketolase-like, pyrimidine-binding domain; TIGRFAM: transketolase, bacterial-like; KEGG: vco:VC0395_0565 transketolase; PFAM: transketolase, N-terminal; transketolase-like, pyrimidine-binding domain; transketolase, C-terminal YP_004248669.1 KEGG: ipo:Ilyop_0227 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004248670.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: rlt:Rleg2_5297 hypothetical protein YP_004248671.1 KEGG: pna:Pnap_1552 glyoxalase/bleomycin resistance protein/dioxygenase YP_004248672.1 KEGG: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_004248673.1 KEGG: gct:GC56T3_1465 TRAP dicarboxylate transporter DctP subunit; TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: extracellular solute-binding protein, family 7, bacteria YP_004248674.1 KEGG: oih:OB3255 C4-dicarboxylate transporter permease large protein; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit YP_004248675.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bcl:ABC4078 C4-dicarboxylate transporter permease small protein YP_004248676.1 KEGG: ssm:Spirs_3719 hypothetical protein YP_004248677.1 PFAM: phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; KEGG: ssm:Spirs_3914 PTS IIA-like nitrogen-regulatory protein PtsN YP_004248678.1 PFAM: Cation/H+ exchanger; KEGG: ssm:Spirs_3913 sodium/hydrogen exchanger YP_004248679.1 PFAM: Lipase, GDSL; KEGG: bld:BLi04100 hypothetical protein YP_004248681.1 KEGG: two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; transcription regulator LuxR, C-terminal YP_004248682.1 PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: integral membrane sensor signal transduction histidine kinase YP_004248683.1 PFAM: ABC transporter; KEGG: ABC-2 type transporter YP_004248684.1 PFAM: ABC transporter; KEGG: amt:Amet_3718 ABC-2 type transporter YP_004248685.1 PFAM: ABC transporter-like; KEGG: gym:GYMC10_4433 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004248686.1 PFAM: peroxiredoxin, OsmC-like protein; KEGG: nde:NIDE3895 peroxiredoxin OsmC YP_004248687.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: beta-lactamase-like; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain; KEGG: nam:NAMH_0079 diguanylate cyclase (GGDEF) domain protein; SMART: beta-lactamase-like; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver domain YP_004248688.1 PFAM: glycosyl transferase, family 2; Fungal chitin synthase; KEGG: ttr:Tter_2189 glycosyl transferase family 2 YP_004248689.1 KEGG: cvi:CV_0096 hypothetical protein YP_004248690.1 PFAM: polysaccharide deacetylase; KEGG: gme:Gmet_2023 polysaccharide deacetylase YP_004248691.1 PFAM: protein of unknown function DUF422; KEGG: mtt:Ftrac_1977 hypothetical protein YP_004248692.1 KEGG: mth:MTH1808 phytoene synthase; PFAM: Squalene/phytoene synthase YP_004248693.1 KEGG: mem:Memar_0116 phytoene dehydrogenase-related protein; TIGRFAM: Zeta-phytoene desaturase; PFAM: Amine oxidase YP_004248694.1 KEGG: sgo:SGO_0119 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00022; PFAM: Conserved hypothetical protein CHP00022 YP_004248695.1 KEGG: mac:MA0334 uncharacterized membrane protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein YP_004248696.1 TIGRFAM: alpha-acetolactate decarboxylase; KEGG: pth:PTH_2358 alpha-acetolactate decarboxylase; PFAM: alpha-acetolactate decarboxylase YP_004248697.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: srt:Srot_1727 glyoxalase/bleomycin resistance protein/dioxygenase YP_004248698.1 PFAM: SAF domain; KEGG: rru:Rru_A3141 homoserine dehydrogenase, NAD-binding YP_004248699.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: ssm:Spirs_1256 protein of unknown function DUF112 transmembrane YP_004248700.1 KEGG: ssm:Spirs_1257 hypothetical protein YP_004248701.1 KEGG: ssm:Spirs_1258 hypothetical protein YP_004248702.1 TIGRFAM: PAS; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, propionate catabolism activator, N-terminal; PAS fold; Helix-turn-helix, Fis-type; KEGG: ssm:Spirs_1662 proprionate catabolism activator, fis family; SMART: ATPase, AAA+ type, core; PAS YP_004248703.1 KEGG: pol:Bpro_2208 TRAP dicarboxylate transporter-DctP subunit; TIGRFAM: TRAP dicarboxylate transporter DctP subunit; PFAM: extracellular solute-binding protein, family 7, bacteria YP_004248704.1 PFAM: tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pol:Bpro_2207 tripartite ATP-independent periplasmic transporter DctQ YP_004248705.1 KEGG: pol:Bpro_2206 TRAP dicarboxylate transporter-DctM subunit; TIGRFAM: TRAP dicarboxylate transporter DctM subunit; PFAM: TRAP C4-dicarboxylate transporter permease DctM subunit YP_004248706.1 PFAM: dihydrodipicolinate synthetase; KEGG: gym:GYMC10_3581 dihydrodipicolinate synthetase YP_004248707.1 KEGG: pcl:Pcal_1422 2-dehydro-3-deoxyglucarate aldolase; PFAM: aldehyde-lyase domain YP_004248708.1 KEGG: aar:Acear_1803 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004248709.1 PFAM: cobalamin (vitamin B12)-binding; KEGG: cst:CLOST_0398 hypothetical protein YP_004248710.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: cst:CLOST_0399 hypothetical protein; SMART: Diguanylate cyclase, predicted YP_004248711.1 KEGG: dhd:Dhaf_1083 transcriptional regulator, MerR family; PFAM: TipAS antibiotic-recognition; HTH transcriptional regulator, MerR; transcription regulator MerR, DNA binding; SMART: HTH transcriptional regulator, MerR YP_004248712.1 PFAM: protein of unknown function DUF1538; KEGG: dhd:Dhaf_1143 protein of unknown function DUF1538 YP_004248713.1 KEGG: aoe:Clos_0657 hypothetical protein YP_004248714.1 PFAM: protein of unknown function DUF1801; KEGG: rci:RCIX1712 hypothetical protein YP_004248715.1 KEGG: ace:Acel_1715 aldo/keto reductase; manually curated; PFAM: NADP-dependent oxidoreductase domain YP_004248716.1 KEGG: pjd:Pjdr2_2325 peptidase T-like protein; TIGRFAM: peptidase M20B, peptidase T; PFAM: peptidase M20; peptidase M42; peptidase