-- dump date 20120504_163521 -- class Genbank::CDS -- table cds_note -- id note YP_729240.1 binds the polymerase to DNA and acts as a sliding clamp YP_729242.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_729243.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_729244.1 identified by match to protein family HMM PF00521; match to protein family HMM PF03989 YP_729245.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_729246.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00276 YP_729248.1 identified by match to protein family HMM PF04367 YP_729249.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_729250.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_729251.1 identified by match to protein family HMM PF07228 YP_729252.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_729253.1 identified by match to protein family HMM PF00076 YP_729254.1 identified by match to protein family HMM PF01207 YP_729255.1 identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357 YP_729256.1 identified by match to protein family HMM PF00890; match to protein family HMM PF03486; match to protein family HMM TIGR00275 YP_729258.1 identified by match to protein family HMM PF00482 YP_729259.1 identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_729260.1 identified by match to protein family HMM PF00437 YP_729261.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_729262.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_729263.1 identified by similarity to PIR:AI2111 YP_729264.1 identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157 YP_729265.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_729266.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_729267.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_729268.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_729269.1 identified by match to protein family HMM TIGR01379 YP_729270.1 identified by match to protein family HMM PF00160 YP_729271.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_729272.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531 YP_729273.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_729274.1 identified by match to protein family HMM PF01370 YP_729276.1 identified by match to protein family HMM PF01844 YP_729277.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271 YP_729283.1 identified by similarity to SP:P14776; match to protein family HMM PF00266 YP_729284.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_729285.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_729288.1 identified by similarity to GB:CAE20222.1 YP_729289.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_729290.1 identified by match to protein family HMM PF00534 YP_729291.1 identified by match to protein family HMM PF01370 YP_729293.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_729295.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_729296.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_729297.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_729298.1 identified by match to protein family HMM TIGR02669 YP_729299.1 identified by match to protein family HMM PF00535 YP_729300.1 identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397 YP_729302.1 binds and unfolds substrates as part of the ClpXP protease YP_729303.1 identified by similarity to SP:P19245; match to protein family HMM PF00574; match to protein family HMM TIGR00493 YP_729304.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_729305.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 YP_729306.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_729307.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_729309.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432 YP_729310.1 identified by similarity to GB:CAE20244.1; match to protein family HMM PF04481 YP_729312.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_729313.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP YP_729314.1 identified by match to protein family HMM PF03783 YP_729315.1 required for the assembly and function of the DNAX complex which are required for the assembly of the subunit beta onto primed DNA YP_729316.1 identified by similarity to SP:P21638 YP_729317.1 This protein performs the mismatch recognition step during the DNA repair process YP_729318.1 controls the interaction of photosystem II cores with light-harvesting antenna YP_729319.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; subunit beta of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_729320.1 identified by match to protein family HMM PF00903 YP_729321.1 identified by match to protein family HMM PF00583 YP_729322.1 identified by match to protein family HMM PF00534 YP_729323.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins YP_729324.1 identified by similarity to SP:Q06750; match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_729325.1 identified by match to protein family HMM PF00392 YP_729326.1 identified by match to protein family HMM PF01738 YP_729327.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_729328.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_729329.1 negatively supercoils closed circular double-stranded DNA YP_729330.1 identified by similarity to GB:CAE20297.1 YP_729331.1 identified by match to protein family HMM PF02537 YP_729332.1 identified by match to protein family HMM PF02537 YP_729333.1 identified by match to protein family HMM PF00255 YP_729334.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 YP_729335.1 identified by match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_729336.1 identified by match to protein family HMM PF00561 YP_729337.1 identified by match to protein family HMM PF00873 YP_729338.1 identified by match to protein family HMM TIGR01730 YP_729339.1 identified by match to protein family HMM PF00293; match to protein family HMM PF00730; match to protein family HMM TIGR00586 YP_729340.1 identified by match to protein family HMM PF00294 YP_729341.1 identified by match to protein family HMM PF00294 YP_729342.1 identified by match to protein family HMM PF00120 YP_729343.1 identified by match to protein family HMM PF00474 YP_729344.1 identified by similarity to GB:CAE20312.1; match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_729345.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_729346.1 identified by match to protein family HMM PF00597 YP_729347.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_729348.1 functions in MreBCD complex in some organisms YP_729349.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_729351.1 identified by match to protein family HMM PF01547 YP_729352.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_729353.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_729354.1 identified by similarity to GB:CAE20323.1 YP_729358.1 identified by match to protein family HMM PF03781 YP_729359.1 identified by match to protein family HMM PF00069 YP_729360.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_729361.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_729362.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_729363.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_729366.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_729367.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_729368.1 identified by match to protein family HMM PF00109; match to protein family HMM PF02801 YP_729369.1 carries the fatty acid chain in fatty acid biosynthesis YP_729370.1 part of the core of the reaction center of photosystem I YP_729371.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_729372.1 identified by match to protein family HMM TIGR00028 YP_729373.1 identified by match to protein family HMM PF01402 YP_729382.1 identified by match to protein family HMM PF01370 YP_729383.1 identified by match to protein family HMM PF01370; match to protein family HMM TIGR01472 YP_729384.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025 YP_729386.1 identified by match to protein family HMM PF02563 YP_729387.1 identified by match to protein family HMM PF02706 YP_729388.1 identified by match to protein family HMM PF00782 YP_729389.1 identified by similarity to GB:AAQ00379.1 YP_729390.1 identified by similarity to PIR:AB1913 YP_729393.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746 YP_729396.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_729397.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_729399.1 identified by match to protein family HMM PF02706 YP_729403.1 identified by match to protein family HMM PF01909 YP_729406.1 identified by match to protein family HMM PF02350 YP_729407.1 identified by match to protein family HMM PF02348 YP_729408.1 identified by match to protein family HMM PF03023 YP_729409.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07685; match to protein family HMM TIGR01855 YP_729411.1 identified by match to protein family HMM PF01354; match to protein family HMM PF03102 YP_729413.1 identified by match to protein family HMM PF00977 YP_729415.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_729416.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01041 YP_729418.1 identified by match to protein family HMM PF01354; match to protein family HMM PF03102 YP_729419.1 identified by match to protein family HMM PF02348 YP_729420.1 identified by match to protein family HMM PF02397 YP_729424.1 identified by match to protein family HMM PF00106 YP_729429.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_729431.1 identified by match to protein family HMM PF02080 YP_729432.1 Essential for efficient processing of 16S rRNA YP_729433.1 identified by similarity to GB:CAE22124.1 YP_729434.1 identified by match to protein family HMM PF00520; match to protein family HMM PF07885 YP_729435.1 identified by match to protein family HMM PF01850 YP_729436.1 identified by match to protein family HMM TIGR01552 YP_729437.1 identified by match to protein family HMM PF00035; match to protein family HMM PF00636 YP_729438.1 identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220 YP_729439.1 identified by similarity to GB:CAE22122.1 YP_729440.1 identified by similarity to GB:CAE22121.1 YP_729441.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093 YP_729442.1 identified by match to protein family HMM PF00999 YP_729444.1 identified by match to protein family HMM PF00561 YP_729445.1 identified by match to protein family HMM PF01263 YP_729446.1 identified by match to protein family HMM PF01565 YP_729448.1 identified by match to protein family HMM PF00903 YP_729449.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_729450.1 Converts isocitrate to alpha ketoglutarate YP_729451.1 identified by similarity to GB:AAQ00795.1 YP_729452.1 identified by match to protein family HMM PF01126 YP_729455.1 identified by match to protein family HMM PF00005 YP_729456.1 identified by match to protein family HMM PF00534 YP_729457.1 identified by match to protein family HMM PF00534 YP_729458.1 identified by similarity to SP:Q9R9N1; match to protein family HMM PF00534 YP_729459.1 identified by match to protein family HMM PF00534 YP_729462.1 identified by match to protein family HMM PF00685 YP_729463.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073 YP_729464.1 identified by match to protein family HMM PF01743 YP_729466.1 identified by match to protein family HMM PF02769 YP_729467.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_729468.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_729469.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_729470.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_729472.1 may be involved in assembling and maintaining PSII complexes in the thylakoid membrane YP_729473.1 may have a role in PSII core assembly, maintaining PSII dimers and donor side electron transfer YP_729474.1 photosystem II reaction center subunit VI; associated with the reaction center of photosystem II YP_729475.1 photosystem II reaction center subunit VI; associated with the reaction center of photosystem II YP_729476.1 similar to Arabidopsis thaliana photosystem II assembly protein YP_729477.1 identified by match to protein family HMM PF00301 YP_729478.1 Catalyzes the transfer of electrons from NADH to quinone YP_729479.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_729480.1 catalyzes the transfer of electrons from NADH to quinones YP_729481.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826 YP_729482.1 identified by match to protein family HMM PF00005 YP_729484.1 identified by match to protein family HMM PF01078; match to protein family HMM TIGR02031; match to protein family HMM TIGR02442 YP_729485.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_729487.1 identified by match to protein family HMM PF00293 YP_729488.1 identified by similarity to SP:P05327; match to protein family HMM PF00875; match to protein family HMM PF03441 YP_729489.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212 YP_729494.1 NADH-dependent; catalyzes a key regulatory step in fatty acid biosynthesis YP_729496.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_729497.1 identified by match to protein family HMM PF03055 YP_729499.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_729500.1 identified by match to protein family HMM PF00165 YP_729501.1 identified by match to protein family HMM PF00072 YP_729502.1 identified by similarity to GB:CAE22049.1 YP_729503.1 identified by match to protein family HMM PF07690 YP_729504.1 identified by match to protein family HMM PF02028 YP_729505.1 identified by match to protein family HMM PF01266 YP_729508.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_729509.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_729511.1 identified by match to protein family HMM PF01571 YP_729512.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_729514.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_729515.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_729516.1 identified by match to protein family HMM PF05682 YP_729517.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_729518.1 may be involved in binding plastoquinone and maintaining PSII dimers YP_729519.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_729520.1 identified by match to protein family HMM PF02654; match to protein family HMM TIGR00317 YP_729521.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_729523.1 identified by match to protein family HMM PF02230 YP_729524.1 involved in de novo purine biosynthesis YP_729527.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_729528.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_729529.1 Regulatory factor involved in maltose metabolism YP_729530.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_729534.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_729535.1 identified by match to protein family HMM PF00953 YP_729536.1 identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200 YP_729537.