-- dump date 20120504_163248 -- class Genbank::CDS -- table cds_note -- id note YP_003485814.1 cluster 0306 with SCAB91051 YP_003485820.1 cluster 0312 with SCAB90991 YP_003485823.1 cluster 0315 with SCAB90961; no significant db matches YP_003485824.1 cluster 0316 with SCAB90951 YP_003485825.1 cluster 0317 with SCAB90941 YP_003485847.1 maybe missing stop codon, overlaps see SCAB0371 IS transposase YP_003485857.1 similarity to S. avermitilis hypothetical protein breaks off beyond codon 36 YP_003485870.1 no db matches YP_003485872.1 significant matches only to Nterminal section of cds YP_003485878.1 coiled-coil region aa23-52; overlaps see SCAB0691 IS transposase YP_003485883.1 no significant db matches YP_003485889.1 PAS domain may indicate role in signal detection YP_003485893.1 no db matches YP_003485898.1 no significant db matches; TTA-Leu codon(s) 148 may indicate regulation by BldA YP_003485903.1 no significant db matches YP_003485904.1 overlaps see SCAB0991 IS transposase YP_003485915.1 no significant db matches YP_003485923.1 no db matches YP_003485924.1 product inferred from PF03796 ATP-binding function; no full-length matches in db YP_003485927.1 contains PF01839 FG-GAP repeats see also SCAB3201, SCAB58141 YP_003485934.1 many more streptomycete homologs YP_003485935.1 TTA-Leu codon(s) 153 may indicate regulation by BldA YP_003485936.1 cluster 0386 with SCAB77921; TTA-Leu codon(s) 222 may indicate regulation by BldA YP_003485940.1 maybe involved in secondary metabolite NRPS YP_003485941.1 maybe involved in secondary metabolite NRPS YP_003485947.1 no significant db matches YP_003485952.1 may have class III aminotransferase activity from domain match; similar architecture to Caulobacter Q0M3P5 (36% aa_id) YP_003485953.1 no significant db matches, may be related to gene cluster SCAB1381-SCAB1481 YP_003485954.1 some similar proteins are annotated as phosphopantetheinyl transferases, )BAF92600, EDP57114) but no conserved domain found; may be related to gene cluster SCAB1381-1481 YP_003485973.1 no db matches YP_003485993.1 nearby genes for phenol catabolism SCAB2071, SCAB2091, SCAB2101 YP_003485996.1 E. coli mhp operon inv in phenol degradation; annotation transferred from E. coli YP_003485999.1 annotation transferred from E. coli YP_003486001.1 no significant db matches YP_003486003.1 annotation transferred from E. coli YP_003486005.1 this operon in E. coli encodes a pathway for catabolism of aromatic acids; annotation transferred from E. coli YP_003486007.1 annotation transferred from E. coli YP_003486009.1 annotation transferred from E. coli; TTA-Leu codon(s) 276 may indicate regulation by BldA YP_003486012.1 no significant db matches; TTA-Leu codon(s) 30, 134 may indicate regulation by BldA YP_003486022.1 no signficant db matches YP_003486025.1 no significant db matches YP_003486036.1 no db matches YP_003486047.1 no significant db matches YP_003486055.1 cluster 0591 with SCAB28431 YP_003486056.1 cluster 0594 with SCAB28441 YP_003486057.1 no significant db matches YP_003486059.1 no db matches YP_003486070.1 no significant db matches YP_003486072.1 no significant db matches YP_003486074.1 TTA-Leu codon(s) 9 may indicate regulation by BldA YP_003486075.1 TTA-Leu codon(s) 56 may indicate regulation by BldA YP_003486076.1 no significant db matches YP_003486089.1 no db matches YP_003486098.1 no db matches YP_003486100.1 contains PF01839 FG-GAP repeats see also SCAB1291, SCAB58141; TTA-Leu codon(s) 19 may indicate regulation by BldA YP_003486102.1 AMP-binding and pcp YP_003486109.1 cluster 0135 collects two pairs: SCAB3291 and SCAB3301, SCAB62911 and SCAB62921 YP_003486110.1 cluster 0135 collects two pairs: SCAB3291 and SCAB3301, SCAB62911 and SCAB62921 YP_003486115.1 TTA-Leu codon(s) 8 may indicate regulation by BldA YP_003486117.1 cluster 0025 8: SCAB3371, SCAB4481, SCAB7601, SCAB11701, SCAB20281, SCAB40511, SCAB68181 YP_003486122.1 no significant db matches YP_003486126.1 no significant db matches YP_003486129.1 similar proteins suggested to inhibit beta-lactamase YP_003486136.1 no significant db matches YP_003486141.1 TTA-Leu codon(s) 21 may indicate regulation by BldA YP_003486151.1 no significant db matches YP_003486153.1 no significant db matches YP_003486189.1 PAS domain may indicate role in signal detection YP_003486199.1 no significant db matches YP_003486203.1 no significant db matches YP_003486207.1 no significant db matches YP_003486222.1 cluster 0025 8: SCAB3371, SCAB4481, SCAB7601, SCAB11701, SCAB20281, SCAB40511, SCAB68181 YP_003486235.1 TTA-Leu codon(s) 22 may indicate regulation by BldA YP_003486238.1 no significant db matches YP_003486240.1 partial conservon YP_003486245.1 no significant db matches YP_003486247.1 cluster 0095 with SCAB10521, SCAB69701, SCAB83281 YP_003486249.1 no significant db matches; TTA-Leu codon(s) 13 may indicate regulation by BldA YP_003486261.1 no significant db matches YP_003486270.1 no significant db matches YP_003486273.1 no significant db matches; TTA-Leu codon(s) 21 may indicate regulation by BldA YP_003486275.1 cluster 0734 with SCAB82161 YP_003486277.1 no significant db matches YP_003486279.1 no significant db matches YP_003486284.1 no significant db matches YP_003486285.1 no significant db matches YP_003486289.1 no significant db matches YP_003486290.1 no significant db matches YP_003486308.1 no significant db matches YP_003486321.1 no significant db matches YP_003486329.1 no significant db matches YP_003486339.1 no significant db matches YP_003486340.1 no significant db matches YP_003486348.1 cluster 0757 with SCAB54651 YP_003486354.1 TTA-Leu codon(s) 95 may indicate regulation by BldA YP_003486365.1 no significant db matches YP_003486366.1 TTA-Leu codon(s) 30 may indicate regulation by BldA YP_003486382.1 no significant db matches YP_003486395.1 no significant db matches YP_003486432.1 cluster 0554 with SCAB6701 YP_003486436.1 no significant db matches YP_003486437.1 PF00353 calcium binding repeats but no sign of PF02382 or PF08339 to support hemolysin-like function YP_003486442.1 no db matches YP_003486463.1 cluster 0739 with SCAB51501 YP_003486486.1 cluster 0486 with SCAB21201 YP_003486497.1 no significant db matches YP_003486504.1 no significant db matches YP_003486511.1 no significant db matches YP_003486513.1 no significant db matches YP_003486518.1 cluster 0025 8: SCAB3371, SCAB4481, SCAB7601, SCAB11701, SCAB20281, SCAB40511, SCAB68181 YP_003486550.1 no significant db matches YP_003486553.1 no db matches YP_003486596.1 TTA-Leu codon(s) 147 may indicate regulation by BldA YP_003486666.1 TTA-Leu codon(s) 127 may indicate regulation by BldA YP_003486700.1 TTA-Leu codon(s) 64 may indicate regulation by BldA YP_003486711.1 no significant db matches YP_003486737.1 [decarboxylating] YP_003486753.1 PF03068 unusual in bacteria YP_003486755.1 TTA-Leu codon(s) 103 may indicate regulation by BldA YP_003486757.1 no significant db matches YP_003486758.1 no significant db matches YP_003486764.1 TTA-Leu codon(s) 238 may indicate regulation by BldA YP_003486795.1 cluster 0095 with SCAB4751, SCAB69701, SCAB83281 gap1/2 YP_003486808.1 no significant db matches YP_003486822.1 no significant db matches YP_003486831.1 doubtful cds; no db matches YP_003486842.1 no significant db matches YP_003486881.1 no full-length matches YP_003486888.1 PAS domain may indicate role in signal detection YP_003486895.1 sortase YP_003486908.1 cluster 0025 8: SCAB3371, SCAB4481, SCAB7601, SCAB11701, SCAB20281, SCAB40511, SCAB68181 YP_003486929.1 no signficant db matches YP_003486953.1 cluster 0360 with SCAB31431 YP_003486955.1 cluster 0361 with SCAB29481 YP_003486960.1 no significant db matches; TTA-Leu codon(s) 8 may indicate regulation by BldA YP_003486964.1 TTA-Leu codon(s) 37 may indicate regulation by BldA YP_003486966.1 no db matches YP_003486976.1 cluster 0362 with SCAB25061 YP_003486986.1 no significant db matches YP_003486999.1 maybe involved in conservon SCAB12711-SCAB12741 YP_003487024.1 see SAV annotation - squalene/hopene gene cluster YP_003487045.1 no significant db matches YP_003487057.1 TTA-Leu codon(s) 365 may indicate regulation by BldA YP_003487078.1 no significant db matches YP_003487082.1 TTA-Leu codon(s) 9 may indicate regulation by BldA YP_003487101.1 no significant db matches YP_003487104.1 no significant db matches YP_003487106.1 no significant db matches YP_003487107.1 no significant db matches YP_003487109.1 no db matches YP_003487111.1 no db matches YP_003487114.1 no db matches YP_003487123.1 no significant db matches YP_003487125.1 no significant db matches YP_003487130.1 no full-length matches YP_003487146.1 pseudo: fragment YP_003487148.1 cluster 0392 with SCAB21931 YP_003487166.1 no significant db matches YP_003487175.1 no db matches YP_003487176.1 no significant db matches YP_003487177.1 no significant db matches YP_003487179.1 TTA-Leu codon(s) 95 may indicate regulation by BldA YP_003487180.1 TTA-Leu codon(s) 330 may indicate regulation by BldA YP_003487187.1 TTA-Leu codon(s) 235 may indicate regulation by BldA YP_003487194.1 cluster 0398 with SCAB15071 YP_003487203.1 no significant db matches YP_003487207.1 no significant db matches YP_003487210.1 annotation transferred from E. coli YP_003487217.1 cluster 0398 with SCAB14831 YP_003487237.1 no significant db matches YP_003487248.1 TTA-Leu codon(s) 110 may indicate regulation by BldA YP_003487275.1 some similarity to cysteine-binding protein FliY from S. typhimurium YP_003487283.1 TTA-Leu codon(s) 52 may indicate regulation by BldA YP_003487288.1 no significant db matches YP_003487308.1 TTA-Leu codon(s) 150 may indicate regulation by BldA YP_003487312.1 longer than usual sigma factor YP_003487316.1 no full-length matches YP_003487317.1 no full-length matches YP_003487321.1 no significant matches; no full-length matches YP_003487328.1 no significant db matches; TTA-Leu codon(s) 56 may indicate regulation by BldA YP_003487329.1 no significant db matches YP_003487335.1 no significant db matches YP_003487336.1 no full-length matches; TTA-Leu codon(s) 33 may indicate regulation by BldA YP_003487340.1 maybe part of R-M system; cluster 0425 with SCAB54351 YP_003487343.1 cluster 0426 with SCAB57271 YP_003487344.1 no db matches YP_003487345.1 no significant db matches YP_003487350.1 no significant db matches YP_003487351.1 no significant db matches YP_003487365.1 cluster 0429 with SCAB17871 YP_003487371.1 TTA-Leu codon(s) 17 may indicate regulation by BldA YP_003487386.1 TTA-Leu codon(s) 59 may indicate regulation by BldA YP_003487442.1 no significant db matches YP_003487470.1 cluster 0445 with SCAB27291 YP_003487477.1 no significant db matches YP_003487482.1 cluster 0429 with SCAB16661 YP_003487486.1 N terminal extent by first start before expressed tryptic fragment site; TTA-Leu codon(s) 7 may indicate regulation by BldA YP_003487490.1 cluster 0447 with SCAB21871; TTA-Leu codon(s) 4 may indicate regulation by BldA YP_003487516.1 TTA-Leu codon(s) 101 may indicate regulation by BldA YP_003487519.1 possibly regulatory domain subunit for ion channel from PF00248 YP_003487526.1 TTA-Leu codon(s) 58 may indicate regulation by BldA YP_003487529.1 NIS system, nearby genes SCAB18311, SCAB18321 for AMP catabolism YP_003487530.1 NIS system, nearby genes SCAB18311, SCAB18321 for AMP catabolism YP_003487531.1 NIS system, nearby genes SCAB18311, SCAB18321 for AMP catabolism YP_003487532.1 NIS system, nearby genes SCAB18311, SCAB18321 for AMP catabolism YP_003487533.1 NIS system, nearby genes SCAB18311, SCAB18321 for AMP catabolism YP_003487534.1 NIS system, nearby genes SCAB18311, SCAB18321 for AMP catabolism YP_003487569.1 no full-length matches in db YP_003487587.1 TTA-Leu codon(s) 241 may indicate regulation by BldA YP_003487588.1 TTA-Leu codon(s) 50 may indicate regulation by BldA YP_003487590.1 no significant db matches YP_003487608.1 no significant db matches YP_003487633.1 annotation transferred from E. coli YP_003487638.1 no full-length matches YP_003487701.1 nearest only ~30% similar protein, SCO5672 YP_003487705.1 conservon YP_003487709.1 cluster 0025 8: SCAB3371, SCAB4481, SCAB7601, SCAB11701, SCAB20281, SCAB40511, SCAB68181 YP_003487719.1 TTA-Leu codon(s) 13 may indicate regulation by BldA YP_003487722.1 TTA-Leu codon(s) 123 may indicate regulation by BldA YP_003487738.1 delete: correlation score 51.1 YP_003487747.1 matches include lipoproteins in S. coelicolor and S. avermitilis YP_003487750.1 TTA-Leu codon(s) 5 may indicate regulation by BldA YP_003487776.1 cluster 0481 with SCAB74511 YP_003487778.1 cluster 0482 with SCAB43221 YP_003487785.1 TTA-Leu codon(s) 34 may indicate regulation by BldA YP_003487797.1 cluster 0486 with SCAB7251 YP_003487800.1 cluster 0487 with SCAB65921 YP_003487801.1 cluster 0488 with SCAB65911 YP_003487802.1 cluster 0489 with SCAB65771 YP_003487810.1 cluster 0490 with SCAB26661 YP_003487813.1 cluster 0492 with SCAB57031 YP_003487816.1 cluster 0493 with SCAB53771 YP_003487830.1 TTA-Leu codon(s) 227 may indicate regulation by BldA YP_003487835.1 cluster 0494 with SCAB48001 YP_003487836.1 cluster 0495 with SCAB73851 YP_003487840.1 cluster 0496 with SCAB69231 YP_003487850.1 cluster 0498 with SCAB32251 YP_003487851.1 cluster 0499 with SCAB32261 YP_003487852.1 cluster 0500 with SCAB32271 YP_003487857.1 cluster 0501 with SCAB32321 YP_003487858.1 cluster 0502 with SCAB32331 YP_003487859.1 doubtful CDS YP_003487860.1 cluster 0503 with SCAB32341; contains a pair of PF03771 (DUF) see also SCAB22011, SCAB21991, SCAB22431, SCAB22451, SCAB22471, SCAB22511, SCAB22521, SCAB22571 YP_003487862.1 cluster 0504 with SCAB32361 YP_003487864.1 cluster 0447 with SCAB17951; TTA-Leu codon(s) 83 may indicate regulation by BldA YP_003487875.1 cluster 0505 with SCAB32561 YP_003487876.1 cluster 0506 with SCAB32571 which might be frameshifted fragment diverged from SCAB21991; contains a pair of PF03771 (DUF) see also SCAB21831, SCAB22011, SCAB22431, SCAB22451, SCAB22471 YP_003487877.1 cluster 0507 with SCAB32581 YP_003487878.1 cluster 0508 with SCAB32591; contains a pair of PF03771 (DUF) see also SCAB21831, SCAB21991, SCAB22431, SCAB22451, SCAB22471 YP_003487879.1 cluster 0509 with SCAB32601 YP_003487880.1 cluster 0510 with SCAB32611 YP_003487882.1 cluster 0511 with SCAB32631 YP_003487884.1 cluster 0513 with SCAB32651 YP_003487885.1 cluster 0514 with SCAB32661 YP_003487886.1 cluster 0515 with SCAB32671 YP_003487887.1 cluster 0516 with SCAB32681 YP_003487888.1 cluster 0517 with SCAB32691 YP_003487891.1 cluster 0520 with SCAB32731 YP_003487892.1 cluster 0521 with SCAB32741 YP_003487893.1 cluster 0522 with SCAB32751 YP_003487894.1 cluster 0523 with SCAB32761 YP_003487895.1 no significant db matches YP_003487896.1 similar to SCAB32771 YP_003487901.1 cluster 0209 with SCAB32831 and SCAB49211 YP_003487902.1 no significant db matches YP_003487903.1 similar to SCAB32851 YP_003487904.1 cluster 0527 with SCAB32861 YP_003487906.1 cluster 0528 with SCAB32931 YP_003487909.1 cluster 0530 with SCAB32991 YP_003487911.1 cluster 0531 with SCAB33031 YP_003487912.1 cluster 0532 with SCAB33041 YP_003487915.1 cluster 0534 with SCAB33061 YP_003487917.1 TTA-Leu codon(s) 160 may indicate regulation by BldA YP_003487918.1 cluster 0536 with SCAB33091 YP_003487919.1 contains a pair of PF03771 (DUF) see also SCAB21831, SCAB22011, SCAB21991, SCAB22451, SCAB22471, SCAB22511, SCAB22521, SCAB22571 YP_003487920.1 cluster 0538 with SCAB33111; no db matches YP_003487921.1 contains a pair of PF03771 (DUF) see also SCAB21831, SCAB22011, SCAB21991, SCAB22431, SCAB22471, SCAB22511, SCAB22521, SCAB22571 YP_003487922.1 cluster 0540 with SCAB33131 YP_003487923.1 contains a pair of PF03771 (DUF) see also SCAB21831, SCAB22011, SCAB21991, SCAB22431, SCAB22451, SCAB22511, SCAB22521, SCAB22571 YP_003487924.1 cluster 0541 with SCAB33161 YP_003487927.1 contains a pair of PF03771 (DUF) see also SCAB21831, SCAB22011, SCAB21991, SCAB22431, SCAB22451, SCAB22471, SCAB22521, SCAB22571 YP_003487928.1 contains a pair of PF03771 (DUF) see also SCAB21831, SCAB22011, SCAB21991, SCAB22431, SCAB22451, SCAB22471, SCAB22511, SCAB22571 YP_003487930.1 cluster 0543 with SCAB33191 YP_003487932.1 cluster 0545 with SCAB33211 YP_003487933.1 cluster 0546 with SCAB33281; contains a pair of PF03771 (DUF) see also SCAB21831, SCAB22011, SCAB21991, SCAB22431, SCAB22451, SCAB22471, SCAB22511, SCAB22521 YP_003487939.1 no signficant db matches YP_003487940.1 cluster 0547 with SCAB33431 YP_003487941.1 TTA-Leu codon(s) 92 may indicate regulation by BldA YP_003487979.1 cluster 0552 with SCAB28471 YP_003487998.1 TTA-Leu codon(s) 74 may indicate regulation by BldA YP_003488031.1 cluster 0555 with SCAB88941 YP_003488045.1 1332944; 11985710; 8387146; overlaps, seems to be common pattern see also SCAB0371, SCAB0691, SCAB0991, SCAB42901, SCAB90821; TTA-Leu codon(s) 4 may indicate regulation by BldA YP_003488046.1 overlaps see SCAB23721 IS transposase YP_003488054.1 cluster 0025 8: SCAB3371, SCAB4481, SCAB7601, SCAB11701, SCAB20281, SCAB40511, SCAB68181 YP_003488075.1 no db matches YP_003488087.1 cluster 0562 with SCAB53091 YP_003488135.1 NIS system YP_003488136.1 NIS system YP_003488137.1 NIS system YP_003488139.1 cluster 0566 with SCAB50701; NIS system YP_003488140.1 NIS system YP_003488141.1 NIS system YP_003488142.1 cluster 0567 with SCAB74961; NIS system YP_003488143.1 NIS system YP_003488146.1 TTA-Leu codon(s) 10 may indicate regulation by BldA YP_003488149.1 cluster 0568 with SCAB25101 YP_003488156.1 cluster 0569 with SCAB89981 YP_003488157.1 cluster 0570 with SCAB89991 YP_003488169.1 contains two repeat regions YP_003488172.1 cluster 0362 with SCAB12441 YP_003488176.1 cluster 0568 with SCAB24811 YP_003488180.1 strong matches to receiver domain of two component system response regulator, but no DNA binding domain; cluster 0571 with SCAB61481 YP_003488182.1 cluster 0572 with SCAB61501 YP_003488185.1 cluster 0574 with SCAB70181 YP_003488186.1 high degree of sequence identity compared to SAV over much of the protein with large in/del YP_003488219.1 TTA-Leu codon(s) 14 may indicate regulation by BldA YP_003488243.1 cluster 0577 with SCAB61641 YP_003488246.1 cluster 0578 with SCAB26811 YP_003488275.1 cluster 0579 with SCAB26131 YP_003488289.1 cluster 0581 with SCAB61761 YP_003488290.1 cluster 0582 with SCAB84991 YP_003488317.1 cluster 0583 with SCAB79801 YP_003488329.1 cluster 0490 with SCAB21321; glutamyl-trna synthetase (ec 6.1.1.17) (glutamate--trna ligase) (glurs) YP_003488343.1 cluster 0578 with SCAB25831 YP_003488352.1 cluster 0586 with SCAB78391 YP_003488358.1 cluster 0588 with SCAB57891 YP_003488365.1 cluster 0589 with SCAB27151 YP_003488376.1 cluster 0589 with SCAB27031 YP_003488386.1 cluster 0590 with SCAB83271 YP_003488390.1 cluster 0445 with SCAB17751 YP_003488392.1 cluster 0592 with SCAB79831 YP_003488393.1 cluster 0593 with SCAB33341 YP_003488406.1 TTA-Leu codon(s) 14 may indicate regulation by BldA YP_003488425.1 High GC compared to background. Bias in amino acids towards Ala, Pro, fastA hits primarily from hydrophilic composition YP_003488462.1 cluster 0603 with SCAB43561 YP_003488465.1 cluster 0604 with SCAB80081 YP_003488466.1 TTA-Leu codon(s) 37 may indicate regulation by BldA YP_003488469.1 cluster 0605 with SCAB28171 YP_003488475.1 cluster 0605 with SCAB28111; TTA-Leu codon(s) 258 may indicate regulation by BldA YP_003488482.1 cluster 0606 with SCAB68861 YP_003488501.1 cluster 0591 with SCAB2731 YP_003488502.1 cluster 0594 with SCAB2741 YP_003488505.1 cluster 0552 with SCAB23051 YP_003488547.1 cluster 0609 with SCAB55691 YP_003488559.1 TTA-Leu codon(s) 53 may indicate regulation by BldA YP_003488568.1 no full-length matches YP_003488584.1 cluster 0485 with SCAB21171 YP_003488599.1 TTA-Leu codon(s) 86 may indicate regulation by BldA YP_003488609.1 cluster 0361 with SCAB12181 YP_003488612.1 cluster 0613 with SCAB69561 YP_003488617.1 cluster 0614 with SCAB39441 YP_003488624.1 cluster 0616 with SCAB66731 YP_003488630.1 related to conservon YP_003488648.1 cluster 0617 with SCAB55931 YP_003488669.1 cluster 0618 with SCAB68151 YP_003488692.1 cluster 0623 with SCAB65421 YP_003488694.1 doubtful cds; no full-length matches YP_003488728.1 doubtful CDS YP_003488735.1 cluster 0625 wtih SCAB82771 YP_003488776.1 TTA-Leu codon(s) 12 may indicate regulation by BldA YP_003488802.1 cluster 0360 with SCAB12151 YP_003488816.1 doubtful CDS YP_003488836.1 strong match to S. turgidiscabies pathogenicity island: no matches in uniprot db; frame plot is wrong -doubtful CDS YP_003488843.1 doubtful CDS YP_003488849.1 lantibiotics biosynthesis YP_003488850.1 lantibiotics biosynthesis; TTA-Leu codon(s) 53 may indicate regulation by BldA YP_003488851.1 lantibiotics biosynthesis YP_003488852.1 lantibiotics biosynthesis YP_003488853.1 lantibiotics biosynthesis YP_003488855.1 lantibiotics biosynthesis YP_003488856.1 lantibiotics biosynthesis YP_003488857.1 lantibiotic biosynthesis YP_003488858.1 lantibiotics biosynthesis; TTA-Leu codon(s) 221 may indicate regulation by BldA YP_003488859.1 lantibiotics biosynthesis YP_003488868.1 doubtful CDS YP_003488871.1 TTA-Leu codon(s) 17, 60 may indicate regulation by BldA YP_003488878.1 cluster 0498 with SCAB21731 YP_003488879.1 cluster 0499 with SCAB21741 YP_003488881.1 no db matches YP_003488885.1 cluster 0501 with SCAB21801 YP_003488886.1 cluster 0502 with SCAB21811 YP_003488887.1 cluster 0503 with SCAB21831 YP_003488889.1 cluster 0504 with SCAB21851 YP_003488891.1 TTA-Leu codon(s) 326 may indicate regulation by BldA YP_003488893.1 no significant db matches; TTA-Leu codon(s) 185 may indicate regulation by BldA YP_003488896.1 doubtful CDS YP_003488903.1 TTA-Leu codon(s) 241 may indicate regulation by BldA YP_003488904.1 TTA-Leu codon(s) 378 may indicate regulation by BldA YP_003488908.1 cluster 0505 with SCAB21981 YP_003488909.1 cluster 0507 with SCAB22001 YP_003488910.1 cluster 0508 with SCAB22011 YP_003488911.1 cluster 0509 with SCAB22021 YP_003488912.1 cluster 0510 with SCAB22031 YP_003488914.1 cluster 0511 with SCAB22051 YP_003488916.1 cluster 0513 with SCAB22071 YP_003488917.1 cluster 0514 with SCAB22081 YP_003488918.1 cluster 0515 with SCAB22091 YP_003488919.1 cluster 0516 with SCAB22101 YP_003488920.1 cluster 0517 with SCAB22111 YP_003488921.1 cluster 0518 with SCAB32701 YP_003488923.1 cluster 0519 with SCAB22141 YP_003488924.1 cluster 0520 with SCAB22151 YP_003488925.1 cluster 0521 with SCAB22161 YP_003488926.1 cluster 0522 with SCAB22171 YP_003488927.1 cluster 0523 with SCAB22181 YP_003488928.1 similar to SCAB22201 YP_003488933.1 no significant db matches YP_003488934.1 cluster 0209 with SCAB22251 and SCAB49211 YP_003488935.1 no significant db matches YP_003488936.1 similar to SCAB22271 YP_003488937.1 cluster 0527 with SCAB22281 YP_003488943.1 cluster 0528 with SCAB22301 YP_003488948.1 no significant db matches YP_003488949.1 cluster 0530 with SCAB22331 YP_003488952.1 cluster 0531 with SCAB22351 YP_003488953.1 cluster 0532 with SCAB22361 YP_003488955.1 cluster 0534 with SCAB22391 YP_003488958.1 cluster 0536 with SCAB22421 YP_003488960.1 cluster 0538 with SCAB22441 YP_003488962.1 cluster 0540 with SCAB22461 YP_003488965.1 cluster 0541 with SCAB22481; TTA-Leu codon(s) 589 may indicate regulation by BldA YP_003488968.1 cluster 0543 with SCAB22541 YP_003488970.1 cluster 0545 with SCAB22561 YP_003488976.1 cluster 0546 with SCAB22571 YP_003488982.1 cluster 0593 with SCAB27321 YP_003488987.1 cluster 0627 with SCAB56171 YP_003488991.1 cluster 0547 with SCAB22641 YP_003489028.1 cluster 0628 with SCAB41161 YP_003489032.1 TTA-Leu codon(s) 274 may indicate regulation by BldA YP_003489036.1 proline rich YP_003489046.1 cluster 0630 with SCAB89921 YP_003489052.1 TTA-Leu codon(s) 67 may indicate regulation by BldA YP_003489153.1 cluster 0138: SCAB35111, SCAB57961, SCAB59871, SCAB87221; no Pfam: evidence for transposition inferred from 4 exact duplicates in genome; TTA-Leu codon(s) 3, 26 may indicate regulation by BldA YP_003489155.1 TTA-Leu codon(s) 58 may indicate regulation by BldA YP_003489205.1 TTA-Leu codon(s) 13 may indicate regulation by BldA YP_003489223.1 TTA-Leu codon(s) 203 may indicate regulation by BldA YP_003489500.1 TTA-Leu codon(s) 67 may indicate regulation by BldA YP_003489505.1 TTA-Leu codon(s) 82 may indicate regulation by BldA YP_003489508.1 TTA-Leu codon(s) 68 may indicate regulation by BldA YP_003489524.1 no full-length db matches YP_003489619.1 TTA-Leu codon(s) 150 may indicate regulation by BldA YP_003489644.1 TTA-Leu codon(s) 434 may indicate regulation by BldA YP_003489650.1 TTA-Leu codon(s) 561 may indicate regulation by BldA YP_003489651.1 TTA-Leu codon(s) 344 may indicate regulation by BldA YP_003489673.1 doubtful CDS YP_003489709.1 TTA-Leu codon(s) 6 may indicate regulation by BldA YP_003489719.1 TTA-Leu codon(s) 918 may indicate regulation by BldA YP_003489722.1 TTA-Leu codon(s) 223 may indicate regulation by BldA YP_003489734.1 TTA-Leu codon(s) 10 may indicate regulation by BldA YP_003489737.1 cluster 0628 with SCAB33801 YP_003489776.1 TTA-Leu codon(s) 368 may indicate regulation by BldA YP_003489839.1 TTA-Leu codon(s) 43 may indicate regulation by BldA YP_003489844.1 TTA-Leu codon(s) 111 may indicate regulation by BldA YP_003489903.1 probably pseudo: fragment. See also SCAB0401, SCAB14521, SCAB40521 YP_003489904.1 TTA-Leu codon(s) 107 may indicate regulation by BldA YP_003489905.1 TTA-Leu codon(s) 41 may indicate regulation by BldA YP_003489907.1 overlaps see SCAB42901 IS transposase YP_003489937.1 cluster 0482 with SCAB21001 YP_003489953.1 TTA-Leu codon(s) 86 may indicate regulation by BldA YP_003489954.1 PAS domain may indicate role in signal detection YP_003489966.1 cluster 0603 with SCAB28031 YP_003489972.1 doubtful cds YP_003489978.1 doubtful cds; TTA-Leu codon(s) 5 may indicate regulation by BldA YP_003489979.1 TTA-Leu codon(s) 4 may indicate regulation by BldA YP_003489993.1 TTA-Leu codon(s) 88 may indicate regulation by BldA YP_003489996.1 TTA-Leu codon(s) 15 may indicate regulation by BldA YP_003490038.1 no significant db matches YP_003490049.1 association with SCAB44411 suggests IS involvement, see also SCAB0161/0171, SCAB42801/SCAB42811 YP_003490060.1 PAS domain may indicate role in signal detection YP_003490072.1 TTA-Leu codon(s) 202 may indicate regulation by BldA YP_003490078.1 TTA-Leu codon(s) 401 may indicate regulation by BldA YP_003490098.1 pectate lyase maybe pathogenicity related YP_003490108.1 TTA-Leu codon(s) 540 may indicate regulation by BldA YP_003490109.1 cluster 0025 8: SCAB3371, SCAB4481, SCAB7601, SCAB11701, SCAB20281, SCAB40511, SCAB68181 YP_003490164.1 TTA-Leu codon(s) 179 may indicate regulation by BldA YP_003490225.1 TTA-Leu codon(s) 5, 89 may indicate regulation by BldA YP_003490238.1 TTA-Leu codon(s) 162 may indicate regulation by BldA YP_003490267.1 TTA-Leu codon(s) 125 may indicate regulation by BldA YP_003490302.1 contains hydrophilic region possibly for attachment YP_003490362.1 TTA-Leu codon(s) 70 may indicate regulation by BldA YP_003490366.1 only 76% aa-id to SCO, alignment shows in/dels YP_003490394.1 cluster 0494 with SCAB21571 YP_003490460.1 product from Pfam PF05713: no significant db matches YP_003490463.1 TTA-Leu codon(s) 24 may indicate regulation by BldA YP_003490466.1 TTA-Leu codon(s) 5 may indicate regulation by BldA YP_003490514.1 cluster 0209 with SCAB22251 and SCAB32831 YP_003490582.1 maybe pseudo: overlaps SCAB49911 but strong fasta matches to predicted proteins in other organisms YP_003490597.1 part of an alternative nonmevalonate pathway for terpenoid biosynthesis YP_003490598.1 part of an alternative nonmevalonate pathway for terpenoid biosynthesis YP_003490603.1 hydrophilic tail after membrane-span YP_003490609.1 pentapeptide repeats YP_003490657.1 cluster 0566 with SCAB24711 YP_003490662.1 IstB-like domain often associated with IS; 3 TMHs suggest membrane location; TTA-Leu codon(s) 57 may indicate regulation by BldA YP_003490678.1 hydrophilic N-term YP_003490698.1 conservon YP_003490699.1 conservon YP_003490718.1 see also SCAB58791 citA YP_003490721.1 PAS domain may indicate role in signal detection YP_003490724.1 codon 37 TTA-Leu (rare) indicates regulation by BldA; TTA-Leu codon(s) 37 may indicate regulation by BldA YP_003490731.1 cluster 0739 with SCAB7011 YP_003490741.1 cluster 0741 with SCAB90561 YP_003490745.1 no significant db matches YP_003490751.1 no significant db matches YP_003490762.1 Ala-rich N-term possibly export signal YP_003490764.1 no close matches in S. coelicolor or S. avermitilis YP_003490765.1 no significant db matches YP_003490779.1 no significant database matches YP_003490780.1 no significant db matches YP_003490786.1 no significant db matches YP_003490793.1 hydrophilic N-term YP_003490814.1 TTA-Leu codon(s) 353 may indicate regulation by BldA YP_003490838.1 doubtful CDS YP_003490880.1 TTA-Leu codon(s) 68 may indicate regulation by BldA YP_003490886.1 cluster 0562 with SCAB24121 YP_003490904.1 no significant db matches YP_003490907.1 possibly lipid transport from PF03176 YP_003490909.1 no significant db matches YP_003490916.1 N-terminal extended compared to db entries; contains Pro-rich tract codons 36-70 YP_003490921.1 no significant db matches YP_003490924.1 TTA-Leu codon(s) 6 may indicate regulation by BldA YP_003490957.1 cluster 0493 with SCAB21381 YP_003490958.1 doubtful CDS YP_003490966.1 possibly subunit of ATP transporter system YP_003490968.1 possibly subunit of ATP transporter system YP_003490969.1 possibly subunit of ATP transporter system YP_003490979.1 TTA-Leu codon(s) 15 may indicate regulation by BldA YP_003490982.1 catalyzes the s-adenosylmethionine monomethyl esterification of trans-aconitate? YP_003491009.1 maybe part of R-M system; cluster 0425 with SCAB16401 YP_003491037.1 cluster 0757 with SCAB5811 YP_003491053.1 doubtful CDS YP_003491111.1 nearest matches are extremophiles YP_003491115.1 see also SCAB55591, SCAB55601, SCAB55611 YP_003491120.1 TTA-Leu codon(s) 6 may indicate regulation by BldA YP_003491129.1 see also SCAB55451, SCAB55601, SCAB55611 YP_003491130.1 see also SCAB55451, SCAB55591, SCAB55611 YP_003491131.1 see also SCAB55451, SCAB55591, SCAB55601 YP_003491134.1 TTA-Leu codon(s) 20 may indicate regulation by BldA YP_003491140.1 contains repeat regions YP_003491144.1 TTA-Leu codon(s) 184 may indicate regulation by BldA YP_003491146.1 TTA-Leu codon(s) 69 may indicate regulation by BldA YP_003491160.1 cluster 0617 with SCAB29861 YP_003491182.1 no db matches YP_003491185.1 cluster 0627 with SCAB33391 YP_003491225.1 see also SCAB56721 YP_003491234.1 missing stop codon around codon 364? YP_003491239.1 see also SCAB56581 YP_003491247.1 see low complexity regions YP_003491270.1 TTA-Leu codon(s) 25 may indicate regulation by BldA YP_003491277.1 coiled coil aa 136..155 YP_003491285.1 possibly sortase YP_003491290.1 product annotation from ROK pfam PF00480; lacks PF08067 Nterm DNA-binding domain YP_003491293.1 Cterm h-phobic region lacks LAxTG sortase signal YP_003491295.1 cluster 0426 with SCAB16431 YP_003491296.1 CDS contains Kelch repeats YP_003491298.1 no significant db matches YP_003491299.1 no significant db matches YP_003491300.1 no significant db matches YP_003491302.1 contains GC spike, repeat regions, hydrophobic and hydrophilic regions YP_003491328.1 cluster 0773 with SCAB77671 YP_003491354.1 cluster 0588 with SCAB26961 YP_003491361.1 cluster 0138: SCAB35111, SCAB57961, SCAB59871, SCAB87221; no Pfam on first pass: evidence for transposition inferred from duplicates in genome and subthreshold Pfams; TTA-Leu codon(s) 13, 36 may indicate regulation by BldA YP_003491372.1 Ala-rich YP_003491377.1 contains PF01839 FG-GAP repeats see also SCAB1291, SCAB3201 YP_003491383.1 no significant db matches YP_003491398.1 TTA-Leu codon(s) 45 may indicate regulation by BldA YP_003491405.1 no significant db matches YP_003491406.1 no significant db matches YP_003491414.1 with SCAB58531 YP_003491415.1 with SCAB58511 YP_003491423.1 Pro/Ala rich; contains repeated aa sequence: codons 116-159/163-205/225-271 and codons 188-234/264-310 YP_003491425.1 no significant db matches YP_003491488.1 sortase signal LAETG YP_003491498.1 TTA-Leu codon(s) 171 may indicate regulation by BldA YP_003491506.1 has ROK Pfam but lacks N-term ROK HTH domain common to ROK family repressors YP_003491543.1 cluster 0138: SCAB35111, SCAB57961, SCAB59871, SCAB87221; no Pfam: evidence for transposition inferred from 4 exact duplicates in genome; TTA-Leu codon(s) 13, 36 may indicate regulation by BldA YP_003491555.1 no db matches YP_003491601.1 doubtful cds from GC frame plot; Pro/Ala rich YP_003491602.1 no db matches YP_003491603.1 no significant db matches YP_003491605.1 no significant db matches YP_003491606.1 no significant db matches YP_003491609.1 no significant db matches YP_003491610.1 no significant db matches YP_003491612.1 no significant db matches YP_003491616.1 no significant db matches YP_003491617.1 no significant db matches YP_003491618.1 no db matches YP_003491619.1 no significant db matches YP_003491622.1 no significant db matches YP_003491623.1 no significant db matches YP_003491624.1 no significant db matches YP_003491626.1 no significant db matches YP_003491627.1 no significant db matches YP_003491628.1 no significant db matches YP_003491629.1 no db matches YP_003491632.1 no significant db matches YP_003491633.1 no significant db matches YP_003491635.1 no db matches; prob transduced in prophage YP_003491636.1 no significant db matches; prob transduced in prophage YP_003491637.1 no significant db matches; prob transduced in prophage YP_003491638.1 no significant db matches; prob transduced in prophage YP_003491639.1 no significant db matches; prob transduced in prophage YP_003491640.1 no significant db matches; prob transduced in prophage YP_003491641.1 no significant db matches; prob transduced in prophage YP_003491645.1 no db matches: possibly transduced in prophage YP_003491646.1 no significant db matches; poss transduced in prophage YP_003491648.1 no signficant db matches; poss transduced in prophage YP_003491649.1 no significant db matches; poss transduced YP_003491650.1 no signficant db matches; poss transduced YP_003491651.1 significant db matches confined to aa100..190 YP_003491652.1 no significant db matches; poss transduced YP_003491653.1 no signficant db matches; poss transduced YP_003491654.1 no signficant db matches; poss transduced YP_003491656.1 no significant db matches YP_003491658.1 no significant db matches YP_003491659.1 no db matches YP_003491660.1 no significant db matches YP_003491661.1 no significant db matches YP_003491662.1 doubtful cds; no db matches YP_003491665.1 no significant db matches; poss transduced YP_003491666.1 no significant db matches YP_003491672.1 no significant db matches YP_003491674.1 no significant db matches YP_003491676.1 no db matches YP_003491677.1 no significant db matches YP_003491678.1 no significant db matches YP_003491679.1 no significant db matches YP_003491680.1 no db matches YP_003491681.1 no dignificant db matches YP_003491682.1 no significant db matches YP_003491688.1 no db matches YP_003491692.1 phage-encoded membrane protein YP_003491710.1 strong matches to receiver domain of two component system response regulator, but no DNA binding domain; cluster 0571 with SCAB25141; TTA-Leu codon(s) 121 may indicate regulation by BldA YP_003491712.1 cluster 0572 with SCAB25161 YP_003491726.1 cluster 0577 with SCAB25801 YP_003491738.1 cluster 0581 with SCAB26261 YP_003491755.1 no significant db matches YP_003491780.1 TTA-Leu codon(s) 11 may indicate regulation by BldA YP_003491791.1 sortase-like YP_003491794.1 no full length db matches; N-term PF04542 match YP_003491800.1 no significant db matches YP_003491815.1 doubtful cds YP_003491816.1 no db matches YP_003491822.1 PF00072 and PF07992: might receive response from SCAB62671 to modulate oxidoreductase activity? YP_003491826.1 no significant db matches YP_003491827.1 no db matches YP_003491830.1 no db matches YP_003491844.1 no signficant Pfam A domains YP_003491847.1 cluster 0135 collects two pairs: SCAB3291 and SCAB3301, SCAB62911 and SCAB62921 YP_003491887.1 extra 100aa at N term compared to db matches? YP_003491892.1 TTA-Leu codon(s) 171 may indicate regulation by BldA YP_003491895.1 single db match not full length YP_003491897.1 TTA-Leu codon(s) 28 may indicate regulation by BldA YP_003491907.1 low complexity YP_003491920.1 TTA-Leu codon(s) 216 may indicate regulation by BldA YP_003491924.1 borderline-significant to other S. sp 2ndry metab genes YP_003491954.1 TTA-Leu codon(s) 4 may indicate regulation by BldA YP_003492011.1 no significant db matches YP_003492014.1 repeats between aa 46..104 YP_003492016.1 TTA-Leu codon(s) 14 may indicate regulation by BldA YP_003492037.1 no signficant db matches YP_003492038.1 no significant db matches YP_003492053.1 possibly phage-encoded; contains coiled coil YP_003492072.1 TTA-Leu codon(s) 82 may indicate regulation by BldA YP_003492084.1 cluster 0623 with SCAB30311 YP_003492118.1 cluster 0489 with SCAB21251 YP_003492123.1 no db matches YP_003492131.1 cluster 0488 with SCAB21241 YP_003492132.1 cluster 0487 with SCAB21231 YP_003492135.1 no full length matches YP_003492140.1 TTA-Leu codon(s) 6 may indicate regulation by BldA YP_003492147.1 no db matches YP_003492203.1 has below-significant matches to insulin-like growth factor and alpha-amylase inhibitors YP_003492204.1 doubtful cds YP_003492205.1 doubtful cds YP_003492206.1 doubtful cds YP_003492212.1 cluster 0616 with SCAB29631 YP_003492215.1 contains G/N/Q-rich hydrophilic region with two direct repeats YP_003492248.1 a.k.a adenosylcobinamide-GDP ribazoletransferase YP_003492257.1 PF04012 may indicate sigma-54-regulator function YP_003492283.1 contains coiled coil regions YP_003492284.1 contains coiled coil regions YP_003492345.1 coiled coil region and MQQGG repeats and degenerate repeat regions YP_003492351.1 cluster 0618 with SCAB30071 YP_003492354.1 cluster 0025 8: SCAB3371, SCAB4481, SCAB7601, SCAB11701, SCAB20281, SCAB40511, SCAB68181 YP_003492356.1 TTA-Leu codon(s) 113 may indicate regulation by BldA YP_003492379.1 within histidine biosynthesis cluster YP_003492420.1 cluster 0606 with SCAB28241 YP_003492435.1 no db matches YP_003492438.1 TTA-Leu codon(s) 69 may indicate regulation by BldA YP_003492456.1 cluster 0496 with SCAB21631 YP_003492458.1 TTA-Leu codon(s) 8 may indicate regulation by BldA YP_003492489.1 cluster 0613 with SCAB29511 YP_003492503.1 cluster 0095 with SCAB4751, SCAB10521, SCAB83281 YP_003492512.1 NO Pfam A or B matches YP_003492520.1 TTA-Leu codon(s) 8 may indicate regulation by BldA YP_003492522.1 contains direct repeats SGASSVPG aa338..362 YP_003492529.1 TTA-Leu codon(s) 10 may indicate regulation by BldA YP_003492540.1 may be associated with iron-sulphur cluster assembly - with SCAB70051? YP_003492550.1 cluster 0574 with SCAB25191 YP_003492560.1 cluster 0842 with SCAB89081 YP_003492561.1 no full-length matches in db YP_003492582.1 cluster 0844 with SCAB77621 YP_003492584.1 no full length matches: N term, Erwinia pectate lyase P0C1A4; C term, Bacillus pectinesterase domain AB062880; TTA-Leu codon(s) 9 may indicate regulation by BldA YP_003492603.1 compatible solute ectoine: osmoprotectant YP_003492615.1 some fasta hits have HAMAP MF_00548 (ZUPT_ECOLI) YP_003492639.1 PF04545/PF08281 at Cterm: this protein may bind -35 element of Sigma-70 promoter YP_003492649.1 no evidence found to support annotating product as sterol desaturase YP_003492687.1 87%aaid to first 86aa of SCO1792; cf SCAB71591 and SCAB71611 YP_003492688.1 46%aaid to SCO1792 full length; cf SCAB71581 and 71611 YP_003492690.1 TTA-Leu codon(s) 64 may indicate regulation by BldA YP_003492691.1 70%aaid to end of SCO1792; cf SCAB71581 and SCAB71591 YP_003492692.1 contains pair of direct repeats; n-terminal not clear YP_003492698.1 Nterminal extension compared with similar proteins poss. encodes TonB receptor protein signature YP_003492708.1 SCO1772 has HAMAP MF_01227 YP_003492726.1 SCO1758 has HAMAP MF_00195 YP_003492754.1 PF00817 suggests product may have role in DNA UV-protection YP_003492785.1 sortase-like YP_003492786.1 no significant fasta db matches YP_003492893.1 TTA-Leu codon(s) 38 may indicate regulation by BldA YP_003492904.1 cluster 0495 with SCAB21581 YP_003492912.1 first cds in the str/sts cluster sequence YP_003492919.1 SCO1595, SAV6742, have HAMAP MF_00281 YP_003492924.1 TTA-Leu codon(s) 35 may indicate regulation by BldA YP_003492934.1 no HTH domain to justify LysR-regulator-family annotation YP_003492944.1 no full length matches YP_003492954.1 no automatic HMMPfams: E-values for PF04542(0.0055) PF08281(0.18) YP_003492980.1 has 26%aa_id to E. carotovora TogB, pectic oligomer-binding? YP_003493005.1 maybe involved in preprotein translocation YP_003493021.1 expression confirmed 1 YP_003493030.1 SCO1490 and SAV6860 have MF_00073 YP_003493033.1 SAV6863 and SCO1487 have HAMAP MF_00001 YP_003493053.1 cluster 0481 with SCAB20981 YP_003493064.1 no significant db matches YP_003493171.1 TTA-Leu codon(s) 94 may indicate regulation by BldA YP_003493174.1 no significant db matches YP_003493179.1 no significant db matches YP_003493181.1 no full-length matches YP_003493200.1 35% aa_d to S. aureus vraD many similar ABC transporters exist YP_003493213.1 no significant db matches YP_003493214.1 no significant db matches; TTA-Leu codon(s) 45 may indicate regulation by BldA YP_003493235.1 PF07944 suggests glcosyl hydrolase function YP_003493236.1 only PF02826 (NAD-binding part of 2-hydroxyacid dehd.) not substrate-binding domain of that protein hence not annotated as 2-hydroxyacid-family dehydrogenase YP_003493240.1 no full-length matches in db YP_003493256.1 no significant db matches YP_003493259.1 CDS contains PAI insertion motif GTTCATGAAGT; strong match in S. turgidiscabies pathogenicity island YP_003493261.1 clutser 0844 with SCAB70501 YP_003493265.1 cluster 0773 with SCAB57621 YP_003493270.1 some have siderophore-binding protein but I can't find an evidence trail for it YP_003493289.1 cluster 0386 with SCAB1391 YP_003493299.1 TTA-Leu codon(s) 39 may indicate regulation by BldA YP_003493309.1 TTA-Leu codon(s) 11 may indicate regulation by BldA YP_003493322.1 codon 70 TTA_Leu (rare) indicates regulation by availability of BldA; TTA-Leu codon(s) 70 may indicate regulation by BldA YP_003493328.1 no db matches YP_003493329.1 no significant db matches YP_003493335.1 cluster 0586 with SCAB26901 YP_003493342.1 no db matches YP_003493352.1 TTA-Leu codon(s) 11 may indicate regulation by BldA YP_003493371.1 uncharacterised protein, same transcription unit as pectinesterase, further investigation if pathogenicity associated YP_003493381.1 no significant db matches YP_003493387.1 cutinase genes associated with pathogenicity in some organisms but no characterised similar gene found to support PF01083 on this cds YP_003493393.1 may bind cations from PF01814 YP_003493406.1 PAS domain may indicate role in signal detection YP_003493410.1 conservon; TTA-Leu codon(s) 14 may indicate regulation by BldA YP_003493426.1 TTA-Leu codon(s) 7 may indicate regulation by BldA YP_003493430.1 TTA-Leu codon(s) 21 may indicate regulation by BldA YP_003493433.1 TTA-Leu codon(s) 144 may indicate regulation by BldA YP_003493440.1 TTA-Leu codon(s) 79 may indicate regulation by BldA YP_003493444.1 TTA-Leu codon(s) 49 may indicate regulation by BldA YP_003493452.1 TTA-Leu codon(s) 332 may indicate regulation by BldA YP_003493463.1 no db matches YP_003493468.1 no significant db matches YP_003493469.1 no significant db matches YP_003493470.1 cluster 0583 with SCAB26541 YP_003493473.1 cluster 0592 with SCAB27311 YP_003493498.1 cluster 0604 with SCAB28061 YP_003493507.1 germicidin synthase: homolog to SCO7221; alignment with S. avermitilis indictaed pseudogene SCAB80172 YP_003493515.1 possibly transposase by similarity (no Pfam); TTA-Leu codon(s) 59 may indicate regulation by BldA YP_003493516.1 possibly transposase by similarity (no Pfam) YP_003493519.1 TTA-Leu codon(s) 356 may indicate regulation by BldA YP_003493520.1 TTA-Leu codon(s) 322 may indicate regulation by BldA YP_003493523.1 TTA-Leu codon(s) 57 may indicate regulation by BldA YP_003493527.1 TTA-Leu codon(s) 3 may indicate regulation by BldA YP_003493528.1 no significant db matches YP_003493532.1 no db matches YP_003493533.1 no db matches YP_003493539.1 no significant db matches YP_003493548.1 TTA-Leu codon(s) 53 may indicate regulation by BldA YP_003493571.1 proline rich, matches may be misleading YP_003493574.1 no significant db matches YP_003493575.1 TTA-Leu codon(s) 219 may indicate regulation by BldA YP_003493578.1 TTA-Leu codon(s) 173 may indicate regulation by BldA YP_003493581.1 PAS domain may indicate role in signal detection YP_003493583.1 no db matches YP_003493587.1 annotation transferred from E. coli YP_003493609.1 no significant db matches YP_003493616.1 no significant db matches YP_003493619.1 no significant db matches YP_003493620.1 no db matches YP_003493625.1 no significant db matches YP_003493633.1 pseudo: looks like fragment YP_003493635.1 no significant db matches YP_003493663.1 TTA-Leu codon(s) 384 may indicate regulation by BldA YP_003493685.1 no significant db matches YP_003493686.1 no db matches YP_003493687.1 no significant db matches YP_003493695.1 no significant db matches YP_003493696.1 cluster 0734 with SCAB5041 YP_003493699.1 no db matches YP_003493721.1 no significant db matches YP_003493754.1 cluster 0625 with SCAB30751 YP_003493762.1 no significant db matches YP_003493776.1 no significant db matches YP_003493777.1 TTA-Leu codon(s) 112 may indicate regulation by BldA YP_003493778.1 TTA-Leu codon(s) 113 may indicate regulation by BldA YP_003493787.1 architecture similar to O-antigen polmerases YP_003493793.1 no significant db matches YP_003493797.1 TTA-Leu codon(s) 63 may indicate regulation by BldA YP_003493803.1 PAS domain may indicate role in signal detection YP_003493804.1 cluster 0590 with SCAB27251 YP_003493805.1 cluster 0095 with SCAB4751, SCAB10521, SCAB69701 YP_003493838.1 cluster 0610 with SCAB28931, but lacks N-terminal Rho domain YP_003493886.1 no db matches YP_003493888.1 no db matches YP_003493891.1 no significant db matches YP_003493941.1 no significant db matches YP_003493942.1 no significant db matches YP_003493951.1 TTA-Leu codon(s) 320 may indicate regulation by BldA YP_003493955.1 TTA-Leu codon(s) 6 may indicate regulation by BldA YP_003493968.1 codon 110 TTA-Leu (bldA); homologs in S. coelicolor and S. avermitilis also have TTA; TTA-Leu codon(s) 110 may indicate regulation by BldA YP_003493969.1 cluster 0582 with SCAB26271 YP_003493970.1 cluster 0884 with SCAB87091; TTA-Leu codon(s) 62 may indicate regulation by BldA YP_003493973.1 no significant db matches YP_003493980.1 cluster 0758 with SCAB5471 YP_003493992.1 no significant db matches YP_003494003.1 TTA-Leu codon(s) 44 may indicate regulation by BldA YP_003494013.1 maybe siderophore transporter YP_003494020.1 conserved domain IucD; no Pfam YP_003494045.1 possibly regulatory domain subunit for ion channel (from PF00248) YP_003494049.1 TTA-Leu codon(s) 11 may indicate regulation by BldA YP_003494052.1 no significant db matches YP_003494090.1 TTA-Leu codon(s) 22 may indicate regulation by BldA YP_003494096.1 no significant db matches YP_003494107.1 no full-length matches; cluster 0886 with SCAB90871 YP_003494150.1 no db matches YP_003494151.1 no significant db matches YP_003494154.1 annotation transferred from E. coli YP_003494160.1 no db matches YP_003494162.1 annotation transferred from E. coli YP_003494171.1 cluster 0884 with SCAB85001 YP_003494173.1 many similar YP_003494178.1 no db matches YP_003494179.1 no significant db matches YP_003494181.1 no significant db matches YP_003494184.1 cluster 0138: SCAB35111, SCAB57961, SCAB59871, SCAB87221; no Pfam: evidence for transposition inferred from 4 exact duplicates in genome; TTA-Leu codon(s) 13, 36 may indicate regulation by BldA YP_003494187.1 no db matches YP_003494190.1 no significant db matches YP_003494199.1 no db matches YP_003494200.1 no significant db matches YP_003494201.1 no db matches YP_003494207.1 no significant db matches YP_003494250.1 TTA-Leu codon(s) 28 may indicate regulation by BldA YP_003494265.1 no signficant db matches YP_003494266.1 no significant db matches YP_003494274.1 no significant db matches YP_003494277.1 TTA-Leu codon(s) 33 may indicate regulation by BldA YP_003494290.1 no significant db matches YP_003494293.1 no significant db matches YP_003494296.1 TTA-Leu codon(s) 46 may indicate regulation by BldA YP_003494301.1 no significant db matches YP_003494302.1 no signficant db matches YP_003494307.1 no significant db matches YP_003494308.1 no significant db matches YP_003494323.1 TTA-Leu codon(s) 196 may indicate regulation by BldA YP_003494326.1 no significant db matches YP_003494332.1 annotation transferred from E. coli YP_003494336.1 no significant db matches YP_003494338.1 no significant db matches YP_003494343.1 no significant db matches YP_003494353.1 cluster 0555 with SCAB23571 YP_003494366.1 cluster 0843 with SCAB70281 YP_003494381.1 no signficant db matches YP_003494382.1 no significant db matches; TTA-Leu codon(s) 77 may indicate regulation by BldA YP_003494383.1 no significant db matches YP_003494387.1 no significant db matches YP_003494422.1 TTA-Leu codon(s) 13 may indicate regulation by BldA YP_003494427.1 no significant db matches YP_003494434.1 no significant db matches YP_003494435.1 no db matches YP_003494438.1 no significant db matches; TTA-Leu codon(s) 75 may indicate regulation by BldA YP_003494441.1 no db matches YP_003494447.1 no significant db matches YP_003494449.1 cluster 0630 with SCAB33981 YP_003494455.1 cluster 0569 with SCAB24901 YP_003494456.1 cluster 0570 with SCAB24911 YP_003494474.1 no significant db matches YP_003494475.1 No obvious secondary metabolite cluster: transferred annotation possibly misleading. YP_003494501.1 no db matches YP_003494508.1 cluster 0741 with SCAB51601 YP_003494528.1 no significant db matches YP_003494531.1 no db matches YP_003494533.1 no significant db matches YP_003494534.1 overlaps see SCAB90821 IS transposase YP_003494539.1 no significant db matches YP_003494540.1 cluster 0886 with SCAB86431 YP_003494541.1 no significant db matches YP_003494543.1 no significant db matches YP_003494547.1 cluster 0317 with SCAB0131 YP_003494548.1 cluster 0316 with SCAB0121 YP_003494549.1 cluster 0315 with SCAB0111; no significant db matches YP_003494552.1 cluster 0312 with SCAB0081 YP_003494558.1 cluster 0306 with SCAB0021 YP_003494559.1 cluster 0305 with SCAB0001