M20, dimerisation YP_004248717.1 TIGRFAM: Ketopantoate reductase ApbA/PanE; KEGG: fsu:Fisuc_0919 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, C-terminal; Ketopantoate reductase ApbA/PanE, N-terminal YP_004248718.1 KEGG: ssm:Spirs_1372 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease YP_004248719.1 KEGG: tau:Tola_2293 iron-containing alcohol dehydrogenase; PFAM: alcohol dehydrogenase, iron-type YP_004248720.1 KEGG: ssm:Spirs_3643 uracil-xanthine permease; TIGRFAM: xanthine/uracil permease; PFAM: xanthine/uracil/vitamin C permease YP_004248723.1 KEGG: ote:Oter_1808 helix-turn-helix, type 11 domain-containing protein YP_004248724.1 HAMAP: phosphoenolpyruvate carboxykinase, GTP-utilising; KEGG: cth:Cthe_2874 phosphoenolpyruvate carboxykinase; PFAM: phosphoenolpyruvate carboxykinase, GTP-utilising YP_004248725.1 KEGG: met:M446_4598 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain YP_004248726.1 PFAM: peptidase U32; KEGG: sta:STHERM_c21690 hypothetical protein YP_004248727.1 PFAM: NUDIX hydrolase domain; KEGG: ccb:Clocel_0501 NUDIX hydrolase YP_004248728.1 SMART: semialdehyde dehydrogenase, NAD-binding; TIGRFAM: aspartate-semialdehyde dehydrogenase, peptidoglycan lacking; KEGG: ssm:Spirs_4027 aspartate-semialdehyde dehydrogenase; PFAM: semialdehyde dehydrogenase, NAD-binding; semialdehyde dehydrogenase, dimerisation domain YP_004248729.1 KEGG: chy:CHY_1194 PII family protein YP_004248730.1 PFAM: protein of unknown function DUF1538; KEGG: aoe:Clos_0656 hypothetical protein YP_004248731.1 KEGG: chu:CHU_0232 antifreeze-related protein YP_004248732.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ssm:Spirs_1953 CDP-alcohol phosphatidyltransferase YP_004248733.1 KEGG: tra:Trad_1173 beta-lactamase-like protein YP_004248734.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: cbe:Cbei_1440 extracellular solute-binding protein YP_004248735.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: cbe:Cbei_1441 binding-protein-dependent transport systems inner membrane component YP_004248736.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: cbe:Cbei_1442 binding-protein-dependent transport systems inner membrane component YP_004248737.1 KEGG: bpo:BP951000_0253 alpha-galactosidase/6-phospho-beta-glucosidase; PFAM: glycoside hydrolase, family 4 YP_004248738.1 KEGG: ooe:OEOE_0808 transcriptional regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004248739.1 KEGG: csh:Closa_2361 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein, family 3; SMART: extracellular solute-binding protein, family 3 YP_004248740.1 KEGG: csh:Closa_2360 polar amino acid ABC transporter inner membrane subunit; TIGRFAM: Amino acid ABC transporter permease, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transporters inner membrane component YP_004248741.1 PFAM: ABC transporter-like; KEGG: csh:Closa_2359 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004248742.1 KEGG: hypothetical protein YP_004248743.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: elm:ELI_4343 signaling protein; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted YP_004248744.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: str:Sterm_3036 LysR family transcriptional regulator YP_004248745.1 PFAM: Drug/metabolite transporter; KEGG: apv:Apar_0302 protein of unknown function DUF6 transmembrane YP_004248747.1 TIGRFAM: PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; PAS fold-3; KEGG: cst:CLOST_1048 hypothetical protein; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAC motif; PAS YP_004248748.1 KEGG: cpy:Cphy_3026 phosphotransferase domain-containing protein; PFAM: PHP, C-terminal; SMART: polymerase/histidinol phosphatase, N-terminal YP_004248749.1 PFAM: Haloacid dehalogenase-like hydrolase YP_004248750.1 KEGG: cpy:Cphy_1318 MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein YP_004248751.1 PFAM: KDPG/KHG aldolase; KEGG: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase YP_004248752.1 PFAM: Domain of unknown function DUF523; KEGG: cpy:Cphy_1311 hypothetical protein YP_004248753.1 KEGG: ssm:Spirs_4223 transcriptional regulator, AraC family; PFAM: Bacterial transcription activator, effector binding; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004248754.1 PFAM: Uncharacterised protein family UPF0066; KEGG: ssm:Spirs_4222 protein of unknown function UPF0066 YP_004248755.1 KEGG: dtu:Dtur_0626 hypothetical protein YP_004248756.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dhd:Dhaf_0017 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004248757.1 PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: gau:GAU_3690 ribosomal large subunit pseudouridine synthase A YP_004248758.1 PFAM: Domain of unknown function DUF88; KEGG: vpa:VP1078 hypothetical protein YP_004248759.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: elm:ELI_0492 hypothetical protein; SMART: Diguanylate cyclase, predicted YP_004248761.1 TIGRFAM: pyruvate kinase; KEGG: hor:Hore_03220 pyruvate kinase; PFAM: pyruvate kinase, barrel; pyruvate kinase, C-terminal-like YP_004248762.1 KEGG: sta:STHERM_c14200 transporter YP_004248763.1 KEGG: sta:STHERM_c14210 hypothetical protein YP_004248764.1 KEGG: ssm:Spirs_3729 hypothetical protein YP_004248765.1 KEGG: clj:CLJU_c17460 membrane-associated response regulator; PFAM: transcription regulator LuxR, C-terminal; SMART: transcription regulator LuxR, C-terminal YP_004248766.1 PFAM: ferric-uptake regulator; KEGG: tme:Tmel_0432 ferric uptake regulator family protein YP_004248767.1 PFAM: ABC-3; KEGG: dak:DaAHT2_0683 ABC transporter YP_004248768.1 PFAM: ABC transporter-like; KEGG: ssm:Spirs_0195 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004248769.1 PFAM: ABC transporter metal-binding lipoprotein; KEGG: sdl:Sdel_0131 periplasmic solute binding protein YP_004248770.1 KEGG: pmo:Pmob_0648 ferripyochelin binding protein (fbp) YP_004248771.1 PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: cpy:Cphy_1928 TrkA domain-containing protein YP_004248772.1 KEGG: cpy:Cphy_1927 H(+)-transporting two-sector ATPase; PFAM: Cation transporter YP_004248773.1 PFAM: Ferritin/Dps protein; KEGG: dhd:Dhaf_2260 ferritin Dps family protein YP_004248774.1 PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: emi:Emin_0339 pirin domain-containing protein YP_004248775.1 KEGG: sus:acid_1594 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004248776.1 KEGG: sus:acid_1595 SPFH domain-containing protein/band 7 family protein; PFAM: Band 7 protein; SMART: Band 7 protein YP_004248777.1 PFAM: ABC transporter-like; KEGG: sta:STHERM_c02090 ATP-binding/permease MacB; SMART: ATPase, AAA+ type, core YP_004248778.