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_729538.1 identified by similarity to SP:P94568; match to protein family HMM PF00694; match to protein family HMM TIGR00171 YP_729539.1 identified by match to protein family HMM PF00805 YP_729541.1 4.8-kDa protein; may be involved in assembling and stabilizing of PSII dimers YP_729542.1 identified by match to protein family HMM PF01074; match to protein family HMM PF07748 YP_729543.1 identified by match to protein family HMM PF02468 YP_729544.1 may be involved in regulating PSII assembly and/or stability YP_729545.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411 YP_729546.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_729548.1 identified by similarity to GB:CAE22008.1 YP_729550.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_729551.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_729553.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_729554.1 identified by match to protein family HMM PF02511; match to protein family HMM TIGR02170 YP_729555.1 identified by match to protein family HMM PF00085 YP_729557.1 identified by match to protein family HMM PF01464 YP_729559.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_729560.1 identified by match to protein family HMM PF01869 YP_729561.1 identified by match to protein family HMM PF04932 YP_729562.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_729567.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_729569.1 identified by match to protein family HMM PF00487 YP_729570.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_729571.1 identified by match to protein family HMM PF02633 YP_729572.1 identified by similarity to GB:AAP99777.1 YP_729573.1 identified by match to protein family HMM PF02592 YP_729575.1 identified by match to protein family HMM PF02245; match to protein family HMM TIGR00567 YP_729576.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_729577.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_729582.1 identified by match to protein family HMM PF00144 YP_729583.1 identified by similarity to GB:CAE06815.1 YP_729584.1 identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521 YP_729585.1 identified by match to protein family HMM PF01716 YP_729586.1 identified by match to protein family HMM PF01747; match to protein family HMM TIGR00339 YP_729587.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_729588.1 identified by similarity to SP:P50846; match to protein family HMM PF01081 YP_729590.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_729591.1 identified by match to protein family HMM PF06172 YP_729593.1 identified by match to protein family HMM PF00128 YP_729594.1 catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate YP_729595.1 identified by match to protein family HMM PF02566 YP_729596.1 fusion of two genes involved in the fifth and sixth steps of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate and converts orotidine 5'phosphate to UMP and carbon dioxide YP_729598.1 identified by match to protein family HMM PF03458 YP_729600.1 identified by match to protein family HMM PF00124; match to protein family HMM TIGR01151 YP_729601.1 identified by match to protein family HMM PF04055 YP_729602.1 identified by match to protein family HMM PF02517 YP_729603.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_729604.1 catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis YP_729605.1 identified by match to protein family HMM PF04055 YP_729606.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_729607.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_729609.1 identified by match to protein family HMM PF00800; match to protein family HMM PF01842 YP_729610.1 identified by match to protein family HMM PF02353 YP_729611.1 identified by match to protein family HMM PF02190 YP_729612.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_729613.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_729614.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_729615.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_729616.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_729619.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00478; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898 YP_729620.1 identified by match to protein family HMM PF03795 YP_729621.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_729622.1 identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466 YP_729624.1 with PsaB binds the primary electron donor of photosystem I, P700, and subsequent electron acceptors as part of photosystem I YP_729625.1 with PsaA binds the primary electron donor of photosystem I, P700, and subsequent electron acceptors as part of photosystem I YP_729627.1 identified by match to protein family HMM PF00487 YP_729628.1 identified by match to protein family HMM PF00873 YP_729629.1 identified by match to protein family HMM PF02605 YP_729630.1 identified by match to protein family HMM TIGR03052 YP_729631.1 identified by similarity to GB:AAQ00721.1 YP_729632.1 identified by match to protein family HMM PF00535 YP_729633.1 identified by match to protein family HMM PF00877 YP_729636.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_729637.1 identified by match to protein family HMM PF01844 YP_729638.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_729639.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_729640.1 forms a direct contact with the tRNA during translation YP_729641.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_729642.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_729643.1 is a component of the macrolide binding site in the peptidyl transferase center YP_729644.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_729645.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_729646.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_729647.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_729648.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_729649.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_729650.1 late assembly protein YP_729651.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_729652.1 binds 5S rRNA along with protein L5 and L25 YP_729653.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_729654.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_729655.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_729656.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_729657.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_729658.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_729659.1 one of the stabilizing components for the large ribosomal subunit YP_729660.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_729661.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_729662.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_729663.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_729664.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_729665.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_729666.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_729667.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_729669.1 identified by match to protein family HMM PF00037 YP_729670.1 identified by match to protein family HMM PF01424 YP_729671.1 identified by match to protein family HMM PF00702 YP_729672.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_729675.1 identified by similarity to GB:CAE21900.1 YP_729676.1 catalyzes the formation of tyrosine from arogenate YP_729677.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02733 YP_729678.1 identified by match to protein family HMM PF01636; match to protein family HMM PF03881 YP_729681.1 identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237 YP_729682.1 identified by match to protein family HMM PF02572 YP_729683.1 identified by match to protein family HMM PF00733; match to protein family HMM TIGR00268 YP_729684.1 identified by match to protein family HMM PF00282; match to protein family HMM TIGR01788 YP_729685.1 Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine YP_729686.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_729688.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_729689.1 identified by match to protein family HMM PF04107; match to protein family HMM TIGR02048 YP_729690.1 identified by similarity to SP:P20579; match to protein family HMM PF00425; match to protein family HMM PF04715 YP_729691.1 identified by match to protein family HMM PF02531 YP_729692.1 identified by match to protein family HMM PF00512 YP_729693.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210 YP_729694.1 identified by match to protein family HMM PF01883 YP_729695.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_729697.1 identified by similarity to GB:CAE21879.1 YP_729699.1 identified by match to protein family HMM PF01612 YP_729703.1 identified by match to protein family HMM PF00520; match to protein family HMM PF07885 YP_729706.1 identified by match to protein family HMM PF00248 YP_729708.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_729709.1 identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413 YP_729710.1 catalyzes the formation of pantothenate from pantoate and beta-alanine and the formation of cytidine diphosphate from cytidine monophosphate YP_729711.1 identified by match to protein family HMM PF01451 YP_729712.1 identified by match to protein family HMM PF03130 YP_729713.1 identified by match to protein family HMM PF03130 YP_729714.1 identified by match to protein family HMM PF06206 YP_729715.1 identified by match to protein family HMM PF00502; match to protein family HMM TIGR01338 YP_729716.1 identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339 YP_729717.1 catalyzes the reduction of 15,16-dihydrobiliverdin to (3Z)-phycoerythrobilin YP_729718.2 catalyzes the reduction of biliverdin IX-alpha to 15,16-dihydrobiliverdin YP_729722.1 identified by match to protein family HMM PF00502 YP_729723.1 identified by match to protein family HMM PF00502 YP_729724.1 identified by match to protein family HMM PF03130 YP_729725.1 identified by similarity to GB:BAC90888.1 YP_729727.1 identified by match to protein family HMM PF02985 YP_729728.1 identified by match to protein family HMM PF03130 YP_729729.1 identified by match to protein family HMM PF00427 YP_729731.1 identified by match to protein family HMM PF00502 YP_729732.1 identified by match to protein family HMM PF00502 YP_729733.1 identified by similarity to GB:CAA28262.1 YP_729736.1 identified by similarity to GB:CAB52704.1; match to protein family HMM PF06206 YP_729738.1 identified by match to protein family HMM PF00427 YP_729739.1 identified by similarity to SP:P11398; match to protein family HMM PF00427; match to protein family HMM PF01383 YP_729740.1 identified by match to protein family HMM PF00427; match to protein family HMM PF01383 YP_729741.1 identified by match to protein family HMM PF00805 YP_729742.1 identified by match to protein family HMM PF00427 YP_729743.1 identified by match to protein family HMM PF00427 YP_729744.1 identified by match to protein family HMM PF00502 YP_729751.1 identified by similarity to GB:CAE21848.1; match to protein family HMM TIGR00201 YP_729752.1 identified by similarity to GB:CAE08505.1 YP_729754.1 identified by match to protein family HMM PF00370 YP_729755.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_729756.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_729757.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_729758.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_729759.1 Ycf8; may be involved in the formation and/or stabilization of PSII system complexes YP_729760.1 identified by match to protein family HMM PF00421; match to protein family HMM TIGR03039 YP_729761.1 identified by match to protein family HMM PF00111 YP_729762.1 identified by match to protein family HMM PF05151; match to protein family HMM TIGR03038 YP_729763.1 identified by match to protein family HMM PF00582 YP_729764.1 identified by match to protein family HMM PF03061 YP_729765.1 identified by match to protein family HMM PF02481 YP_729766.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536 YP_729767.1 identified by match to protein family HMM PF01300 YP_729768.1 identified by match to protein family HMM PF00196 YP_729769.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_729770.1 identified by match to protein family HMM TIGR01968 YP_729771.1 identified by match to protein family HMM PF03775; match to protein family HMM TIGR01222 YP_729772.1 identified by match to protein family HMM PF01966 YP_729773.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_729774.1 electron transporter YP_729775.1 PetD, with cytochrome b6, cytochrome F, and the Rieske protein, makes up the large subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I YP_729776.1 identified by match to protein family HMM PF04853 YP_729779.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_729781.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_729782.1 Stabilizes the interaction between PsaC and the photosystem I core YP_729784.1 identified by similarity to SP:P15043; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_729785.1 identified by match to protein family HMM PF01476 YP_729786.1 identified by match to protein family HMM PF00171 YP_729787.1 identified by match to protein family HMM PF00128 YP_729788.1 identified by match to protein family HMM PF01266 YP_729789.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_729790.1 identified by match to protein family HMM PF00128 YP_729793.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_729794.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_729796.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_729797.1 identified by match to protein family HMM PF06175 YP_729804.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_729807.1 identified by match to protein family HMM PF03079 YP_729808.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01467 YP_729810.1 identified by match to protein family HMM PF00535 YP_729811.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_729813.1 identified by match to protein family HMM PF03734 YP_729814.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_729815.1 identified by match to protein family HMM PF02361 YP_729817.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_729818.1 identified by match to protein family HMM PF04472 YP_729819.1 identified by match to protein family HMM PF03807; match to protein family HMM TIGR00112 YP_729820.1 identified by match to protein family HMM PF00534 YP_729821.1 identified by match to protein family HMM PF07690 YP_729822.1 identified by match to protein family HMM PF02565 YP_729823.1 identified by match to protein family HMM TIGR00126 YP_729824.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_729825.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00214 YP_729826.1 identified by match to protein family HMM PF00501 YP_729835.2 identified by match to protein family HMM PF00198; match to protein family HMM PF02817 YP_729837.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_729838.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_729840.1 identified by match to protein family HMM PF01053 YP_729841.1 identified by match to protein family HMM PF01053 YP_729842.1 identified by similarity to GB:CAE21875.1 YP_729844.1 identified by similarity to GB:CAE20369.1; match to protein family HMM PF07864 YP_729845.1 identified by similarity to GB:AAQ00268.1 YP_729847.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_729848.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_729849.1 identified by match to protein family HMM PF05768 YP_729850.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_729851.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00378 YP_729852.1 identified by match to protein family HMM PF01094 YP_729854.1 identified by match to protein family HMM PF00266 YP_729861.1 identified by match to protein family HMM PF07859 YP_729865.1 identified by match to protein family HMM PF01106 YP_729866.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_729867.1 identified by match to protein family HMM PF00465 YP_729869.1 identified by match to protein family HMM PF00893 YP_729870.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_729872.1 identified by match to protein family HMM TIGR02532 YP_729877.1 identified by match to protein family HMM TIGR02532 YP_729881.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_729882.1 identified by match to protein family HMM TIGR02532 YP_729884.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_729885.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_729886.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_729887.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_729891.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_729893.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_729894.1 identified by match to protein family HMM PF00528 YP_729895.1 identified by similarity to GB:CAE20442.1 YP_729896.1 identified by match to protein family HMM PF00395 YP_729897.1 identified by match to protein family HMM PF05154 YP_729898.1 identified by match to protein family HMM PF00210 YP_729899.1 identified by match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00437 YP_729900.1 identified by match to protein family HMM PF04023 YP_729904.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_729905.1 identified by match to protein family HMM PF00210 YP_729907.1 identified by match to protein family HMM PF00578 YP_729908.1 identified by match to protein family HMM PF00588 YP_729909.1 identified by match to protein family HMM PF05433 YP_729911.1 identified by match to protein family HMM PF01035 YP_729912.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_729913.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_729914.1 identified by match to protein family HMM PF01040; match to protein family HMM TIGR01476; match to protein family HMM TIGR02056 YP_729915.1 identified by similarity to GB:CAE08191.1 YP_729916.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_729917.1 identified by similarity to PIR:AI2167 YP_729918.1 identified by match to protein family HMM PF01209; match to protein family HMM TIGR01934 YP_729919.1 identified by similarity to GB:CAE20452.1 YP_729924.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_729925.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_729927.1 identified by match to protein family HMM PF00353 YP_729935.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_729936.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360 YP_729939.1 identified by similarity to GB:CAE20484.1 YP_729940.1 identified by match to protein family HMM PF02397 YP_729941.1 identified by match to protein family HMM PF03186; match to protein family HMM TIGR00380 YP_729942.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_729943.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_729944.1 ClpR variant present in an operon with ClpP3 in Synechococcus PCC7942; ClpR is missing the catalytic triad Ser-His-Asp characteristic of serine-type proteases; the exact function of ClpR and ClpP3 is unknown however they appear to be necessary for cell viability; hydrolyzes proteins to small peptides; with the ATPases ClpA or ClpX, ClpP degrades specific substrates YP_729945.1 identified by match to protein family HMM PF01850; match to protein family HMM PF01938 YP_729946.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539 YP_729947.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_729948.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_729951.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_729952.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_729953.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_729954.1 identified by match to protein family HMM PF07755 YP_729956.1 identified by match to protein family HMM PF07969 YP_729957.1 identified by match to protein family HMM PF01565 YP_729958.1 identified by match to protein family HMM PF00805 YP_729959.1 identified by match to protein family HMM PF02875; match to protein family HMM TIGR01499 YP_729960.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_729961.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_729963.1 identified by match to protein family HMM PF00588 YP_729964.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_729965.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_729968.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02754 YP_729969.1 identified by similarity to SP:P80734; match to protein family HMM TIGR02753 YP_729970.1 identified by match to protein family HMM PF00254 YP_729973.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_729974.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196 YP_729975.1 identified by match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_729977.1 identified by match to protein family HMM PF00850 YP_729978.1 identified by match to protein family HMM PF00676 YP_729979.1 identified by match to protein family HMM PF00226 YP_729980.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_729981.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_729982.1 identified by match to protein family HMM PF02562 YP_729984.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879 YP_729986.1 identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252 YP_729987.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_729989.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_729995.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_729996.1 identified by similarity to GB:CAE20532.1; match to protein family HMM PF03992 YP_729999.1 identified by similarity to OMNI:NTL04PM0361; match to protein family HMM PF07466 YP_730000.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683 YP_730005.1 catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate YP_730007.1 identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083 YP_730009.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_730010.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_730018.1 identified by match to protein family HMM PF03109 YP_730020.1 catalyzes the phosphorylation of NAD to NADP YP_730021.1 may be pseudogene; identified by match to protein family HMM PF00486 YP_730022.1 identified by similarity to GB:CAE20544.1; match to protein family HMM PF02643 YP_730024.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469 YP_730025.1 identified by match to protein family HMM PF00165 YP_730029.1 identified by similarity to GB:CAE20546.1 YP_730030.1 identified by match to protein family HMM PF07690 YP_730032.1 identified by similarity to GB:CAE20548.1; match to protein family HMM PF04685 YP_730035.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_730036.1 identified by match to protein family HMM PF00248 YP_730037.1 identified by match to protein family HMM PF07885 YP_730039.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_730040.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_730045.1 identified by match to protein family HMM PF00717; match to protein family HMM PF01726; match to protein family HMM TIGR00498 YP_730055.1 identified by similarity to GB:CAE21565.1 YP_730056.1 identified by similarity to GB:AAM39175.1 YP_730067.1 identified by match to protein family HMM PF00210 YP_730072.1 identified by match to protein family HMM PF07859 YP_730073.1 identified by match to protein family HMM PF00106 YP_730074.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_730083.1 identified by match to protein family HMM PF07862 YP_730085.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_730086.1 identified by match to protein family HMM PF03734 YP_730087.1 identified by match to protein family HMM PF01241; match to protein family HMM TIGR03049 YP_730091.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_730094.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_730101.1 identified by similarity to GB:CAE21689.1 YP_730104.1 identified by match to protein family HMM PF00892 YP_730105.1 identified by match to protein family HMM PF00111 YP_730106.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_730108.1 identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172 YP_730109.1 identified by match to protein family HMM PF00421; match to protein family HMM TIGR01153 YP_730110.1 identified by match to protein family HMM PF00124; match to protein family HMM TIGR01152 YP_730111.1 required for the assembly of photosystem I complex YP_730112.1 identified by match to protein family HMM PF00160 YP_730113.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_730114.1 identified by match to protein family HMM PF00561 YP_730115.1 identified by match to protein family HMM PF02005 YP_730116.1 Ycf31; cytochrome b6-f complex subunit 7; with PetL, PetG and PetN makes up the small subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I YP_730117.1 identified by match to protein family HMM PF01370; match to protein family HMM PF05368 YP_730118.1 identified by similarity to GB:CAE21347.1 YP_730120.1 identified by match to protein family HMM TIGR00093 YP_730122.1 identified by similarity to SP:P20458; match to protein family HMM TIGR00008 YP_730123.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_730124.1 identified by similarity to GB:AAQ00289.1 YP_730125.1 identified by match to protein family HMM PF00271 YP_730128.1 identified by match to protein family HMM PF01262; match to protein family HMM PF05222 YP_730130.1 identified by match to protein family HMM PF02233 YP_730133.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_730134.1 identified by match to protein family HMM PF00209 YP_730137.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_730140.1 identified by match to protein family HMM PF07690 YP_730141.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_730142.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_730143.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_730149.1 identified by match to protein family HMM PF07690 YP_730151.1 identified by match to protein family HMM PF00528 YP_730152.1 identified by match to protein family HMM PF00496 YP_730154.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_730155.1 identified by match to protein family HMM PF02657 YP_730156.1 identified by similarity to GB:CAE21316.1 YP_730157.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_730161.1 identified by match to protein family HMM PF00484; match to protein family HMM TIGR01409 YP_730167.1 identified by similarity to GB:CAE19633.1 YP_730168.1 identified by similarity to GB:CAE18810.1 YP_730169.1 identified by match to protein family HMM PF02696 YP_730174.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_730175.1 identified by match to protein family HMM PF01078; match to protein family HMM TIGR02030 YP_730177.1 identified by match to protein family HMM PF00144 YP_730178.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050 YP_730179.1 identified by match to protein family HMM PF00034 YP_730180.1 cytochrome b6-f complex subunit 5; plastohydroquinone/plastocyanin oxidoreductase; with PetL, PetM and PetN makes up the small subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I YP_730181.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_730182.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_730183.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_730184.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_730186.1 negatively supercoils closed circular double-stranded DNA YP_730187.1 identified by match to protein family HMM PF01266; match to protein family HMM PF05834; match to protein family HMM TIGR01790 YP_730188.1 identified by match to protein family HMM PF03065 YP_730189.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_730190.1 identified by match to protein family HMM PF00528 YP_730192.1 identified by similarity to GB:CAE21293.1 YP_730196.1 identified by similarity to GB:AAQ00178.1 YP_730197.1 identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106 YP_730201.1 identified by match to protein family HMM PF00849 YP_730202.1 identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277 YP_730203.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_730204.1 identified by similarity to GB:BAA82613.1; match to protein family HMM PF00348 YP_730205.1 identified by match to protein family HMM PF02681 YP_730211.1 identified by match to protein family HMM PF00300 YP_730212.1 catalyzes the hydrolysis of acylphosphate YP_730213.1 identified by match to protein family HMM PF01656; match to protein family HMM PF07685; match to protein family HMM TIGR00379 YP_730215.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_730216.1 identified by match to protein family HMM PF00175 YP_730217.1 identified by match to protein family HMM PF03364 YP_730218.1 interacts with the circadian clock regulator KaiC to maintain circadian rhythms YP_730219.1 identified by similarity to GB:AAQ00165.1 YP_730221.1 identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414 YP_730222.1 identified by similarity to GB:CAE21228.1; match to protein family HMM PF02638 YP_730223.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_730224.1 identified by similarity to GB:CAE21248.1 YP_730225.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_730226.1 identified by match to protein family HMM PF01370; match to protein family HMM PF05368 YP_730227.1 amylomaltase; acts to release glucose from maltodextrins YP_730229.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_730230.1 identified by match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_730231.1 identified by similarity to GB:CAE07461.1 YP_730232.1 identified by match to protein family HMM PF03109 YP_730234.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03711 YP_730235.1 identified by match to protein family HMM PF01148 YP_730237.1 identified by match to protein family HMM PF00561 YP_730238.1 identified by match to protein family HMM PF00465 YP_730239.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_730240.1 identified by match to protein family HMM PF00583 YP_730241.1 identified by similarity to SP:P23630; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_730242.1 identified by similarity to GB:CAE21233.1; match to protein family HMM PF02457; match to protein family HMM TIGR00159 YP_730243.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate YP_730244.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 YP_730246.1 identified by match to protein family HMM PF00581 YP_730247.1 identified by match to protein family HMM PF02798; match to protein family HMM PF06108 YP_730249.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_730250.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_730251.1 identified by match to protein family HMM PF01789 YP_730253.1 identified by match to protein family HMM PF02321 YP_730256.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_730257.1 identified by match to protein family HMM PF00582; match to protein family HMM PF00999 YP_730258.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_730260.1 identified by match to protein family HMM PF00076 YP_730263.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_730264.1 identified by match to protein family HMM PF01050 YP_730266.1 identified by match to protein family HMM PF00580 YP_730267.1 identified by match to protein family HMM PF04257 YP_730268.1 identified by match to protein family HMM PF00149 YP_730270.1 identified by match to protein family HMM PF03992 YP_730271.1 identified by match to protein family HMM PF01758 YP_730282.1 identified by match to protein family HMM PF01965 YP_730289.1 identified by match to protein family HMM PF00210 YP_730290.1 identified by match to protein family HMM PF00857 YP_730291.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_730292.1 identified by similarity to GB:CAE19178.1 YP_730293.1 identified by match to protein family HMM PF02069 YP_730301.1 identified by match to protein family HMM PF02390 YP_730304.1 identified by match to protein family HMM PF01494 YP_730308.1 identified by match to protein family HMM PF00565 YP_730314.1 identified by match to protein family HMM PF07681 YP_730326.1 identified by match to protein family HMM PF07883 YP_730327.1 identified by match to protein family HMM PF07883 YP_730328.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_730336.1 identified by match to protein family HMM PF00089 YP_730337.1 identified by match to protein family HMM PF02275 YP_730338.1 identified by match to protein family HMM PF06779; match to protein family HMM PF07690 YP_730341.1 identified by match to protein family HMM PF00353 YP_730344.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_730345.1 identified by match to protein family HMM PF00072 YP_730347.1 component of photosystem II; manganese-binding polypeptide with arginine metablolizing activity YP_730348.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_730349.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_730350.1 identified by similarity to GB:AAM71888.1; match to protein family HMM PF01266; match to protein family HMM TIGR02730 YP_730353.1 identified by similarity to GB:CAE07418.1 YP_730355.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_730357.1 identified by match to protein family HMM TIGR00365 YP_730358.1 identified by match to protein family HMM PF01722 YP_730360.1 identified by match to protein family HMM PF01553 YP_730361.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_730362.1 identified by similarity to GB:CAE07426.1 YP_730371.1 identified by match to protein family HMM PF02798 YP_730372.1 identified by match to protein family HMM PF00106 YP_730376.1 identified by similarity to GB:CAE19496.1 YP_730377.1 identified by match to protein family HMM PF01475 YP_730379.1 identified by match to protein family HMM PF04472 YP_730380.1 identified by match to protein family HMM PF04055 YP_730381.1 identified by match to protein family HMM TIGR02399 YP_730382.1 identified by match to protein family HMM PF02798 YP_730383.1 identified by similarity to GB:AAP99841.1 YP_730385.1 identified by match to protein family HMM PF00149 YP_730386.1 identified by match to protein family HMM PF01636 YP_730388.1 identified by match to protein family HMM PF01464 YP_730389.1 identified by similarity to GB:CAE21049.1 YP_730390.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM TIGR01326 YP_730391.1 identified by match to protein family HMM PF04204 YP_730393.1 identified by match to protein family HMM PF03171 YP_730394.1 identified by match to protein family HMM PF03547 YP_730396.1 identified by match to protein family HMM PF00005 YP_730397.1 identified by similarity to SP:Q52814; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_730399.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_730401.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740 YP_730404.1 identified by match to protein family HMM PF01565 YP_730405.1 identified by similarity to SP:Q55451; match to protein family HMM PF01903 YP_730407.1 identified by similarity to GB:CAE21077.1 YP_730409.1 identified by match to protein family HMM PF06089 YP_730410.1 identified by match to protein family HMM PF06799 YP_730411.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_730413.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_730415.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_730417.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_730418.1 identified by match to protein family HMM PF01479 YP_730419.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_730420.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_730421.1 identified by match to protein family HMM PF04134 YP_730424.1 identified by match to protein family HMM PF00005 YP_730425.1 identified by match to protein family HMM PF00529 YP_730426.1 identified by match to protein family HMM PF00353 YP_730428.1 identified by match to protein family HMM PF00486 YP_730429.1 catalyzes the formation of Mg-protoporphyrin IX from protoporphyrin IX and Mg(2+); first committed step of chlorophyll biosynthesis YP_730430.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_730433.1 identified by match to protein family HMM PF01494 YP_730435.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_730436.1 identified by similarity to GB:CAE20984.1 YP_730441.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_730442.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_730443.1 identified by match to protein family HMM PF03976 YP_730453.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_730455.1 identified by similarity to GB:AAU28510.1 YP_730458.1 identified by match to protein family HMM PF00427 YP_730460.1 identified by similarity to GB:AAQ00609.1 YP_730461.1 identified by match to protein family HMM PF00565 YP_730462.1 identified by match to protein family HMM PF00120 YP_730463.1 identified by match to protein family HMM PF06080 YP_730467.1 identified by match to protein family HMM PF00565 YP_730469.1 identified by match to protein family HMM PF00353 YP_730472.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937 YP_730473.1 identified by match to protein family HMM TIGR02505 YP_730477.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_730480.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_730481.1 identified by match to protein family HMM PF00005 YP_730483.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_730484.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_730485.1 identified by similarity to GB:CAE20757.1 YP_730486.1 catalyzes branch migration in Holliday junction intermediates YP_730487.1 identified by match to protein family HMM PF01427 YP_730488.2 hemoprotein; NADPH dependent; with the subunit alpha (a flavoprotein) catalyzes the reduction of sulfite to sulfide YP_730489.1 identified by match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211 YP_730490.1 identified by match to protein family HMM TIGR02023; match to protein family HMM TIGR02028 YP_730491.1 identified by match to protein family HMM PF02557 YP_730492.1 identified by match to protein family HMM PF01136 YP_730493.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_730494.1 identified by match to protein family HMM PF03745 YP_730496.1 identified by match to protein family HMM PF00005 YP_730497.1 identified by match to protein family HMM PF03739 YP_730498.1 identified by match to protein family HMM PF01578 YP_730501.1 identified by match to protein family HMM PF00012; match to protein family HMM TIGR02350 YP_730502.1 identified by similarity to GB:CAE20948.1 YP_730503.1 identified by match to protein family HMM PF03741 YP_730504.1 identified by similarity to GB:BAC09630.1 YP_730508.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_730509.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460 YP_730510.1 identified by match to protein family HMM PF01523 YP_730511.1 identified by similarity to SP:P46473; match to protein family HMM PF01523 YP_730512.1 oxidative; catalyzes the formation of divinylprotochlorophyllide from magnesium-protoporphyrin IX 13-monomethyl ester in isocyclic ring formation in chlorophyll biosynthesis YP_730516.1 identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421 YP_730517.1 identified by similarity to SP:Q46363; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206 YP_730518.1 identified by similarity to GB:CAE20939.1; match to protein family HMM PF01169 YP_730519.1 identified by match to protein family HMM PF01169 YP_730520.1 identified by match to protein family HMM PF03692 YP_730521.1 identified by match to protein family HMM PF05969 YP_730522.1 identified by match to protein family HMM PF00654 YP_730523.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_730524.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_730527.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_730528.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_730529.1 identified by match to protein family HMM PF03699 YP_730530.1 identified by match to protein family HMM PF00578 YP_730531.1 identified by similarity to GB:CAE20928.1 YP_730532.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_730533.1 identified by match to protein family HMM PF00588 YP_730534.1 identified by match to protein family HMM PF02283 YP_730535.1 involved in light-induced Na+-dependent proton extrusion YP_730537.1 identified by similarity to GB:CAE20921.1 YP_730538.1 identified by similarity to GB:CAE20920.1 YP_730540.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_730541.1 identified by match to protein family HMM PF06967 YP_730543.1 identified by match to protein family HMM PF00773 YP_730544.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_730545.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_730546.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_730547.1 identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_730548.1 identified by similarity to SP:P80556; match to protein family HMM PF00502 YP_730549.1 identified by match to protein family HMM PF00226 YP_730550.1 identified by similarity to GB:CAE20910.1 YP_730551.1 identified by similarity to GB:AAQ00007.1 YP_730552.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937 YP_730554.1 identified by match to protein family HMM TIGR02669 YP_730558.1 identified by similarity to GB:CAE20905.1 YP_730560.1 identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082 YP_730561.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_730562.1 identified by match to protein family HMM PF02514; match to protein family HMM TIGR02257 YP_730564.1 identified by match to protein family HMM PF02811 YP_730565.1 identified by match to protein family HMM PF03653 YP_730566.1 identified by match to protein family HMM PF04244 YP_730568.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_730569.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_730570.1 identified by similarity to GB:CAE20896.1 YP_730571.1 identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666 YP_730572.1 identified by similarity to GB:CAE20894.1 YP_730574.1 identified by match to protein family HMM PF00266 YP_730575.1 identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 YP_730578.1 identified by similarity to GB:CAE20369.1; match to protein family HMM PF07864 YP_730579.1 identified by match to protein family HMM PF00589 YP_730582.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_730583.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_730585.1 identified by match to protein family HMM PF01510 YP_730586.1 identified by match to protein family HMM PF00595 YP_730587.1 identified by similarity to GB:BAC92231.1 YP_730588.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_730589.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_730590.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; note this protein has an additional C-terminal tail of unknown function as compared to similar bifunctional enzymes YP_730591.1 identified by match to protein family HMM PF00160 YP_730592.1 identified by match to protein family HMM PF00896; match to protein family HMM TIGR01694 YP_730593.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_730595.1 identified by match to protein family HMM PF00226; match to protein family HMM PF01556 YP_730596.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_730597.1 identified by similarity to SP:P07653; match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_730598.1 identified by similarity to SP:P07654; match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_730599.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_730600.1 identified by match to protein family HMM PF00111 YP_730601.1 identified by match to protein family HMM PF00459 YP_730602.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_730603.1 identified by match to protein family HMM PF00037 YP_730604.1 molecular chaperone YP_730605.1 required for 70S ribosome assembly YP_730606.1 identified by match to protein family HMM PF00578; match to protein family HMM TIGR01409 YP_730607.1 identified by match to protein family HMM PF00982; match to protein family HMM TIGR02398 YP_730608.1 identified by match to protein family HMM PF01547 YP_730609.1 identified by match to protein family HMM PF00528 YP_730610.1 identified by match to protein family HMM PF00528 YP_730611.1 identified by match to protein family HMM PF00005 YP_730613.1 identified by similarity to GB:CAE20864.1 YP_730614.1 identified by similarity to GB:CAE07804.1 YP_730615.1 photosystem I subunit PsaK; maybe involved in the assembly of PSI monomers into trimers; active under low light conditions YP_730616.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_730617.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_730618.1 identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281 YP_730619.1 identified by match to protein family HMM PF02325 YP_730620.1 identified by match to protein family HMM PF03819 YP_730621.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_730622.1 identified by match to protein family HMM PF02687 YP_730623.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_730624.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; in Synechococcus this protein (ClpP1)is constitutive and levels increased with the increase of light. YP_730625.1 Psb29; involved in biogenesis of the photosystem II; in Arabidopsis it interacts with the heterotrimeric G-protein (GPA1) and seems to be involved in a D-glucose signaling mechanism between plastid and the plasma membranes YP_730628.1 subunit VIII; plays a crucial role in complex assembly and/or stability; with PetL, PetG and PetM makes up the small subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I YP_730629.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_730630.1 identified by match to protein family HMM PF03209; match to protein family HMM PF07690 YP_730632.1 identified by similarity to GB:CAE20846.1 YP_730633.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_730634.1 identified by match to protein family HMM PF00528 YP_730635.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_730636.1 identified by match to protein family HMM PF02636 YP_730640.1 identified by match to protein family HMM PF00149 YP_730641.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_730643.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA YP_730644.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_730645.1 identified by similarity to GB:CAE21207.1 YP_730646.1 identified by similarity to GB:CAE19476.1 YP_730648.1 identified by match to protein family HMM PF01757 YP_730651.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_730653.1 identified by match to protein family HMM PF01145 YP_730654.1 identified by match to protein family HMM PF01145 YP_730657.1 identified by match to protein family HMM PF00226 YP_730658.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_730660.1 identified by match to protein family HMM PF00106 YP_730661.1 identified by match to protein family HMM PF01370 YP_730662.1 identified by match to protein family HMM PF00067 YP_730664.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_730665.1 identified by match to protein family HMM PF00195; match to protein family HMM PF02797 YP_730666.1 identified by similarity to GB:AAU93250.1; match to protein family HMM PF04214 YP_730667.1 identified by match to protein family HMM PF00756; match to protein family HMM TIGR02821 YP_730668.1 identified by match to protein family HMM PF00107; match to protein family HMM TIGR02818 YP_730669.1 identified by similarity to GB:CAE21818.1 YP_730670.1 identified by match to protein family HMM PF00535 YP_730673.1 identified by similarity to GB:CAE07970.1 YP_730675.1 identified by similarity to GB:AAP99632.1 YP_730676.1 identified by similarity to GB:CAC18323.1; match to protein family HMM PF00501; match to protein family HMM TIGR01923 YP_730677.1 identified by match to protein family HMM PF00037 YP_730683.1 identified by similarity to GB:CAE19178.1 YP_730687.1 identified by match to protein family HMM PF00924 YP_730688.1 identified by match to protein family HMM PF00005 YP_730694.1 identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732 YP_730695.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383 YP_730696.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_730699.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_730700.1 identified by match to protein family HMM PF02683 YP_730702.1 identified by match to protein family HMM PF00950 YP_730703.1 identified by match to protein family HMM PF00005 YP_730704.1 identified by match to protein family HMM PF01297 YP_730705.1 identified by match to protein family HMM PF00395 YP_730706.1 identified by match to protein family HMM PF00395 YP_730708.1 identified by match to protein family HMM PF06537 YP_730710.1 identified by similarity to GB:AAQ00923.1 YP_730711.1 identified by match to protein family HMM TIGR02246 YP_730713.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_730715.1 identified by match to protein family HMM PF00873 YP_730717.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_730719.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_730721.1 identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976 YP_730727.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01701 YP_730730.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_730731.1 identified by match to protein family HMM TIGR00173 YP_730732.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA YP_730733.1 identified by match to protein family HMM PF03734 YP_730734.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_730736.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143 YP_730737.1 identified by similarity to GB:AAQ00205.1 YP_730738.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_730741.1 identified by similarity to GB:CAE07519.1; match to protein family HMM PF05430 YP_730742.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_730743.1 identified by match to protein family HMM PF00325 YP_730744.1 identified by match to protein family HMM PF00210 YP_730747.1 identified by match to protein family HMM PF00395 YP_730749.1 identified by match to protein family HMM PF03171 YP_730750.1 identified by match to protein family HMM PF01547 YP_730751.1 identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148 YP_730752.1 catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate YP_730753.1 identified by match to protein family HMM PF00795 YP_730754.1 identified by match to protein family HMM PF01520 YP_730755.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00067 YP_730756.1 identified by match to protein family HMM PF00348; match to protein family HMM TIGR02749 YP_730757.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_730758.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR02188 YP_730760.1 identified by similarity to GB:CAE20563.1; match to protein family HMM PF07082 YP_730761.1 identified by match to protein family HMM PF00578 YP_730762.1 identified by match to protein family HMM PF00929 YP_730764.1 identified by similarity to GB:AAQ00075.1 YP_730765.1 identified by match to protein family HMM PF02632 YP_730766.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_730767.1 identified by match to protein family HMM PF00498; match to protein family HMM PF00905; match to protein family HMM PF00912 YP_730768.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231 YP_730769.1 identified by match to protein family HMM PF00282; match to protein family HMM PF01212 YP_730770.1 identified by match to protein family HMM PF00383 YP_730771.1 identified by match to protein family HMM PF00266; spt, agt YP_730772.1 identified by match to protein family HMM PF00502 YP_730774.1 identified by similarity to SP:P05457; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_730776.1 identified by match to protein family HMM PF00036; match to protein family HMM PF03253 YP_730781.1 identified by match to protein family HMM PF01209 YP_730784.1 identified by similarity to GB:CAE20784.1 YP_730785.1 identified by similarity to GB:BAA20429.1 YP_730786.1 identified by match to protein family HMM PF05419 YP_730787.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_730788.1 PsbW; part of the phosystem II reaction center YP_730789.1 identified by match to protein family HMM PF01594 YP_730790.1 identified by match to protein family HMM PF01594 YP_730791.1 identified by match to protein family HMM PF01613 YP_730793.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_730794.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_730795.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_730798.1 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis YP_730799.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_730800.1 identified by match to protein family HMM PF00485 YP_730803.1 identified by match to protein family HMM PF00805 YP_730804.1 identified by similarity to GB:CAE20802.1 YP_730805.1 identified by match to protein family HMM PF02590 YP_730809.1 identified by match to protein family HMM PF01590 YP_730811.1 Contains: UmuD' protein; identified by match to protein family HMM PF00717 YP_730812.1 identified by match to protein family HMM PF00817 YP_730813.1 identified by match to protein family HMM PF01494 YP_730814.1 identified by match to protein family HMM PF03547 YP_730815.1 identified by similarity to GB:CAE20814.1 YP_730816.1 identified by similarity to GB:CAE20815.1 YP_730818.1 synthesizes RNA primers at the replication forks YP_730819.1 identified by match to protein family HMM PF00892 YP_730832.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_730833.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_730834.1 identified by similarity to GB:CAE07548.1 YP_730835.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_730836.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_730838.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_730840.1 identified by match to protein family HMM PF01740 YP_730841.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_730842.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_730843.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_730844.1 identified by similarity to GB:CAE20668.1 YP_730845.1 identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401 YP_730846.1 identified by similarity to GB:AAP99783.1 YP_730853.1 identified by match to protein family HMM PF07883 YP_730854.1 identified by match to protein family HMM PF05193 YP_730855.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_730858.1 identified by similarity to GB:AAP99765.1 YP_730860.1 catalyzes the reduction of biliverdin IX-alpha producing (3Z)-phycocyanobilin and oxidized ferredoxin YP_730862.1 identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185 YP_730863.1 identified by match to protein family HMM PF00005 YP_730864.1 identified by similarity to GB:CAE20761.1 YP_730865.1 identified by match to protein family HMM PF00535 YP_730866.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_730868.1 identified by match to protein family HMM PF01940 YP_730869.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937 YP_730873.1 identified by match to protein family HMM PF00005 YP_730874.1 identified by match to protein family HMM TIGR01098 YP_730875.1 identified by similarity to SP:Q56232; match to protein family HMM PF00155 YP_730877.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_730878.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_730879.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_730881.1 identified by similarity to GB:CAE21289.1 YP_730883.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_730885.1 identified by similarity to GB:CAF30281.1; match to protein family HMM PF07053 YP_730887.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_730888.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163 YP_730889.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_730890.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_730891.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_730892.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_730893.1 identified by match to protein family HMM TIGR01198 YP_730894.1 identified by similarity to GB:CAE07636.1 YP_730895.1 identified by similarity to GB:AAP99890.1 YP_730896.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_730899.1 identified by match to protein family HMM PF00805 YP_730900.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683; match to protein family HMM TIGR02475 YP_730904.1 identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302 YP_730905.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_730907.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_730908.1 identified by match to protein family HMM PF00274 YP_730909.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_730911.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_730913.1 identified by similarity to SP:P31712; match to protein family HMM PF01478; match to protein family HMM PF06750 YP_730914.1 identified by similarity to GB:BAD80348.1 YP_730915.1 identified by match to protein family HMM PF00485 YP_730916.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_730917.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_730918.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_730919.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01668 YP_730920.1 identified by similarity to GB:CAE20702.1 YP_730921.1 identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250 YP_730926.1 identified by match to protein family HMM PF01475 YP_730927.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_730928.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_730929.1 identified by match to protein family HMM PF01066 YP_730930.1 identified by match to protein family HMM PF00571 YP_730932.1 identified by match to protein family HMM PF03734 YP_730936.1 identified by match to protein family HMM PF00149 YP_730938.1 identified by match to protein family HMM PF00497; match to protein family HMM PF07885 YP_730940.1 identified by match to protein family HMM PF00462; match to protein family HMM PF03479 YP_730942.1 identified by similarity to GB:AAP99931.1 YP_730946.1 identified by match to protein family HMM PF00034 YP_730951.1 identified by match to protein family HMM PF01297 YP_730952.1 identified by match to protein family HMM PF00950 YP_730953.1 identified by match to protein family HMM PF00005 YP_730956.1 identified by match to protein family HMM PF03773 YP_730957.1 identified by match to protein family HMM PF00034 YP_730958.1 identified by similarity to GB:CAE20407.1 YP_730960.1 identified by match to protein family HMM PF00950 YP_730961.1 identified by match to protein family HMM PF00005 YP_730962.1 identified by match to protein family HMM PF01297 YP_730963.1 identified by similarity to GB:BAB75622.1 YP_730972.1 identified by match to protein family HMM PF06041 YP_730973.1 identified by similarity to SP:O83756 YP_730974.1 identified by match to protein family HMM PF00535 YP_730975.1 identified by match to protein family HMM PF00080 YP_730980.1 identified by similarity to GB:CAE07903.1; match to protein family HMM PF03733 YP_730983.1 identified by similarity to GB:AAP99858.1 YP_730985.1 identified by similarity to GB:CAE21979.1 YP_730989.1 identified by similarity to GB:AAQ00239.1 YP_730990.1 identified by similarity to GB:CAE07911.1; match to protein family HMM PF04248 YP_730994.1 identified by similarity to GB:AAQ00205.1 YP_731002.1 identified by match to protein family HMM PF01145 YP_731007.1 identified by match to protein family HMM PF02136 YP_731008.1 identified by match to protein family HMM PF00487 YP_731010.1 identified by similarity to GB:AAP99644.1 YP_731011.1 identified by similarity to GB:CAE21396.1; match to protein family HMM PF01925 YP_731015.1 identified by similarity to GB:AAP99701.1; match to protein family HMM PF02586 YP_731016.1 identified by similarity to GB:CAE19456.1 YP_731017.1 identified by match to protein family HMM PF00583 YP_731020.1 identified by match to protein family HMM PF07681 YP_731023.1 identified by match to protein family HMM PF00226 YP_731025.1 identified by similarity to GB:CAE19417.1 YP_731027.1 identified by similarity to GB:CAE21610.1 YP_731028.1 identified by match to protein family HMM PF01243 YP_731033.1 identified by similarity to GB:CAE20369.1; match to protein family HMM PF07864 YP_731034.1 identified by match to protein family HMM PF05899 YP_731035.1 identified by match to protein family HMM PF00355 YP_731036.1 identified by match to protein family HMM PF07386 YP_731037.1 identified by similarity to GB:CAE19449.1 YP_731039.1 identified by match to protein family HMM PF00171 YP_731040.1 identified by match to protein family HMM PF01370 YP_731042.1 identified by similarity to GB:CAE08965.1 YP_731046.1 identified by match to protein family HMM TIGR02450 YP_731047.1 identified by similarity to GB:CAE21191.1 YP_731048.1 identified by match to protein family HMM PF01593 YP_731049.1 identified by match to protein family HMM PF04402 YP_731050.1 identified by match to protein family HMM PF01694 YP_731051.1 identified by similarity to GB:AAQ00440.1 YP_731054.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_731056.1 identified by similarity to GB:CAE21734.1 YP_731057.1 identified by similarity to GB:CAE21451.1 YP_731058.1 identified by match to protein family HMM PF00294 YP_731060.1 identified by match to protein family HMM PF00124; match to protein family HMM TIGR01151 YP_731061.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409 YP_731062.1 identified by match to protein family HMM PF00124; match to protein family HMM TIGR01151 YP_731065.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_731066.1 identified by similarity to GB:CAE20596.1 YP_731067.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_731070.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_731072.1 identified by match to protein family HMM PF02685; match to protein family HMM TIGR00749 YP_731073.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_731074.1 shuttles electrons from NAD(P)H, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunit D, with NdhB and NdhF are core membrane components YP_731075.1 identified by match to protein family HMM PF01432 YP_731078.1 identified by similarity to GB:CAE20607.1 YP_731081.1 identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526 YP_731082.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_731083.1 identified by match to protein family HMM PF00480 YP_731084.1 identified by match to protein family HMM PF04357 YP_731087.1 identified by similarity to GB:CAE20616.1 YP_731088.1 identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976 YP_731090.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_731091.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_731092.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_731093.1 participates in electron transfer in photosystem I YP_731094.1 identified by match to protein family HMM PF00034 YP_731100.1 identified by similarity to GB:AAP99525.1 YP_731101.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_731103.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis YP_731106.1 identified by match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM TIGR02937 YP_731107.1 identified by match to protein family HMM PF06803 YP_731108.1 identified by similarity to GB:CAE20633.1 YP_731109.1 identified by similarity to GB:CAE20634.1 YP_731113.1 unknown function; YciI from Haemophilus influenzae has a crystal structure similar to a muconolactone isomerase, but does not seem to catalyze any of the reactions predicted from the sequence or structure similarity YP_731114.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_731117.1 identified by similarity to GB:BAC89054.1 YP_731118.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_731119.1 identified by match to protein family HMM PF07681 YP_731121.1 identified by match to protein family HMM PF00106 YP_731125.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_731126.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740 YP_731127.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367 YP_731130.1 identified by match to protein family HMM PF00116; match to protein family HMM PF02790 YP_731131.1 identified by match to protein family HMM PF00115 YP_731133.1 identified by match to protein family HMM PF05199 YP_731134.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_731136.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_731137.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_731139.1 identified by match to protein family HMM PF00535 YP_731140.1 identified by match to protein family HMM PF00583 YP_731142.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_731143.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_731144.1 identified by match to protein family HMM PF00753 YP_731145.1 identified by match to protein family HMM PF00005 YP_731146.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_731147.1 identified by similarity to GB:CAE21371.1 YP_731148.1 identified by match to protein family HMM PF00004; match to protein family HMM TIGR02880 YP_731153.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_731154.1 identified by match to protein family HMM PF03486; match to protein family HMM PF07992 YP_731156.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008 YP_731160.1 identified by match to protein family HMM TIGR01964 YP_731161.1 identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972 YP_731162.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_731163.1 identified by match to protein family HMM PF00936 YP_731165.1 identified by match to protein family HMM PF03319; match to protein family HMM TIGR02704 YP_731166.1 identified by match to protein family HMM PF03319; match to protein family HMM TIGR02703 YP_731167.1 identified by match to protein family HMM TIGR02701 YP_731169.1 identified by match to protein family HMM PF00101 YP_731170.1 type III RuBisCO; involved in carbon fixation YP_731171.1 identified by match to protein family HMM PF00936 YP_731172.1 identified by match to protein family HMM PF01725 YP_731173.1 identified by similarity to GB:CAE19006.1 YP_731174.1 identified by similarity to GB:CAE21384.1 YP_731176.1 light-independent reduction of protochlorophyllide to form chlorophyllide a YP_731177.1 light-independent reduction of protochlorophyllide to form chlorophyllide a YP_731178.1 light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production YP_731179.1 Converts chlorophyllide a into protochlorophyllide; light dependent YP_731181.1 identified by match to protein family HMM TIGR03053 YP_731184.1 identified by match to protein family HMM PF01925 YP_731185.1 identified by match to protein family HMM PF03099 YP_731186.1 identified by match to protein family HMM PF02163 YP_731187.1 identified by match to protein family HMM PF00697 YP_731189.1 identified by match to protein family HMM PF01227; match to protein family HMM TIGR00063 YP_731190.1 identified by match to protein family HMM PF00106 YP_731191.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_731193.1 identified by similarity to GB:CAE21406.1 YP_731194.1 identified by match to protein family HMM PF02633 YP_731196.1 identified by match to protein family HMM PF00575 YP_731197.1 identified by match to protein family HMM PF06485 YP_731198.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_731199.1 identified by match to protein family HMM PF01266 YP_731202.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_731203.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_731204.1 identified by match to protein family HMM PF00589 YP_731205.1 identified by match to protein family HMM PF01209; match to protein family HMM PF05724 YP_731206.1 identified by match to protein family HMM PF02572; match to protein family HMM TIGR00708 YP_731207.1 Catalyzes the phosphorylation of UMP to UDP YP_731208.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_731209.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF03486; match to protein family HMM PF04820; match to protein family HMM PF07992; match to protein family HMM TIGR02032 YP_731210.1 identified by match to protein family HMM PF00875; match to protein family HMM PF03441 YP_731211.1 maintains the balance of metabolites in the pentose-phosphate pathway YP_731212.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_731213.1 identified by similarity to GB:CAE21425.1 YP_731214.1 identified by match to protein family HMM PF02517 YP_731215.1 identified by match to protein family HMM PF00300 YP_731217.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_731219.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_731220.1 identified by match to protein family HMM PF00111 YP_731221.1 identified by match to protein family HMM PF00719 YP_731224.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_731225.1 identified by match to protein family HMM TIGR03044 YP_731226.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_731227.1 identified by match to protein family HMM PF00294 YP_731228.1 identified by match to protein family HMM PF02571; match to protein family HMM TIGR00715 YP_731229.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_731231.1 identified by similarity to GB:CAE08294.1 YP_731232.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_731234.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00595 YP_731235.1 identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02393; match to protein family HMM TIGR02937 YP_731239.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_731240.1 identified by match to protein family HMM PF03734 YP_731242.1 identified by match to protein family HMM PF00719 YP_731243.1 identified by match to protein family HMM PF02074 YP_731247.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction YP_731248.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_731251.1 identified by match to protein family HMM PF00528 YP_731254.1 identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299 YP_731259.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_731260.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_731261.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_731263.1 identified by similarity to GB:CAE21988.1 YP_731264.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_731280.1 identified by similarity to GB:CAE20647.1 YP_731283.1 identified by match to protein family HMM PF00171 YP_731288.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_731289.1 identified by match to protein family HMM PF00459 YP_731290.1 identified by similarity to SP:P50849; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_731291.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_731292.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_731293.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_731294.1 identified by similarity to PIR:S74693 YP_731295.1 identified by match to protein family HMM PF00004 YP_731296.1 identified by match to protein family HMM PF02620 YP_731297.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_731300.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_731302.1 identified by similarity to SP:P19080; match to protein family HMM PF07736; match to protein family HMM TIGR01796 YP_731303.1 identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706 YP_731304.1 identified by match to protein family HMM PF00892 YP_731305.1 identified by match to protein family HMM PF00534 YP_731306.1 identified by match to protein family HMM PF02366 YP_731308.1 identified by match to protein family HMM PF04012 YP_731309.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_731310.1 identified by match to protein family HMM PF00155 YP_731311.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121 YP_731312.1 identified by match to protein family HMM PF01551 YP_731313.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_731314.1 identified by match to protein family HMM PF00005 YP_731315.1 transfers electrons from NAD(P)H to quinons in the respiratory chain YP_731316.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_731319.1 identified by similarity to GB:CAE21526.1 YP_731320.1 identified by match to protein family HMM PF02277; match to protein family HMM TIGR00303 YP_731322.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00248 YP_731323.1 identified by similarity to GB:CAE08381.1; match to protein family HMM PF02577 YP_731324.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_731328.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891 YP_731329.1 identified by match to protein family HMM PF00116; match to protein family HMM PF02790; match to protein family HMM TIGR02866 YP_731330.1 identified by match to protein family HMM PF02628 YP_731331.1 converts protoheme IX and farnesyl diphosphate to heme O YP_731332.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01188 YP_731333.1 identified by match to protein family HMM PF01061 YP_731335.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate YP_731337.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth YP_731339.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM TIGR01830 YP_731340.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885 YP_731342.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_731343.1 identified by match to protein family HMM PF02016 YP_731344.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin YP_731345.1 identified by match to protein family HMM PF02541 YP_731346.1 identified by similarity to GB:BAD78682.1 YP_731347.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_731348.1 identified by match to protein family HMM PF01790; match to protein family HMM TIGR00544 YP_731349.1 cytochrome f, with cytochrome b6, subunit IV, and the Rieske protein, makes up the large subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I YP_731350.1 Rieske protein, with cytochrome b6, cytochrome f, and subunit IV, makes up the large subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I YP_731352.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_731353.1 identified by match to protein family HMM PF05670; match to protein family HMM PF05833 YP_731354.1 Essential for recycling GMP and indirectly, cGMP YP_731355.1 Enables the organization of the psaE and psaF subunits YP_731356.1 identified by match to protein family HMM PF02507 YP_731357.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_731359.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_731360.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_731361.1 identified by match to protein family HMM PF07799 YP_731363.1 identified by match to protein family HMM PF00999 YP_731364.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_731367.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_731368.1 identified by match to protein family HMM PF03929 YP_731369.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential YP_731370.1 identified by match to protein family HMM PF00106 YP_731371.1 identified by match to protein family HMM PF07085 YP_731389.1 identified by match to protein family HMM PF00749 YP_731390.1 identified by similarity to SP:P08821; match to protein family HMM PF00216 YP_731392.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922 YP_731393.1 identified by match to protein family HMM PF07690 YP_731394.1 identified by match to protein family HMM PF02405 YP_731395.1 identified by similarity to GB:CAE20653.1 YP_731397.1 identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023 YP_731398.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_731399.1 identified by match to protein family HMM PF03758 YP_731401.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_731403.1 identified by match to protein family HMM PF00196 YP_731406.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_731408.1 identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401 YP_731409.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_731410.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_731411.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_731412.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_731413.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244 YP_731414.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_731416.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_731417.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_731418.1 acts as a promotor non-specific transcription repressor YP_731419.1 Decreases the phosphorylation of KaiC, a component of the main circadian regulator in cyanobacteria YP_731420.1 identified by match to protein family HMM PF07688 YP_731421.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_731422.1 involved in the peptidyltransferase reaction during translation YP_731426.1 identified by match to protein family HMM PF03130 YP_731427.1 identified by match to protein family HMM PF00165 YP_731430.1 identified by similarity to GB:CAE07060.1 YP_731431.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_731432.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_731435.1 identified by match to protein family HMM PF07883 YP_731439.1 identified by match to protein family HMM PF00583 YP_731443.1 identified by match to protein family HMM PF01968; match to protein family HMM PF02538; match to protein family HMM PF05378 YP_731444.1 identified by match to protein family HMM PF01182 YP_731446.1 identified by match to protein family HMM TIGR02669 YP_731447.1 identified by match to protein family HMM TIGR02651 YP_731448.1 low-potential cytochrome C; with PsbO, PsbP, PsbQ, and PsbU makes up the oxygen-evolving complex of photosystem II YP_731449.1 identified by match to protein family HMM PF00427 YP_731450.1 identified by similarity to GB:AAQ00497.1 YP_731452.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008 YP_731453.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_731454.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_731456.1 identified by match to protein family HMM PF01479 YP_731457.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_731462.1 identified by similarity to GB:CAE21614.1; match to protein family HMM PF04543 YP_731465.1 identified by similarity to GB:CAE21616.1 YP_731466.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and subunit alphas YP_731472.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_731473.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_731474.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_731477.1 identified by match to protein family HMM PF00909 YP_731479.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_731480.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_731481.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_731482.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_731483.1 identified by match to protein family HMM PF04839 YP_731484.1 identified by match to protein family HMM PF00923 YP_731485.1 identified by match to protein family HMM TIGR01548 YP_731486.1 identified by match to protein family HMM PF01699 YP_731487.1 identified by similarity to SP:P15034; match to protein family HMM PF00557; match to protein family HMM PF05195 YP_731488.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595 YP_731489.1 identified by match to protein family HMM PF01926 YP_731490.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_731491.1 identified by match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552 YP_731492.1 identified by match to protein family HMM PF01262; match to protein family HMM PF02826; match to protein family HMM PF05222; match to protein family HMM TIGR00518 YP_731496.1 identified by match to protein family HMM PF06298 YP_731503.1 identified by match to protein family HMM PF00421; match to protein family HMM TIGR03041 YP_731504.1 identified by match to protein family HMM PF02810 YP_731507.1 identified by match to protein family HMM PF00111 YP_731508.1 identified by match to protein family HMM TIGR02466 YP_731509.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_731510.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_731511.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit delta is part of the catalytic core of the ATP synthase complex YP_731512.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel. YP_731513.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_731514.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_731515.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_731518.1 identified by match to protein family HMM PF00427; match to protein family HMM PF00502 YP_731520.1 identified by match to protein family HMM PF00502 YP_731521.1 identified by match to protein family HMM PF00502; match to protein family HMM TIGR01337 YP_731522.1 identified by match to protein family HMM PF01383 YP_731523.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614 YP_731524.1 identified by match to protein family HMM PF02683 YP_731525.1 identified by match to protein family HMM PF05140 YP_731526.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_731527.1 identified by similarity to GB:AAQ00659.1 YP_731528.1 identified by match to protein family HMM PF00543 YP_731529.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_731530.1 identified by similarity to GB:CAE21658.1 YP_731531.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_731533.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_731534.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF08148 YP_731535.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00202; match to protein family HMM TIGR00858 YP_731538.1 identified by match to protein family HMM TIGR00347 YP_731540.1 identified by match to protein family HMM PF00202 YP_731541.1 identified by similarity to GB:AAQ00671.1 YP_731542.1 identified by match to protein family HMM PF00226 YP_731543.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_731544.1 identified by match to protein family HMM PF00248 YP_731546.1 identified by match to protein family HMM PF06868 YP_731548.1 identified by match to protein family HMM PF02985; match to protein family HMM PF03130 YP_731550.1 identified by match to protein family HMM PF00474 YP_731551.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_731553.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_731554.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_731555.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; subunit beta is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_731557.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_731558.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_731559.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_731560.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_731561.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_731565.1 identified by match to protein family HMM PF04055 YP_731567.1 identified by match to protein family HMM PF02576 YP_731568.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_731569.1 identified by similarity to GB:CAE21702.1; match to protein family HMM PF04296 YP_731570.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_731572.1 identified by similarity to GB:AAQ00694.1 YP_731573.1 identified by match to protein family HMM PF00156 YP_731575.1 identified by match to protein family HMM PF02069 YP_731576.1 identified by match to protein family HMM PF04087 YP_731578.1 identified by match to protein family HMM PF00106 YP_731580.1 identified by match to protein family HMM PF00124; match to protein family HMM TIGR01151 YP_731583.1 identified by similarity to GB:CAE21710.1 YP_731584.1 identified by similarity to GB:BAC10020.1 YP_731585.1 catalyzes the conversion of N-acetyl_L-aspartic acid (NAA) to aspartate and acetate YP_731586.1 identified by match to protein family HMM PF00043 YP_731588.1 identified by match to protein family HMM PF00005 YP_731589.1 identified by match to protein family HMM PF02672 YP_731590.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_731591.1 identified by match to protein family HMM PF00005 YP_731592.1 Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.; identified by match to protein family HMM PF00488; match to protein family HMM PF01713; match to protein family HMM TIGR01069 YP_731593.1 identified by match to protein family HMM PF00903 YP_731594.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_731595.1 identified by match to protein family HMM PF00226; match to protein family HMM PF01556 YP_731597.1 identified by match to protein family HMM PF00916; match to protein family HMM PF01740 YP_731600.1 identified by similarity to GB:CAE20369.1; match to protein family HMM PF07864 YP_731601.1 identified by match to protein family HMM PF03734 YP_731605.1 identified by match to protein family HMM PF02195 YP_731610.1 identified by match to protein family HMM PF00589 YP_731620.1 identified by match to protein family HMM PF00067 YP_731622.1 identified by match to protein family HMM PF02069 YP_731633.1 identified by match to protein family HMM PF01925 YP_731637.1 identified by similarity to GB:CAE21742.1; match to protein family HMM PF05656 YP_731643.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_731645.1 identified by match to protein family HMM PF01170 YP_731646.1 identified by similarity to GB:CAE21755.1 YP_731647.1 identified by similarity to GB:CAE21756.1; match to protein family HMM PF05957 YP_731649.1 identified by match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02169 YP_731650.1 identified by match to protein family HMM PF05239 YP_731651.1 identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357 YP_731652.1 identified by similarity to GB:CAE21762.1 YP_731653.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_731654.1 identified by similarity to GB:CAE06850.1; match to protein family HMM PF02325 YP_731655.1 identified by match to protein family HMM PF06596 YP_731656.1 identified by similarity to GB:CAE21766.1; match to protein family HMM PF07444 YP_731660.1 identified by match to protein family HMM PF00005; match to protein family HMM PF06472 YP_731661.1 identified by match to protein family HMM PF01230 YP_731662.1 identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368 YP_731664.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_731666.1 identified by similarity to PIR:AI2190 YP_731667.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_731668.1 identified by match to protein family HMM PF00326 YP_731669.1 identified by match to protein family HMM PF00596 YP_731670.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway YP_731672.1 identified by match to protein family HMM PF07566 YP_731674.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979 YP_731675.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981 YP_731676.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_731677.1 with SufCD activates cysteine desulfurase SufS YP_731678.1 identified by match to protein family HMM PF02943 YP_731679.1 identified by similarity to GB:CAE21782.1; match to protein family HMM TIGR02702 YP_731680.1 identified by similarity to GB:AAP99133.1 YP_731682.1 identified by similarity to SP:P29986; match to protein family HMM PF00427 YP_731683.1 identified by match to protein family HMM PF07498 YP_731685.1 identified by match to protein family HMM PF00614 YP_731686.1 identified by match to protein family HMM PF05982 YP_731690.1 identified by similarity to GB:CAE21787.1 YP_731693.1 identified by similarity to GB:CAE21787.1 YP_731694.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_731696.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_731697.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_731698.1 identified by match to protein family HMM PF00004 YP_731701.1 identified by match to protein family HMM PF01648 YP_731702.1 identified by similarity to SP:P23480; match to protein family HMM PF00578 YP_731703.1 identified by match to protein family HMM TIGR00671 YP_731704.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_731705.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_731706.1 identified by match to protein family HMM PF01926 YP_731708.1 identified by match to protein family HMM PF02386 YP_731709.1 identified by match to protein family HMM PF02254 YP_731710.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_731716.1 identified by match to protein family HMM PF00005 YP_731717.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_731719.1 identified by similarity to GB:AAP99155.1 YP_731721.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM TIGR01970 YP_731724.1 identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237 YP_731728.1 identified by match to protein family HMM PF03631 YP_731729.1 identified by match to protein family HMM PF00459 YP_731730.1 identified by match to protein family HMM PF02321 YP_731731.1 identified by match to protein family HMM PF04459 YP_731732.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_731733.1 identified by similarity to GB:CAE20354.1 YP_731734.1 stabilizes and protects the oxygen-evolving complex of photosystem II against heat-induced inactivation YP_731735.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00551 YP_731736.1 identified by match to protein family HMM PF07884 YP_731737.1 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125 YP_731738.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_731740.1 identified by match to protein family HMM PF02310; match to protein family HMM PF04055 YP_731741.1 identified by similarity to GB:CAE08712.1 YP_731742.1 identified by match to protein family HMM PF04339 YP_731744.1 identified by match to protein family HMM PF01872 YP_731745.1 identified by match to protein family HMM PF01242 YP_731746.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_731750.1 identified by match to protein family HMM PF05421 YP_731751.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_731752.1 identified by match to protein family HMM PF00933 YP_731753.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_731754.1 identified by match to protein family HMM PF02602 YP_731756.1 identified by match to protein family HMM PF03364 YP_731757.1 identified by match to protein family HMM PF01593; match to protein family HMM TIGR02732 YP_731758.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049 YP_731760.1 identified by similarity to GB:CAE22145.1 YP_731762.1 identified by match to protein family HMM PF01370; match to protein family HMM TIGR01777 YP_731763.1 identified by match to protein family HMM PF00999 YP_731764.1 identified by similarity to GB:CAE08734.1 YP_731765.1 identified by match to protein family HMM PF00226 YP_731766.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_731768.1 identified by match to protein family HMM PF00395 YP_731770.1 identified by match to protein family HMM PF00395 YP_731775.1 identified by match to protein family HMM PF00124; match to protein family HMM TIGR01152 YP_731776.1 identified by similarity to GB:CAE22160.1 YP_731777.1 identified by match to protein family HMM PF00005 YP_731779.1 identified by similarity to GB:AAD30120.2; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_731780.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the subunit beta on the DNA YP_731781.1 identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041 YP_731782.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_731783.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_731784.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_731785.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_731786.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_731787.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_731788.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_731789.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530 YP_731790.1 identified by match to protein family HMM PF02698 YP_731791.1 identified by match to protein family HMM PF00814 YP_731793.1 identified by match to protein family HMM PF01743 YP_731794.1 identified by match to protein family HMM PF00076 YP_731795.1 identified by match to protein family HMM PF00494 YP_731796.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02731 YP_731799.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_731801.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_731802.1 Shuttles electrons from NAD(P)H, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain YP_731804.1 identified by match to protein family HMM PF02616 YP_731805.1 identified by match to protein family HMM PF00483 YP_731806.1 identified by match to protein family HMM PF02219 YP_731807.1 identified by match to protein family HMM PF00196 YP_731808.1 identified by match to protein family HMM PF01928 YP_731809.1 catalyzes the phosphorylation of NAD to NADP YP_731810.1 Catalyzes the transfer of electrons from NADH to quinone YP_731811.1 Catalyzes the transfer of electrons from NADH to quinone YP_731812.1 Catalyzes the transfer of electrons from NADH to quinone YP_731813.1 Catalyzes the transfer of electrons from NADH to quinone YP_731814.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate YP_731815.1 identified by match to protein family HMM PF00300 YP_731818.1 identified by match to protein family HMM PF01628 YP_731819.1 identified by match to protein family HMM PF01094 YP_731821.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_731823.1 identified by match to protein family HMM PF01253 YP_731824.1 identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_731825.1 identified by match to protein family HMM PF01594 YP_731826.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_731828.1 catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine YP_731829.1 identified by match to protein family HMM PF00849 YP_731830.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_731831.1 identified by similarity to GB:CAE22218.1 YP_731832.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212 YP_731835.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_731836.1 shuttles electrons from NAD(P)H, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradien YP_731838.1 identified by match to protein family HMM PF03061 YP_731840.1 identified by match to protein family HMM PF05154 YP_731841.1 identified by match to protein family HMM TIGR01923 YP_731843.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate YP_731844.1 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543 YP_731845.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_731846.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181 YP_731847.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1 YP_731848.1 identified by similarity to GB:CAE22238.1 YP_731849.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_731850.1 identified by match to protein family HMM PF01219 YP_731851.1 identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566 YP_731853.1 identified by match to protein family HMM PF00710 YP_731854.1 identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141 YP_731855.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_731857.1 identified by match to protein family HMM PF00465 YP_731858.1 identified by match to protein family HMM PF03992 YP_731859.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_731867.1 identified by match to protein family HMM PF01425 YP_731869.1 identified by match to protein family HMM PF01569 YP_731873.1 identified by match to protein family HMM PF00924 YP_731880.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078 YP_731881.1 identified by match to protein family HMM PF04909 YP_731884.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_731887.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_731889.1 identified by match to protein family HMM PF02696 YP_731890.1 identified by similarity to SP:O54408; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_731891.1 identified by match to protein family HMM PF00005 YP_731894.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_731895.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_731896.1 identified by match to protein family HMM PF00582 YP_731897.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_731900.1 identified by match to protein family HMM PF02153; match to protein family HMM PF03446 YP_731902.1 identified by match to protein family HMM PF03033; match to protein family HMM PF04101; match to protein family HMM TIGR01133 YP_731903.1 identified by similarity to GB:AAC79515.1; match to protein family HMM PF00155; match to protein family HMM TIGR01140 YP_731904.1 identified by match to protein family HMM PF00805 YP_731905.1 identified by match to protein family HMM PF00263; match to protein family HMM PF07660 YP_731907.1 identified by match to protein family HMM PF05137 YP_731909.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_731910.1 identified by match to protein family HMM PF00075 YP_731912.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_731913.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_731914.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_731915.1 binds directly to 23S ribosomal RNA YP_731916.1 Modulates Rho-dependent transcription termination YP_731917.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_731918.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_731919.1 identified by match to protein family HMM PF00903; match to protein family HMM TIGR00068 YP_731920.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_731921.1 identified by match to protein family HMM PF03109 YP_731922.1 identified by similarity to GB:CAE22255.1 YP_731924.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_731925.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_731927.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_731928.1 identified by match to protein family HMM PF01266; match to protein family HMM TIGR02352 YP_731929.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_731930.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis YP_731931.1 identified by similarity to GB:AAL83098.1 YP_731932.1 identified by match to protein family HMM PF00027 YP_731933.1 identified by match to protein family HMM PF00211; match to protein family HMM PF05226 YP_731953.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_731954.1 identified by match to protein family HMM PF00873 YP_731955.1 identified by match to protein family HMM TIGR01730 YP_731956.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_731958.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271 YP_731959.1 identified by match to protein family HMM PF04434 YP_731963.1 identified by match to protein family HMM PF00011 YP_731964.1 identified by match to protein family HMM PF03480 YP_731965.1 identified by match to protein family HMM PF04290 YP_731966.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_731967.1 identified by match to protein family HMM PF00753; match to protein family HMM PF01613 YP_731968.1 identified by match to protein family HMM PF00258; match to protein family HMM PF01613 YP_731969.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_731970.1 identified by match to protein family HMM PF01638 YP_731971.1 identified by match to protein family HMM PF03358 YP_731972.1 identified by match to protein family HMM PF02678 YP_731974.1 identified by similarity to GB:AAP99088.1 YP_731975.1 identified by similarity to GB:AAQ00872.1 YP_731976.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_731977.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_731978.1 identified by similarity to GB:AAB99854.1; match to protein family HMM PF01053; match to protein family HMM PF06838 YP_731979.1 identified by match to protein family HMM PF00487 YP_731980.1 identified by similarity to GB:CAE22347.1 YP_731981.1 identified by match to protein family HMM PF00487 YP_731982.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_731983.1 identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665 YP_731984.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_731986.1 identified by match to protein family HMM PF01551 YP_731989.1 identified by similarity to GB:CAE22353.1 YP_731990.1 identified by similarity to GB:CAE22354.1 YP_731993.1 identified by similarity to GB:CAE22357.1 YP_731994.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_731995.1 identified by match to protein family HMM PF04087 YP_731997.1 identified by match to protein family HMM PF00597 YP_732000.1 identified by match to protein family HMM PF00924 YP_732001.1 identified by match to protein family HMM PF06182 YP_732003.1 identified by match to protein family HMM PF00005 YP_732006.1 identified by match to protein family HMM PF00924 YP_732008.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_732012.1 identified by match to protein family HMM PF00924 YP_732013.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_732018.1 identified by match to protein family HMM PF00106 YP_732019.1 identified by match to protein family HMM PF01475 YP_732024.1 identified by similarity to GB:AAQ00205.1 YP_732029.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008 YP_732033.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era YP_732034.1 identified by match to protein family HMM PF00472 YP_732037.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_732038.1 identified by similarity to SP:P70999; match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_732040.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_732041.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_732042.1 identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_732043.1 identified by match to protein family HMM PF00210 YP_732044.1 identified by match to protein family HMM PF00106 YP_732045.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_732048.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846 YP_732049.1 identified by match to protein family HMM PF00529 YP_732051.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_732052.1 identified by match to protein family HMM PF00425 YP_732053.1 identified by match to protein family HMM PF01063 YP_732054.1 identified by match to protein family HMM PF00324 YP_732055.1 identified by match to protein family HMM PF00005 YP_732056.1 identified by match to protein family HMM PF00005 YP_732057.1 identified by match to protein family HMM PF02653 YP_732058.1 identified by match to protein family HMM PF02653 YP_732059.1 identified by similarity to GB:CAB70948.1 YP_732060.1 identified by similarity to SP:P18319; match to protein family HMM PF02492; match to protein family HMM TIGR00101 YP_732061.1 identified by match to protein family HMM PF01730 YP_732062.1 involved in the assembly of the urease metallocenter; nickel donor YP_732063.1 identified by similarity to SP:Q09063; match to protein family HMM PF01774 YP_732064.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_732065.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active YP_732066.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_732067.1 identified by match to protein family HMM PF00117 YP_732068.1 identified by similarity to GB:CAE08971.1; match to protein family HMM PF04169; match to protein family HMM PF04174 YP_732069.1 identified by match to protein family HMM PF04168 YP_732070.1 identified by match to protein family HMM PF01841 YP_732072.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666 YP_732074.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886 YP_732075.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568 YP_732076.1 identified by match to protein family HMM TIGR02664 YP_732078.1 identified by match to protein family HMM PF01967; match to protein family HMM TIGR00581 YP_732079.1 identified by similarity to SP:P12281; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_732080.1 identified by match to protein family HMM PF02391 YP_732081.1 identified by match to protein family HMM PF02597 YP_732083.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469 YP_732085.1 ferredoxin-dependent assimilatory nitrite reductase YP_732086.1 identified by match to protein family HMM PF01226 YP_732088.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide YP_732091.1 identified by match to protein family HMM PF00591; match to protein family HMM PF02885 YP_732092.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_732093.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_732094.1 identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_732095.1 identified by match to protein family HMM PF01148 YP_732096.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_732097.2 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_732098.1 identified by match to protein family HMM PF00654 YP_732101.1 identified by match to protein family HMM PF00082; match to protein family HMM PF03160 YP_732102.1 identified by match to protein family HMM PF04055 YP_732103.1 identified by match to protein family HMM PF04932 YP_732104.1 identified by match to protein family HMM PF00551; match to protein family HMM TIGR00655 YP_732105.1 identified by match to protein family HMM TIGR03042 YP_732106.1 identified by match to protein family HMM PF01266 YP_732107.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975 YP_732108.1 identified by match to protein family HMM PF01757 YP_732110.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_732111.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_732113.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_732114.1 identified by similarity to GB:CAE22434.1 YP_732115.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_732118.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_732120.1 identified by similarity to GB:CAE22440.1 YP_732122.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_732123.1 identified by match to protein family HMM PF00534; match to protein family HMM TIGR02471; match to protein family HMM TIGR02472 YP_732126.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_732127.1 identified by match to protein family HMM TIGR00634 YP_732128.1 identified by match to protein family HMM PF03109 YP_732130.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine