-- dump date 20111121_014945 -- class Genbank::CDS -- table cds_note -- id note YP_002735124.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_002735125.1 binds the polymerase to DNA and acts as a sliding clamp YP_002735126.1 identified by match to protein family HMM PF06107 YP_002735127.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_002735128.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_002735129.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_002735130.1 identified by match to protein family HMM PF01479 YP_002735131.1 identified by match to protein family HMM PF04977 YP_002735134.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_002735135.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_002735136.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_002735138.1 identified by match to protein family HMM PF01710 YP_002735139.1 identified by Glimmer3; putative YP_002735144.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_002735145.1 identified by match to protein family HMM PF00383 YP_002735146.1 identified by match to protein family HMM PF00589 YP_002735148.1 identified by match to protein family HMM PF04313 YP_002735149.1 identified by match to protein family HMM PF06114 YP_002735150.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385 YP_002735152.1 identified by match to protein family HMM PF01381 YP_002735153.1 identified by Glimmer3; putative YP_002735155.1 identified by Glimmer3; putative YP_002735156.1 identified by Glimmer3; putative YP_002735158.1 identified by match to protein family HMM PF01473 YP_002735159.1 identified by Glimmer3; putative YP_002735161.1 catalyzes the formation of dUMP from dUTP YP_002735162.1 identified by match to protein family HMM PF00300 YP_002735163.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002735164.1 identified by match to protein family HMM PF00484 YP_002735166.1 identified by Glimmer3; putative YP_002735167.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002735170.1 identified by Glimmer3; putative YP_002735172.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_002735173.1 identified by match to protein family HMM PF02629 YP_002735174.1 identified by match to protein family HMM PF03601 YP_002735175.1 catalyzes the transamination of the aromatic amino acid forming a ketoacid; first step in aromatic amino acid degradation in lactococci YP_002735176.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_002735177.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_002735180.1 identified by match to protein family HMM TIGR01847 YP_002735181.1 identified by Glimmer3; putative YP_002735183.1 identified by match to protein family HMM PF01381 YP_002735186.1 identified by Glimmer3; putative YP_002735187.1 identified by Glimmer3; putative YP_002735188.1 identified by Glimmer3; putative YP_002735189.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193 YP_002735190.1 identified by match to protein family HMM TIGR01000 YP_002735191.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_002735193.1 identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857 YP_002735194.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_002735195.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_002735196.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_002735197.1 identified by match to protein family HMM PF04892 YP_002735198.1 involved in de novo purine biosynthesis YP_002735199.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_002735200.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_002735201.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_002735202.1 identified by Glimmer3; putative YP_002735203.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_002735204.1 identified by match to protein family HMM PF00728; match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_002735205.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002735206.1 identified by match to protein family HMM PF01301; match to protein family HMM PF02449 YP_002735207.1 identified by match to protein family HMM PF03830 YP_002735208.1 identified by match to protein family HMM PF03609 YP_002735209.1 identified by match to protein family HMM PF03613 YP_002735210.1 identified by match to protein family HMM PF03610 YP_002735211.1 identified by match to protein family HMM PF01380 YP_002735212.1 identified by match to protein family HMM PF01263 YP_002735213.1 identified by match to protein family HMM PF00903 YP_002735214.1 identified by match to protein family HMM PF02583 YP_002735215.1 identified by match to protein family HMM PF00581 YP_002735217.1 identified by match to protein family HMM PF01048 YP_002735218.1 identified by Glimmer3; putative YP_002735219.1 identified by match to protein family HMM PF02386 YP_002735220.1 identified by match to protein family HMM PF02254 YP_002735221.1 identified by Glimmer3; putative YP_002735222.1 identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_002735223.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002735224.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002735225.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002735229.1 identified by match to protein family HMM PF00528 YP_002735230.1 identified by match to protein family HMM PF00528 YP_002735231.1 identified by match to protein family HMM PF01547 YP_002735232.1 identified by match to protein family HMM PF00581 YP_002735237.1 identified by match to protein family HMM PF03551 YP_002735238.1 identified by match to protein family HMM PF07690 YP_002735239.1 identified by match to protein family HMM PF00535 YP_002735240.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002735241.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002735242.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718 YP_002735243.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719 YP_002735244.1 identified by match to protein family HMM PF01476 YP_002735246.1 identified by match to protein family HMM TIGR01653 YP_002735247.1 identified by match to protein family HMM TIGR01654 YP_002735248.1 identified by match to protein family HMM PF00005 YP_002735249.1 identified by match to protein family HMM PF00497 YP_002735250.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_002735251.1 identified by match to protein family HMM PF01381 YP_002735252.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193 YP_002735259.1 identified by Glimmer3; putative YP_002735260.1 identified by Glimmer3; putative YP_002735261.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_002735262.1 identified by match to protein family HMM PF00293 YP_002735263.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_002735265.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_002735266.1 identified by match to protein family HMM PF07288 YP_002735267.1 identified by match to protein family HMM TIGR01847 YP_002735269.1 identified by match to protein family HMM PF00814 YP_002735270.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_002735271.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_002735273.1 identified by match to protein family HMM PF01610 YP_002735274.1 identified by match to protein family HMM PF00535 YP_002735275.1 identified by match to protein family HMM PF00005 YP_002735277.1 identified by match to protein family HMM PF02585 YP_002735278.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_002735279.1 identified by match to protein family HMM TIGR01716 YP_002735280.1 identified by Glimmer3; putative YP_002735281.1 identified by match to protein family HMM PF02517 YP_002735283.1 identified by match to protein family HMM PF03591 YP_002735284.1 identified by match to protein family HMM PF05437 YP_002735285.1 identified by match to protein family HMM PF00497 YP_002735286.1 identified by match to protein family HMM PF03180 YP_002735287.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687 YP_002735288.1 identified by match to protein family HMM PF00005 YP_002735289.1 identified by match to protein family HMM PF00528 YP_002735290.1 identified by match to protein family HMM TIGR02185 YP_002735291.1 identified by match to protein family HMM PF04854 YP_002735292.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580 YP_002735293.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165 YP_002735295.1 has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF YP_002735298.1 identified by match to protein family HMM PF04397 YP_002735299.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_002735300.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_002735301.1 identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506 YP_002735302.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_002735303.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_002735304.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_002735305.1 identified by match to protein family HMM PF03352 YP_002735306.1 identified by match to protein family HMM PF02517 YP_002735307.1 identified by match to protein family HMM PF02016 YP_002735308.1 identified by match to protein family HMM PF06570 YP_002735309.1 identified by match to protein family HMM PF01544 YP_002735310.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_002735311.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_002735312.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress YP_002735314.1 identified by match to protein family HMM PF06135 YP_002735315.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_002735316.1 identified by match to protein family HMM PF06949 YP_002735317.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499 YP_002735319.1 identified by match to protein family HMM PF00614 YP_002735321.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002735323.1 identified by match to protein family HMM PF00583 YP_002735324.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02491 YP_002735325.1 identified by match to protein family HMM PF00485 YP_002735326.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_002735327.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_002735328.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_002735329.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_002735330.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002735331.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_002735332.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_002735333.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_002735334.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002735335.1 one of the stabilizing components for the large ribosomal subunit YP_002735336.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_002735337.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_002735338.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_002735339.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002735340.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_002735341.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002735342.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_002735343.1 binds 5S rRNA along with protein L5 and L25 YP_002735344.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_002735345.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_002735346.1 late assembly protein YP_002735347.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002735348.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_002735349.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_002735350.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_002735351.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_002735352.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_002735353.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002735354.1 is a component of the macrolide binding site in the peptidyl transferase center YP_002735355.1 ACT domain-containing protein YP_002735356.1 identified by match to protein family HMM PF05167 YP_002735357.1 identified by match to protein family HMM PF00300 YP_002735358.1 identified by match to protein family HMM PF00165 YP_002735359.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_002735360.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002735361.1 identified by match to protein family HMM PF04198 YP_002735362.1 identified by match to protein family HMM PF02255 YP_002735363.1 identified by match to protein family HMM PF02302 YP_002735364.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002735365.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774 YP_002735366.1 similar to transaldolase from Escherichia coli; many organisms have multiple copies YP_002735367.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone YP_002735368.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_002735369.1 identified by match to protein family HMM PF00583 YP_002735370.1 identified by match to protein family HMM PF00583 YP_002735371.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_002735372.1 identified by match to protein family HMM PF06042 YP_002735373.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate YP_002735374.1 identified by match to protein family HMM PF01148 YP_002735375.1 identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_002735376.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002735377.1 identified by match to protein family HMM PF00232 YP_002735378.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_002735379.1 identified by match to protein family HMM PF00296 YP_002735380.1 identified by match to protein family HMM PF00128; match to protein family HMM PF00746; match to protein family HMM PF02922; match to protein family HMM PF03714; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168; match to protein family HMM TIGR02102 YP_002735381.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_002735382.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_002735383.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002735384.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity YP_002735385.1 identified by match to protein family HMM PF04221; match to protein family HMM TIGR02384 YP_002735386.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385 YP_002735388.1 identified by match to protein family HMM PF02073 YP_002735389.1 identified by match to protein family HMM PF04226 YP_002735390.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002735391.1 identified by match to protein family HMM PF03051 YP_002735392.1 identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828 YP_002735393.1 identified by match to protein family HMM PF03609 YP_002735394.1 identified by match to protein family HMM PF03610; match to protein family HMM PF03830 YP_002735395.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs YP_002735396.1 identified by Glimmer3; putative YP_002735397.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002735398.1 identified by match to protein family HMM PF00860 YP_002735399.1 identified by match to protein family HMM PF02517 YP_002735400.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_002735401.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499 YP_002735402.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_002735403.1 identified by match to protein family HMM PF01288; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; match to protein family HMM TIGR01498 YP_002735405.1 identified by match to protein family HMM PF00665 YP_002735406.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_002735407.1 forms a direct contact with the tRNA during translation YP_002735408.1 identified by match to protein family HMM PF00589 YP_002735410.1 identified by match to protein family HMM PF01055 YP_002735411.1 identified by match to protein family HMM PF00255 YP_002735412.1 identified by match to protein family HMM PF00746; match to protein family HMM PF02018; match to protein family HMM PF02278; match to protein family HMM PF02884; match to protein family HMM PF08124; match to protein family HMM TIGR01167 YP_002735414.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate YP_002735415.1 identified by match to protein family HMM PF00294 YP_002735416.1 identified by match to protein family HMM PF02502 YP_002735417.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate YP_002735418.1 identified by match to protein family HMM PF03610 YP_002735419.1 identified by match to protein family HMM PF07470 YP_002735420.1 identified by match to protein family HMM PF03830 YP_002735421.1 identified by match to protein family HMM PF03609 YP_002735422.1 identified by match to protein family HMM PF03613 YP_002735424.1 identified by match to protein family HMM PF07940 YP_002735425.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002735426.1 identified by Glimmer3; putative YP_002735427.1 identified by Glimmer3; putative YP_002735428.1 identified by match to protein family HMM PF01381 YP_002735429.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_002735430.1 identified by match to protein family HMM TIGR02209 YP_002735431.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793 YP_002735432.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_002735433.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_002735434.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_002735435.1 identified by match to protein family HMM PF08903 YP_002735436.1 identified by match to protein family HMM PF00128 YP_002735437.1 identified by match to protein family HMM PF02916; match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002735438.1 identified by match to protein family HMM PF02811 YP_002735439.1 identified by match to protein family HMM PF02706; match to protein family HMM TIGR01006 YP_002735440.1 identified by match to protein family HMM TIGR01007 YP_002735441.1 identified by match to protein family HMM PF02397 YP_002735442.1 identified by match to protein family HMM PF08660 YP_002735443.1 identified by match to protein family HMM PF04101 YP_002735445.1 identified by match to protein family HMM PF00535 YP_002735446.1 identified by match to protein family HMM PF00535 YP_002735447.1 identified by match to protein family HMM PF05704 YP_002735448.1 identified by match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002735449.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167 YP_002735450.1 identified by Glimmer3; putative YP_002735451.1 identified by match to protein family HMM PF01610 YP_002735453.1 identified by match to protein family HMM PF00496 YP_002735454.1 identified by match to protein family HMM PF00754; match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_002735455.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002735456.1 functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC YP_002735457.1 identified by match to protein family HMM PF06908 YP_002735458.1 identified by match to protein family HMM PF05103 YP_002735459.1 identified by match to protein family HMM PF01170 YP_002735461.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_002735462.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002735463.1 identified by match to protein family HMM PF01473 YP_002735464.1 identified by match to protein family HMM PF01473 YP_002735465.1 identified by match to protein family HMM PF07690 YP_002735466.1 identified by match to protein family HMM PF05147 YP_002735467.1 identified by match to protein family HMM PF01473 YP_002735468.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR00549 YP_002735469.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR01240 YP_002735470.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544; match to protein family HMM TIGR01220 YP_002735471.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate YP_002735473.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002735474.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281 YP_002735478.1 identified by match to protein family HMM PF00089; match to protein family HMM PF01473 YP_002735479.1 identified by match to protein family HMM PF01473 YP_002735480.1 identified by match to protein family HMM PF00665 YP_002735483.1 identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851 YP_002735484.1 identified by match to protein family HMM PF08279 YP_002735485.1 identified by match to protein family HMM PF00359 YP_002735486.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125 YP_002735487.1 identified by Glimmer3; putative YP_002735488.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_002735489.1 identified by match to protein family HMM TIGR01448 YP_002735490.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002735491.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_002735493.1 identified by match to protein family HMM PF02674 YP_002735494.1 identified by match to protein family HMM PF00488; match to protein family HMM PF01713; match to protein family HMM TIGR01069 YP_002735495.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002735496.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_002735497.1 identified by match to protein family HMM PF03595 YP_002735498.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002735499.1 identified by match to protein family HMM PF06115 YP_002735500.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive YP_002735501.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002735502.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03965 YP_002735503.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_002735504.1 carries the fatty acid chain in fatty acid biosynthesis YP_002735505.1 identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151 YP_002735506.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_002735507.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002735508.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_002735509.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002735510.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_002735511.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002735512.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_002735513.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; these proteins present a shorter N-terminus YP_002735515.1 identified by Glimmer3; putative YP_002735516.1 identified by Glimmer3; putative YP_002735517.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_002735518.1 identified by match to protein family HMM PF03780 YP_002735519.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_002735520.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002735521.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002735522.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_002735523.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_002735524.1 identified by match to protein family HMM PF01501 YP_002735525.1 required for 70S ribosome assembly YP_002735526.1 identified by match to protein family HMM PF03780 YP_002735527.1 identified by match to protein family HMM PF02734 YP_002735528.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_002735529.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_002735530.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_002735533.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic YP_002735536.1 identified by match to protein family HMM PF00005 YP_002735537.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002735540.1 identified by match to protein family HMM PF02371 YP_002735541.1 identified by Glimmer3; putative YP_002735542.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002735543.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_002735544.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255 YP_002735547.1 identified by Glimmer3; putative YP_002735548.1 identified by match to protein family HMM PF02386 YP_002735549.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_002735550.1 identified by match to protein family HMM PF01887 YP_002735551.1 identified by match to protein family HMM PF07155 YP_002735553.1 identified by match to protein family HMM PF00005 YP_002735554.1 identified by match to protein family HMM PF02361 YP_002735555.1 identified by match to protein family HMM PF00588 YP_002735557.1 identified by match to protein family HMM PF01569 YP_002735560.1 participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling YP_002735561.1 identified by Glimmer3; putative YP_002735562.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002735563.1 identified by match to protein family HMM PF00746; match to protein family HMM PF00754; match to protein family HMM PF03644; match to protein family HMM PF07501; match to protein family HMM PF07523; match to protein family HMM PF07554; match to protein family HMM TIGR01167 YP_002735564.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_002735566.1 identified by match to protein family HMM PF00376 YP_002735567.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_002735570.1 identified by match to protein family HMM PF01420 YP_002735571.1 identified by match to protein family HMM PF00589 YP_002735572.1 identified by match to protein family HMM PF01420 YP_002735573.1 identified by match to protein family HMM PF02384 YP_002735574.1 identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463 YP_002735577.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_002735578.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_002735579.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_002735580.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_002735583.1 identified by match to protein family HMM PF01230 YP_002735584.1 identified by match to protein family HMM PF00005 YP_002735585.1 identified by match to protein family HMM PF05975 YP_002735587.1 identified by match to protein family HMM PF04397 YP_002735588.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002735589.1 identified by match to protein family HMM PF02518 YP_002735590.1 identified by match to protein family HMM PF08128; match to protein family HMM TIGR01847 YP_002735591.1 identified by match to protein family HMM TIGR01000 YP_002735592.1 identified by match to protein family HMM TIGR01847 YP_002735594.1 identified by match to protein family HMM TIGR01847 YP_002735600.1 identified by match to protein family HMM PF02517 YP_002735602.1 identified by match to protein family HMM PF02517 YP_002735603.1 identified by match to protein family HMM PF01636 YP_002735604.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_002735605.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_002735606.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_002735607.1 identified by match to protein family HMM PF04296 YP_002735608.1 identified by match to protein family HMM PF01248 YP_002735609.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_002735610.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_002735613.1 identified by Glimmer3; putative YP_002735614.1 identified by match to protein family HMM PF08984 YP_002735615.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04282 YP_002735616.1 identified by match to protein family HMM PF08930 YP_002735618.1 identified by Glimmer3; putative YP_002735619.1 identified by Glimmer3; putative YP_002735620.1 identified by match to protein family HMM PF00583 YP_002735622.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_002735624.1 identified by match to protein family HMM PF02661 YP_002735625.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF01896; match to protein family HMM PF04851 YP_002735627.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_002735628.1 identified by match to protein family HMM PF00583 YP_002735629.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_002735630.1 identified by match to protein family HMM PF03372 YP_002735632.1 identified by match to protein family HMM PF01381 YP_002735633.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_002735634.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_002735635.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_002735636.1 identified by match to protein family HMM TIGR01172 YP_002735637.1 identified by match to protein family HMM PF00583 YP_002735638.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_002735639.1 identified by match to protein family HMM PF00636 YP_002735641.1 identified by match to protein family HMM PF01610 YP_002735645.1 identified by match to protein family HMM PF02687 YP_002735646.1 identified by match to protein family HMM PF00005 YP_002735647.1 identified by match to protein family HMM PF02687 YP_002735648.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002735649.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002735650.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_002735651.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF01794 YP_002735652.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002735653.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002735654.1 identified by match to protein family HMM PF00497 YP_002735655.1 identified by match to protein family HMM PF00005 YP_002735656.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_002735657.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_002735658.1 identified by match to protein family HMM PF00756 YP_002735659.1 identified by match to protein family HMM PF02388 YP_002735660.1 identified by match to protein family HMM PF02388 YP_002735661.1 identified by match to protein family HMM PF00413 YP_002735662.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_002735663.1 identified by match to protein family HMM PF00497 YP_002735664.1 identified by match to protein family HMM PF00881 YP_002735665.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases YP_002735666.1 identified by match to protein family HMM PF03167 YP_002735667.1 identified by Glimmer3; putative YP_002735668.1 identified by Glimmer3; putative YP_002735669.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002735670.1 identified by match to protein family HMM PF05343 YP_002735671.1 identified by match to protein family HMM PF01230 YP_002735672.1 identified by match to protein family HMM PF02557 YP_002735673.1 binds directly to 23S ribosomal RNA YP_002735674.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_002735676.1 identified by match to protein family HMM PF01610 YP_002735679.1 identified by match to protein family HMM PF00005 YP_002735680.1 identified by match to protein family HMM PF06182 YP_002735681.1 identified by match to protein family HMM PF06182 YP_002735683.1 identified by match to protein family HMM PF00082; match to protein family HMM PF00746; match to protein family HMM PF02225; match to protein family HMM PF06280; match to protein family HMM TIGR01167 YP_002735684.1 identified by match to protein family HMM PF00359 YP_002735686.1 identified by match to protein family HMM PF03611 YP_002735687.1 identified by match to protein family HMM PF00703; match to protein family HMM PF00746; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM PF07532; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_002735688.1 identified by Glimmer3; putative YP_002735690.1 identified by Glimmer3; putative YP_002735692.1 identified by match to protein family HMM PF06962 YP_002735694.1 identified by match to protein family HMM PF00999 YP_002735695.1 identified by match to protein family HMM PF03631 YP_002735696.1 identified by match to protein family HMM PF02683 YP_002735697.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002735698.1 identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401 YP_002735699.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165 YP_002735700.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF02743; match to protein family HMM PF06580 YP_002735701.1 identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440 YP_002735702.1 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00553 YP_002735704.1 identified by Glimmer3; putative YP_002735706.1 identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744 YP_002735707.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_002735709.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_002735710.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156 YP_002735712.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_002735713.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002735714.1 identified by match to protein family HMM PF00126 YP_002735715.1 identified by match to protein family HMM PF06014 YP_002735716.1 identified by match to protein family HMM PF00581 YP_002735717.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002735718.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_002735721.1 identified by match to protein family HMM PF00005 YP_002735722.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_002735723.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_002735724.1 identified by match to protein family HMM PF03799; match to protein family HMM PF08478 YP_002735725.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_002735726.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002735727.1 identified by Glimmer3; putative YP_002735731.1 identified by match to protein family HMM PF00005 YP_002735732.1 identified by match to protein family HMM PF00005 YP_002735733.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002735735.1 identified by Glimmer3; putative YP_002735737.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_002735738.1 identified by match to protein family HMM PF01070; match to protein family HMM PF01180; match to protein family HMM TIGR02708 YP_002735739.1 identified by match to protein family HMM PF03070 YP_002735740.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP YP_002735741.1 identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693 YP_002735743.1 identified by match to protein family HMM PF00005 YP_002735745.1 identified by match to protein family HMM PF03070 YP_002735746.1 identified by match to protein family HMM TIGR02359 YP_002735747.1 identified by match to protein family HMM PF02110 YP_002735748.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate YP_002735749.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine YP_002735750.1 identified by match to protein family HMM PF03965; match to protein family HMM TIGR02698 YP_002735752.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_002735753.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR02720 YP_002735754.1 identified by match to protein family HMM PF00903 YP_002735757.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218 YP_002735758.1 identified by match to protein family HMM PF00209 YP_002735760.1 identified by match to protein family HMM PF07739 YP_002735761.1 identified by match to protein family HMM PF00293 YP_002735762.1 identified by match to protein family HMM PF03486; match to protein family HMM TIGR00275 YP_002735763.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002735764.1 identified by match to protein family HMM PF00440 YP_002735765.1 identified by match to protein family HMM PF00383 YP_002735766.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_002735767.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_002735769.1 identified by match to protein family HMM PF01094 YP_002735770.1 identified by match to protein family HMM PF02653 YP_002735771.1 identified by match to protein family HMM PF02653 YP_002735772.1 identified by match to protein family HMM PF00005 YP_002735773.1 identified by match to protein family HMM PF00005 YP_002735774.1 identified by match to protein family HMM PF00571 YP_002735775.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1 YP_002735776.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673 YP_002735777.1 identified by match to protein family HMM PF02687 YP_002735778.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02003 YP_002735779.1 identified by match to protein family HMM PF03372 YP_002735780.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002735781.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_002735783.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; subclass 1A is a dimer formed by two identical PyrD subunits each containing an FMN group YP_002735784.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_002735785.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_002735786.1 identified by match to protein family HMM PF06265 YP_002735787.1 identified by match to protein family HMM TIGR00048 YP_002735788.1 identified by match to protein family HMM PF04892 YP_002735789.1 identified by match to protein family HMM PF00005 YP_002735790.1 identified by match to protein family HMM PF00160 YP_002735791.1 identified by Glimmer3; putative YP_002735792.1 identified by Glimmer3; putative YP_002735793.1 identified by Glimmer3; putative YP_002735794.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_002735796.1 identified by match to protein family HMM PF00561 YP_002735797.1 Essential for efficient processing of 16S rRNA YP_002735798.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_002735799.1 identified by match to protein family HMM PF03477 YP_002735803.1 identified by match to protein family HMM PF02632 YP_002735806.1 identified by match to protein family HMM PF00005 YP_002735808.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense YP_002735809.1 identified by match to protein family HMM TIGR01730 YP_002735810.1 identified by match to protein family HMM PF00005 YP_002735811.1 identified by match to protein family HMM PF02687 YP_002735812.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_002735813.1 identified by Glimmer3; putative YP_002735814.1 identified by match to protein family HMM PF03551 YP_002735816.1 identified by Glimmer3; putative YP_002735817.1 identified by match to protein family HMM PF00248 YP_002735819.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002735820.1 identified by match to protein family HMM PF00293 YP_002735821.1 identified by match to protein family HMM PF00583 YP_002735822.1 identified by match to protein family HMM PF02896 YP_002735823.1 identified by match to protein family HMM PF06171 YP_002735824.1 identified by match to protein family HMM PF01433 YP_002735825.1 identified by match to protein family HMM PF01610 YP_002735826.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002735827.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002735829.1 identified by match to protein family HMM PF01136 YP_002735830.1 unwinds DNA YP_002735831.1 identified by match to protein family HMM PF01098 YP_002735832.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383 YP_002735833.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002735834.1 negatively supercoils closed circular double-stranded DNA YP_002735835.1 acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation YP_002735836.1 identified by match to protein family HMM PF05717 YP_002735837.1 identified by match to protein family HMM PF08860 YP_002735838.1 identified by match to protein family HMM PF01710 YP_002735840.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_002735841.1 identified by match to protein family HMM PF08796 YP_002735842.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002735843.1 identified by match to protein family HMM PF00005 YP_002735844.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_002735846.1 identified by match to protein family HMM PF01256; match to protein family HMM TIGR00196 YP_002735847.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_002735848.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_002735849.1 identified by match to protein family HMM PF08002 YP_002735850.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_002735851.1 identified by Glimmer3; putative YP_002735852.1 identified by Glimmer3; putative YP_002735854.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate YP_002735856.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_002735857.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_002735858.1 identified by Glimmer3; putative YP_002735859.1 identified by match to protein family HMM PF05175 YP_002735860.1 Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway YP_002735861.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_002735862.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_002735863.1 identified by match to protein family HMM PF02608 YP_002735864.1 identified by match to protein family HMM PF00005 YP_002735865.1 identified by match to protein family HMM PF02653 YP_002735866.1 identified by match to protein family HMM PF02653 YP_002735869.1 identified by match to protein family HMM PF00665 YP_002735870.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_002735871.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002735872.1 identified by Glimmer3; putative YP_002735873.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002735874.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_002735876.1 identified by match to protein family HMM PF06149 YP_002735877.1 identified by match to protein family HMM PF06166 YP_002735878.1 catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline YP_002735880.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_002735882.1 identified by match to protein family HMM PF01610 YP_002735885.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_002735887.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_002735888.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981 YP_002735889.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979 YP_002735890.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994 YP_002735891.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980 YP_002735892.1 identified by match to protein family HMM PF00144; match to protein family HMM PF00768; match to protein family HMM PF07943 YP_002735893.1 identified by match to protein family HMM PF01594 YP_002735894.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002735895.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_002735896.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427 YP_002735897.1 identified by Glimmer3; putative YP_002735898.1 identified by match to protein family HMM PF01580 YP_002735900.1 identified by match to protein family HMM PF00266 YP_002735901.1 Required for the synthesis of the thiazole moiety YP_002735902.1 identified by match to protein family HMM PF00756 YP_002735904.1 identified by match to protein family HMM PF02384 YP_002735905.1 identified by match to protein family HMM PF01420 YP_002735906.1 identified by match to protein family HMM PF01420 YP_002735908.1 identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550 YP_002735909.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_002735910.1 identified by match to protein family HMM PF01420 YP_002735911.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851 YP_002735912.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863 YP_002735913.1 catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue YP_002735914.1 Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria. YP_002735915.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_002735916.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002735919.1 identified by Glimmer3; putative YP_002735920.1 identified by Glimmer3; putative YP_002735921.1 identified by match to protein family HMM PF09323 YP_002735922.1 identified by match to protein family HMM PF03773 YP_002735923.1 identified by Glimmer3; putative YP_002735924.1 identified by Glimmer3; putative YP_002735925.1 identified by match to protein family HMM PF00575 YP_002735926.1 identified by match to protein family HMM PF03926 YP_002735927.1 identified by match to protein family HMM PF04024 YP_002735929.1 identified by match to protein family HMM PF00005 YP_002735930.1 identified by match to protein family HMM PF02687 YP_002735931.1 identified by match to protein family HMM PF01988 YP_002735932.1 identified by match to protein family HMM PF00665 YP_002735934.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711 YP_002735937.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_002735938.1 identified by match to protein family HMM PF03435 YP_002735939.1 identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047 YP_002735940.1 catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis YP_002735941.1 identified by match to protein family HMM PF00795; match to protein family HMM TIGR03381 YP_002735942.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002735944.1 identified by match to protein family HMM PF02517 YP_002735945.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002735946.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_002735947.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_002735948.1 identified by match to protein family HMM PF00753; match to protein family HMM PF01473 YP_002735949.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_002735950.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_002735951.1 identified by match to protein family HMM PF01210; match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR00112 YP_002735952.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_002735953.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA. YP_002735954.1 in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA YP_002735955.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_002735956.1 identified by match to protein family HMM PF08020 YP_002735957.1 identified by match to protein family HMM PF06970 YP_002735958.1 identified by match to protein family HMM PF01609 YP_002735960.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_002735961.1 Catalyzes the phosphorylation of UMP to UDP YP_002735962.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_002735964.1 identified by match to protein family HMM PF06855 YP_002735965.1 identified by match to protein family HMM PF02562 YP_002735966.1 identified by Glimmer3; putative YP_002735967.1 identified by match to protein family HMM PF00583 YP_002735969.1 identified by match to protein family HMM PF00583 YP_002735970.1 identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426; match to protein family HMM TIGR01259 YP_002735971.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361 YP_002735972.1 identified by match to protein family HMM PF00005 YP_002735974.1 identified by Glimmer3; putative YP_002735975.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_002735976.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_002735977.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_002735978.1 identified by match to protein family HMM PF00903 YP_002735979.1 responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+) YP_002735980.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits YP_002735981.1 identified by match to protein family HMM PF01473; match to protein family HMM PF01832 YP_002735982.1 identified by match to protein family HMM PF05670; match to protein family HMM PF05833 YP_002735983.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_002735984.1 identified by match to protein family HMM PF01219 YP_002735985.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_002735986.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_002735987.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_002735988.1 identified by match to protein family HMM PF07690 YP_002735989.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_002735990.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_002735991.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_002735992.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_002735993.1 with TehA confers resistance to tellurite YP_002735994.1 identified by match to protein family HMM PF06054 YP_002735995.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181 YP_002735996.1 identified by match to protein family HMM PF01596; match to protein family HMM PF08241 YP_002735997.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein YP_002736000.1 identified by match to protein family HMM PF00300 YP_002736001.1 identified by match to protein family HMM PF04073 YP_002736002.1 identified by match to protein family HMM PF04018 YP_002736003.1 identified by match to protein family HMM PF01183 YP_002736004.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_002736005.1 identified by match to protein family HMM PF00293 YP_002736007.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_002736008.1 identified by match to protein family HMM PF04394 YP_002736009.1 3'-5' exonuclease of DNA polymerase III YP_002736010.1 identified by match to protein family HMM PF03009 YP_002736011.1 identified by match to protein family HMM PF01710 YP_002736015.1 identified by match to protein family HMM PF02683 YP_002736016.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002736017.1 identified by match to protein family HMM PF00324 YP_002736018.1 identified by match to protein family HMM PF01297 YP_002736019.1 identified by match to protein family HMM PF04270; match to protein family HMM TIGR01363 YP_002736020.1 identified by match to protein family HMM PF04270; match to protein family HMM TIGR01363 YP_002736021.1 identified by Glimmer3; putative YP_002736023.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_002736024.1 identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109 YP_002736025.1 identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220 YP_002736026.1 identified by match to protein family HMM PF04138 YP_002736027.1 identified by match to protein family HMM PF06177 YP_002736028.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_002736029.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_002736030.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_002736031.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown YP_002736032.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_002736033.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_002736034.1 identified by match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387 YP_002736035.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057 YP_002736036.1 identified by match to protein family HMM PF00583 YP_002736037.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_002736040.1 identified by match to protein family HMM PF06207 YP_002736041.1 identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_002736043.1 identified by match to protein family HMM PF01497 YP_002736044.1 identified by match to protein family HMM PF01032 YP_002736045.1 identified by match to protein family HMM PF01032 YP_002736046.1 identified by match to protein family HMM PF00005 YP_002736047.1 identified by match to protein family HMM PF07674 YP_002736052.1 identified by Glimmer3; putative YP_002736053.1 identified by match to protein family HMM PF03747 YP_002736054.1 identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147 YP_002736055.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02903 YP_002736060.1 identified by match to protein family HMM PF06414 YP_002736061.1 identified by Glimmer3; putative YP_002736062.1 identified by Glimmer3; putative YP_002736063.1 identified by Glimmer3; putative YP_002736064.1 identified by match to protein family HMM PF05713 YP_002736066.1 identified by match to protein family HMM TIGR01716 YP_002736067.1 identified by Glimmer3; putative YP_002736068.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463; match to protein family HMM PF03412 YP_002736070.1 identified by match to protein family HMM PF00005 YP_002736073.1 identified by match to protein family HMM PF01381 YP_002736074.1 identified by Glimmer3; putative YP_002736075.1 identified by match to protein family HMM PF01098 YP_002736076.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_002736077.1 identified by match to protein family HMM PF04392 YP_002736078.1 identified by match to protein family HMM PF02653 YP_002736079.1 identified by match to protein family HMM PF00005 YP_002736080.1 synthesizes RNA primers at the replication forks YP_002736081.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium YP_002736082.1 identified by match to protein family HMM PF01883 YP_002736083.1 identified by match to protein family HMM PF00534 YP_002736084.1 identified by match to protein family HMM PF00534 YP_002736085.1 identified by match to protein family HMM PF04024 YP_002736087.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_002736089.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002736090.1 identified by match to protein family HMM PF00583 YP_002736091.1 identified by match to protein family HMM PF00571; match to protein family HMM PF07085; match to protein family HMM PF08279 YP_002736092.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides YP_002736094.1 identified by match to protein family HMM PF01609 YP_002736095.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073 YP_002736096.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_002736097.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722 YP_002736098.1 modulates transcription in response to the NADH/NAD(+) redox state YP_002736100.1 identified by match to protein family HMM PF08866 YP_002736101.1 identified by match to protein family HMM PF00266 YP_002736102.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002736103.1 identified by match to protein family HMM PF01928 YP_002736104.1 identified by match to protein family HMM PF04607 YP_002736105.1 catalyzes the phosphorylation of NAD to NADP YP_002736106.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 YP_002736107.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta YP_002736109.1 identified by match to protein family HMM PF01610 YP_002736111.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_002736112.1 identified by match to protein family HMM PF06912 YP_002736113.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_002736114.1 identified by match to protein family HMM PF04327 YP_002736115.1 involved in the peptidyltransferase reaction during translation YP_002736116.1 identified by Glimmer3; putative YP_002736118.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_002736119.1 identified by match to protein family HMM PF02588 YP_002736120.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002736121.1 identified by match to protein family HMM PF00216 YP_002736122.1 identified by match to protein family HMM PF00005 YP_002736123.1 identified by match to protein family HMM TIGR01716 YP_002736124.1 identified by match to protein family HMM PF07690 YP_002736125.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_002736126.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104 YP_002736127.1 identified by match to protein family HMM PF00171 YP_002736128.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_002736129.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_002736130.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR02092 YP_002736131.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_002736132.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_002736133.1 identified by match to protein family HMM PF07997 YP_002736134.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_002736135.1 identified by match to protein family HMM PF00589 YP_002736137.1 identified by match to protein family HMM PF01710 YP_002736138.1 identified by match to protein family HMM TIGR02774 YP_002736139.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785 YP_002736141.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF05342; match to protein family HMM PF07501; match to protein family HMM PF07580; match to protein family HMM PF07581; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_002736142.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05342; match to protein family HMM PF07501; match to protein family HMM PF07580; match to protein family HMM TIGR01167 YP_002736143.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_002736144.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_002736145.1 identified by match to protein family HMM PF00654; match to protein family HMM PF02080 YP_002736146.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS YP_002736147.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545 YP_002736148.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_002736149.1 unlike PdhC proteins from other organisms, some Mycoplasma lack an N-terminal lipoyl domain; in Mycoplasma hyopneumonia the PdhD proteins contains the lipoyl domain YP_002736150.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002736151.1 identified by match to protein family HMM PF00676 YP_002736152.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002736153.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_002736154.1 identified by match to protein family HMM PF00293 YP_002736155.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_002736156.1 identified by Glimmer3; putative YP_002736157.1 identified by Glimmer3; putative YP_002736158.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254 YP_002736159.1 identified by match to protein family HMM PF04270; match to protein family HMM TIGR01363 YP_002736160.1 identified by Glimmer3; putative YP_002736161.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_002736162.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_002736163.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194 YP_002736164.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002736165.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_002736166.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002736167.1 identified by Glimmer3; putative YP_002736168.1 catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside YP_002736169.1 identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00394; match to protein family HMM TIGR00410; match to protein family HMM TIGR00853 YP_002736170.1 identified by match to protein family HMM PF02255; match to protein family HMM TIGR00823 YP_002736171.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_002736172.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources YP_002736173.1 catalyzes the formation of tagatose 1,6-bisphosphate from tagatose 6-phosphate and ATP YP_002736174.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate YP_002736175.1 catalyzes the interconversion of galactose 6-phosphate to tagatose 6-phosphate; tagatose pathway for galactose utilization YP_002736184.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002736185.1 identified by match to protein family HMM PF00149 YP_002736186.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634 YP_002736187.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863 YP_002736188.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_002736189.1 identified by match to protein family HMM PF00348 YP_002736190.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_002736191.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_002736192.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_002736194.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_002736196.1 identified by match to protein family HMM PF01226 YP_002736197.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_002736198.1 negatively supercoils closed circular double-stranded DNA YP_002736199.1 Converts (S)-lactate and NAD(+) to pyruvate and NADH YP_002736200.1 identified by match to protein family HMM PF00520; match to protein family HMM PF07885 YP_002736201.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385 YP_002736203.1 identified by match to protein family HMM PF00753 YP_002736204.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_002736205.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002736206.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 YP_002736207.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_002736208.1 identified by match to protein family HMM PF04127; match to protein family HMM TIGR02114 YP_002736209.1 decarboxylates 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine. YP_002736212.1 identified by match to protein family HMM PF02829; match to protein family HMM PF08279 YP_002736213.1 identified by match to protein family HMM PF00293 YP_002736214.1 identified by match to protein family HMM PF00583 YP_002736216.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_002736217.1 identified by match to protein family HMM PF02517 YP_002736218.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002736219.1 identified by match to protein family HMM PF00005 YP_002736220.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_002736221.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_002736222.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002736223.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002736224.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168 YP_002736225.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_002736226.1 identified by match to protein family HMM PF00478; match to protein family HMM TIGR01306 YP_002736229.1 identified by Glimmer3; putative YP_002736230.1 identified by Glimmer3; putative YP_002736231.1 identified by Glimmer3; putative YP_002736233.1 identified by match to protein family HMM PF06961 YP_002736234.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_002736235.1 identified by match to protein family HMM PF04237 YP_002736236.1 identified by match to protein family HMM PF03932 YP_002736237.1 identified by match to protein family HMM PF04304 YP_002736238.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_002736239.1 identified by match to protein family HMM PF04087 YP_002736241.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_002736242.1 identified by match to protein family HMM PF00483 YP_002736243.1 identified by match to protein family HMM PF00892 YP_002736244.1 identified by match to protein family HMM PF01633; match to protein family HMM PF01636 YP_002736245.1 identified by match to protein family HMM PF08240 YP_002736246.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_002736247.1 identified by match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002736248.1 required for phosphorylcholine incorporation in teichoic and lipoteichoic acids; identified by match to protein family HMM PF04991 YP_002736249.1 identified by match to protein family HMM PF04991 YP_002736250.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_002736251.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_002736252.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_002736253.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_002736254.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_002736255.1 identified by match to protein family HMM PF02620 YP_002736256.1 identified by Glimmer3; putative YP_002736257.1 identified by match to protein family HMM PF00665 YP_002736258.1 identified by match to protein family HMM PF00005 YP_002736259.1 putative metalloprotease YP_002736260.1 identified by match to protein family HMM PF04011 YP_002736261.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_002736262.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_002736263.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_002736264.1 identified by match to protein family HMM PF04297; match to protein family HMM PF04967; match to protein family HMM PF08281 YP_002736265.1 identified by match to protein family HMM PF09148 YP_002736266.1 identified by match to protein family HMM PF01966 YP_002736267.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002736268.1 identified by match to protein family HMM PF02037 YP_002736269.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_002736270.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_002736271.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_002736272.1 identified by match to protein family HMM PF01817; match to protein family HMM TIGR01805 YP_002736273.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_002736274.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_002736275.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_002736279.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_002736281.1 identified by match to protein family HMM PF00005 YP_002736289.1 identified by match to protein family HMM PF05717 YP_002736291.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex YP_002736292.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex YP_002736293.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex YP_002736294.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex YP_002736295.1 identified by match to protein family HMM PF01992 YP_002736297.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits YP_002736298.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel. YP_002736300.1 identified by match to protein family HMM PF00480 YP_002736301.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447 YP_002736302.1 identified by match to protein family HMM PF02012; match to protein family HMM PF02973 YP_002736303.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022 YP_002736304.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813 YP_002736305.1 identified by match to protein family HMM PF00701 YP_002736306.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate YP_002736307.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002736308.1 identified by match to protein family HMM PF02517 YP_002736309.1 identified by Glimmer3; putative YP_002736312.1 identified by match to protein family HMM PF06970 YP_002736314.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_002736315.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002736316.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_002736317.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002736318.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002736319.1 identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401 YP_002736320.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_002736321.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_002736322.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence YP_002736325.1 identified by match to protein family HMM PF00535 YP_002736326.1 identified by match to protein family HMM PF00534 YP_002736327.1 identified by match to protein family HMM PF04991 YP_002736328.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002736329.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis YP_002736330.1 identified by match to protein family HMM PF01202 YP_002736331.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_002736332.1 identified by match to protein family HMM PF06133 YP_002736333.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate YP_002736334.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002736335.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_002736336.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_002736337.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis YP_002736340.1 identified by match to protein family HMM PF00005 YP_002736341.1 converts 1,4-alpha-D-glucans to maltodextrin YP_002736342.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002736343.1 identified by match to protein family HMM PF04525 YP_002736345.1 identified by match to protein family HMM PF01547 YP_002736346.1 identified by match to protein family HMM PF00528 YP_002736347.1 identified by match to protein family HMM PF00528 YP_002736348.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402 YP_002736349.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_002736351.1 identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252 YP_002736352.1 identified by match to protein family HMM PF00392 YP_002736353.1 identified by match to protein family HMM PF00497 YP_002736354.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_002736355.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002736356.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002736357.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_002736358.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_002736359.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136 YP_002736361.1 identified by match to protein family HMM PF01189 YP_002736362.1 identified by match to protein family HMM PF00459 YP_002736363.1 identified by match to protein family HMM PF05256 YP_002736364.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress YP_002736365.1 identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906 YP_002736366.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460 YP_002736367.1 identified by match to protein family HMM PF01643 YP_002736368.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002736370.1 identified by match to protein family HMM PF06103 YP_002736371.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_002736372.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_002736373.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_002736374.1 identified by match to protein family HMM PF01182 YP_002736375.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_002736376.1 identified by match to protein family HMM PF01473 YP_002736377.1 identified by match to protein family HMM PF00583 YP_002736378.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_002736379.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_002736381.1 identified by match to protein family HMM PF01381 YP_002736382.1 identified by Glimmer3; putative YP_002736383.1 identified by match to protein family HMM PF01136 YP_002736384.1 identified by match to protein family HMM PF05495 YP_002736385.1 identified by match to protein family HMM PF01136 YP_002736386.1 identified by match to protein family HMM PF01555 YP_002736388.1 identified by match to protein family HMM PF00165 YP_002736389.1 identified by match to protein family HMM PF00005 YP_002736390.1 identified by match to protein family HMM PF00005 YP_002736391.1 identified by match to protein family HMM TIGR02185 YP_002736392.1 identified by match to protein family HMM PF02361 YP_002736393.1 identified by match to protein family HMM PF00005 YP_002736398.1 identified by match to protein family HMM PF05717 YP_002736400.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_002736401.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002736402.1 identified by match to protein family HMM PF00892 YP_002736403.1 identified by match to protein family HMM PF00144 YP_002736405.1 identified by match to protein family HMM PF00657 YP_002736406.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002736409.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002736410.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_002736411.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_002736413.1 identified by match to protein family HMM PF00005 YP_002736414.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002736415.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_002736416.1 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_002736417.1 identified by match to protein family HMM PF00583 YP_002736418.1 identified by match to protein family HMM PF08876 YP_002736419.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_002736420.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate YP_002736421.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_002736422.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_002736424.1 identified by match to protein family HMM PF02424 YP_002736425.1 identified by match to protein family HMM PF03358 YP_002736426.1 identified by match to protein family HMM PF03358 YP_002736427.1 identified by match to protein family HMM PF05979 YP_002736428.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002736429.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002736431.1 identified by match to protein family HMM PF00248 YP_002736432.1 identified by match to protein family HMM PF01522 YP_002736434.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408 YP_002736435.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002736437.1 identified by match to protein family HMM PF01610 YP_002736440.1 identified by match to protein family HMM PF01610 YP_002736442.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002736443.1 identified by match to protein family HMM PF00665 YP_002736445.1 identified by match to protein family HMM PF00230 YP_002736446.1 identified by match to protein family HMM PF00746; match to protein family HMM PF06458; match to protein family HMM TIGR01167 YP_002736447.1 identified by Glimmer3; putative YP_002736448.1 identified by Glimmer3; putative YP_002736453.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_002736454.1 identified by match to protein family HMM TIGR01295 YP_002736455.1 identified by match to protein family HMM PF00497 YP_002736456.1 identified by match to protein family HMM PF00005 YP_002736457.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002736458.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002736459.1 identified by match to protein family HMM PF01594 YP_002736461.1 identified by match to protein family HMM PF01610 YP_002736463.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_002736464.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_002736465.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_002736466.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002736467.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_002736468.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_002736469.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_002736470.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_002736471.1 identified by match to protein family HMM PF00665 YP_002736472.1 identified by match to protein family HMM PF00583 YP_002736473.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_002736474.1 identified by match to protein family HMM PF00583 YP_002736475.1 identified by match to protein family HMM PF00583 YP_002736476.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_002736478.1 identified by match to protein family HMM PF00155 YP_002736479.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine YP_002736480.1 identified by match to protein family HMM PF00496 YP_002736481.1 identified by match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002736482.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of lysine to UDP-N-acetylmuramoyl-L-alanyl-D-glutamate forming UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine YP_002736483.1 identified by match to protein family HMM PF05532 YP_002736484.1 identified by match to protein family HMM PF08820 YP_002736486.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_002736487.1 identified by match to protein family HMM PF01541 YP_002736488.1 identified by match to protein family HMM PF05175 YP_002736489.1 identified by match to protein family HMM PF00575 YP_002736490.1 identified by match to protein family HMM PF00160; match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002736491.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_002736492.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_002736493.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_002736494.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002736495.1 identified by match to protein family HMM PF00903 YP_002736496.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002736497.1 identified by match to protein family HMM PF03413 YP_002736498.1 identified by Glimmer3; putative YP_002736499.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_002736500.1 identified by match to protein family HMM PF01391; match to protein family HMM PF04650; match to protein family HMM PF07501; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168 YP_002736501.1 identified by match to protein family HMM PF05043; match to protein family HMM PF08270; match to protein family HMM PF08279; match to protein family HMM PF08280 YP_002736502.1 identified by match to protein family HMM PF03883 YP_002736505.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002736506.1 YghU; B2989; one of eight putative glutathione transferase proteins from E. coli YP_002736507.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002736508.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002736509.1 identified by match to protein family HMM PF00005 YP_002736510.1 catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity YP_002736511.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_002736512.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002736513.1 identified by match to protein family HMM PF06619 YP_002736514.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_002736515.1 identified by match to protein family HMM PF07949 YP_002736516.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159 YP_002736517.1 identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002736518.1 identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647 YP_002736519.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826 YP_002736520.1 identified by match to protein family HMM PF03668 YP_002736521.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_002736522.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_002736523.1 binds and unfolds substrates as part of the ClpXP protease YP_002736525.1 identified by match to protein family HMM PF00186 YP_002736526.1 identified by match to protein family HMM PF00210 YP_002736527.1 identified by match to protein family HMM PF01183; match to protein family HMM PF01473 YP_002736528.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_002736529.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_002736530.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_002736531.1 identified by Glimmer3; putative YP_002736532.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_002736533.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002736535.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402 YP_002736536.1 identified by match to protein family HMM PF00857 YP_002736537.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_002736538.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002736539.1 identified by match to protein family HMM PF07690 YP_002736540.1 Involved in disulfide oxidoreductase activity and electron transport YP_002736541.1 identified by match to protein family HMM PF08245; match to protein family HMM PF08353 YP_002736542.1 identified by match to protein family HMM PF07685 YP_002736543.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_002736545.1 identified by match to protein family HMM PF00665 YP_002736549.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine YP_002736550.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_002736552.1 identified by match to protein family HMM PF07690 YP_002736553.1 identified by Glimmer3; putative YP_002736555.1 identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686 YP_002736556.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_002736559.1 identified by match to protein family HMM PF00535 YP_002736560.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_002736562.1 identified by match to protein family HMM PF01266 YP_002736563.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_002736564.1 identified by match to protein family HMM PF04816 YP_002736565.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002736566.1 identified by match to protein family HMM PF01553 YP_002736567.1 identified by match to protein family HMM PF03596; match to protein family HMM TIGR00779 YP_002736568.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_002736571.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_002736572.1 identified by match to protein family HMM PF02518 YP_002736573.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002736576.1 identified by match to protein family HMM PF02082 YP_002736577.1 identified by match to protein family HMM PF00149 YP_002736578.1 identified by match to protein family HMM PF01047; match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023 YP_002736579.1 identified by Glimmer3; putative YP_002736580.1 identified by Glimmer3; putative YP_002736583.1 identified by Glimmer3; putative YP_002736585.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_002736586.1 identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_002736587.1 identified by Glimmer3; putative YP_002736588.1 identified by match to protein family HMM PF00753 YP_002736589.1 identified by match to protein family HMM PF01431; match to protein family HMM PF05649 YP_002736590.1 identified by match to protein family HMM PF00005 YP_002736591.1 identified by match to protein family HMM PF00950 YP_002736592.1 identified by match to protein family HMM PF01297 YP_002736593.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein YP_002736595.1 identified by match to protein family HMM PF02687 YP_002736596.1 identified by match to protein family HMM PF00005 YP_002736598.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_002736601.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_002736603.1 identified by match to protein family HMM PF05103 YP_002736604.1 identified by match to protein family HMM PF01479 YP_002736605.1 identified by match to protein family HMM PF02325 YP_002736606.1 identified by match to protein family HMM PF04472 YP_002736607.1 identified by match to protein family HMM TIGR00044 YP_002736608.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_002736609.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_002736610.1 identified by match to protein family HMM TIGR02206 YP_002736611.1 identified by match to protein family HMM PF00293 YP_002736612.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143 YP_002736613.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_002736614.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_002736615.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002736616.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002736617.1 identified by match to protein family HMM PF00480 YP_002736618.1 identified by match to protein family HMM PF00701 YP_002736619.1 identified by match to protein family HMM PF04854 YP_002736621.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022 YP_002736622.1 identified by match to protein family HMM PF00528 YP_002736623.1 identified by match to protein family HMM PF00528 YP_002736624.1 identified by match to protein family HMM PF01547 YP_002736625.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_002736626.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate YP_002736627.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447 YP_002736628.1 identified by match to protein family HMM PF02012; match to protein family HMM PF02973 YP_002736629.1 identified by match to protein family HMM PF00528 YP_002736630.1 identified by match to protein family HMM PF00528 YP_002736631.1 identified by match to protein family HMM PF01547 YP_002736632.1 identified by match to protein family HMM PF04074; match to protein family HMM TIGR00022 YP_002736633.1 identified by match to protein family HMM PF02012; match to protein family HMM PF02973; match to protein family HMM TIGR01167 YP_002736636.1 identified by match to protein family HMM PF05448 YP_002736637.1 catalyzes branch migration in Holliday junction intermediates YP_002736638.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_002736639.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_002736640.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_002736641.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive YP_002736642.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_002736644.1 identified by match to protein family HMM PF00005 YP_002736648.1 identified by match to protein family HMM PF01381; match to protein family HMM TIGR01716 YP_002736651.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_002736652.1 identified by match to protein family HMM PF00881 YP_002736653.1 Primosomal protein that may act to load helicase DnaC during DNA replication YP_002736654.1 identified by match to protein family HMM PF07261 YP_002736655.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_002736656.1 identified by match to protein family HMM PF00392 YP_002736657.1 identified by match to protein family HMM PF00005 YP_002736660.1 identified by match to protein family HMM PF00005 YP_002736662.1 identified by match to protein family HMM PF09335 YP_002736663.1 identified by match to protein family HMM PF00480 YP_002736664.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01996 YP_002736666.1 identified by match to protein family HMM PF00251; match to protein family HMM PF08244; match to protein family HMM TIGR01322 YP_002736667.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002736668.1 identified by match to protein family HMM TIGR00532 YP_002736669.1 identified by match to protein family HMM PF01154; match to protein family HMM PF08540; match to protein family HMM TIGR01835 YP_002736671.1 identified by match to protein family HMM PF01609 YP_002736674.1 identified by match to protein family HMM PF06738 YP_002736675.1 identified by match to protein family HMM PF00069; match to protein family HMM PF01163; match to protein family HMM PF03793 YP_002736676.1 identified by match to protein family HMM PF00481 YP_002736677.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_002736678.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_002736679.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_002736680.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_002736681.1 Essential for recycling GMP and indirectly, cGMP YP_002736682.1 identified by match to protein family HMM PF00013; match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR03319 YP_002736683.1 identified by match to protein family HMM PF06769; match to protein family HMM TIGR02116 YP_002736684.1 identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552 YP_002736685.1 identified by match to protein family HMM PF05636 YP_002736686.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002736687.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_002736688.1 identified by match to protein family HMM PF00857 YP_002736689.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488 YP_002736690.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_002736691.1 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253 YP_002736692.1 in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis YP_002736693.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01668 YP_002736694.1 identified by match to protein family HMM PF01544 YP_002736695.1 identified by match to protein family HMM PF00924 YP_002736696.1 identified by match to protein family HMM PF06081 YP_002736699.1 identified by match to protein family HMM TIGR02919 YP_002736700.1 identified by match to protein family HMM PF00534; match to protein family HMM PF09318; match to protein family HMM TIGR02918 YP_002736701.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins YP_002736705.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002736706.1 identified by match to protein family HMM PF00535 YP_002736707.1 identified by match to protein family HMM PF01501 YP_002736708.1 identified by match to protein family HMM PF01501 YP_002736709.1 identified by match to protein family HMM PF01501; match to protein family HMM PF08759 YP_002736711.1 identified by match to protein family HMM PF00535 YP_002736712.1 identified by match to protein family HMM PF01501 YP_002736713.1 identified by match to protein family HMM PF00535; match to protein family HMM PF01501 YP_002736715.1 identified by match to protein family HMM PF01047 YP_002736717.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_002736718.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_002736719.1 identified by Glimmer3; putative YP_002736720.1 identified by match to protein family HMM PF00230 YP_002736722.1 identified by Glimmer3; putative YP_002736723.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181 YP_002736724.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_002736725.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_002736728.1 identified by match to protein family HMM PF00004 YP_002736730.1 identified by match to protein family HMM PF02163 YP_002736732.1 identified by match to protein family HMM PF03681 YP_002736733.1 identified by match to protein family HMM PF07927 YP_002736735.1 identified by match to protein family HMM PF00004 YP_002736736.1 identified by match to protein family HMM PF00251; match to protein family HMM TIGR01322 YP_002736737.1 identified by match to protein family HMM PF01547 YP_002736738.1 identified by match to protein family HMM PF00528 YP_002736739.1 identified by match to protein family HMM PF00528 YP_002736740.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002736741.1 identified by match to protein family HMM PF05043; match to protein family HMM PF08270; match to protein family HMM PF08279; match to protein family HMM PF08280 YP_002736742.1 identified by Glimmer3; putative YP_002736745.1 identified by match to protein family HMM PF03780 YP_002736746.1 identified by match to protein family HMM PF05532 YP_002736748.1 identified by Glimmer3; putative YP_002736749.1 identified by match to protein family HMM PF01925 YP_002736750.1 identified by match to protein family HMM PF03781 YP_002736751.1 can hydrolyze p-nitrophenyl sulfate; contains a specific cysteine that is converted into C{alpha]-formylglycine upon activation with the anaerobic sulfatase-maturase YP_002736752.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002736753.1 identified by match to protein family HMM PF02255 YP_002736754.1 identified by match to protein family HMM PF02302 YP_002736756.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002736757.1 identified by match to protein family HMM PF00480 YP_002736758.1 identified by match to protein family HMM PF00583 YP_002736759.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750 YP_002736760.1 identified by match to protein family HMM PF01381; match to protein family HMM PF06114 YP_002736762.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_002736763.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_002736764.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_002736765.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_002736766.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002736767.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_002736768.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_002736769.1 identified by Glimmer3; putative YP_002736770.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002736772.1 identified by match to protein family HMM PF02308 YP_002736773.1 identified by match to protein family HMM PF00528 YP_002736774.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402 YP_002736776.1 identified by match to protein family HMM PF08975 YP_002736778.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_002736779.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism YP_002736780.1 identified by match to protein family HMM PF01895 YP_002736783.1 identified by match to protein family HMM PF04650; match to protein family HMM TIGR01168 YP_002736785.1 identified by match to protein family HMM PF01041 YP_002736786.1 identified by match to protein family HMM PF02397 YP_002736787.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002736788.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002736789.1 identified by match to protein family HMM PF04239 YP_002736790.1 identified by Glimmer3; putative YP_002736791.1 identified by Glimmer3; putative YP_002736792.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_002736793.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_002736794.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_002736796.1 identified by match to protein family HMM PF06044 YP_002736797.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_002736798.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism YP_002736799.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism YP_002736800.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002736801.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002736802.1 identified by match to protein family HMM PF00376 YP_002736803.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002736804.1 identified by match to protein family HMM PF00440 YP_002736805.1 identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528 YP_002736806.1 identified by Glimmer3; putative YP_002736807.1 identified by match to protein family HMM PF00528; match to protein family HMM PF04069 YP_002736808.1 identified by match to protein family HMM PF00005 YP_002736809.1 identified by match to protein family HMM PF07366 YP_002736810.1 identified by match to protein family HMM PF01047 YP_002736811.1 identified by match to protein family HMM PF08957 YP_002736812.1 identified by match to protein family HMM PF05343; match to protein family HMM TIGR03107 YP_002736814.1 identified by match to protein family HMM PF01032 YP_002736815.1 identified by match to protein family HMM PF01032 YP_002736816.1 identified by match to protein family HMM PF00005 YP_002736817.1 identified by match to protein family HMM PF01497 YP_002736818.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_002736819.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002736820.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer YP_002736821.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB YP_002736822.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_002736823.1 identified by match to protein family HMM PF00571 YP_002736824.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_002736825.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_002736826.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_002736827.1 identified by match to protein family HMM PF03672 YP_002736828.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403 YP_002736829.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR01992 YP_002736830.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404 YP_002736831.1 identified by match to protein family HMM PF00005 YP_002736832.1 identified by match to protein family HMM PF02653 YP_002736833.1 identified by match to protein family HMM PF04392 YP_002736834.1 identified by Glimmer3; putative YP_002736835.1 identified by Glimmer3; putative YP_002736836.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352 YP_002736837.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002736838.1 identified by match to protein family HMM PF00528 YP_002736839.1 identified by match to protein family HMM PF00528 YP_002736840.1 identified by match to protein family HMM PF00496 YP_002736841.1 identified by match to protein family HMM PF04932 YP_002736842.1 identified by match to protein family HMM PF00128 YP_002736844.1 identified by match to protein family HMM PF00528 YP_002736845.1 identified by match to protein family HMM PF00528 YP_002736846.1 identified by match to protein family HMM PF01547 YP_002736847.1 identified by match to protein family HMM PF02065 YP_002736848.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_002736849.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon YP_002736850.1 identified by match to protein family HMM PF01610 YP_002736852.1 identified by match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_002736853.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_002736854.1 identified by match to protein family HMM PF04167 YP_002736855.1 identified by match to protein family HMM PF01610 YP_002736856.1 identified by match to protein family HMM PF01610 YP_002736858.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_002736859.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_002736860.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_002736861.1 identified by Glimmer3; putative YP_002736862.1 identified by match to protein family HMM PF01473; match to protein family HMM PF01510 YP_002736863.1 identified by match to protein family HMM TIGR01673 YP_002736867.1 identified by Glimmer3; putative YP_002736868.1 identified by match to protein family HMM PF02018 YP_002736871.1 identified by Glimmer3; putative YP_002736876.1 identified by Glimmer3; putative YP_002736878.1 identified by Glimmer3; putative YP_002736879.1 identified by match to protein family HMM PF07498 YP_002736884.1 identified by match to protein family HMM PF01966 YP_002736885.1 identified by Glimmer3; putative YP_002736886.1 identified by match to protein family HMM PF04233; match to protein family HMM TIGR01641 YP_002736887.1 identified by match to protein family HMM PF05133; match to protein family HMM TIGR01538 YP_002736888.1 identified by match to protein family HMM PF04466; match to protein family HMM PF07570; match to protein family HMM TIGR01547 YP_002736889.1 identified by match to protein family HMM PF03592 YP_002736891.1 identified by match to protein family HMM TIGR01671 YP_002736893.1 identified by Glimmer3; putative YP_002736894.1 identified by match to protein family HMM PF07852 YP_002736896.1 identified by match to protein family HMM PF05866 YP_002736898.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_002736900.1 identified by Glimmer3; putative YP_002736901.1 identified by match to protein family HMM PF07083 YP_002736902.1 identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913 YP_002736904.1 identified by Glimmer3; putative YP_002736905.1 identified by Glimmer3; putative YP_002736906.1 identified by Glimmer3; putative YP_002736907.1 identified by Glimmer3; putative YP_002736908.1 identified by Glimmer3; putative YP_002736909.1 identified by Glimmer3; putative YP_002736914.1 identified by Glimmer3; putative YP_002736916.1 identified by Glimmer3; putative YP_002736918.1 identified by match to protein family HMM PF00717; match to protein family HMM PF01381 YP_002736919.1 identified by Glimmer3; putative YP_002736920.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508 YP_002736921.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002736922.1 identified by match to protein family HMM PF01588 YP_002736923.1 identified by match to protein family HMM PF00085 YP_002736925.1 identified by match to protein family HMM PF01473 YP_002736927.1 identified by match to protein family HMM PF04397 YP_002736928.1 identified by match to protein family HMM PF01569 YP_002736930.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_002736931.1 identified by match to protein family HMM PF01289 YP_002736940.1 identified by Glimmer3; putative YP_002736943.1 identified by match to protein family HMM PF01473; match to protein family HMM PF01510 YP_002736944.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002736945.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_002736946.1 identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200 YP_002736947.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002736948.1 identified by match to protein family HMM PF00583 YP_002736949.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_002736951.1 identified by match to protein family HMM PF01381 YP_002736955.1 identified by match to protein family HMM PF05147 YP_002736958.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412 YP_002736959.1 identified by match to protein family HMM PF00082 YP_002736960.1 identified by match to protein family HMM PF07242 YP_002736961.1 identified by match to protein family HMM PF00005 YP_002736963.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_002736964.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_002736965.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_002736966.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_002736967.1 identified by match to protein family HMM PF01223 YP_002736969.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002736970.1 identified by match to protein family HMM TIGR02327 YP_002736972.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_002736973.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_002736974.1 catalyzes the formation of asparagine from aspartate and ammonia YP_002736975.1 identified by match to protein family HMM PF01027 YP_002736976.1 catalyzes the hydrolysis of acylphosphate YP_002736977.1 involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site YP_002736978.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493 YP_002736979.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_002736980.1 identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743 YP_002736981.1 identified by match to protein family HMM PF01336; match to protein family HMM PF01966 YP_002736982.1 identified by match to protein family HMM PF02646 YP_002736983.1 identified by match to protein family HMM PF04263; match to protein family HMM PF04265; match to protein family HMM TIGR01378 YP_002736984.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163 YP_002736985.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_002736986.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_002736987.1 identified by Glimmer3; putative YP_002736988.1 identified by match to protein family HMM PF00005 YP_002736989.1 identified by match to protein family HMM PF07242; match to protein family HMM TIGR01654 YP_002736990.1 identified by match to protein family HMM TIGR01653 YP_002736992.1 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334 YP_002736993.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_002736994.1 identified by match to protein family HMM PF00746; match to protein family HMM PF07564; match to protein family HMM TIGR01167 YP_002736995.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_002736996.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_002736998.1 identified by match to protein family HMM PF00582 YP_002736999.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002737000.1 identified by match to protein family HMM PF00710 YP_002737001.1 identified by Glimmer3; putative YP_002737002.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481 YP_002737003.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_002737004.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002737005.1 identified by match to protein family HMM PF01061 YP_002737006.1 identified by match to protein family HMM PF00005 YP_002737008.1 identified by Glimmer3; putative YP_002737010.1 Modulates Rho-dependent transcription termination YP_002737011.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_002737012.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif YP_002737013.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002737014.1 identified by match to protein family HMM PF00849 YP_002737015.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_002737016.1 identified by match to protein family HMM PF02687 YP_002737017.1 identified by match to protein family HMM PF01710 YP_002737018.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_002737019.1 identified by match to protein family HMM PF03600; match to protein family HMM PF07158 YP_002737021.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002737022.1 identified by match to protein family HMM PF00232 YP_002737023.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002737024.1 identified by match to protein family HMM PF02302 YP_002737025.1 identified by match to protein family HMM PF02255 YP_002737026.1 identified by match to protein family HMM PF00465 YP_002737028.1 identified by match to protein family HMM PF02493 YP_002737029.1 identified by match to protein family HMM PF01451 YP_002737030.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_002737031.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002737033.1 identified by match to protein family HMM PF00874; match to protein family HMM PF08279 YP_002737034.1 catalyzes the formation of D-xylulose 5-phosphate from L-ribulose 5-phosphate in the L-arabinose and L-ascorbate degradation pathways YP_002737035.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate YP_002737036.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization YP_002737037.1 identified by match to protein family HMM PF00359 YP_002737038.1 identified by match to protein family HMM PF02302 YP_002737039.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr YP_002737041.1 identified by match to protein family HMM PF01424 YP_002737042.1 identified by match to protein family HMM PF02096; match to protein family HMM TIGR03592 YP_002737043.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_002737045.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_002737047.1 identified by match to protein family HMM PF01209; match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002737051.1 identified by match to protein family HMM TIGR02532 YP_002737052.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002737053.1 identified by match to protein family HMM PF00482 YP_002737054.1 identified by match to protein family HMM PF00437 YP_002737055.1 identified by match to protein family HMM PF06279 YP_002737056.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002737057.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_002737058.1 identified by match to protein family HMM PF01757 YP_002737059.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_002737060.1 identified by match to protein family HMM PF06161 YP_002737061.1 catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline YP_002737062.1 identified by match to protein family HMM PF06993 YP_002737063.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01047 YP_002737064.1 identified by match to protein family HMM PF01476 YP_002737065.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002737066.1 identified by match to protein family HMM PF01554; match to protein family HMM PF03023; match to protein family HMM TIGR00797 YP_002737067.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_002737070.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002737071.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_002737073.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722 YP_002737074.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002737076.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002737077.1 This protein performs the mismatch recognition step during the DNA repair process YP_002737078.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863; match to protein family HMM TIGR01529 YP_002737079.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002737080.1 identified by match to protein family HMM PF01609 YP_002737081.1 identified by match to protein family HMM PF06172 YP_002737082.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002737083.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002737085.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_002737086.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_002737087.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002737088.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_002737090.1 identified by match to protein family HMM PF01381 YP_002737091.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_002737092.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_002737093.1 identified by match to protein family HMM PF01694 YP_002737094.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_002737095.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002737096.1 identified by match to protein family HMM PF00132; match to protein family HMM PF08503 YP_002737097.1 identified by match to protein family HMM PF00892 YP_002737098.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912 YP_002737099.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_002737100.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525 YP_002737102.1 identified by match to protein family HMM PF08241 YP_002737105.1 identified by Glimmer3; putative YP_002737106.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093 YP_002737107.1 amylomaltase; acts to release glucose from maltodextrins YP_002737108.1 identified by match to protein family HMM PF01547 YP_002737109.1 identified by match to protein family HMM PF00528; match to protein family HMM PF05154 YP_002737110.1 identified by match to protein family HMM PF00528 YP_002737112.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002737113.1 identified by Glimmer3; putative YP_002737114.1 identified by match to protein family HMM PF02588 YP_002737115.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002737118.1 identified by match to protein family HMM PF02517 YP_002737121.1 identified by match to protein family HMM PF01381 YP_002737123.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002737124.1 identified by match to protein family HMM PF07690 YP_002737125.1 identified by match to protein family HMM PF01609 YP_002737126.1 identified by match to protein family HMM TIGR01716 YP_002737128.1 identified by match to protein family HMM PF01883 YP_002737129.1 identified by Glimmer3; putative YP_002737130.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_002737131.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002737132.1 identified by match to protein family HMM PF00456 YP_002737133.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr YP_002737134.1 identified by match to protein family HMM PF02302 YP_002737135.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874 YP_002737136.1 identified by match to protein family HMM PF01145 YP_002737138.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_002737139.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_002737140.1 identified by match to protein family HMM PF01473 YP_002737145.1 identified by Glimmer3; putative YP_002737146.1 identified by match to protein family HMM PF00728 YP_002737147.1 identified by match to protein family HMM PF00480 YP_002737148.1 identified by match to protein family HMM PF01074; match to protein family HMM PF07748 YP_002737149.1 identified by match to protein family HMM PF06824 YP_002737150.1 identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180 YP_002737152.1 catalyzes the degradation of arginine to citruline and ammonia YP_002737153.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway YP_002737154.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_002737155.1 identified by match to protein family HMM PF03606 YP_002737156.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887 YP_002737159.1 identified by match to protein family HMM PF04650; match to protein family HMM TIGR01168 YP_002737161.1 identified by match to protein family HMM PF01145 YP_002737162.1 identified by match to protein family HMM PF00465 YP_002737163.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose YP_002737164.1 identified by match to protein family HMM PF00754; match to protein family HMM PF08306; match to protein family HMM PF08307 YP_002737166.1 identified by match to protein family HMM PF03613 YP_002737167.1 identified by match to protein family HMM PF03609 YP_002737168.1 identified by match to protein family HMM PF03830 YP_002737169.1 identified by match to protein family HMM PF03610 YP_002737170.1 identified by match to protein family HMM PF05025 YP_002737171.1 catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate YP_002737172.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_002737173.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002737174.1 identified by match to protein family HMM PF01297; match to protein family HMM PF09223 YP_002737175.1 identified by match to protein family HMM PF00950 YP_002737176.1 identified by match to protein family HMM PF00005 YP_002737177.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01047; match to protein family HMM PF01325; match to protein family HMM PF01978; match to protein family HMM PF08279 YP_002737179.1 identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918 YP_002737181.1 D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid YP_002737182.1 identified by match to protein family HMM PF03062 YP_002737183.1 transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid YP_002737186.1 identified by match to protein family HMM PF00078; match to protein family HMM PF08388 YP_002737188.1 identified by Glimmer3; putative YP_002737189.1 identified by Glimmer3; putative YP_002737190.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_002737191.1 identified by match to protein family HMM PF01266 YP_002737192.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_002737193.1 identified by match to protein family HMM PF05043 YP_002737194.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_002737195.1 identified by match to protein family HMM PF00724; match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_002737196.1 identified by match to protein family HMM PF01473 YP_002737197.1 identified by match to protein family HMM PF04140 YP_002737198.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002737199.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002737200.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_002737201.1 identified by match to protein family HMM PF05848 YP_002737202.1 identified by match to protein family HMM PF00005 YP_002737203.1 identified by match to protein family HMM PF09084 YP_002737204.1 identified by match to protein family HMM PF00528 YP_002737206.1 identified by match to protein family HMM PF01473; match to protein family HMM PF05257; match to protein family HMM PF08460 YP_002737207.1 identified by match to protein family HMM PF06257 YP_002737208.1 unwinds double stranded DNA YP_002737209.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_002737210.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_002737211.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_002737213.1 identified by match to protein family HMM PF00271; match to protein family HMM PF04851 YP_002737214.1 identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257 YP_002737215.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_002737216.1 identified by match to protein family HMM PF03050 YP_002737218.1 identified by match to protein family HMM PF05717 YP_002737219.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_002737220.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_002737221.1 identified by match to protein family HMM PF05257 YP_002737222.1 identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426 YP_002737223.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_002737224.1 identified by match to protein family HMM PF02361 YP_002737225.1 with CbiNQ forms the ABC transporter for cobalt import; Streptococcus has two adjacent copies of this gene YP_002737226.1 with CbiNQ forms the ABC transporter for cobalt import; Streptococcus has two adjacent copies of this gene YP_002737227.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_002737229.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_002737230.1 identified by match to protein family HMM PF05193 YP_002737231.1 identified by match to protein family HMM TIGR02988 YP_002737232.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_002737233.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_002737234.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002737235.1 identified by match to protein family HMM PF00005 YP_002737240.1 identified by match to protein family HMM PF00440 YP_002737241.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002737242.1 identified by match to protein family HMM PF02518 YP_002737243.1 identified by match to protein family HMM PF03047 YP_002737244.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_002737245.1 identified by match to protein family HMM PF00089 YP_002737246.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180