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: sta:STHERM_c02080 permease, involved in lipoprotein release YP_004248779.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: sta:STHERM_c02070 permease involved in lipoprotein release YP_004248780.1 KEGG: sta:STHERM_c02060 outer membrane protein involved in lipoprotein sorting YP_004248781.1 KEGG: sta:STHERM_c02050 hypothetical protein YP_004248782.1 PFAM: 4Fe-4S binding domain; KEGG: cbe:Cbei_0795 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004248783.1 KEGG: cpy:Cphy_3149 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain YP_004248785.1 PFAM: Zinc/iron permease; KEGG: cce:Ccel_1427 zinc/iron permease YP_004248786.1 KEGG: ssm:Spirs_2283 ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN-related YP_004248787.1 PFAM: alpha/beta hydrolase fold-1; KEGG: elm:ELI_3499 alpha/beta hydrolase fold protein YP_004248788.1 KEGG: set:SEN2329 phosphodiesterase; TIGRFAM: phosphodiesterase MJ0936; PFAM: metallo-dependent phosphatase YP_004248789.1 PFAM: aldehyde ferredoxin oxidoreductase, N-terminal; aldehyde ferredoxin oxidoreductase, C-terminal; KEGG: ddf:DEFDS_0764 aldehyde ferredoxin oxidoreductase; SMART: aldehyde ferredoxin oxidoreductase, N-terminal YP_004248790.1 SMART: ATPase, AAA+ type, core; KEGG: ssm:Spirs_3160 AAA ATPase YP_004248791.1 KEGG: oih:OB0366 hypothetical protein YP_004248792.1 PFAM: NIF system FeS cluster assembly, NifU, N-terminal; BFD-like [2Fe-2S]-binding domain; KEGG: ssm:Spirs_3169 nitrogen-fixing NifU domain protein YP_004248793.1 KEGG: ssm:Spirs_3170 cysteine desulfurase; PFAM: Aminotransferase, class V/cysteine desulfurase YP_004248794.1 PFAM: Uncharacterised protein family UPF0153; KEGG: ssm:Spirs_3171 protein of unknown function UPF0153 YP_004248795.1 TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; HAMAP: Survival protein SurE-like phosphatase/nucleotidase; KEGG: ssm:Spirs_3174 stationary-phase survival protein SurE; PFAM: Survival protein SurE-like phosphatase/nucleotidase YP_004248796.1 KEGG: ssm:Spirs_3175 galactokinase; PFAM: GHMP kinase, C-terminal YP_004248797.1 TIGRFAM: ribosomal protein L31; HAMAP: ribosomal protein L31; KEGG: ssm:Spirs_3178 ribosomal protein L31; PFAM: ribosomal protein L31 YP_004248798.1 TIGRFAM: transcription termination factor Rho; PFAM: ATPase, alpha/subunit beta, nucleotide-binding domain; Rho termination factor, RNA-binding; KEGG: ssm:Spirs_3179 transcription termination factor Rho; SMART: Cold shock protein; ATPase, AAA+ type, core YP_004248799.1 TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal; Molybdopterin binding; KEGG: ssm:Spirs_3180 competence/damage-inducible protein CinA; SMART: Molybdopterin binding YP_004248800.1 TIGRFAM: Apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase; KEGG: ssm:Spirs_3184 apolipoprotein N-acyltransferase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004248801.1 KEGG: ssm:Spirs_3185 histone family protein DNA-binding protein; PFAM: histone-like bacterial DNA-binding protein; SMART: histone-like bacterial DNA-binding protein YP_004248802.1 TIGRFAM: ribosomal protein S20; HAMAP: ribosomal protein S20; KEGG: sfu:Sfum_2087 30S ribosomal protein S20; PFAM: ribosomal protein S20 YP_004248803.1 PFAM: PSP1, C-terminal; KEGG: ssm:Spirs_3187 PSP1 domain protein YP_004248804.1 KEGG: ssm:Spirs_3191 hydrolase, TatD family; TIGRFAM: deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: deoxyribonuclease, TatD-related YP_004248805.1 KEGG: tde:TDE2731 NifR3 family TIM-barrel protein; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: tRNA-dihydrouridine synthase YP_004248806.1 TIGRFAM: phosphoribosylglycinamide synthetase; KEGG: ssm:Spirs_3193 phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase, N-domain; phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, C-domain YP_004248807.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: cdl:CDR20291_0742 signaling protein; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted YP_004248808.1 KEGG: tde:TDE1234 hypothetical protein YP_004248809.1 KEGG: ssm:Spirs_0502 hypothetical protein YP_004248810.1 PFAM: ABC transporter permease; KEGG: tai:Taci_0123 inner-membrane translocator YP_004248811.1 PFAM: ABC transporter permease; KEGG: ssm:Spirs_0504 inner-membrane translocator YP_004248812.1 PFAM: ABC transporter-like; KEGG: tai:Taci_0121 ABC transporter related protein; SMART: ATPase, AAA+ type, core YP_004248813.1 KEGG: ssm:Spirs_0506 hypothetical protein YP_004248814.1 KEGG: ssm:Spirs_3194 RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU YP_004248815.1 SMART: heat shock protein DnaJ, N-terminal; TIGRFAM: Chaperone DnaJ; KEGG: ssm:Spirs_3197 chaperone protein DnaJ; HAMAP: Chaperone DnaJ; PFAM: Chaperone DnaJ, C-terminal; heat shock protein DnaJ, N-terminal; heat shock protein DnaJ, cysteine-rich domain YP_004248816.1 TIGRFAM: Chaperone DnaK; HAMAP: Chaperone DnaK; KEGG: ssm:Spirs_3198 chaperone protein DnaK; PFAM: heat shock protein 70 YP_004248817.1 KEGG: sta:STHERM_c18700 protein GrpE; HAMAP: GrpE nucleotide exchange factor; PFAM: GrpE nucleotide exchange factor YP_004248818.1 KEGG: cim:CIMG_02004 hypothetical protein YP_004248819.1 KEGG: ssm:Spirs_3201 haloacid dehalogenase domain protein hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004248820.1 TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; HAMAP: GTP-binding, EngA; KEGG: ssm:Spirs_3209 ribosome-associated GTPase EngA; PFAM: GTP-binding protein, HSR1-related YP_004248821.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; KEGG: ssm:Spirs_3210 phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme; phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile domain YP_004248822.1 PFAM: GerMN domain; SMART: GerMN domain YP_004248823.1 KEGG: sta:STHERM_c13010 hemolysin; TIGRFAM: Haemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ YP_004248824.1 TIGRFAM: Conserved hypothetical protein CHP00282; KEGG: ssm:Spirs_3213 Ser/Thr protein phosphatase family protein YP_004248825.1 SMART: metal-dependent phosphohydrolase, HD domain; K Homology; TIGRFAM: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Uncharacterised protein family HDIG; KEGG: ssm:Spirs_3214 metal dependent phosphohydrolase; HAMAP: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; PFAM: metal-dependent phosphohydrolase, HD subdomain; K Homology, type 1, subgroup YP_004248826.1 TIGRFAM: ribosomal protein L17; HAMAP: ribosomal protein L17; KEGG: ssm:Spirs_0981 ribosomal protein L17; PFAM: ribosomal protein L17 YP_004248827.1 SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; TIGRFAM: DNA-directed RNA polymerase, subunit alpha; KEGG: ssm:Spirs_0980 DNA-directed RNA polymerase, subunit alpha; HAMAP: DNA-directed RNA polymerase, subunit alpha; PFAM: RNA polymerase, subunit alpha, C-terminal; DNA-directed RNA polymerase, dimerisation; DNA-directed RNA polymerase, insert domain YP_004248828.1 TIGRFAM: ribosomal protein S4, bacterial-type; PFAM: RNA-binding S4; ribosomal protein S4/S9, N-terminal; KEGG: ssm:Spirs_0979 ribosomal protein S4; SMART: RNA-binding S4 YP_004248829.1 KEGG: ssm:Spirs_0978 30S ribosomal protein S11; TIGRFAM: ribosomal protein S11, bacterial-type; PFAM: ribosomal protein S11 YP_004248830.1 KEGG: ssm:Spirs_0977 30S ribosomal protein S13; TIGRFAM: ribosomal protein S13, bacterial-type; PFAM: ribosomal protein S13 YP_004248831.1 TIGRFAM: ribosomal protein L36; HAMAP: ribosomal protein L36; KEGG: ssm:Spirs_0976 ribosomal protein L36; PFAM: ribosomal protein L36 YP_004248832.1 KEGG: ssm:Spirs_0975 preprotein translocase, SecY subunit; TIGRFAM: SecY protein; PFAM: SecY protein YP_004248833.1 TIGRFAM: ribosomal protein L15, bacterial-type; KEGG: ssm:Spirs_0974 ribosomal protein L15 YP_004248834.1 KEGG: llm:llmg_2363 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30, bacterial-type; PFAM: ribosomal protein L30, ferredoxin-like fold domain YP_004248835.1 KEGG: ssm:Spirs_0972 ribosomal protein S5; TIGRFAM: ribosomal protein S5, bacterial-type; PFAM: ribosomal protein S5, N-terminal; ribosomal protein S5, C-terminal YP_004248836.1 KEGG: ssm:Spirs_0971 ribosomal protein L18; TIGRFAM: ribosomal protein L18, bacterial; PFAM: ribosomal protein L18/L5 YP_004248837.1 KEGG: ssm:Spirs_0970 ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial-type; PFAM: ribosomal protein L6, alpha-beta domain YP_004248838.1 PFAM: ribosomal protein S8; KEGG: ssm:Spirs_0969 ribosomal protein S8 YP_004248839.1 PFAM: ribosomal protein S14; KEGG: ssm:Spirs_0968 ribosomal protein S14 YP_004248840.1 PFAM: ribosomal protein L5; KEGG: ssm:Spirs_0967 ribosomal protein L5 YP_004248841.1 TIGRFAM: ribosomal protein L24; PFAM: KOW; KEGG: sta:STHERM_c05070 50S ribosomal protein L24; SMART: KOW YP_004248842.1 KEGG: ssm:Spirs_0965 ribosomal protein L14; TIGRFAM: ribosomal protein L14, bacterial-type; PFAM: ribosomal protein L14b/L23e YP_004248843.1 KEGG: ssm:Spirs_0964 30S ribosomal protein S17; TIGRFAM: ribosomal protein S17, bacterial-type; PFAM: ribosomal protein S17 YP_004248844.1 KEGG: btu:BT0486 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29 YP_004248845.1 TIGRFAM: ribosomal protein L16; HAMAP: ribosomal protein L16; KEGG: ssm:Spirs_0962 ribosomal protein L16; PFAM: ribosomal protein L10e/L16 YP_004248846.1 TIGRFAM: ribosomal protein S3, bacterial; PFAM: ribosomal protein S3, C-terminal; ribosomal protein S3, N-terminal; K Homology, type 2; KEGG: ssm:Spirs_0961 ribosomal protein S3; SMART: K Homology YP_004248847.1 KEGG: ssm:Spirs_0960 ribosomal protein L22; TIGRFAM: ribosomal protein L22, bacterial-type; PFAM: ribosomal protein L22/L17 YP_004248848.1 KEGG: ssm:Spirs_0959 ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial-type; PFAM: ribosomal protein S19/S15 YP_004248849.1 KEGG: sta:STHERM_c04990 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2, bacterial-type; PFAM: ribosomal protein L2, C-terminal; ribosomal proteins L2, RNA binding domain YP_004248850.1 PFAM: ribosomal protein L25/L23; KEGG: ssm:Spirs_0957 ribosomal protein L25/L23 YP_004248851.1 PFAM: ribosomal protein L4/L1e; KEGG: ssm:Spirs_0956 ribosomal protein L4/L1e YP_004248852.1 KEGG: ssm:Spirs_0955 50S ribosomal protein L3; TIGRFAM: ribosomal protein L3, bacterial/organelle-type; PFAM: ribosomal protein L3 YP_004248853.1 TIGRFAM: ribosomal protein S10 subgroup; HAMAP: ribosomal protein S10 subgroup; KEGG: ssm:Spirs_0954 ribosomal protein S10; PFAM: ribosomal protein S10 YP_004248854.1 KEGG: ssm:Spirs_0953 translation elongation factor Tu; TIGRFAM: translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; translation elongation factor EFTu/EF1A, domain 2; translation elongation factor EFTu/EF1A, C-terminal YP_004248855.1 KEGG: ssm:Spirs_0952 ribosomal protein S7; TIGRFAM: ribosomal protein S7, bacterial-type; PFAM: ribosomal protein S7 YP_004248856.1 KEGG: ssm:Spirs_0951 ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacteria; PFAM: ribosomal protein S12/S23 YP_004248858.1 SMART: RNA polymerase, N-terminal; TIGRFAM: DNA-directed RNA polymerase subunit beta-prime; KEGG: ssm:Spirs_0950 DNA-directed RNA polymerase, beta' subunit; HAMAP: DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5 YP_004248859.1 TIGRFAM: DNA-directed RNA polymerase subunit beta, bacterial-type; HAMAP: DNA-directed RNA polymerase subunit beta, bacterial-type; KEGG: ssm:Spirs_0949 DNA-directed RNA polymerase, beta subunit; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase subunit beta, protrusion; RNA polymerase Rpb2, domain 2; DNA-directed RNA polymerase subunit beta, external 1 domain; RNA polymerase Rpb2, domain 7 YP_004248860.1 TIGRFAM: ribosomal protein L7/L12; HAMAP: ribosomal protein L7/L12; KEGG: ssm:Spirs_0948 ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12, C-terminal YP_004248861.1 KEGG: ssm:Spirs_0947 ribosomal protein L10; HAMAP: ribosomal protein L10; PFAM: ribosomal protein L10/acidic P0 YP_004248862.1 KEGG: ssm:Spirs_0946 ribosomal protein L1; TIGRFAM: ribosomal protein L1, bacterial-type; PFAM: ribosomal protein L1 YP_004248863.1 TIGRFAM: ribosomal protein L11, bacterial-type; PFAM: ribosomal protein L11, C-terminal domain; ribosomal protein L11, N-terminal domain; KEGG: tde:TDE2425 50S ribosomal protein L11; SMART: ribosomal protein L11 YP_004248864.1 TIGRFAM: transcription antitermination protein, NusG; PFAM: transcription antitermination protein, NusG, N-terminal; KOW; KEGG: ssm:Spirs_0944 NusG antitermination factor; SMART: transcription antitermination protein, NusG, N-terminal; KOW YP_004248865.1 KEGG: ssm:Spirs_0943 preprotein translocase, SecE subunit; TIGRFAM: SecE subunit of protein translocation complex; PFAM: protein SecE/Sec61-gamma protein YP_004248866.1 TIGRFAM: ribosomal protein L33; HAMAP: ribosomal protein L33; KEGG: ssm:Spirs_0942 ribosomal protein L33; PFAM: ribosomal protein L33 YP_004248867.1 KEGG: ssm:Spirs_0940 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35 YP_004248868.1 SMART: Helix-turn-helix type 3 YP_004248869.1 PFAM: protein of unknown function DUF554; KEGG: ssm:Spirs_0939 protein of unknown function DUF554 YP_004248870.1 KEGG: ssm:Spirs_0931 molybdenum cofactor cytidylyltransferase YP_004248871.1 TIGRFAM: chaperonin ClpB; PFAM: ATPase, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: ssm:Spirs_0929 ATP-dependent chaperone ClpB; SMART: ATPase, AAA+ type, core YP_004248872.1 PFAM: transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cts:Ctha_0156 TetR family transcriptional regulator YP_004248873.1 KEGG: mxa:MXAN_2289 hypothetical protein; PFAM: peptidase M20; peptidase M20, dimerisation YP_004248874.1 PFAM: heat shock protein Hsp20; KEGG: tme:Tmel_1127 heat shock protein HSP20 YP_004248876.1 PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; TIGRFAM: ornithine carbamoyltransferase; HAMAP: ornithine carbamoyltransferase; KEGG: pmo:Pmob_0068 ornithine carbamoyltransferase YP_004248877.1 KEGG: shi:Shel_27120 hypothetical protein YP_004248878.1 PFAM: NLPA lipoprotein; KEGG: fsu:Fisuc_1037 NlpA lipoprotein YP_004248879.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: fsu:Fisuc_1035 binding-protein-dependent transport systems inner membrane component YP_004248880.1 PFAM: ABC transporter-like; NIL domain; KEGG: fnu:FN0660 DL-methionine transporter ATP-binding subunit; SMART: ATPase, AAA+ type, core; NIL domain YP_004248881.1 PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; KEGG: tpe:Tpen_1195 LmbE family protein YP_004248882.1 TIGRFAM: Sodium:galactoside symporter; KEGG: tde:TDE1454 sugar transporter YP_004248883.1 PFAM: Major facilitator superfamily MFS-1; KEGG: gob:Gobs_0263 major facilitator superfamily protein YP_004248884.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; HAMAP: deoxyribose-phosphate aldolase, type 1; KEGG: tba:TERMP_01541 deoxyribose-phosphate aldolase YP_004248885.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; KEGG: ssm:Spirs_3224 HAD-superfamily hydrolase, subfamily IIB YP_004248886.1 KEGG: ssm:Spirs_3225 CDP-diacylglycerol/glycerol-3-phosphate3-phospha tidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004248887.1 KEGG: sta:STHERM_c16020 thermostable carboxypeptidase 1; PFAM: peptidase M32, carboxypeptidase Taq metallopeptidase YP_004248888.1 TIGRFAM: threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; threonyl/alanyl tRNA synthetase, SAD; anticodon-binding; KEGG: ssm:Spirs_3229 threonyl-tRNA synthetase; SMART: threonyl/alanyl tRNA synthetase, SAD YP_004248889.1 PFAM: GAF; KEGG: ccb:Clocel_0419 GAF sensor protein YP_004248890.1 PFAM: Iron hydrogenase, large subunit, C-terminal; 4Fe-4S binding domain; KEGG: dps:DP2379 hydrogenase YP_004248891.1 KEGG: sta:STHERM_c12340 hypothetical protein YP_004248892.1 KEGG: ssm:Spirs_1302 protein serine/threonine phosphatase; PFAM: sporulation stage II, protein E C-terminal; SMART: protein phosphatase 2C-like YP_004248893.1 PFAM: Fe-S cluster; 4Fe-4S binding domain; PAS fold; KEGG: ssm:Spirs_1301 hydrogenase large subunit domain protein YP_004248894.1 KEGG: ssm:Spirs_1300 hypothetical protein YP_004248895.1 HAMAP: transcriptional repressor, redox-sensing, Rex; PFAM: CoA-binding; Rex DNA-binding, C-terminal; KEGG: ssm:Spirs_1689 CoA-binding protein; SMART: CoA-binding YP_004248896.1 TIGRFAM: LytB protein; KEGG: ssm:Spirs_3235 hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein YP_004248897.1 KEGG: ssm:Spirs_3236 protein-export membrane protein SecF; TIGRFAM: SecF protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: Preprotein translocase, SecD/SecF/SecDF YP_004248898.1 KEGG: ssm:Spirs_3237 protein-export membrane protein SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal YP_004248899.1 KEGG: ssm:Spirs_3238 preprotein translocase, YajC subunit; TIGRFAM: Preprotein translocase YajC; PFAM: Preprotein translocase YajC YP_004248900.1 TIGRFAM: chaperonin Cpn60; HAMAP: chaperonin Cpn60; KEGG: ssm:Spirs_3240 chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1 YP_004248901.1 PFAM: protein of unknown function DUF92, TMEM19; KEGG: elm:ELI_1116 hypothetical membrane protein YP_004248902.1 KEGG: elm:ELI_1117 integral membrane protein YP_004248903.1 KEGG: ssm:Spirs_2330 RNP-1 like RNA-binding protein; PFAM: RNA recognition motif domain; SMART: RNA recognition motif domain YP_004248904.1 PFAM: protein of unknown function DUF1653; KEGG: lpp:plpp0071 hypothetical protein YP_004248905.1 PFAM: protein of unknown function DUF2207, membrane; KEGG: ipo:Ilyop_0755 protein of unknown function DUF2207, membrane YP_004248906.1 PFAM: LemA; KEGG: elm:ELI_0701 hypothetical protein YP_004248907.1 KEGG: ssm:Spirs_3243 arginine repressor, ArgR; HAMAP: arginine repressor; PFAM: arginine repressor, C-terminal; arginine repressor, DNA-binding domain YP_004248908.1 KEGG: ssm:Spirs_3245 phosphoglucose isomerase (PGI); HAMAP: phosphoglucose isomerase (PGI); PFAM: phosphoglucose isomerase (PGI) YP_004248909.1 KEGG: csh:Closa_1145 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004248910.1 PFAM: ABC transporter-like; ABC transporter transmembrane domain; KEGG: mla:Mlab_1258 hypothetical protein; SMART: ATPase, AAA+ type, core YP_004248911.1 PFAM: ABC transporter-like; ABC transporter transmembrane domain; KEGG: clj:CLJU_c15180 ABC transporter ATPase/permease; SMART: ATPase, AAA+ type, core YP_004248912.1 PFAM: Drug/metabolite transporter; KEGG: clj:CLJU_c24680 hypothetical protein YP_004248913.1 PFAM: Haloacid dehalogenase-like hydrolase; KEGG: nth:Nther_0542 haloacid dehalogenase domain protein hydrolase YP_004248914.1 KEGG: ssm:Spirs_3247 phosphofructokinase; PFAM: phosphofructokinase domain YP_004248915.1 PFAM: HTH transcriptional regulator, LysR; KEGG: ssm:Spirs_1024 ModE family transcriptional regulator YP_004248916.1 PFAM: Aminotransferase, class I/classII; KEGG: ssm:Spirs_1023 aminotransferase class I and II YP_004248917.1 SMART: NAD-dependent DNA ligase, N-terminal; BRCT; TIGRFAM: NAD-dependent DNA ligase; KEGG: ssm:Spirs_1336 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; Zinc-finger, NAD-dependent DNA ligase C4-type; BRCT YP_004248918.1 PFAM: aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; KEGG: ssm:Spirs_1330 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein YP_004248919.1 PFAM: ferredoxin; KEGG: tde:TDE0727 iron-sulfur cluster-binding protein YP_004248920.1 PFAM: Molybdopterin dehydrogenase, FAD-binding; KEGG: ssm:Spirs_1328 molybdopterin dehydrogenase FAD-binding protein YP_004248921.1 SMART: polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III subunit alpha; KEGG: ssm:Spirs_1327 DNA polymerase III subunit alpha; PFAM: Bacterial DNA polymerase III alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type YP_004248922.1 PFAM: Uncharacterised protein family Ycf19; KEGG: sta:STHERM_c08080 hypothetical protein YP_004248923.1 TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: ssm:Spirs_1325 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004248924.1 KEGG: ssm:Spirs_1324 methyltransferase; TIGRFAM: RNA methyltransferase, RsmD; PFAM: RNA methyltransferase, RsmD YP_004248925.1 PFAM: acyl-ACP thioesterase; KEGG: ssm:Spirs_4020 acyl-ACP thioesterase YP_004248926.1 KEGG: lil:LA_3056 hypothetical protein YP_004248927.1 KEGG: ssm:Spirs_0324 leader peptide processing enzyme YP_004248928.1 TIGRFAM: peptidase A8, signal peptidase II; HAMAP: peptidase A8, signal peptidase II; KEGG: ssm:Spirs_0323 lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II YP_004248929.1 KEGG: sta:STHERM_c21440 hypothetical protein; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NGG1p interacting factor 3, NIF3 YP_004248930.1 KEGG: ssm:Spirs_0321 peptidase S16 YP_004248931.1 KEGG: toc:Toce_1077 MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein YP_004248932.1 PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: ssm:Spirs_0318 tRNA/rRNA methyltransferase (SpoU) YP_004248933.1 TIGRFAM: Uncharacterised protein family UPF0011; HAMAP: ribosomal RNA small subunit methyltransferase I; KEGG: ssm:Spirs_0315 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; PFAM: Tetrapyrrole methylase YP_004248934.1 PFAM: PspA/IM30; KEGG: cps:CPS_3772 phage shock protein A YP_004248936.1 KEGG: dbr:Deba_2764 sigma54 specific transcriptional regulator, Fis family; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core YP_004248937.1 PFAM: PspA/IM30; KEGG: dvm:DvMF_1799 phage shock protein A, PspA YP_004248939.1 PFAM: Phage shock domain; KEGG: dbr:Deba_2761 phage shock protein C, PspC YP_004248940.1 KEGG: bld:BLi03495 YvqG YP_004248941.1 PFAM: protein of unknown function DUF1576; KEGG: nth:Nther_0317 protein of unknown function DUF1576 YP_004248943.1 SMART: methylglyoxal synthase-like domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit; KEGG: sta:STHERM_c07390 carbamoyl-phosphate synthase large chain; PFAM: carbamoyl-phosphate synthetase, large subunit, ATP-binding; carbamoyl-phosphate synthase, large subunit, N-terminal; carbamoyl-phosphate synthetase, large subunit, oligomerisation; methylglyoxal synthase-like domain YP_004248944.1 TIGRFAM: aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; KEGG: ssm:Spirs_0312 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain YP_004248945.1 KEGG: csh:Closa_2208 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004248946.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dhd:Dhaf_0017 diguanylate cyclase; SMART: Diguanylate cyclase, predicted YP_004248947.1 PFAM: peroxiredoxin, OsmC-like protein YP_004248949.1 KEGG: cth:Cthe_2069 hypothetical protein YP_004248950.1 PFAM: class II aldolase/adducin, N-terminal; KEGG: ssm:Spirs_2391 class II aldolase/adducin family protein YP_004248951.1 KEGG: cpy:Cphy_0595 LacI family transcription regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004248952.1 KEGG: cpy:Cphy_0596 hypothetical protein YP_004248953.1 KEGG: cpy:Cphy_0597 hypothetical protein YP_004248954.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: cpy:Cphy_0598 hypothetical protein YP_004248955.1 PFAM: oxidoreductase, N-terminal; KEGG: bja:bll6448 hypothetical protein YP_004248956.1 PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; KEGG: cpy:Cphy_0600 oxidoreductase domain-containing protein YP_004248957.1 TIGRFAM: prolyl-tRNA synthetase, class IIa, bacterial; HAMAP: prolyl-tRNA synthetase, class IIa, bacterial; KEGG: stp:Strop_1793 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; YbaK/aminoacyl-tRNA synthetase-associated domain; anticodon-binding YP_004248958.1 KEGG: aar:Acear_1168 ankyrin; PFAM: ankyrin repeat; SMART: ankyrin repeat YP_004248959.1 KEGG: clj:CLJU_c26030 hypothetical protein; PFAM: Bacterial Ig-like, group 2; SMART: Bacterial Ig-like, group 2 YP_004248960.1 PFAM: ankyrin repeat; KEGG: aar:Acear_1168 ankyrin YP_004248961.1 PFAM: adenosine/AMP deaminase; TIGRFAM: adenosine deaminase; HAMAP: adenosine deaminase; KEGG: ssm:Spirs_0300 adenosine deaminase YP_004248962.1 PFAM: peptidase S54, rhomboid domain; KEGG: ssm:Spirs_0298 rhomboid family protein YP_004248963.1 KEGG: ssm:Spirs_0297 ribosomal RNA methyltransferase RrmJ/FtsJ; HAMAP: ribosomal RNA large subunit methyltransferase E; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ YP_004248964.1 KEGG: csh:Closa_1010 hypothetical protein YP_004248965.1 KEGG: ssm:Spirs_0729 ABC transporter protein; PFAM: ABC transporter-like; protein of unknown function DUF1893; SMART: ATPase, AAA+ type, core YP_004248966.1 PFAM: ABC-3; KEGG: ssm:Spirs_0728 ABC transporter YP_004248967.1 KEGG: ssm:Spirs_0727 periplasmic solute binding protein YP_004248968.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: rba:RB201 sugar phosphate isomerase/epimerase YP_004248969.1 PFAM: 3-dehydroquinate synthase AroB; KEGG: ipo:Ilyop_0504 iron-containing alcohol dehydrogenase YP_004248970.1 PFAM: transketolase-like, pyrimidine-binding domain; transketolase, C-terminal; KEGG: ttm:Tthe_1907 transketolase central region; SMART: transketolase-like, pyrimidine-binding domain YP_004248971.1 KEGG: cth:Cthe_2704 transketolase subunit A; PFAM: transketolase, N-terminal YP_004248973.1 KEGG: toc:Toce_0044 transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004248974.1 PFAM: Domain of unknown function DUF362; KEGG: csc:Csac_1323 hypothetical protein YP_004248975.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: ssm:Spirs_2578 aldo/keto reductase YP_004248976.1 KEGG: dhd:Dhaf_0900 xylose isomerase domain protein TIM barrel YP_004248977.1 KEGG: sfu:Sfum_3581 Asp/Glu racemase YP_004248978.1 KEGG: ssm:Spirs_1258 hypothetical protein YP_004248979.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: ssm:Spirs_1256 protein of unknown function DUF112 transmembrane YP_004248980.1 KEGG: rpe:RPE_1956 hypothetical protein YP_004248981.1 HAMAP: pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: dhd:Dhaf_1967 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: pyridoxal phosphate (active vitamin B6) biosynthesis PdxA YP_004248982.1 KEGG: dhd:Dhaf_1966 sigma54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, propionate catabolism activator, N-terminal; SMART: ATPase, AAA+ type, core YP_004248984.1 PFAM: Mechanosensitive ion channel MscS; KEGG: vcj:VCD_002632 small-conductance mechanosensitive channel YP_004248985.1 HAMAP: Chaperone protein HtpG; PFAM: heat shock protein Hsp90, C-terminal; ATPase-like, ATP-binding domain; KEGG: ssm:Spirs_0285 heat shock protein HSP90; SMART: ATPase-like, ATP-binding domain YP_004248986.1 PFAM: ROK; HTH transcriptional regulator, MarR; KEGG: NagC family transcriptional regulator YP_004248989.1 KEGG: ssm:Spirs_1347 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004248990.1 KEGG: ssm:Spirs_1347 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004248991.1 KEGG: mac:MA3676 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004248992.1 KEGG: cdf:CD1458 flavoprotein YP_004248993.1 KEGG: sta:STHERM_c06580 transcriptional regulator YP_004248994.1 PFAM: metallo-dependent phosphatase; KEGG: sta:STHERM_c06590 Ser/Thr protein phosphatase family protein YP_004248995.1 KEGG: ssm:Spirs_3584 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR YP_004248996.1 PFAM: protein of unknown function DUF985; KEGG: sco:SCO4051 hypothetical protein YP_004248997.1 TIGRFAM: inosine guanosine/xanthosine phosphorylase; Purine nucleoside phosphorylase I, inosine/guanosine-specific; KEGG: ssm:Spirs_4139 purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: nucleoside phosphorylase domain YP_004248998.1 PFAM: ABC transporter permease; KEGG: tde:TDE1947 ABC transporter permease YP_004248999.1 PFAM: ABC transporter permease; KEGG: tde:TDE1948 ABC transporter permease YP_004249000.1 PFAM: ABC transporter-like; KEGG: tde:TDE1949 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004249001.1 PFAM: Basic membrane lipoprotein; KEGG: gym:GYMC10_0328 basic membrane lipoprotein YP_004249002.1 PFAM: glycosyl hydrolase, family 88; KEGG: sli:Slin_1024 glycosyl hydrolase family 88 YP_004249003.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: mrb:Mrub_0279 extracellular solute-binding protein family 1 YP_004249004.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: mrb:Mrub_0280 binding-protein-dependent transport systems inner membrane component YP_004249005.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: mrb:Mrub_0281 binding-protein-dependent transport systems inner membrane component YP_004249007.1 KEGG: ssa:SSA_2012 hypothetical protein YP_004249008.1 PFAM: transcription regulator PadR N-terminal-like; KEGG: sgo:SGO_0396 PadR family transcriptional regulator YP_004249009.1 KEGG: ssm:Spirs_1217 ATP-binding region ATPase domain protein; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004249010.1 KEGG: cbe:Cbei_1833 altronate oxidoreductase; PFAM: mannitol dehydrogenase, C-terminal; sodium symporter; mannitol dehydrogenase, N-terminal YP_004249011.1 PFAM: D-galactarate dehydratase/altronate hydrolase, C-terminal; SAF domain; KEGG: ttm:Tthe_2395 altronate dehydratase; SMART: SAF domain YP_004249012.1 HAMAP: uronate isomerase; KEGG: cow:Calow_1181 glucuronate isomerase; PFAM: uronate isomerase YP_004249013.1 KEGG: tau:Tola_3045 IclR family transcriptional regulator; PFAM: transcription regulator IclR, C-terminal; transcription regulator IclR, N-terminal; SMART: transcription regulator IclR, N-terminal YP_004249014.1 PFAM: oxidoreductase, N-terminal; oxidoreductase, C-terminal; KEGG: oih:OB3261 oxidoreductase YP_004249015.1 PFAM: Cupin 2, conserved barrel; KEGG: ddf:DEFDS_1416 hypothetical protein YP_004249016.1 PFAM: Auxin efflux carrier; KEGG: cdf:CD3169 transporter YP_004249017.1 KEGG: ngr:NAEGRDRAFT_81874 hypothetical protein YP_004249018.1 KEGG: ssm:Spirs_0330 phospholipid/glycerol acyltransferase YP_004249019.1 PFAM: Domain of unknown function DUF2202; KEGG: mae:Maeo_0891 hypothetical protein YP_004249020.1 PFAM: carbohydrate/purine kinase; KEGG: ssm:Spirs_3585 PfkB domain protein YP_004249021.1 TIGRFAM: KDPG/KHG aldolase; KEGG: aco:Amico_1665 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG/KHG aldolase YP_004249022.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: cac:CA_C3648 acetyltransferase YP_004249023.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: kol:Kole_1985 extracellular solute-binding protein family 1 YP_004249024.1 PFAM: Binding-protein-dependent transporters inner membrane component; KEGG: kol:Kole_1984 binding-protein-dependent transport systems inner membrane component YP_004249025.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Spermidine/putrescine ABC transporter ATP-binding subunit; KEGG: kol:Kole_1983 ABC transporter; PFAM: ABC transporter-like; transport-associated OB, type 2 YP_004249026.1 KEGG: sta:STHERM_c04310 hypothetical protein; PFAM: glycoside hydrolase, family 28 YP_004249027.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: sta:STHERM_c04340 xylose isomerase domain-containing protein TIM barrel YP_004249028.1 PFAM: thymidine kinase; KEGG: ssm:Spirs_0100 thymidine kinase YP_004249029.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; HAMAP: deoxyribose-phosphate aldolase, type 1; KEGG: gmc:GY4MC1_1066 deoxyribose-phosphate aldolase YP_004249030.1 PFAM: NUDIX hydrolase domain; KEGG: ssm:Spirs_0099 NUDIX hydrolase YP_004249031.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: cyn:Cyan7425_4632 aldo/keto reductase YP_004249032.1 PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; KEGG: ssm:Spirs_0272 protein of unknown function UPF0029 YP_004249033.1 KEGG: tva:TVAG_082020 hypothetical protein YP_004249034.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold; KEGG: gau:GAU_0838 signaling protein; SMART: Diguanylate cyclase, predicted; PAS YP_004249036.1 TIGRFAM: DNA polymerase III subunit gamma/ tau; PFAM: ATPase, AAA-type, core; KEGG: ssm:Spirs_0088 DNA polymerase III subunits gamma and tau; SMART: ATPase, AAA+ type, core YP_004249037.1 TIGRFAM: Uncharacterised protein family UPF0133; HAMAP: Uncharacterised protein family UPF0133; KEGG: ssm:Spirs_0087 hypothetical protein; PFAM: Uncharacterised protein family UPF0133 YP_004249038.1 SMART: Toprim domain; TIGRFAM: RecR protein; KEGG: ssm:Spirs_0086 recombination protein RecR; HAMAP: RecR protein; PFAM: Toprim domain; Zinc finger C4-type, RecR YP_004249039.1 manually curated; PFAM: heat shock protein DnaJ, N-terminal; KEGG: dat:HRM2_24840 DjlA; SMART: heat shock protein DnaJ, N-terminal YP_004249040.1 KEGG: ssm:Spirs_0085 hypothetical protein YP_004249041.1 TIGRFAM: diacylglycerol/lipid kinase; PFAM: diacylglycerol kinase, catalytic domain; KEGG: ssm:Spirs_3801 diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase, catalytic domain YP_004249042.1 KEGG: cth:Cthe_1094 hypothetical protein; PFAM: radical SAM N-terminal; SMART: Elongator protein 3/MiaB/NifB YP_004249043.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: ssm:Spirs_1362 N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase 1 YP_004249044.1 TIGRFAM: peptidase M20C, Xaa-His dipeptidase; KEGG: ssm:Spirs_0034 aminoacyl-histidine dipeptidase; PFAM: peptidase M20, dimerisation; peptidase M20 YP_004249045.1 PFAM: peptidase C26; KEGG: glutamine amidotransferase, class I YP_004249046.1 KEGG: ssm:Spirs_0020 uncharacterized flavoprotein; PFAM: beta-lactamase-like; SMART: beta-lactamase-like YP_004249047.1 PFAM: protein of unknown function DUF45; KEGG: hypothetical protein YP_004249049.1 PFAM: protein of unknown function DUF340, prokaryotic membrane; KEGG: ssm:Spirs_0011 protein of unknown function DUF340 membrane YP_004249050.1 KEGG: ssm:Spirs_4297 TraB family protein; TIGRFAM: Pheromone shutdown, TraB; PFAM: Pheromone shutdown-related, TraB YP_004249051.1 KEGG: ssm:Spirs_4298 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: ATPase, AAA+ type, core YP_004249052.1 KEGG: dps:DP1645 peptidyl-prolyl cis-trans isomerase; PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin-type; peptidyl-prolyl cis-trans isomerase, FKBP-type YP_004249053.1 TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: ssm:Spirs_4300 ParB-like partition protein; SMART: ParB-like nuclease YP_004249054.1 PFAM: cobyrinic acid a,c-diamide synthase; KEGG: ssm:Spirs_4301 cobyrinic acid ac-diamide synthase YP_004249055.1 PFAM: NIF system FeS cluster assembly, NifU, C-terminal; KEGG: ssm:Spirs_4302 nitrogen-fixing NifU domain protein YP_004249056.1 SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; TIGRFAM: DNA gyrase subunit A; KEGG: ssm:Spirs_4305 DNA gyrase subunit alpha; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YP_004249057.1 SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; TIGRFAM: DNA gyrase subunit B; KEGG: ssm:Spirs_4306 DNA gyrase subunit beta; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal