-- dump date 20120504_160013 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_473497.1 86604734 3897189 71..1474 1 NC_007775.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1474 dnaA 3897189 dnaA Synechococcus sp. JA-3-3Ab chromosomal replication initiation protein YP_473497.1 71 D 321327 CDS YP_473498.1 86604735 3897190 1645..2334 1 NC_007775.1 hypothetical protein 2334 3897190 CYA_0003 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473498.1 1645 D 321327 CDS YP_473499.1 86604736 3897191 complement(2331..3152) 1 NC_007775.1 identified by similarity to GB:AAS82375.1; hypothetical protein 3152 3897191 CYA_0002 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473499.1 2331 R 321327 CDS YP_473500.1 86604737 3897192 complement(3256..5142) 1 NC_007775.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; FtsH family metalloprotease 5142 3897192 CYA_0004 Synechococcus sp. JA-3-3Ab FtsH family metalloprotease YP_473500.1 3256 R 321327 CDS YP_473501.1 86604738 3897091 complement(5268..6143) 1 NC_007775.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase 6143 3897091 CYA_0005 Synechococcus sp. JA-3-3Ab short chain dehydrogenase/reductase family oxidoreductase YP_473501.1 5268 R 321327 CDS YP_473502.1 86604739 3897092 6134..6247 1 NC_007775.1 hypothetical protein 6247 3897092 CYA_0006 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473502.1 6134 D 321327 CDS YP_473503.1 86604740 3897093 6354..7019 1 NC_007775.1 hypothetical protein 7019 3897093 CYA_0007 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473503.1 6354 D 321327 CDS YP_473504.1 86604741 3897094 complement(7057..9606) 1 NC_007775.1 identified by match to protein family HMM PF00521; match to protein family HMM PF03989; type II DNA topoisomerase, A subunit 9606 3897094 CYA_0008 Synechococcus sp. JA-3-3Ab type II DNA topoisomerase, A subunit YP_473504.1 7057 R 321327 CDS YP_473505.1 86604742 3897095 9806..11209 1 NC_007775.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase family protein 11209 3897095 CYA_0009 Synechococcus sp. JA-3-3Ab phosphoglucomutase/phosphomannomutase family protein YP_473505.1 9806 D 321327 CDS YP_473506.1 86604743 3897096 complement(11268..11660) 1 NC_007775.1 identified by match to protein family HMM PF00903; glyoxalase family protein 11660 3897096 CYA_0010 Synechococcus sp. JA-3-3Ab glyoxalase family protein YP_473506.1 11268 R 321327 CDS YP_473507.1 86604744 3897097 complement(11810..13177) 1 NC_007775.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 13177 thiC 3897097 thiC Synechococcus sp. JA-3-3Ab thiamine biosynthesis protein ThiC YP_473507.1 11810 R 321327 CDS YP_473508.1 86604745 3897098 complement(13486..14220) 1 NC_007775.1 hypothetical protein 14220 3897098 CYA_0012 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473508.1 13486 R 321327 CDS YP_473509.1 86604746 3897099 complement(14217..14957) 1 NC_007775.1 hypothetical protein 14957 3897099 CYA_0013 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473509.1 14217 R 321327 CDS YP_473510.1 86604747 3897100 complement(14998..15462) 1 NC_007775.1 identified by match to protein family HMM PF05419; GUN4-like family protein 15462 3897100 CYA_0014 Synechococcus sp. JA-3-3Ab GUN4-like family protein YP_473510.1 14998 R 321327 CDS YP_473511.1 86604748 3897101 complement(15513..16040) 1 NC_007775.1 hypothetical protein 16040 3897101 CYA_0015 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473511.1 15513 R 321327 CDS YP_473512.1 86604749 3897102 complement(16201..16965) 1 NC_007775.1 identified by similarity to GB:CAE11909.1; gas vesicle protein W 16965 gvpW 3897102 gvpW Synechococcus sp. JA-3-3Ab gas vesicle protein W YP_473512.1 16201 R 321327 CDS YP_473513.1 86604750 3897103 17166..17786 1 NC_007775.1 hypothetical protein 17786 3897103 CYA_0018 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473513.1 17166 D 321327 CDS YP_473514.1 86604751 3897104 complement(17769..18500) 1 NC_007775.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 18500 surE 3897104 surE Synechococcus sp. JA-3-3Ab stationary phase survival protein SurE YP_473514.1 17769 R 321327 CDS YP_473515.1 86604752 3897105 18689..19720 1 NC_007775.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 19720 gap-1 3897105 gap-1 Synechococcus sp. JA-3-3Ab glyceraldehyde-3-phosphate dehydrogenase, type I YP_473515.1 18689 D 321327 CDS YP_473516.1 86604753 3897106 complement(19706..20212) 1 NC_007775.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 20212 folK 3897106 folK Synechococcus sp. JA-3-3Ab 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_473516.1 19706 R 321327 CDS YP_473517.1 86604754 3897107 complement(20219..20590) 1 NC_007775.1 identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; dihydroneopterin aldolase 20590 folB 3897107 folB Synechococcus sp. JA-3-3Ab dihydroneopterin aldolase YP_473517.1 20219 R 321327 CDS YP_473518.1 86604755 3897108 complement(20577..21446) 1 NC_007775.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 21446 folP 3897108 folP Synechococcus sp. JA-3-3Ab dihydropteroate synthase YP_473518.1 20577 R 321327 CDS YP_473519.1 86604756 3897109 complement(21788..21895) 1 NC_007775.1 hypothetical protein 21895 3897109 CYA_0023 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473519.1 21788 R 321327 CDS YP_473520.1 86604757 3897653 complement(22084..23175) 1 NC_007775.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 23175 3897653 CYA_0024 Synechococcus sp. JA-3-3Ab GTP-dependent nucleic acid-binding protein EngD YP_473520.1 22084 R 321327 CDS YP_473521.1 86604758 3897654 complement(23329..24723) 1 NC_007775.1 identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF03602; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA 24723 rumA 3897654 rumA Synechococcus sp. JA-3-3Ab 23S rRNA (uracil-5-)-methyltransferase RumA YP_473521.1 23329 R 321327 CDS YP_473522.1 86604759 3897655 complement(24911..26074) 1 NC_007775.1 identified by match to protein family HMM PF04932; O-antigen polymerase family protein 26074 3897655 CYA_0026 Synechococcus sp. JA-3-3Ab O-antigen polymerase family protein YP_473522.1 24911 R 321327 CDS YP_473523.1 86604760 3897656 complement(26202..26567) 1 NC_007775.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008; ferredoxin, 2Fe-2S 26567 3897656 CYA_0027 Synechococcus sp. JA-3-3Ab ferredoxin, 2Fe-2S YP_473523.1 26202 R 321327 CDS YP_473524.1 86604761 3897657 26693..27145 1 NC_007775.1 identified by match to protein family HMM PF01050; match to protein family HMM PF07883; mannose-6-phosphate isomerase 27145 3897657 CYA_0028 Synechococcus sp. JA-3-3Ab mannose-6-phosphate isomerase YP_473524.1 26693 D 321327 CDS YP_473525.1 86604762 3897658 complement(27153..29534) 1 NC_007775.1 identified by match to protein family HMM PF01435; M48B family peptidase 29534 3897658 CYA_0029 Synechococcus sp. JA-3-3Ab M48B family peptidase YP_473525.1 27153 R 321327 CDS YP_473526.1 86604763 3897659 complement(29715..30161) 1 NC_007775.1 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 30161 3897659 CYA_0030 Synechococcus sp. JA-3-3Ab FUR family transcriptional regulator YP_473526.1 29715 R 321327 CDS YP_473527.1 86604764 3897660 30488..30868 1 NC_007775.1 identified by similarity to PIR:AC2234; hypothetical protein 30868 3897660 CYA_0031 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473527.1 30488 D 321327 CDS YP_473528.1 86604765 3897661 30915..32189 1 NC_007775.1 identified by match to protein family HMM PF02113; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 32189 3897661 CYA_0032 Synechococcus sp. JA-3-3Ab D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_473528.1 30915 D 321327 CDS YP_473529.1 86604766 3897663 32567..33220 1 NC_007775.1 identified by match to protein family HMM PF01169; hypothetical protein 33220 3897663 CYA_0034 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473529.1 32567 D 321327 CDS YP_473530.1 86604767 3897664 33590..34060 1 NC_007775.1 identified by match to protein family HMM PF02605; photosystem I reaction center protein subunit XI 34060 psaL-1 3897664 psaL-1 Synechococcus sp. JA-3-3Ab photosystem I reaction center protein subunit XI YP_473530.1 33590 D 321327 CDS YP_473531.1 86604768 3897665 34110..34223 1 NC_007775.1 identified by match to protein family HMM PF00796; photosystem I reaction center subunit VIII 34223 psaI 3897665 psaI Synechococcus sp. JA-3-3Ab photosystem I reaction center subunit VIII YP_473531.1 34110 D 321327 CDS YP_473532.1 86604769 3897666 34557..34955 1 NC_007775.1 identified by similarity to PIR:AD2038; ISSoc4, transposase orfA 34955 3897666 CYA_0037 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfA YP_473532.1 34557 D 321327 CDS YP_473533.1 86604770 3897667 34937..35488 1 NC_007775.1 identified by similarity to PIR:AI1851; ISSoc4, transposase orfB 35488 3897667 CYA_0038 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfB YP_473533.1 34937 D 321327 CDS YP_473534.1 86604771 3897668 complement(35581..37047) 1 NC_007775.1 hypothetical protein 37047 3897668 CYA_0039 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473534.1 35581 R 321327 CDS YP_473535.1 86604772 3897669 37430..38884 1 NC_007775.1 identified by similarity to SP:P23462; match to protein family HMM PF03209; match to protein family HMM PF07690; bacteriochlorophyll delivery (BCD) family transporter 38884 3897669 CYA_0041 Synechococcus sp. JA-3-3Ab bacteriochlorophyll delivery (BCD) family transporter YP_473535.1 37430 D 321327 CDS YP_473536.1 86604773 3897670 complement(38881..39174) 1 NC_007775.1 hypothetical protein 39174 3897670 CYA_0040 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473536.1 38881 R 321327 CDS YP_473537.1 86604774 3897671 39584..41692 1 NC_007775.1 identified by match to protein family HMM PF00400; WD domain-/G-beta repeat-containing protein 41692 3897671 CYA_0042 Synechococcus sp. JA-3-3Ab WD domain-/G-beta repeat-containing protein YP_473537.1 39584 D 321327 CDS YP_473538.1 86604775 3897749 41742..43040 1 NC_007775.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01593; amine oxidase, flavin-containing 43040 3897749 CYA_0043 Synechococcus sp. JA-3-3Ab amine oxidase, flavin-containing YP_473538.1 41742 D 321327 CDS YP_473539.1 86604776 3897750 43128..43799 1 NC_007775.1 hypothetical protein 43799 3897750 CYA_0044 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473539.1 43128 D 321327 CDS YP_473540.1 86604777 3897751 43925..44719 1 NC_007775.1 hypothetical protein 44719 3897751 CYA_0045 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473540.1 43925 D 321327 CDS YP_473541.1 86604778 3897752 complement(44778..45890) 1 NC_007775.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 45890 mnmA 3897752 mnmA Synechococcus sp. JA-3-3Ab tRNA-specific 2-thiouridylase MnmA YP_473541.1 44778 R 321327 CDS YP_473542.1 86604779 3897753 complement(45989..46711) 1 NC_007775.1 identified by match to protein family HMM PF03130; HEAT repeat-containing PBS lyase 46711 3897753 CYA_0047 Synechococcus sp. JA-3-3Ab HEAT repeat-containing PBS lyase YP_473542.1 45989 R 321327 CDS YP_473543.1 86604780 3897754 46915..47829 1 NC_007775.1 hypothetical protein 47829 3897754 CYA_0048 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473543.1 46915 D 321327 CDS YP_473544.1 86604781 3897755 complement(48013..48570) 1 NC_007775.1 identified by similarity to GB:BAC89600.1; hypothetical protein 48570 3897755 CYA_0049 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473544.1 48013 R 321327 CDS YP_473545.1 86604782 3897756 48908..49837 1 NC_007775.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 49837 3897756 CYA_0050 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473545.1 48908 D 321327 CDS YP_473546.1 86604783 3897757 complement(49892..51004) 1 NC_007775.1 identified by similarity to SP:P42063; match to protein family HMM PF00528; oligopeptide ABC transporter permease 51004 3897757 CYA_0051 Synechococcus sp. JA-3-3Ab oligopeptide ABC transporter permease YP_473546.1 49892 R 321327 CDS YP_473547.1 86604784 3897758 50663..51715 1 NC_007775.1 hypothetical protein 51715 3897758 CYA_0054 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473547.1 50663 D 321327 CDS YP_473548.1 86604785 3897759 complement(51170..51670) 1 NC_007775.1 identified by similarity to PIR:AE2426; hypothetical protein 51670 3897759 CYA_0052 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473548.1 51170 R 321327 CDS YP_473549.1 86604786 3897760 complement(51700..52647) 1 NC_007775.1 identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfAB 52647 3897760 CYA_0053 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfAB YP_473549.1 51700 R 321327 CDS YP_473550.1 86604787 3897761 complement(52802..53860) 1 NC_007775.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476; selenide, water dikinase 53860 selD 3897761 selD Synechococcus sp. JA-3-3Ab selenide, water dikinase YP_473550.1 52802 R 321327 CDS YP_473551.1 86604788 3897762 53979..57464 1 NC_007775.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 57464 dnaE 3897762 dnaE Synechococcus sp. JA-3-3Ab DNA polymerase III subunit alpha YP_473551.1 53979 D 321327 CDS YP_473552.1 86604789 3897763 complement(57450..57725) 1 NC_007775.1 identified by match to protein family HMM PF05768; glutaredoxin family protein 57725 3897763 CYA_0056 Synechococcus sp. JA-3-3Ab glutaredoxin family protein YP_473552.1 57450 R 321327 CDS YP_473553.1 86604790 3897764 complement(57735..58562) 1 NC_007775.1 identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 58562 3897764 CYA_0058 Synechococcus sp. JA-3-3Ab carbon-nitrogen family hydrolase YP_473553.1 57735 R 321327 CDS YP_473554.1 86604791 3897765 complement(58599..58820) 1 NC_007775.1 hypothetical protein 58820 3897765 CYA_0059 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473554.1 58599 R 321327 CDS YP_473555.1 86604792 3897766 complement(59052..59795) 1 NC_007775.1 hypothetical protein 59795 3897766 CYA_0060 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473555.1 59052 R 321327 CDS YP_473556.1 86604793 3897767 complement(59792..60373) 1 NC_007775.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 60373 3897767 CYA_0061 Synechococcus sp. JA-3-3Ab RNA polymerase sigma factor YP_473556.1 59792 R 321327 CDS YP_473557.1 86604794 3897729 complement(60603..61409) 1 NC_007775.1 lipoprotein 61409 3897729 CYA_0062 Synechococcus sp. JA-3-3Ab lipoprotein YP_473557.1 60603 R 321327 CDS YP_473558.1 86604795 3897730 complement(61552..61668) 1 NC_007775.1 hypothetical protein 61668 3897730 CYA_0063 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473558.1 61552 R 321327 CDS YP_473559.1 86604796 3897731 complement(61714..62496) 1 NC_007775.1 identified by match to protein family HMM PF06182; hypothetical protein 62496 3897731 CYA_0064 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473559.1 61714 R 321327 CDS YP_473560.1 86604797 3897732 complement(62514..63257) 1 NC_007775.1 identified by similarity to PIR:AB2146; hypothetical protein 63257 3897732 CYA_0065 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473560.1 62514 R 321327 CDS YP_473561.1 86604798 3897733 complement(63306..63791) 1 NC_007775.1 identified by match to protein family HMM PF00498; FHA domain-containing protein 63791 3897733 CYA_0066 Synechococcus sp. JA-3-3Ab FHA domain-containing protein YP_473561.1 63306 R 321327 CDS YP_473562.1 86604799 3897735 65283..65759 1 NC_007775.1 identified by match to protein family HMM PF01797; ISSoc3, orfA transposase 65759 3897735 CYA_0068 Synechococcus sp. JA-3-3Ab ISSoc3, orfA transposase YP_473562.1 65283 D 321327 CDS YP_473563.1 86604800 3897736 66081..66722 1 NC_007775.1 identified by similarity to PIR:AH1812; hypothetical protein 66722 3897736 CYA_0069 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473563.1 66081 D 321327 CDS YP_473564.1 86604801 3897737 66762..67652 1 NC_007775.1 hypothetical protein 67652 3897737 CYA_0070 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473564.1 66762 D 321327 CDS YP_473565.1 86604802 3897739 68588..69808 1 NC_007775.1 identified by match to protein family HMM PF01494; match to protein family HMM TIGR02023; match to protein family HMM TIGR02028; match to protein family HMM TIGR02032; geranylgeranyl reductase 69808 chlP 3897739 chlP Synechococcus sp. JA-3-3Ab geranylgeranyl reductase YP_473565.1 68588 D 321327 CDS YP_473566.1 86604803 3897740 complement(69815..70660) 1 NC_007775.1 hypothetical protein 70660 3897740 CYA_0073 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473566.1 69815 R 321327 CDS YP_473567.1 86604804 3897741 71021..72367 1 NC_007775.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 72367 secD 3897741 secD Synechococcus sp. JA-3-3Ab preprotein translocase subunit SecD YP_473567.1 71021 D 321327 CDS YP_473568.1 86604805 3897742 72364..73359 1 NC_007775.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 73359 secF 3897742 secF Synechococcus sp. JA-3-3Ab preprotein translocase subunit SecF YP_473568.1 72364 D 321327 CDS YP_473569.1 86604806 3897743 complement(73398..75167) 1 NC_007775.1 hypothetical protein 75167 3897743 CYA_0076 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473569.1 73398 R 321327 CDS YP_473570.1 86604807 3897744 75903..77240 1 NC_007775.1 identified by similarity to SP:P96613; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 77240 murF 3897744 murF Synechococcus sp. JA-3-3Ab UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_473570.1 75903 D 321327 CDS YP_473571.1 86604808 3897745 77338..77559 1 NC_007775.1 identified by similarity to GB:BAC90887.1; hypothetical protein 77559 3897745 CYA_0078 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473571.1 77338 D 321327 CDS YP_473572.1 86604809 3897746 77913..78449 1 NC_007775.1 identified by match to protein family HMM PF02469; fasciclin domain-containing protein 78449 3897746 CYA_0079 Synechococcus sp. JA-3-3Ab fasciclin domain-containing protein YP_473572.1 77913 D 321327 CDS YP_473573.1 86604810 3897747 complement(78557..79003) 1 NC_007775.1 hypothetical protein 79003 3897747 CYA_0080 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473573.1 78557 R 321327 CDS YP_473574.1 86604811 3897748 79112..80905 1 NC_007775.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 80905 menD 3897748 menD Synechococcus sp. JA-3-3Ab 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_473574.1 79112 D 321327 CDS YP_473575.1 86604812 3897110 complement(80829..81851) 1 NC_007775.1 identified by similarity to SP:P16384; match to protein family HMM PF01715; match to protein family HMM TIGR00174; tRNA delta(2)-isopentenylpyrophosphate transferase 81851 miaA 3897110 miaA Synechococcus sp. JA-3-3Ab tRNA delta(2)-isopentenylpyrophosphate transferase YP_473575.1 80829 R 321327 CDS YP_473576.1 86604813 3897111 82003..82824 1 NC_007775.1 identified by similarity to GB:BAC90495.1; hypothetical protein 82824 3897111 CYA_0083 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473576.1 82003 D 321327 CDS YP_473577.1 86604814 3897112 complement(82982..83692) 1 NC_007775.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 83692 rpe 3897112 rpe Synechococcus sp. JA-3-3Ab ribulose-phosphate 3-epimerase YP_473577.1 82982 R 321327 CDS YP_473578.1 86604815 3897113 complement(83852..84037) 1 NC_007775.1 hypothetical protein 84037 3897113 CYA_0085 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473578.1 83852 R 321327 CDS YP_473579.1 86604816 3897114 84185..84595 1 NC_007775.1 identified by match to protein family HMM PF00903; glyoxalase family protein 84595 3897114 CYA_0086 Synechococcus sp. JA-3-3Ab glyoxalase family protein YP_473579.1 84185 D 321327 CDS YP_473580.1 86604817 3897115 84592..86178 1 NC_007775.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; carbohydrate kinase family protein 86178 3897115 CYA_0088 Synechococcus sp. JA-3-3Ab carbohydrate kinase family protein YP_473580.1 84592 D 321327 CDS YP_473581.1 86604818 3897116 complement(86175..87005) 1 NC_007775.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 87005 3897116 CYA_0087 Synechococcus sp. JA-3-3Ab undecaprenyl pyrophosphate phosphatase YP_473581.1 86175 R 321327 CDS YP_473582.1 86604819 3897117 complement(87209..87829) 1 NC_007775.1 identified by similarity to GB:BAC92187.1; hypothetical protein 87829 3897117 CYA_0089 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473582.1 87209 R 321327 CDS YP_473583.1 86604820 3897118 complement(88002..88187) 1 NC_007775.1 identified by match to protein family HMM PF01737; hypothetical protein 88187 3897118 CYA_0090 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473583.1 88002 R 321327 CDS YP_473584.1 86604821 3897119 complement(88306..89487) 1 NC_007775.1 identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase 89487 3897119 CYA_0091 Synechococcus sp. JA-3-3Ab ISSoc1, transposase YP_473584.1 88306 R 321327 CDS YP_473585.1 86604822 3897120 complement(89675..90367) 1 NC_007775.1 identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein 90367 3897120 CYA_0092 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473585.1 89675 R 321327 CDS YP_473586.1 86604823 3897121 complement(90367..91023) 1 NC_007775.1 identified by match to protein family HMM PF00072; response regulator 91023 3897121 CYA_0093 Synechococcus sp. JA-3-3Ab response regulator YP_473586.1 90367 R 321327 CDS YP_473587.1 86604824 3897122 91262..92380 1 NC_007775.1 identified by match to protein family HMM PF01209; UbiE/COQ5 family methlytransferase 92380 3897122 CYA_0094 Synechococcus sp. JA-3-3Ab UbiE/COQ5 family methlytransferase YP_473587.1 91262 D 321327 CDS YP_473588.1 86604825 3897123 92497..92991 1 NC_007775.1 hypothetical protein 92991 3897123 CYA_0095 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473588.1 92497 D 321327 CDS YP_473589.1 86604826 3897124 93105..93449 1 NC_007775.1 identified by similarity to PIR:AH1833; hypothetical protein 93449 3897124 CYA_0096 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473589.1 93105 D 321327 CDS YP_473590.1 86604827 3897125 93643..95199 1 NC_007775.1 identified by match to protein family HMM PF07690; major facilitator transporter 95199 3897125 CYA_0097 Synechococcus sp. JA-3-3Ab major facilitator transporter YP_473590.1 93643 D 321327 CDS YP_473591.1 86604828 3897126 95249..95350 1 NC_007775.1 hypothetical protein 95350 3897126 CYA_0098 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473591.1 95249 D 321327 CDS YP_473592.1 86604829 3897127 95382..96572 1 NC_007775.1 identified by match to protein family HMM PF00534; group 1 glycosyl transferase 96572 3897127 CYA_0099 Synechococcus sp. JA-3-3Ab group 1 glycosyl transferase YP_473592.1 95382 D 321327 CDS YP_473593.1 86604830 3897128 96917..98413 1 NC_007775.1 identified by match to protein family HMM PF01590; match to protein family HMM PF07228; GAF/SpoIIE domain-containing protein 98413 3897128 CYA_0100 Synechococcus sp. JA-3-3Ab GAF/SpoIIE domain-containing protein YP_473593.1 96917 D 321327 CDS YP_473594.1 86604831 3897860 98507..98725 1 NC_007775.1 hypothetical protein 98725 3897860 CYA_0102 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473594.1 98507 D 321327 CDS YP_473595.1 86604832 3897861 complement(98709..98816) 1 NC_007775.1 hypothetical protein 98816 3897861 CYA_0101 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473595.1 98709 R 321327 CDS YP_473596.1 86604833 3897862 98857..100326 1 NC_007775.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 100326 argH 3897862 argH Synechococcus sp. JA-3-3Ab argininosuccinate lyase YP_473596.1 98857 D 321327 CDS YP_473597.1 86604834 3897863 100418..101038 1 NC_007775.1 hypothetical protein 101038 3897863 CYA_0104 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473597.1 100418 D 321327 CDS YP_473598.1 86604835 3897864 101454..101705 1 NC_007775.1 hypothetical protein 101705 3897864 CYA_0105 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473598.1 101454 D 321327 CDS YP_473599.1 86604836 3897865 101922..103049 1 NC_007775.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 103049 3897865 CYA_0107 Synechococcus sp. JA-3-3Ab UDP-N-acetylglucosamine 2-epimerase YP_473599.1 101922 D 321327 CDS YP_473600.1 86604837 3897866 complement(103038..103166) 1 NC_007775.1 hypothetical protein 103166 3897866 CYA_0106 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473600.1 103038 R 321327 CDS YP_473601.1 86604838 3897867 complement(103453..103701) 1 NC_007775.1 hypothetical protein 103701 3897867 CYA_0108 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473601.1 103453 R 321327 CDS YP_473602.1 86604839 3897868 104219..105340 1 NC_007775.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 105340 ftsZ 3897868 ftsZ Synechococcus sp. JA-3-3Ab cell division protein FtsZ YP_473602.1 104219 D 321327 CDS YP_473603.1 86604840 3897869 105410..106381 1 NC_007775.1 identified by similarity to SP:P07862; match to protein family HMM PF01820; match to protein family HMM PF07478; match to protein family HMM TIGR01205; D-alanine--D-alanine ligase 106381 ddlB 3897869 ddlB Synechococcus sp. JA-3-3Ab D-alanine--D-alanine ligase YP_473603.1 105410 D 321327 CDS YP_473604.1 86604841 3897870 complement(106401..106871) 1 NC_007775.1 hypothetical protein 106871 3897870 CYA_0111 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473604.1 106401 R 321327 CDS YP_473605.1 86604842 3897871 107039..107704 1 NC_007775.1 catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine; Mg-protoporphyrin IX methyl transferase 107704 chlM 3897871 chlM Synechococcus sp. JA-3-3Ab Mg-protoporphyrin IX methyl transferase YP_473605.1 107039 D 321327 CDS YP_473606.1 86604843 3897872 complement(107756..108475) 1 NC_007775.1 identified by match to protein family HMM PF02985; match to protein family HMM PF03130; HEAT repeat-containing PBS lyase 108475 3897872 CYA_0113 Synechococcus sp. JA-3-3Ab HEAT repeat-containing PBS lyase YP_473606.1 107756 R 321327 CDS YP_473607.1 86604844 3897873 complement(108623..109369) 1 NC_007775.1 identified by similarity to SP:P35137; match to protein family HMM PF00160; cyclophilin type peptidyl-prolyl cis-trans isomerase 109369 3897873 CYA_0114 Synechococcus sp. JA-3-3Ab cyclophilin type peptidyl-prolyl cis-trans isomerase YP_473607.1 108623 R 321327 CDS YP_473608.1 86604845 3897874 complement(109442..110236) 1 NC_007775.1 hypothetical protein 110236 3897874 CYA_0115 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473608.1 109442 R 321327 CDS YP_473609.1 86604846 3897875 complement(110298..111221) 1 NC_007775.1 identified by similarity to PIR:S76405; match to protein family HMM PF07466; hypothetical protein 111221 3897875 CYA_0116 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473609.1 110298 R 321327 CDS YP_473610.1 86604847 3897876 111443..113350 1 NC_007775.1 identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein 113350 3897876 CYA_0117 Synechococcus sp. JA-3-3Ab endonuclease/exonuclease/phosphatase family protein YP_473610.1 111443 D 321327 CDS YP_473611.1 86604848 3897877 complement(113491..114609) 1 NC_007775.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 114609 cbiD 3897877 cbiD Synechococcus sp. JA-3-3Ab cobalt-precorrin-6A synthase YP_473611.1 113491 R 321327 CDS YP_473612.1 86604849 3897878 114833..115186 1 NC_007775.1 identified by similarity to GB:BAC88346.1; hypothetical protein 115186 3897878 CYA_0119 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473612.1 114833 D 321327 CDS YP_473613.1 86604850 3897879 complement(115188..115784) 1 NC_007775.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 115784 def 3897879 def Synechococcus sp. JA-3-3Ab peptide deformylase YP_473613.1 115188 R 321327 CDS YP_473614.1 86604851 3898643 complement(116244..116555) 1 NC_007775.1 identified by similarity to GB:BAD78811.1; hypothetical protein 116555 3898643 CYA_0121 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473614.1 116244 R 321327 CDS YP_473615.1 86604852 3898644 complement(116559..116885) 1 NC_007775.1 identified by similarity to PIR:AD2369; hypothetical protein 116885 3898644 CYA_0122 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473615.1 116559 R 321327 CDS YP_473616.1 86604853 3898645 complement(116885..117061) 1 NC_007775.1 phycobilisome degradation family protein 117061 3898645 CYA_0123 Synechococcus sp. JA-3-3Ab phycobilisome degradation family protein YP_473616.1 116885 R 321327 CDS YP_473617.1 86604854 3898646 complement(117159..117344) 1 NC_007775.1 hypothetical protein 117344 3898646 CYA_0124 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473617.1 117159 R 321327 CDS YP_473618.1 86604855 3898647 117441..117692 1 NC_007775.1 identified by match to protein family HMM PF00076; RNA-binding protein 117692 3898647 CYA_0125 Synechococcus sp. JA-3-3Ab RNA-binding protein YP_473618.1 117441 D 321327 CDS YP_473619.1 86604856 3898648 117811..119115 1 NC_007775.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619; nuclease SbcCD subunit D 119115 3898648 CYA_0126 Synechococcus sp. JA-3-3Ab nuclease SbcCD subunit D YP_473619.1 117811 D 321327 CDS YP_473620.1 86604857 3898649 119457..119702 1 NC_007775.1 identified by similarity to GB:BAB50217.1; match to protein family HMM PF04226; hypothetical protein 119702 3898649 CYA_0127 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473620.1 119457 D 321327 CDS YP_473621.1 86604858 3898650 complement(119962..121887) 1 NC_007775.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 121887 speA 3898650 speA Synechococcus sp. JA-3-3Ab arginine decarboxylase YP_473621.1 119962 R 321327 CDS YP_473622.1 86604859 3898651 122379..123428 1 NC_007775.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975; phosphate ABC transporter, phosphate-binding protein 123428 pstS-1 3898651 pstS-1 Synechococcus sp. JA-3-3Ab phosphate ABC transporter, phosphate-binding protein YP_473622.1 122379 D 321327 CDS YP_473623.1 86604860 3898652 123678..125564 1 NC_007775.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 125564 dnaK 3898652 dnaK Synechococcus sp. JA-3-3Ab molecular chaperone DnaK YP_473623.1 123678 D 321327 CDS YP_473624.1 86604861 3898653 125763..126731 1 NC_007775.1 identified by match to protein family HMM PF00226; match to protein family HMM PF01556; DnaJ family protein 126731 3898653 CYA_0132 Synechococcus sp. JA-3-3Ab DnaJ family protein YP_473624.1 125763 D 321327 CDS YP_473625.1 86604862 3898654 complement(126728..128053) 1 NC_007775.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754; glycolate oxidase, iron-sulfur subunit 128053 3898654 CYA_0131 Synechococcus sp. JA-3-3Ab glycolate oxidase, iron-sulfur subunit YP_473625.1 126728 R 321327 CDS YP_473626.1 86604863 3898655 128274..128594 1 NC_007775.1 identified by similarity to GB:BAC91314.1; hypothetical protein 128594 3898655 CYA_0134 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473626.1 128274 D 321327 CDS YP_473627.1 86604864 3898656 complement(128591..130471) 1 NC_007775.1 identified by similarity to GB:BAD78814.1; match to protein family HMM PF00501; long-chain-fatty-acid-CoA ligase-like protein 130471 3898656 CYA_0133 Synechococcus sp. JA-3-3Ab long-chain-fatty-acid-CoA ligase-like protein YP_473627.1 128591 R 321327 CDS YP_473628.1 86604865 3898657 complement(130865..131179) 1 NC_007775.1 identified by match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein 131179 cas2-1 3898657 cas2-1 Synechococcus sp. JA-3-3Ab CRISPR-associated Cas2 family protein YP_473628.1 130865 R 321327 CDS YP_473630.1 86604867 3898659 complement(131558..133147) 1 NC_007775.1 hypothetical protein 133147 3898659 CYA_0137 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473630.1 131558 R 321327 CDS YP_473631.1 86604868 3898660 complement(134068..134361) 1 NC_007775.1 hypothetical protein 134361 3898660 CYA_0138 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473631.1 134068 R 321327 CDS YP_473632.1 86604869 3898661 complement(134674..135246) 1 NC_007775.1 identified by match to protein family HMM PF05685; hypothetical protein 135246 3898661 CYA_0139 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473632.1 134674 R 321327 CDS YP_473633.1 86604870 3897806 complement(135265..135906) 1 NC_007775.1 identified by similarity to PIR:AE2046; match to protein family HMM PF05685; hypothetical protein 135906 3897806 CYA_0140 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473633.1 135265 R 321327 CDS YP_473634.1 86604871 3897808 complement(136943..137164) 1 NC_007775.1 CAB/ELIP/HLIP family protein 137164 3897808 CYA_0142 Synechococcus sp. JA-3-3Ab CAB/ELIP/HLIP family protein YP_473634.1 136943 R 321327 CDS YP_473635.1 86604872 3897809 complement(137266..138777) 1 NC_007775.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 138777 ilvA 3897809 ilvA Synechococcus sp. JA-3-3Ab threonine dehydratase YP_473635.1 137266 R 321327 CDS YP_473636.1 86604873 3897810 138937..139419 1 NC_007775.1 identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase family protein 139419 3897810 CYA_0144 Synechococcus sp. JA-3-3Ab pyridoxamine 5'-phosphate oxidase family protein YP_473636.1 138937 D 321327 CDS YP_473637.1 86604874 3897811 complement(139456..140352) 1 NC_007775.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 140352 3897811 CYA_0145 Synechococcus sp. JA-3-3Ab alpha/beta fold family hydrolase YP_473637.1 139456 R 321327 CDS YP_473638.1 86604875 3897812 140472..141203 1 NC_007775.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; WecB/TagA/CpsF family glycosyl transferase 141203 3897812 CYA_0146 Synechococcus sp. JA-3-3Ab WecB/TagA/CpsF family glycosyl transferase YP_473638.1 140472 D 321327 CDS YP_473639.1 86604876 3897813 141729..142415 1 NC_007775.1 identified by similarity to SP:P10115; match to protein family HMM PF00005; match to protein family HMM TIGR02673; cell division ATP-binding protein FtsE 142415 ftsE 3897813 ftsE Synechococcus sp. JA-3-3Ab cell division ATP-binding protein FtsE YP_473639.1 141729 D 321327 CDS YP_473640.1 86604877 3897814 complement(142592..144856) 1 NC_007775.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 144856 metE-1 3897814 metE-1 Synechococcus sp. JA-3-3Ab 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_473640.1 142592 R 321327 CDS YP_473641.1 86604878 3897815 145761..147386 1 NC_007775.1 identified by match to protein family HMM PF00496; peptide/opine/nickel ABC transporter substrate-binding protein 147386 3897815 CYA_0149 Synechococcus sp. JA-3-3Ab peptide/opine/nickel ABC transporter substrate-binding protein YP_473641.1 145761 D 321327 CDS YP_473642.1 86604879 3897816 147371..148372 1 NC_007775.1 identified by similarity to SP:P42062; match to protein family HMM PF00528; peptide/opine/nickel ABC transporter permease 148372 3897816 CYA_0150 Synechococcus sp. JA-3-3Ab peptide/opine/nickel ABC transporter permease YP_473642.1 147371 D 321327 CDS YP_473643.1 86604880 3897817 148369..149262 1 NC_007775.1 identified by similarity to SP:P26904; match to protein family HMM PF00528; peptide/opine/nickel ABC transporter permease 149262 3897817 CYA_0151 Synechococcus sp. JA-3-3Ab peptide/opine/nickel ABC transporter permease YP_473643.1 148369 D 321327 CDS YP_473644.1 86604881 3897818 149267..150196 1 NC_007775.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; peptide/opine/nickel uptake ABC transporter ATP-binding protein 150196 3897818 CYA_0152 Synechococcus sp. JA-3-3Ab peptide/opine/nickel uptake ABC transporter ATP-binding protein YP_473644.1 149267 D 321327 CDS YP_473645.1 86604882 3897819 150183..150857 1 NC_007775.1 identified by similarity to GB:AAC67221.1; match to protein family HMM PF00005; peptide/opine/nickel uptake ABC transporter ATP-binding protein 150857 3897819 CYA_0153 Synechococcus sp. JA-3-3Ab peptide/opine/nickel uptake ABC transporter ATP-binding protein YP_473645.1 150183 D 321327 CDS YP_473646.1 86604883 3897820 150950..151867 1 NC_007775.1 identified by match to protein family HMM PF02687; permease 151867 3897820 CYA_0154 Synechococcus sp. JA-3-3Ab permease YP_473646.1 150950 D 321327 CDS YP_473647.1 86604884 3897821 151961..152200 1 NC_007775.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 152200 3897821 CYA_0155 Synechococcus sp. JA-3-3Ab DNA-directed RNA polymerase subunit omega YP_473647.1 151961 D 321327 CDS YP_473648.1 86604885 3897822 complement(152388..152861) 1 NC_007775.1 identified by match to protein family HMM PF01797; ISSoc3, orfA transposase 152861 3897822 CYA_0156 Synechococcus sp. JA-3-3Ab ISSoc3, orfA transposase YP_473648.1 152388 R 321327 CDS YP_473649.1 86604886 3897823 152817..154088 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc3, orfB transposase 154088 3897823 CYA_0158 Synechococcus sp. JA-3-3Ab ISSoc3, orfB transposase YP_473649.1 152817 D 321327 CDS YP_473650.1 86604887 3897824 complement(154078..154842) 1 NC_007775.1 identified by match to protein family HMM PF00924; small conductance mechanosensitive ion channel (MscS) family protein 154842 3897824 CYA_0157 Synechococcus sp. JA-3-3Ab small conductance mechanosensitive ion channel (MscS) family protein YP_473650.1 154078 R 321327 CDS YP_473651.1 86604888 3897825 complement(154882..156000) 1 NC_007775.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00378; calcium/proton exchanger 156000 cax 3897825 cax Synechococcus sp. JA-3-3Ab calcium/proton exchanger YP_473651.1 154882 R 321327 CDS YP_473652.1 86604889 3897768 complement(156188..156946) 1 NC_007775.1 identified by similarity to PIR:AB2317; hypothetical protein 156946 3897768 CYA_0160 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473652.1 156188 R 321327 CDS YP_473653.1 86604890 3897769 complement(157001..158224) 1 NC_007775.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 158224 coaBC 3897769 coaBC Synechococcus sp. JA-3-3Ab bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_473653.1 157001 R 321327 CDS YP_473654.1 86604891 3897770 158574..158942 1 NC_007775.1 identified by similarity to PIR:AB2066; hypothetical protein 158942 3897770 CYA_0162 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473654.1 158574 D 321327 CDS YP_473655.1 86604892 3897771 159202..159990 1 NC_007775.1 hypothetical protein 159990 3897771 CYA_0163 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473655.1 159202 D 321327 CDS YP_473656.1 86604893 3897772 159947..161716 1 NC_007775.1 identified by similarity to GB:BAC09647.1; match to protein family HMM PF01935; hypothetical protein 161716 3897772 CYA_0165 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473656.1 159947 D 321327 CDS YP_473657.1 86604894 3897773 complement(161686..162930) 1 NC_007775.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 162930 ubiH 3897773 ubiH Synechococcus sp. JA-3-3Ab 2-octaprenyl-6-methoxyphenyl hydroxylase YP_473657.1 161686 R 321327 CDS YP_473658.1 86604895 3897774 complement(162933..163925) 1 NC_007775.1 identified by match to protein family HMM PF02353; cyclopropane-fatty-acyl-phospholipid synthase family protein 163925 3897774 CYA_0166 Synechococcus sp. JA-3-3Ab cyclopropane-fatty-acyl-phospholipid synthase family protein YP_473658.1 162933 R 321327 CDS YP_473659.1 86604896 3897775 complement(164140..166383) 1 NC_007775.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 166383 metE-2 3897775 metE-2 Synechococcus sp. JA-3-3Ab 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_473659.1 164140 R 321327 CDS YP_473660.1 86604897 3897777 complement(167117..167602) 1 NC_007775.1 identified by match to protein family HMM PF02391; molybdopterin converting factor subunit 2 167602 moaE 3897777 moaE Synechococcus sp. JA-3-3Ab molybdopterin converting factor subunit 2 YP_473660.1 167117 R 321327 CDS YP_473661.1 86604898 3897778 complement(167603..167866) 1 NC_007775.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682; molybdopterin converting factor subunit 1 167866 3897778 CYA_0170 Synechococcus sp. JA-3-3Ab molybdopterin converting factor subunit 1 YP_473661.1 167603 R 321327 CDS YP_473662.1 86604899 3897779 complement(167841..168935) 1 NC_007775.1 identified by match to protein family HMM PF01967; match to protein family HMM TIGR00581; bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA 168935 moaC 3897779 moaC Synechococcus sp. JA-3-3Ab bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA YP_473662.1 167841 R 321327 CDS YP_473663.1 86604900 3897780 complement(168940..169878) 1 NC_007775.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666; molybdenum cofactor biosynthesis protein A 169878 moaA 3897780 moaA Synechococcus sp. JA-3-3Ab molybdenum cofactor biosynthesis protein A YP_473663.1 168940 R 321327 CDS YP_473664.1 86604901 3897781 complement(169880..171043) 1 NC_007775.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis protein MoeA 171043 moeA 3897781 moeA Synechococcus sp. JA-3-3Ab molybdopterin biosynthesis protein MoeA YP_473664.1 169880 R 321327 CDS YP_473665.1 86604902 3897782 complement(171021..171494) 1 NC_007775.1 identified by similarity to GB:BAD78799.1; match to protein family HMM TIGR02664; hypothetical protein 171494 3897782 CYA_0174 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473665.1 171021 R 321327 CDS YP_473666.1 86604903 3897784 174066..174407 1 NC_007775.1 identified by similarity to PIR:S70530; pilin domain-containing protein 174407 3897784 CYA_0177 Synechococcus sp. JA-3-3Ab pilin domain-containing protein YP_473666.1 174066 D 321327 CDS YP_473667.1 86604904 3897785 174653..175975 1 NC_007775.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 175975 pyrC 3897785 pyrC Synechococcus sp. JA-3-3Ab dihydroorotase YP_473667.1 174653 D 321327 CDS YP_473668.1 86604905 3897149 176347..176748 1 NC_007775.1 identified by similarity to GB:BAD71865.1; hypothetical protein 176748 3897149 CYA_0179 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473668.1 176347 D 321327 CDS YP_473669.1 86604906 3897150 complement(176758..179400) 1 NC_007775.1 identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; ATP-dependent chaperone protein ClpB 179400 clpB 3897150 clpB Synechococcus sp. JA-3-3Ab ATP-dependent chaperone protein ClpB YP_473669.1 176758 R 321327 CDS YP_473670.1 86604907 3897151 complement(179593..181878) 1 NC_007775.1 identified by similarity to SP:Q46363; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; acetazolamide conferring resistance protein Zam 181878 zam 3897151 zam Synechococcus sp. JA-3-3Ab acetazolamide conferring resistance protein Zam YP_473670.1 179593 R 321327 CDS YP_473671.1 86604908 3897152 complement(181936..182577) 1 NC_007775.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system regulatory protein PhoU 182577 phoU 3897152 phoU Synechococcus sp. JA-3-3Ab phosphate transport system regulatory protein PhoU YP_473671.1 181936 R 321327 CDS YP_473672.1 86604909 3897153 182785..184113 1 NC_007775.1 identified by similarity to PIR:AG2237; hypothetical protein 184113 3897153 CYA_0183 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473672.1 182785 D 321327 CDS YP_473673.1 86604910 3897154 184130..185644 1 NC_007775.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; oxidoreductase, FAD-binding 185644 3897154 CYA_0185 Synechococcus sp. JA-3-3Ab oxidoreductase, FAD-binding YP_473673.1 184130 D 321327 CDS YP_473674.1 86604911 3897155 complement(185641..187449) 1 NC_007775.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402; malto-oligosyltrehalose trehalohydrolase 187449 treZ 3897155 treZ Synechococcus sp. JA-3-3Ab malto-oligosyltrehalose trehalohydrolase YP_473674.1 185641 R 321327 CDS YP_473675.1 86604912 3897156 complement(187712..187861) 1 NC_007775.1 hypothetical protein 187861 3897156 CYA_0186 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473675.1 187712 R 321327 CDS YP_473676.1 86604913 3897157 187888..188067 1 NC_007775.1 hypothetical protein 188067 3897157 CYA_0187 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473676.1 187888 D 321327 CDS YP_473677.1 86604914 3897158 complement(188130..188315) 1 NC_007775.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 188315 rpsU 3897158 rpsU Synechococcus sp. JA-3-3Ab 30S ribosomal protein S21 YP_473677.1 188130 R 321327 CDS YP_473678.1 86604915 3897159 complement(188402..189658) 1 NC_007775.1 identified by match to protein family HMM PF00089; match to protein family HMM PF05738; trypsin domain-containing lipoprotein 189658 3897159 CYA_0189 Synechococcus sp. JA-3-3Ab trypsin domain-containing lipoprotein YP_473678.1 188402 R 321327 CDS YP_473679.1 86604916 3897161 190539..190877 1 NC_007775.1 identified by similarity to GB:BAD02092.1; hypothetical protein 190877 3897161 CYA_0192 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473679.1 190539 D 321327 CDS YP_473680.1 86604917 3897162 191016..192194 1 NC_007775.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 192194 dxr 3897162 dxr Synechococcus sp. JA-3-3Ab 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_473680.1 191016 D 321327 CDS YP_473681.1 86604918 3897163 192254..194020 1 NC_007775.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; heavy metal ABC transporter (HMT) family permease/ATP-binding protein 194020 3897163 CYA_0194 Synechococcus sp. JA-3-3Ab heavy metal ABC transporter (HMT) family permease/ATP-binding protein YP_473681.1 192254 D 321327 CDS YP_473682.1 86604919 3897164 194111..195700 1 NC_007775.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01085; UDP-N-acetylmuramyl tripeptide synthetase 195700 murE 3897164 murE Synechococcus sp. JA-3-3Ab UDP-N-acetylmuramyl tripeptide synthetase YP_473682.1 194111 D 321327 CDS YP_473683.1 86604920 3897165 complement(195697..196884) 1 NC_007775.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 196884 carA 3897165 carA Synechococcus sp. JA-3-3Ab carbamoyl phosphate synthase small subunit YP_473683.1 195697 R 321327 CDS YP_473684.1 86604921 3897166 complement(196981..197532) 1 NC_007775.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; pilin 197532 3897166 CYA_0197 Synechococcus sp. JA-3-3Ab pilin YP_473684.1 196981 R 321327 CDS YP_473685.1 86604922 3897167 complement(197547..198674) 1 NC_007775.1 identified by similarity to SP:Q00517; match to protein family HMM PF07963; match to protein family HMM TIGR02532; PddD domain-containing protein 198674 3897167 CYA_0198 Synechococcus sp. JA-3-3Ab PddD domain-containing protein YP_473685.1 197547 R 321327 CDS YP_473686.1 86604923 3897168 complement(198731..199495) 1 NC_007775.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prepilin-type N-terminal cleavage/methylation domain-containing protein 199495 3897168 CYA_0199 Synechococcus sp. JA-3-3Ab prepilin-type N-terminal cleavage/methylation domain-containing protein YP_473686.1 198731 R 321327 CDS YP_473687.1 86604924 3897692 complement(199553..206794) 1 NC_007775.1 hypothetical protein 206794 3897692 CYA_0200 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473687.1 199553 R 321327 CDS YP_473688.1 86604925 3897693 complement(206915..207511) 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; DNA-binding response regulator 207511 3897693 CYA_0201 Synechococcus sp. JA-3-3Ab DNA-binding response regulator YP_473688.1 206915 R 321327 CDS YP_473689.1 86604926 3897694 complement(207609..208199) 1 NC_007775.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 208199 3897694 CYA_0202 Synechococcus sp. JA-3-3Ab pentapeptide repeat-containing protein YP_473689.1 207609 R 321327 CDS YP_473690.1 86604927 3897695 complement(208311..209162) 1 NC_007775.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 209162 mutM 3897695 mutM Synechococcus sp. JA-3-3Ab formamidopyrimidine-DNA glycosylase YP_473690.1 208311 R 321327 CDS YP_473691.1 86604928 3897696 complement(209208..209429) 1 NC_007775.1 Stabilizes the interaction between PsaC and the photosystem I core; photosystem I reaction center subunit IV 209429 psaE 3897696 psaE Synechococcus sp. JA-3-3Ab photosystem I reaction center subunit IV YP_473691.1 209208 R 321327 CDS YP_473692.1 86604929 3897697 209709..209861 1 NC_007775.1 CAB/ELIP/HLIP family protein 209861 3897697 CYA_0205 Synechococcus sp. JA-3-3Ab CAB/ELIP/HLIP family protein YP_473692.1 209709 D 321327 CDS YP_473693.1 86604930 3897698 complement(210133..211803) 1 NC_007775.1 identified by match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552; NAD+ synthetase 211803 nadE 3897698 nadE Synechococcus sp. JA-3-3Ab NAD+ synthetase YP_473693.1 210133 R 321327 CDS YP_473694.1 86604931 3897699 complement(211884..213749) 1 NC_007775.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 213749 uvrC 3897699 uvrC Synechococcus sp. JA-3-3Ab excinuclease ABC subunit C YP_473694.1 211884 R 321327 CDS YP_473695.1 86604932 3897700 complement(214082..216415) 1 NC_007775.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; 1A family penicillin-binding protein 216415 3897700 CYA_0208 Synechococcus sp. JA-3-3Ab 1A family penicillin-binding protein YP_473695.1 214082 R 321327 CDS YP_473696.1 86604933 3897701 complement(216419..218263) 1 NC_007775.1 identified by match to protein family HMM PF00069; serine/threonine protein kinase 218263 3897701 CYA_0209 Synechococcus sp. JA-3-3Ab serine/threonine protein kinase YP_473696.1 216419 R 321327 CDS YP_473697.1 86604934 3897702 complement(218206..218337) 1 NC_007775.1 hypothetical protein 218337 3897702 CYA_0210 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473697.1 218206 R 321327 CDS YP_473698.1 86604935 3897703 218392..219309 1 NC_007775.1 identified by match to protein family HMM PF00850; histone deacetylase family protein 219309 3897703 CYA_0211 Synechococcus sp. JA-3-3Ab histone deacetylase family protein YP_473698.1 218392 D 321327 CDS YP_473699.1 86604936 3897704 complement(219321..220040) 1 NC_007775.1 identified by match to protein family HMM PF00481; protein phosphatase 2C family protein 220040 3897704 CYA_0212 Synechococcus sp. JA-3-3Ab protein phosphatase 2C family protein YP_473699.1 219321 R 321327 CDS YP_473700.1 86604937 3897705 complement(220040..221776) 1 NC_007775.1 identified by match to protein family HMM PF03109; hypothetical protein 221776 3897705 CYA_0213 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473700.1 220040 R 321327 CDS YP_473701.1 86604938 3897706 complement(221773..222084) 1 NC_007775.1 hypothetical protein 222084 3897706 CYA_0214 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473701.1 221773 R 321327 CDS YP_473702.1 86604939 3897707 complement(222224..222949) 1 NC_007775.1 identified by similarity to SP:P29986; match to protein family HMM PF00427; phycobilisome rod-core linker polypeptide cpcG1 222949 cpcG1 3897707 cpcG1 Synechococcus sp. JA-3-3Ab phycobilisome rod-core linker polypeptide cpcG1 YP_473702.1 222224 R 321327 CDS YP_473703.1 86604940 3897708 complement(222992..223708) 1 NC_007775.1 identified by match to protein family HMM PF02985; match to protein family HMM PF03130; phycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit 223708 cpcF 3897708 cpcF Synechococcus sp. JA-3-3Ab phycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit YP_473703.1 222992 R 321327 CDS YP_473704.1 86604941 3897709 complement(223721..224473) 1 NC_007775.1 identified by match to protein family HMM PF02985; match to protein family HMM PF03130; phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit 224473 cpcE-1 3897709 cpcE-1 Synechococcus sp. JA-3-3Ab phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit YP_473704.1 223721 R 321327 CDS YP_473705.1 86604942 3897710 complement(224564..224824) 1 NC_007775.1 identified by similarity to SP:P31966; match to protein family HMM PF01383; phycobilisome 8.9 kDa linker polypeptide, phycocyanin-associated, rod 224824 cpcD 3897710 cpcD Synechococcus sp. JA-3-3Ab phycobilisome 8.9 kDa linker polypeptide, phycocyanin-associated, rod YP_473705.1 224564 R 321327 CDS YP_473706.1 86604943 3897169 complement(224962..225054) 1 NC_007775.1 hypothetical protein 225054 3897169 CYA_0219 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473706.1 224962 R 321327 CDS YP_473707.1 86604944 3897170 complement(225113..225601) 1 NC_007775.1 identified by similarity to SP:P07121; match to protein family HMM PF00502; phycocyanin subunit alpha 225601 cpcA-1 3897170 cpcA-1 Synechococcus sp. JA-3-3Ab phycocyanin subunit alpha YP_473707.1 225113 R 321327 CDS YP_473708.1 86604945 3897171 complement(225749..226267) 1 NC_007775.1 identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339; phycocyanin subunit beta 226267 cpcB-1 3897171 cpcB-1 Synechococcus sp. JA-3-3Ab phycocyanin subunit beta YP_473708.1 225749 R 321327 CDS YP_473709.1 86604946 3897172 226300..226515 1 NC_007775.1 hypothetical protein 226515 3897172 CYA_0222 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473709.1 226300 D 321327 CDS YP_473710.1 86604947 3897173 complement(226682..227497) 1 NC_007775.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 227497 trpA 3897173 trpA Synechococcus sp. JA-3-3Ab tryptophan synthase subunit alpha YP_473710.1 226682 R 321327 CDS YP_473711.1 86604948 3897174 complement(227551..228951) 1 NC_007775.1 identified by match to protein family HMM PF01094; hydrophobic amino acid uptake ABC transporter amino acid-binding protein 228951 3897174 CYA_0224 Synechococcus sp. JA-3-3Ab hydrophobic amino acid uptake ABC transporter amino acid-binding protein YP_473711.1 227551 R 321327 CDS YP_473712.1 86604949 3897175 complement(229067..229282) 1 NC_007775.1 hypothetical protein 229282 3897175 CYA_0225 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473712.1 229067 R 321327 CDS YP_473713.1 86604950 3897176 complement(229317..230522) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc7, transposase 230522 3897176 CYA_0226 Synechococcus sp. JA-3-3Ab ISSoc7, transposase YP_473713.1 229317 R 321327 CDS YP_473714.1 86604951 3897177 230628..231440 1 NC_007775.1 identified by similarity to GB:CAC11720.1; hypothetical protein 231440 3897177 CYA_0227 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473714.1 230628 D 321327 CDS YP_473715.1 86604952 3897178 complement(231451..231828) 1 NC_007775.1 identified by similarity to SP:P48243; match to protein family HMM PF00005; polar amino acid ABC transporter ATP-binding protein 231828 3897178 CYA_0228 Synechococcus sp. JA-3-3Ab polar amino acid ABC transporter ATP-binding protein YP_473715.1 231451 R 321327 CDS YP_473716.1 86604953 3897179 232277..232387 1 NC_007775.1 hypothetical protein 232387 3897179 CYA_0229 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473716.1 232277 D 321327 CDS YP_473717.1 86604954 3897180 232464..232709 1 NC_007775.1 identified by match to protein family HMM PF05120; gas vesicle protein G 232709 gvpG 3897180 gvpG Synechococcus sp. JA-3-3Ab gas vesicle protein G YP_473717.1 232464 D 321327 CDS YP_473718.1 86604955 3897181 232782..233399 1 NC_007775.1 identified by similarity to GB:BAC89072.1; hypothetical protein 233399 3897181 CYA_0231 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473718.1 232782 D 321327 CDS YP_473719.1 86604956 3897182 233619..235439 1 NC_007775.1 identified by similarity to GB:AAL85276.1; match to protein family HMM PF05670; match to protein family HMM PF05833; fibronectin-binding protein 235439 3897182 CYA_0233 Synechococcus sp. JA-3-3Ab fibronectin-binding protein YP_473719.1 233619 D 321327 CDS YP_473720.1 86604957 3897183 complement(235426..236730) 1 NC_007775.1 identified by match to protein family HMM PF00079; peptidase inhibitor 236730 3897183 CYA_0232 Synechococcus sp. JA-3-3Ab peptidase inhibitor YP_473720.1 235426 R 321327 CDS YP_473721.1 86604958 3897184 236956..237525 1 NC_007775.1 identified by match to protein family HMM PF02643; hypothetical protein 237525 3897184 CYA_0234 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473721.1 236956 D 321327 CDS YP_473722.1 86604959 3897185 237766..239034 1 NC_007775.1 identified by match to protein family HMM PF00106; bifunctional sterol desaturase/short chain dehydrogenase 239034 3897185 CYA_0235 Synechococcus sp. JA-3-3Ab bifunctional sterol desaturase/short chain dehydrogenase YP_473722.1 237766 D 321327 CDS YP_473723.1 86604960 3897186 239220..240008 1 NC_007775.1 lipoprotein 240008 3897186 CYA_0236 Synechococcus sp. JA-3-3Ab lipoprotein YP_473723.1 239220 D 321327 CDS YP_473724.1 86604961 3897187 240083..240940 1 NC_007775.1 identified by match to protein family HMM PF02511; match to protein family HMM TIGR02170; thymidylate synthase, flavin-dependent 240940 thyX 3897187 thyX Synechococcus sp. JA-3-3Ab thymidylate synthase, flavin-dependent YP_473724.1 240083 D 321327 CDS YP_473725.1 86604962 3897188 240856..241740 1 NC_007775.1 identified by similarity to GB:CAH39666.1; hypothetical protein 241740 3897188 CYA_0238 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473725.1 240856 D 321327 CDS YP_473726.1 86604963 3897616 241889..243349 1 NC_007775.1 identified by match to protein family HMM PF02397; sugar transferase 243349 3897616 CYA_0239 Synechococcus sp. JA-3-3Ab sugar transferase YP_473726.1 241889 D 321327 CDS YP_473727.1 86604964 3897617 243360..244130 1 NC_007775.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 244130 purC 3897617 purC Synechococcus sp. JA-3-3Ab phosphoribosylaminoimidazole-succinocarboxamide synthase YP_473727.1 243360 D 321327 CDS YP_473728.1 86604965 3897618 244138..245547 1 NC_007775.1 hypothetical protein 245547 3897618 CYA_0241 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473728.1 244138 D 321327 CDS YP_473729.1 86604966 3897619 245744..246574 1 NC_007775.1 identified by similarity to GB:BAC08994.1; hypothetical protein 246574 3897619 CYA_0242 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473729.1 245744 D 321327 CDS YP_473730.1 86604967 3897620 complement(246676..247608) 1 NC_007775.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 247608 hemC 3897620 hemC Synechococcus sp. JA-3-3Ab porphobilinogen deaminase YP_473730.1 246676 R 321327 CDS YP_473731.1 86604968 3897621 247938..248399 1 NC_007775.1 identified by similarity to PIR:AD2256; hypothetical protein 248399 3897621 CYA_0244 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473731.1 247938 D 321327 CDS YP_473732.1 86604969 3897622 248588..250033 1 NC_007775.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 250033 3897622 CYA_0245 Synechococcus sp. JA-3-3Ab glycosyl transferase family protein YP_473732.1 248588 D 321327 CDS YP_473733.1 86604970 3897623 250107..251099 1 NC_007775.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 251099 ilvC 3897623 ilvC Synechococcus sp. JA-3-3Ab ketol-acid reductoisomerase YP_473733.1 250107 D 321327 CDS YP_473734.1 86604971 3897624 251123..252430 1 NC_007775.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 252430 serS 3897624 serS Synechococcus sp. JA-3-3Ab seryl-tRNA synthetase YP_473734.1 251123 D 321327 CDS YP_473735.1 86604972 3897625 252522..252956 1 NC_007775.1 identified by match to protein family HMM PF03965; BlaI/MecI/CopY family transcriptional regulator 252956 3897625 CYA_0248 Synechococcus sp. JA-3-3Ab BlaI/MecI/CopY family transcriptional regulator YP_473735.1 252522 D 321327 CDS YP_473736.1 86604973 3897626 252953..253825 1 NC_007775.1 hypothetical protein 253825 3897626 CYA_0249 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473736.1 252953 D 321327 CDS YP_473737.1 86604974 3897628 254428..254949 1 NC_007775.1 identified by match to protein family HMM PF00719; inorganic pyrophosphatase 254949 ppa 3897628 ppa Synechococcus sp. JA-3-3Ab inorganic pyrophosphatase YP_473737.1 254428 D 321327 CDS YP_473738.1 86604975 3897629 255048..255797 1 NC_007775.1 identified by match to protein family HMM PF02683; cytochrome c biogenesis membrane protein 255797 3897629 CYA_0252 Synechococcus sp. JA-3-3Ab cytochrome c biogenesis membrane protein YP_473738.1 255048 D 321327 CDS YP_473739.1 86604976 3897630 255874..257310 1 NC_007775.1 identified by match to protein family HMM PF05140; cytochrome c-type biogenesis protein ResB 257310 3897630 CYA_0254 Synechococcus sp. JA-3-3Ab cytochrome c-type biogenesis protein ResB YP_473739.1 255874 D 321327 CDS YP_473740.1 86604977 3897631 complement(257307..260417) 1 NC_007775.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 260417 3897631 CYA_0253 Synechococcus sp. JA-3-3Ab sensory box histidine kinase YP_473740.1 257307 R 321327 CDS YP_473741.1 86604978 3897632 261102..262256 1 NC_007775.1 identified by match to protein family HMM PF01565; FAD-binding protein 262256 3897632 CYA_0255 Synechococcus sp. JA-3-3Ab FAD-binding protein YP_473741.1 261102 D 321327 CDS YP_473742.1 86604979 3898081 complement(264137..265249) 1 NC_007775.1 identified by match to protein family HMM PF01266; oxidoreductase, FAD-binding 265249 3898081 CYA_0258 Synechococcus sp. JA-3-3Ab oxidoreductase, FAD-binding YP_473742.1 264137 R 321327 CDS YP_473743.1 86604980 3898082 complement(265283..265435) 1 NC_007775.1 identified by match to protein family HMM PF06298; photosystem II protein PsbY 265435 psbY 3898082 psbY Synechococcus sp. JA-3-3Ab photosystem II protein PsbY YP_473743.1 265283 R 321327 CDS YP_473744.1 86604981 3898083 complement(265440..265550) 1 NC_007775.1 hypothetical protein 265550 3898083 CYA_0260 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473744.1 265440 R 321327 CDS YP_473745.1 86604982 3898084 complement(265865..266866) 1 NC_007775.1 hypothetical protein 266866 3898084 CYA_0261 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473745.1 265865 R 321327 CDS YP_473746.1 86604983 3898085 complement(267160..268629) 1 NC_007775.1 identified by match to protein family HMM PF04107; glutamate--cysteine ligase 268629 3898085 CYA_0262 Synechococcus sp. JA-3-3Ab glutamate--cysteine ligase YP_473746.1 267160 R 321327 CDS YP_473747.1 86604984 3898086 complement(268685..270631) 1 NC_007775.1 identified by match to protein family HMM PF00128; alpha-amylase family protein 270631 3898086 CYA_0263 Synechococcus sp. JA-3-3Ab alpha-amylase family protein YP_473747.1 268685 R 321327 CDS YP_473748.1 86604985 3898087 complement(270708..272060) 1 NC_007775.1 identified by match to protein family HMM PF01523; tldD/pmbA family protein 272060 3898087 CYA_0264 Synechococcus sp. JA-3-3Ab tldD/pmbA family protein YP_473748.1 270708 R 321327 CDS YP_473749.1 86604986 3898088 complement(272214..272795) 1 NC_007775.1 hypothetical protein 272795 3898088 CYA_0265 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473749.1 272214 R 321327 CDS YP_473750.1 86604987 3898089 272782..273051 1 NC_007775.1 identified by match to protein family HMM TIGR02450; hypothetical protein 273051 3898089 CYA_0266 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473750.1 272782 D 321327 CDS YP_473751.1 86604988 3898090 273344..273817 1 NC_007775.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 273817 ispF 3898090 ispF Synechococcus sp. JA-3-3Ab 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_473751.1 273344 D 321327 CDS YP_473752.1 86604989 3898091 274000..275781 1 NC_007775.1 identified by match to protein family HMM PF00496; peptide/opine/nickel ABC transporter substrate-binding protein 275781 3898091 CYA_0268 Synechococcus sp. JA-3-3Ab peptide/opine/nickel ABC transporter substrate-binding protein YP_473752.1 274000 D 321327 CDS YP_473753.1 86604990 3898092 complement(275783..277948) 1 NC_007775.1 identified by match to protein family HMM PF06202; glycogen debranching enzyme family protein 277948 3898092 CYA_0269 Synechococcus sp. JA-3-3Ab glycogen debranching enzyme family protein YP_473753.1 275783 R 321327 CDS YP_473754.1 86604991 3898093 complement(278035..279093) 1 NC_007775.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 279093 3898093 CYA_0270 Synechococcus sp. JA-3-3Ab glycoside hydrolase family protein YP_473754.1 278035 R 321327 CDS YP_473755.1 86604992 3898094 complement(279213..279323) 1 NC_007775.1 hypothetical protein 279323 3898094 CYA_0271 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473755.1 279213 R 321327 CDS YP_473756.1 86604993 3898095 279300..279437 1 NC_007775.1 hypothetical protein 279437 3898095 CYA_0272 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473756.1 279300 D 321327 CDS YP_473757.1 86604994 3898096 279449..279994 1 NC_007775.1 identified by similarity to PIR:AE2202; match to protein family HMM PF04134; hypothetical protein 279994 3898096 CYA_0273 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473757.1 279449 D 321327 CDS YP_473758.1 86604995 3898097 280033..281727 1 NC_007775.1 lipoprotein 281727 3898097 CYA_0274 Synechococcus sp. JA-3-3Ab lipoprotein YP_473758.1 280033 D 321327 CDS YP_473761.1 86604998 3898061 283490..285079 1 NC_007775.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 285079 purF 3898061 purF Synechococcus sp. JA-3-3Ab amidophosphoribosyltransferase YP_473761.1 283490 D 321327 CDS YP_473762.1 86604999 3898062 285108..285635 1 NC_007775.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079; peptide deformylase 285635 def-2 3898062 def-2 Synechococcus sp. JA-3-3Ab peptide deformylase YP_473762.1 285108 D 321327 CDS YP_473763.1 86605000 3898063 285646..286068 1 NC_007775.1 identified by similarity to PIR:AE2202; match to protein family HMM PF04134; hypothetical protein 286068 3898063 CYA_0279 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473763.1 285646 D 321327 CDS YP_473764.1 86605001 3898064 286497..288758 1 NC_007775.1 identified by match to protein family HMM PF02210; thrombospondin N-terminal-like domain-containing protein 288758 3898064 CYA_0280 Synechococcus sp. JA-3-3Ab thrombospondin N-terminal-like domain-containing protein YP_473764.1 286497 D 321327 CDS YP_473765.1 86605002 3898065 289017..289997 1 NC_007775.1 hypothetical protein 289997 3898065 CYA_0281 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473765.1 289017 D 321327 CDS YP_473766.1 86605003 3898066 290261..291658 1 NC_007775.1 identified by match to protein family HMM PF00004; AAA ATPase 291658 3898066 CYA_0283 Synechococcus sp. JA-3-3Ab AAA ATPase YP_473766.1 290261 D 321327 CDS YP_473767.1 86605004 3898067 complement(291655..292578) 1 NC_007775.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 292578 ppnK 3898067 ppnK Synechococcus sp. JA-3-3Ab inorganic polyphosphate/ATP-NAD kinase YP_473767.1 291655 R 321327 CDS YP_473768.1 86605005 3898068 292733..292846 1 NC_007775.1 hypothetical protein 292846 3898068 CYA_0284 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473768.1 292733 D 321327 CDS YP_473769.1 86605006 3898069 292938..293867 1 NC_007775.1 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 293867 ispE 3898069 ispE Synechococcus sp. JA-3-3Ab 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_473769.1 292938 D 321327 CDS YP_473770.1 86605007 3898070 294018..295421 1 NC_007775.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 295421 leuC 3898070 leuC Synechococcus sp. JA-3-3Ab isopropylmalate isomerase large subunit YP_473770.1 294018 D 321327 CDS YP_473771.1 86605008 3898071 complement(295483..296295) 1 NC_007775.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 296295 thiD 3898071 thiD Synechococcus sp. JA-3-3Ab phosphomethylpyrimidine kinase YP_473771.1 295483 R 321327 CDS YP_473772.1 86605009 3898072 complement(296528..296728) 1 NC_007775.1 hypothetical protein 296728 3898072 CYA_0288 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473772.1 296528 R 321327 CDS YP_473773.1 86605010 3898073 complement(296798..297106) 1 NC_007775.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008; ferredoxin, 2Fe-2S 297106 3898073 CYA_0289 Synechococcus sp. JA-3-3Ab ferredoxin, 2Fe-2S YP_473773.1 296798 R 321327 CDS YP_473774.1 86605011 3898074 complement(297115..297372) 1 NC_007775.1 identified by similarity to GB:BAD80164.1; hypothetical protein 297372 3898074 CYA_0290 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473774.1 297115 R 321327 CDS YP_473775.1 86605012 3898075 complement(297419..298483) 1 NC_007775.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase 298483 3898075 CYA_0291 Synechococcus sp. JA-3-3Ab RNA methyltransferase YP_473775.1 297419 R 321327 CDS YP_473776.1 86605013 3898076 complement(298516..298947) 1 NC_007775.1 identified by match to protein family HMM PF00636; RNase3 domain-containing protein 298947 3898076 CYA_0292 Synechococcus sp. JA-3-3Ab RNase3 domain-containing protein YP_473776.1 298516 R 321327 CDS YP_473777.1 86605014 3898077 complement(299332..299808) 1 NC_007775.1 identified by match to protein family HMM PF02605; photosystem I reaction center protein subunit XI 299808 psaL-2 3898077 psaL-2 Synechococcus sp. JA-3-3Ab photosystem I reaction center protein subunit XI YP_473777.1 299332 R 321327 CDS YP_473778.1 86605015 3898078 complement(299934..300053) 1 NC_007775.1 identified by match to protein family HMM PF01701; photosystem I reaction center subunit IX 300053 psaJ 3898078 psaJ Synechococcus sp. JA-3-3Ab photosystem I reaction center subunit IX YP_473778.1 299934 R 321327 CDS YP_473779.1 86605016 3898079 complement(300113..300658) 1 NC_007775.1 identified by similarity to SP:P25899; match to protein family HMM PF02507; photosystem I reaction center subunit III 300658 psaF 3898079 psaF Synechococcus sp. JA-3-3Ab photosystem I reaction center subunit III YP_473779.1 300113 R 321327 CDS YP_473780.1 86605017 3898041 300825..301925 1 NC_007775.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 301925 gcp 3898041 gcp Synechococcus sp. JA-3-3Ab DNA-binding/iron metalloprotein/AP endonuclease YP_473780.1 300825 D 321327 CDS YP_473781.1 86605018 3898042 complement(301889..303820) 1 NC_007775.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 303820 gidA 3898042 gidA Synechococcus sp. JA-3-3Ab tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_473781.1 301889 R 321327 CDS YP_473782.1 86605019 3898043 304116..305456 1 NC_007775.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 305456 thrC-1 3898043 thrC-1 Synechococcus sp. JA-3-3Ab threonine synthase YP_473782.1 304116 D 321327 CDS YP_473783.1 86605020 3898044 305550..306074 1 NC_007775.1 identified by match to protein family HMM PF02469; fasciclin domain-containing protein 306074 3898044 CYA_0299 Synechococcus sp. JA-3-3Ab fasciclin domain-containing protein YP_473783.1 305550 D 321327 CDS YP_473784.1 86605021 3898045 306111..306386 1 NC_007775.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01687; MoaD family protein 306386 3898045 CYA_0300 Synechococcus sp. JA-3-3Ab MoaD family protein YP_473784.1 306111 D 321327 CDS YP_473785.1 86605022 3898046 306404..306991 1 NC_007775.1 identified by match to protein family HMM PF02245; match to protein family HMM TIGR00567; DNA-3-methyladenine glycosylase 306991 3898046 CYA_0301 Synechococcus sp. JA-3-3Ab DNA-3-methyladenine glycosylase YP_473785.1 306404 D 321327 CDS YP_473786.1 86605023 3898047 307008..308276 1 NC_007775.1 identified by similarity to PIR:H75264; hypothetical protein 308276 3898047 CYA_0302 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473786.1 307008 D 321327 CDS YP_473787.1 86605024 3898048 308636..310549 1 NC_007775.1 identified by match to protein family HMM PF01436; NHL repeat-containing protein 310549 3898048 CYA_0304 Synechococcus sp. JA-3-3Ab NHL repeat-containing protein YP_473787.1 308636 D 321327 CDS YP_473788.1 86605025 3898049 complement(310546..312012) 1 NC_007775.1 identified by match to protein family HMM PF00875; match to protein family HMM PF03441; match to protein family HMM TIGR02765; deoxyribodipyrimidine photolyase 312012 phrB-1 3898049 phrB-1 Synechococcus sp. JA-3-3Ab deoxyribodipyrimidine photolyase YP_473788.1 310546 R 321327 CDS YP_473789.1 86605026 3898050 complement(312014..312340) 1 NC_007775.1 identified by similarity to SP:P02346; match to protein family HMM PF00216; DNA-binding protein HU 312340 hup-1 3898050 hup-1 Synechococcus sp. JA-3-3Ab DNA-binding protein HU YP_473789.1 312014 R 321327 CDS YP_473790.1 86605027 3898051 complement(312458..312718) 1 NC_007775.1 identified by similarity to PIR:S36975; hypothetical protein 312718 3898051 CYA_0306 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473790.1 312458 R 321327 CDS YP_473791.1 86605028 3898052 312834..313277 1 NC_007775.1 identified by similarity to GB:BAA20429.1; pmgA protein 313277 pmgA 3898052 pmgA Synechococcus sp. JA-3-3Ab pmgA protein YP_473791.1 312834 D 321327 CDS YP_473792.1 86605029 3898053 complement(313288..315018) 1 NC_007775.1 hypothetical protein 315018 3898053 CYA_0308 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473792.1 313288 R 321327 CDS YP_473793.1 86605030 3898054 315172..317649 1 NC_007775.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 317649 pheT 3898054 pheT Synechococcus sp. JA-3-3Ab phenylalanyl-tRNA synthetase subunit beta YP_473793.1 315172 D 321327 CDS YP_473794.1 86605031 3898055 317853..318755 1 NC_007775.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 318755 argB 3898055 argB Synechococcus sp. JA-3-3Ab acetylglutamate kinase YP_473794.1 317853 D 321327 CDS YP_473795.1 86605032 3898056 318965..320803 1 NC_007775.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease 320803 3898056 CYA_0311 Synechococcus sp. JA-3-3Ab ABC transporter permease YP_473795.1 318965 D 321327 CDS YP_473796.1 86605033 3898057 321183..321554 1 NC_007775.1 identified by similarity to GB:BAD79291.1; hypothetical protein 321554 3898057 CYA_0312 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473796.1 321183 D 321327 CDS YP_473797.1 86605034 3898058 321745..323256 1 NC_007775.1 identified by match to protein family HMM PF00004; AAA ATPase 323256 3898058 CYA_0313 Synechococcus sp. JA-3-3Ab AAA ATPase YP_473797.1 321745 D 321327 CDS YP_473798.1 86605035 3898059 323388..323738 1 NC_007775.1 identified by similarity to GB:BAC09429.1; match to protein family HMM PF06868; hypothetical protein 323738 3898059 CYA_0314 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473798.1 323388 D 321327 CDS YP_473799.1 86605036 3898060 complement(323857..325095) 1 NC_007775.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 325095 pgk 3898060 pgk Synechococcus sp. JA-3-3Ab phosphoglycerate kinase YP_473799.1 323857 R 321327 CDS YP_473800.1 86605037 3898022 325273..326691 1 NC_007775.1 identified by similarity to SP:P26294; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02731; phytoene desaturase 326691 pds 3898022 pds Synechococcus sp. JA-3-3Ab phytoene desaturase YP_473800.1 325273 D 321327 CDS YP_473801.1 86605038 3898023 326768..327703 1 NC_007775.1 identified by similarity to SP:P37294; match to protein family HMM PF00494; phytoene synthase 327703 crtB 3898023 crtB Synechococcus sp. JA-3-3Ab phytoene synthase YP_473801.1 326768 D 321327 CDS YP_473802.1 86605039 3898024 327727..328542 1 NC_007775.1 identified by match to protein family HMM PF01061; ABC-2 transporter, permease 328542 3898024 CYA_0319 Synechococcus sp. JA-3-3Ab ABC-2 transporter, permease YP_473802.1 327727 D 321327 CDS YP_473803.1 86605040 3898025 complement(328539..333596) 1 NC_007775.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase 333596 3898025 CYA_0318 Synechococcus sp. JA-3-3Ab DEAD/DEAH box helicase YP_473803.1 328539 R 321327 CDS YP_473804.1 86605041 3898026 complement(333689..333895) 1 NC_007775.1 hypothetical protein 333895 3898026 CYA_0320 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473804.1 333689 R 321327 CDS YP_473805.1 86605042 3898027 complement(333924..338501) 1 NC_007775.1 identified by match to protein family HMM PF04480; hypothetical protein 338501 3898027 CYA_0321 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473805.1 333924 R 321327 CDS YP_473806.1 86605043 3898028 complement(338498..341392) 1 NC_007775.1 identified by match to protein family HMM PF00271; helicase 341392 3898028 CYA_0322 Synechococcus sp. JA-3-3Ab helicase YP_473806.1 338498 R 321327 CDS YP_473807.1 86605044 3898029 341673..342188 1 NC_007775.1 identified by match to protein family HMM PF00027; cyclic nucleotide-binding protein, trunction 342188 3898029 CYA_0323 Synechococcus sp. JA-3-3Ab cyclic nucleotide-binding protein, trunction YP_473807.1 341673 D 321327 CDS YP_473808.1 86605045 3898030 342373..343392 1 NC_007775.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 343392 gap-2 3898030 gap-2 Synechococcus sp. JA-3-3Ab glyceraldehyde-3-phosphate dehydrogenase, type I YP_473808.1 342373 D 321327 CDS YP_473809.1 86605046 3898031 complement(343377..343979) 1 NC_007775.1 identified by match to protein family HMM PF02834; 2',5' RNA ligase 343979 3898031 CYA_0324 Synechococcus sp. JA-3-3Ab 2',5' RNA ligase YP_473809.1 343377 R 321327 CDS YP_473810.1 86605047 3898032 344149..344571 1 NC_007775.1 identified by similarity to PIR:JC7085; ferredoxin-like protein 344571 3898032 CYA_0327 Synechococcus sp. JA-3-3Ab ferredoxin-like protein YP_473810.1 344149 D 321327 CDS YP_473811.1 86605048 3898033 complement(344559..345191) 1 NC_007775.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase 345191 3898033 CYA_0326 Synechococcus sp. JA-3-3Ab 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_473811.1 344559 R 321327 CDS YP_473812.1 86605049 3898035 complement(346459..347148) 1 NC_007775.1 identified by match to protein family HMM PF05685; hypothetical protein 347148 3898035 CYA_0329 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473812.1 346459 R 321327 CDS YP_473813.1 86605050 3898036 347318..348421 1 NC_007775.1 identified by match to protein family HMM PF01266; FAD-dependent oxidoreductase 348421 3898036 CYA_0330 Synechococcus sp. JA-3-3Ab FAD-dependent oxidoreductase YP_473813.1 347318 D 321327 CDS YP_473814.1 86605051 3898037 348529..348828 1 NC_007775.1 identified by match to protein family HMM PF04839; hypothetical protein 348828 3898037 CYA_0331 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473814.1 348529 D 321327 CDS YP_473815.1 86605052 3898038 349032..350660 1 NC_007775.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth; chaperonin GroEL 350660 groEL 3898038 groEL Synechococcus sp. JA-3-3Ab chaperonin GroEL YP_473815.1 349032 D 321327 CDS YP_473816.1 86605053 3898039 complement(350698..352224) 1 NC_007775.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 352224 lysS 3898039 lysS Synechococcus sp. JA-3-3Ab lysyl-tRNA synthetase YP_473816.1 350698 R 321327 CDS YP_473817.1 86605054 3898040 complement(352271..353185) 1 NC_007775.1 identified by similarity to PIR:AC2464; match to protein family HMM PF05685; hypothetical protein 353185 3898040 CYA_0334 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473817.1 352271 R 321327 CDS YP_473818.1 86605055 3898003 complement(353548..354966) 1 NC_007775.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 354966 radA 3898003 radA Synechococcus sp. JA-3-3Ab DNA repair protein RadA YP_473818.1 353548 R 321327 CDS YP_473819.1 86605056 3898004 complement(355019..356155) 1 NC_007775.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 356155 aroC 3898004 aroC Synechococcus sp. JA-3-3Ab chorismate synthase YP_473819.1 355019 R 321327 CDS YP_473820.1 86605057 3898005 complement(356210..356944) 1 NC_007775.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 356944 3898005 CYA_0337 Synechococcus sp. JA-3-3Ab pantothenate kinase YP_473820.1 356210 R 321327 CDS YP_473821.1 86605058 3898006 complement(356934..357665) 1 NC_007775.1 identified by similarity to SP:Q8R8N9; match to protein family HMM PF01871; hypothetical protein 357665 3898006 CYA_0338 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473821.1 356934 R 321327 CDS YP_473822.1 86605059 3898007 complement(357668..358867) 1 NC_007775.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 358867 trpB 3898007 trpB Synechococcus sp. JA-3-3Ab tryptophan synthase subunit beta YP_473822.1 357668 R 321327 CDS YP_473823.1 86605060 3898008 359124..359483 1 NC_007775.1 identified by similarity to GB:BAD01972.1; hypothetical protein 359483 3898008 CYA_0340 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473823.1 359124 D 321327 CDS YP_473824.1 86605061 3898009 359627..360145 1 NC_007775.1 identified by similarity to GB:BAB48108.1; hypothetical protein 360145 3898009 CYA_0341 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473824.1 359627 D 321327 CDS YP_473825.1 86605062 3898010 360158..360754 1 NC_007775.1 identified by similarity to GB:BAC91744.1; hypothetical protein 360754 3898010 CYA_0342 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473825.1 360158 D 321327 CDS YP_473826.1 86605063 3898011 360754..362295 1 NC_007775.1 identified by match to protein family HMM PF00012; DnaK family protein 362295 3898011 CYA_0343 Synechococcus sp. JA-3-3Ab DnaK family protein YP_473826.1 360754 D 321327 CDS YP_473827.1 86605064 3898012 362387..362509 1 NC_007775.1 hypothetical protein 362509 3898012 CYA_0344 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473827.1 362387 D 321327 CDS YP_473828.1 86605065 3898013 complement(362789..364069) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 364069 3898013 CYA_0345 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_473828.1 362789 R 321327 CDS YP_473829.1 86605066 3898014 complement(363924..364541) 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 364541 3898014 CYA_0346 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_473829.1 363924 R 321327 CDS YP_473830.1 86605067 3898015 complement(364609..364743) 1 NC_007775.1 hypothetical protein 364743 3898015 CYA_0347 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473830.1 364609 R 321327 CDS YP_473831.1 86605068 3898016 365438..366295 1 NC_007775.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 366295 3898016 CYA_0348 Synechococcus sp. JA-3-3Ab HAD family hydrolase YP_473831.1 365438 D 321327 CDS YP_473832.1 86605069 3898017 366346..368466 1 NC_007775.1 identified by match to protein family HMM PF00580; UvrD/REP helicase domain-containing protein 368466 3898017 CYA_0349 Synechococcus sp. JA-3-3Ab UvrD/REP helicase domain-containing protein YP_473832.1 366346 D 321327 CDS YP_473833.1 86605070 3898018 368586..369452 1 NC_007775.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 369452 nusB 3898018 nusB Synechococcus sp. JA-3-3Ab transcription antitermination protein NusB YP_473833.1 368586 D 321327 CDS YP_473834.1 86605071 3898020 370022..370573 1 NC_007775.1 identified by match to protein family HMM PF03358; NADPH-dependent FMN reductase 370573 3898020 CYA_0352 Synechococcus sp. JA-3-3Ab NADPH-dependent FMN reductase YP_473834.1 370022 D 321327 CDS YP_473835.1 86605072 3898021 complement(370637..371056) 1 NC_007775.1 lipoprotein 371056 3898021 CYA_0353 Synechococcus sp. JA-3-3Ab lipoprotein YP_473835.1 370637 R 321327 CDS YP_473836.1 86605073 3897965 371225..372874 1 NC_007775.1 hypothetical protein 372874 3897965 CYA_0355 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473836.1 371225 D 321327 CDS YP_473837.1 86605074 3897966 complement(372868..374061) 1 NC_007775.1 identified by similarity to GB:CAA43914.1; match to protein family HMM PF00534; glycoside hydrolase family protein 374061 3897966 CYA_0354 Synechococcus sp. JA-3-3Ab glycoside hydrolase family protein YP_473837.1 372868 R 321327 CDS YP_473838.1 86605075 3897967 complement(374064..374477) 1 NC_007775.1 identified by similarity to GB:BAD78263.1; hypothetical protein 374477 3897967 CYA_0356 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473838.1 374064 R 321327 CDS YP_473839.1 86605076 3897968 complement(374567..375007) 1 NC_007775.1 hypothetical protein 375007 3897968 CYA_0357 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473839.1 374567 R 321327 CDS YP_473840.1 86605077 3897969 complement(375090..375971) 1 NC_007775.1 identified by match to protein family HMM PF00520; match to protein family HMM PF07885; cation transporter, voltage-gated ion channel cation transporter 375971 3897969 CYA_0358 Synechococcus sp. JA-3-3Ab cation transporter, voltage-gated ion channel cation transporter YP_473840.1 375090 R 321327 CDS YP_473841.1 86605078 3897970 376112..376705 1 NC_007775.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 376705 maf 3897970 maf Synechococcus sp. JA-3-3Ab Maf-like protein YP_473841.1 376112 D 321327 CDS YP_473842.1 86605079 3897971 complement(376702..378174) 1 NC_007775.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 378174 gatB 3897971 gatB Synechococcus sp. JA-3-3Ab aspartyl/glutamyl-tRNA amidotransferase subunit B YP_473842.1 376702 R 321327 CDS YP_473843.1 86605080 3897972 complement(378240..378395) 1 NC_007775.1 identified by similarity to PIR:AB1916; hypothetical protein 378395 3897972 CYA_0361 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473843.1 378240 R 321327 CDS YP_473844.1 86605081 3897973 complement(378672..378827) 1 NC_007775.1 identified by match to protein family HMM PF00708; acylphosphatase 378827 3897973 CYA_0362 Synechococcus sp. JA-3-3Ab acylphosphatase YP_473844.1 378672 R 321327 CDS YP_473845.1 86605082 3897974 complement(378824..379144) 1 NC_007775.1 hypothetical protein 379144 3897974 CYA_0363 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473845.1 378824 R 321327 CDS YP_473846.1 86605083 3897975 379184..380626 1 NC_007775.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 380626 3897975 CYA_0364 Synechococcus sp. JA-3-3Ab gamma-aminobutyraldehyde dehydrogenase YP_473846.1 379184 D 321327 CDS YP_473847.1 86605084 3897976 380752..382770 1 NC_007775.1 identified by match to protein family HMM PF01078; match to protein family HMM TIGR02031; magnesium chelatase, ATPase subunit D 382770 chlD 3897976 chlD Synechococcus sp. JA-3-3Ab magnesium chelatase, ATPase subunit D YP_473847.1 380752 D 321327 CDS YP_473848.1 86605085 3897977 382852..383601 1 NC_007775.1 identified by similarity to PIR:AC2382; hypothetical protein 383601 3897977 CYA_0366 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473848.1 382852 D 321327 CDS YP_473849.1 86605086 3897978 complement(383965..384408) 1 NC_007775.1 identified by match to protein family HMM PF00903; glyoxalase family protein 384408 3897978 CYA_0367 Synechococcus sp. JA-3-3Ab glyoxalase family protein YP_473849.1 383965 R 321327 CDS YP_473850.1 86605087 3897979 384547..385575 1 NC_007775.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 385575 mreB 3897979 mreB Synechococcus sp. JA-3-3Ab rod shape-determining protein MreB YP_473850.1 384547 D 321327 CDS YP_473851.1 86605088 3897980 385636..386379 1 NC_007775.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 386379 mreC 3897980 mreC Synechococcus sp. JA-3-3Ab rod shape-determining protein MreC YP_473851.1 385636 D 321327 CDS YP_473852.1 86605089 3897981 386366..386995 1 NC_007775.1 identified by match to protein family HMM PF04093; rod shape-determining protein MreD 386995 mreD 3897981 mreD Synechococcus sp. JA-3-3Ab rod shape-determining protein MreD YP_473852.1 386366 D 321327 CDS YP_473853.1 86605090 3897982 387283..387510 1 NC_007775.1 identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 387510 3897982 CYA_0371 Synechococcus sp. JA-3-3Ab iron-sulfur cluster-binding protein YP_473853.1 387283 D 321327 CDS YP_473854.1 86605091 3897983 complement(387549..388073) 1 NC_007775.1 hypothetical protein 388073 3897983 CYA_0372 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473854.1 387549 R 321327 CDS YP_473855.1 86605092 3897945 complement(388505..390457) 1 NC_007775.1 identified by similarity to GB:AAD42859.1; match to protein family HMM PF00069; match to protein family HMM PF07719; serine/threonine protein kinase 390457 3897945 CYA_0373 Synechococcus sp. JA-3-3Ab serine/threonine protein kinase YP_473855.1 388505 R 321327 CDS YP_473856.1 86605093 3897946 390588..391445 1 NC_007775.1 identified by match to protein family HMM PF00459; inositol monophosphate family protein 391445 3897946 CYA_0375 Synechococcus sp. JA-3-3Ab inositol monophosphate family protein YP_473856.1 390588 D 321327 CDS YP_473857.1 86605094 3897947 complement(391400..392383) 1 NC_007775.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 392383 3897947 CYA_0374 Synechococcus sp. JA-3-3Ab glycosyl transferase family protein YP_473857.1 391400 R 321327 CDS YP_473858.1 86605095 3897948 complement(392445..393533) 1 NC_007775.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 393533 hemE 3897948 hemE Synechococcus sp. JA-3-3Ab uroporphyrinogen decarboxylase YP_473858.1 392445 R 321327 CDS YP_473859.1 86605096 3897949 393758..394651 1 NC_007775.1 identified by similarity to GB:BAA82613.1; match to protein family HMM PF00348; geranylgeranyl diphosphate synthase 394651 crtE 3897949 crtE Synechococcus sp. JA-3-3Ab geranylgeranyl diphosphate synthase YP_473859.1 393758 D 321327 CDS YP_473860.1 86605097 3897950 394648..395193 1 NC_007775.1 identified by similarity to GB:BAC07572.1; match to protein family HMM PF02681; hypothetical protein 395193 3897950 CYA_0378 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473860.1 394648 D 321327 CDS YP_473861.1 86605098 3897951 395236..395853 1 NC_007775.1 hypothetical protein 395853 3897951 CYA_0379 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473861.1 395236 D 321327 CDS YP_473862.1 86605099 3897952 395885..396721 1 NC_007775.1 identified by similarity to SP:Q9PD85; hypothetical protein 396721 3897952 CYA_0380 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473862.1 395885 D 321327 CDS YP_473863.1 86605100 3897953 complement(396773..397039) 1 NC_007775.1 identified by similarity to GB:BAC09330.1; hypothetical protein 397039 3897953 CYA_0381 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473863.1 396773 R 321327 CDS YP_473864.1 86605101 3897954 397453..398280 1 NC_007775.1 identified by similarity to PIR:S75306; match to protein family HMM PF07082; hypothetical protein 398280 3897954 CYA_0383 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473864.1 397453 D 321327 CDS YP_473865.1 86605102 3897955 complement(398277..398516) 1 NC_007775.1 identified by similarity to PIR:AI2167; hypothetical protein 398516 3897955 CYA_0382 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473865.1 398277 R 321327 CDS YP_473866.1 86605103 3897956 398920..399153 1 NC_007775.1 hypothetical protein 399153 3897956 CYA_0384 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473866.1 398920 D 321327 CDS YP_473867.1 86605104 3897957 complement(399356..400294) 1 NC_007775.1 hypothetical protein 400294 3897957 CYA_0385 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473867.1 399356 R 321327 CDS YP_473868.1 86605105 3897958 complement(400816..401931) 1 NC_007775.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 401931 ribD 3897958 ribD Synechococcus sp. JA-3-3Ab riboflavin biosynthesis protein RibD YP_473868.1 400816 R 321327 CDS YP_473869.1 86605106 3897959 402053..403651 1 NC_007775.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 403651 pgi 3897959 pgi Synechococcus sp. JA-3-3Ab glucose-6-phosphate isomerase YP_473869.1 402053 D 321327 CDS YP_473870.1 86605107 3897960 403771..404922 1 NC_007775.1 identified by match to protein family HMM TIGR00534; opcA protein 404922 opcA 3897960 opcA Synechococcus sp. JA-3-3Ab opcA protein YP_473870.1 403771 D 321327 CDS YP_473871.1 86605108 3897961 complement(405100..405408) 1 NC_007775.1 identified by similarity to SP:P54225; CAB/ELIP/HLIP family protein 405408 3897961 CYA_0389 Synechococcus sp. JA-3-3Ab CAB/ELIP/HLIP family protein YP_473871.1 405100 R 321327 CDS YP_473872.1 86605109 3897962 complement(405519..405737) 1 NC_007775.1 CAB/ELIP/HLIP family protein 405737 3897962 CYA_0390 Synechococcus sp. JA-3-3Ab CAB/ELIP/HLIP family protein YP_473872.1 405519 R 321327 CDS YP_473873.1 86605110 3897963 405906..407195 1 NC_007775.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979; SufS family cysteine desulfurase 407195 3897963 CYA_0391 Synechococcus sp. JA-3-3Ab SufS family cysteine desulfurase YP_473873.1 405906 D 321327 CDS YP_473874.1 86605111 3897964 407196..408311 1 NC_007775.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 408311 3897964 CYA_0392 Synechococcus sp. JA-3-3Ab aldo/keto reductase family oxidoreductase YP_473874.1 407196 D 321327 CDS YP_473875.1 86605112 3897907 complement(408404..408787) 1 NC_007775.1 hypothetical protein 408787 3897907 CYA_0393 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473875.1 408404 R 321327 CDS YP_473876.1 86605113 3897908 408911..409588 1 NC_007775.1 hypothetical protein 409588 3897908 CYA_0394 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473876.1 408911 D 321327 CDS YP_473877.1 86605114 3897909 409596..410339 1 NC_007775.1 identified by similarity to GB:BAC89907.1; hypothetical protein 410339 3897909 CYA_0396 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473877.1 409596 D 321327 CDS YP_473878.1 86605115 3897910 complement(410293..411573) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 411573 3897910 CYA_0395 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_473878.1 410293 R 321327 CDS YP_473879.1 86605116 3897911 complement(411428..412021) 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 412021 3897911 CYA_0397 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_473879.1 411428 R 321327 CDS YP_473880.1 86605117 3897912 412218..412985 1 NC_007775.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 412985 tpiA 3897912 tpiA Synechococcus sp. JA-3-3Ab triosephosphate isomerase YP_473880.1 412218 D 321327 CDS YP_473881.1 86605118 3897913 complement(412991..415792) 1 NC_007775.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02401; malto-oligosyltrehalose synthase 415792 treY 3897913 treY Synechococcus sp. JA-3-3Ab malto-oligosyltrehalose synthase YP_473881.1 412991 R 321327 CDS YP_473882.1 86605119 3897914 415943..416356 1 NC_007775.1 hypothetical protein 416356 3897914 CYA_0400 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473882.1 415943 D 321327 CDS YP_473883.1 86605120 3897915 416555..417418 1 NC_007775.1 identified by match to protein family HMM PF01435; M48A family peptidase 417418 3897915 CYA_0401 Synechococcus sp. JA-3-3Ab M48A family peptidase YP_473883.1 416555 D 321327 CDS YP_473884.1 86605121 3897916 417443..418339 1 NC_007775.1 identified by match to protein family HMM PF00294; PfkB family kinase 418339 3897916 CYA_0402 Synechococcus sp. JA-3-3Ab PfkB family kinase YP_473884.1 417443 D 321327 CDS YP_473885.1 86605122 3897917 complement(418343..420067) 1 NC_007775.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease 420067 3897917 CYA_0403 Synechococcus sp. JA-3-3Ab ABC transporter permease YP_473885.1 418343 R 321327 CDS YP_473886.1 86605123 3897918 complement(420172..420726) 1 NC_007775.1 hypothetical protein 420726 3897918 CYA_0404 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473886.1 420172 R 321327 CDS YP_473887.1 86605124 3897919 complement(420789..421748) 1 NC_007775.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 421748 panE-1 3897919 panE-1 Synechococcus sp. JA-3-3Ab 2-dehydropantoate 2-reductase YP_473887.1 420789 R 321327 CDS YP_473888.1 86605125 3897920 complement(421806..422360) 1 NC_007775.1 identified by similarity to SP:P39765; match to protein family HMM PF00156; pyrR bifunctional protein 422360 pyrR 3897920 pyrR Synechococcus sp. JA-3-3Ab pyrR bifunctional protein YP_473888.1 421806 R 321327 CDS YP_473889.1 86605126 3897921 422501..423031 1 NC_007775.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 423031 3897921 CYA_0407 Synechococcus sp. JA-3-3Ab pentapeptide repeat-containing protein YP_473889.1 422501 D 321327 CDS YP_473890.1 86605127 3897922 complement(423116..423829) 1 NC_007775.1 identified by match to protein family HMM PF01126; heme oxygenase 423829 3897922 CYA_0408 Synechococcus sp. JA-3-3Ab heme oxygenase YP_473890.1 423116 R 321327 CDS YP_473891.1 86605128 3897923 424423..427824 1 NC_007775.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 427824 rpoB 3897923 rpoB Synechococcus sp. JA-3-3Ab DNA-directed RNA polymerase subunit beta YP_473891.1 424423 D 321327 CDS YP_473892.1 86605129 3897924 427924..429807 1 NC_007775.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; DNA-directed RNA polymerase subunit gamma 429807 rpoC1 3897924 rpoC1 Synechococcus sp. JA-3-3Ab DNA-directed RNA polymerase subunit gamma YP_473892.1 427924 D 321327 CDS YP_473893.1 86605130 3897925 429897..433805 1 NC_007775.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 433805 rpoC2 3897925 rpoC2 Synechococcus sp. JA-3-3Ab DNA-directed RNA polymerase subunit beta' YP_473893.1 429897 D 321327 CDS YP_473894.1 86605131 3897887 433786..434304 1 NC_007775.1 uracil-DNA glycosylase family protein 434304 3897887 CYA_0412 Synechococcus sp. JA-3-3Ab uracil-DNA glycosylase family protein YP_473894.1 433786 D 321327 CDS YP_473895.1 86605132 3897888 complement(434337..434996) 1 NC_007775.1 identified by similarity to SP:P25052; match to protein family HMM PF03070; transcriptional activator TenA 434996 3897888 CYA_0413 Synechococcus sp. JA-3-3Ab transcriptional activator TenA YP_473895.1 434337 R 321327 CDS YP_473896.1 86605133 3897889 complement(435204..436229) 1 NC_007775.1 identified by similarity to GB:BAC91086.1; hypothetical protein 436229 3897889 CYA_0414 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473896.1 435204 R 321327 CDS YP_473897.1 86605134 3897890 complement(436363..437094) 1 NC_007775.1 identified by similarity to GB:BAC91087.1; hypothetical protein 437094 3897890 CYA_0415 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473897.1 436363 R 321327 CDS YP_473898.1 86605135 3897891 complement(437251..437646) 1 NC_007775.1 hypothetical protein 437646 3897891 CYA_0416 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473898.1 437251 R 321327 CDS YP_473899.1 86605136 3897892 437290..437601 1 NC_007775.1 hypothetical protein 437601 3897892 CYA_0417 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473899.1 437290 D 321327 CDS YP_473900.1 86605137 3897893 complement(437609..438103) 1 NC_007775.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 438103 3897893 CYA_0418 Synechococcus sp. JA-3-3Ab pentapeptide repeat-containing protein YP_473900.1 437609 R 321327 CDS YP_473901.1 86605138 3897894 438313..438606 1 NC_007775.1 identified by similarity to GB:CAE11908.1; gas vesicle protein V 438606 gvpV 3897894 gvpV Synechococcus sp. JA-3-3Ab gas vesicle protein V YP_473901.1 438313 D 321327 CDS YP_473902.1 86605139 3897895 438981..440414 1 NC_007775.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 440414 atpD 3897895 atpD Synechococcus sp. JA-3-3Ab F0F1 ATP synthase subunit beta YP_473902.1 438981 D 321327 CDS YP_473903.1 86605140 3897896 complement(440425..441165) 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 441165 3897896 CYA_0421 Synechococcus sp. JA-3-3Ab DNA-binding response regulator YP_473903.1 440425 R 321327 CDS YP_473904.1 86605141 3897897 complement(441169..442080) 1 NC_007775.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole methylase family protein 442080 3897897 CYA_0422 Synechococcus sp. JA-3-3Ab tetrapyrrole methylase family protein YP_473904.1 441169 R 321327 CDS YP_473905.1 86605142 3897898 442169..442621 1 NC_007775.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; transcriptional regulator 442621 3897898 CYA_0423 Synechococcus sp. JA-3-3Ab transcriptional regulator YP_473905.1 442169 D 321327 CDS YP_473906.1 86605143 3897899 442644..443633 1 NC_007775.1 identified by match to protein family HMM PF03186; match to protein family HMM TIGR00380; cobalamin biosynthesis protein CobD 443633 cobD-1 3897899 cobD-1 Synechococcus sp. JA-3-3Ab cobalamin biosynthesis protein CobD YP_473906.1 442644 D 321327 CDS YP_473907.1 86605144 3897900 complement(443916..444200) 1 NC_007775.1 hypothetical protein 444200 3897900 CYA_0425 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473907.1 443916 R 321327 CDS YP_473908.1 86605145 3897901 complement(444197..444757) 1 NC_007775.1 hypothetical protein 444757 3897901 CYA_0426 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473908.1 444197 R 321327 CDS YP_473909.1 86605146 3897902 complement(444839..446062) 1 NC_007775.1 identified by similarity to SP:Q06721; match to protein family HMM PF00004; match to protein family HMM PF00101; ribulose bisphosphate carboxylase/oxygenase activase 446062 rca 3897902 rca Synechococcus sp. JA-3-3Ab ribulose bisphosphate carboxylase/oxygenase activase YP_473909.1 444839 R 321327 CDS YP_473910.1 86605147 3897903 446370..447848 1 NC_007775.1 identified by similarity to GB:BAA10332.1; match to protein family HMM PF00999; high-affinity Na+/H+ antiporter 447848 3897903 CYA_0428 Synechococcus sp. JA-3-3Ab high-affinity Na+/H+ antiporter YP_473910.1 446370 D 321327 CDS YP_473911.1 86605148 3897904 complement(447850..448440) 1 NC_007775.1 identified by match to protein family HMM PF00498; FHA domain-containing protein 448440 3897904 CYA_0429 Synechococcus sp. JA-3-3Ab FHA domain-containing protein YP_473911.1 447850 R 321327 CDS YP_473912.1 86605149 3897905 448546..448764 1 NC_007775.1 identified by similarity to PIR:S76577; hypothetical protein 448764 3897905 CYA_0430 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473912.1 448546 D 321327 CDS YP_473913.1 86605150 3897906 448795..449529 1 NC_007775.1 hypothetical protein 449529 3897906 CYA_0431 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473913.1 448795 D 321327 CDS YP_473914.1 86605151 3897559 449651..450451 1 NC_007775.1 hypothetical protein 450451 3897559 CYA_0432 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473914.1 449651 D 321327 CDS YP_473915.1 86605152 3897560 450616..450858 1 NC_007775.1 hypothetical protein 450858 3897560 CYA_0433 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473915.1 450616 D 321327 CDS YP_473916.1 86605153 3897561 complement(451199..454399) 1 NC_007775.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; hydrophobe/amphiphile efflux-1 (HAE1) family protein 454399 3897561 CYA_0434 Synechococcus sp. JA-3-3Ab hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_473916.1 451199 R 321327 CDS YP_473917.1 86605154 3897562 complement(454467..455750) 1 NC_007775.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 455750 3897562 CYA_0435 Synechococcus sp. JA-3-3Ab RND family efflux transporter MFP subunit YP_473917.1 454467 R 321327 CDS YP_473918.1 86605155 3897563 complement(455921..457171) 1 NC_007775.1 identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc6, orfB transposase 457171 3897563 CYA_0436 Synechococcus sp. JA-3-3Ab ISSoc6, orfB transposase YP_473918.1 455921 R 321327 CDS YP_473919.1 86605156 3897564 457222..457626 1 NC_007775.1 identified by similarity to PIR:AD2227; match to protein family HMM PF01797; ISSoc6, orfA transposase 457626 3897564 CYA_0437 Synechococcus sp. JA-3-3Ab ISSoc6, orfA transposase YP_473919.1 457222 D 321327 CDS YP_473920.1 86605157 3897565 457780..458628 1 NC_007775.1 hypothetical protein 458628 3897565 CYA_0438 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473920.1 457780 D 321327 CDS YP_473921.1 86605158 3897566 complement(458677..459972) 1 NC_007775.1 hypothetical protein 459972 3897566 CYA_0439 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473921.1 458677 R 321327 CDS YP_473922.1 86605159 3897567 complement(460003..461085) 1 NC_007775.1 hypothetical protein 461085 3897567 CYA_0440 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473922.1 460003 R 321327 CDS YP_473923.1 86605160 3897568 complement(461090..461983) 1 NC_007775.1 identified by match to protein family HMM PF00892; hypothetical protein 461983 3897568 CYA_0441 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473923.1 461090 R 321327 CDS YP_473924.1 86605161 3897569 complement(461983..462321) 1 NC_007775.1 identified by similarity to GB:CAD14216.1; hypothetical protein 462321 3897569 CYA_0442 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473924.1 461983 R 321327 CDS YP_473925.1 86605162 3897570 complement(462386..462718) 1 NC_007775.1 hypothetical protein 462718 3897570 CYA_0443 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473925.1 462386 R 321327 CDS YP_473926.1 86605163 3897571 complement(462769..463866) 1 NC_007775.1 M8 family peptidase 463866 3897571 CYA_0444 Synechococcus sp. JA-3-3Ab M8 family peptidase YP_473926.1 462769 R 321327 CDS YP_473927.1 86605164 3897572 complement(464359..464856) 1 NC_007775.1 hypothetical protein 464856 3897572 CYA_0445 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473927.1 464359 R 321327 CDS YP_473928.1 86605165 3897573 complement(465017..465163) 1 NC_007775.1 hypothetical protein 465163 3897573 CYA_0446 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473928.1 465017 R 321327 CDS YP_473929.1 86605166 3897574 465509..467716 1 NC_007775.1 identified by match to protein family HMM PF02779; match to protein family HMM PF03894; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase family protein 467716 3897574 CYA_0447 Synechococcus sp. JA-3-3Ab D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase family protein YP_473929.1 465509 D 321327 CDS YP_473930.1 86605167 3897575 467763..469085 1 NC_007775.1 identified by match to protein family HMM PF01656; CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein 469085 3897575 CYA_0448 Synechococcus sp. JA-3-3Ab CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein YP_473930.1 467763 D 321327 CDS YP_473931.1 86605168 3897576 469078..469722 1 NC_007775.1 identified by similarity to PIR:S76694; hypothetical protein 469722 3897576 CYA_0449 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473931.1 469078 D 321327 CDS YP_473932.1 86605169 3897577 complement(469759..470304) 1 NC_007775.1 identified by similarity to PIR:AC1932; hypothetical protein 470304 3897577 CYA_0450 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473932.1 469759 R 321327 CDS YP_473933.1 86605170 3897501 complement(470548..470958) 1 NC_007775.1 identified by match to protein family HMM PF01724; hypothetical protein 470958 3897501 CYA_0452 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473933.1 470548 R 321327 CDS YP_473934.1 86605171 3897502 470890..471030 1 NC_007775.1 hypothetical protein 471030 3897502 CYA_0453 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473934.1 470890 D 321327 CDS YP_473935.1 86605172 3897503 complement(471065..471580) 1 NC_007775.1 identified by match to protein family HMM TIGR02652; hypothetical protein 471580 3897503 CYA_0454 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473935.1 471065 R 321327 CDS YP_473936.1 86605173 3897504 complement(471577..471714) 1 NC_007775.1 hypothetical protein 471714 3897504 CYA_0455 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473936.1 471577 R 321327 CDS YP_473937.1 86605174 3897505 471902..472375 1 NC_007775.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 472375 3897505 CYA_0456 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473937.1 471902 D 321327 CDS YP_473938.1 86605175 3897506 472535..473902 1 NC_007775.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 473902 nusA 3897506 nusA Synechococcus sp. JA-3-3Ab transcription elongation factor NusA YP_473938.1 472535 D 321327 CDS YP_473939.1 86605176 3897507 473958..474605 1 NC_007775.1 identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421; aromatic acid decarboxylase 474605 3897507 CYA_0458 Synechococcus sp. JA-3-3Ab aromatic acid decarboxylase YP_473939.1 473958 D 321327 CDS YP_473940.1 86605177 3897508 complement(474747..475817) 1 NC_007775.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 475817 3897508 CYA_0459 Synechococcus sp. JA-3-3Ab alpha/beta fold family hydrolase YP_473940.1 474747 R 321327 CDS YP_473941.1 86605178 3897509 476202..476321 1 NC_007775.1 hypothetical protein 476321 3897509 CYA_0460 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473941.1 476202 D 321327 CDS YP_473942.1 86605179 3897510 476311..476940 1 NC_007775.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase 476940 cobH-1 3897510 cobH-1 Synechococcus sp. JA-3-3Ab precorrin-8X methylmutase YP_473942.1 476311 D 321327 CDS YP_473943.1 86605180 3897511 476947..477861 1 NC_007775.1 hypothetical protein 477861 3897511 CYA_0462 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473943.1 476947 D 321327 CDS YP_473944.1 86605181 3897512 477862..479121 1 NC_007775.1 identified by match to protein family HMM PF00590; match to protein family HMM PF02390; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiE/T subunits 479121 cbiE/cbiT 3897512 cbiE/cbiT Synechococcus sp. JA-3-3Ab precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiE/T subunits YP_473944.1 477862 D 321327 CDS YP_473945.1 86605182 3897513 complement(479156..479752) 1 NC_007775.1 identified by similarity to PIR:AH1835; match to protein family HMM PF01936; hypothetical protein 479752 3897513 CYA_0464 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473945.1 479156 R 321327 CDS YP_473946.1 86605183 3897514 479943..480662 1 NC_007775.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 480662 sfsA 3897514 sfsA Synechococcus sp. JA-3-3Ab sugar fermentation stimulation protein A YP_473946.1 479943 D 321327 CDS YP_473947.1 86605184 3897515 480687..481472 1 NC_007775.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 481472 xth 3897515 xth Synechococcus sp. JA-3-3Ab exodeoxyribonuclease III YP_473947.1 480687 D 321327 CDS YP_473948.1 86605185 3897516 481554..482228 1 NC_007775.1 identified by similarity to SP:P27110; match to protein family HMM PF01625; match to protein family HMM TIGR00401; methionine-S-sulfoxide reductase 482228 msrA 3897516 msrA Synechococcus sp. JA-3-3Ab methionine-S-sulfoxide reductase YP_473948.1 481554 D 321327 CDS YP_473949.1 86605186 3897517 complement(482242..483081) 1 NC_007775.1 identified by similarity to SP:P27370; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140; sulfate ABC transporter, permease protein CysW 483081 cysW 3897517 cysW Synechococcus sp. JA-3-3Ab sulfate ABC transporter, permease protein CysW YP_473949.1 482242 R 321327 CDS YP_473950.1 86605187 3897518 complement(483071..483883) 1 NC_007775.1 identified by similarity to SP:P27367; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139; sulfate ABC transporter, permease protein CysT 483883 cysT 3897518 cysT Synechococcus sp. JA-3-3Ab sulfate ABC transporter, permease protein CysT YP_473950.1 483071 R 321327 CDS YP_473951.1 86605188 3897481 complement(483890..484933) 1 NC_007775.1 identified by similarity to SP:P14788; match to protein family HMM PF00005; match to protein family HMM TIGR00968; sulfate transport system ATP-binding protein 484933 cysA 3897481 cysA Synechococcus sp. JA-3-3Ab sulfate transport system ATP-binding protein YP_473951.1 483890 R 321327 CDS YP_473952.1 86605189 3897482 complement(485108..486127) 1 NC_007775.1 identified by similarity to SP:P06997; match to protein family HMM PF01547; match to protein family HMM TIGR00971; sulfate ABC transporter, sulfate-binding protein 486127 sbp 3897482 sbp Synechococcus sp. JA-3-3Ab sulfate ABC transporter, sulfate-binding protein YP_473952.1 485108 R 321327 CDS YP_473953.1 86605190 3897483 complement(486236..489031) 1 NC_007775.1 identified by similarity to SP:P76594; match to protein family HMM PF00583; match to protein family HMM PF02629; acetyltransferase 489031 3897483 CYA_0472 Synechococcus sp. JA-3-3Ab acetyltransferase YP_473953.1 486236 R 321327 CDS YP_473954.1 86605191 3897484 complement(489057..491687) 1 NC_007775.1 identified by similarity to SP:P17547; match to protein family HMM PF00171; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 491687 adhE 3897484 adhE Synechococcus sp. JA-3-3Ab bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_473954.1 489057 R 321327 CDS YP_473955.1 86605192 3897485 complement(491778..492188) 1 NC_007775.1 identified by match to protein family HMM PF02566; OsmC family protein 492188 3897485 CYA_0474 Synechococcus sp. JA-3-3Ab OsmC family protein YP_473955.1 491778 R 321327 CDS YP_473956.1 86605193 3897486 complement(492370..493122) 1 NC_007775.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493; pyruvate formate-lyase activating enzyme 493122 pflA 3897486 pflA Synechococcus sp. JA-3-3Ab pyruvate formate-lyase activating enzyme YP_473956.1 492370 R 321327 CDS YP_473957.1 86605194 3897487 complement(493284..493661) 1 NC_007775.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 493661 3897487 CYA_0476 Synechococcus sp. JA-3-3Ab pentapeptide repeat-containing protein YP_473957.1 493284 R 321327 CDS YP_473958.1 86605195 3897488 complement(493749..496055) 1 NC_007775.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase 496055 pflB 3897488 pflB Synechococcus sp. JA-3-3Ab formate acetyltransferase YP_473958.1 493749 R 321327 CDS YP_473959.1 86605196 3897489 496453..497505 1 NC_007775.1 identified by match to protein family HMM PF00903; 4-hydroxyphenylpyruvate dioxygenase 497505 3897489 CYA_0478 Synechococcus sp. JA-3-3Ab 4-hydroxyphenylpyruvate dioxygenase YP_473959.1 496453 D 321327 CDS YP_473960.1 86605197 3897490 complement(497587..497952) 1 NC_007775.1 identified by match to protein family HMM PF00072; response regulator 497952 3897490 CYA_0479 Synechococcus sp. JA-3-3Ab response regulator YP_473960.1 497587 R 321327 CDS YP_473961.1 86605198 3897491 complement(498264..499196) 1 NC_007775.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 499196 3897491 CYA_0480 Synechococcus sp. JA-3-3Ab NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_473961.1 498264 R 321327 CDS YP_473962.1 86605199 3897492 499316..500221 1 NC_007775.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 500221 3897492 CYA_0481 Synechococcus sp. JA-3-3Ab alpha/beta fold family hydrolase YP_473962.1 499316 D 321327 CDS YP_473963.1 86605200 3897493 500300..500689 1 NC_007775.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 500689 gcvH 3897493 gcvH Synechococcus sp. JA-3-3Ab glycine cleavage system protein H YP_473963.1 500300 D 321327 CDS YP_473964.1 86605201 3897494 complement(500693..501478) 1 NC_007775.1 identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 501478 3897494 CYA_0483 Synechococcus sp. JA-3-3Ab diguanylate cyclase YP_473964.1 500693 R 321327 CDS YP_473965.1 86605202 3897495 complement(501723..502670) 1 NC_007775.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein 502670 3897495 CYA_0484 Synechococcus sp. JA-3-3Ab NAD-dependent epimerase/dehydratase family protein YP_473965.1 501723 R 321327 CDS YP_473966.1 86605203 3897496 complement(502667..504085) 1 NC_007775.1 identified by similarity to SP:O32271; match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF03720; match to protein family HMM PF03721; UDP-glucose dehydrogenase 504085 3897496 CYA_0485 Synechococcus sp. JA-3-3Ab UDP-glucose dehydrogenase YP_473966.1 502667 R 321327 CDS YP_473967.1 86605204 3897497 504227..505141 1 NC_007775.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation transporter 505141 3897497 CYA_0486 Synechococcus sp. JA-3-3Ab cation transporter YP_473967.1 504227 D 321327 CDS YP_473968.1 86605205 3897498 505488..505664 1 NC_007775.1 hypothetical protein 505664 3897498 CYA_0487 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473968.1 505488 D 321327 CDS YP_473969.1 86605206 3897499 505954..506490 1 NC_007775.1 identified by match to protein family HMM PF01844; HNH endonuclease domain-containing protein 506490 3897499 CYA_0488 Synechococcus sp. JA-3-3Ab HNH endonuclease domain-containing protein YP_473969.1 505954 D 321327 CDS YP_473970.1 86605207 3897442 complement(506500..507435) 1 NC_007775.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 507435 3897442 CYA_0489 Synechococcus sp. JA-3-3Ab alpha/beta fold family hydrolase YP_473970.1 506500 R 321327 CDS YP_473971.1 86605208 3897443 507552..508166 1 NC_007775.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 508166 ruvA 3897443 ruvA Synechococcus sp. JA-3-3Ab Holliday junction DNA helicase RuvA YP_473971.1 507552 D 321327 CDS YP_473972.1 86605209 3897444 508163..508786 1 NC_007775.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482; nicotinate (nicotinamide) nucleotide adenylyltransferase 508786 nadD 3897444 nadD Synechococcus sp. JA-3-3Ab nicotinate (nicotinamide) nucleotide adenylyltransferase YP_473972.1 508163 D 321327 CDS YP_473973.1 86605210 3897445 complement(508947..509195) 1 NC_007775.1 part of the core of the reaction center of photosystem I; photosystem I subunit VII 509195 psaC 3897445 psaC Synechococcus sp. JA-3-3Ab photosystem I subunit VII YP_473973.1 508947 R 321327 CDS YP_473974.1 86605211 3897446 509434..509811 1 NC_007775.1 hypothetical protein 509811 3897446 CYA_0493 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473974.1 509434 D 321327 CDS YP_473975.1 86605212 3897447 complement(509831..510205) 1 NC_007775.1 identified by similarity to PIR:AB2257; hypothetical protein 510205 3897447 CYA_0494 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473975.1 509831 R 321327 CDS YP_473976.1 86605213 3897448 complement(510208..510849) 1 NC_007775.1 hypothetical protein 510849 3897448 CYA_0495 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473976.1 510208 R 321327 CDS YP_473977.1 86605214 3897449 complement(510982..512283) 1 NC_007775.1 identified by similarity to SP:P07004; gamma-glutamyl phosphate reductase 512283 3897449 CYA_0496 Synechococcus sp. JA-3-3Ab gamma-glutamyl phosphate reductase YP_473977.1 510982 R 321327 CDS YP_473978.1 86605215 3897450 complement(512401..512853) 1 NC_007775.1 hypothetical protein 512853 3897450 CYA_0497 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473978.1 512401 R 321327 CDS YP_473979.1 86605216 3897451 complement(512911..514188) 1 NC_007775.1 hypothetical protein 514188 3897451 CYA_0498 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473979.1 512911 R 321327 CDS YP_473980.1 86605217 3897452 complement(514185..515624) 1 NC_007775.1 identified by match to protein family HMM PF01593; hypothetical protein 515624 3897452 CYA_0499 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473980.1 514185 R 321327 CDS YP_473981.1 86605218 3897453 515750..516856 1 NC_007775.1 identified by match to protein family HMM PF04107; match to protein family HMM TIGR02048; glutamate--cysteine ligase 516856 3897453 CYA_0500 Synechococcus sp. JA-3-3Ab glutamate--cysteine ligase YP_473981.1 515750 D 321327 CDS YP_473982.1 86605219 3897455 complement(518175..519785) 1 NC_007775.1 identified by match to protein family HMM PF00582; match to protein family HMM PF00999; transporter, monovalent cation:proton antiporter-2 (CPA2) family/universal stress family protein 519785 3897455 CYA_0502 Synechococcus sp. JA-3-3Ab transporter, monovalent cation:proton antiporter-2 (CPA2) family/universal stress family protein YP_473982.1 518175 R 321327 CDS YP_473983.1 86605220 3897456 complement(520081..520668) 1 NC_007775.1 identified by similarity to GB:BAC91438.1; hypothetical protein 520668 3897456 CYA_0503 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473983.1 520081 R 321327 CDS YP_473984.1 86605221 3897457 complement(520709..521404) 1 NC_007775.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 521404 hisIE 3897457 hisIE Synechococcus sp. JA-3-3Ab bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase YP_473984.1 520709 R 321327 CDS YP_473985.1 86605222 3897458 complement(521665..523812) 1 NC_007775.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 523812 3897458 CYA_0505 Synechococcus sp. JA-3-3Ab polysaccharide deacetylase family protein YP_473985.1 521665 R 321327 CDS YP_473986.1 86605223 3897459 complement(524217..524708) 1 NC_007775.1 identified by match to protein family HMM PF01383; phycobilisome linker polypeptide, phycocyanin-associated, rod 524708 3897459 CYA_0506 Synechococcus sp. JA-3-3Ab phycobilisome linker polypeptide, phycocyanin-associated, rod YP_473986.1 524217 R 321327 CDS YP_473987.1 86605224 3897460 524898..525431 1 NC_007775.1 hypothetical protein 525431 3897460 CYA_0507 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473987.1 524898 D 321327 CDS YP_473990.1 86605227 3897424 527198..529402 1 NC_007775.1 identified by match to protein family HMM PF02514; CobN/magnesium chelatase domain-containing protein 529402 3897424 CYA_0510 Synechococcus sp. JA-3-3Ab CobN/magnesium chelatase domain-containing protein YP_473990.1 527198 D 321327 CDS YP_473991.1 86605228 3897425 complement(529494..529808) 1 NC_007775.1 identified by match to protein family HMM PF00076; RNA-binding protein 529808 3897425 CYA_0511 Synechococcus sp. JA-3-3Ab RNA-binding protein YP_473991.1 529494 R 321327 CDS YP_473992.1 86605229 3897426 complement(530063..532801) 1 NC_007775.1 identified by match to protein family HMM PF00133; match to protein family HMM TIGR00422; valyl-tRNA synthetase 532801 valS 3897426 valS Synechococcus sp. JA-3-3Ab valyl-tRNA synthetase YP_473992.1 530063 R 321327 CDS YP_473993.1 86605230 3897427 532955..533377 1 NC_007775.1 identified by match to protein family HMM PF00376; MerR family transcriptional regulator 533377 3897427 CYA_0513 Synechococcus sp. JA-3-3Ab MerR family transcriptional regulator YP_473993.1 532955 D 321327 CDS YP_473994.1 86605231 3897428 533412..533570 1 NC_007775.1 lipoprotein 533570 3897428 CYA_0514 Synechococcus sp. JA-3-3Ab lipoprotein YP_473994.1 533412 D 321327 CDS YP_473995.1 86605232 3897429 533422..533835 1 NC_007775.1 identified by similarity to GB:BAC09437.1; hypothetical protein 533835 3897429 CYA_0515 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473995.1 533422 D 321327 CDS YP_473996.1 86605233 3897430 complement(533975..534796) 1 NC_007775.1 identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 534796 cdsA 3897430 cdsA Synechococcus sp. JA-3-3Ab phosphatidate cytidylyltransferase YP_473996.1 533975 R 321327 CDS YP_473997.1 86605234 3897431 complement(534777..534947) 1 NC_007775.1 hypothetical protein 534947 3897431 CYA_0517 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473997.1 534777 R 321327 CDS YP_473998.1 86605235 3897432 534953..535072 1 NC_007775.1 hypothetical protein 535072 3897432 CYA_0518 Synechococcus sp. JA-3-3Ab hypothetical protein YP_473998.1 534953 D 321327 CDS YP_473999.1 86605236 3897433 535116..536117 1 NC_007775.1 identified by match to protein family HMM PF00676; dehydrogenase E1 component subunit alpha 536117 3897433 CYA_0519 Synechococcus sp. JA-3-3Ab dehydrogenase E1 component subunit alpha YP_473999.1 535116 D 321327 CDS YP_474000.1 86605237 3897434 536338..537918 1 NC_007775.1 shuttles electrons from NAD(P)H, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunit D, with NdhB and NdhF are core membrane components; NAD(P)H-quinone oxidoreductase subunit 4 537918 3897434 CYA_0520 Synechococcus sp. JA-3-3Ab NAD(P)H-quinone oxidoreductase subunit 4 YP_474000.1 536338 D 321327 CDS YP_474001.1 86605238 3897435 complement(538113..538292) 1 NC_007775.1 hypothetical protein 538292 3897435 CYA_0521 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474001.1 538113 R 321327 CDS YP_474002.1 86605239 3897436 complement(538610..539299) 1 NC_007775.1 identified by match to protein family HMM PF02830; V4R domain-containing protein 539299 3897436 CYA_0522 Synechococcus sp. JA-3-3Ab V4R domain-containing protein YP_474002.1 538610 R 321327 CDS YP_474003.1 86605240 3897437 complement(539316..539795) 1 NC_007775.1 phycobilisome protein 539795 3897437 CYA_0523 Synechococcus sp. JA-3-3Ab phycobilisome protein YP_474003.1 539316 R 321327 CDS YP_474004.1 86605241 3897438 complement(539818..540696) 1 NC_007775.1 identified by match to protein family HMM PF00502; phycobilisome protein 540696 3897438 CYA_0524 Synechococcus sp. JA-3-3Ab phycobilisome protein YP_474004.1 539818 R 321327 CDS YP_474005.1 86605242 3897439 complement(540751..541434) 1 NC_007775.1 identified by match to protein family HMM PF02830; bacteriochlorophyll 4-vinyl reductase 541434 bchJ 3897439 bchJ Synechococcus sp. JA-3-3Ab bacteriochlorophyll 4-vinyl reductase YP_474005.1 540751 R 321327 CDS YP_474006.1 86605243 3897440 complement(541607..542092) 1 NC_007775.1 identified by match to protein family HMM PF00111; iron-sulfur cluster-binding protein 542092 3897440 CYA_0526 Synechococcus sp. JA-3-3Ab iron-sulfur cluster-binding protein YP_474006.1 541607 R 321327 CDS YP_474007.1 86605244 3897441 542537..543100 1 NC_007775.1 identified by match to protein family HMM PF00427; phycobilisome linker polypeptide 543100 3897441 CYA_0528 Synechococcus sp. JA-3-3Ab phycobilisome linker polypeptide YP_474007.1 542537 D 321327 CDS YP_474008.1 86605245 3897403 complement(543064..544068) 1 NC_007775.1 taurine ABC transporter periplasmic substrate-binding protein 544068 3897403 CYA_0527 Synechococcus sp. JA-3-3Ab taurine ABC transporter periplasmic substrate-binding protein YP_474008.1 543064 R 321327 CDS YP_474009.1 86605246 3897404 544262..545764 1 NC_007775.1 identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469; uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase 545764 cobA/hemD 3897404 cobA/hemD Synechococcus sp. JA-3-3Ab uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase YP_474009.1 544262 D 321327 CDS YP_474010.1 86605247 3897405 545801..546625 1 NC_007775.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 546625 menB 3897405 menB Synechococcus sp. JA-3-3Ab naphthoate synthase YP_474010.1 545801 D 321327 CDS YP_474011.1 86605248 3897406 546670..549456 1 NC_007775.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 549456 polA 3897406 polA Synechococcus sp. JA-3-3Ab DNA polymerase I YP_474011.1 546670 D 321327 CDS YP_474012.1 86605249 3897407 549522..549782 1 NC_007775.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181; glutaredoxin 3 549782 grxC 3897407 grxC Synechococcus sp. JA-3-3Ab glutaredoxin 3 YP_474012.1 549522 D 321327 CDS YP_474013.1 86605250 3897408 complement(549834..550130) 1 NC_007775.1 identified by similarity to PIR:S75241; hypothetical protein 550130 3897408 CYA_0533 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474013.1 549834 R 321327 CDS YP_474014.1 86605251 3897409 complement(550279..550806) 1 NC_007775.1 identified by match to protein family HMM PF01209; UbiE/COQ5 family methlytransferase 550806 3897409 CYA_0534 Synechococcus sp. JA-3-3Ab UbiE/COQ5 family methlytransferase YP_474014.1 550279 R 321327 CDS YP_474015.1 86605252 3897410 complement(550816..551700) 1 NC_007775.1 identified by match to protein family HMM PF00491; arginase family protein 551700 3897410 CYA_0535 Synechococcus sp. JA-3-3Ab arginase family protein YP_474015.1 550816 R 321327 CDS YP_474016.1 86605253 3897411 551962..552357 1 NC_007775.1 identified by similarity to SP:P20452; match to protein family HMM PF02531; photosystem I reaction center subunit II 552357 psaD 3897411 psaD Synechococcus sp. JA-3-3Ab photosystem I reaction center subunit II YP_474016.1 551962 D 321327 CDS YP_474017.1 86605254 3897412 complement(552727..553335) 1 NC_007775.1 identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 553335 3897412 CYA_0537 Synechococcus sp. JA-3-3Ab anti-oxidant AhpCTSA family protein YP_474017.1 552727 R 321327 CDS YP_474018.1 86605255 3897413 553397..553501 1 NC_007775.1 hypothetical protein 553501 3897413 CYA_0538 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474018.1 553397 D 321327 CDS YP_474019.1 86605256 3897414 553498..553734 1 NC_007775.1 hypothetical protein 553734 3897414 CYA_0539 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474019.1 553498 D 321327 CDS YP_474020.1 86605257 3897415 complement(553736..553993) 1 NC_007775.1 identified by similarity to PIR:AE2344; hypothetical protein 553993 3897415 CYA_0540 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474020.1 553736 R 321327 CDS YP_474021.1 86605258 3897416 553993..554184 1 NC_007775.1 hypothetical protein 554184 3897416 CYA_0541 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474021.1 553993 D 321327 CDS YP_474022.1 86605259 3897417 554249..555292 1 NC_007775.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 555292 glpX 3897417 glpX Synechococcus sp. JA-3-3Ab fructose 1,6-bisphosphatase II YP_474022.1 554249 D 321327 CDS YP_474023.1 86605260 3897418 555611..556906 1 NC_007775.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 556906 hemA 3897418 hemA Synechococcus sp. JA-3-3Ab glutamyl-tRNA reductase YP_474023.1 555611 D 321327 CDS YP_474024.1 86605261 3897419 557019..557126 1 NC_007775.1 hypothetical protein 557126 3897419 CYA_0544 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474024.1 557019 D 321327 CDS YP_474025.1 86605262 3897420 557310..559127 1 NC_007775.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA 559127 typA 3897420 typA Synechococcus sp. JA-3-3Ab GTP-binding protein TypA YP_474025.1 557310 D 321327 CDS YP_474026.1 86605263 3897421 complement(559138..561246) 1 NC_007775.1 hypothetical protein 561246 3897421 CYA_0546 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474026.1 559138 R 321327 CDS YP_474027.1 86605264 3897422 complement(561284..562600) 1 NC_007775.1 identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; competence/damage-inducible protein CinA 562600 cinA 3897422 cinA Synechococcus sp. JA-3-3Ab competence/damage-inducible protein CinA YP_474027.1 561284 R 321327 CDS YP_474028.1 86605265 3897384 complement(562722..563216) 1 NC_007775.1 identified by match to protein family HMM PF00583; acetyltransferase 563216 3897384 CYA_0548 Synechococcus sp. JA-3-3Ab acetyltransferase YP_474028.1 562722 R 321327 CDS YP_474029.1 86605266 3897385 complement(563304..563780) 1 NC_007775.1 identified by match to protein family HMM PF01797; ISSoc3, orfA transposase 563780 3897385 CYA_0549 Synechococcus sp. JA-3-3Ab ISSoc3, orfA transposase YP_474029.1 563304 R 321327 CDS YP_474030.1 86605267 3897387 complement(565110..565394) 1 NC_007775.1 hypothetical protein 565394 3897387 CYA_0551 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474030.1 565110 R 321327 CDS YP_474031.1 86605268 3897388 565575..566657 1 NC_007775.1 identified by match to protein family HMM PF01656; match to protein family HMM PF01883; CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein 566657 3897388 CYA_0553 Synechococcus sp. JA-3-3Ab CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein YP_474031.1 565575 D 321327 CDS YP_474032.1 86605269 3897389 complement(566654..567022) 1 NC_007775.1 lipoprotein 567022 3897389 CYA_0552 Synechococcus sp. JA-3-3Ab lipoprotein YP_474032.1 566654 R 321327 CDS YP_474033.1 86605270 3897390 complement(567087..569000) 1 NC_007775.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244; OMP85 family membrane protein 569000 3897390 CYA_0554 Synechococcus sp. JA-3-3Ab OMP85 family membrane protein YP_474033.1 567087 R 321327 CDS YP_474034.1 86605271 3897391 complement(569380..569727) 1 NC_007775.1 hypothetical protein 569727 3897391 CYA_0555 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474034.1 569380 R 321327 CDS YP_474035.1 86605272 3897392 570008..570109 1 NC_007775.1 hypothetical protein 570109 3897392 CYA_0557 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474035.1 570008 D 321327 CDS YP_474036.1 86605273 3897393 complement(570096..570899) 1 NC_007775.1 identified by similarity to SP:Q06750; match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine O-acetyltransferase 570899 cysE 3897393 cysE Synechococcus sp. JA-3-3Ab serine O-acetyltransferase YP_474036.1 570096 R 321327 CDS YP_474037.1 86605274 3897394 571083..571424 1 NC_007775.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; glutaredoxin-like protein 571424 3897394 CYA_0558 Synechococcus sp. JA-3-3Ab glutaredoxin-like protein YP_474037.1 571083 D 321327 CDS YP_474038.1 86605275 3897395 571433..571714 1 NC_007775.1 identified by similarity to SP:P15298; match to protein family HMM PF01722; BolA protein 571714 bolA 3897395 bolA Synechococcus sp. JA-3-3Ab BolA protein YP_474038.1 571433 D 321327 CDS YP_474039.1 86605276 3897396 572078..572428 1 NC_007775.1 identified by match to protein family HMM PF04020; hypothetical protein 572428 3897396 CYA_0560 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474039.1 572078 D 321327 CDS YP_474040.1 86605277 3897397 complement(572482..575142) 1 NC_007775.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 575142 topA 3897397 topA Synechococcus sp. JA-3-3Ab DNA topoisomerase I YP_474040.1 572482 R 321327 CDS YP_474041.1 86605278 3897398 575343..575762 1 NC_007775.1 identified by match to protein family HMM PF00903; glyoxalase family protein 575762 3897398 CYA_0562 Synechococcus sp. JA-3-3Ab glyoxalase family protein YP_474041.1 575343 D 321327 CDS YP_474042.1 86605279 3897399 complement(575990..578068) 1 NC_007775.1 identified by match to protein family HMM PF00004; match to protein family HMM PF06144; match to protein family HMM TIGR02397; DNA polymerase III subunits gamma and tau 578068 dnaX 3897399 dnaX Synechococcus sp. JA-3-3Ab DNA polymerase III subunits gamma and tau YP_474042.1 575990 R 321327 CDS YP_474043.1 86605280 3897400 complement(578157..578693) 1 NC_007775.1 hypothetical protein 578693 3897400 CYA_0564 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474043.1 578157 R 321327 CDS YP_474044.1 86605281 3897401 complement(578722..579414) 1 NC_007775.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 579414 coaE 3897401 coaE Synechococcus sp. JA-3-3Ab dephospho-CoA kinase YP_474044.1 578722 R 321327 CDS YP_474045.1 86605282 3897402 complement(579514..581181) 1 NC_007775.1 identified by match to protein family HMM PF00682; match to protein family HMM TIGR00977; alpha-isopropylmalate/homocitrate synthase family transferase 581181 3897402 CYA_0566 Synechococcus sp. JA-3-3Ab alpha-isopropylmalate/homocitrate synthase family transferase YP_474045.1 579514 R 321327 CDS YP_474046.1 86605283 3897364 complement(581171..581542) 1 NC_007775.1 identified by similarity to GB:BAD78868.1; hypothetical protein 581542 3897364 CYA_0567 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474046.1 581171 R 321327 CDS YP_474047.1 86605284 3897365 581831..582655 1 NC_007775.1 identified by match to protein family HMM PF00733; match to protein family HMM PF01171; match to protein family HMM TIGR00268; PP-loop family protein 582655 3897365 CYA_0568 Synechococcus sp. JA-3-3Ab PP-loop family protein YP_474047.1 581831 D 321327 CDS YP_474048.1 86605285 3897366 582703..584529 1 NC_007775.1 hypothetical protein 584529 3897366 CYA_0569 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474048.1 582703 D 321327 CDS YP_474049.1 86605286 3897367 584810..585091 1 NC_007775.1 identified by similarity to GB:BAC09020.1; hypothetical protein 585091 3897367 CYA_0570 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474049.1 584810 D 321327 CDS YP_474050.1 86605287 3897368 complement(585116..585490) 1 NC_007775.1 lipoprotein 585490 3897368 CYA_0571 Synechococcus sp. JA-3-3Ab lipoprotein YP_474050.1 585116 R 321327 CDS YP_474051.1 86605288 3897369 complement(585522..586202) 1 NC_007775.1 hypothetical protein 586202 3897369 CYA_0572 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474051.1 585522 R 321327 CDS YP_474052.1 86605289 3897370 complement(586289..586831) 1 NC_007775.1 hypothetical protein 586831 3897370 CYA_0573 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474052.1 586289 R 321327 CDS YP_474053.1 86605290 3897371 587313..587771 1 NC_007775.1 Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 587771 3897371 CYA_0574 Synechococcus sp. JA-3-3Ab S-adenosylmethionine decarboxylase YP_474053.1 587313 D 321327 CDS YP_474054.1 86605291 3897372 587800..588738 1 NC_007775.1 identified by similarity to SP:P09158; match to protein family HMM PF01564; match to protein family HMM TIGR00417; spermidine synthase 588738 speE 3897372 speE Synechococcus sp. JA-3-3Ab spermidine synthase YP_474054.1 587800 D 321327 CDS YP_474055.1 86605292 3897373 588838..589989 1 NC_007775.1 identified by similarity to SP:O48917; match to protein family HMM PF01370; UDP-sulfoquinovose synthase 589989 3897373 CYA_0577 Synechococcus sp. JA-3-3Ab UDP-sulfoquinovose synthase YP_474055.1 588838 D 321327 CDS YP_474056.1 86605293 3897374 complement(589986..590897) 1 NC_007775.1 identified by match to protein family HMM PF00850; histone deacetylase family protein 590897 3897374 CYA_0576 Synechococcus sp. JA-3-3Ab histone deacetylase family protein YP_474056.1 589986 R 321327 CDS YP_474057.1 86605294 3897375 complement(590947..591267) 1 NC_007775.1 hypothetical protein 591267 3897375 CYA_0578 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474057.1 590947 R 321327 CDS YP_474058.1 86605295 3897376 complement(591438..591608) 1 NC_007775.1 hypothetical protein 591608 3897376 CYA_0579 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474058.1 591438 R 321327 CDS YP_474059.1 86605296 3897377 complement(591848..592186) 1 NC_007775.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; iojap protein 592186 3897377 CYA_0580 Synechococcus sp. JA-3-3Ab iojap protein YP_474059.1 591848 R 321327 CDS YP_474060.1 86605297 3897378 complement(592232..592873) 1 NC_007775.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488; HD domain-containing protein 592873 3897378 CYA_0581 Synechococcus sp. JA-3-3Ab HD domain-containing protein YP_474060.1 592232 R 321327 CDS YP_474061.1 86605298 3897379 complement(592866..594677) 1 NC_007775.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 594677 lepA 3897379 lepA Synechococcus sp. JA-3-3Ab GTP-binding protein LepA YP_474061.1 592866 R 321327 CDS YP_474062.1 86605299 3897380 complement(594944..595468) 1 NC_007775.1 identified by similarity to GB:BAC08349.1; match to protein family HMM PF01936; hypothetical protein 595468 3897380 CYA_0583 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474062.1 594944 R 321327 CDS YP_474063.1 86605300 3897381 complement(595616..596602) 1 NC_007775.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 596602 glyQ 3897381 glyQ Synechococcus sp. JA-3-3Ab glycyl-tRNA synthetase subunit alpha YP_474063.1 595616 R 321327 CDS YP_474064.1 86605301 3897382 complement(596648..597418) 1 NC_007775.1 T1 family peptidase 597418 3897382 CYA_0585 Synechococcus sp. JA-3-3Ab T1 family peptidase YP_474064.1 596648 R 321327 CDS YP_474065.1 86605302 3897383 complement(597478..598887) 1 NC_007775.1 identified by match to protein family HMM PF01926; GTP-binding domain-containing protein 598887 3897383 CYA_0586 Synechococcus sp. JA-3-3Ab GTP-binding domain-containing protein YP_474065.1 597478 R 321327 CDS YP_474066.1 86605303 3897345 599119..599403 1 NC_007775.1 identified by similarity to GB:BAC09322.1; match to protein family HMM PF04248; hypothetical protein 599403 3897345 CYA_0587 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474066.1 599119 D 321327 CDS YP_474067.1 86605304 3897346 599457..600041 1 NC_007775.1 identified by match to protein family HMM PF07676; Xaa-Pro aminopeptidase-like protein 600041 3897346 CYA_0588 Synechococcus sp. JA-3-3Ab Xaa-Pro aminopeptidase-like protein YP_474067.1 599457 D 321327 CDS YP_474068.1 86605305 3897347 600076..601260 1 NC_007775.1 catalyzes the formation of N-succinyl-2-L-amino-6-oxoheptanedioate and L-glutamate from N-succinyl-L-2,6-diaminoheptanedioate and 2-oxoglutarate; succinyldiaminopimelate transaminase 601260 3897347 CYA_0589 Synechococcus sp. JA-3-3Ab succinyldiaminopimelate transaminase YP_474068.1 600076 D 321327 CDS YP_474069.1 86605306 3897348 601421..602164 1 NC_007775.1 hypothetical protein 602164 3897348 CYA_0590 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474069.1 601421 D 321327 CDS YP_474070.1 86605307 3897349 602408..603721 1 NC_007775.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 603721 hisD 3897349 hisD Synechococcus sp. JA-3-3Ab histidinol dehydrogenase YP_474070.1 602408 D 321327 CDS YP_474071.1 86605308 3897350 603885..604595 1 NC_007775.1 hypothetical protein 604595 3897350 CYA_0592 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474071.1 603885 D 321327 CDS YP_474072.1 86605309 3897351 604692..604997 1 NC_007775.1 identified by similarity to GB:BAC89079.1; hypothetical protein 604997 3897351 CYA_0593 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474072.1 604692 D 321327 CDS YP_474073.1 86605310 3897352 605022..606212 1 NC_007775.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; hypothetical protein 606212 3897352 CYA_0594 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474073.1 605022 D 321327 CDS YP_474074.1 86605311 3897353 606572..607189 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 607189 3897353 CYA_0595 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_474074.1 606572 D 321327 CDS YP_474075.1 86605312 3897354 607044..608261 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 608261 3897354 CYA_0596 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_474075.1 607044 D 321327 CDS YP_474076.1 86605313 3897355 608382..609281 1 NC_007775.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls the expression of genes coding cell surface proteins involved in motility and growth on nitrogen; RNA polymerase sigma factor SigF 609281 3897355 CYA_0597 Synechococcus sp. JA-3-3Ab RNA polymerase sigma factor SigF YP_474076.1 608382 D 321327 CDS YP_474077.1 86605314 3897356 complement(609477..610247) 1 NC_007775.1 hypothetical protein 610247 3897356 CYA_0598 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474077.1 609477 R 321327 CDS YP_474079.1 86605316 3897358 610837..611103 1 NC_007775.1 hypothetical protein 611103 3897358 CYA_0600 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474079.1 610837 D 321327 CDS YP_474082.1 86605319 3897361 611850..613559 1 NC_007775.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 613559 ureC 3897361 ureC Synechococcus sp. JA-3-3Ab urease subunit alpha YP_474082.1 611850 D 321327 CDS YP_474083.1 86605320 3897362 613567..614016 1 NC_007775.1 involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 614016 ureE 3897362 ureE Synechococcus sp. JA-3-3Ab urease accessory protein UreE YP_474083.1 613567 D 321327 CDS YP_474084.1 86605321 3897363 614023..614676 1 NC_007775.1 identified by similarity to SP:Q07402; match to protein family HMM PF01730; urease accessory protein UreF 614676 ureF 3897363 ureF Synechococcus sp. JA-3-3Ab urease accessory protein UreF YP_474084.1 614023 D 321327 CDS YP_474085.1 86605322 3897325 614688..615296 1 NC_007775.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101; urease accessory protein UreG 615296 ureG 3897325 ureG Synechococcus sp. JA-3-3Ab urease accessory protein UreG YP_474085.1 614688 D 321327 CDS YP_474086.1 86605323 3897326 615313..616104 1 NC_007775.1 urease accessory protein UreD 616104 3897326 CYA_0607 Synechococcus sp. JA-3-3Ab urease accessory protein UreD YP_474086.1 615313 D 321327 CDS YP_474087.1 86605324 3897328 617290..617655 1 NC_007775.1 identified by similarity to PIR:AH2183; hypothetical protein 617655 3897328 CYA_0609 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474087.1 617290 D 321327 CDS YP_474088.1 86605325 3897329 618095..619252 1 NC_007775.1 SCP family protein 619252 3897329 CYA_0610 Synechococcus sp. JA-3-3Ab SCP family protein YP_474088.1 618095 D 321327 CDS YP_474090.1 86605327 3897331 619713..621260 1 NC_007775.1 ferredoxin-dependent assimilatory nitrite reductase; ferredoxin-nitrite reductase 621260 nirA 3897331 nirA Synechococcus sp. JA-3-3Ab ferredoxin-nitrite reductase YP_474090.1 619713 D 321327 CDS YP_474091.1 86605328 3897332 621322..622644 1 NC_007775.1 identified by similarity to SP:P38043; match to protein family HMM TIGR01409; nitrate ABC transporter nitrate-binding protein NrtA 622644 nrtA 3897332 nrtA Synechococcus sp. JA-3-3Ab nitrate ABC transporter nitrate-binding protein NrtA YP_474091.1 621322 D 321327 CDS YP_474092.1 86605329 3897333 622778..623737 1 NC_007775.1 identified by similarity to SP:P38044; match to protein family HMM PF00528; match to protein family HMM TIGR01183; nitrate ABC transporter permease NrtB 623737 ntrB-1 3897333 ntrB-1 Synechococcus sp. JA-3-3Ab nitrate ABC transporter permease NrtB YP_474092.1 622778 D 321327 CDS YP_474093.1 86605330 3897334 623810..625801 1 NC_007775.1 identified by similarity to SP:P73450; match to protein family HMM PF00005; match to protein family HMM TIGR01184; nitrate ABC transporter ATP-binding protein NtrC 625801 ntrC-1 3897334 ntrC-1 Synechococcus sp. JA-3-3Ab nitrate ABC transporter ATP-binding protein NtrC YP_474093.1 623810 D 321327 CDS YP_474094.1 86605331 3897335 625840..626682 1 NC_007775.1 identified by similarity to SP:P38046; match to protein family HMM PF00005; match to protein family HMM TIGR01184; nitrate ABC transporter ATP-binding protein NtrD 626682 ntrD-1 3897335 ntrD-1 Synechococcus sp. JA-3-3Ab nitrate ABC transporter ATP-binding protein NtrD YP_474094.1 625840 D 321327 CDS YP_474095.1 86605332 3897336 626716..627132 1 NC_007775.1 hypothetical protein 627132 3897336 CYA_0618 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474095.1 626716 D 321327 CDS YP_474096.1 86605333 3897337 complement(627118..627213) 1 NC_007775.1 hypothetical protein 627213 3897337 CYA_0617 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474096.1 627118 R 321327 CDS YP_474097.1 86605334 3897338 627358..629493 1 NC_007775.1 identified by similarity to SP:P73448; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; nitrate reductase 629493 narB 3897338 narB Synechococcus sp. JA-3-3Ab nitrate reductase YP_474097.1 627358 D 321327 CDS YP_474098.1 86605335 3897339 629518..630009 1 NC_007775.1 identified by similarity to GB:BAD78799.1; match to protein family HMM TIGR02664; hypothetical protein 630009 3897339 CYA_0621 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474098.1 629518 D 321327 CDS YP_474099.1 86605336 3897340 complement(629981..631174) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase 631174 3897340 CYA_0620 Synechococcus sp. JA-3-3Ab ISSoc1, transposase YP_474099.1 629981 R 321327 CDS YP_474100.1 86605337 3897341 complement(631635..632930) 1 NC_007775.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 632930 purD 3897341 purD Synechococcus sp. JA-3-3Ab phosphoribosylamine--glycine ligase YP_474100.1 631635 R 321327 CDS YP_474101.1 86605338 3897342 complement(633056..634186) 1 NC_007775.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 634186 3897342 CYA_0623 Synechococcus sp. JA-3-3Ab glycosyl transferase family protein YP_474101.1 633056 R 321327 CDS YP_474102.1 86605339 3897343 complement(634313..635602) 1 NC_007775.1 identified by match to protein family HMM PF01966; HD domain-containing protein 635602 3897343 CYA_0624 Synechococcus sp. JA-3-3Ab HD domain-containing protein YP_474102.1 634313 R 321327 CDS YP_474103.1 86605340 3897344 635727..636782 1 NC_007775.1 identified by match to protein family HMM PF00657; GDSL-like lipase/acylhydrolase domain-containing protein 636782 3897344 CYA_0625 Synechococcus sp. JA-3-3Ab GDSL-like lipase/acylhydrolase domain-containing protein YP_474103.1 635727 D 321327 CDS YP_474104.1 86605341 3897301 complement(636800..638650) 1 NC_007775.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; metallo-beta-lactamase family protein 638650 3897301 CYA_0626 Synechococcus sp. JA-3-3Ab metallo-beta-lactamase family protein YP_474104.1 636800 R 321327 CDS YP_474105.1 86605342 3897302 complement(638904..639824) 1 NC_007775.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 639824 dapA 3897302 dapA Synechococcus sp. JA-3-3Ab dihydrodipicolinate synthase YP_474105.1 638904 R 321327 CDS YP_474106.1 86605343 3897303 640132..640758 1 NC_007775.1 identified by match to protein family HMM PF00881; nitroreductase family protein 640758 3897303 CYA_0628 Synechococcus sp. JA-3-3Ab nitroreductase family protein YP_474106.1 640132 D 321327 CDS YP_474107.1 86605344 3897305 complement(641898..642929) 1 NC_007775.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 642929 trpD 3897305 trpD Synechococcus sp. JA-3-3Ab anthranilate phosphoribosyltransferase YP_474107.1 641898 R 321327 CDS YP_474108.1 86605345 3897306 complement(642959..643759) 1 NC_007775.1 hypothetical protein 643759 3897306 CYA_0631 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474108.1 642959 R 321327 CDS YP_474109.1 86605346 3897307 complement(643786..644448) 1 NC_007775.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 644448 purN 3897307 purN Synechococcus sp. JA-3-3Ab phosphoribosylglycinamide formyltransferase YP_474109.1 643786 R 321327 CDS YP_474110.1 86605347 3897308 645187..645657 1 NC_007775.1 identified by similarity to PIR:AB2412; hypothetical protein 645657 3897308 CYA_0633 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474110.1 645187 D 321327 CDS YP_474111.1 86605348 3897309 645674..646252 1 NC_007775.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 646252 aat 3897309 aat Synechococcus sp. JA-3-3Ab leucyl/phenylalanyl-tRNA--protein transferase YP_474111.1 645674 D 321327 CDS YP_474112.1 86605349 3897310 646344..646526 1 NC_007775.1 identified by similarity to GB:BAC09136.1; hypothetical protein 646526 3897310 CYA_0635 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474112.1 646344 D 321327 CDS YP_474113.1 86605350 3897311 646673..647806 1 NC_007775.1 interacts with the circadian clock regulator KaiC to maintain circadian rhythms; adaptive-response sensory kinase 647806 sasA 3897311 sasA Synechococcus sp. JA-3-3Ab adaptive-response sensory kinase YP_474113.1 646673 D 321327 CDS YP_474114.1 86605351 3897312 complement(647772..648272) 1 NC_007775.1 identified by match to protein family HMM PF02469; fasciclin domain-containing protein 648272 3897312 CYA_0636 Synechococcus sp. JA-3-3Ab fasciclin domain-containing protein YP_474114.1 647772 R 321327 CDS YP_474115.1 86605352 3897313 complement(648407..649717) 1 NC_007775.1 identified by match to protein family HMM TIGR01964; CO2 hydration protein 649717 3897313 CYA_0638 Synechococcus sp. JA-3-3Ab CO2 hydration protein YP_474115.1 648407 R 321327 CDS YP_474116.1 86605353 3897314 complement(649763..651292) 1 NC_007775.1 identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH-ubiquinone/plastoquinone oxidoreductase subunit 4 family protein 651292 3897314 CYA_0639 Synechococcus sp. JA-3-3Ab NADH-ubiquinone/plastoquinone oxidoreductase subunit 4 family protein YP_474116.1 649763 R 321327 CDS YP_474117.1 86605354 3897315 complement(651333..653168) 1 NC_007775.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NAD(P)H-quinone oxidoreductase subunit F 653168 3897315 CYA_0640 Synechococcus sp. JA-3-3Ab NAD(P)H-quinone oxidoreductase subunit F YP_474117.1 651333 R 321327 CDS YP_474118.1 86605355 3897316 complement(653300..653461) 1 NC_007775.1 hypothetical protein 653461 3897316 CYA_0641 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474118.1 653300 R 321327 CDS YP_474119.1 86605356 3897317 complement(653521..653628) 1 NC_007775.1 identified by similarity to SP:P72701; match to protein family HMM PF05151; photosystem II reaction center protein M 653628 psbM 3897317 psbM Synechococcus sp. JA-3-3Ab photosystem II reaction center protein M YP_474119.1 653521 R 321327 CDS YP_474120.1 86605357 3897318 complement(653709..654005) 1 NC_007775.1 identified by match to protein family HMM PF00111; iron-sulfur cluster-binding protein 654005 3897318 CYA_0643 Synechococcus sp. JA-3-3Ab iron-sulfur cluster-binding protein YP_474120.1 653709 R 321327 CDS YP_474121.1 86605358 3897319 654368..655900 1 NC_007775.1 identified by similarity to SP:P20093; match to protein family HMM PF00421; photosystem II P680 chlorophyll A apoprotein 655900 psbB 3897319 psbB Synechococcus sp. JA-3-3Ab photosystem II P680 chlorophyll A apoprotein YP_474121.1 654368 D 321327 CDS YP_474122.1 86605359 3897282 656014..656112 1 NC_007775.1 identified by match to protein family HMM PF01405; photosystem II reaction center protein PsbT 656112 psbT 3897282 psbT Synechococcus sp. JA-3-3Ab photosystem II reaction center protein PsbT YP_474122.1 656014 D 321327 CDS YP_474123.1 86605360 3897283 656510..656917 1 NC_007775.1 identified by similarity to PRF:2209375A; match to protein family HMM PF00072; response regulator 656917 3897283 CYA_0647 Synechococcus sp. JA-3-3Ab response regulator YP_474123.1 656510 D 321327 CDS YP_474124.1 86605361 3897284 complement(656914..657591) 1 NC_007775.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 657591 purQ 3897284 purQ Synechococcus sp. JA-3-3Ab phosphoribosylformylglycinamidine synthase I YP_474124.1 656914 R 321327 CDS YP_474125.1 86605362 3897285 complement(657644..657901) 1 NC_007775.1 identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase, PurS protein 657901 purS 3897285 purS Synechococcus sp. JA-3-3Ab phosphoribosylformylglycinamidine synthase, PurS protein YP_474125.1 657644 R 321327 CDS YP_474126.1 86605363 3897286 657961..658734 1 NC_007775.1 identified by similarity to GB:AAC36156.1; pilus biogenesis protein 658734 3897286 CYA_0649 Synechococcus sp. JA-3-3Ab pilus biogenesis protein YP_474126.1 657961 D 321327 CDS YP_474127.1 86605364 3897287 658781..659509 1 NC_007775.1 identified by match to protein family HMM PF04029; match to protein family HMM TIGR00298; 2-phosphosulfolactate phosphatase 659509 comB 3897287 comB Synechococcus sp. JA-3-3Ab 2-phosphosulfolactate phosphatase YP_474127.1 658781 D 321327 CDS YP_474128.1 86605365 3897288 complement(659506..659844) 1 NC_007775.1 hypothetical protein 659844 3897288 CYA_0650 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474128.1 659506 R 321327 CDS YP_474129.1 86605366 3897289 659997..661103 1 NC_007775.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 661103 argC 3897289 argC Synechococcus sp. JA-3-3Ab N-acetyl-gamma-glutamyl-phosphate reductase YP_474129.1 659997 D 321327 CDS YP_474130.1 86605367 3897290 661037..662572 1 NC_007775.1 hypothetical protein 662572 3897290 CYA_0653 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474130.1 661037 D 321327 CDS YP_474131.1 86605368 3897291 662803..663885 1 NC_007775.1 identified by similarity to SP:Q94FY7; tocopherol cyclase 663885 3897291 CYA_0654 Synechococcus sp. JA-3-3Ab tocopherol cyclase YP_474131.1 662803 D 321327 CDS YP_474132.1 86605369 3897293 664229..666703 1 NC_007775.1 identified by similarity to SP:P37571; match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; Clp protease, ATP-binding subunit ClpC 666703 clpC 3897293 clpC Synechococcus sp. JA-3-3Ab Clp protease, ATP-binding subunit ClpC YP_474132.1 664229 D 321327 CDS YP_474133.1 86605370 3897294 666852..667484 1 NC_007775.1 ClpR variant present in an operon with ClpP3 in Synechococcus PCC7942; ClpR is missing the catalytic triad Ser-His-Asp characteristic of serine-type proteases; the exact function of ClpR and ClpP3 is unknown however they appear to be necessary for cell viability; hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease-like protein 667484 3897294 CYA_0657 Synechococcus sp. JA-3-3Ab ATP-dependent Clp protease-like protein YP_474133.1 666852 D 321327 CDS YP_474134.1 86605371 3897295 667502..668083 1 NC_007775.1 identified by similarity to PIR:AD2411; match to protein family HMM PF05685; hypothetical protein 668083 3897295 CYA_0658 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474134.1 667502 D 321327 CDS YP_474135.1 86605372 3897296 668111..668722 1 NC_007775.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 668722 clpP 3897296 clpP Synechococcus sp. JA-3-3Ab ATP-dependent Clp protease proteolytic subunit YP_474135.1 668111 D 321327 CDS YP_474136.1 86605373 3897297 668842..669264 1 NC_007775.1 hypothetical protein 669264 3897297 CYA_0660 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474136.1 668842 D 321327 CDS YP_474137.1 86605374 3897298 complement(669298..669954) 1 NC_007775.1 identified by match to protein family HMM PF06206; hypothetical protein 669954 3897298 CYA_0661 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474137.1 669298 R 321327 CDS YP_474138.1 86605375 3897299 670060..671454 1 NC_007775.1 identified by similarity to SP:P16468; match to protein family HMM PF00390; match to protein family HMM PF01842; match to protein family HMM PF03949; malate dehydrogenase 671454 3897299 CYA_0662 Synechococcus sp. JA-3-3Ab malate dehydrogenase YP_474138.1 670060 D 321327 CDS YP_474139.1 86605376 3897300 671834..672505 1 NC_007775.1 identified by match to protein family HMM PF07758; hypothetical protein 672505 3897300 CYA_0664 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474139.1 671834 D 321327 CDS YP_474140.1 86605377 3897244 complement(672502..674634) 1 NC_007775.1 identified by match to protein family HMM PF00656; match to protein family HMM TIGR01409; ICE-like protease 674634 3897244 CYA_0663 Synechococcus sp. JA-3-3Ab ICE-like protease YP_474140.1 672502 R 321327 CDS YP_474141.1 86605378 3897245 complement(675283..676173) 1 NC_007775.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease family protein 676173 3897245 CYA_0665 Synechococcus sp. JA-3-3Ab CAAX amino terminal protease family protein YP_474141.1 675283 R 321327 CDS YP_474142.1 86605379 3897246 complement(676304..677014) 1 NC_007775.1 identified by similarity to GB:BAC90862.1; hypothetical protein 677014 3897246 CYA_0666 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474142.1 676304 R 321327 CDS YP_474143.1 86605380 3897247 complement(677064..678011) 1 NC_007775.1 identified by match to protein family HMM PF00483; nucleotidyl transferase family protein 678011 3897247 CYA_0667 Synechococcus sp. JA-3-3Ab nucleotidyl transferase family protein YP_474143.1 677064 R 321327 CDS YP_474144.1 86605381 3897248 complement(678143..679594) 1 NC_007775.1 identified by similarity to SP:Q9FV46; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02732; carotene 7,8-desaturase 679594 zds 3897248 zds Synechococcus sp. JA-3-3Ab carotene 7,8-desaturase YP_474144.1 678143 R 321327 CDS YP_474145.1 86605382 3897249 complement(679605..679709) 1 NC_007775.1 hypothetical protein 679709 3897249 CYA_0669 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474145.1 679605 R 321327 CDS YP_474146.1 86605383 3897251 complement(679854..680588) 1 NC_007775.1 identified by match to protein family HMM PF02557; D-alanyl-D-alanine carboxypeptidase 680588 3897251 CYA_0671 Synechococcus sp. JA-3-3Ab D-alanyl-D-alanine carboxypeptidase YP_474146.1 679854 R 321327 CDS YP_474147.1 86605384 3897252 complement(680628..681065) 1 NC_007775.1 identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 681065 3897252 CYA_0672 Synechococcus sp. JA-3-3Ab anti-oxidant AhpCTSA family protein YP_474147.1 680628 R 321327 CDS YP_474148.1 86605385 3897253 complement(681136..681759) 1 NC_007775.1 identified by match to protein family HMM PF01966; HD domain-containing protein 681759 3897253 CYA_0673 Synechococcus sp. JA-3-3Ab HD domain-containing protein YP_474148.1 681136 R 321327 CDS YP_474150.1 86605387 3897255 683434..684870 1 NC_007775.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 684870 mgtE-1 3897255 mgtE-1 Synechococcus sp. JA-3-3Ab magnesium transporter YP_474150.1 683434 D 321327 CDS YP_474151.1 86605388 3897256 684900..685172 1 NC_007775.1 identified by similarity to PIR:AG2305; hypothetical protein 685172 3897256 CYA_0676 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474151.1 684900 D 321327 CDS YP_474152.1 86605389 3897257 685207..685908 1 NC_007775.1 identified by match to protein family HMM PF02308; mgtC family protein 685908 3897257 CYA_0677 Synechococcus sp. JA-3-3Ab mgtC family protein YP_474152.1 685207 D 321327 CDS YP_474153.1 86605390 3897258 complement(686139..686762) 1 NC_007775.1 identified by match to protein family HMM PF01169; hypothetical protein 686762 3897258 CYA_0678 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474153.1 686139 R 321327 CDS YP_474154.1 86605391 3897259 687174..687296 1 NC_007775.1 identified by similarity to GB:BAC91764.1; hypothetical protein 687296 3897259 CYA_0679 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474154.1 687174 D 321327 CDS YP_474155.1 86605392 3897260 687319..687720 1 NC_007775.1 identified by similarity to SP:Q55761; match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 687720 3897260 CYA_0680 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474155.1 687319 D 321327 CDS YP_474156.1 86605393 3897261 688002..688256 1 NC_007775.1 hypothetical protein 688256 3897261 CYA_0682 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474156.1 688002 D 321327 CDS YP_474157.1 86605394 3897224 complement(688253..688795) 1 NC_007775.1 identified by similarity to PIR:AI2373; match to protein family HMM PF05991; hypothetical protein 688795 3897224 CYA_0681 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474157.1 688253 R 321327 CDS YP_474158.1 86605395 3897225 complement(688930..689640) 1 NC_007775.1 identified by similarity to GB:BAC90862.1; hypothetical protein 689640 3897225 CYA_0683 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474158.1 688930 R 321327 CDS YP_474159.1 86605396 3897226 complement(689690..690649) 1 NC_007775.1 identified by match to protein family HMM PF00483; nucleotidyl transferase family protein 690649 3897226 CYA_0684 Synechococcus sp. JA-3-3Ab nucleotidyl transferase family protein YP_474159.1 689690 R 321327 CDS YP_474160.1 86605397 3897227 691106..691969 1 NC_007775.1 identified by similarity to SP:P39174; match to protein family HMM PF00497; cystine ABC transporter cystine-binding protein 691969 3897227 CYA_0685 Synechococcus sp. JA-3-3Ab cystine ABC transporter cystine-binding protein YP_474160.1 691106 D 321327 CDS YP_474161.1 86605398 3897228 692083..692787 1 NC_007775.1 identified by similarity to SP:P42200; match to protein family HMM PF00528; match to protein family HMM TIGR01726; cystine ABC transporter permease 692787 3897228 CYA_0686 Synechococcus sp. JA-3-3Ab cystine ABC transporter permease YP_474161.1 692083 D 321327 CDS YP_474162.1 86605399 3897229 693323..694534 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase 694534 3897229 CYA_0687 Synechococcus sp. JA-3-3Ab ISSoc1, transposase YP_474162.1 693323 D 321327 CDS YP_474163.1 86605400 3897230 694687..696402 1 NC_007775.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 696402 sdhA 3897230 sdhA Synechococcus sp. JA-3-3Ab succinate dehydrogenase flavoprotein subunit YP_474163.1 694687 D 321327 CDS YP_474164.1 86605401 3897231 696542..697939 1 NC_007775.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 697939 3897231 CYA_0689 Synechococcus sp. JA-3-3Ab beta alanine--pyruvate transaminase YP_474164.1 696542 D 321327 CDS YP_474165.1 86605402 3897232 complement(698056..699204) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase 699204 3897232 CYA_0690 Synechococcus sp. JA-3-3Ab ISSoc1, transposase YP_474165.1 698056 R 321327 CDS YP_474166.1 86605403 3897233 complement(699490..699639) 1 NC_007775.1 hypothetical protein 699639 3897233 CYA_0691 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474166.1 699490 R 321327 CDS YP_474167.1 86605404 3897234 699774..701018 1 NC_007775.1 identified by match to protein family HMM PF01926; GTP-binding domain-containing protein 701018 3897234 CYA_0693 Synechococcus sp. JA-3-3Ab GTP-binding domain-containing protein YP_474167.1 699774 D 321327 CDS YP_474168.1 86605405 3897235 complement(701015..701869) 1 NC_007775.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 701869 lipA-1 3897235 lipA-1 Synechococcus sp. JA-3-3Ab lipoyl synthase YP_474168.1 701015 R 321327 CDS YP_474169.1 86605406 3897236 complement(702091..702585) 1 NC_007775.1 hypothetical protein 702585 3897236 CYA_0694 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474169.1 702091 R 321327 CDS YP_474170.1 86605407 3897237 complement(703051..703287) 1 NC_007775.1 identified by similarity to PIR:AF2125; hypothetical protein 703287 3897237 CYA_0695 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474170.1 703051 R 321327 CDS YP_474171.1 86605408 3897238 703721..704017 1 NC_007775.1 identified by similarity to GB:BAC91322.1; hypothetical protein 704017 3897238 CYA_0696 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474171.1 703721 D 321327 CDS YP_474172.1 86605409 3897239 703998..704966 1 NC_007775.1 identified by match to protein family HMM PF03819; match to protein family HMM TIGR00444; MazG family protein 704966 3897239 CYA_0697 Synechococcus sp. JA-3-3Ab MazG family protein YP_474172.1 703998 D 321327 CDS YP_474173.1 86605410 3897240 705228..705359 1 NC_007775.1 hypothetical protein 705359 3897240 CYA_0698 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474173.1 705228 D 321327 CDS YP_474174.1 86605411 3897241 705467..706513 1 NC_007775.1 identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase 706513 3897241 CYA_0699 Synechococcus sp. JA-3-3Ab 2OG-Fe(II) oxygenase YP_474174.1 705467 D 321327 CDS YP_474175.1 86605412 3897242 706635..707576 1 NC_007775.1 identified by match to protein family HMM PF01841; protease 707576 3897242 CYA_0700 Synechococcus sp. JA-3-3Ab protease YP_474175.1 706635 D 321327 CDS YP_474176.1 86605413 3897243 707669..708175 1 NC_007775.1 hypothetical protein 708175 3897243 CYA_0701 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474176.1 707669 D 321327 CDS YP_474177.1 86605414 3897205 complement(708185..710911) 1 NC_007775.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF01743; match to protein family HMM PF02272; polyA polymerase family protein 710911 3897205 CYA_0702 Synechococcus sp. JA-3-3Ab polyA polymerase family protein YP_474177.1 708185 R 321327 CDS YP_474178.1 86605415 3897206 complement(711147..711695) 1 NC_007775.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 711695 frr 3897206 frr Synechococcus sp. JA-3-3Ab ribosome recycling factor YP_474178.1 711147 R 321327 CDS YP_474179.1 86605416 3897207 711934..712473 1 NC_007775.1 hypothetical protein 712473 3897207 CYA_0705 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474179.1 711934 D 321327 CDS YP_474180.1 86605417 3897208 complement(712445..713638) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase 713638 3897208 CYA_0704 Synechococcus sp. JA-3-3Ab ISSoc1, transposase YP_474180.1 712445 R 321327 CDS YP_474181.1 86605418 3897209 complement(713715..714350) 1 NC_007775.1 identified by match to protein family HMM PF01169; hypothetical protein 714350 3897209 CYA_0706 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474181.1 713715 R 321327 CDS YP_474182.1 86605419 3897210 714927..715322 1 NC_007775.1 identified by similarity to SP:Q8DI54; match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 715322 3897210 CYA_0708 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474182.1 714927 D 321327 CDS YP_474183.1 86605420 3897211 complement(715289..715768) 1 NC_007775.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 715768 3897211 CYA_0707 Synechococcus sp. JA-3-3Ab Holliday junction resolvase-like protein YP_474183.1 715289 R 321327 CDS YP_474184.1 86605421 3897212 715879..717159 1 NC_007775.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 717159 ahcY 3897212 ahcY Synechococcus sp. JA-3-3Ab S-adenosyl-L-homocysteine hydrolase YP_474184.1 715879 D 321327 CDS YP_474185.1 86605422 3897213 complement(717300..718511) 1 NC_007775.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 718511 argG 3897213 argG Synechococcus sp. JA-3-3Ab argininosuccinate synthase YP_474185.1 717300 R 321327 CDS YP_474186.1 86605423 3897214 complement(718783..718953) 1 NC_007775.1 hypothetical protein 718953 3897214 CYA_0711 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474186.1 718783 R 321327 CDS YP_474187.1 86605424 3897215 719078..719575 1 NC_007775.1 identified by similarity to PIR:AF2149; hypothetical protein 719575 3897215 CYA_0712 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474187.1 719078 D 321327 CDS YP_474188.1 86605425 3897216 719654..720526 1 NC_007775.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 720526 lipA-2 3897216 lipA-2 Synechococcus sp. JA-3-3Ab lipoyl synthase YP_474188.1 719654 D 321327 CDS YP_474189.1 86605426 3897217 complement(720523..721737) 1 NC_007775.1 identified by match to protein family HMM PF01926; GTP-binding domain-containing protein 721737 3897217 CYA_0713 Synechococcus sp. JA-3-3Ab GTP-binding domain-containing protein YP_474189.1 720523 R 321327 CDS YP_474190.1 86605427 3897218 721730..721882 1 NC_007775.1 hypothetical protein 721882 3897218 CYA_0715 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474190.1 721730 D 321327 CDS YP_474191.1 86605428 3897219 721907..722056 1 NC_007775.1 hypothetical protein 722056 3897219 CYA_0716 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474191.1 721907 D 321327 CDS YP_474192.1 86605429 3897220 722156..722287 1 NC_007775.1 hypothetical protein 722287 3897220 CYA_0717 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474192.1 722156 D 321327 CDS YP_474193.1 86605430 3897221 722265..722768 1 NC_007775.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 722768 aroQ 3897221 aroQ Synechococcus sp. JA-3-3Ab 3-dehydroquinate dehydratase YP_474193.1 722265 D 321327 CDS YP_474194.1 86605431 3897222 complement(723012..723548) 1 NC_007775.1 identified by match to protein family HMM PF00085; thioredoxin 723548 3897222 CYA_0719 Synechococcus sp. JA-3-3Ab thioredoxin YP_474194.1 723012 R 321327 CDS YP_474195.1 86605432 3897223 723925..727215 1 NC_007775.1 identified by similarity to SP:P13458; SbcC family exonuclease 727215 3897223 CYA_0721 Synechococcus sp. JA-3-3Ab SbcC family exonuclease YP_474195.1 723925 D 321327 CDS YP_474196.1 86605433 3897193 complement(727212..727643) 1 NC_007775.1 hypothetical protein 727643 3897193 CYA_0720 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474196.1 727212 R 321327 CDS YP_474197.1 86605434 3897194 complement(727936..728202) 1 NC_007775.1 identified by similarity to GB:BAC09253.1; hypothetical protein 728202 3897194 CYA_0722 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474197.1 727936 R 321327 CDS YP_474198.1 86605435 3897195 complement(728199..728519) 1 NC_007775.1 hypothetical protein 728519 3897195 CYA_0723 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474198.1 728199 R 321327 CDS YP_474199.1 86605436 3897196 complement(728569..730068) 1 NC_007775.1 CobN/magnesium chelatase domain-containing protein 730068 3897196 CYA_0724 Synechococcus sp. JA-3-3Ab CobN/magnesium chelatase domain-containing protein YP_474199.1 728569 R 321327 CDS YP_474200.1 86605437 3897197 complement(730086..731264) 1 NC_007775.1 maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase/EF-hand domain-containing protein 731264 tal 3897197 tal Synechococcus sp. JA-3-3Ab transaldolase/EF-hand domain-containing protein YP_474200.1 730086 R 321327 CDS YP_474201.1 86605438 3897198 complement(731379..732659) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 732659 3897198 CYA_0726 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_474201.1 731379 R 321327 CDS YP_474202.1 86605439 3897199 complement(732514..733107) 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 733107 3897199 CYA_0727 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_474202.1 732514 R 321327 CDS YP_474203.1 86605440 3897200 complement(733729..734001) 1 NC_007775.1 identified by match to protein family HMM TIGR01873; CRISPR-associated Cas2 family protein 734001 cas2-2 3897200 cas2-2 Synechococcus sp. JA-3-3Ab CRISPR-associated Cas2 family protein YP_474203.1 733729 R 321327 CDS YP_474204.1 86605441 3897201 complement(734001..734948) 1 NC_007775.1 identified by match to protein family HMM TIGR00287; CRISPR-associated Cas1 family protein 734948 cas1-1 3897201 cas1-1 Synechococcus sp. JA-3-3Ab CRISPR-associated Cas1 family protein YP_474204.1 734001 R 321327 CDS YP_474205.1 86605442 3897202 complement(734975..735607) 1 NC_007775.1 identified by match to protein family HMM TIGR01907; CRISPR-associated Cse3 family protein 735607 cse3 3897202 cse3 Synechococcus sp. JA-3-3Ab CRISPR-associated Cse3 family protein YP_474205.1 734975 R 321327 CDS YP_474206.1 86605443 3897203 complement(735589..736212) 1 NC_007775.1 identified by match to protein family HMM TIGR01868; match to protein family HMM TIGR02593; CRISPR-associated Cas5 family protein 736212 cas5e 3897203 cas5e Synechococcus sp. JA-3-3Ab CRISPR-associated Cas5 family protein YP_474206.1 735589 R 321327 CDS YP_474207.1 86605444 3897204 complement(736216..737358) 1 NC_007775.1 identified by match to protein family HMM TIGR01869; CRISPR-associated Cse4 family protein 737358 cse4 3897204 cse4 Synechococcus sp. JA-3-3Ab CRISPR-associated Cse4 family protein YP_474207.1 736216 R 321327 CDS YP_474208.1 86605445 3897071 complement(737425..738024) 1 NC_007775.1 identified by match to protein family HMM TIGR02548; CRISPR-associated Cse2 family protein 738024 cse2 3897071 cse2 Synechococcus sp. JA-3-3Ab CRISPR-associated Cse2 family protein YP_474208.1 737425 R 321327 CDS YP_474209.1 86605446 3897072 complement(738036..739610) 1 NC_007775.1 identified by match to protein family HMM TIGR02547; CRISPR-associated Cse1 family protein 739610 cse1 3897072 cse1 Synechococcus sp. JA-3-3Ab CRISPR-associated Cse1 family protein YP_474209.1 738036 R 321327 CDS YP_474210.1 86605447 3897073 complement(739627..742308) 1 NC_007775.1 identified by match to protein family HMM PF00271; match to protein family HMM TIGR01587; CRISPR-associated helicase Cas3 742308 cas3 3897073 cas3 Synechococcus sp. JA-3-3Ab CRISPR-associated helicase Cas3 YP_474210.1 739627 R 321327 CDS YP_474211.1 86605448 3897074 complement(742311..743219) 1 NC_007775.1 identified by similarity to GB:BAD01867.1; hypothetical protein 743219 3897074 CYA_0736 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474211.1 742311 R 321327 CDS YP_529500.1 90296793 3897075 743274..743990 1 NC_007775.1 ISSoc8, transposase, interruption-N 743990 3897075 CYA_0737 Synechococcus sp. JA-3-3Ab ISSoc8, transposase, interruption-N YP_529500.1 743274 D 321327 CDS YP_529501.1 90296794 3969016 744741..745103 1 NC_007775.1 identified by match to protein family HMM PF07282; ISSoc8, transposase, interruption-C 745103 3969016 CYA_0739 Synechococcus sp. JA-3-3Ab ISSoc8, transposase, interruption-C YP_529501.1 744741 D 321327 CDS YP_474212.1 86605449 3897076 complement(745048..745221) 1 NC_007775.1 hypothetical protein 745221 3897076 CYA_0738 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474212.1 745048 R 321327 CDS YP_474213.1 86605450 3897077 complement(745386..746318) 1 NC_007775.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; RluA family pseudouridine synthase 746318 3897077 CYA_0740 Synechococcus sp. JA-3-3Ab RluA family pseudouridine synthase YP_474213.1 745386 R 321327 CDS YP_474214.1 86605451 3897078 746652..749111 1 NC_007775.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 749111 ppsA 3897078 ppsA Synechococcus sp. JA-3-3Ab phosphoenolpyruvate synthase YP_474214.1 746652 D 321327 CDS YP_474215.1 86605452 3897079 749181..750440 1 NC_007775.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; branched-chain alpha-keto acid dehydrogenase subunit E2 750440 3897079 CYA_0742 Synechococcus sp. JA-3-3Ab branched-chain alpha-keto acid dehydrogenase subunit E2 YP_474215.1 749181 D 321327 CDS YP_474216.1 86605453 3897080 750971..752635 1 NC_007775.1 lipoprotein 752635 3897080 CYA_0743 Synechococcus sp. JA-3-3Ab lipoprotein YP_474216.1 750971 D 321327 CDS YP_474217.1 86605454 3897081 complement(752909..753541) 1 NC_007775.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 753541 3897081 CYA_0744 Synechococcus sp. JA-3-3Ab NADH dehydrogenase subunit I YP_474217.1 752909 R 321327 CDS YP_474218.1 86605455 3897082 complement(753577..754698) 1 NC_007775.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 754698 3897082 CYA_0745 Synechococcus sp. JA-3-3Ab NADH dehydrogenase subunit H YP_474218.1 753577 R 321327 CDS YP_474219.1 86605456 3897083 complement(754760..754963) 1 NC_007775.1 hypothetical protein 754963 3897083 CYA_0746 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474219.1 754760 R 321327 CDS YP_474220.1 86605457 3897084 complement(754994..756178) 1 NC_007775.1 shuttles electrons from NAD(P)H, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradien; NAD(P)H-quinone oxidoreductase subunit H 756178 3897084 CYA_0747 Synechococcus sp. JA-3-3Ab NAD(P)H-quinone oxidoreductase subunit H YP_474220.1 754994 R 321327 CDS YP_474221.1 86605458 3897085 756346..756663 1 NC_007775.1 hypothetical protein 756663 3897085 CYA_0748 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474221.1 756346 D 321327 CDS YP_474222.1 86605459 3897086 complement(756755..757312) 1 NC_007775.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; carboxymuconolactone decarboxylase family protein 757312 3897086 CYA_0749 Synechococcus sp. JA-3-3Ab carboxymuconolactone decarboxylase family protein YP_474222.1 756755 R 321327 CDS YP_474223.1 86605460 3897087 complement(757386..757637) 1 NC_007775.1 hypothetical protein 757637 3897087 CYA_0750 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474223.1 757386 R 321327 CDS YP_474224.1 86605461 3897089 758348..759151 1 NC_007775.1 identified by similarity to SP:Q09063; match to protein family HMM PF01774; urease accessory protein UreD 759151 ureD 3897089 ureD Synechococcus sp. JA-3-3Ab urease accessory protein UreD YP_474224.1 758348 D 321327 CDS YP_474225.1 86605462 3897090 759189..760703 1 NC_007775.1 hypothetical protein 760703 3897090 CYA_0754 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474225.1 759189 D 321327 CDS YP_474226.1 86605463 3898159 complement(760890..762491) 1 NC_007775.1 identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 762491 3898159 CYA_0756 Synechococcus sp. JA-3-3Ab dolichyl-phosphate-mannose-protein mannosyltransferase YP_474226.1 760890 R 321327 CDS YP_474227.1 86605464 3898160 complement(762688..763470) 1 NC_007775.1 hypothetical protein 763470 3898160 CYA_0757 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474227.1 762688 R 321327 CDS YP_474228.1 86605465 3898161 complement(763464..764027) 1 NC_007775.1 hypothetical protein 764027 3898161 CYA_0758 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474228.1 763464 R 321327 CDS YP_474229.1 86605466 3898162 complement(764247..765707) 1 NC_007775.1 identified by similarity to SP:P51835; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 765707 ftsY 3898162 ftsY Synechococcus sp. JA-3-3Ab signal recognition particle-docking protein FtsY YP_474229.1 764247 R 321327 CDS YP_474230.1 86605467 3898163 complement(765802..766650) 1 NC_007775.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 766650 purU 3898163 purU Synechococcus sp. JA-3-3Ab formyltetrahydrofolate deformylase YP_474230.1 765802 R 321327 CDS YP_474231.1 86605468 3898164 complement(766952..767290) 1 NC_007775.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; twin-arginine translocation protein TatA 767290 tatA-1 3898164 tatA-1 Synechococcus sp. JA-3-3Ab twin-arginine translocation protein TatA YP_474231.1 766952 R 321327 CDS YP_474232.1 86605469 3898165 767499..770363 1 NC_007775.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 770363 secA 3898165 secA Synechococcus sp. JA-3-3Ab preprotein translocase subunit SecA YP_474232.1 767499 D 321327 CDS YP_474233.1 86605470 3898166 complement(770446..771204) 1 NC_007775.1 identified by match to protein family HMM PF04012; pspA/IM30 family protein 771204 3898166 CYA_0763 Synechococcus sp. JA-3-3Ab pspA/IM30 family protein YP_474233.1 770446 R 321327 CDS YP_474234.1 86605471 3898167 complement(771239..771949) 1 NC_007775.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 771949 3898167 CYA_0764 Synechococcus sp. JA-3-3Ab polysaccharide deacetylase YP_474234.1 771239 R 321327 CDS YP_474235.1 86605472 3898168 complement(771959..774466) 1 NC_007775.1 identified by match to protein family HMM PF01136; U32 family peptidase 774466 3898168 CYA_0765 Synechococcus sp. JA-3-3Ab U32 family peptidase YP_474235.1 771959 R 321327 CDS YP_474236.1 86605473 3898169 complement(774623..774748) 1 NC_007775.1 hypothetical protein 774748 3898169 CYA_0766 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474236.1 774623 R 321327 CDS YP_474237.1 86605474 3898170 complement(774780..775973) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase 775973 3898170 CYA_0767 Synechococcus sp. JA-3-3Ab ISSoc1, transposase YP_474237.1 774780 R 321327 CDS YP_474238.1 86605475 3898171 complement(776204..776698) 1 NC_007775.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR00249; phosphohistidine phosphatase SixA 776698 sixA 3898171 sixA Synechococcus sp. JA-3-3Ab phosphohistidine phosphatase SixA YP_474238.1 776204 R 321327 CDS YP_474239.1 86605476 3898172 776958..777299 1 NC_007775.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 777299 trx-1 3898172 trx-1 Synechococcus sp. JA-3-3Ab thioredoxin YP_474239.1 776958 D 321327 CDS YP_474240.1 86605477 3898173 777430..778500 1 NC_007775.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; hypothetical protein 778500 3898173 CYA_0770 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474240.1 777430 D 321327 CDS YP_474241.1 86605478 3898174 778523..779203 1 NC_007775.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 779203 trpF 3898174 trpF Synechococcus sp. JA-3-3Ab N-(5'-phosphoribosyl)anthranilate isomerase YP_474241.1 778523 D 321327 CDS YP_474242.1 86605479 3898175 complement(779226..780056) 1 NC_007775.1 hypothetical protein 780056 3898175 CYA_0772 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474242.1 779226 R 321327 CDS YP_474243.1 86605480 3897596 complement(780166..780984) 1 NC_007775.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridine synthase family protein 780984 3897596 CYA_0773 Synechococcus sp. JA-3-3Ab RNA pseudouridine synthase family protein YP_474243.1 780166 R 321327 CDS YP_474244.1 86605481 3897597 complement(781029..781538) 1 NC_007775.1 identified by similarity to GB:BAC92337.1; hypothetical protein 781538 3897597 CYA_0774 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474244.1 781029 R 321327 CDS YP_474245.1 86605482 3897598 781527..781706 1 NC_007775.1 hypothetical protein 781706 3897598 CYA_0775 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474245.1 781527 D 321327 CDS YP_474246.1 86605483 3897599 complement(781898..782347) 1 NC_007775.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 782347 rbfA 3897599 rbfA Synechococcus sp. JA-3-3Ab ribosome-binding factor A YP_474246.1 781898 R 321327 CDS YP_474247.1 86605484 3897600 complement(782541..783770) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc5, transposase 783770 3897600 CYA_0777 Synechococcus sp. JA-3-3Ab ISSoc5, transposase YP_474247.1 782541 R 321327 CDS YP_474248.1 86605485 3897601 783953..784174 1 NC_007775.1 identified by similarity to GB:BAC91135.1; hypothetical protein 784174 3897601 CYA_0778 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474248.1 783953 D 321327 CDS YP_474249.1 86605486 3897602 784113..784265 1 NC_007775.1 hypothetical protein 784265 3897602 CYA_0779 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474249.1 784113 D 321327 CDS YP_474250.1 86605487 3897603 784262..785701 1 NC_007775.1 identified by similarity to SP:P05327; match to protein family HMM PF00875; match to protein family HMM PF03441; deoxyribodipyrimidine photolyase 785701 phrB-2 3897603 phrB-2 Synechococcus sp. JA-3-3Ab deoxyribodipyrimidine photolyase YP_474250.1 784262 D 321327 CDS YP_474251.1 86605488 3897604 complement(785884..787233) 1 NC_007775.1 identified by match to protein family HMM PF00245; alkaline phosphatase 787233 3897604 CYA_0781 Synechococcus sp. JA-3-3Ab alkaline phosphatase YP_474251.1 785884 R 321327 CDS YP_474252.1 86605489 3897605 complement(787481..789847) 1 NC_007775.1 identified by match to protein family HMM PF01841; membrane-bound protease 789847 3897605 CYA_0782 Synechococcus sp. JA-3-3Ab membrane-bound protease YP_474252.1 787481 R 321327 CDS YP_474253.1 86605490 3897606 complement(789979..790077) 1 NC_007775.1 hypothetical protein 790077 3897606 CYA_0783 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474253.1 789979 R 321327 CDS YP_474254.1 86605491 3897607 790054..792954 1 NC_007775.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 792954 uvrA 3897607 uvrA Synechococcus sp. JA-3-3Ab excinuclease ABC subunit A YP_474254.1 790054 D 321327 CDS YP_474255.1 86605492 3897608 complement(793050..794243) 1 NC_007775.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 794243 3897608 CYA_0785 Synechococcus sp. JA-3-3Ab coproporphyrinogen III oxidase YP_474255.1 793050 R 321327 CDS YP_474256.1 86605493 3897610 795580..797388 1 NC_007775.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 797388 dnaK-2 3897610 dnaK-2 Synechococcus sp. JA-3-3Ab molecular chaperone DnaK YP_474256.1 795580 D 321327 CDS YP_474257.1 86605494 3897611 797505..798689 1 NC_007775.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 798689 dnaJ 3897611 dnaJ Synechococcus sp. JA-3-3Ab chaperone protein DnaJ YP_474257.1 797505 D 321327 CDS YP_474258.1 86605495 3897612 798686..798949 1 NC_007775.1 identified by similarity to GB:BAC08540.1; hypothetical protein 798949 3897612 CYA_0789 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474258.1 798686 D 321327 CDS YP_474259.1 86605496 3897613 798946..800037 1 NC_007775.1 identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157; ribosome small subunit-dependent GTPase A 800037 rsgA 3897613 rsgA Synechococcus sp. JA-3-3Ab ribosome small subunit-dependent GTPase A YP_474259.1 798946 D 321327 CDS YP_474260.1 86605497 3897614 800172..801692 1 NC_007775.1 hypothetical protein 801692 3897614 CYA_0791 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474260.1 800172 D 321327 CDS YP_474261.1 86605498 3897615 801679..801798 1 NC_007775.1 hypothetical protein 801798 3897615 CYA_0792 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474261.1 801679 D 321327 CDS YP_474262.1 86605499 3898176 802085..803077 1 NC_007775.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 803077 3898176 CYA_0793 Synechococcus sp. JA-3-3Ab pentapeptide repeat-containing protein YP_474262.1 802085 D 321327 CDS YP_474263.1 86605500 3898177 803159..804700 1 NC_007775.1 identified by match to protein family HMM PF00512; sensor histidine kinase 804700 3898177 CYA_0794 Synechococcus sp. JA-3-3Ab sensor histidine kinase YP_474263.1 803159 D 321327 CDS YP_474264.1 86605501 3898178 804796..805575 1 NC_007775.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 805575 3898178 CYA_0795 Synechococcus sp. JA-3-3Ab sensor histidine kinase YP_474264.1 804796 D 321327 CDS YP_474265.1 86605502 3898179 805640..806377 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; DNA-binding response regulator 806377 3898179 CYA_0796 Synechococcus sp. JA-3-3Ab DNA-binding response regulator YP_474265.1 805640 D 321327 CDS YP_474266.1 86605503 3898180 complement(806399..808078) 1 NC_007775.1 hypothetical protein 808078 3898180 CYA_0797 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474266.1 806399 R 321327 CDS YP_474267.1 86605504 3898181 complement(808142..808642) 1 NC_007775.1 identified by match to protein family HMM PF00075; ribonuclease H 808642 rnhA 3898181 rnhA Synechococcus sp. JA-3-3Ab ribonuclease H YP_474267.1 808142 R 321327 CDS YP_474268.1 86605505 3898182 complement(809059..810159) 1 NC_007775.1 identified by match to protein family HMM PF07085; DRTGG domain-containing protein 810159 3898182 CYA_0799 Synechococcus sp. JA-3-3Ab DRTGG domain-containing protein YP_474268.1 809059 R 321327 CDS YP_474269.1 86605506 3898183 complement(810358..811815) 1 NC_007775.1 identified by similarity to GB:BAA32063.1; match to protein family HMM PF02386; Trk family K(+) transporter 811815 3898183 CYA_0800 Synechococcus sp. JA-3-3Ab Trk family K(+) transporter YP_474269.1 810358 R 321327 CDS YP_474270.1 86605507 3898184 complement(811827..812486) 1 NC_007775.1 identified by match to protein family HMM PF01210; match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF03446; Trk family K(+) transporter 812486 3898184 CYA_0801 Synechococcus sp. JA-3-3Ab Trk family K(+) transporter YP_474270.1 811827 R 321327 CDS YP_474271.1 86605508 3898185 complement(812563..813909) 1 NC_007775.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 813909 clpX 3898185 clpX Synechococcus sp. JA-3-3Ab ATP-dependent protease ATP-binding subunit ClpX YP_474271.1 812563 R 321327 CDS YP_474272.1 86605509 3898186 complement(814452..816473) 1 NC_007775.1 identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; NAD-dependent DNA ligase 816473 ligA 3898186 ligA Synechococcus sp. JA-3-3Ab NAD-dependent DNA ligase YP_474272.1 814452 R 321327 CDS YP_474273.1 86605510 3898187 complement(816711..817436) 1 NC_007775.1 identified by match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191; ribonuclease III 817436 rnc 3898187 rnc Synechococcus sp. JA-3-3Ab ribonuclease III YP_474273.1 816711 R 321327 CDS YP_474274.1 86605511 3898188 817528..817860 1 NC_007775.1 identified by similarity to PIR:AD1913; hypothetical protein 817860 3898188 CYA_0805 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474274.1 817528 D 321327 CDS YP_474275.1 86605512 3898189 complement(817918..818223) 1 NC_007775.1 hypothetical protein 818223 3898189 CYA_0806 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474275.1 817918 R 321327 CDS YP_474276.1 86605513 3898190 complement(818226..819443) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 819443 3898190 CYA_0807 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_474276.1 818226 R 321327 CDS YP_474277.1 86605514 3898191 complement(819298..819891) 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 819891 3898191 CYA_0808 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_474277.1 819298 R 321327 CDS YP_474278.1 86605515 3898192 complement(820043..821119) 1 NC_007775.1 identified by match to protein family HMM PF00293; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR00586; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase 821119 mutY 3898192 mutY Synechococcus sp. JA-3-3Ab A/G-specific adenine glycosylase YP_474278.1 820043 R 321327 CDS YP_474279.1 86605516 3898193 complement(821705..822037) 1 NC_007775.1 hypothetical protein 822037 3898193 CYA_0810 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474279.1 821705 R 321327 CDS YP_474280.1 86605517 3898194 822469..823629 1 NC_007775.1 identified by match to protein family HMM PF00144; carboxylesterase 823629 3898194 CYA_0811 Synechococcus sp. JA-3-3Ab carboxylesterase YP_474280.1 822469 D 321327 CDS YP_474281.1 86605518 3898139 823732..824013 1 NC_007775.1 identified by match to protein family HMM PF01479; S4 domain-containing protein 824013 3898139 CYA_0812 Synechococcus sp. JA-3-3Ab S4 domain-containing protein YP_474281.1 823732 D 321327 CDS YP_474282.1 86605519 3898140 824515..825198 1 NC_007775.1 identified by similarity to PIR:AH1843; membrane protein 825198 3898140 CYA_0813 Synechococcus sp. JA-3-3Ab membrane protein YP_474282.1 824515 D 321327 CDS YP_474283.1 86605520 3898141 825281..825838 1 NC_007775.1 hypothetical protein 825838 3898141 CYA_0814 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474283.1 825281 D 321327 CDS YP_474284.1 86605521 3898142 825882..827066 1 NC_007775.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 827066 aspC 3898142 aspC Synechococcus sp. JA-3-3Ab aspartate aminotransferase YP_474284.1 825882 D 321327 CDS YP_474285.1 86605522 3898143 827229..827486 1 NC_007775.1 hypothetical protein 827486 3898143 CYA_0816 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474285.1 827229 D 321327 CDS YP_474286.1 86605523 3898145 829654..830793 1 NC_007775.1 identified by similarity to SP:Q03046; match to protein family HMM PF00266; isopenicillin N-epimerase 830793 cefD 3898145 cefD Synechococcus sp. JA-3-3Ab isopenicillin N-epimerase YP_474286.1 829654 D 321327 CDS YP_474287.1 86605524 3898146 830790..830894 1 NC_007775.1 hypothetical protein 830894 3898146 CYA_0819 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474287.1 830790 D 321327 CDS YP_474288.1 86605525 3898147 830936..833575 1 NC_007775.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 833575 3898147 CYA_0820 Synechococcus sp. JA-3-3Ab radical SAM domain-containing protein YP_474288.1 830936 D 321327 CDS YP_474289.1 86605526 3898148 834601..836736 1 NC_007775.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease 836736 3898148 CYA_0821 Synechococcus sp. JA-3-3Ab ribonuclease YP_474289.1 834601 D 321327 CDS YP_474290.1 86605527 3898149 836795..837460 1 NC_007775.1 identified by similarity to SP:O31744; match to protein family HMM PF01351; ribonuclease HII 837460 rnhB 3898149 rnhB Synechococcus sp. JA-3-3Ab ribonuclease HII YP_474290.1 836795 D 321327 CDS YP_474291.1 86605528 3898151 complement(837615..838040) 1 NC_007775.1 hypothetical protein 838040 3898151 CYA_0824 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474291.1 837615 R 321327 CDS YP_474292.1 86605529 3898152 complement(838116..838448) 1 NC_007775.1 identified by similarity to SP:O68669; match to protein family HMM PF00741; gas vesicle protein J 838448 gvpJ 3898152 gvpJ Synechococcus sp. JA-3-3Ab gas vesicle protein J YP_474292.1 838116 R 321327 CDS YP_474293.1 86605530 3898153 complement(838488..839372) 1 NC_007775.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728; match to protein family HMM TIGR02640; gas vesicle protein GvpN 839372 gvpN 3898153 gvpN Synechococcus sp. JA-3-3Ab gas vesicle protein GvpN YP_474293.1 838488 R 321327 CDS YP_474294.1 86605531 3898154 complement(839461..840459) 1 NC_007775.1 identified by match to protein family HMM TIGR02641; gas vesicle structural protein GvpC 840459 gvpC 3898154 gvpC Synechococcus sp. JA-3-3Ab gas vesicle structural protein GvpC YP_474294.1 839461 R 321327 CDS YP_474295.1 86605532 3898155 complement(840868..841071) 1 NC_007775.1 hypothetical protein 841071 3898155 CYA_0828 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474295.1 840868 R 321327 CDS YP_474296.1 86605533 3898156 complement(841132..841350) 1 NC_007775.1 involved in formation of gas vesicle which are protein structures that contain gas involved in buoyancy; part of an operon of other gas vesicle synthesis proteins; gas vesicle synthesis protein GvpA 841350 gvpA 3898156 gvpA Synechococcus sp. JA-3-3Ab gas vesicle synthesis protein GvpA YP_474296.1 841132 R 321327 CDS YP_474297.1 86605534 3898157 841733..841951 1 NC_007775.1 hypothetical protein 841951 3898157 CYA_0830 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474297.1 841733 D 321327 CDS YP_474298.1 86605535 3898120 842103..842786 1 NC_007775.1 identified by match to protein family HMM PF02830; V4R domain-containing protein 842786 3898120 CYA_0831 Synechococcus sp. JA-3-3Ab V4R domain-containing protein YP_474298.1 842103 D 321327 CDS YP_474299.1 86605536 3898121 842783..843034 1 NC_007775.1 hypothetical protein 843034 3898121 CYA_0832 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474299.1 842783 D 321327 CDS YP_474300.1 86605537 3898122 843080..843559 1 NC_007775.1 identified by similarity to GB:BAC09852.1; hypothetical protein 843559 3898122 CYA_0833 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474300.1 843080 D 321327 CDS YP_474301.1 86605538 3898123 843616..844305 1 NC_007775.1 V4R domain-containing protein 844305 3898123 CYA_0834 Synechococcus sp. JA-3-3Ab V4R domain-containing protein YP_474301.1 843616 D 321327 CDS YP_474302.1 86605539 3898124 844397..844771 1 NC_007775.1 identified by similarity to SP:P19080; match to protein family HMM PF07736; match to protein family HMM TIGR01796; chorismate mutase 844771 aroH 3898124 aroH Synechococcus sp. JA-3-3Ab chorismate mutase YP_474302.1 844397 D 321327 CDS YP_474303.1 86605540 3898125 complement(844768..845169) 1 NC_007775.1 hypothetical protein 845169 3898125 CYA_0835 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474303.1 844768 R 321327 CDS YP_474304.1 86605541 3898126 845336..846118 1 NC_007775.1 identified by similarity to SP:Q55823; hypothetical protein 846118 3898126 CYA_0837 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474304.1 845336 D 321327 CDS YP_474305.1 86605542 3898127 complement(846251..849187) 1 NC_007775.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 849187 ppc 3898127 ppc Synechococcus sp. JA-3-3Ab phosphoenolpyruvate carboxylase YP_474305.1 846251 R 321327 CDS YP_474306.1 86605543 3898128 complement(849310..849567) 1 NC_007775.1 identified by similarity to GB:BAD79475.1; hypothetical protein 849567 3898128 CYA_0839 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474306.1 849310 R 321327 CDS YP_474307.1 86605544 3898129 850888..851364 1 NC_007775.1 hypothetical protein 851364 3898129 CYA_0841 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474307.1 850888 D 321327 CDS YP_474308.1 86605545 3898130 complement(851354..851761) 1 NC_007775.1 identified by match to protein family HMM PF02518; sensor histidine kinase 851761 3898130 CYA_0840 Synechococcus sp. JA-3-3Ab sensor histidine kinase YP_474308.1 851354 R 321327 CDS YP_474309.1 86605546 3898131 851871..852020 1 NC_007775.1 hypothetical protein 852020 3898131 CYA_0842 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474309.1 851871 D 321327 CDS YP_474310.1 86605547 3898132 852141..852719 1 NC_007775.1 identified by similarity to PIR:S76054; hypothetical protein 852719 3898132 CYA_0843 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474310.1 852141 D 321327 CDS YP_474311.1 86605548 3898133 852908..853696 1 NC_007775.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 853696 map-1 3898133 map-1 Synechococcus sp. JA-3-3Ab methionine aminopeptidase YP_474311.1 852908 D 321327 CDS YP_474312.1 86605549 3898134 853703..855547 1 NC_007775.1 identified by match to protein family HMM PF00571; match to protein family HMM PF00654; chloride channel (ClC) family protein 855547 3898134 CYA_0845 Synechococcus sp. JA-3-3Ab chloride channel (ClC) family protein YP_474312.1 853703 D 321327 CDS YP_474313.1 86605550 3898135 complement(855551..856219) 1 NC_007775.1 identified by match to protein family HMM PF00730; base excision DNA repair protein 856219 3898135 CYA_0846 Synechococcus sp. JA-3-3Ab base excision DNA repair protein YP_474313.1 855551 R 321327 CDS YP_474314.1 86605551 3898136 complement(856359..857447) 1 NC_007775.1 identified by similarity to SP:P17443; match to protein family HMM PF03033; match to protein family HMM PF04101; match to protein family HMM TIGR01133; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 857447 murG 3898136 murG Synechococcus sp. JA-3-3Ab undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase YP_474314.1 856359 R 321327 CDS YP_474315.1 86605552 3898137 complement(857455..858429) 1 NC_007775.1 similar to Arabidopsis thaliana photosystem II assembly protein; Ycf48-like protein 858429 3898137 CYA_0848 Synechococcus sp. JA-3-3Ab Ycf48-like protein YP_474315.1 857455 R 321327 CDS YP_474316.1 86605553 3898138 complement(858459..858764) 1 NC_007775.1 identified by match to protein family HMM PF00301; rubredoxin 858764 3898138 CYA_0849 Synechococcus sp. JA-3-3Ab rubredoxin YP_474316.1 858459 R 321327 CDS YP_474317.1 86605554 3898100 859234..859644 1 NC_007775.1 identified by match to protein family HMM PF00498; FHA domain-containing protein 859644 3898100 CYA_0850 Synechococcus sp. JA-3-3Ab FHA domain-containing protein YP_474317.1 859234 D 321327 CDS YP_474318.1 86605555 3898101 860073..860210 1 NC_007775.1 hypothetical protein 860210 3898101 CYA_0851 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474318.1 860073 D 321327 CDS YP_474319.1 86605556 3898102 860606..861961 1 NC_007775.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 861961 accC 3898102 accC Synechococcus sp. JA-3-3Ab acetyl-CoA carboxylase biotin carboxylase subunit YP_474319.1 860606 D 321327 CDS YP_474320.1 86605557 3898103 862122..863051 1 NC_007775.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase family site specific recombinase 863051 3898103 CYA_0853 Synechococcus sp. JA-3-3Ab phage integrase family site specific recombinase YP_474320.1 862122 D 321327 CDS YP_474321.1 86605558 3898104 complement(863105..863200) 1 NC_007775.1 hypothetical protein 863200 3898104 CYA_0854 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474321.1 863105 R 321327 CDS YP_474322.1 86605559 3898105 complement(863215..864228) 1 NC_007775.1 hypothetical protein 864228 3898105 CYA_0855 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474322.1 863215 R 321327 CDS YP_474323.1 86605560 3898106 complement(864219..864821) 1 NC_007775.1 identified by match to protein family HMM PF00226; DnaJ domain-containing protein 864821 3898106 CYA_0856 Synechococcus sp. JA-3-3Ab DnaJ domain-containing protein YP_474323.1 864219 R 321327 CDS YP_474324.1 86605561 3898107 complement(865147..865431) 1 NC_007775.1 hypothetical protein 865431 3898107 CYA_0857 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474324.1 865147 R 321327 CDS YP_474325.1 86605562 3898108 complement(865478..866230) 1 NC_007775.1 identified by similarity to PIR:S75174; match to protein family HMM PF04481; hypothetical protein 866230 3898108 CYA_0858 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474325.1 865478 R 321327 CDS YP_474326.1 86605563 3898109 866403..867308 1 NC_007775.1 identified by similarity to SP:P70999; match to protein family HMM PF00491; match to protein family HMM TIGR01230; agmatinase 867308 speB 3898109 speB Synechococcus sp. JA-3-3Ab agmatinase YP_474326.1 866403 D 321327 CDS YP_474327.1 86605564 3898110 867735..868409 1 NC_007775.1 identified by similarity to GB:AAO80804.1; match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 868409 3898110 CYA_0860 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474327.1 867735 D 321327 CDS YP_474328.1 86605565 3898111 868983..869552 1 NC_007775.1 identified by similarity to PIR:AF1867; match to protein family HMM PF04472; hypothetical protein 869552 3898111 CYA_0861 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474328.1 868983 D 321327 CDS YP_474329.1 86605566 3898112 869558..870361 1 NC_007775.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 870361 proC 3898112 proC Synechococcus sp. JA-3-3Ab pyrroline-5-carboxylate reductase YP_474329.1 869558 D 321327 CDS YP_474330.1 86605567 3898113 complement(870347..871561) 1 NC_007775.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 871561 3898113 CYA_0862 Synechococcus sp. JA-3-3Ab pyridine nucleotide-disulfide oxidoreductase YP_474330.1 870347 R 321327 CDS YP_474331.1 86605568 3898114 complement(871611..872861) 1 NC_007775.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator transporter 872861 3898114 CYA_0864 Synechococcus sp. JA-3-3Ab major facilitator transporter YP_474331.1 871611 R 321327 CDS YP_474332.1 86605569 3898115 complement(872893..872991) 1 NC_007775.1 hypothetical protein 872991 3898115 CYA_0865 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474332.1 872893 R 321327 CDS YP_474333.1 86605570 3898116 complement(872992..873099) 1 NC_007775.1 hypothetical protein 873099 3898116 CYA_0866 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474333.1 872992 R 321327 CDS YP_474334.1 86605571 3898117 complement(873307..873600) 1 NC_007775.1 identified by similarity to GB:BAC10003.1; hypothetical protein 873600 3898117 CYA_0867 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474334.1 873307 R 321327 CDS YP_474335.1 86605572 3898118 873814..874056 1 NC_007775.1 identified by similarity to PIR:AB2198; hypothetical protein 874056 3898118 CYA_0868 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474335.1 873814 D 321327 CDS YP_474336.1 86605573 3898119 874178..875191 1 NC_007775.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 875191 hemF 3898119 hemF Synechococcus sp. JA-3-3Ab coproporphyrinogen III oxidase YP_474336.1 874178 D 321327 CDS YP_474337.1 86605574 3897826 875223..875918 1 NC_007775.1 identified by similarity to SP:Q53547; match to protein family HMM PF02230; phospholipase/carboxylesterase family protein 875918 3897826 CYA_0870 Synechococcus sp. JA-3-3Ab phospholipase/carboxylesterase family protein YP_474337.1 875223 D 321327 CDS YP_474338.1 86605575 3897827 875992..877470 1 NC_007775.1 identified by similarity to GB:BAD78368.1; hypothetical protein 877470 3897827 CYA_0872 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474338.1 875992 D 321327 CDS YP_474339.1 86605576 3897828 complement(877467..878363) 1 NC_007775.1 identified by match to protein family HMM TIGR02619; CRISPR-associated protein 878363 3897828 CYA_0871 Synechococcus sp. JA-3-3Ab CRISPR-associated protein YP_474339.1 877467 R 321327 CDS YP_474340.1 86605577 3897829 complement(878417..879133) 1 NC_007775.1 hypothetical protein 879133 3897829 CYA_0873 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474340.1 878417 R 321327 CDS YP_474341.1 86605578 3897830 complement(879144..880196) 1 NC_007775.1 identified by similarity to PIR:AC1990; match to protein family HMM PF03787; match to protein family HMM TIGR02581; CRISPR-associated RAMP family protein 880196 3897830 CYA_0874 Synechococcus sp. JA-3-3Ab CRISPR-associated RAMP family protein YP_474341.1 879144 R 321327 CDS YP_474342.1 86605579 3897831 complement(880193..880651) 1 NC_007775.1 identified by similarity to PIR:AD1990; hypothetical protein 880651 3897831 CYA_0875 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474342.1 880193 R 321327 CDS YP_474343.1 86605580 3897832 complement(880648..881622) 1 NC_007775.1 identified by match to protein family HMM PF03787; CRISPR-associated RAMP family protein 881622 3897832 CYA_0876 Synechococcus sp. JA-3-3Ab CRISPR-associated RAMP family protein YP_474343.1 880648 R 321327 CDS YP_474344.1 86605581 3897833 complement(881677..882519) 1 NC_007775.1 identified by match to protein family HMM PF03787; match to protein family HMM TIGR02581; CRISPR-associated Csm3 family protein 882519 3897833 CYA_0877 Synechococcus sp. JA-3-3Ab CRISPR-associated Csm3 family protein YP_474344.1 881677 R 321327 CDS YP_474345.1 86605582 3897834 complement(882527..882664) 1 NC_007775.1 hypothetical protein 882664 3897834 CYA_0878 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474345.1 882527 R 321327 CDS YP_474346.1 86605583 3897835 complement(882668..883114) 1 NC_007775.1 hypothetical protein 883114 3897835 CYA_0879 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474346.1 882668 R 321327 CDS YP_474347.1 86605584 3897836 complement(883111..884334) 1 NC_007775.1 identified by match to protein family HMM PF03787; match to protein family HMM TIGR02674; CRISPR-associated RAMP Csx10 family protein 884334 csx10 3897836 csx10 Synechococcus sp. JA-3-3Ab CRISPR-associated RAMP Csx10 family protein YP_474347.1 883111 R 321327 CDS YP_474348.1 86605585 3897837 complement(884334..885047) 1 NC_007775.1 identified by match to protein family HMM PF03787; CRISPR-associated RAMP family protein 885047 3897837 CYA_0881 Synechococcus sp. JA-3-3Ab CRISPR-associated RAMP family protein YP_474348.1 884334 R 321327 CDS YP_474349.1 86605586 3897838 complement(885047..887242) 1 NC_007775.1 identified by match to protein family HMM TIGR01872; match to protein family HMM TIGR02577; CRISPR-associated RAMP Crm2 family protein 887242 crm2-1 3897838 crm2-1 Synechococcus sp. JA-3-3Ab CRISPR-associated RAMP Crm2 family protein YP_474349.1 885047 R 321327 CDS YP_474350.1 86605587 3897839 887772..888923 1 NC_007775.1 identified by match to protein family HMM TIGR01877; CRISPR-associated Cas family protein 888923 cas6 3897839 cas6 Synechococcus sp. JA-3-3Ab CRISPR-associated Cas family protein YP_474350.1 887772 D 321327 CDS YP_474352.1 86605589 3897880 complement(892609..892887) 1 NC_007775.1 identified by match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein 892887 cas2-3 3897880 cas2-3 Synechococcus sp. JA-3-3Ab CRISPR-associated Cas2 family protein YP_474352.1 892609 R 321327 CDS YP_474353.1 86605590 3897882 893440..894633 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase 894633 3897882 CYA_0887 Synechococcus sp. JA-3-3Ab ISSoc1, transposase YP_474353.1 893440 D 321327 CDS YP_474354.1 86605591 3897883 complement(894897..895712) 1 NC_007775.1 identified by similarity to GB:BAD01980.1; hypothetical protein 895712 3897883 CYA_0889 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474354.1 894897 R 321327 CDS YP_474355.1 86605592 3897884 896418..897338 1 NC_007775.1 identified by match to protein family HMM TIGR02579; CRISPR-associated Csx3 family protein 897338 csx3 3897884 csx3 Synechococcus sp. JA-3-3Ab CRISPR-associated Csx3 family protein YP_474355.1 896418 D 321327 CDS YP_474356.1 86605593 3897885 complement(897554..898417) 1 NC_007775.1 identified by similarity to SP:P38045; similarity to SP:P38046; match to protein family HMM PF00005; match to protein family HMM TIGR01184; nitrate ABC transporter ATP-binding protein NtrD 898417 ntrD-2 3897885 ntrD-2 Synechococcus sp. JA-3-3Ab nitrate ABC transporter ATP-binding protein NtrD YP_474356.1 897554 R 321327 CDS YP_474357.1 86605594 3897886 complement(898480..900489) 1 NC_007775.1 identified by similarity to SP:P38045; match to protein family HMM PF00005; match to protein family HMM TIGR01184; nitrate ABC transporter ATP-binding protein NtrC 900489 ntrC-2 3897886 ntrC-2 Synechococcus sp. JA-3-3Ab nitrate ABC transporter ATP-binding protein NtrC YP_474357.1 898480 R 321327 CDS YP_474358.1 86605595 3898234 complement(900649..901476) 1 NC_007775.1 identified by similarity to GB:AAB86903.1; match to protein family HMM PF00528; match to protein family HMM TIGR01183; nitrate ABC transporter permease 901476 ntrB-2 3898234 ntrB-2 Synechococcus sp. JA-3-3Ab nitrate ABC transporter permease YP_474358.1 900649 R 321327 CDS YP_474359.1 86605596 3898235 complement(902016..903320) 1 NC_007775.1 identified by similarity to SP:P39660; similarity to GB:AAQ23048.1; match to protein family HMM TIGR01409; nitrate/nitrite/cyanate ABC transporter periplasmic substrate-binding protein 903320 3898235 CYA_0894 Synechococcus sp. JA-3-3Ab nitrate/nitrite/cyanate ABC transporter periplasmic substrate-binding protein YP_474359.1 902016 R 321327 CDS YP_474360.1 86605597 3898236 903531..904487 1 NC_007775.1 tocopherol cyclase 904487 3898236 CYA_0896 Synechococcus sp. JA-3-3Ab tocopherol cyclase YP_474360.1 903531 D 321327 CDS YP_474361.1 86605598 3898237 complement(904453..905985) 1 NC_007775.1 light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit B 905985 chlB 3898237 chlB Synechococcus sp. JA-3-3Ab light-independent protochlorophyllide reductase subunit B YP_474361.1 904453 R 321327 CDS YP_474362.1 86605599 3898238 906359..906496 1 NC_007775.1 hypothetical protein 906496 3898238 CYA_0897 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474362.1 906359 D 321327 CDS YP_474363.1 86605600 3898239 906579..906881 1 NC_007775.1 identified by match to protein family HMM PF06967; mo-dependent nitrogenase family protein 906881 3898239 CYA_0898 Synechococcus sp. JA-3-3Ab mo-dependent nitrogenase family protein YP_474363.1 906579 D 321327 CDS YP_474364.1 86605601 3898240 complement(907420..907773) 1 NC_007775.1 identified by similarity to PIR:S75476; match to protein family HMM PF01934; hypothetical protein 907773 3898240 CYA_0899 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474364.1 907420 R 321327 CDS YP_474365.1 86605602 3898241 complement(907763..908056) 1 NC_007775.1 identified by match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein 908056 3898241 CYA_0900 Synechococcus sp. JA-3-3Ab nucleotidyltransferase domain-containing protein YP_474365.1 907763 R 321327 CDS YP_474366.1 86605603 3898242 complement(908362..913500) 1 NC_007775.1 identified by similarity to PIR:AE1864; match to protein family HMM PF04357; hypothetical protein 913500 3898242 CYA_0901 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474366.1 908362 R 321327 CDS YP_474367.1 86605604 3898243 913576..913902 1 NC_007775.1 identified by match to protein family HMM PF01740; anti-anti-sigma factor family protein 913902 3898243 CYA_0902 Synechococcus sp. JA-3-3Ab anti-anti-sigma factor family protein YP_474367.1 913576 D 321327 CDS YP_474368.1 86605605 3898244 913923..914639 1 NC_007775.1 catalyzes the formation of precorrin-3 from precorrin-2; precorrin-2 methyltransferase 914639 cobI 3898244 cobI Synechococcus sp. JA-3-3Ab precorrin-2 methyltransferase YP_474368.1 913923 D 321327 CDS YP_474369.1 86605606 3898245 915448..915594 1 NC_007775.1 hypothetical protein 915594 3898245 CYA_0904 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474369.1 915448 D 321327 CDS YP_474370.1 86605607 3898246 915781..916449 1 NC_007775.1 identified by match to protein family HMM PF00583; acetyltransferase 916449 3898246 CYA_0905 Synechococcus sp. JA-3-3Ab acetyltransferase YP_474370.1 915781 D 321327 CDS YP_474371.1 86605608 3898247 916527..917060 1 NC_007775.1 identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 917060 3898247 CYA_0907 Synechococcus sp. JA-3-3Ab anti-oxidant AhpCTSA family protein YP_474371.1 916527 D 321327 CDS YP_474372.1 86605609 3898248 complement(917057..917242) 1 NC_007775.1 identified by similarity to PIR:AD2255; hypothetical protein 917242 3898248 CYA_0906 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474372.1 917057 R 321327 CDS YP_474373.1 86605610 3898249 917241..917993 1 NC_007775.1 identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase family protein 917993 3898249 CYA_0909 Synechococcus sp. JA-3-3Ab glycerophosphoryl diester phosphodiesterase family protein YP_474373.1 917241 D 321327 CDS YP_474374.1 86605611 3898250 complement(917990..918616) 1 NC_007775.1 identified by similarity to SP:P24206; match to protein family HMM PF01135; match to protein family HMM TIGR00080; protein-L-isoaspartate(D-aspartate) O-methyltransferase 918616 pcm 3898250 pcm Synechococcus sp. JA-3-3Ab protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_474374.1 917990 R 321327 CDS YP_474375.1 86605612 3898251 complement(918955..920313) 1 NC_007775.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; hypothetical protein 920313 3898251 CYA_0910 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474375.1 918955 R 321327 CDS YP_474376.1 86605613 3898252 complement(920306..921313) 1 NC_007775.1 identified by match to protein family HMM PF03668; hypothetical protein 921313 3898252 CYA_0911 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474376.1 920306 R 321327 CDS YP_474377.1 86605614 3898253 complement(921363..922058) 1 NC_007775.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 922058 nth 3898253 nth Synechococcus sp. JA-3-3Ab endonuclease III YP_474377.1 921363 R 321327 CDS YP_474378.1 86605615 3898254 complement(922065..923165) 1 NC_007775.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054; membrane-associated zinc metalloprotease 923165 3898254 CYA_0913 Synechococcus sp. JA-3-3Ab membrane-associated zinc metalloprotease YP_474378.1 922065 R 321327 CDS YP_474379.1 86605616 3898255 complement(923278..923520) 1 NC_007775.1 identified by match to protein family HMM PF01106; NifU domain-containing protein 923520 3898255 CYA_0914 Synechococcus sp. JA-3-3Ab NifU domain-containing protein YP_474379.1 923278 R 321327 CDS YP_474380.1 86605617 3898256 923754..924848 1 NC_007775.1 identified by match to protein family HMM PF01850; match to protein family HMM PF01938; PIN/TRAM domain-containing protein 924848 3898256 CYA_0915 Synechococcus sp. JA-3-3Ab PIN/TRAM domain-containing protein YP_474380.1 923754 D 321327 CDS YP_474381.1 86605618 3898257 924902..926623 1 NC_007775.1 identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; sensor histidine kinase 926623 3898257 CYA_0916 Synechococcus sp. JA-3-3Ab sensor histidine kinase YP_474381.1 924902 D 321327 CDS YP_474382.1 86605619 3898258 926631..927470 1 NC_007775.1 identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755; dimethyladenosine transferase 927470 ksgA 3898258 ksgA Synechococcus sp. JA-3-3Ab dimethyladenosine transferase YP_474382.1 926631 D 321327 CDS YP_474383.1 86605620 3898259 927519..928223 1 NC_007775.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 928223 fabG 3898259 fabG Synechococcus sp. JA-3-3Ab 3-ketoacyl-ACP reductase YP_474383.1 927519 D 321327 CDS YP_474384.1 86605621 3898260 928298..929104 1 NC_007775.1 identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 36K type 929104 sppA-1 3898260 sppA-1 Synechococcus sp. JA-3-3Ab signal peptide peptidase SppA, 36K type YP_474384.1 928298 D 321327 CDS YP_474385.1 86605622 3898261 complement(929252..930337) 1 NC_007775.1 identified by similarity to PIR:AB2462; hypothetical protein 930337 3898261 CYA_0920 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474385.1 929252 R 321327 CDS YP_474386.1 86605623 3898262 complement(931016..931129) 1 NC_007775.1 hypothetical protein 931129 3898262 CYA_0921 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474386.1 931016 R 321327 CDS YP_474387.1 86605624 3898263 complement(931131..931571) 1 NC_007775.1 identified by similarity to GB:BAC07718.1; hypothetical protein 931571 3898263 CYA_0922 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474387.1 931131 R 321327 CDS YP_474388.1 86605625 3898264 932014..933912 1 NC_007775.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02254; monovalent cation:proton antiporter-2 (CPA2) family protein 933912 3898264 CYA_0923 Synechococcus sp. JA-3-3Ab monovalent cation:proton antiporter-2 (CPA2) family protein YP_474388.1 932014 D 321327 CDS YP_474389.1 86605626 3898265 complement(933940..935304) 1 NC_007775.1 identified by match to protein family HMM PF01839; match to protein family HMM PF07593; FG-GAP repeat- ASPIC/UnbV domain-containing protein 935304 3898265 CYA_0924 Synechococcus sp. JA-3-3Ab FG-GAP repeat- ASPIC/UnbV domain-containing protein YP_474389.1 933940 R 321327 CDS YP_474390.1 86605627 3898266 935393..935695 1 NC_007775.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 935695 rpsT 3898266 rpsT Synechococcus sp. JA-3-3Ab 30S ribosomal protein S20 YP_474390.1 935393 D 321327 CDS YP_474391.1 86605628 3898267 936772..937035 1 NC_007775.1 identified by match to protein family HMM PF02195; nuclease 937035 3898267 CYA_0926 Synechococcus sp. JA-3-3Ab nuclease YP_474391.1 936772 D 321327 CDS YP_474392.1 86605629 3898268 complement(937057..937728) 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family DNA-binding response regulator 937728 3898268 CYA_0927 Synechococcus sp. JA-3-3Ab LuxR family DNA-binding response regulator YP_474392.1 937057 R 321327 CDS YP_474393.1 86605630 3898269 complement(937912..938700) 1 NC_007775.1 hypothetical protein 938700 3898269 CYA_0928 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474393.1 937912 R 321327 CDS YP_474394.1 86605631 3898270 complement(938697..939455) 1 NC_007775.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase 939455 cobA 3898270 cobA Synechococcus sp. JA-3-3Ab uroporphyrin-III C-methyltransferase YP_474394.1 938697 R 321327 CDS YP_474395.1 86605632 3898271 complement(939523..940422) 1 NC_007775.1 identified by similarity to SP:O87690; match to protein family HMM PF01903; CbiX family protein 940422 3898271 CYA_0930 Synechococcus sp. JA-3-3Ab CbiX family protein YP_474395.1 939523 R 321327 CDS YP_474396.1 86605633 3898272 940421..941374 1 NC_007775.1 identified by match to protein family HMM PF06089; L-asparaginase, thermolabile 941374 3898272 CYA_0931 Synechococcus sp. JA-3-3Ab L-asparaginase, thermolabile YP_474396.1 940421 D 321327 CDS YP_474397.1 86605634 3898366 941582..942214 1 NC_007775.1 hypothetical protein 942214 3898366 CYA_0932 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474397.1 941582 D 321327 CDS YP_474398.1 86605635 3898367 943317..944390 1 NC_007775.1 hypothetical protein 944390 3898367 CYA_0933 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474398.1 943317 D 321327 CDS YP_474399.1 86605636 3898368 complement(944702..945376) 1 NC_007775.1 identified by similarity to PIR:AI2367; hypothetical protein 945376 3898368 CYA_0934 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474399.1 944702 R 321327 CDS YP_474400.1 86605637 3898369 complement(945552..946043) 1 NC_007775.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 946043 3898369 CYA_0935 Synechococcus sp. JA-3-3Ab nucleotide-binding protein YP_474400.1 945552 R 321327 CDS YP_474401.1 86605638 3898370 946162..947004 1 NC_007775.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase 947004 3898370 CYA_0936 Synechococcus sp. JA-3-3Ab short chain dehydrogenase/reductase family oxidoreductase YP_474401.1 946162 D 321327 CDS YP_474402.1 86605639 3898371 947117..947479 1 NC_007775.1 identified by match to protein family HMM PF00498; FHA domain-containing protein 947479 3898371 CYA_0938 Synechococcus sp. JA-3-3Ab FHA domain-containing protein YP_474402.1 947117 D 321327 CDS YP_474403.1 86605640 3898372 complement(947476..948816) 1 NC_007775.1 identified by match to protein family HMM PF01943; polysaccharide biosynthesis domain-containing protein 948816 3898372 CYA_0937 Synechococcus sp. JA-3-3Ab polysaccharide biosynthesis domain-containing protein YP_474403.1 947476 R 321327 CDS YP_474404.1 86605641 3898373 948786..950765 1 NC_007775.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 950765 3898373 CYA_0939 Synechococcus sp. JA-3-3Ab penicillin-binding protein YP_474404.1 948786 D 321327 CDS YP_474405.1 86605642 3898374 951098..951415 1 NC_007775.1 identified by similarity to SP:P05514; match to protein family HMM PF00216; DNA-binding protein HU 951415 hup-2 3898374 hup-2 Synechococcus sp. JA-3-3Ab DNA-binding protein HU YP_474405.1 951098 D 321327 CDS YP_474406.1 86605643 3898375 951486..952631 1 NC_007775.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 952631 cobD-2 3898375 cobD-2 Synechococcus sp. JA-3-3Ab threonine-phosphate decarboxylase YP_474406.1 951486 D 321327 CDS YP_474407.1 86605644 3898376 952658..953323 1 NC_007775.1 identified by similarity to PIR:AH2253; hypothetical protein 953323 3898376 CYA_0942 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474407.1 952658 D 321327 CDS YP_474408.1 86605645 3898377 953467..954468 1 NC_007775.1 hypothetical protein 954468 3898377 CYA_0943 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474408.1 953467 D 321327 CDS YP_474409.1 86605646 3898378 complement(954669..955745) 1 NC_007775.1 identified by match to protein family HMM TIGR01409; secreted protein 955745 3898378 CYA_0944 Synechococcus sp. JA-3-3Ab secreted protein YP_474409.1 954669 R 321327 CDS YP_474410.1 86605647 3898379 955764..956606 1 NC_007775.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase 956606 nadC 3898379 nadC Synechococcus sp. JA-3-3Ab nicotinate-nucleotide pyrophosphorylase YP_474410.1 955764 D 321327 CDS YP_474411.1 86605648 3898380 956763..957695 1 NC_007775.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 957695 nadA 3898380 nadA Synechococcus sp. JA-3-3Ab quinolinate synthetase YP_474411.1 956763 D 321327 CDS YP_474412.1 86605649 3898381 957733..959253 1 NC_007775.1 identified by similarity to SP:P10902; match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR00551; L-aspartate oxidase 959253 nadB 3898381 nadB Synechococcus sp. JA-3-3Ab L-aspartate oxidase YP_474412.1 957733 D 321327 CDS YP_474413.1 86605650 3898382 complement(959250..960659) 1 NC_007775.1 identified by match to protein family HMM PF00393; match to protein family HMM PF03446; match to protein family HMM TIGR00873; 6-phosphogluconate dehydrogenase 960659 gnd 3898382 gnd Synechococcus sp. JA-3-3Ab 6-phosphogluconate dehydrogenase YP_474413.1 959250 R 321327 CDS YP_474414.1 86605651 3898383 complement(960752..961249) 1 NC_007775.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 961249 3898383 CYA_0949 Synechococcus sp. JA-3-3Ab pentapeptide repeat-containing protein YP_474414.1 960752 R 321327 CDS YP_474415.1 86605652 3898384 961326..962519 1 NC_007775.1 identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299; hypothetical protein 962519 3898384 CYA_0950 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474415.1 961326 D 321327 CDS YP_474416.1 86605653 3898385 962731..964725 1 NC_007775.1 identified by match to protein family HMM PF00005; peroxisomal fatty acyl CoA ABC transporter transmembrane ATP-binding protein 964725 3898385 CYA_0951 Synechococcus sp. JA-3-3Ab peroxisomal fatty acyl CoA ABC transporter transmembrane ATP-binding protein YP_474416.1 962731 D 321327 CDS YP_474417.1 86605654 3898347 964842..966620 1 NC_007775.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 966620 sir 3898347 sir Synechococcus sp. JA-3-3Ab sulfite reductase subunit beta YP_474417.1 964842 D 321327 CDS YP_474418.1 86605655 3898348 966736..967527 1 NC_007775.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07721; hypothetical protein 967527 3898348 CYA_0953 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474418.1 966736 D 321327 CDS YP_474419.1 86605656 3898349 complement(967595..967939) 1 NC_007775.1 identified by match to protein family HMM PF01740; anti-anti-sigma factor family protein 967939 3898349 CYA_0954 Synechococcus sp. JA-3-3Ab anti-anti-sigma factor family protein YP_474419.1 967595 R 321327 CDS YP_474420.1 86605657 3898350 968098..969234 1 NC_007775.1 identified by match to protein family HMM PF00535; glycosyl transferase 969234 3898350 CYA_0955 Synechococcus sp. JA-3-3Ab glycosyl transferase YP_474420.1 968098 D 321327 CDS YP_474421.1 86605658 3898351 complement(969244..970194) 1 NC_007775.1 identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571; D12 class N6 adenine-specific DNA methyltransferase 970194 3898351 CYA_0956 Synechococcus sp. JA-3-3Ab D12 class N6 adenine-specific DNA methyltransferase YP_474421.1 969244 R 321327 CDS YP_474422.1 86605659 3898352 complement(970268..970444) 1 NC_007775.1 hypothetical protein 970444 3898352 CYA_0957 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474422.1 970268 R 321327 CDS YP_474423.1 86605660 3898353 complement(970713..970877) 1 NC_007775.1 hypothetical protein 970877 3898353 CYA_0958 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474423.1 970713 R 321327 CDS YP_474424.1 86605661 3898354 971755..972450 1 NC_007775.1 identified by match to protein family HMM PF00117; glutamine amidotransferase 972450 3898354 CYA_0959 Synechococcus sp. JA-3-3Ab glutamine amidotransferase YP_474424.1 971755 D 321327 CDS YP_474425.1 86605662 3898355 972527..973936 1 NC_007775.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 973936 murD 3898355 murD Synechococcus sp. JA-3-3Ab UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_474425.1 972527 D 321327 CDS YP_474426.1 86605663 3898356 973845..975005 1 NC_007775.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; cell division protein FtsW 975005 3898356 CYA_0961 Synechococcus sp. JA-3-3Ab cell division protein FtsW YP_474426.1 973845 D 321327 CDS YP_474427.1 86605664 3898357 complement(975020..975553) 1 NC_007775.1 hypothetical protein 975553 3898357 CYA_0962 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474427.1 975020 R 321327 CDS YP_474428.1 86605665 3898359 976929..977528 1 NC_007775.1 hypothetical protein 977528 3898359 CYA_0965 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474428.1 976929 D 321327 CDS YP_474429.1 86605666 3898360 complement(977468..978337) 1 NC_007775.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 978337 3898360 CYA_0964 Synechococcus sp. JA-3-3Ab alpha/beta fold family hydrolase YP_474429.1 977468 R 321327 CDS YP_474430.1 86605667 3898361 complement(978380..979045) 1 NC_007775.1 identified by match to protein family HMM PF00325; Crp/FNR family transcriptional regulator 979045 3898361 CYA_0966 Synechococcus sp. JA-3-3Ab Crp/FNR family transcriptional regulator YP_474430.1 978380 R 321327 CDS YP_474431.1 86605668 3898362 979418..980197 1 NC_007775.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 980197 surE 3898362 surE Synechococcus sp. JA-3-3Ab stationary phase survival protein SurE YP_474431.1 979418 D 321327 CDS YP_474432.1 86605669 3898363 complement(980254..980715) 1 NC_007775.1 identified by similarity to PIR:AE1929; match to protein family HMM PF04543; hypothetical protein 980715 3898363 CYA_0968 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474432.1 980254 R 321327 CDS YP_474433.1 86605670 3898364 complement(980722..981372) 1 NC_007775.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 981372 hisH 3898364 hisH Synechococcus sp. JA-3-3Ab imidazole glycerol phosphate synthase subunit HisH YP_474433.1 980722 R 321327 CDS YP_474434.1 86605671 3898328 complement(982540..983253) 1 NC_007775.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 983253 grpE 3898328 grpE Synechococcus sp. JA-3-3Ab heat shock protein GrpE YP_474434.1 982540 R 321327 CDS YP_474435.1 86605672 3898329 complement(983430..985091) 1 NC_007775.1 identified by similarity to SP:P26265; match to protein family HMM PF00149; match to protein family HMM PF02872; 2`,3`-cyclic-nucleotide 2`-phosphodiesterase 985091 3898329 CYA_0972 Synechococcus sp. JA-3-3Ab 2`,3`-cyclic-nucleotide 2`-phosphodiesterase YP_474435.1 983430 R 321327 CDS YP_474436.1 86605673 3898330 complement(985155..986375) 1 NC_007775.1 identified by match to protein family HMM PF04286; hypothetical protein 986375 3898330 CYA_0973 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474436.1 985155 R 321327 CDS YP_474437.1 86605674 3898331 complement(986439..987371) 1 NC_007775.1 hypothetical protein 987371 3898331 CYA_0974 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474437.1 986439 R 321327 CDS YP_474438.1 86605675 3898332 complement(987514..989007) 1 NC_007775.1 identified by match to protein family HMM PF00395; S-layer protein 989007 3898332 CYA_0975 Synechococcus sp. JA-3-3Ab S-layer protein YP_474438.1 987514 R 321327 CDS YP_474439.1 86605676 3898333 complement(989224..990264) 1 NC_007775.1 identified by similarity to SP:Q46933; match to protein family HMM PF00248; aldo/keto reductase Tas 990264 tas 3898333 tas Synechococcus sp. JA-3-3Ab aldo/keto reductase Tas YP_474439.1 989224 R 321327 CDS YP_474440.1 86605677 3898334 complement(990346..992028) 1 NC_007775.1 hypothetical protein 992028 3898334 CYA_0977 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474440.1 990346 R 321327 CDS YP_474441.1 86605678 3898335 992523..993647 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF07228; response regulator 993647 3898335 CYA_0978 Synechococcus sp. JA-3-3Ab response regulator YP_474441.1 992523 D 321327 CDS YP_474442.1 86605679 3898336 complement(993659..993928) 1 NC_007775.1 identified by match to protein family HMM PF01722; BolA/YrbA family protein 993928 3898336 CYA_0979 Synechococcus sp. JA-3-3Ab BolA/YrbA family protein YP_474442.1 993659 R 321327 CDS YP_474443.1 86605680 3898338 complement(994257..995468) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase 995468 3898338 CYA_0981 Synechococcus sp. JA-3-3Ab ISSoc1, transposase YP_474443.1 994257 R 321327 CDS YP_474444.1 86605681 3898339 complement(995539..996033) 1 NC_007775.1 hypothetical protein 996033 3898339 CYA_0982 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474444.1 995539 R 321327 CDS YP_474445.1 86605682 3898340 complement(996509..997660) 1 NC_007775.1 identified by match to protein family HMM PF00144; carboxylesterase 997660 3898340 CYA_0983 Synechococcus sp. JA-3-3Ab carboxylesterase YP_474445.1 996509 R 321327 CDS YP_474446.1 86605683 3898341 997798..998757 1 NC_007775.1 identified by similarity to SP:P52693; match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 998757 3898341 CYA_0984 Synechococcus sp. JA-3-3Ab LysR family transcriptional regulator YP_474446.1 997798 D 321327 CDS YP_474447.1 86605684 3898342 998871..999911 1 NC_007775.1 identified by match to protein family HMM PF02885; hypothetical protein 999911 3898342 CYA_0985 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474447.1 998871 D 321327 CDS YP_474448.1 86605685 3898343 complement(1000284..1001570) 1 NC_007775.1 identified by match to protein family HMM PF07498; Rho termination factor domain-containing protein 1001570 3898343 CYA_0986 Synechococcus sp. JA-3-3Ab Rho termination factor domain-containing protein YP_474448.1 1000284 R 321327 CDS YP_474449.1 86605686 3898344 complement(1001623..1001730) 1 NC_007775.1 hypothetical protein 1001730 3898344 CYA_0987 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474449.1 1001623 R 321327 CDS YP_474450.1 86605687 3898345 1001745..1002821 1 NC_007775.1 hypothetical protein 1002821 3898345 CYA_0989 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474450.1 1001745 D 321327 CDS YP_474451.1 86605688 3898346 complement(1001774..1002013) 1 NC_007775.1 hypothetical protein 1002013 3898346 CYA_0988 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474451.1 1001774 R 321327 CDS YP_474452.1 86605689 3898309 1002934..1004052 1 NC_007775.1 identified by match to protein family HMM PF01075; heptosyltransferase family protein 1004052 3898309 CYA_0990 Synechococcus sp. JA-3-3Ab heptosyltransferase family protein YP_474452.1 1002934 D 321327 CDS YP_474453.1 86605690 3898310 1004332..1005240 1 NC_007775.1 identified by match to protein family HMM PF00892; hypothetical protein 1005240 3898310 CYA_0991 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474453.1 1004332 D 321327 CDS YP_474454.1 86605691 3898311 complement(1005261..1006382) 1 NC_007775.1 identified by match to protein family HMM PF00465; iron-containing alcohol dehydrogenase 1006382 3898311 CYA_0992 Synechococcus sp. JA-3-3Ab iron-containing alcohol dehydrogenase YP_474454.1 1005261 R 321327 CDS YP_474455.1 86605692 3898312 1006632..1007750 1 NC_007775.1 identified by similarity to OMNI:NTL03PA05045; match to protein family HMM TIGR01175; type 4 fimbrial biogenesis protein PilM 1007750 pilM 3898312 pilM Synechococcus sp. JA-3-3Ab type 4 fimbrial biogenesis protein PilM YP_474455.1 1006632 D 321327 CDS YP_474456.1 86605693 3898313 1007814..1008518 1 NC_007775.1 identified by match to protein family HMM PF05137; type 4 fimbrial biogenesis protein PilN 1008518 pilN 3898313 pilN Synechococcus sp. JA-3-3Ab type 4 fimbrial biogenesis protein PilN YP_474456.1 1007814 D 321327 CDS YP_474457.1 86605694 3898314 1008518..1009240 1 NC_007775.1 hypothetical protein 1009240 3898314 CYA_0995 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474457.1 1008518 D 321327 CDS YP_474458.1 86605695 3898315 1009528..1011699 1 NC_007775.1 identified by match to protein family HMM PF00263; match to protein family HMM PF07660; type IV pilus secretin PilQ 1011699 3898315 CYA_0996 Synechococcus sp. JA-3-3Ab type IV pilus secretin PilQ YP_474458.1 1009528 D 321327 CDS YP_474459.1 86605696 3898316 1011746..1012510 1 NC_007775.1 hypothetical protein 1012510 3898316 CYA_0997 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474459.1 1011746 D 321327 CDS YP_474460.1 86605697 3898317 complement(1012515..1013081) 1 NC_007775.1 identified by similarity to GB:AAC97587.1; ISSoc4, transposase orfB 1013081 3898317 CYA_0998 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfB YP_474460.1 1012515 R 321327 CDS YP_474461.1 86605698 3898318 complement(1013063..1013461) 1 NC_007775.1 identified by similarity to PIR:AD2038; ISSoc4, transposase orfA 1013461 3898318 CYA_0999 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfA YP_474461.1 1013063 R 321327 CDS YP_474462.1 86605699 3898319 1013568..1013966 1 NC_007775.1 hypothetical protein 1013966 3898319 CYA_1000 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474462.1 1013568 D 321327 CDS YP_474463.1 86605700 3898320 complement(1014352..1014918) 1 NC_007775.1 identified by similarity to PIR:AE2255; hypothetical protein 1014918 3898320 CYA_1001 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474463.1 1014352 R 321327 CDS YP_474464.1 86605701 3898321 1015046..1016581 1 NC_007775.1 identified by match to protein family HMM PF00155; match to protein family HMM PF01041; match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711; Orn/Lys/Arg decarboxylase 1016581 3898321 CYA_1002 Synechococcus sp. JA-3-3Ab Orn/Lys/Arg decarboxylase YP_474464.1 1015046 D 321327 CDS YP_474465.1 86605702 3898322 complement(1016586..1018019) 1 NC_007775.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; HlyC/CorC (HCC) family transporter 1018019 3898322 CYA_1003 Synechococcus sp. JA-3-3Ab HlyC/CorC (HCC) family transporter YP_474465.1 1016586 R 321327 CDS YP_474466.1 86605703 3898323 complement(1018222..1018578) 1 NC_007775.1 identified by match to protein family HMM PF03413; peptidase propeptide/YPEB domain-containing protein 1018578 3898323 CYA_1004 Synechococcus sp. JA-3-3Ab peptidase propeptide/YPEB domain-containing protein YP_474466.1 1018222 R 321327 CDS YP_474467.1 86605704 3898324 1018844..1019764 1 NC_007775.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1019764 ilvE 3898324 ilvE Synechococcus sp. JA-3-3Ab branched-chain amino acid aminotransferase YP_474467.1 1018844 D 321327 CDS YP_474468.1 86605705 3898325 1019842..1020354 1 NC_007775.1 identified by similarity to PDB:1HGX_A; match to protein family HMM PF00156; purine phosphoribosyltransferase 1020354 3898325 CYA_1006 Synechococcus sp. JA-3-3Ab purine phosphoribosyltransferase YP_474468.1 1019842 D 321327 CDS YP_474469.1 86605706 3898326 complement(1020398..1024249) 1 NC_007775.1 identified by match to protein family HMM TIGR01444; FkbM family methyltransferase 1024249 3898326 CYA_1007 Synechococcus sp. JA-3-3Ab FkbM family methyltransferase YP_474469.1 1020398 R 321327 CDS YP_474470.1 86605707 3898327 complement(1025028..1025978) 1 NC_007775.1 hypothetical protein 1025978 3898327 CYA_1008 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474470.1 1025028 R 321327 CDS YP_474471.1 86605708 3898292 complement(1025994..1026683) 1 NC_007775.1 identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase 1026683 3898292 CYA_1009 Synechococcus sp. JA-3-3Ab 2OG-Fe(II) oxygenase YP_474471.1 1025994 R 321327 CDS YP_474472.1 86605709 3898293 complement(1027337..1027531) 1 NC_007775.1 hypothetical protein 1027531 3898293 CYA_1010 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474472.1 1027337 R 321327 CDS YP_474473.1 86605710 3898294 1027704..1029731 1 NC_007775.1 identified by match to protein family HMM TIGR01444; FkbM family methyltransferase 1029731 3898294 CYA_1011 Synechococcus sp. JA-3-3Ab FkbM family methyltransferase YP_474473.1 1027704 D 321327 CDS YP_474474.1 86605711 3898295 1029768..1032461 1 NC_007775.1 macrocin-O-methyltransferase domain-containing protein 1032461 3898295 CYA_1012 Synechococcus sp. JA-3-3Ab macrocin-O-methyltransferase domain-containing protein YP_474474.1 1029768 D 321327 CDS YP_474475.1 86605712 3898296 complement(1032528..1033253) 1 NC_007775.1 identified by similarity to PIR:AH2105; match to protein family HMM PF05685; hypothetical protein 1033253 3898296 CYA_1013 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474475.1 1032528 R 321327 CDS YP_474476.1 86605713 3898298 complement(1034023..1035054) 1 NC_007775.1 identified by match to protein family HMM PF00132; match to protein family HMM PF04613; match to protein family HMM TIGR01853; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1035054 lpxD 3898298 lpxD Synechococcus sp. JA-3-3Ab UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_474476.1 1034023 R 321327 CDS YP_474477.1 86605714 3898299 complement(1035070..1035588) 1 NC_007775.1 identified by similarity to GB:BAC08280.1; hypothetical protein 1035588 3898299 CYA_1016 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474477.1 1035070 R 321327 CDS YP_474478.1 86605715 3898302 1036398..1037417 1 NC_007775.1 hypothetical protein 1037417 3898302 CYA_1019 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474478.1 1036398 D 321327 CDS YP_474479.1 86605716 3898303 1037440..1038135 1 NC_007775.1 hypothetical protein 1038135 3898303 CYA_1020 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474479.1 1037440 D 321327 CDS YP_474480.1 86605717 3898304 1038333..1041368 1 NC_007775.1 hypothetical protein 1041368 3898304 CYA_1021 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474480.1 1038333 D 321327 CDS YP_474481.1 86605718 3898305 1041547..1042437 1 NC_007775.1 identified by match to protein family HMM PF00560; hypothetical protein 1042437 3898305 CYA_1022 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474481.1 1041547 D 321327 CDS YP_474482.1 86605719 3898306 1042530..1042799 1 NC_007775.1 identified by similarity to GB:BAD80637.1; hypothetical protein 1042799 3898306 CYA_1023 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474482.1 1042530 D 321327 CDS YP_474483.1 86605720 3898307 1042833..1043561 1 NC_007775.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1043561 3898307 CYA_1024 Synechococcus sp. JA-3-3Ab ABC transporter ATP-binding protein YP_474483.1 1042833 D 321327 CDS YP_474484.1 86605721 3898308 1043739..1043951 1 NC_007775.1 identified by match to protein family HMM PF02672; CP12 domain-containing protein 1043951 3898308 CYA_1025 Synechococcus sp. JA-3-3Ab CP12 domain-containing protein YP_474484.1 1043739 D 321327 CDS YP_474485.1 86605722 3898273 complement(1044010..1044813) 1 NC_007775.1 identified by similarity to GB:CAC28871.1; match to protein family HMM PF03239; iron permease 1044813 3898273 CYA_1026 Synechococcus sp. JA-3-3Ab iron permease YP_474485.1 1044010 R 321327 CDS YP_474486.1 86605723 3898274 complement(1044863..1045273) 1 NC_007775.1 identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357; methionine-R-sulfoxide reductase 1045273 msrB 3898274 msrB Synechococcus sp. JA-3-3Ab methionine-R-sulfoxide reductase YP_474486.1 1044863 R 321327 CDS YP_474487.1 86605724 3898275 1045718..1046161 1 NC_007775.1 identified by similarity to GB:BAC08682.1; hypothetical protein 1046161 3898275 CYA_1028 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474487.1 1045718 D 321327 CDS YP_474488.1 86605725 3898276 1046250..1047260 1 NC_007775.1 identified by match to protein family HMM PF00037; 4Fe-4S ferredoxin 1047260 3898276 CYA_1029 Synechococcus sp. JA-3-3Ab 4Fe-4S ferredoxin YP_474488.1 1046250 D 321327 CDS YP_474489.1 86605726 3898277 1047276..1049177 1 NC_007775.1 identified by match to protein family HMM PF01424; R3H domain-containing protein 1049177 3898277 CYA_1030 Synechococcus sp. JA-3-3Ab R3H domain-containing protein YP_474489.1 1047276 D 321327 CDS YP_474490.1 86605727 3898278 complement(1049194..1050096) 1 NC_007775.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; 4-hydroxybenzoate polyprenyltransferase 1050096 ubiA 3898278 ubiA Synechococcus sp. JA-3-3Ab 4-hydroxybenzoate polyprenyltransferase YP_474490.1 1049194 R 321327 CDS YP_474491.1 86605728 3898279 1050354..1051103 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1051103 3898279 CYA_1033 Synechococcus sp. JA-3-3Ab DNA-binding response regulator YP_474491.1 1050354 D 321327 CDS YP_474492.1 86605729 3898280 complement(1051100..1052437) 1 NC_007775.1 identified by match to protein family HMM PF01743; polyA polymerase family protein 1052437 3898280 CYA_1032 Synechococcus sp. JA-3-3Ab polyA polymerase family protein YP_474492.1 1051100 R 321327 CDS YP_474493.1 86605730 3898281 complement(1052607..1053632) 1 NC_007775.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1053632 hemH 3898281 hemH Synechococcus sp. JA-3-3Ab ferrochelatase YP_474493.1 1052607 R 321327 CDS YP_474494.1 86605731 3898283 complement(1055040..1055432) 1 NC_007775.1 hypothetical protein 1055432 3898283 CYA_1035 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474494.1 1055040 R 321327 CDS YP_474495.1 86605732 3898284 1055745..1056233 1 NC_007775.1 identified by similarity to PIR:AD2406; hypothetical protein 1056233 3898284 CYA_1037 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474495.1 1055745 D 321327 CDS YP_474496.1 86605733 3898285 1056280..1058187 1 NC_007775.1 hypothetical protein 1058187 3898285 CYA_1038 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474496.1 1056280 D 321327 CDS YP_474497.1 86605734 3898286 1058181..1059176 1 NC_007775.1 identified by match to protein family HMM PF04168; hypothetical protein 1059176 3898286 CYA_1039 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474497.1 1058181 D 321327 CDS YP_474498.1 86605735 3898287 1059442..1059936 1 NC_007775.1 identified by match to protein family HMM PF00132; hexapaptide repeat-containing transferase 1059936 3898287 CYA_1040 Synechococcus sp. JA-3-3Ab hexapaptide repeat-containing transferase YP_474498.1 1059442 D 321327 CDS YP_474499.1 86605736 3898288 complement(1060292..1061749) 1 NC_007775.1 identified by match to protein family HMM PF04169; match to protein family HMM PF04174; hypothetical protein 1061749 3898288 CYA_1041 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474499.1 1060292 R 321327 CDS YP_474500.1 86605737 3898289 complement(1061915..1063738) 1 NC_007775.1 hypothetical protein 1063738 3898289 CYA_1042 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474500.1 1061915 R 321327 CDS YP_474501.1 86605738 3898290 complement(1063841..1064101) 1 NC_007775.1 identified by similarity to PIR:AB2345; hypothetical protein 1064101 3898290 CYA_1043 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474501.1 1063841 R 321327 CDS YP_474502.1 86605739 3898291 complement(1064207..1065829) 1 NC_007775.1 identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976; S15 family X-Pro dipeptidyl-peptidase 1065829 3898291 CYA_1044 Synechococcus sp. JA-3-3Ab S15 family X-Pro dipeptidyl-peptidase YP_474502.1 1064207 R 321327 CDS YP_474503.1 86605740 3898509 complement(1066041..1066232) 1 NC_007775.1 hypothetical protein 1066232 3898509 CYA_1045 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474503.1 1066041 R 321327 CDS YP_474504.1 86605741 3898510 1066355..1066525 1 NC_007775.1 hypothetical protein 1066525 3898510 CYA_1046 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474504.1 1066355 D 321327 CDS YP_474505.1 86605742 3898511 1066528..1067049 1 NC_007775.1 identified by match to protein family HMM PF00583; acetyltransferase 1067049 3898511 CYA_1047 Synechococcus sp. JA-3-3Ab acetyltransferase YP_474505.1 1066528 D 321327 CDS YP_474506.1 86605743 3898512 1067117..1067407 1 NC_007775.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 1067407 phhB 3898512 phhB Synechococcus sp. JA-3-3Ab pterin-4-alpha-carbinolamine dehydratase YP_474506.1 1067117 D 321327 CDS YP_474507.1 86605744 3898513 1067688..1068644 1 NC_007775.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein 1068644 3898513 CYA_1049 Synechococcus sp. JA-3-3Ab NAD-dependent epimerase/dehydratase family protein YP_474507.1 1067688 D 321327 CDS YP_474508.1 86605745 3898514 1068748..1069734 1 NC_007775.1 identified by similarity to GB:AAC36155.1; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1069734 3898514 CYA_1050 Synechococcus sp. JA-3-3Ab ABC transporter ATP-binding protein YP_474508.1 1068748 D 321327 CDS YP_474509.1 86605746 3898515 complement(1069764..1070897) 1 NC_007775.1 identified by match to protein family HMM PF00534; group 1 glycosyl transferase 1070897 3898515 CYA_1051 Synechococcus sp. JA-3-3Ab group 1 glycosyl transferase YP_474509.1 1069764 R 321327 CDS YP_474510.1 86605747 3898516 complement(1070999..1071130) 1 NC_007775.1 hypothetical protein 1071130 3898516 CYA_1052 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474510.1 1070999 R 321327 CDS YP_474511.1 86605748 3898517 complement(1071255..1071986) 1 NC_007775.1 identified by similarity to PIR:AF2006; hypothetical protein 1071986 3898517 CYA_1053 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474511.1 1071255 R 321327 CDS YP_474512.1 86605749 3898518 complement(1071983..1072150) 1 NC_007775.1 hypothetical protein 1072150 3898518 CYA_1054 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474512.1 1071983 R 321327 CDS YP_474513.1 86605750 3898519 1072187..1072819 1 NC_007775.1 identified by match to protein family HMM PF01209; UbiE/COQ5 family methlytransferase 1072819 3898519 CYA_1055 Synechococcus sp. JA-3-3Ab UbiE/COQ5 family methlytransferase YP_474513.1 1072187 D 321327 CDS YP_474514.1 86605751 3898520 complement(1072832..1073605) 1 NC_007775.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 1073605 thiG 3898520 thiG Synechococcus sp. JA-3-3Ab thiazole synthase YP_474514.1 1072832 R 321327 CDS YP_474515.1 86605752 3898521 complement(1073705..1073902) 1 NC_007775.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS 1073902 thiS 3898521 thiS Synechococcus sp. JA-3-3Ab thiamine biosynthesis protein ThiS YP_474515.1 1073705 R 321327 CDS YP_474516.1 86605753 3898522 complement(1073890..1075026) 1 NC_007775.1 identified by match to protein family HMM PF01266; match to protein family HMM TIGR02352; glycine oxidase ThiO 1075026 thiO 3898522 thiO Synechococcus sp. JA-3-3Ab glycine oxidase ThiO YP_474516.1 1073890 R 321327 CDS YP_474517.1 86605754 3898523 complement(1075232..1077295) 1 NC_007775.1 identified by similarity to GB:AAA27331.1; match to protein family HMM PF00149; match to protein family HMM PF02872; 5'-nucleotidase 1077295 3898523 CYA_1059 Synechococcus sp. JA-3-3Ab 5'-nucleotidase YP_474517.1 1075232 R 321327 CDS YP_474518.1 86605755 3898524 complement(1077377..1077709) 1 NC_007775.1 identified by match to protein family HMM PF01035; methylated-DNA-[protein]-cysteine S-methyltransferase 1077709 3898524 CYA_1060 Synechococcus sp. JA-3-3Ab methylated-DNA-[protein]-cysteine S-methyltransferase YP_474518.1 1077377 R 321327 CDS YP_474519.1 86605756 3898525 1077738..1078295 1 NC_007775.1 hypothetical protein 1078295 3898525 CYA_1061 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474519.1 1077738 D 321327 CDS YP_474520.1 86605757 3898526 1078417..1079034 1 NC_007775.1 identified by similarity to SP:P27650; match to protein family HMM PF04955; HupE/UreJ family protein 1079034 3898526 CYA_1062 Synechococcus sp. JA-3-3Ab HupE/UreJ family protein YP_474520.1 1078417 D 321327 CDS YP_474521.1 86605758 3898527 1079109..1079558 1 NC_007775.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1079558 ndk 3898527 ndk Synechococcus sp. JA-3-3Ab nucleoside diphosphate kinase YP_474521.1 1079109 D 321327 CDS YP_474522.1 86605759 3898452 complement(1079821..1081194) 1 NC_007775.1 identified by match to protein family HMM PF00005; taurine ABC transporter ATP-binding protein 1081194 3898452 CYA_1064 Synechococcus sp. JA-3-3Ab taurine ABC transporter ATP-binding protein YP_474522.1 1079821 R 321327 CDS YP_474523.1 86605760 3898453 complement(1081213..1082940) 1 NC_007775.1 identified by match to protein family HMM PF00528; taurine ABC transporter permease 1082940 3898453 CYA_1065 Synechococcus sp. JA-3-3Ab taurine ABC transporter permease YP_474523.1 1081213 R 321327 CDS YP_474524.1 86605761 3898454 complement(1083027..1083311) 1 NC_007775.1 identified by similarity to PIR:AD2089; hypothetical protein 1083311 3898454 CYA_1066 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474524.1 1083027 R 321327 CDS YP_474525.1 86605762 3898455 complement(1083395..1084351) 1 NC_007775.1 hypothetical protein 1084351 3898455 CYA_1067 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474525.1 1083395 R 321327 CDS YP_474526.1 86605763 3898456 complement(1084726..1086174) 1 NC_007775.1 identified by similarity to GB:AAC60447.2; match to protein family HMM PF03055; lignostilbene-alpha,beta-dioxygenase 1086174 3898456 CYA_1068 Synechococcus sp. JA-3-3Ab lignostilbene-alpha,beta-dioxygenase YP_474526.1 1084726 R 321327 CDS YP_474527.1 86605764 3898457 1086341..1087792 1 NC_007775.1 identified by similarity to SP:P37105; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 1087792 ffh 3898457 ffh Synechococcus sp. JA-3-3Ab signal recognition particle protein YP_474527.1 1086341 D 321327 CDS YP_474528.1 86605765 3898458 1087802..1088257 1 NC_007775.1 identified by match to protein family HMM PF00588; RNA methyltransferase 1088257 3898458 CYA_1071 Synechococcus sp. JA-3-3Ab RNA methyltransferase YP_474528.1 1087802 D 321327 CDS YP_474529.1 86605766 3898459 complement(1088233..1088388) 1 NC_007775.1 hypothetical protein 1088388 3898459 CYA_1070 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474529.1 1088233 R 321327 CDS YP_474530.1 86605767 3898460 1088473..1090218 1 NC_007775.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 1090218 3898460 CYA_1072 Synechococcus sp. JA-3-3Ab penicillin-binding protein YP_474530.1 1088473 D 321327 CDS YP_474531.1 86605768 3898461 complement(1090358..1091581) 1 NC_007775.1 identified by match to protein family HMM PF00535; match to protein family HMM PF04138; glycosyl transferase 1091581 3898461 CYA_1073 Synechococcus sp. JA-3-3Ab glycosyl transferase YP_474531.1 1090358 R 321327 CDS YP_474532.1 86605769 3898462 complement(1091762..1094227) 1 NC_007775.1 identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277; HDIG domain-containing protein 1094227 3898462 CYA_1074 Synechococcus sp. JA-3-3Ab HDIG domain-containing protein YP_474532.1 1091762 R 321327 CDS YP_474533.1 86605770 3898463 complement(1094296..1094745) 1 NC_007775.1 identified by similarity to GB:BAD79760.1; hypothetical protein 1094745 3898463 CYA_1075 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474533.1 1094296 R 321327 CDS YP_474534.1 86605771 3898464 complement(1094789..1095538) 1 NC_007775.1 identified by similarity to SP:P39144; match to protein family HMM PF01648; 4'-phosphopantetheinyl transferase 1095538 3898464 CYA_1076 Synechococcus sp. JA-3-3Ab 4'-phosphopantetheinyl transferase YP_474534.1 1094789 R 321327 CDS YP_474535.1 86605772 3898465 1095621..1096982 1 NC_007775.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; cell envelope-related function transcriptional attenuator 1096982 3898465 CYA_1077 Synechococcus sp. JA-3-3Ab cell envelope-related function transcriptional attenuator YP_474535.1 1095621 D 321327 CDS YP_474536.1 86605773 3898466 1097087..1098946 1 NC_007775.1 molecular chaperone; heat shock protein 90 1098946 htpG 3898466 htpG Synechococcus sp. JA-3-3Ab heat shock protein 90 YP_474536.1 1097087 D 321327 CDS YP_474537.1 86605774 3898467 complement(1098940..1099530) 1 NC_007775.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1099530 ribH 3898467 ribH Synechococcus sp. JA-3-3Ab 6,7-dimethyl-8-ribityllumazine synthase YP_474537.1 1098940 R 321327 CDS YP_474538.1 86605775 3898468 1099814..1100842 1 NC_007775.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1100842 3898468 CYA_1081 Synechococcus sp. JA-3-3Ab LysR family transcriptional regulator YP_474538.1 1099814 D 321327 CDS YP_474539.1 86605776 3898469 complement(1100724..1103042) 1 NC_007775.1 identified by match to protein family HMM PF07719; hypothetical protein 1103042 3898469 CYA_1080 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474539.1 1100724 R 321327 CDS YP_474540.1 86605777 3898470 1103204..1104745 1 NC_007775.1 identified by match to protein family HMM PF04244; deoxyribodipyrimidine photolyase family protein 1104745 3898470 CYA_1082 Synechococcus sp. JA-3-3Ab deoxyribodipyrimidine photolyase family protein YP_474540.1 1103204 D 321327 CDS YP_474541.1 86605778 3898471 1104814..1105416 1 NC_007775.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 1105416 nrdR 3898471 nrdR Synechococcus sp. JA-3-3Ab transcriptional regulator NrdR YP_474541.1 1104814 D 321327 CDS YP_474542.1 86605779 3898438 1105629..1106477 1 NC_007775.1 hypothetical protein 1106477 3898438 CYA_1084 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474542.1 1105629 D 321327 CDS YP_474543.1 86605780 3898444 complement(1111862..1112482) 1 NC_007775.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 1112482 3898444 CYA_1090 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474543.1 1111862 R 321327 CDS YP_474544.1 86605781 3898445 complement(1112486..1113340) 1 NC_007775.1 identified by similarity to SP:O34752; match to protein family HMM PF01790; match to protein family HMM TIGR00544; prolipoprotein diacylglyceryl transferase 1113340 lgt-1 3898445 lgt-1 Synechococcus sp. JA-3-3Ab prolipoprotein diacylglyceryl transferase YP_474544.1 1112486 R 321327 CDS YP_474545.1 86605782 3898446 1113642..1114718 1 NC_007775.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1114718 recA 3898446 recA Synechococcus sp. JA-3-3Ab recombinase A YP_474545.1 1113642 D 321327 CDS YP_474546.1 86605783 3898447 complement(1114734..1115546) 1 NC_007775.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; RNA methyltransferase 1115546 3898447 CYA_1093 Synechococcus sp. JA-3-3Ab RNA methyltransferase YP_474546.1 1114734 R 321327 CDS YP_474547.1 86605784 3898448 complement(1115580..1116926) 1 NC_007775.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; ribosomal RNA small subunit methyltransferase B 1116926 sun 3898448 sun Synechococcus sp. JA-3-3Ab ribosomal RNA small subunit methyltransferase B YP_474547.1 1115580 R 321327 CDS YP_474548.1 86605785 3898450 complement(1118160..1118549) 1 NC_007775.1 hypothetical protein 1118549 3898450 CYA_1095 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474548.1 1118160 R 321327 CDS YP_474549.1 86605786 3898451 complement(1118585..1121986) 1 NC_007775.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456; match to protein family HMM TIGR02457; trehalose synthase/ maltokinase 1121986 3898451 CYA_1097 Synechococcus sp. JA-3-3Ab trehalose synthase/ maltokinase YP_474549.1 1118585 R 321327 CDS YP_474550.1 86605787 3898424 complement(1122234..1123547) 1 NC_007775.1 hypothetical protein 1123547 3898424 CYA_1098 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474550.1 1122234 R 321327 CDS YP_474551.1 86605788 3898425 complement(1123531..1124484) 1 NC_007775.1 identified by match to protein family HMM PF01242; 6-pyruvoyl-tetrahydropterin synthase 1124484 3898425 CYA_1099 Synechococcus sp. JA-3-3Ab 6-pyruvoyl-tetrahydropterin synthase YP_474551.1 1123531 R 321327 CDS YP_474552.1 86605789 3898426 1124636..1125982 1 NC_007775.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1125982 hom 3898426 hom Synechococcus sp. JA-3-3Ab homoserine dehydrogenase YP_474552.1 1124636 D 321327 CDS YP_474553.1 86605790 3898427 1126034..1127491 1 NC_007775.1 identified by match to protein family HMM PF01593; match to protein family HMM TIGR00562; protoporphyrinogen oxidase 1127491 hemG 3898427 hemG Synechococcus sp. JA-3-3Ab protoporphyrinogen oxidase YP_474553.1 1126034 D 321327 CDS YP_474554.1 86605791 3898428 1127421..1128536 1 NC_007775.1 identified by similarity to PIR:AH1904; hypothetical protein 1128536 3898428 CYA_1103 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474554.1 1127421 D 321327 CDS YP_474555.1 86605792 3898429 complement(1128533..1128991) 1 NC_007775.1 identified by match to protein family HMM PF01124; MAPEG family protein 1128991 3898429 CYA_1102 Synechococcus sp. JA-3-3Ab MAPEG family protein YP_474555.1 1128533 R 321327 CDS YP_474556.1 86605793 3898430 complement(1129063..1131117) 1 NC_007775.1 identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345; arsenite-antimonite ArsAB efflux family transporter ATP-binding protein ArsAB 1131117 3898430 CYA_1104 Synechococcus sp. JA-3-3Ab arsenite-antimonite ArsAB efflux family transporter ATP-binding protein ArsAB YP_474556.1 1129063 R 321327 CDS YP_474557.1 86605794 3898431 complement(1131148..1131801) 1 NC_007775.1 hypothetical protein 1131801 3898431 CYA_1105 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474557.1 1131148 R 321327 CDS YP_474558.1 86605795 3898432 complement(1131805..1132674) 1 NC_007775.1 identified by similarity to SP:P07324; iron-sulfur cluster-binding protein 1132674 3898432 CYA_1106 Synechococcus sp. JA-3-3Ab iron-sulfur cluster-binding protein YP_474558.1 1131805 R 321327 CDS YP_474559.1 86605796 3898433 complement(1132684..1133100) 1 NC_007775.1 identified by similarity to SP:P07324; match to protein family HMM PF07845; iron-sulfur cluster-binding protein 1133100 3898433 CYA_1107 Synechococcus sp. JA-3-3Ab iron-sulfur cluster-binding protein YP_474559.1 1132684 R 321327 CDS YP_474560.1 86605797 3898434 complement(1133198..1135141) 1 NC_007775.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein 1135141 3898434 CYA_1108 Synechococcus sp. JA-3-3Ab outer membrane receptor (OMR) family protein YP_474560.1 1133198 R 321327 CDS YP_474561.1 86605798 3898435 complement(1135414..1137369) 1 NC_007775.1 identified by match to protein family HMM PF07602; hypothetical protein 1137369 3898435 CYA_1109 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474561.1 1135414 R 321327 CDS YP_474562.1 86605799 3898436 1137368..1138585 1 NC_007775.1 identified by similarity to GB:BAC08389.1; match to protein family HMM PF00805; pentapeptide repeat-containing protein 1138585 3898436 CYA_1110 Synechococcus sp. JA-3-3Ab pentapeptide repeat-containing protein YP_474562.1 1137368 D 321327 CDS YP_474563.1 86605800 3898437 1138774..1139904 1 NC_007775.1 identified by match to protein family HMM PF03739; YjgP/YjgQ family protein 1139904 3898437 CYA_1111 Synechococcus sp. JA-3-3Ab YjgP/YjgQ family protein YP_474563.1 1138774 D 321327 CDS YP_474564.1 86605801 3898386 1140938..1142029 1 NC_007775.1 identified by match to protein family HMM PF01262; match to protein family HMM PF02826; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase 1142029 ald 3898386 ald Synechococcus sp. JA-3-3Ab alanine dehydrogenase YP_474564.1 1140938 D 321327 CDS YP_474565.1 86605802 3898387 complement(1142039..1142671) 1 NC_007775.1 identified by match to protein family HMM PF01612; 3'-5' exonuclease 1142671 3898387 CYA_1113 Synechococcus sp. JA-3-3Ab 3'-5' exonuclease YP_474565.1 1142039 R 321327 CDS YP_474566.1 86605803 3898388 complement(1142911..1143216) 1 NC_007775.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 1143216 rpsN 3898388 rpsN Synechococcus sp. JA-3-3Ab 30S ribosomal protein S14 YP_474566.1 1142911 R 321327 CDS YP_474567.1 86605804 3898389 1143110..1143379 1 NC_007775.1 hypothetical protein 1143379 3898389 CYA_1115 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474567.1 1143110 D 321327 CDS YP_474568.1 86605805 3898390 1143361..1143684 1 NC_007775.1 hypothetical protein 1143684 3898390 CYA_1117 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474568.1 1143361 D 321327 CDS YP_474569.1 86605806 3898391 complement(1143681..1145201) 1 NC_007775.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; GTP-binding protein 1145201 3898391 CYA_1116 Synechococcus sp. JA-3-3Ab GTP-binding protein YP_474569.1 1143681 R 321327 CDS YP_474570.1 86605807 3898392 complement(1145282..1145773) 1 NC_007775.1 hypothetical protein 1145773 3898392 CYA_1118 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474570.1 1145282 R 321327 CDS YP_474571.1 86605808 3898393 1146148..1146600 1 NC_007775.1 hypothetical protein 1146600 3898393 CYA_1119 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474571.1 1146148 D 321327 CDS YP_474572.1 86605809 3898394 complement(1146623..1148851) 1 NC_007775.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 1148851 recJ-1 3898394 recJ-1 Synechococcus sp. JA-3-3Ab single-stranded-DNA-specific exonuclease RecJ YP_474572.1 1146623 R 321327 CDS YP_474573.1 86605810 3898395 complement(1148888..1148995) 1 NC_007775.1 hypothetical protein 1148995 3898395 CYA_1121 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474573.1 1148888 R 321327 CDS YP_474574.1 86605811 3898396 1149396..1150319 1 NC_007775.1 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 1150319 3898396 CYA_1122 Synechococcus sp. JA-3-3Ab Ser/Thr protein phosphatase family protein YP_474574.1 1149396 D 321327 CDS YP_474575.1 86605812 3898397 1150395..1151141 1 NC_007775.1 identified by match to protein family HMM PF01507; match to protein family HMM TIGR00434; phosophoadenylyl-sulfate reductase 1151141 cysH 3898397 cysH Synechococcus sp. JA-3-3Ab phosophoadenylyl-sulfate reductase YP_474575.1 1150395 D 321327 CDS YP_474576.1 86605813 3898398 1151170..1151457 1 NC_007775.1 identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase domain-containing protein 1151457 3898398 CYA_1124 Synechococcus sp. JA-3-3Ab antibiotic biosynthesis monooxygenase domain-containing protein YP_474576.1 1151170 D 321327 CDS YP_474577.1 86605814 3898399 1151589..1151933 1 NC_007775.1 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 1151933 3898399 CYA_1125 Synechococcus sp. JA-3-3Ab ArsR family transcriptional regulator YP_474577.1 1151589 D 321327 CDS YP_474578.1 86605815 3898400 1152554..1152952 1 NC_007775.1 identified by similarity to PIR:AD2038; ISSoc4, transposase orfA 1152952 3898400 CYA_1126 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfA YP_474578.1 1152554 D 321327 CDS YP_474579.1 86605816 3898401 1152934..1153500 1 NC_007775.1 identified by similarity to GB:AAC97587.1; ISSoc4, transposase orfB 1153500 3898401 CYA_1127 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfB YP_474579.1 1152934 D 321327 CDS YP_474580.1 86605817 3898402 complement(1153631..1154107) 1 NC_007775.1 identified by match to protein family HMM PF01797; ISSoc3, orfA transposase 1154107 3898402 CYA_1128 Synechococcus sp. JA-3-3Ab ISSoc3, orfA transposase YP_474580.1 1153631 R 321327 CDS YP_474581.1 86605818 3898819 1155508..1156698 1 NC_007775.1 identified by match to protein family HMM PF07690; major facilitator transporter 1156698 3898819 CYA_1131 Synechococcus sp. JA-3-3Ab major facilitator transporter YP_474581.1 1155508 D 321327 CDS YP_474582.1 86605819 3898820 complement(1156649..1157719) 1 NC_007775.1 identified by match to protein family HMM PF00563; EAL domain-containing protein 1157719 3898820 CYA_1130 Synechococcus sp. JA-3-3Ab EAL domain-containing protein YP_474582.1 1156649 R 321327 CDS YP_474583.1 86605820 3898821 complement(1157890..1158648) 1 NC_007775.1 identified by similarity to SP:P72933; match to protein family HMM PF00753; glyoxalase II family protein 1158648 3898821 CYA_1132 Synechococcus sp. JA-3-3Ab glyoxalase II family protein YP_474583.1 1157890 R 321327 CDS YP_474584.1 86605821 3898822 complement(1158655..1158912) 1 NC_007775.1 identified by similarity to GB:BAC91454.1; hypothetical protein 1158912 3898822 CYA_1133 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474584.1 1158655 R 321327 CDS YP_474585.1 86605822 3898823 complement(1159046..1159444) 1 NC_007775.1 identified by match to protein family HMM PF00226; DnaJ domain-containing protein 1159444 3898823 CYA_1134 Synechococcus sp. JA-3-3Ab DnaJ domain-containing protein YP_474585.1 1159046 R 321327 CDS YP_474586.1 86605823 3898824 complement(1159539..1159721) 1 NC_007775.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1159721 rpmF 3898824 rpmF Synechococcus sp. JA-3-3Ab 50S ribosomal protein L32 YP_474586.1 1159539 R 321327 CDS YP_474587.1 86605824 3898825 complement(1160019..1161290) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc3, orfB transposase 1161290 3898825 CYA_1136 Synechococcus sp. JA-3-3Ab ISSoc3, orfB transposase YP_474587.1 1160019 R 321327 CDS YP_474588.1 86605825 3898826 1161246..1161722 1 NC_007775.1 identified by match to protein family HMM PF01797; ISSoc3, orfA transposase 1161722 3898826 CYA_1137 Synechococcus sp. JA-3-3Ab ISSoc3, orfA transposase YP_474588.1 1161246 D 321327 CDS YP_474589.1 86605826 3898827 1161810..1162904 1 NC_007775.1 CsgG family protein 1162904 3898827 CYA_1138 Synechococcus sp. JA-3-3Ab CsgG family protein YP_474589.1 1161810 D 321327 CDS YP_474590.1 86605827 3898828 1163149..1163808 1 NC_007775.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02254; match to protein family HMM PF05368; match to protein family HMM PF07993; 3-beta hydroxysteroid dehydrogenase/isomerase family protein 1163808 3898828 CYA_1139 Synechococcus sp. JA-3-3Ab 3-beta hydroxysteroid dehydrogenase/isomerase family protein YP_474590.1 1163149 D 321327 CDS YP_474591.1 86605828 3898829 1163923..1166457 1 NC_007775.1 hypothetical protein 1166457 3898829 CYA_1140 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474591.1 1163923 D 321327 CDS YP_474592.1 86605829 3898830 1166464..1166559 1 NC_007775.1 hypothetical protein 1166559 3898830 CYA_1141 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474592.1 1166464 D 321327 CDS YP_474593.1 86605830 3898831 1166505..1166915 1 NC_007775.1 hypothetical protein 1166915 3898831 CYA_1142 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474593.1 1166505 D 321327 CDS YP_474594.1 86605831 3898832 1167658..1167912 1 NC_007775.1 identified by match to protein family HMM PF01844; HNH endonuclease domain-containing protein 1167912 3898832 CYA_1143 Synechococcus sp. JA-3-3Ab HNH endonuclease domain-containing protein YP_474594.1 1167658 D 321327 CDS YP_474595.1 86605832 3898833 complement(1167978..1168946) 1 NC_007775.1 identified by match to protein family HMM PF01571; aminomethyltransferase 1168946 3898833 CYA_1144 Synechococcus sp. JA-3-3Ab aminomethyltransferase YP_474595.1 1167978 R 321327 CDS YP_474596.1 86605833 3898834 1169041..1170579 1 NC_007775.1 hypothetical protein 1170579 3898834 CYA_1145 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474596.1 1169041 D 321327 CDS YP_474597.1 86605834 3898835 1170710..1170904 1 NC_007775.1 hypothetical protein 1170904 3898835 CYA_1147 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474597.1 1170710 D 321327 CDS YP_474598.1 86605835 3898836 complement(1170901..1171863) 1 NC_007775.1 identified by match to protein family HMM PF03547; auxin efflux carrier family protein 1171863 3898836 CYA_1146 Synechococcus sp. JA-3-3Ab auxin efflux carrier family protein YP_474598.1 1170901 R 321327 CDS YP_474599.1 86605836 3898837 complement(1171869..1173149) 1 NC_007775.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1173149 ispH 3898837 ispH Synechococcus sp. JA-3-3Ab 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_474599.1 1171869 R 321327 CDS YP_474600.1 86605837 3898858 complement(1173297..1173572) 1 NC_007775.1 hypothetical protein 1173572 3898858 CYA_1149 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474600.1 1173297 R 321327 CDS YP_474601.1 86605838 3898859 complement(1173595..1174071) 1 NC_007775.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 1174071 3898859 CYA_1150 Synechococcus sp. JA-3-3Ab pentapeptide repeat-containing protein YP_474601.1 1173595 R 321327 CDS YP_474602.1 86605839 3898860 complement(1174189..1176054) 1 NC_007775.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 1176054 glmU 3898860 glmU Synechococcus sp. JA-3-3Ab bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_474602.1 1174189 R 321327 CDS YP_474603.1 86605840 3898861 1176173..1176601 1 NC_007775.1 hypothetical protein 1176601 3898861 CYA_1152 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474603.1 1176173 D 321327 CDS YP_474604.1 86605841 3898862 1176916..1177371 1 NC_007775.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR01409; Rieske family iron-sulfur cluster-binding protein 1177371 3898862 CYA_1153 Synechococcus sp. JA-3-3Ab Rieske family iron-sulfur cluster-binding protein YP_474604.1 1176916 D 321327 CDS YP_474605.1 86605842 3898863 1177432..1178553 1 NC_007775.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 1178553 3898863 CYA_1154 Synechococcus sp. JA-3-3Ab glycoside hydrolase family protein YP_474605.1 1177432 D 321327 CDS YP_474606.1 86605843 3898864 1178651..1179544 1 NC_007775.1 identified by match to protein family HMM PF05239; PRC-barrel domain-containing protein 1179544 3898864 CYA_1155 Synechococcus sp. JA-3-3Ab PRC-barrel domain-containing protein YP_474606.1 1178651 D 321327 CDS YP_474607.1 86605844 3898865 complement(1179716..1180696) 1 NC_007775.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 1180696 3898865 CYA_1156 Synechococcus sp. JA-3-3Ab alpha/beta fold family hydrolase YP_474607.1 1179716 R 321327 CDS YP_474608.1 86605845 3898866 complement(1180726..1180950) 1 NC_007775.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1180950 infA 3898866 infA Synechococcus sp. JA-3-3Ab translation initiation factor IF-1 YP_474608.1 1180726 R 321327 CDS YP_474609.1 86605846 3898867 complement(1181081..1181854) 1 NC_007775.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential; methionine aminopeptidase 1181854 map-2 3898867 map-2 Synechococcus sp. JA-3-3Ab methionine aminopeptidase YP_474609.1 1181081 R 321327 CDS YP_474610.1 86605847 3898868 complement(1181893..1182474) 1 NC_007775.1 identified by similarity to SP:P27142; match to protein family HMM PF00406; match to protein family HMM TIGR01351; adenylate kinase 1182474 adk 3898868 adk Synechococcus sp. JA-3-3Ab adenylate kinase YP_474610.1 1181893 R 321327 CDS YP_474611.1 86605848 3898869 complement(1182474..1183772) 1 NC_007775.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1183772 secY 3898869 secY Synechococcus sp. JA-3-3Ab preprotein translocase subunit SecY YP_474611.1 1182474 R 321327 CDS YP_474612.1 86605849 3898870 complement(1183881..1184354) 1 NC_007775.1 late assembly protein; 50S ribosomal protein L15 1184354 rplO 3898870 rplO Synechococcus sp. JA-3-3Ab 50S ribosomal protein L15 YP_474612.1 1183881 R 321327 CDS YP_474613.1 86605850 3898871 complement(1184378..1184914) 1 NC_007775.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1184914 rpsE 3898871 rpsE Synechococcus sp. JA-3-3Ab 30S ribosomal protein S5 YP_474613.1 1184378 R 321327 CDS YP_474614.1 86605851 3898872 complement(1184933..1185301) 1 NC_007775.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1185301 rplR 3898872 rplR Synechococcus sp. JA-3-3Ab 50S ribosomal protein L18 YP_474614.1 1184933 R 321327 CDS YP_474615.1 86605852 3898873 complement(1185304..1185849) 1 NC_007775.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 1185849 rplF 3898873 rplF Synechococcus sp. JA-3-3Ab 50S ribosomal protein L6 YP_474615.1 1185304 R 321327 CDS YP_474616.1 86605853 3898874 complement(1185876..1186280) 1 NC_007775.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1186280 rpsH 3898874 rpsH Synechococcus sp. JA-3-3Ab 30S ribosomal protein S8 YP_474616.1 1185876 R 321327 CDS YP_474617.1 86605854 3898875 complement(1186341..1186883) 1 NC_007775.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1186883 rplE 3898875 rplE Synechococcus sp. JA-3-3Ab 50S ribosomal protein L5 YP_474617.1 1186341 R 321327 CDS YP_474618.1 86605855 3898876 complement(1186940..1187338) 1 NC_007775.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1187338 rplX 3898876 rplX Synechococcus sp. JA-3-3Ab 50S ribosomal protein L24 YP_474618.1 1186940 R 321327 CDS YP_474619.1 86605856 3898877 complement(1187338..1187706) 1 NC_007775.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 1187706 rplN 3898877 rplN Synechococcus sp. JA-3-3Ab 50S ribosomal protein L14 YP_474619.1 1187338 R 321327 CDS YP_474620.1 86605857 3898878 complement(1187703..1187954) 1 NC_007775.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 1187954 rpsQ 3898878 rpsQ Synechococcus sp. JA-3-3Ab 30S ribosomal protein S17 YP_474620.1 1187703 R 321327 CDS YP_474621.1 86605858 3898879 complement(1187954..1188190) 1 NC_007775.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 1188190 rpmC 3898879 rpmC Synechococcus sp. JA-3-3Ab 50S ribosomal protein L29 YP_474621.1 1187954 R 321327 CDS YP_474622.1 86605859 3898880 complement(1188208..1188684) 1 NC_007775.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1188684 rplP 3898880 rplP Synechococcus sp. JA-3-3Ab 50S ribosomal protein L16 YP_474622.1 1188208 R 321327 CDS YP_474623.1 86605860 3898881 complement(1188740..1189486) 1 NC_007775.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 1189486 rpsC 3898881 rpsC Synechococcus sp. JA-3-3Ab 30S ribosomal protein S3 YP_474623.1 1188740 R 321327 CDS YP_474624.1 86605861 3898882 complement(1189528..1189899) 1 NC_007775.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 1189899 rplV 3898882 rplV Synechococcus sp. JA-3-3Ab 50S ribosomal protein L22 YP_474624.1 1189528 R 321327 CDS YP_474625.1 86605862 3898883 complement(1189942..1190223) 1 NC_007775.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 1190223 rpsS 3898883 rpsS Synechococcus sp. JA-3-3Ab 30S ribosomal protein S19 YP_474625.1 1189942 R 321327 CDS YP_474626.1 86605863 3898884 complement(1190302..1191186) 1 NC_007775.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1191186 rplB 3898884 rplB Synechococcus sp. JA-3-3Ab 50S ribosomal protein L2 YP_474626.1 1190302 R 321327 CDS YP_474627.1 86605864 3898885 complement(1191247..1191546) 1 NC_007775.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 1191546 rplW 3898885 rplW Synechococcus sp. JA-3-3Ab 50S ribosomal protein L23 YP_474627.1 1191247 R 321327 CDS YP_474628.1 86605865 3898886 complement(1191539..1192519) 1 NC_007775.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 1192519 rplD 3898886 rplD Synechococcus sp. JA-3-3Ab 50S ribosomal protein L4 YP_474628.1 1191539 R 321327 CDS YP_474629.1 86605866 3898887 complement(1192571..1193215) 1 NC_007775.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 1193215 rplC 3898887 rplC Synechococcus sp. JA-3-3Ab 50S ribosomal protein L3 YP_474629.1 1192571 R 321327 CDS YP_474630.1 86605867 3898888 1193692..1195644 1 NC_007775.1 hypothetical protein 1195644 3898888 CYA_1179 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474630.1 1193692 D 321327 CDS YP_474631.1 86605868 3898890 1196824..1198029 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc7, transposase 1198029 3898890 CYA_1181 Synechococcus sp. JA-3-3Ab ISSoc7, transposase YP_474631.1 1196824 D 321327 CDS YP_474632.1 86605869 3898891 1198072..1198404 1 NC_007775.1 identified by similarity to GB:BAC91517.1; hypothetical protein 1198404 3898891 CYA_1182 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474632.1 1198072 D 321327 CDS YP_474633.1 86605870 3898892 1198401..1199069 1 NC_007775.1 hypothetical protein 1199069 3898892 CYA_1183 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474633.1 1198401 D 321327 CDS YP_474634.1 86605871 3898893 1199237..1199788 1 NC_007775.1 hypothetical protein 1199788 3898893 CYA_1184 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474634.1 1199237 D 321327 CDS YP_474635.1 86605872 3898894 1199739..1199873 1 NC_007775.1 hypothetical protein 1199873 3898894 CYA_1185 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474635.1 1199739 D 321327 CDS YP_474636.1 86605873 3898895 complement(1200073..1201317) 1 NC_007775.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1201317 metK 3898895 metK Synechococcus sp. JA-3-3Ab S-adenosylmethionine synthetase YP_474636.1 1200073 R 321327 CDS YP_474637.1 86605874 3898896 complement(1201814..1202182) 1 NC_007775.1 lipoprotein 1202182 3898896 CYA_1187 Synechococcus sp. JA-3-3Ab lipoprotein YP_474637.1 1201814 R 321327 CDS YP_474638.1 86605875 3898897 1202372..1203058 1 NC_007775.1 identified by match to protein family HMM PF02572; match to protein family HMM TIGR00708; cob(I)alamin adenosyltransferase 1203058 cobO-1 3898897 cobO-1 Synechococcus sp. JA-3-3Ab cob(I)alamin adenosyltransferase YP_474638.1 1202372 D 321327 CDS YP_474639.1 86605876 3898898 1203076..1204482 1 NC_007775.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 1204482 cobB 3898898 cobB Synechococcus sp. JA-3-3Ab cobyrinic acid a,c-diamide synthase YP_474639.1 1203076 D 321327 CDS YP_474640.1 86605877 3898899 1205228..1205575 1 NC_007775.1 hypothetical protein 1205575 3898899 CYA_1190 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474640.1 1205228 D 321327 CDS YP_474641.1 86605878 3898901 complement(1205839..1206003) 1 NC_007775.1 hypothetical protein 1206003 3898901 CYA_1192 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474641.1 1205839 R 321327 CDS YP_474642.1 86605879 3898902 1206093..1206695 1 NC_007775.1 identified by match to protein family HMM PF00574; match to protein family HMM TIGR00493; ATP-dependent Clp protease, proteolytic subunit ClpP 1206695 clpP 3898902 clpP Synechococcus sp. JA-3-3Ab ATP-dependent Clp protease, proteolytic subunit ClpP YP_474642.1 1206093 D 321327 CDS YP_474643.1 86605880 3898903 1207204..1208628 1 NC_007775.1 type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase 1208628 rbcL 3898903 rbcL Synechococcus sp. JA-3-3Ab ribulose bisophosphate carboxylase YP_474643.1 1207204 D 321327 CDS YP_474644.1 86605881 3898904 1208699..1209106 1 NC_007775.1 identified by match to protein family HMM PF02341; chaperon-like protein RbcX 1209106 rbcX 3898904 rbcX Synechococcus sp. JA-3-3Ab chaperon-like protein RbcX YP_474644.1 1208699 D 321327 CDS YP_474645.1 86605882 3898905 1209115..1209447 1 NC_007775.1 identified by match to protein family HMM PF00101; ribulose bisphosphate carboxylase, small subunit 1209447 cbbS 3898905 cbbS Synechococcus sp. JA-3-3Ab ribulose bisphosphate carboxylase, small subunit YP_474645.1 1209115 D 321327 CDS YP_474646.1 86605883 3898906 complement(1209705..1210511) 1 NC_007775.1 identified by match to protein family HMM PF01940; match to protein family HMM TIGR00297; hypothetical protein 1210511 3898906 CYA_1197 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474646.1 1209705 R 321327 CDS YP_474647.1 86605884 3898908 1210661..1211167 1 NC_007775.1 hypothetical protein 1211167 3898908 CYA_1200 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474647.1 1210661 D 321327 CDS YP_474648.1 86605885 3898909 complement(1210709..1211260) 1 NC_007775.1 hypothetical protein 1211260 3898909 CYA_1199 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474648.1 1210709 R 321327 CDS YP_474649.1 86605886 3898910 1211787..1212764 1 NC_007775.1 identified by match to protein family HMM PF02562; PhoH family protein 1212764 3898910 CYA_1201 Synechococcus sp. JA-3-3Ab PhoH family protein YP_474649.1 1211787 D 321327 CDS YP_474650.1 86605887 3898911 1212761..1213486 1 NC_007775.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02252; haloacid dehalogenase 1213486 3898911 CYA_1203 Synechococcus sp. JA-3-3Ab haloacid dehalogenase YP_474650.1 1212761 D 321327 CDS YP_474651.1 86605888 3898912 complement(1213464..1214252) 1 NC_007775.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 1214252 3898912 CYA_1202 Synechococcus sp. JA-3-3Ab alpha/beta fold family hydrolase YP_474651.1 1213464 R 321327 CDS YP_474652.1 86605889 3898913 complement(1214240..1214983) 1 NC_007775.1 identified by match to protein family HMM PF01553; acyltransferase family protein 1214983 3898913 CYA_1204 Synechococcus sp. JA-3-3Ab acyltransferase family protein YP_474652.1 1214240 R 321327 CDS YP_474653.1 86605890 3898914 complement(1214995..1216128) 1 NC_007775.1 identified by match to protein family HMM PF02572; hypothetical protein 1216128 cobO-2 3898914 cobO-2 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474653.1 1214995 R 321327 CDS YP_474654.1 86605891 3899279 1216339..1217253 1 NC_007775.1 identified by similarity to SP:P16703; match to protein family HMM PF00291; match to protein family HMM TIGR01136; cysteine synthase B 1217253 3899279 CYA_1206 Synechococcus sp. JA-3-3Ab cysteine synthase B YP_474654.1 1216339 D 321327 CDS YP_474655.1 86605892 3899281 complement(1217481..1217972) 1 NC_007775.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 1217972 3899281 CYA_1208 Synechococcus sp. JA-3-3Ab pentapeptide repeat-containing protein YP_474655.1 1217481 R 321327 CDS YP_474656.1 86605893 3899282 1218655..1219383 1 NC_007775.1 identified by match to protein family HMM PF00005; hydrophobic amino acid uptake transporter ABC transporter family ATP-binding protein 1219383 3899282 CYA_1209 Synechococcus sp. JA-3-3Ab hydrophobic amino acid uptake transporter ABC transporter family ATP-binding protein YP_474656.1 1218655 D 321327 CDS YP_474657.1 86605894 3899283 complement(1219396..1220859) 1 NC_007775.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1220859 3899283 CYA_1210 Synechococcus sp. JA-3-3Ab pyruvate kinase YP_474657.1 1219396 R 321327 CDS YP_474658.1 86605895 3899284 1221034..1222236 1 NC_007775.1 identified by match to protein family HMM PF03739; YjgP/YjgQ permease 1222236 3899284 CYA_1211 Synechococcus sp. JA-3-3Ab YjgP/YjgQ permease YP_474658.1 1221034 D 321327 CDS YP_474659.1 86605896 3899285 complement(1222248..1223261) 1 NC_007775.1 identified by similarity to SP:P39665; phosphate ABC transporter substrate-binding protein 1223261 3899285 CYA_1212 Synechococcus sp. JA-3-3Ab phosphate ABC transporter substrate-binding protein YP_474659.1 1222248 R 321327 CDS YP_474660.1 86605897 3899286 complement(1223354..1225405) 1 NC_007775.1 identified by match to protein family HMM PF00773; VacB/RNB family exoribonuclease 1225405 3899286 CYA_1213 Synechococcus sp. JA-3-3Ab VacB/RNB family exoribonuclease YP_474660.1 1223354 R 321327 CDS YP_474661.1 86605898 3899287 1225785..1226417 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family DNA-binding response regulator 1226417 3899287 CYA_1214 Synechococcus sp. JA-3-3Ab LuxR family DNA-binding response regulator YP_474661.1 1225785 D 321327 CDS YP_474662.1 86605899 3899288 1226617..1227825 1 NC_007775.1 identified by match to protein family HMM PF04422; match to protein family HMM PF04432; coenzyme F420 hydrogenase/dehydrogenase family protein 1227825 3899288 CYA_1215 Synechococcus sp. JA-3-3Ab coenzyme F420 hydrogenase/dehydrogenase family protein YP_474662.1 1226617 D 321327 CDS YP_474663.1 86605900 3899289 complement(1227848..1229044) 1 NC_007775.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1229044 3899289 CYA_1216 Synechococcus sp. JA-3-3Ab aspartate aminotransferase YP_474663.1 1227848 R 321327 CDS YP_474664.1 86605901 3899290 1229210..1230589 1 NC_007775.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1230589 engA 3899290 engA Synechococcus sp. JA-3-3Ab GTP-binding protein EngA YP_474664.1 1229210 D 321327 CDS YP_474665.1 86605902 3899291 1230625..1231089 1 NC_007775.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1231089 smpB 3899291 smpB Synechococcus sp. JA-3-3Ab SsrA-binding protein YP_474665.1 1230625 D 321327 CDS YP_474666.1 86605903 3899292 complement(1231275..1231877) 1 NC_007775.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 1231877 3899292 CYA_1219 Synechococcus sp. JA-3-3Ab glutathione S-transferase YP_474666.1 1231275 R 321327 CDS YP_474667.1 86605904 3899293 complement(1231949..1233025) 1 NC_007775.1 identified by similarity to SP:P42182; match to protein family HMM PF01926; match to protein family HMM PF07650; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436; match to protein family HMM TIGR00650; GTP-binding protein Era 1233025 era 3899293 era Synechococcus sp. JA-3-3Ab GTP-binding protein Era YP_474667.1 1231949 R 321327 CDS YP_474668.1 86605905 3899294 complement(1233034..1234773) 1 NC_007775.1 identified by match to protein family HMM TIGR02669; SpoIID/LytB domain-containing protein 1234773 3899294 CYA_1221 Synechococcus sp. JA-3-3Ab SpoIID/LytB domain-containing protein YP_474668.1 1233034 R 321327 CDS YP_474669.1 86605906 3899334 complement(1235330..1235773) 1 NC_007775.1 Bdr protein 1235773 3899334 CYA_1223 Synechococcus sp. JA-3-3Ab Bdr protein YP_474669.1 1235330 R 321327 CDS YP_474670.1 86605907 3899335 complement(1235827..1236822) 1 NC_007775.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728; AAA ATPase 1236822 3899335 CYA_1224 Synechococcus sp. JA-3-3Ab AAA ATPase YP_474670.1 1235827 R 321327 CDS YP_474671.1 86605908 3899336 1236952..1237392 1 NC_007775.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; rrf2 family protein 1237392 3899336 CYA_1226 Synechococcus sp. JA-3-3Ab rrf2 family protein YP_474671.1 1236952 D 321327 CDS YP_474672.1 86605909 3899337 complement(1237389..1237547) 1 NC_007775.1 hypothetical protein 1237547 3899337 CYA_1225 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474672.1 1237389 R 321327 CDS YP_474673.1 86605910 3899338 1237546..1238460 1 NC_007775.1 identified by similarity to SP:P46228; match to protein family HMM PF00575; 30S ribosomal protein S1 1238460 3899338 CYA_1227 Synechococcus sp. JA-3-3Ab 30S ribosomal protein S1 YP_474673.1 1237546 D 321327 CDS YP_474674.1 86605911 3899339 1238961..1240181 1 NC_007775.1 identified by match to protein family HMM PF00395; S-layer protein 1240181 3899339 CYA_1228 Synechococcus sp. JA-3-3Ab S-layer protein YP_474674.1 1238961 D 321327 CDS YP_474675.1 86605912 3899340 complement(1240339..1240980) 1 NC_007775.1 identified by match to protein family HMM PF06055; ExoD family protein 1240980 3899340 CYA_1229 Synechococcus sp. JA-3-3Ab ExoD family protein YP_474675.1 1240339 R 321327 CDS YP_474676.1 86605913 3899341 complement(1241544..1242302) 1 NC_007775.1 identified by similarity to SP:P55149; match to protein family HMM PF06386; GvpL/GvpF family gas vesicle protein 1242302 3899341 CYA_1230 Synechococcus sp. JA-3-3Ab GvpL/GvpF family gas vesicle protein YP_474676.1 1241544 R 321327 CDS YP_474677.1 86605914 3899342 complement(1242268..1243389) 1 NC_007775.1 identified by match to protein family HMM PF00483; nucleotidyl transferase family protein 1243389 3899342 CYA_1231 Synechococcus sp. JA-3-3Ab nucleotidyl transferase family protein YP_474677.1 1242268 R 321327 CDS YP_474678.1 86605915 3899343 1243652..1244401 1 NC_007775.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 1244401 hisG 3899343 hisG Synechococcus sp. JA-3-3Ab ATP phosphoribosyltransferase catalytic subunit YP_474678.1 1243652 D 321327 CDS YP_474679.1 86605916 3899344 1244601..1245395 1 NC_007775.1 identified by similarity to SP:P55221; match to protein family HMM PF01716; photosystem II manganese-stabilizing protein 1245395 psbO 3899344 psbO Synechococcus sp. JA-3-3Ab photosystem II manganese-stabilizing protein YP_474679.1 1244601 D 321327 CDS YP_474680.1 86605917 3899345 1245414..1245695 1 NC_007775.1 hypothetical protein 1245695 3899345 CYA_1234 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474680.1 1245414 D 321327 CDS YP_474681.1 86605918 3899346 1246105..1247484 1 NC_007775.1 lipoprotein 1247484 3899346 CYA_1235 Synechococcus sp. JA-3-3Ab lipoprotein YP_474681.1 1246105 D 321327 CDS YP_474682.1 86605919 3899347 1247523..1247939 1 NC_007775.1 identified by similarity to GB:BAD79565.1; hypothetical protein 1247939 3899347 CYA_1236 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474682.1 1247523 D 321327 CDS YP_474683.1 86605920 3899348 1247911..1249035 1 NC_007775.1 identified by similarity to SP:P23861; match to protein family HMM TIGR01409; polyamine ABC transporter polyamine-binding protein 1249035 3899348 CYA_1237 Synechococcus sp. JA-3-3Ab polyamine ABC transporter polyamine-binding protein YP_474683.1 1247911 D 321327 CDS YP_474684.1 86605921 3899349 complement(1249105..1250778) 1 NC_007775.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1250778 tig 3899349 tig Synechococcus sp. JA-3-3Ab trigger factor YP_474684.1 1249105 R 321327 CDS YP_474685.1 86605922 3899350 complement(1250867..1251250) 1 NC_007775.1 hypothetical protein 1251250 3899350 CYA_1239 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474685.1 1250867 R 321327 CDS YP_474686.1 86605923 3899351 complement(1251335..1252369) 1 NC_007775.1 identified by match to protein family HMM PF01578; cytochrome c assembly protein 1252369 3899351 CYA_1240 Synechococcus sp. JA-3-3Ab cytochrome c assembly protein YP_474686.1 1251335 R 321327 CDS YP_474687.1 86605924 3899352 1252474..1253853 1 NC_007775.1 hypothetical protein 1253853 3899352 CYA_1241 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474687.1 1252474 D 321327 CDS YP_474688.1 86605925 3899353 1254523..1255479 1 NC_007775.1 identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; RNA polymerase sigma factor 1255479 3899353 CYA_1243 Synechococcus sp. JA-3-3Ab RNA polymerase sigma factor YP_474688.1 1254523 D 321327 CDS YP_474689.1 86605926 3899374 complement(1255463..1256599) 1 NC_007775.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 1256599 gcvT 3899374 gcvT Synechococcus sp. JA-3-3Ab glycine cleavage system aminomethyltransferase T YP_474689.1 1255463 R 321327 CDS YP_474690.1 86605927 3899375 1256666..1257100 1 NC_007775.1 identified by match to protein family HMM PF00903; match to protein family HMM TIGR00068; lactoylglutathione lyase 1257100 gloA 3899375 gloA Synechococcus sp. JA-3-3Ab lactoylglutathione lyase YP_474690.1 1256666 D 321327 CDS YP_474691.1 86605928 3899376 complement(1257125..1258216) 1 NC_007775.1 identified by match to protein family HMM TIGR01352; TonB family protein 1258216 3899376 CYA_1245 Synechococcus sp. JA-3-3Ab TonB family protein YP_474691.1 1257125 R 321327 CDS YP_474692.1 86605929 3899377 1258476..1258955 1 NC_007775.1 identified by match to protein family HMM PF00903; glyoxalase family protein 1258955 3899377 CYA_1246 Synechococcus sp. JA-3-3Ab glyoxalase family protein YP_474692.1 1258476 D 321327 CDS YP_474693.1 86605930 3899378 1258973..1259830 1 NC_007775.1 identified by match to protein family HMM PF06485; hypothetical protein 1259830 3899378 CYA_1247 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474693.1 1258973 D 321327 CDS YP_474694.1 86605931 3899379 1260709..1261710 1 NC_007775.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 1261710 menC 3899379 menC Synechococcus sp. JA-3-3Ab O-succinylbenzoate synthase YP_474694.1 1260709 D 321327 CDS YP_474696.1 86605933 3899381 1263140..1263502 1 NC_007775.1 hypothetical protein 1263502 3899381 CYA_1251 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474696.1 1263140 D 321327 CDS YP_474697.1 86605934 3899382 complement(1263499..1264620) 1 NC_007775.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 1264620 3899382 CYA_1250 Synechococcus sp. JA-3-3Ab methyl-accepting chemotaxis protein YP_474697.1 1263499 R 321327 CDS YP_474698.1 86605935 3899383 complement(1264886..1266106) 1 NC_007775.1 identified by match to protein family HMM PF01590; match to protein family HMM PF01966; GAF domain-containing protein 1266106 3899383 CYA_1252 Synechococcus sp. JA-3-3Ab GAF domain-containing protein YP_474698.1 1264886 R 321327 CDS YP_474699.1 86605936 3899384 1266259..1266936 1 NC_007775.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1266936 pth 3899384 pth Synechococcus sp. JA-3-3Ab peptidyl-tRNA hydrolase YP_474699.1 1266259 D 321327 CDS YP_474700.1 86605937 3899385 complement(1266981..1268219) 1 NC_007775.1 identified by match to protein family HMM PF01594; hypothetical protein 1268219 3899385 CYA_1254 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474700.1 1266981 R 321327 CDS YP_474701.1 86605938 3899386 complement(1268403..1269422) 1 NC_007775.1 hypothetical protein 1269422 3899386 CYA_1255 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474701.1 1268403 R 321327 CDS YP_474702.1 86605939 3899407 complement(1270024..1272645) 1 NC_007775.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1272645 leuS 3899407 leuS Synechococcus sp. JA-3-3Ab leucyl-tRNA synthetase YP_474702.1 1270024 R 321327 CDS YP_474703.1 86605940 3899408 complement(1272774..1273664) 1 NC_007775.1 identified by similarity to SP:P00454; match to protein family HMM PF00175; ferredoxin--NADP reductase 1273664 petH 3899408 petH Synechococcus sp. JA-3-3Ab ferredoxin--NADP reductase YP_474703.1 1272774 R 321327 CDS YP_474704.1 86605941 3899409 1273982..1274989 1 NC_007775.1 Catalyzes a reaction in which the CO2 acceptor molecule, RuBP, is generated via the phosphorylation of ribulose 5-phosphate with ATP; phosphoribulokinase 1274989 prk 3899409 prk Synechococcus sp. JA-3-3Ab phosphoribulokinase YP_474704.1 1273982 D 321327 CDS YP_474705.1 86605942 3899410 1275064..1275795 1 NC_007775.1 identified by match to protein family HMM PF01182; match to protein family HMM TIGR01198; 6-phosphogluconolactonase 1275795 pgl 3899410 pgl Synechococcus sp. JA-3-3Ab 6-phosphogluconolactonase YP_474705.1 1275064 D 321327 CDS YP_474706.1 86605943 3899411 1275911..1276081 1 NC_007775.1 identified by similarity to GB:BAC09330.1; hypothetical protein 1276081 3899411 CYA_1260 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474706.1 1275911 D 321327 CDS YP_474707.1 86605944 3899413 1277778..1278923 1 NC_007775.1 identified by similarity to GB:BAD71308.1; hypothetical protein 1278923 3899413 CYA_1262 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474707.1 1277778 D 321327 CDS YP_474708.1 86605945 3899414 1279028..1279534 1 NC_007775.1 hypothetical protein 1279534 3899414 CYA_1263 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474708.1 1279028 D 321327 CDS YP_474709.1 86605946 3899415 1279684..1280436 1 NC_007775.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 1280436 minC 3899415 minC Synechococcus sp. JA-3-3Ab septum formation inhibitor YP_474709.1 1279684 D 321327 CDS YP_474710.1 86605947 3899416 1280433..1281239 1 NC_007775.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968; septum site-determining protein MinD 1281239 minD 3899416 minD Synechococcus sp. JA-3-3Ab septum site-determining protein MinD YP_474710.1 1280433 D 321327 CDS YP_474711.1 86605948 3899417 1281330..1281692 1 NC_007775.1 identified by match to protein family HMM PF03776; match to protein family HMM TIGR01215; cell division topological specificity factor MinE 1281692 minE 3899417 minE Synechococcus sp. JA-3-3Ab cell division topological specificity factor MinE YP_474711.1 1281330 D 321327 CDS YP_474712.1 86605949 3899418 1281926..1284115 1 NC_007775.1 identified by match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein 1284115 3899418 CYA_1268 Synechococcus sp. JA-3-3Ab monovalent cation:proton antiporter-2 (CPA2) family protein YP_474712.1 1281926 D 321327 CDS YP_474713.1 86605950 3899419 complement(1284112..1284456) 1 NC_007775.1 identified by similarity to SP:P39323; match to protein family HMM PF03674; hypothetical protein 1284456 3899419 CYA_1267 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474713.1 1284112 R 321327 CDS YP_474714.1 86605951 3899420 complement(1284501..1285112) 1 NC_007775.1 identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; membrane protein 1285112 3899420 CYA_1269 Synechococcus sp. JA-3-3Ab membrane protein YP_474714.1 1284501 R 321327 CDS YP_474715.1 86605952 3899421 complement(1285137..1286150) 1 NC_007775.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1286150 holB 3899421 holB Synechococcus sp. JA-3-3Ab DNA polymerase III subunit delta' YP_474715.1 1285137 R 321327 CDS YP_474716.1 86605953 3899422 complement(1286275..1286754) 1 NC_007775.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein 1286754 accB 3899422 accB Synechococcus sp. JA-3-3Ab acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_474716.1 1286275 R 321327 CDS YP_474717.1 86605954 3899423 complement(1286822..1287379) 1 NC_007775.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1287379 efp 3899423 efp Synechococcus sp. JA-3-3Ab elongation factor P YP_474717.1 1286822 R 321327 CDS YP_474718.1 86605955 3899424 complement(1287416..1288099) 1 NC_007775.1 identified by match to protein family HMM PF00814; glycoprotease family protein 1288099 3899424 CYA_1273 Synechococcus sp. JA-3-3Ab glycoprotease family protein YP_474718.1 1287416 R 321327 CDS YP_474719.1 86605956 3899425 1288198..1289262 1 NC_007775.1 identified by match to protein family HMM PF00124; match to protein family HMM TIGR01151; photosystem II protein D1 1289262 psbA-1 3899425 psbA-1 Synechococcus sp. JA-3-3Ab photosystem II protein D1 YP_474719.1 1288198 D 321327 CDS YP_474720.1 86605957 3899426 complement(1289332..1289757) 1 NC_007775.1 hypothetical protein 1289757 3899426 CYA_1275 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474720.1 1289332 R 321327 CDS YP_474721.1 86605958 3899427 1289747..1289896 1 NC_007775.1 hypothetical protein 1289896 3899427 CYA_1276 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474721.1 1289747 D 321327 CDS YP_474724.1 86605961 3899430 complement(1290363..1291310) 1 NC_007775.1 identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfAB 1291310 3899430 CYA_1279 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfAB YP_474724.1 1290363 R 321327 CDS YP_474725.1 86605962 3899431 1291390..1291635 1 NC_007775.1 identified by similarity to GB:AAS69771.1; hypothetical protein 1291635 3899431 CYA_1281 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474725.1 1291390 D 321327 CDS YP_474726.1 86605963 3899432 complement(1291474..1291935) 1 NC_007775.1 TatC family protein, truncation 1291935 3899432 CYA_1280 Synechococcus sp. JA-3-3Ab TatC family protein, truncation YP_474726.1 1291474 R 321327 CDS YP_474727.1 86605964 3899433 complement(1292098..1293303) 1 NC_007775.1 identified by similarity to SP:Q52814; match to protein family HMM PF00528; match to protein family HMM TIGR01726; polar amino acid ABC transporter permease 1293303 3899433 CYA_1282 Synechococcus sp. JA-3-3Ab polar amino acid ABC transporter permease YP_474727.1 1292098 R 321327 CDS YP_474728.1 86605965 3899434 complement(1293307..1294479) 1 NC_007775.1 identified by similarity to SP:Q52813; match to protein family HMM PF00528; match to protein family HMM TIGR01726; polar amino acid ABC transporter permease 1294479 3899434 CYA_1283 Synechococcus sp. JA-3-3Ab polar amino acid ABC transporter permease YP_474728.1 1293307 R 321327 CDS YP_474729.1 86605966 3899435 complement(1294588..1295625) 1 NC_007775.1 identified by similarity to SP:Q52812; match to protein family HMM PF00497; polar amino acid ABC transporter amino acid-binding protein 1295625 3899435 CYA_1284 Synechococcus sp. JA-3-3Ab polar amino acid ABC transporter amino acid-binding protein YP_474729.1 1294588 R 321327 CDS YP_474730.1 86605967 3899436 1295889..1296677 1 NC_007775.1 identified by similarity to SP:Q52815; match to protein family HMM PF00005; polar amino acid ABC transporter ATP-binding protein 1296677 3899436 CYA_1285 Synechococcus sp. JA-3-3Ab polar amino acid ABC transporter ATP-binding protein YP_474730.1 1295889 D 321327 CDS YP_474731.1 86605968 3899437 complement(1296686..1297534) 1 NC_007775.1 identified by similarity to GB:AAV47563.1; hypothetical protein 1297534 3899437 CYA_1286 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474731.1 1296686 R 321327 CDS YP_474732.1 86605969 3899438 1297563..1297778 1 NC_007775.1 hypothetical protein 1297778 3899438 CYA_1287 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474732.1 1297563 D 321327 CDS YP_474733.1 86605970 3899440 1299385..1300230 1 NC_007775.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1300230 trpA 3899440 trpA Synechococcus sp. JA-3-3Ab tryptophan synthase subunit alpha YP_474733.1 1299385 D 321327 CDS YP_474734.1 86605971 3899441 complement(1300215..1300781) 1 NC_007775.1 identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfB 1300781 3899441 CYA_1289 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfB YP_474734.1 1300215 R 321327 CDS YP_474735.1 86605972 3899442 complement(1300763..1301161) 1 NC_007775.1 identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfA 1301161 3899442 CYA_1291 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfA YP_474735.1 1300763 R 321327 CDS YP_474736.1 86605973 3899443 1301241..1301537 1 NC_007775.1 hypothetical protein 1301537 3899443 CYA_1292 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474736.1 1301241 D 321327 CDS YP_474737.1 86605974 3899444 1301518..1304331 1 NC_007775.1 identified by match to protein family HMM PF04851; type III restriction-modification system, res subunit 1304331 3899444 CYA_1293 Synechococcus sp. JA-3-3Ab type III restriction-modification system, res subunit YP_474737.1 1301518 D 321327 CDS YP_474738.1 86605975 3899445 1304681..1305313 1 NC_007775.1 identified by similarity to SP:P39329; anaerobic ribonucleotide reductase activating protein 1305313 3899445 CYA_1294 Synechococcus sp. JA-3-3Ab anaerobic ribonucleotide reductase activating protein YP_474738.1 1304681 D 321327 CDS YP_474739.1 86605976 3899465 complement(1305333..1305617) 1 NC_007775.1 hypothetical protein 1305617 3899465 CYA_1295 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474739.1 1305333 R 321327 CDS YP_474740.1 86605977 3899466 1305857..1306660 1 NC_007775.1 identified by match to protein family HMM PF01145; stomatin/podocin/band 7/nephrosis.2/SPFH (stomatin) family protein 1306660 3899466 CYA_1296 Synechococcus sp. JA-3-3Ab stomatin/podocin/band 7/nephrosis.2/SPFH (stomatin) family protein YP_474740.1 1305857 D 321327 CDS YP_474741.1 86605978 3899467 1306701..1307639 1 NC_007775.1 identified by match to protein family HMM PF01145; HflC/HflK family protein 1307639 3899467 CYA_1297 Synechococcus sp. JA-3-3Ab HflC/HflK family protein YP_474741.1 1306701 D 321327 CDS YP_474742.1 86605979 3899468 complement(1307640..1308344) 1 NC_007775.1 ComF family protein 1308344 3899468 CYA_1298 Synechococcus sp. JA-3-3Ab ComF family protein YP_474742.1 1307640 R 321327 CDS YP_474743.1 86605980 3899469 1308542..1308949 1 NC_007775.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 1308949 rpsL 3899469 rpsL Synechococcus sp. JA-3-3Ab 30S ribosomal protein S12 YP_474743.1 1308542 D 321327 CDS YP_474744.1 86605981 3899470 1308993..1309463 1 NC_007775.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1309463 rpsG 3899470 rpsG Synechococcus sp. JA-3-3Ab 30S ribosomal protein S7 YP_474744.1 1308993 D 321327 CDS YP_474745.1 86605982 3899471 1309620..1311752 1 NC_007775.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1311752 fusA 3899471 fusA Synechococcus sp. JA-3-3Ab elongation factor G YP_474745.1 1309620 D 321327 CDS YP_474746.1 86605983 3899472 1311775..1313004 1 NC_007775.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1313004 tuf 3899472 tuf Synechococcus sp. JA-3-3Ab elongation factor Tu YP_474746.1 1311775 D 321327 CDS YP_474747.1 86605984 3899473 1313098..1313415 1 NC_007775.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 1313415 rpsJ 3899473 rpsJ Synechococcus sp. JA-3-3Ab 30S ribosomal protein S10 YP_474747.1 1313098 D 321327 CDS YP_474748.1 86605985 3899474 1313462..1314343 1 NC_007775.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1314343 dapB 3899474 dapB Synechococcus sp. JA-3-3Ab dihydrodipicolinate reductase YP_474748.1 1313462 D 321327 CDS YP_474749.1 86605986 3899475 complement(1314340..1315251) 1 NC_007775.1 identified by match to protein family HMM PF02219; methylenetetrahydrofolate reductase family protein 1315251 3899475 CYA_1304 Synechococcus sp. JA-3-3Ab methylenetetrahydrofolate reductase family protein YP_474749.1 1314340 R 321327 CDS YP_474750.1 86605987 3899476 complement(1315337..1316857) 1 NC_007775.1 hypothetical protein 1316857 3899476 CYA_1306 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474750.1 1315337 R 321327 CDS YP_474751.1 86605988 3899477 complement(1317026..1317757) 1 NC_007775.1 hypothetical protein 1317757 3899477 CYA_1307 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474751.1 1317026 R 321327 CDS YP_474752.1 86605989 3899478 complement(1318030..1319391) 1 NC_007775.1 identified by match to protein family HMM PF01266; oxidoreductase, FAD-dependent 1319391 3899478 CYA_1308 Synechococcus sp. JA-3-3Ab oxidoreductase, FAD-dependent YP_474752.1 1318030 R 321327 CDS YP_474753.1 86605990 3899479 complement(1319466..1319630) 1 NC_007775.1 hypothetical protein 1319630 3899479 CYA_1309 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474753.1 1319466 R 321327 CDS YP_474754.1 86605991 3899480 complement(1319891..1320673) 1 NC_007775.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; Sec-independent protein translocase TatC 1320673 tatC 3899480 tatC Synechococcus sp. JA-3-3Ab Sec-independent protein translocase TatC YP_474754.1 1319891 R 321327 CDS YP_474755.1 86605992 3899481 1321050..1321982 1 NC_007775.1 identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfAB 1321982 3899481 CYA_1311 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfAB YP_474755.1 1321050 D 321327 CDS YP_474756.1 86605993 3899482 complement(1322087..1322407) 1 NC_007775.1 identified by match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein 1322407 3899482 CYA_1312 Synechococcus sp. JA-3-3Ab nucleotidyltransferase domain-containing protein YP_474756.1 1322087 R 321327 CDS YP_529502.1 90296795 3899483 complement(1322404..1322736) 1 NC_007775.1 DNA methyltransferase 1322736 3899483 CYA_1313 Synechococcus sp. JA-3-3Ab DNA methyltransferase YP_529502.1 1322404 R 321327 CDS YP_474757.1 86605994 3899484 complement(1326864..1329119) 1 NC_007775.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; DNA internalization competence protein 1329119 3899484 CYA_1316 Synechococcus sp. JA-3-3Ab DNA internalization competence protein YP_474757.1 1326864 R 321327 CDS YP_474758.1 86605995 3899485 1329550..1329765 1 NC_007775.1 hypothetical protein 1329765 3899485 CYA_1317 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474758.1 1329550 D 321327 CDS YP_474759.1 86605996 3899486 1329842..1330684 1 NC_007775.1 identified by similarity to SP:P45794; match to protein family HMM PF01478; match to protein family HMM PF06750; prepilin peptidase 1330684 gspO 3899486 gspO Synechococcus sp. JA-3-3Ab prepilin peptidase YP_474759.1 1329842 D 321327 CDS YP_474760.1 86605997 3899487 complement(1330745..1334707) 1 NC_007775.1 catalyzes the formation of Mg-protoporphyrin IX from protoporphyrin IX and Mg(2+); first committed step of chlorophyll biosynthesis; magnesium chelatase subunit H 1334707 chlH 3899487 chlH Synechococcus sp. JA-3-3Ab magnesium chelatase subunit H YP_474760.1 1330745 R 321327 CDS YP_474761.1 86605998 3899489 complement(1336315..1338645) 1 NC_007775.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073; ATP-dependent DNA helicase PcrA 1338645 pcrA 3899489 pcrA Synechococcus sp. JA-3-3Ab ATP-dependent DNA helicase PcrA YP_474761.1 1336315 R 321327 CDS YP_474762.1 86605999 3899490 1338793..1339422 1 NC_007775.1 hypothetical protein 1339422 3899490 CYA_1322 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474762.1 1338793 D 321327 CDS YP_474763.1 86606000 3899491 1339537..1340181 1 NC_007775.1 hypothetical protein 1340181 3899491 CYA_1323 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474763.1 1339537 D 321327 CDS YP_474764.1 86606001 3899492 complement(1340188..1341045) 1 NC_007775.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 1341045 dapF 3899492 dapF Synechococcus sp. JA-3-3Ab diaminopimelate epimerase YP_474764.1 1340188 R 321327 CDS YP_474765.1 86606002 3899493 complement(1341084..1341215) 1 NC_007775.1 identified by match to protein family HMM PF02468; photosystem II reaction center protein N 1341215 psbN 3899493 psbN Synechococcus sp. JA-3-3Ab photosystem II reaction center protein N YP_474765.1 1341084 R 321327 CDS YP_474766.1 86606003 3899494 1341406..1341609 1 NC_007775.1 may be involved in regulating PSII assembly and/or stability; photosystem II reaction center protein H 1341609 psbH 3899494 psbH Synechococcus sp. JA-3-3Ab photosystem II reaction center protein H YP_474766.1 1341406 D 321327 CDS YP_474767.1 86606004 3899495 complement(1341633..1342853) 1 NC_007775.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 1342853 argJ 3899495 argJ Synechococcus sp. JA-3-3Ab bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_474767.1 1341633 R 321327 CDS YP_474768.1 86606005 3899496 1343098..1343904 1 NC_007775.1 Homologous to ATP-binding members of TCDB 3.A.1.16. The Nitrate/Nitrite/Cyanate Uptake Transporter (NitT) Family (Similar to 3.A.1.12 and 3.A.1.17) and 3.A.1.17. The Taurine Uptake Transporter (TauT) Family (Similar to 3.A.1.12 and 3.A.1.16); identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1343904 3899496 CYA_1328 Synechococcus sp. JA-3-3Ab ABC transporter ATP-binding protein YP_474768.1 1343098 D 321327 CDS YP_474769.1 86606006 3899497 1344208..1345005 1 NC_007775.1 Homologous to permease members of TCDB 3.A.1.17 The Taurine Uptake Transporter (TauT) Family (Similar to 3.A.1.12 and 3.A.1.16) and 3.A.1.16. The Nitrate/Nitrite/Cyanate Uptake Transporter (NitT) Family; identified by match to protein family HMM PF00528; ABC transporter permease 1345005 3899497 CYA_1329 Synechococcus sp. JA-3-3Ab ABC transporter permease YP_474769.1 1344208 D 321327 CDS YP_474770.1 86606007 3899499 complement(1345253..1345906) 1 NC_007775.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator 1345906 3899499 CYA_1331 Synechococcus sp. JA-3-3Ab Crp/FNR family transcriptional regulator YP_474770.1 1345253 R 321327 CDS YP_474771.1 86606008 3899500 complement(1346103..1347674) 1 NC_007775.1 identified by similarity to PIR:AC2404; hypothetical protein 1347674 3899500 CYA_1332 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474771.1 1346103 R 321327 CDS YP_474772.1 86606009 3899501 complement(1347730..1348299) 1 NC_007775.1 hypothetical protein 1348299 3899501 CYA_1333 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474772.1 1347730 R 321327 CDS YP_474773.1 86606010 3899502 complement(1348335..1349336) 1 NC_007775.1 identified by match to protein family HMM PF00107; zinc-binding dehydrogenase family oxidoreductase 1349336 3899502 CYA_1334 Synechococcus sp. JA-3-3Ab zinc-binding dehydrogenase family oxidoreductase YP_474773.1 1348335 R 321327 CDS YP_474774.1 86606011 3899541 1349497..1349640 1 NC_007775.1 hypothetical protein 1349640 3899541 CYA_1335 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474774.1 1349497 D 321327 CDS YP_474775.1 86606012 3899542 1349640..1350317 1 NC_007775.1 hypothetical protein 1350317 3899542 CYA_1336 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474775.1 1349640 D 321327 CDS YP_474776.1 86606013 3899543 complement(1350319..1350822) 1 NC_007775.1 identified by match to protein family HMM PF00502; match to protein family HMM TIGR01337; allophycocyanin subunit beta 1350822 apcB-1 3899543 apcB-1 Synechococcus sp. JA-3-3Ab allophycocyanin subunit beta YP_474776.1 1350319 R 321327 CDS YP_474777.1 86606014 3899544 complement(1351048..1351947) 1 NC_007775.1 identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431; tRNA pseudouridine synthase B 1351947 truB 3899544 truB Synechococcus sp. JA-3-3Ab tRNA pseudouridine synthase B YP_474777.1 1351048 R 321327 CDS YP_474778.1 86606015 3899545 1352022..1353053 1 NC_007775.1 identified by match to protein family HMM PF00892; hypothetical protein 1353053 3899545 CYA_1339 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474778.1 1352022 D 321327 CDS YP_474779.1 86606016 3899546 complement(1353066..1354061) 1 NC_007775.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1354061 trpS 3899546 trpS Synechococcus sp. JA-3-3Ab tryptophanyl-tRNA synthetase YP_474779.1 1353066 R 321327 CDS YP_474780.1 86606017 3899547 1354154..1354489 1 NC_007775.1 hypothetical protein 1354489 3899547 CYA_1341 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474780.1 1354154 D 321327 CDS YP_474781.1 86606018 3899548 1354567..1355088 1 NC_007775.1 identified by similarity to SP:Q8DIQ6; match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720; photosystem I assembly protein Ycf3 1355088 ycf3 3899548 ycf3 Synechococcus sp. JA-3-3Ab photosystem I assembly protein Ycf3 YP_474781.1 1354567 D 321327 CDS YP_474782.1 86606019 3899549 1355156..1355449 1 NC_007775.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 1355449 gatC 3899549 gatC Synechococcus sp. JA-3-3Ab aspartyl/glutamyl-tRNA amidotransferase subunit C YP_474782.1 1355156 D 321327 CDS YP_474783.1 86606020 3899552 complement(1356160..1358178) 1 NC_007775.1 catalyzes the formation of phenylacetaldehyde from 2-phenylethylamine; tyramine oxidase 1358178 tynA 3899552 tynA Synechococcus sp. JA-3-3Ab tyramine oxidase YP_474783.1 1356160 R 321327 CDS YP_474784.1 86606021 3899553 complement(1358712..1358843) 1 NC_007775.1 hypothetical protein 1358843 3899553 CYA_1347 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474784.1 1358712 R 321327 CDS YP_474785.1 86606022 3899554 1359018..1361663 1 NC_007775.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 1361663 3899554 CYA_1349 Synechococcus sp. JA-3-3Ab sensory box histidine kinase YP_474785.1 1359018 D 321327 CDS YP_474786.1 86606023 3899556 1361894..1362340 1 NC_007775.1 hypothetical protein 1362340 3899556 CYA_1350 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474786.1 1361894 D 321327 CDS YP_474787.1 86606024 3899557 complement(1362669..1362881) 1 NC_007775.1 hypothetical protein 1362881 3899557 CYA_1351 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474787.1 1362669 R 321327 CDS YP_474788.1 86606025 3899654 complement(1363311..1364600) 1 NC_007775.1 identified by similarity to SP:Q05865; match to protein family HMM TIGR01499; folylpolyglutamate synthase 1364600 folC 3899654 folC Synechococcus sp. JA-3-3Ab folylpolyglutamate synthase YP_474788.1 1363311 R 321327 CDS YP_474789.1 86606026 3899655 complement(1364668..1366251) 1 NC_007775.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 1366251 serA 3899655 serA Synechococcus sp. JA-3-3Ab D-3-phosphoglycerate dehydrogenase YP_474789.1 1364668 R 321327 CDS YP_474790.1 86606027 3899656 complement(1366455..1366745) 1 NC_007775.1 identified by similarity to PIR:S77467; hypothetical protein 1366745 3899656 CYA_1355 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474790.1 1366455 R 321327 CDS YP_474791.1 86606028 3899657 complement(1367432..1367542) 1 NC_007775.1 hypothetical protein 1367542 3899657 CYA_1356 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474791.1 1367432 R 321327 CDS YP_474792.1 86606029 3899659 1367795..1368193 1 NC_007775.1 identified by similarity to PIR:AD2038; ISSoc4, transposase orfA 1368193 3899659 CYA_1358 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfA YP_474792.1 1367795 D 321327 CDS YP_474793.1 86606030 3899660 1368175..1368741 1 NC_007775.1 identified by similarity to PIR:AI1851; ISSoc4, transposase orfB 1368741 3899660 CYA_1360 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfB YP_474793.1 1368175 D 321327 CDS YP_474794.1 86606031 3899661 complement(1368726..1369295) 1 NC_007775.1 ISSoc5, transposase, truncation 1369295 3899661 CYA_1359 Synechococcus sp. JA-3-3Ab ISSoc5, transposase, truncation YP_474794.1 1368726 R 321327 CDS YP_474795.1 86606032 3899662 1369435..1371735 1 NC_007775.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 1371735 purL 3899662 purL Synechococcus sp. JA-3-3Ab phosphoribosylformylglycinamidine synthase II YP_474795.1 1369435 D 321327 CDS YP_474796.1 86606033 3899663 complement(1371802..1373232) 1 NC_007775.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00085; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 1373232 trxB 3899663 trxB Synechococcus sp. JA-3-3Ab thioredoxin-disulfide reductase YP_474796.1 1371802 R 321327 CDS YP_474797.1 86606034 3899664 1373605..1375029 1 NC_007775.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 1375029 glnA 3899664 glnA Synechococcus sp. JA-3-3Ab glutamine synthetase, type I YP_474797.1 1373605 D 321327 CDS YP_474798.1 86606035 3899665 1375295..1375942 1 NC_007775.1 hypothetical protein 1375942 3899665 CYA_1364 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474798.1 1375295 D 321327 CDS YP_474799.1 86606036 3899666 1376021..1376737 1 NC_007775.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 1376737 3899666 CYA_1365 Synechococcus sp. JA-3-3Ab short chain dehydrogenase/reductase family oxidoreductase YP_474799.1 1376021 D 321327 CDS YP_474800.1 86606037 3899667 1376917..1378974 1 NC_007775.1 identified by match to protein family HMM PF00582; match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein 1378974 napA 3899667 napA Synechococcus sp. JA-3-3Ab monovalent cation:proton antiporter-2 (CPA2) family protein YP_474800.1 1376917 D 321327 CDS YP_474801.1 86606038 3899668 complement(1379067..1379558) 1 NC_007775.1 hypothetical protein 1379558 3899668 CYA_1367 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474801.1 1379067 R 321327 CDS YP_474802.1 86606039 3899669 complement(1379706..1380305) 1 NC_007775.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1380305 recR 3899669 recR Synechococcus sp. JA-3-3Ab recombination protein RecR YP_474802.1 1379706 R 321327 CDS YP_474803.1 86606040 3899670 complement(1380327..1380662) 1 NC_007775.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 1380662 3899670 CYA_1369 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474803.1 1380327 R 321327 CDS YP_474804.1 86606041 3899690 1380830..1381726 1 NC_007775.1 identified by similarity to SP:P10906; match to protein family HMM PF00528; sn-glycerol-3-phosphate ABC transporter, permease protein 1381726 3899690 CYA_1370 Synechococcus sp. JA-3-3Ab sn-glycerol-3-phosphate ABC transporter, permease protein YP_474804.1 1380830 D 321327 CDS YP_474805.1 86606042 3899691 1381763..1383271 1 NC_007775.1 identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1383271 ubiD 3899691 ubiD Synechococcus sp. JA-3-3Ab 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_474805.1 1381763 D 321327 CDS YP_474806.1 86606043 3899692 1383293..1384507 1 NC_007775.1 arsenite-antimonite (ArsAB) efflux family protein 1384507 3899692 CYA_1372 Synechococcus sp. JA-3-3Ab arsenite-antimonite (ArsAB) efflux family protein YP_474806.1 1383293 D 321327 CDS YP_474807.1 86606044 3899693 complement(1384524..1384889) 1 NC_007775.1 hypothetical protein 1384889 3899693 CYA_1373 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474807.1 1384524 R 321327 CDS YP_474808.1 86606045 3899694 1384977..1385594 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 1385594 3899694 CYA_1374 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_474808.1 1384977 D 321327 CDS YP_474809.1 86606046 3899695 1385449..1386729 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 1386729 3899695 CYA_1375 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_474809.1 1385449 D 321327 CDS YP_474810.1 86606047 3899696 1386920..1387207 1 NC_007775.1 hypothetical protein 1387207 3899696 CYA_1376 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474810.1 1386920 D 321327 CDS YP_474811.1 86606048 3899697 complement(1387257..1387394) 1 NC_007775.1 hypothetical protein 1387394 3899697 CYA_1377 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474811.1 1387257 R 321327 CDS YP_474812.1 86606049 3899698 1387369..1387680 1 NC_007775.1 hypothetical protein 1387680 3899698 CYA_1378 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474812.1 1387369 D 321327 CDS YP_474813.1 86606050 3899700 1388536..1389240 1 NC_007775.1 identified by match to protein family HMM PF00226; DnaJ domain-containing protein 1389240 3899700 CYA_1381 Synechococcus sp. JA-3-3Ab DnaJ domain-containing protein YP_474813.1 1388536 D 321327 CDS YP_474814.1 86606051 3899701 complement(1389237..1389761) 1 NC_007775.1 identified by similarity to GB:BAC09114.1; hypothetical protein 1389761 3899701 CYA_1380 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474814.1 1389237 R 321327 CDS YP_474815.1 86606052 3899702 complement(1389990..1390490) 1 NC_007775.1 hypothetical protein 1390490 3899702 CYA_1382 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474815.1 1389990 R 321327 CDS YP_474816.1 86606053 3899703 complement(1390490..1390939) 1 NC_007775.1 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 1390939 3899703 CYA_1383 Synechococcus sp. JA-3-3Ab FUR family transcriptional regulator YP_474816.1 1390490 R 321327 CDS YP_474817.1 86606054 3899704 complement(1390974..1391297) 1 NC_007775.1 identified by similarity to GB:BAC09596.1; hypothetical protein 1391297 3899704 CYA_1384 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474817.1 1390974 R 321327 CDS YP_474818.1 86606055 3899705 1391449..1392576 1 NC_007775.1 identified by match to protein family HMM PF02277; match to protein family HMM TIGR00303; hypothetical protein 1392576 3899705 CYA_1386 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474818.1 1391449 D 321327 CDS YP_474819.1 86606056 3899706 complement(1392525..1392830) 1 NC_007775.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor 1392830 clpS 3899706 clpS Synechococcus sp. JA-3-3Ab ATP-dependent Clp protease adaptor YP_474819.1 1392525 R 321327 CDS YP_474820.1 86606057 3899707 complement(1393034..1394890) 1 NC_007775.1 hypothetical protein 1394890 3899707 CYA_1387 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474820.1 1393034 R 321327 CDS YP_474821.1 86606058 3899708 complement(1394953..1395348) 1 NC_007775.1 hypothetical protein 1395348 3899708 CYA_1388 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474821.1 1394953 R 321327 CDS YP_474822.1 86606059 3899709 1395439..1396113 1 NC_007775.1 identified by match to protein family HMM PF01872; riboflavin biosynthesis protein RibD domain-containing protein 1396113 3899709 CYA_1389 Synechococcus sp. JA-3-3Ab riboflavin biosynthesis protein RibD domain-containing protein YP_474822.1 1395439 D 321327 CDS YP_474823.1 86606060 3899826 complement(1396327..1396509) 1 NC_007775.1 hypothetical protein 1396509 3899826 CYA_1390 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474823.1 1396327 R 321327 CDS YP_474824.1 86606061 3899827 1396721..1396921 1 NC_007775.1 identified by similarity to GB:BAC07925.1; hypothetical protein 1396921 3899827 CYA_1391 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474824.1 1396721 D 321327 CDS YP_474825.1 86606062 3899828 1397091..1398893 1 NC_007775.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; hypothetical protein 1398893 3899828 CYA_1393 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474825.1 1397091 D 321327 CDS YP_474826.1 86606063 3899829 complement(1398863..1399594) 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1399594 3899829 CYA_1392 Synechococcus sp. JA-3-3Ab DNA-binding response regulator YP_474826.1 1398863 R 321327 CDS YP_474827.1 86606064 3899830 complement(1400048..1400953) 1 NC_007775.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 1400953 recO 3899830 recO Synechococcus sp. JA-3-3Ab DNA repair protein RecO YP_474827.1 1400048 R 321327 CDS YP_474828.1 86606065 3899831 complement(1400950..1401651) 1 NC_007775.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1401651 deoC 3899831 deoC Synechococcus sp. JA-3-3Ab deoxyribose-phosphate aldolase YP_474828.1 1400950 R 321327 CDS YP_474829.1 86606066 3899832 1401835..1402206 1 NC_007775.1 identified by similarity to GB:BAC08489.1; hypothetical protein 1402206 3899832 CYA_1396 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474829.1 1401835 D 321327 CDS YP_474830.1 86606067 3899833 1402203..1402730 1 NC_007775.1 hypothetical protein 1402730 3899833 CYA_1397 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474830.1 1402203 D 321327 CDS YP_474831.1 86606068 3899834 complement(1402734..1404284) 1 NC_007775.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1404284 metG 3899834 metG Synechococcus sp. JA-3-3Ab methionyl-tRNA synthetase YP_474831.1 1402734 R 321327 CDS YP_474832.1 86606069 3899835 1404262..1406232 1 NC_007775.1 hypothetical protein 1406232 3899835 CYA_1399 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474832.1 1404262 D 321327 CDS YP_474833.1 86606070 3899836 1406262..1406588 1 NC_007775.1 hypothetical protein 1406588 3899836 CYA_1400 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474833.1 1406262 D 321327 CDS YP_474834.1 86606071 3899837 1406653..1407894 1 NC_007775.1 identified by match to protein family HMM PF05673; hypothetical protein 1407894 3899837 CYA_1401 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474834.1 1406653 D 321327 CDS YP_474835.1 86606072 3899838 complement(1407996..1408382) 1 NC_007775.1 hypothetical protein 1408382 3899838 CYA_1402 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474835.1 1407996 R 321327 CDS YP_474836.1 86606073 3899839 1408487..1409005 1 NC_007775.1 Rieske protein, with cytochrome b6, cytochrome f, and subunit IV, makes up the large subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I; cytochrome b6-f complex iron-sulfur subunit 1409005 petC 3899839 petC Synechococcus sp. JA-3-3Ab cytochrome b6-f complex iron-sulfur subunit YP_474836.1 1408487 D 321327 CDS YP_474837.1 86606074 3899840 1409483..1410466 1 NC_007775.1 cytochrome f, with cytochrome b6, subunit IV, and the Rieske protein, makes up the large subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I; apocytochrome f 1410466 petA 3899840 petA Synechococcus sp. JA-3-3Ab apocytochrome f YP_474837.1 1409483 D 321327 CDS YP_474838.1 86606075 3899841 complement(1410528..1411340) 1 NC_007775.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; PhzF family phenazine biosynthesis protein 1411340 3899841 CYA_1405 Synechococcus sp. JA-3-3Ab PhzF family phenazine biosynthesis protein YP_474838.1 1410528 R 321327 CDS YP_474839.1 86606076 3899842 1411585..1411896 1 NC_007775.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 1411896 groES 3899842 groES Synechococcus sp. JA-3-3Ab co-chaperonin GroES YP_474839.1 1411585 D 321327 CDS YP_474840.1 86606077 3899843 1411963..1413597 1 NC_007775.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 1413597 groEL 3899843 groEL Synechococcus sp. JA-3-3Ab chaperonin GroEL YP_474840.1 1411963 D 321327 CDS YP_474841.1 86606078 3899844 1413771..1414598 1 NC_007775.1 identified by similarity to PIR:C70708; hypothetical protein 1414598 3899844 CYA_1408 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474841.1 1413771 D 321327 CDS YP_474842.1 86606079 3898915 1414754..1415917 1 NC_007775.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase 1415917 3898915 CYA_1409 Synechococcus sp. JA-3-3Ab inosine 5-monophosphate dehydrogenase YP_474842.1 1414754 D 321327 CDS YP_474843.1 86606080 3898917 1416275..1417909 1 NC_007775.1 identified by match to protein family HMM PF00395; S-layer protein 1417909 3898917 CYA_1411 Synechococcus sp. JA-3-3Ab S-layer protein YP_474843.1 1416275 D 321327 CDS YP_474844.1 86606081 3898918 1418354..1419934 1 NC_007775.1 identified by match to protein family HMM PF00395; S-layer protein 1419934 3898918 CYA_1412 Synechococcus sp. JA-3-3Ab S-layer protein YP_474844.1 1418354 D 321327 CDS YP_474845.1 86606082 3898919 complement(1420078..1420917) 1 NC_007775.1 hypothetical protein 1420917 3898919 CYA_1413 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474845.1 1420078 R 321327 CDS YP_474846.1 86606083 3898920 complement(1420985..1422682) 1 NC_007775.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; SulP family sulfate permease 1422682 3898920 CYA_1414 Synechococcus sp. JA-3-3Ab SulP family sulfate permease YP_474846.1 1420985 R 321327 CDS YP_474847.1 86606084 3898921 1422999..1425539 1 NC_007775.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1425539 gyrA 3898921 gyrA Synechococcus sp. JA-3-3Ab DNA gyrase subunit A YP_474847.1 1422999 D 321327 CDS YP_474848.1 86606085 3898922 1425730..1426125 1 NC_007775.1 identified by similarity to GB:CAE19064.1; hypothetical protein 1426125 3898922 CYA_1416 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474848.1 1425730 D 321327 CDS YP_474849.1 86606086 3898923 1426263..1427396 1 NC_007775.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 1427396 3898923 CYA_1417 Synechococcus sp. JA-3-3Ab glycerate kinase YP_474849.1 1426263 D 321327 CDS YP_474850.1 86606087 3898924 1427568..1427882 1 NC_007775.1 PsbW; part of the phosystem II reaction center; photosystem II reaction center protein Psb28 1427882 psbW 3898924 psbW Synechococcus sp. JA-3-3Ab photosystem II reaction center protein Psb28 YP_474850.1 1427568 D 321327 CDS YP_474851.1 86606088 3898925 complement(1427888..1429417) 1 NC_007775.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1429417 gatA 3898925 gatA Synechococcus sp. JA-3-3Ab aspartyl/glutamyl-tRNA amidotransferase subunit A YP_474851.1 1427888 R 321327 CDS YP_474852.1 86606089 3898926 complement(1429598..1429915) 1 NC_007775.1 hypothetical protein 1429915 3898926 CYA_1420 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474852.1 1429598 R 321327 CDS YP_474853.1 86606090 3898927 complement(1430023..1430361) 1 NC_007775.1 hypothetical protein 1430361 3898927 CYA_1421 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474853.1 1430023 R 321327 CDS YP_474854.1 86606091 3898929 complement(1430501..1431175) 1 NC_007775.1 identified by similarity to PIR:AD2438; match to protein family HMM PF05685; hypothetical protein 1431175 3898929 CYA_1423 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474854.1 1430501 R 321327 CDS YP_474855.1 86606092 3898930 complement(1431242..1431622) 1 NC_007775.1 hypothetical protein 1431622 3898930 CYA_1424 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474855.1 1431242 R 321327 CDS YP_474856.1 86606093 3898931 complement(1431698..1431787) 1 NC_007775.1 hypothetical protein 1431787 3898931 CYA_1425 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474856.1 1431698 R 321327 CDS YP_474857.1 86606094 3898932 complement(1431851..1432150) 1 NC_007775.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008; ferredoxin, 2Fe-2S 1432150 3898932 CYA_1426 Synechococcus sp. JA-3-3Ab ferredoxin, 2Fe-2S YP_474857.1 1431851 R 321327 CDS YP_474858.1 86606095 3898970 1432352..1432498 1 NC_007775.1 hypothetical protein 1432498 3898970 CYA_1427 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474858.1 1432352 D 321327 CDS YP_474859.1 86606096 3898971 1432665..1434956 1 NC_007775.1 lipoprotein 1434956 3898971 CYA_1428 Synechococcus sp. JA-3-3Ab lipoprotein YP_474859.1 1432665 D 321327 CDS YP_474860.1 86606097 3898972 1435208..1437325 1 NC_007775.1 lipoprotein 1437325 3898972 CYA_1430 Synechococcus sp. JA-3-3Ab lipoprotein YP_474860.1 1435208 D 321327 CDS YP_474861.1 86606098 3898973 complement(1437306..1437467) 1 NC_007775.1 hypothetical protein 1437467 3898973 CYA_1429 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474861.1 1437306 R 321327 CDS YP_474862.1 86606099 3898974 1437521..1438027 1 NC_007775.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 1438027 3898974 CYA_1431 Synechococcus sp. JA-3-3Ab pentapeptide repeat-containing protein YP_474862.1 1437521 D 321327 CDS YP_474863.1 86606100 3898975 1438097..1438597 1 NC_007775.1 hypothetical protein 1438597 3898975 CYA_1432 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474863.1 1438097 D 321327 CDS YP_474864.1 86606101 3898976 1438736..1439401 1 NC_007775.1 lipoprotein 1439401 3898976 CYA_1433 Synechococcus sp. JA-3-3Ab lipoprotein YP_474864.1 1438736 D 321327 CDS YP_474865.1 86606102 3898977 1439403..1439495 1 NC_007775.1 hypothetical protein 1439495 3898977 CYA_1434 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474865.1 1439403 D 321327 CDS YP_474866.1 86606103 3898978 1439922..1441664 1 NC_007775.1 lipoprotein 1441664 3898978 CYA_1435 Synechococcus sp. JA-3-3Ab lipoprotein YP_474866.1 1439922 D 321327 CDS YP_474867.1 86606104 3898979 complement(1441806..1443266) 1 NC_007775.1 M8 family peptidase 1443266 3898979 CYA_1436 Synechococcus sp. JA-3-3Ab M8 family peptidase YP_474867.1 1441806 R 321327 CDS YP_474868.1 86606105 3898980 1443425..1444693 1 NC_007775.1 hypothetical protein 1444693 3898980 CYA_1437 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474868.1 1443425 D 321327 CDS YP_474869.1 86606106 3898981 complement(1445169..1446401) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 1446401 3898981 CYA_1438 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_474869.1 1445169 R 321327 CDS YP_474870.1 86606107 3898982 complement(1446256..1446849) 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 1446849 3898982 CYA_1439 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_474870.1 1446256 R 321327 CDS YP_474871.1 86606108 3898983 complement(1446917..1447375) 1 NC_007775.1 ISSoc14, transposase, truncation 1447375 3898983 CYA_1440 Synechococcus sp. JA-3-3Ab ISSoc14, transposase, truncation YP_474871.1 1446917 R 321327 CDS YP_474872.1 86606109 3898984 complement(1447464..1448585) 1 NC_007775.1 identified by match to protein family HMM PF00005; carbohydrate ABC transporter ATP-binding protein 1448585 3898984 CYA_1441 Synechococcus sp. JA-3-3Ab carbohydrate ABC transporter ATP-binding protein YP_474872.1 1447464 R 321327 CDS YP_474873.1 86606110 3898985 complement(1448815..1449255) 1 NC_007775.1 identified by similarity to SP:Q06823; match to protein family HMM PF00011; small heat shock protein (HSP20) family protein 1449255 3898985 CYA_1442 Synechococcus sp. JA-3-3Ab small heat shock protein (HSP20) family protein YP_474873.1 1448815 R 321327 CDS YP_474874.1 86606111 3898986 complement(1449434..1449745) 1 NC_007775.1 identified by similarity to PIR:AI1993; hypothetical protein 1449745 3898986 CYA_1443 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474874.1 1449434 R 321327 CDS YP_474875.1 86606112 3898987 complement(1449821..1452454) 1 NC_007775.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 1452454 acnB 3898987 acnB Synechococcus sp. JA-3-3Ab bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_474875.1 1449821 R 321327 CDS YP_474876.1 86606113 3898988 complement(1452529..1453614) 1 NC_007775.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1453614 prfA 3898988 prfA Synechococcus sp. JA-3-3Ab peptide chain release factor 1 YP_474876.1 1452529 R 321327 CDS YP_474877.1 86606114 3899125 complement(1453685..1453906) 1 NC_007775.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 1453906 rpmE 3899125 rpmE Synechococcus sp. JA-3-3Ab 50S ribosomal protein L31 YP_474877.1 1453685 R 321327 CDS YP_474878.1 86606115 3899126 complement(1453984..1454397) 1 NC_007775.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 1454397 rpsI 3899126 rpsI Synechococcus sp. JA-3-3Ab 30S ribosomal protein S9 YP_474878.1 1453984 R 321327 CDS YP_474879.1 86606116 3899127 complement(1454394..1454849) 1 NC_007775.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1454849 rplM 3899127 rplM Synechococcus sp. JA-3-3Ab 50S ribosomal protein L13 YP_474879.1 1454394 R 321327 CDS YP_474880.1 86606117 3899128 complement(1454899..1455762) 1 NC_007775.1 identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071; tRNA pseudouridine synthase A 1455762 truA 3899128 truA Synechococcus sp. JA-3-3Ab tRNA pseudouridine synthase A YP_474880.1 1454899 R 321327 CDS YP_474881.1 86606118 3899129 complement(1455768..1456118) 1 NC_007775.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 1456118 rplQ 3899129 rplQ Synechococcus sp. JA-3-3Ab 50S ribosomal protein L17 YP_474881.1 1455768 R 321327 CDS YP_474882.1 86606119 3899130 complement(1456191..1457186) 1 NC_007775.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1457186 rpoA 3899130 rpoA Synechococcus sp. JA-3-3Ab DNA-directed RNA polymerase subunit alpha YP_474882.1 1456191 R 321327 CDS YP_474883.1 86606120 3899131 complement(1457309..1457695) 1 NC_007775.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1457695 rpsK 3899131 rpsK Synechococcus sp. JA-3-3Ab 30S ribosomal protein S11 YP_474883.1 1457309 R 321327 CDS YP_474884.1 86606121 3899132 complement(1457784..1458167) 1 NC_007775.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1458167 rpsM 3899132 rpsM Synechococcus sp. JA-3-3Ab 30S ribosomal protein S13 YP_474884.1 1457784 R 321327 CDS YP_474885.1 86606122 3899133 complement(1458381..1458497) 1 NC_007775.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 1458497 rpmJ 3899133 rpmJ Synechococcus sp. JA-3-3Ab 50S ribosomal protein L36 YP_474885.1 1458381 R 321327 CDS YP_474886.1 86606123 3899134 1458692..1460623 1 NC_007775.1 identified by similarity to GB:BAC90967.1; hypothetical protein 1460623 3899134 CYA_1455 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474886.1 1458692 D 321327 CDS YP_474887.1 86606124 3899135 1460682..1461719 1 NC_007775.1 hypothetical protein 1461719 3899135 CYA_1456 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474887.1 1460682 D 321327 CDS YP_474888.1 86606125 3899136 1461999..1463558 1 NC_007775.1 identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 1463558 3899136 CYA_1457 Synechococcus sp. JA-3-3Ab dolichyl-phosphate-mannose-protein mannosyltransferase YP_474888.1 1461999 D 321327 CDS YP_474889.1 86606126 3899137 1463667..1464716 1 NC_007775.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase, NAD-binding 1464716 3899137 CYA_1458 Synechococcus sp. JA-3-3Ab oxidoreductase, NAD-binding YP_474889.1 1463667 D 321327 CDS YP_474890.1 86606127 3899138 1464769..1465722 1 NC_007775.1 identified by match to protein family HMM PF01925; hypothetical protein 1465722 3899138 CYA_1459 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474890.1 1464769 D 321327 CDS YP_474891.1 86606128 3899139 complement(1465840..1466739) 1 NC_007775.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; prephenate dehydratase 1466739 3899139 CYA_1460 Synechococcus sp. JA-3-3Ab prephenate dehydratase YP_474891.1 1465840 R 321327 CDS YP_474892.1 86606129 3899140 complement(1466743..1467078) 1 NC_007775.1 identified by similarity to SP:P39146; competence protein 1467078 3899140 CYA_1461 Synechococcus sp. JA-3-3Ab competence protein YP_474892.1 1466743 R 321327 CDS YP_474893.1 86606130 3899141 complement(1467548..1468837) 1 NC_007775.1 identified by similarity to SP:P54918; match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase 1468837 alr 3899141 alr Synechococcus sp. JA-3-3Ab alanine racemase YP_474893.1 1467548 R 321327 CDS YP_474894.1 86606131 3899142 complement(1468878..1469918) 1 NC_007775.1 identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 36K type 1469918 sppA-2 3899142 sppA-2 Synechococcus sp. JA-3-3Ab signal peptide peptidase SppA, 36K type YP_474894.1 1468878 R 321327 CDS YP_474895.1 86606132 3899164 1470893..1472410 1 NC_007775.1 hypothetical protein 1472410 3899164 CYA_1465 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474895.1 1470893 D 321327 CDS YP_474896.1 86606133 3899165 1472452..1474845 1 NC_007775.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1474845 priA 3899165 priA Synechococcus sp. JA-3-3Ab primosome assembly protein PriA YP_474896.1 1472452 D 321327 CDS YP_474897.1 86606134 3899166 1475005..1476111 1 NC_007775.1 identified by match to protein family HMM PF00180; isopropylmalate/isohomocitrate dehydrogenase family protein 1476111 3899166 CYA_1467 Synechococcus sp. JA-3-3Ab isopropylmalate/isohomocitrate dehydrogenase family protein YP_474897.1 1475005 D 321327 CDS YP_474898.1 86606135 3899167 complement(1476143..1477069) 1 NC_007775.1 identified by match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase family protein 1477069 3899167 CYA_1468 Synechococcus sp. JA-3-3Ab D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_474898.1 1476143 R 321327 CDS YP_474899.1 86606136 3899168 1477084..1477329 1 NC_007775.1 hypothetical protein 1477329 3899168 CYA_1469 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474899.1 1477084 D 321327 CDS YP_474900.1 86606137 3899169 1477378..1478613 1 NC_007775.1 hypothetical protein 1478613 3899169 CYA_1470 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474900.1 1477378 D 321327 CDS YP_474901.1 86606138 3899170 complement(1478619..1479899) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 1479899 3899170 CYA_1471 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_474901.1 1478619 R 321327 CDS YP_474902.1 86606139 3899171 complement(1479754..1480371) 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 1480371 3899171 CYA_1472 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_474902.1 1479754 R 321327 CDS YP_474903.1 86606140 3899172 1481805..1482455 1 NC_007775.1 cob(I)alamin adenosyltransferase 1482455 3899172 CYA_1473 Synechococcus sp. JA-3-3Ab cob(I)alamin adenosyltransferase YP_474903.1 1481805 D 321327 CDS YP_474904.1 86606141 3899173 1482540..1483133 1 NC_007775.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1483133 dcd 3899173 dcd Synechococcus sp. JA-3-3Ab deoxycytidine triphosphate deaminase YP_474904.1 1482540 D 321327 CDS YP_474905.1 86606142 3899174 1483225..1484415 1 NC_007775.1 identified by match to protein family HMM PF02547; match to protein family HMM TIGR00113; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1484415 queA 3899174 queA Synechococcus sp. JA-3-3Ab S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_474905.1 1483225 D 321327 CDS YP_474906.1 86606143 3899175 complement(1484412..1485188) 1 NC_007775.1 identified by match to protein family HMM PF00702; hydrolase, haloacid dehalogenase family protein 1485188 3899175 CYA_1475 Synechococcus sp. JA-3-3Ab hydrolase, haloacid dehalogenase family protein YP_474906.1 1484412 R 321327 CDS YP_474907.1 86606144 3899176 complement(1485217..1486212) 1 NC_007775.1 identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 1486212 3899176 CYA_1477 Synechococcus sp. JA-3-3Ab aldo/keto reductase family oxidoreductase YP_474907.1 1485217 R 321327 CDS YP_474908.1 86606145 3899177 1486245..1486910 1 NC_007775.1 hypothetical protein 1486910 3899177 CYA_1478 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474908.1 1486245 D 321327 CDS YP_474909.1 86606146 3899178 1486962..1488596 1 NC_007775.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1488596 pyrG 3899178 pyrG Synechococcus sp. JA-3-3Ab CTP synthetase YP_474909.1 1486962 D 321327 CDS YP_474910.1 86606147 3899179 complement(1488628..1488780) 1 NC_007775.1 hypothetical protein 1488780 3899179 CYA_1480 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474910.1 1488628 R 321327 CDS YP_474911.1 86606148 3899180 1488848..1489324 1 NC_007775.1 hypothetical protein 1489324 3899180 CYA_1481 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474911.1 1488848 D 321327 CDS YP_474912.1 86606149 3899181 1489545..1490024 1 NC_007775.1 identified by match to protein family HMM PF00160; cyclophilin-type peptidylprolyl cis-trans isomerase 1490024 3899181 CYA_1482 Synechococcus sp. JA-3-3Ab cyclophilin-type peptidylprolyl cis-trans isomerase YP_474912.1 1489545 D 321327 CDS YP_474913.1 86606150 3899182 1490111..1491406 1 NC_007775.1 identified by match to protein family HMM PF00702; match to protein family HMM PF00741; HAD hydrolase-like protein/gas vesicle protein K 1491406 gvpK 3899182 gvpK Synechococcus sp. JA-3-3Ab HAD hydrolase-like protein/gas vesicle protein K YP_474913.1 1490111 D 321327 CDS YP_474914.1 86606151 3899183 1491527..1493104 1 NC_007775.1 transfers electrons from NAD(P)H to quinons in the respiratory chain; NAD(P)H-quinone oxidoreductase subunit 2 1493104 3899183 CYA_1484 Synechococcus sp. JA-3-3Ab NAD(P)H-quinone oxidoreductase subunit 2 YP_474914.1 1491527 D 321327 CDS YP_474915.1 86606152 3899184 complement(1493271..1493840) 1 NC_007775.1 required for the assembly of photosystem I complex; photosystem I assembly protein Ycf4 1493840 ycf4 3899184 ycf4 Synechococcus sp. JA-3-3Ab photosystem I assembly protein Ycf4 YP_474915.1 1493271 R 321327 CDS YP_474916.1 86606153 3899185 complement(1494061..1495182) 1 NC_007775.1 identified by match to protein family HMM PF00395; S-layer protein 1495182 3899185 CYA_1486 Synechococcus sp. JA-3-3Ab S-layer protein YP_474916.1 1494061 R 321327 CDS YP_474917.1 86606154 3899186 complement(1495170..1495484) 1 NC_007775.1 hypothetical protein 1495484 3899186 CYA_1487 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474917.1 1495170 R 321327 CDS YP_474918.1 86606155 3899187 complement(1495536..1496153) 1 NC_007775.1 hypothetical protein 1496153 3899187 CYA_1488 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474918.1 1495536 R 321327 CDS YP_474919.1 86606156 3899188 complement(1496190..1496693) 1 NC_007775.1 identified by similarity to GB:BAC89679.1; hypothetical protein 1496693 3899188 CYA_1489 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474919.1 1496190 R 321327 CDS YP_474920.1 86606157 3899189 complement(1496753..1497415) 1 NC_007775.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1497415 3899189 CYA_1490 Synechococcus sp. JA-3-3Ab RNA polymerase sigma factor RpoE YP_474920.1 1496753 R 321327 CDS YP_474921.1 86606158 3899190 1497684..1498391 1 NC_007775.1 identified by match to protein family HMM PF00027; cyclic nucleotide-binding protein 1498391 3899190 CYA_1491 Synechococcus sp. JA-3-3Ab cyclic nucleotide-binding protein YP_474921.1 1497684 D 321327 CDS YP_474922.1 86606159 3899191 1498421..1498915 1 NC_007775.1 identified by similarity to GB:BAC90187.1; match to protein family HMM PF04248; hypothetical protein 1498915 3899191 CYA_1492 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474922.1 1498421 D 321327 CDS YP_474923.1 86606160 3899192 1499032..1501002 1 NC_007775.1 identified by match to protein family HMM PF00226; match to protein family HMM PF07721; DnaJ domain-containing protein 1501002 3899192 CYA_1493 Synechococcus sp. JA-3-3Ab DnaJ domain-containing protein YP_474923.1 1499032 D 321327 CDS YP_474924.1 86606161 3899193 1501066..1502028 1 NC_007775.1 identified by match to protein family HMM PF02361; transporter 1502028 3899193 CYA_1495 Synechococcus sp. JA-3-3Ab transporter YP_474924.1 1501066 D 321327 CDS YP_474925.1 86606162 3899194 complement(1501966..1504893) 1 NC_007775.1 identified by match to protein family HMM PF01590; match to protein family HMM PF02518; sensor histidine kinase 1504893 3899194 CYA_1494 Synechococcus sp. JA-3-3Ab sensor histidine kinase YP_474925.1 1501966 R 321327 CDS YP_474926.1 86606163 3899195 complement(1505050..1505595) 1 NC_007775.1 identified by match to protein family HMM PF03358; NADPH-dependent FMN reductase 1505595 3899195 CYA_1496 Synechococcus sp. JA-3-3Ab NADPH-dependent FMN reductase YP_474926.1 1505050 R 321327 CDS YP_474927.1 86606164 3899196 complement(1505724..1508000) 1 NC_007775.1 identified by similarity to GB:CAE28953.1; hypothetical protein 1508000 3899196 CYA_1497 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474927.1 1505724 R 321327 CDS YP_474928.1 86606165 3899197 complement(1508120..1508881) 1 NC_007775.1 hypothetical protein 1508881 3899197 CYA_1498 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474928.1 1508120 R 321327 CDS YP_474929.1 86606166 3899198 complement(1508954..1509067) 1 NC_007775.1 hypothetical protein 1509067 3899198 CYA_1499 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474929.1 1508954 R 321327 CDS YP_474930.1 86606167 3899199 1509142..1510221 1 NC_007775.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 1510221 fba 3899199 fba Synechococcus sp. JA-3-3Ab fructose-1,6-bisphosphate aldolase YP_474930.1 1509142 D 321327 CDS YP_474931.1 86606168 3899200 complement(1510331..1510564) 1 NC_007775.1 hypothetical protein 1510564 3899200 CYA_1501 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474931.1 1510331 R 321327 CDS YP_474932.1 86606169 3899201 complement(1510605..1510952) 1 NC_007775.1 hypothetical protein 1510952 3899201 CYA_1502 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474932.1 1510605 R 321327 CDS YP_474933.1 86606170 3899202 complement(1511145..1511633) 1 NC_007775.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994; NifU family SUF system FeS assembly protein 1511633 3899202 CYA_1503 Synechococcus sp. JA-3-3Ab NifU family SUF system FeS assembly protein YP_474933.1 1511145 R 321327 CDS YP_474934.1 86606171 3899203 complement(1511999..1512763) 1 NC_007775.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase 1512763 cobM 3899203 cobM Synechococcus sp. JA-3-3Ab precorrin-4 C(11)-methyltransferase YP_474934.1 1511999 R 321327 CDS YP_474935.1 86606172 3899205 complement(1514374..1515081) 1 NC_007775.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1515081 ispD 3899205 ispD Synechococcus sp. JA-3-3Ab 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_474935.1 1514374 R 321327 CDS YP_474936.1 86606173 3899206 complement(1515231..1516637) 1 NC_007775.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 1516637 amt 3899206 amt Synechococcus sp. JA-3-3Ab ammonium transporter YP_474936.1 1515231 R 321327 CDS YP_474937.1 86606174 3899207 complement(1516789..1517127) 1 NC_007775.1 identified by similarity to SP:P80016; match to protein family HMM PF00543; nitrogen regulatory protein P-II 1517127 glnB 3899207 glnB Synechococcus sp. JA-3-3Ab nitrogen regulatory protein P-II YP_474937.1 1516789 R 321327 CDS YP_474938.1 86606175 3899208 complement(1517279..1518694) 1 NC_007775.1 identified by match to protein family HMM PF04932; inorganic carbon transporter/0-antigen polymerase (ICT/OAP) family protein 1518694 3899208 CYA_1509 Synechococcus sp. JA-3-3Ab inorganic carbon transporter/0-antigen polymerase (ICT/OAP) family protein YP_474938.1 1517279 R 321327 CDS YP_474939.1 86606176 3899209 complement(1518855..1519064) 1 NC_007775.1 hypothetical protein 1519064 3899209 CYA_1510 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474939.1 1518855 R 321327 CDS YP_474940.1 86606177 3899210 1519335..1520312 1 NC_007775.1 required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 1520312 holA 3899210 holA Synechococcus sp. JA-3-3Ab DNA polymerase III subunit delta YP_474940.1 1519335 D 321327 CDS YP_474941.1 86606178 3899211 complement(1520399..1521010) 1 NC_007775.1 identified by similarity to SP:Q06475; cytochrome c oxidase subunit III 1521010 ctaE 3899211 ctaE Synechococcus sp. JA-3-3Ab cytochrome c oxidase subunit III YP_474941.1 1520399 R 321327 CDS YP_474942.1 86606179 3899212 complement(1521127..1522836) 1 NC_007775.1 identified by similarity to SP:Q06473; match to protein family HMM PF00115; cytochrome c oxidase subunit I 1522836 ctaD 3899212 ctaD Synechococcus sp. JA-3-3Ab cytochrome c oxidase subunit I YP_474942.1 1521127 R 321327 CDS YP_474943.1 86606180 3899213 complement(1522833..1523861) 1 NC_007775.1 identified by similarity to SP:P98054; match to protein family HMM PF00116; match to protein family HMM PF02790; cytochrome c oxidase subunit II 1523861 ctaC 3899213 ctaC Synechococcus sp. JA-3-3Ab cytochrome c oxidase subunit II YP_474943.1 1522833 R 321327 CDS YP_474944.1 86606181 3899214 1524408..1525343 1 NC_007775.1 identified by match to protein family HMM PF02628; cytochrome oxidase assembly protein 1525343 3899214 CYA_1515 Synechococcus sp. JA-3-3Ab cytochrome oxidase assembly protein YP_474944.1 1524408 D 321327 CDS YP_474945.1 86606182 3899215 1525396..1526391 1 NC_007775.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 1526391 cyoE 3899215 cyoE Synechococcus sp. JA-3-3Ab protoheme IX farnesyltransferase YP_474945.1 1525396 D 321327 CDS YP_474946.1 86606183 3899217 1527847..1529391 1 NC_007775.1 identified by match to protein family HMM PF02321; outer membrane efflux family protein 1529391 3899217 CYA_1518 Synechococcus sp. JA-3-3Ab outer membrane efflux family protein YP_474946.1 1527847 D 321327 CDS YP_474947.1 86606184 3899218 complement(1529634..1530245) 1 NC_007775.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1530245 rpsD 3899218 rpsD Synechococcus sp. JA-3-3Ab 30S ribosomal protein S4 YP_474947.1 1529634 R 321327 CDS YP_474948.1 86606185 3899219 complement(1530410..1531546) 1 NC_007775.1 identified by match to protein family HMM PF01370; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase 1531546 gmd 3899219 gmd Synechococcus sp. JA-3-3Ab GDP-mannose 4,6-dehydratase YP_474948.1 1530410 R 321327 CDS YP_474949.1 86606186 3899220 complement(1531693..1533054) 1 NC_007775.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1533054 3899220 CYA_1521 Synechococcus sp. JA-3-3Ab nicotinate phosphoribosyltransferase YP_474949.1 1531693 R 321327 CDS YP_474950.1 86606187 3899221 1533207..1534283 1 NC_007775.1 identified by similarity to PIR:AB2451; hypothetical protein 1534283 3899221 CYA_1522 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474950.1 1533207 D 321327 CDS YP_474951.1 86606188 3897129 1534364..1535596 1 NC_007775.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit 1535596 hisZ 3897129 hisZ Synechococcus sp. JA-3-3Ab ATP phosphoribosyltransferase regulatory subunit YP_474951.1 1534364 D 321327 CDS YP_474952.1 86606189 3897130 complement(1535547..1537475) 1 NC_007775.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 1537475 gyrB 3897130 gyrB Synechococcus sp. JA-3-3Ab DNA gyrase subunit B YP_474952.1 1535547 R 321327 CDS YP_474953.1 86606190 3897131 complement(1537657..1538217) 1 NC_007775.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1538217 rimM 3897131 rimM Synechococcus sp. JA-3-3Ab 16S rRNA-processing protein RimM YP_474953.1 1537657 R 321327 CDS YP_474954.1 86606191 3897132 complement(1538229..1539197) 1 NC_007775.1 identified by match to protein family HMM PF01145; HflC/HflK family protein 1539197 3897132 CYA_1526 Synechococcus sp. JA-3-3Ab HflC/HflK family protein YP_474954.1 1538229 R 321327 CDS YP_474955.1 86606192 3897133 1539214..1539321 1 NC_007775.1 hypothetical protein 1539321 3897133 CYA_1527 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474955.1 1539214 D 321327 CDS YP_474956.1 86606193 3897134 1539402..1540394 1 NC_007775.1 identified by match to protein family HMM PF01266; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 1540394 3897134 CYA_1528 Synechococcus sp. JA-3-3Ab pyridine nucleotide-disulfide oxidoreductase YP_474956.1 1539402 D 321327 CDS YP_474957.1 86606194 3897135 1540474..1541559 1 NC_007775.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 1541559 3897135 CYA_1529 Synechococcus sp. JA-3-3Ab polysaccharide deacetylase family protein YP_474957.1 1540474 D 321327 CDS YP_474958.1 86606195 3897136 1541632..1542297 1 NC_007775.1 hypothetical protein 1542297 3897136 CYA_1530 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474958.1 1541632 D 321327 CDS YP_474959.1 86606196 3897137 complement(1542429..1543451) 1 NC_007775.1 identified by match to protein family HMM PF01551; M23B family peptidase 1543451 3897137 CYA_1531 Synechococcus sp. JA-3-3Ab M23B family peptidase YP_474959.1 1542429 R 321327 CDS YP_474960.1 86606197 3897138 1543567..1544442 1 NC_007775.1 identified by match to protein family HMM PF04240; hypothetical protein 1544442 3897138 CYA_1532 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474960.1 1543567 D 321327 CDS YP_474961.1 86606198 3897139 complement(1544448..1544918) 1 NC_007775.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1544918 lspA 3897139 lspA Synechococcus sp. JA-3-3Ab lipoprotein signal peptidase YP_474961.1 1544448 R 321327 CDS YP_474962.1 86606199 3897140 complement(1545156..1545380) 1 NC_007775.1 hypothetical protein 1545380 3897140 CYA_1534 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474962.1 1545156 R 321327 CDS YP_474963.1 86606200 3897141 complement(1545458..1545988) 1 NC_007775.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 1545988 cysC 3897141 cysC Synechococcus sp. JA-3-3Ab adenylylsulfate kinase YP_474963.1 1545458 R 321327 CDS YP_474964.1 86606201 3897142 1546079..1547335 1 NC_007775.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 1547335 argD 3897142 argD Synechococcus sp. JA-3-3Ab acetylornithine aminotransferase YP_474964.1 1546079 D 321327 CDS YP_474965.1 86606202 3897143 complement(1547332..1547745) 1 NC_007775.1 hypothetical protein 1547745 3897143 CYA_1536 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474965.1 1547332 R 321327 CDS YP_474966.1 86606203 3897144 1547900..1548724 1 NC_007775.1 identified by match to protein family HMM PF02633; creatininase 1548724 3897144 CYA_1538 Synechococcus sp. JA-3-3Ab creatininase YP_474966.1 1547900 D 321327 CDS YP_474967.1 86606204 3897145 1548851..1549513 1 NC_007775.1 identified by match to protein family HMM PF05685; hypothetical protein 1549513 3897145 CYA_1539 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474967.1 1548851 D 321327 CDS YP_474968.1 86606205 3897146 1549537..1550202 1 NC_007775.1 identified by similarity to GB:BAC91077.1; match to protein family HMM PF05685; hypothetical protein 1550202 3897146 CYA_1540 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474968.1 1549537 D 321327 CDS YP_474969.1 86606206 3897147 complement(1550208..1550846) 1 NC_007775.1 identified by match to protein family HMM PF00325; Crp/FNR family transcriptional regulator 1550846 3897147 CYA_1541 Synechococcus sp. JA-3-3Ab Crp/FNR family transcriptional regulator YP_474969.1 1550208 R 321327 CDS YP_474970.1 86606207 3897148 1551104..1551511 1 NC_007775.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 1551511 atpC 3897148 atpC Synechococcus sp. JA-3-3Ab F0F1 ATP synthase subunit epsilon YP_474970.1 1551104 D 321327 CDS YP_474971.1 86606208 3899930 1551633..1552100 1 NC_007775.1 identified by match to protein family HMM PF00376; MerR family transcriptional regulator 1552100 3899930 CYA_1544 Synechococcus sp. JA-3-3Ab MerR family transcriptional regulator YP_474971.1 1551633 D 321327 CDS YP_474972.1 86606209 3899931 complement(1552061..1553908) 1 NC_007775.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135; glucosamine--fructose-6-phosphate aminotransferase 1553908 glmS 3899931 glmS Synechococcus sp. JA-3-3Ab glucosamine--fructose-6-phosphate aminotransferase YP_474972.1 1552061 R 321327 CDS YP_474973.1 86606210 3899932 complement(1553982..1555208) 1 NC_007775.1 identified by match to protein family HMM PF02470; mce related protein 1555208 3899932 CYA_1545 Synechococcus sp. JA-3-3Ab mce related protein YP_474973.1 1553982 R 321327 CDS YP_474974.1 86606211 3899934 complement(1556256..1557062) 1 NC_007775.1 identified by match to protein family HMM PF03741; TerC family membrane protein 1557062 3899934 CYA_1547 Synechococcus sp. JA-3-3Ab TerC family membrane protein YP_474974.1 1556256 R 321327 CDS YP_474975.1 86606212 3899935 complement(1557330..1558139) 1 NC_007775.1 identified by similarity to GB:AAD29318.1; circadian phase modifier CpmA-like protein 1558139 3899935 CYA_1548 Synechococcus sp. JA-3-3Ab circadian phase modifier CpmA-like protein YP_474975.1 1557330 R 321327 CDS YP_474976.1 86606213 3899936 complement(1558160..1559056) 1 NC_007775.1 identified by match to protein family HMM PF00582; universal stress protein 1559056 3899936 CYA_1549 Synechococcus sp. JA-3-3Ab universal stress protein YP_474976.1 1558160 R 321327 CDS YP_474977.1 86606214 3899937 complement(1559184..1560959) 1 NC_007775.1 identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; replicative DNA helicase 1560959 dnaB 3899937 dnaB Synechococcus sp. JA-3-3Ab replicative DNA helicase YP_474977.1 1559184 R 321327 CDS YP_474978.1 86606215 3899938 complement(1561070..1561531) 1 NC_007775.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 1561531 rplI 3899938 rplI Synechococcus sp. JA-3-3Ab 50S ribosomal protein L9 YP_474978.1 1561070 R 321327 CDS YP_474979.1 86606216 3899939 1561867..1562946 1 NC_007775.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975; match to protein family HMM TIGR01409; phosphate ABC transporter, phosphate-binding protein 1562946 pstS-2 3899939 pstS-2 Synechococcus sp. JA-3-3Ab phosphate ABC transporter, phosphate-binding protein YP_474979.1 1561867 D 321327 CDS YP_474980.1 86606217 3899940 1562971..1563939 1 NC_007775.1 identified by similarity to SP:P07653; match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter, permease protein PstC 1563939 pstC-1 3899940 pstC-1 Synechococcus sp. JA-3-3Ab phosphate ABC transporter, permease protein PstC YP_474980.1 1562971 D 321327 CDS YP_474981.1 86606218 3899941 1563946..1564845 1 NC_007775.1 identified by similarity to SP:P07654; match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 1564845 pstA-1 3899941 pstA-1 Synechococcus sp. JA-3-3Ab phosphate ABC transporter permease YP_474981.1 1563946 D 321327 CDS YP_474982.1 86606219 3899942 1564882..1565709 1 NC_007775.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1565709 pstB-1 3899942 pstB-1 Synechococcus sp. JA-3-3Ab phosphate transporter ATP-binding protein YP_474982.1 1564882 D 321327 CDS YP_474983.1 86606220 3899943 1565775..1566602 1 NC_007775.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A 1566602 3899943 CYA_1556 Synechococcus sp. JA-3-3Ab hemolysin A YP_474983.1 1565775 D 321327 CDS YP_474984.1 86606221 3899944 1566646..1567080 1 NC_007775.1 identified by match to protein family HMM PF07719; hypothetical protein 1567080 3899944 CYA_1557 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474984.1 1566646 D 321327 CDS YP_474985.1 86606222 3899945 1567349..1567552 1 NC_007775.1 hypothetical protein 1567552 3899945 CYA_1558 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474985.1 1567349 D 321327 CDS YP_474986.1 86606223 3899946 complement(1567851..1569032) 1 NC_007775.1 ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms; sulfate adenylyltransferase 1569032 sat 3899946 sat Synechococcus sp. JA-3-3Ab sulfate adenylyltransferase YP_474986.1 1567851 R 321327 CDS YP_474987.1 86606224 3899947 complement(1569146..1569517) 1 NC_007775.1 hypothetical protein 1569517 3899947 CYA_1560 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474987.1 1569146 R 321327 CDS YP_474988.1 86606225 3899948 complement(1569646..1570428) 1 NC_007775.1 identified by match to protein family HMM PF01656; chromosome partitioning protein ParA 1570428 3899948 CYA_1561 Synechococcus sp. JA-3-3Ab chromosome partitioning protein ParA YP_474988.1 1569646 R 321327 CDS YP_474989.1 86606226 3899863 1570546..1571832 1 NC_007775.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 1571832 glgC 3899863 glgC Synechococcus sp. JA-3-3Ab glucose-1-phosphate adenylyltransferase YP_474989.1 1570546 D 321327 CDS YP_474990.1 86606227 3899864 1571985..1573757 1 NC_007775.1 identified by match to protein family HMM PF03109; hypothetical protein 1573757 3899864 CYA_1563 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474990.1 1571985 D 321327 CDS YP_474991.1 86606228 3899865 1573800..1574174 1 NC_007775.1 hypothetical protein 1574174 3899865 CYA_1564 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474991.1 1573800 D 321327 CDS YP_474992.1 86606229 3899866 1574337..1574666 1 NC_007775.1 identified by similarity to GB:BAC08086.1; match to protein family HMM PF02325; hypothetical protein 1574666 3899866 CYA_1565 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474992.1 1574337 D 321327 CDS YP_474993.1 86606230 3899867 1574742..1576091 1 NC_007775.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 1576091 3899867 CYA_1567 Synechococcus sp. JA-3-3Ab cytosine deaminase YP_474993.1 1574742 D 321327 CDS YP_474994.1 86606231 3899868 complement(1576088..1577257) 1 NC_007775.1 hypothetical protein 1577257 3899868 CYA_1566 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474994.1 1576088 R 321327 CDS YP_474995.1 86606232 3899869 1577385..1577690 1 NC_007775.1 hypothetical protein 1577690 3899869 CYA_1568 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474995.1 1577385 D 321327 CDS YP_474996.1 86606233 3899870 1577759..1578805 1 NC_007775.1 catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase 1578805 thiE 3899870 thiE Synechococcus sp. JA-3-3Ab thiamine-phosphate pyrophosphorylase YP_474996.1 1577759 D 321327 CDS YP_474997.1 86606234 3899871 1578942..1580483 1 NC_007775.1 identified by match to protein family HMM PF00004; AAA ATPase 1580483 3899871 CYA_1570 Synechococcus sp. JA-3-3Ab AAA ATPase YP_474997.1 1578942 D 321327 CDS YP_474998.1 86606235 3899872 1580613..1582763 1 NC_007775.1 identified by match to protein family HMM PF01266; oxidoreductase, FAD-binding 1582763 3899872 CYA_1571 Synechococcus sp. JA-3-3Ab oxidoreductase, FAD-binding YP_474998.1 1580613 D 321327 CDS YP_474999.1 86606236 3899873 1583158..1583496 1 NC_007775.1 hypothetical protein 1583496 3899873 CYA_1572 Synechococcus sp. JA-3-3Ab hypothetical protein YP_474999.1 1583158 D 321327 CDS YP_475000.1 86606237 3899874 1583545..1583886 1 NC_007775.1 identified by match to protein family HMM PF01230; histidine triad family protein 1583886 3899874 CYA_1573 Synechococcus sp. JA-3-3Ab histidine triad family protein YP_475000.1 1583545 D 321327 CDS YP_475001.1 86606238 3899875 1583968..1584618 1 NC_007775.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase 1584618 cobH-2 3899875 cobH-2 Synechococcus sp. JA-3-3Ab precorrin-8X methylmutase YP_475001.1 1583968 D 321327 CDS YP_475002.1 86606239 3899876 1584648..1585166 1 NC_007775.1 hypothetical protein 1585166 3899876 CYA_1575 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475002.1 1584648 D 321327 CDS YP_475003.1 86606240 3899877 complement(1585247..1586977) 1 NC_007775.1 identified by similarity to SP:Q8DJY2; match to protein family HMM PF00258; match to protein family HMM PF00753; match to protein family HMM PF01613; diflavin flavoprotein 1586977 3899877 CYA_1576 Synechococcus sp. JA-3-3Ab diflavin flavoprotein YP_475003.1 1585247 R 321327 CDS YP_475004.1 86606241 3899878 complement(1587092..1588858) 1 NC_007775.1 identified by match to protein family HMM PF01926; GTP-binding protein 1588858 3899878 CYA_1577 Synechococcus sp. JA-3-3Ab GTP-binding protein YP_475004.1 1587092 R 321327 CDS YP_475005.1 86606242 3899879 complement(1588905..1589078) 1 NC_007775.1 hypothetical protein 1589078 3899879 CYA_1578 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475005.1 1588905 R 321327 CDS YP_529503.1 90296796 3899880 complement(1589130..1589561) 1 NC_007775.1 hypothetical protein 1589561 3899880 CYA_1579 Synechococcus sp. JA-3-3Ab hypothetical protein YP_529503.1 1589130 R 321327 CDS YP_475006.1 86606243 3899881 complement(1589713..1589835) 1 NC_007775.1 hypothetical protein 1589835 3899881 CYA_1580 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475006.1 1589713 R 321327 CDS YP_475007.1 86606244 3899730 complement(1589902..1590858) 1 NC_007775.1 identified by match to protein family HMM PF02653; carbohydrate ABC transporter permease 1590858 3899730 CYA_1581 Synechococcus sp. JA-3-3Ab carbohydrate ABC transporter permease YP_475007.1 1589902 R 321327 CDS YP_475008.1 86606245 3899731 complement(1590865..1591914) 1 NC_007775.1 identified by match to protein family HMM PF02653; carbohydrate ABC transporter permease 1591914 3899731 CYA_1582 Synechococcus sp. JA-3-3Ab carbohydrate ABC transporter permease YP_475008.1 1590865 R 321327 CDS YP_475009.1 86606246 3899732 complement(1591904..1593466) 1 NC_007775.1 identified by match to protein family HMM PF00005; carbohydrate ABC transporter ATP-binding protein 1593466 3899732 CYA_1583 Synechococcus sp. JA-3-3Ab carbohydrate ABC transporter ATP-binding protein YP_475009.1 1591904 R 321327 CDS YP_475010.1 86606247 3899733 complement(1593438..1594466) 1 NC_007775.1 identified by match to protein family HMM PF02608; match to protein family HMM TIGR01409; Tat (twin-arginine translocation) pathway signal sequence/basic membrane protein 1594466 3899733 CYA_1584 Synechococcus sp. JA-3-3Ab Tat (twin-arginine translocation) pathway signal sequence/basic membrane protein YP_475010.1 1593438 R 321327 CDS YP_475011.1 86606248 3899734 1594890..1596107 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase 1596107 3899734 CYA_1585 Synechococcus sp. JA-3-3Ab ISSoc1, transposase YP_475011.1 1594890 D 321327 CDS YP_475012.1 86606249 3899735 1596165..1597439 1 NC_007775.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 1597439 codA 3899735 codA Synechococcus sp. JA-3-3Ab cytosine deaminase YP_475012.1 1596165 D 321327 CDS YP_475013.1 86606250 3899736 complement(1597436..1597876) 1 NC_007775.1 hypothetical protein 1597876 3899736 CYA_1586 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475013.1 1597436 R 321327 CDS YP_475014.1 86606251 3899737 complement(1597902..1598534) 1 NC_007775.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5-formyltetrahydrofolate cyclo-ligase 1598534 3899737 CYA_1588 Synechococcus sp. JA-3-3Ab 5-formyltetrahydrofolate cyclo-ligase YP_475014.1 1597902 R 321327 CDS YP_475015.1 86606252 3899738 complement(1598579..1599034) 1 NC_007775.1 identified by similarity to SP:P25138; match to protein family HMM PF00254; FKBP-type peptidyl-prolyl cis-trans isomerase 1599034 3899738 CYA_1589 Synechococcus sp. JA-3-3Ab FKBP-type peptidyl-prolyl cis-trans isomerase YP_475015.1 1598579 R 321327 CDS YP_475016.1 86606253 3899739 complement(1599102..1599743) 1 NC_007775.1 hypothetical protein 1599743 3899739 CYA_1590 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475016.1 1599102 R 321327 CDS YP_475017.1 86606254 3899740 1599799..1601667 1 NC_007775.1 identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466; match to protein family HMM TIGR02467; cbiG protein/precorrin-3B C17-methyltransferase 1601667 cbiG/cobJ-1 3899740 cbiG/cobJ-1 Synechococcus sp. JA-3-3Ab cbiG protein/precorrin-3B C17-methyltransferase YP_475017.1 1599799 D 321327 CDS YP_475018.1 86606255 3899741 complement(1601699..1601950) 1 NC_007775.1 hypothetical protein 1601950 3899741 CYA_1592 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475018.1 1601699 R 321327 CDS YP_475019.1 86606256 3899742 1602098..1603957 1 NC_007775.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NAD(P)H-quinone oxidoreductase subunit F 1603957 3899742 CYA_1593 Synechococcus sp. JA-3-3Ab NAD(P)H-quinone oxidoreductase subunit F YP_475019.1 1602098 D 321327 CDS YP_475020.1 86606257 3899743 1603971..1605488 1 NC_007775.1 identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH-ubiquinone/plastoquinone oxidoreductase subunit 4 family protein 1605488 3899743 CYA_1594 Synechococcus sp. JA-3-3Ab NADH-ubiquinone/plastoquinone oxidoreductase subunit 4 family protein YP_475020.1 1603971 D 321327 CDS YP_475021.1 86606258 3899744 1605542..1606801 1 NC_007775.1 identified by match to protein family HMM TIGR01964; CO2 hydration protein 1606801 3899744 CYA_1595 Synechococcus sp. JA-3-3Ab CO2 hydration protein YP_475021.1 1605542 D 321327 CDS YP_475022.1 86606259 3899746 1607176..1608336 1 NC_007775.1 identified by similarity to SP:P14776; match to protein family HMM PF00266; soluble hydrogenase, tritium exchange subunit 1608336 3899746 CYA_1597 Synechococcus sp. JA-3-3Ab soluble hydrogenase, tritium exchange subunit YP_475022.1 1607176 D 321327 CDS YP_475023.1 86606260 3899747 1608479..1609147 1 NC_007775.1 identified by match to protein family HMM PF02811; phosphotransferase domain-containing protein 1609147 3899747 CYA_1598 Synechococcus sp. JA-3-3Ab phosphotransferase domain-containing protein YP_475023.1 1608479 D 321327 CDS YP_475024.1 86606261 3898404 complement(1609166..1610215) 1 NC_007775.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885; VIC family potassium channel protein 1610215 3898404 CYA_1599 Synechococcus sp. JA-3-3Ab VIC family potassium channel protein YP_475024.1 1609166 R 321327 CDS YP_475025.1 86606262 3898405 1610304..1610516 1 NC_007775.1 identified by similarity to GB:BAC91745.1; hypothetical protein 1610516 3898405 CYA_1600 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475025.1 1610304 D 321327 CDS YP_475026.1 86606263 3898406 complement(1610556..1610786) 1 NC_007775.1 hypothetical protein 1610786 3898406 CYA_1601 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475026.1 1610556 R 321327 CDS YP_475027.1 86606264 3898407 complement(1610938..1611348) 1 NC_007775.1 participates in electron transfer in photosystem I; plastocyanin 1611348 petE 3898407 petE Synechococcus sp. JA-3-3Ab plastocyanin YP_475027.1 1610938 R 321327 CDS YP_475028.1 86606265 3898409 1612112..1613059 1 NC_007775.1 identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfAB 1613059 3898409 CYA_1604 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfAB YP_475028.1 1612112 D 321327 CDS YP_475029.1 86606266 3898410 complement(1613457..1613624) 1 NC_007775.1 identified by similarity to PIR:AB2208; hypothetical protein 1613624 3898410 CYA_1605 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475029.1 1613457 R 321327 CDS YP_475030.1 86606267 3898411 1614027..1614413 1 NC_007775.1 identified by similarity to GB:BAC08441.1; hypothetical protein 1614413 3898411 CYA_1606 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475030.1 1614027 D 321327 CDS YP_475031.1 86606268 3898412 1614468..1614686 1 NC_007775.1 identified by similarity to GB:BAC91485.1; hypothetical protein 1614686 3898412 CYA_1607 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475031.1 1614468 D 321327 CDS YP_475032.1 86606269 3898413 1614729..1615568 1 NC_007775.1 hypothetical protein 1615568 3898413 CYA_1608 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475032.1 1614729 D 321327 CDS YP_475033.1 86606270 3898414 1615590..1616315 1 NC_007775.1 identified by match to protein family HMM PF00005; cobalt ABC transporter ATP-binding protein 1616315 3898414 CYA_1609 Synechococcus sp. JA-3-3Ab cobalt ABC transporter ATP-binding protein YP_475033.1 1615590 D 321327 CDS YP_475034.1 86606271 3898415 1616391..1616552 1 NC_007775.1 hypothetical protein 1616552 3898415 CYA_1610 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475034.1 1616391 D 321327 CDS YP_475035.1 86606272 3898416 1616847..1617155 1 NC_007775.1 identified by similarity to SP:Q03511; match to protein family HMM PF00936; carbon dioxide concentrating mechanism protein CcmK 1617155 ccmK-1 3898416 ccmK-1 Synechococcus sp. JA-3-3Ab carbon dioxide concentrating mechanism protein CcmK YP_475035.1 1616847 D 321327 CDS YP_475036.1 86606273 3898417 1617247..1617588 1 NC_007775.1 identified by similarity to SP:Q03511; match to protein family HMM PF00936; carbon dioxide concentrating mechanism protein CcmK 1617588 ccmK-2 3898417 ccmK-2 Synechococcus sp. JA-3-3Ab carbon dioxide concentrating mechanism protein CcmK YP_475036.1 1617247 D 321327 CDS YP_475037.1 86606274 3898418 1617589..1617888 1 NC_007775.1 identified by similarity to SP:P72759; match to protein family HMM PF03319; carbon dioxide concentrating mechanism protein CcmL 1617888 ccmL 3898418 ccmL Synechococcus sp. JA-3-3Ab carbon dioxide concentrating mechanism protein CcmL YP_475037.1 1617589 D 321327 CDS YP_475038.1 86606275 3898419 1617937..1619901 1 NC_007775.1 identified by similarity to SP:Q03513; carbon dioxide concentrating mechanism protein CcmM 1619901 ccmM 3898419 ccmM Synechococcus sp. JA-3-3Ab carbon dioxide concentrating mechanism protein CcmM YP_475038.1 1617937 D 321327 CDS YP_475039.1 86606276 3898420 1619982..1620671 1 NC_007775.1 hypothetical protein 1620671 3898420 CYA_1615 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475039.1 1619982 D 321327 CDS YP_475040.1 86606277 3898421 1620703..1621419 1 NC_007775.1 identified by match to protein family HMM PF00936; microcompartments family protein 1621419 3898421 CYA_1616 Synechococcus sp. JA-3-3Ab microcompartments family protein YP_475040.1 1620703 D 321327 CDS YP_475041.1 86606278 3898422 1621688..1622101 1 NC_007775.1 hypothetical protein 1622101 3898422 CYA_1617 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475041.1 1621688 D 321327 CDS YP_475042.1 86606279 3897578 complement(1622498..1622881) 1 NC_007775.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1622881 rplS 3897578 rplS Synechococcus sp. JA-3-3Ab 50S ribosomal protein L19 YP_475042.1 1622498 R 321327 CDS YP_475043.1 86606280 3897579 1623053..1624450 1 NC_007775.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01167; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 1624450 3897579 CYA_1620 Synechococcus sp. JA-3-3Ab RND family efflux transporter MFP subunit YP_475043.1 1623053 D 321327 CDS YP_475044.1 86606281 3897580 1624447..1625658 1 NC_007775.1 identified by similarity to SP:P75831; match to protein family HMM PF02687; macrolide ABC transporter permease 1625658 macB 3897580 macB Synechococcus sp. JA-3-3Ab macrolide ABC transporter permease YP_475044.1 1624447 D 321327 CDS YP_475045.1 86606282 3897581 1625731..1626651 1 NC_007775.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1626651 thrB 3897581 thrB Synechococcus sp. JA-3-3Ab homoserine kinase YP_475045.1 1625731 D 321327 CDS YP_475046.1 86606283 3897582 complement(1626880..1627374) 1 NC_007775.1 identified by match to protein family HMM PF01219; diacylglycerol kinase 1627374 dgkA 3897582 dgkA Synechococcus sp. JA-3-3Ab diacylglycerol kinase YP_475046.1 1626880 R 321327 CDS YP_475047.1 86606284 3897583 complement(1627406..1628002) 1 NC_007775.1 identified by similarity to SP:Q8Z032; match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein 1628002 3897583 CYA_1624 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475047.1 1627406 R 321327 CDS YP_475048.1 86606285 3897584 complement(1628283..1629023) 1 NC_007775.1 identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182; 2-dehydro-3-deoxyphosphogluconate aldolase 1629023 eda 3897584 eda Synechococcus sp. JA-3-3Ab 2-dehydro-3-deoxyphosphogluconate aldolase YP_475048.1 1628283 R 321327 CDS YP_475049.1 86606286 3897585 1629793..1630971 1 NC_007775.1 identified by match to protein family HMM PF01551; M23B family peptidase 1630971 3897585 CYA_1627 Synechococcus sp. JA-3-3Ab M23B family peptidase YP_475049.1 1629793 D 321327 CDS YP_475050.1 86606287 3897586 complement(1630962..1631612) 1 NC_007775.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1631612 3897586 CYA_1626 Synechococcus sp. JA-3-3Ab ABC transporter ATP-binding protein YP_475050.1 1630962 R 321327 CDS YP_475051.1 86606288 3897587 complement(1631671..1631919) 1 NC_007775.1 identified by similarity to GB:BAC90997.1; hypothetical protein 1631919 3897587 CYA_1628 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475051.1 1631671 R 321327 CDS YP_475052.1 86606289 3897588 1632071..1632571 1 NC_007775.1 identified by match to protein family HMM PF01451; low molecular weight phosphotyrosine protein phosphatase family protein 1632571 3897588 CYA_1629 Synechococcus sp. JA-3-3Ab low molecular weight phosphotyrosine protein phosphatase family protein YP_475052.1 1632071 D 321327 CDS YP_475053.1 86606290 3897589 complement(1632594..1632902) 1 NC_007775.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 1632902 3897589 CYA_1630 Synechococcus sp. JA-3-3Ab NADH dehydrogenase subunit K YP_475053.1 1632594 R 321327 CDS YP_475054.1 86606291 3897590 complement(1632979..1633587) 1 NC_007775.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 1633587 3897590 CYA_1631 Synechococcus sp. JA-3-3Ab NADH dehydrogenase subunit J YP_475054.1 1632979 R 321327 CDS YP_475055.1 86606292 3897591 complement(1633707..1634978) 1 NC_007775.1 identified by similarity to GB:CAD84826.1; match to protein family HMM PF04536; hypothetical protein 1634978 3897591 CYA_1632 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475055.1 1633707 R 321327 CDS YP_475056.1 86606293 3897592 complement(1635202..1635933) 1 NC_007775.1 identified by match to protein family HMM PF03099; biotin/lipoate A/B protein ligase family protein 1635933 3897592 CYA_1633 Synechococcus sp. JA-3-3Ab biotin/lipoate A/B protein ligase family protein YP_475056.1 1635202 R 321327 CDS YP_475057.1 86606294 3897593 complement(1635933..1636400) 1 NC_007775.1 identified by similarity to PIR:AB2051; hypothetical protein 1636400 3897593 CYA_1634 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475057.1 1635933 R 321327 CDS YP_475058.1 86606295 3897595 1636901..1637653 1 NC_007775.1 identified by match to protein family HMM PF01048; match to protein family HMM TIGR01704; MTA/SAH nucleosidase 1637653 mtnN 3897595 mtnN Synechococcus sp. JA-3-3Ab MTA/SAH nucleosidase YP_475058.1 1636901 D 321327 CDS YP_475059.1 86606296 3898196 1638377..1639180 1 NC_007775.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1639180 rpsB 3898196 rpsB Synechococcus sp. JA-3-3Ab 30S ribosomal protein S2 YP_475059.1 1638377 D 321327 CDS YP_475060.1 86606297 3898197 1639356..1640204 1 NC_007775.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1640204 tsf 3898197 tsf Synechococcus sp. JA-3-3Ab elongation factor Ts YP_475060.1 1639356 D 321327 CDS YP_475061.1 86606298 3898198 1640411..1641823 1 NC_007775.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family protein 1641823 3898198 CYA_1640 Synechococcus sp. JA-3-3Ab amidohydrolase family protein YP_475061.1 1640411 D 321327 CDS YP_475062.1 86606299 3898199 1641847..1642875 1 NC_007775.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00276; iron-sulfur cluster binding protein 1642875 3898199 CYA_1641 Synechococcus sp. JA-3-3Ab iron-sulfur cluster binding protein YP_475062.1 1641847 D 321327 CDS YP_475063.1 86606300 3898200 complement(1642886..1643128) 1 NC_007775.1 identified by match to protein family HMM PF07282; transposase, truncation 1643128 3898200 CYA_1642 Synechococcus sp. JA-3-3Ab transposase, truncation YP_475063.1 1642886 R 321327 CDS YP_475064.1 86606301 3898201 1643344..1643526 1 NC_007775.1 hypothetical protein 1643526 3898201 CYA_1643 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475064.1 1643344 D 321327 CDS YP_475065.1 86606302 3898203 1644320..1644937 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 1644937 3898203 CYA_1645 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_475065.1 1644320 D 321327 CDS YP_475066.1 86606303 3898204 1644792..1646072 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 1646072 3898204 CYA_1646 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_475066.1 1644792 D 321327 CDS YP_475067.1 86606304 3898206 complement(1646277..1647641) 1 NC_007775.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1647641 dnaN 3898206 dnaN Synechococcus sp. JA-3-3Ab DNA polymerase III subunit beta YP_475067.1 1646277 R 321327 CDS YP_475068.1 86606305 3898207 1648111..1648440 1 NC_007775.1 hypothetical protein 1648440 3898207 CYA_1649 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475068.1 1648111 D 321327 CDS YP_475069.1 86606306 3898208 complement(1648460..1649500) 1 NC_007775.1 identified by match to protein family HMM PF00724; match to protein family HMM PF01207; match to protein family HMM TIGR00737; dihydrouridine synthase family protein 1649500 3898208 CYA_1650 Synechococcus sp. JA-3-3Ab dihydrouridine synthase family protein YP_475069.1 1648460 R 321327 CDS YP_475070.1 86606307 3898209 complement(1649564..1649779) 1 NC_007775.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 1649779 rpsR 3898209 rpsR Synechococcus sp. JA-3-3Ab 30S ribosomal protein S18 YP_475070.1 1649564 R 321327 CDS YP_475071.1 86606308 3898210 complement(1649809..1650003) 1 NC_007775.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 1650003 rpmG 3898210 rpmG Synechococcus sp. JA-3-3Ab 50S ribosomal protein L33 YP_475071.1 1649809 R 321327 CDS YP_475072.1 86606309 3898211 complement(1650093..1650863) 1 NC_007775.1 identified by match to protein family HMM PF06271; RDD family protein 1650863 3898211 CYA_1653 Synechococcus sp. JA-3-3Ab RDD family protein YP_475072.1 1650093 R 321327 CDS YP_475073.1 86606310 3898212 complement(1650995..1651969) 1 NC_007775.1 identified by similarity to SP:P54548; match to protein family HMM PF00753; match to protein family HMM TIGR02651; ribonuclease Z 1651969 rnz 3898212 rnz Synechococcus sp. JA-3-3Ab ribonuclease Z YP_475073.1 1650995 R 321327 CDS YP_475074.1 86606311 3898213 1652092..1652448 1 NC_007775.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; iron-sulfur cluster assembly accessory protein 1652448 3898213 CYA_1655 Synechococcus sp. JA-3-3Ab iron-sulfur cluster assembly accessory protein YP_475074.1 1652092 D 321327 CDS YP_475075.1 86606312 3897841 complement(1652449..1653678) 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator 1653678 3897841 CYA_1656 Synechococcus sp. JA-3-3Ab sensor histidine kinase/response regulator YP_475075.1 1652449 R 321327 CDS YP_475076.1 86606313 3897842 complement(1653665..1658044) 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 1658044 3897842 CYA_1657 Synechococcus sp. JA-3-3Ab sensory box histidine kinase/response regulator YP_475076.1 1653665 R 321327 CDS YP_475077.1 86606314 3897843 complement(1658286..1661042) 1 NC_007775.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517; ATPase P 1661042 3897843 CYA_1658 Synechococcus sp. JA-3-3Ab ATPase P YP_475077.1 1658286 R 321327 CDS YP_475078.1 86606315 3897844 1661167..1662945 1 NC_007775.1 identified by similarity to SP:P74373; match to protein family HMM PF00258; match to protein family HMM PF00753; match to protein family HMM PF01613; diflavin flavoprotein 1662945 3897844 CYA_1659 Synechococcus sp. JA-3-3Ab diflavin flavoprotein YP_475078.1 1661167 D 321327 CDS YP_475079.1 86606316 3897845 1662980..1663897 1 NC_007775.1 hypothetical protein 1663897 3897845 CYA_1660 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475079.1 1662980 D 321327 CDS YP_475080.1 86606317 3897846 1663936..1664334 1 NC_007775.1 identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfA 1664334 3897846 CYA_1661 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfA YP_475080.1 1663936 D 321327 CDS YP_475081.1 86606318 3897847 1664316..1664882 1 NC_007775.1 identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfB 1664882 3897847 CYA_1662 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfB YP_475081.1 1664316 D 321327 CDS YP_475082.1 86606319 3897848 1665244..1666608 1 NC_007775.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 1666608 3897848 CYA_1663 Synechococcus sp. JA-3-3Ab phosphoglycerate mutase family protein YP_475082.1 1665244 D 321327 CDS YP_475083.1 86606320 3897849 1666620..1667954 1 NC_007775.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 1667954 3897849 CYA_1664 Synechococcus sp. JA-3-3Ab dihydroorotase YP_475083.1 1666620 D 321327 CDS YP_475084.1 86606321 3897850 1668088..1669062 1 NC_007775.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; YihY family protein 1669062 3897850 CYA_1665 Synechococcus sp. JA-3-3Ab YihY family protein YP_475084.1 1668088 D 321327 CDS YP_475085.1 86606322 3897851 1669031..1670131 1 NC_007775.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 1670131 3897851 CYA_1666 Synechococcus sp. JA-3-3Ab Sua5/YciO/YrdC/YwlC family protein YP_475085.1 1669031 D 321327 CDS YP_475086.1 86606323 3897852 1670101..1670631 1 NC_007775.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit 1670631 purE 3897852 purE Synechococcus sp. JA-3-3Ab phosphoribosylaminoimidazole carboxylase catalytic subunit YP_475086.1 1670101 D 321327 CDS YP_475087.1 86606324 3897853 1670799..1671482 1 NC_007775.1 identified by similarity to GB:BAD78557.1; hypothetical protein 1671482 3897853 CYA_1668 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475087.1 1670799 D 321327 CDS YP_475088.1 86606325 3897854 1671618..1672607 1 NC_007775.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683; cobalamin biosynthesis protein CobW 1672607 3897854 CYA_1669 Synechococcus sp. JA-3-3Ab cobalamin biosynthesis protein CobW YP_475088.1 1671618 D 321327 CDS YP_475089.1 86606326 3897855 1672706..1673014 1 NC_007775.1 hypothetical protein 1673014 3897855 CYA_1670 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475089.1 1672706 D 321327 CDS YP_475090.1 86606327 3897856 1673017..1673238 1 NC_007775.1 hypothetical protein 1673238 3897856 CYA_1672 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475090.1 1673017 D 321327 CDS YP_475091.1 86606328 3897857 complement(1673208..1673291) 1 NC_007775.1 hypothetical protein 1673291 3897857 CYA_1671 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475091.1 1673208 R 321327 CDS YP_475092.1 86606329 3897858 complement(1673291..1674907) 1 NC_007775.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1674907 guaA 3897858 guaA Synechococcus sp. JA-3-3Ab GMP synthase YP_475092.1 1673291 R 321327 CDS YP_475093.1 86606330 3897859 1675216..1676220 1 NC_007775.1 hypothetical protein 1676220 3897859 CYA_1674 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475093.1 1675216 D 321327 CDS YP_475094.1 86606331 3897519 1676217..1676999 1 NC_007775.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 1676999 gidB 3897519 gidB Synechococcus sp. JA-3-3Ab 16S rRNA methyltransferase GidB YP_475094.1 1676217 D 321327 CDS YP_475095.1 86606332 3897520 complement(1677020..1677130) 1 NC_007775.1 hypothetical protein 1677130 3897520 CYA_1676 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475095.1 1677020 R 321327 CDS YP_475096.1 86606333 3897521 1677194..1677484 1 NC_007775.1 identified by match to protein family HMM PF00076; RNA-binding protein 1677484 3897521 CYA_1677 Synechococcus sp. JA-3-3Ab RNA-binding protein YP_475096.1 1677194 D 321327 CDS YP_475097.1 86606334 3897522 complement(1677524..1678357) 1 NC_007775.1 identified by similarity to GB:AAD56938.1; match to protein family HMM PF00950; manganese/zinc/iron chelate ABC transporter permease 1678357 3897522 CYA_1678 Synechococcus sp. JA-3-3Ab manganese/zinc/iron chelate ABC transporter permease YP_475097.1 1677524 R 321327 CDS YP_475098.1 86606335 3897523 complement(1678373..1679128) 1 NC_007775.1 identified by match to protein family HMM PF00005; manganese/zinc/iron chelate ABC transporter ATP-binding protein 1679128 3897523 CYA_1679 Synechococcus sp. JA-3-3Ab manganese/zinc/iron chelate ABC transporter ATP-binding protein YP_475098.1 1678373 R 321327 CDS YP_475099.1 86606336 3897524 1679191..1680126 1 NC_007775.1 identified by similarity to SP:P31305; match to protein family HMM PF01297; cation ABC transporter cation-binding protein 1680126 3897524 CYA_1680 Synechococcus sp. JA-3-3Ab cation ABC transporter cation-binding protein YP_475099.1 1679191 D 321327 CDS YP_475100.1 86606337 3897525 1680199..1682004 1 NC_007775.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1682004 aspS 3897525 aspS Synechococcus sp. JA-3-3Ab aspartyl-tRNA synthetase YP_475100.1 1680199 D 321327 CDS YP_475101.1 86606338 3897526 1682064..1682840 1 NC_007775.1 NADH-dependent; catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 1682840 3897526 CYA_1682 Synechococcus sp. JA-3-3Ab enoyl-(acyl carrier protein) reductase YP_475101.1 1682064 D 321327 CDS YP_475102.1 86606339 3897527 1682862..1683998 1 NC_007775.1 identified by match to protein family HMM PF01594; hypothetical protein 1683998 3897527 CYA_1683 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475102.1 1682862 D 321327 CDS YP_475103.1 86606340 3897528 complement(1684079..1684966) 1 NC_007775.1 hypothetical protein 1684966 3897528 CYA_1684 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475103.1 1684079 R 321327 CDS YP_475104.1 86606341 3897529 complement(1684963..1685463) 1 NC_007775.1 hypothetical protein 1685463 3897529 CYA_1685 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475104.1 1684963 R 321327 CDS YP_475105.1 86606342 3897530 complement(1685534..1686058) 1 NC_007775.1 low-potential cytochrome c; with PsbO, PsbP, PsbQ, and PsbU makes up the oxygen-evolving complex of photosystem II; cytochrome c-550 1686058 psbV 3897530 psbV Synechococcus sp. JA-3-3Ab cytochrome c-550 YP_475105.1 1685534 R 321327 CDS YP_475106.1 86606343 3897531 complement(1686058..1686594) 1 NC_007775.1 low-potential cytochrome c; with PsbO, PsbP, PsbQ, and PsbU makes up the oxygen-evolving complex of photosystem II; cytochrome c-550 1686594 psbV 3897531 psbV Synechococcus sp. JA-3-3Ab cytochrome c-550 YP_475106.1 1686058 R 321327 CDS YP_475107.1 86606344 3897532 1686986..1688047 1 NC_007775.1 identified by similarity to GB:BAC07614.1; hypothetical protein 1688047 3897532 CYA_1688 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475107.1 1686986 D 321327 CDS YP_475108.1 86606345 3897533 1688040..1689731 1 NC_007775.1 identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 1689731 3897533 CYA_1689 Synechococcus sp. JA-3-3Ab dolichyl-phosphate-mannose-protein mannosyltransferase YP_475108.1 1688040 D 321327 CDS YP_475109.1 86606346 3897534 1689739..1690470 1 NC_007775.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 1690470 radC 3897534 radC Synechococcus sp. JA-3-3Ab DNA repair protein RadC YP_475109.1 1689739 D 321327 CDS YP_475110.1 86606347 3897535 complement(1690555..1691523) 1 NC_007775.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 1691523 fmt 3897535 fmt Synechococcus sp. JA-3-3Ab methionyl-tRNA formyltransferase YP_475110.1 1690555 R 321327 CDS YP_475111.1 86606348 3897536 complement(1691548..1692159) 1 NC_007775.1 hypothetical protein 1692159 3897536 CYA_1692 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475111.1 1691548 R 321327 CDS YP_475112.1 86606349 3897537 complement(1692332..1693732) 1 NC_007775.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 1693732 mgtE-2 3897537 mgtE-2 Synechococcus sp. JA-3-3Ab magnesium transporter YP_475112.1 1692332 R 321327 CDS YP_475113.1 86606350 3897538 complement(1694021..1695745) 1 NC_007775.1 identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 1695745 3897538 CYA_1694 Synechococcus sp. JA-3-3Ab iron-sulfur cluster-binding protein YP_475113.1 1694021 R 321327 CDS YP_475114.1 86606351 3897462 1696037..1697485 1 NC_007775.1 hypothetical protein 1697485 3897462 CYA_1695 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475114.1 1696037 D 321327 CDS YP_475115.1 86606352 3897463 1697729..1699789 1 NC_007775.1 identified by similarity to PIR:H83315; match to protein family HMM PF05787; hypothetical protein 1699789 3897463 CYA_1696 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475115.1 1697729 D 321327 CDS YP_475116.1 86606353 3897464 complement(1699913..1701610) 1 NC_007775.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1701610 ilvD 3897464 ilvD Synechococcus sp. JA-3-3Ab dihydroxy-acid dehydratase YP_475116.1 1699913 R 321327 CDS YP_475117.1 86606354 3897465 1701867..1702865 1 NC_007775.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 1702865 fbp 3897465 fbp Synechococcus sp. JA-3-3Ab fructose-1,6-bisphosphatase YP_475117.1 1701867 D 321327 CDS YP_475118.1 86606355 3897466 1702907..1704457 1 NC_007775.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1704457 zwf 3897466 zwf Synechococcus sp. JA-3-3Ab glucose-6-phosphate 1-dehydrogenase YP_475118.1 1702907 D 321327 CDS YP_475119.1 86606356 3897467 1704610..1705548 1 NC_007775.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; hypothetical protein 1705548 3897467 CYA_1700 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475119.1 1704610 D 321327 CDS YP_475120.1 86606357 3897468 complement(1705551..1707500) 1 NC_007775.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1707500 dxs 3897468 dxs Synechococcus sp. JA-3-3Ab 1-deoxy-D-xylulose-5-phosphate synthase YP_475120.1 1705551 R 321327 CDS YP_475121.1 86606358 3897469 1708008..1708988 1 NC_007775.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 1708988 cysK 3897469 cysK Synechococcus sp. JA-3-3Ab cysteine synthase A YP_475121.1 1708008 D 321327 CDS YP_475122.1 86606359 3897470 complement(1709018..1711828) 1 NC_007775.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1711828 ileS 3897470 ileS Synechococcus sp. JA-3-3Ab isoleucyl-tRNA synthetase YP_475122.1 1709018 R 321327 CDS YP_475123.1 86606360 3897471 complement(1712348..1713088) 1 NC_007775.1 hypothetical protein 1713088 3897471 CYA_1704 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475123.1 1712348 R 321327 CDS YP_475124.1 86606361 3897472 1713324..1713767 1 NC_007775.1 identified by match to protein family HMM PF00581; rhodanese domain-containing protein 1713767 3897472 CYA_1705 Synechococcus sp. JA-3-3Ab rhodanese domain-containing protein YP_475124.1 1713324 D 321327 CDS YP_475125.1 86606362 3897473 1713944..1715746 1 NC_007775.1 identified by match to protein family HMM PF00557; M24B family peptidase 1715746 3897473 CYA_1706 Synechococcus sp. JA-3-3Ab M24B family peptidase YP_475125.1 1713944 D 321327 CDS YP_475126.1 86606363 3897474 1715835..1716260 1 NC_007775.1 hypothetical protein 1716260 3897474 CYA_1707 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475126.1 1715835 D 321327 CDS YP_475127.1 86606364 3897476 complement(1717994..1719319) 1 NC_007775.1 identified by match to protein family HMM PF00155; aminotransferase, classes I and II 1719319 3897476 CYA_1709 Synechococcus sp. JA-3-3Ab aminotransferase, classes I and II YP_475127.1 1717994 R 321327 CDS YP_475128.1 86606365 3897477 complement(1719052..1720002) 1 NC_007775.1 hypothetical protein 1720002 3897477 CYA_1710 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475128.1 1719052 R 321327 CDS YP_475129.1 86606366 3897478 complement(1720146..1720778) 1 NC_007775.1 hypothetical protein 1720778 3897478 CYA_1711 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475129.1 1720146 R 321327 CDS YP_475130.1 86606367 3897479 complement(1720790..1721488) 1 NC_007775.1 identified by match to protein family HMM PF00215; match to protein family HMM TIGR01740; orotidine 5'-phosphate decarboxylase 1721488 pyrF 3897479 pyrF Synechococcus sp. JA-3-3Ab orotidine 5'-phosphate decarboxylase YP_475130.1 1720790 R 321327 CDS YP_475131.1 86606368 3897480 complement(1721509..1722021) 1 NC_007775.1 hypothetical protein 1722021 3897480 CYA_1713 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475131.1 1721509 R 321327 CDS YP_475132.1 86606369 3897262 complement(1721996..1722337) 1 NC_007775.1 hypothetical protein 1722337 3897262 CYA_1714 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475132.1 1721996 R 321327 CDS YP_475133.1 86606370 3897263 complement(1722402..1723214) 1 NC_007775.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein 1723214 3897263 CYA_1715 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475133.1 1722402 R 321327 CDS YP_475134.1 86606371 3897264 complement(1723211..1723624) 1 NC_007775.1 identified by similarity to GB:BAC08662.1; hypothetical protein 1723624 3897264 CYA_1716 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475134.1 1723211 R 321327 CDS YP_475135.1 86606372 3897265 1723769..1724923 1 NC_007775.1 identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832; anion:cation symporter (ACS) family protein 1724923 3897265 CYA_1717 Synechococcus sp. JA-3-3Ab anion:cation symporter (ACS) family protein YP_475135.1 1723769 D 321327 CDS YP_475136.1 86606373 3897266 1724940..1725356 1 NC_007775.1 identified by similarity to PIR:AC2156; match to protein family HMM PF02656; hypothetical protein 1725356 3897266 CYA_1719 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475136.1 1724940 D 321327 CDS YP_475137.1 86606374 3897267 complement(1725323..1725685) 1 NC_007775.1 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 1725685 3897267 CYA_1718 Synechococcus sp. JA-3-3Ab ArsR family transcriptional regulator YP_475137.1 1725323 R 321327 CDS YP_475138.1 86606375 3897268 1725843..1726559 1 NC_007775.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 1726559 3897268 CYA_1720 Synechococcus sp. JA-3-3Ab metallo-beta-lactamase family protein YP_475138.1 1725843 D 321327 CDS YP_475139.1 86606376 3897269 1726657..1727124 1 NC_007775.1 identified by match to protein family HMM PF01724; hypothetical protein 1727124 3897269 CYA_1721 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475139.1 1726657 D 321327 CDS YP_475140.1 86606377 3897270 1727144..1727725 1 NC_007775.1 identified by match to protein family HMM PF00581; rhodanese domain-containing protein 1727725 3897270 CYA_1722 Synechococcus sp. JA-3-3Ab rhodanese domain-containing protein YP_475140.1 1727144 D 321327 CDS YP_475141.1 86606378 3897271 1727722..1729503 1 NC_007775.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815; sulfate permease 1729503 sulP 3897271 sulP Synechococcus sp. JA-3-3Ab sulfate permease YP_475141.1 1727722 D 321327 CDS YP_475142.1 86606379 3897272 complement(1729478..1730680) 1 NC_007775.1 identified by similarity to GB:BAC10028.1; hypothetical protein 1730680 3897272 CYA_1723 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475142.1 1729478 R 321327 CDS YP_475143.1 86606380 3897273 1730944..1731276 1 NC_007775.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 1731276 trx-2 3897273 trx-2 Synechococcus sp. JA-3-3Ab thioredoxin YP_475143.1 1730944 D 321327 CDS YP_475144.1 86606381 3897274 1731290..1732072 1 NC_007775.1 lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism; lipoyltransferase 1732072 lipB 3897274 lipB Synechococcus sp. JA-3-3Ab lipoyltransferase YP_475144.1 1731290 D 321327 CDS YP_475145.1 86606382 3897275 complement(1732069..1732401) 1 NC_007775.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1732401 3897275 CYA_1726 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475145.1 1732069 R 321327 CDS YP_475146.1 86606383 3897276 complement(1732498..1733079) 1 NC_007775.1 identified by similarity to GB:BAD70760.1; match to protein family HMM PF05685; hypothetical protein 1733079 3897276 CYA_1728 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475146.1 1732498 R 321327 CDS YP_475147.1 86606384 3897277 1733213..1734508 1 NC_007775.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1734508 purB 3897277 purB Synechococcus sp. JA-3-3Ab adenylosuccinate lyase YP_475147.1 1733213 D 321327 CDS YP_475148.1 86606385 3897278 1734518..1735498 1 NC_007775.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1735498 pyrB 3897278 pyrB Synechococcus sp. JA-3-3Ab aspartate carbamoyltransferase catalytic subunit YP_475148.1 1734518 D 321327 CDS YP_475149.1 86606386 3897279 complement(1735747..1735908) 1 NC_007775.1 hypothetical protein 1735908 3897279 CYA_1731 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475149.1 1735747 R 321327 CDS YP_475150.1 86606387 3897280 1736016..1737077 1 NC_007775.1 identified by similarity to SP:P06128; match to protein family HMM PF01547; match to protein family HMM TIGR00975; phosphate ABC transporter, phosphate-binding protein 1737077 pstS-3 3897280 pstS-3 Synechococcus sp. JA-3-3Ab phosphate ABC transporter, phosphate-binding protein YP_475150.1 1736016 D 321327 CDS YP_475151.1 86606388 3897281 1737226..1738209 1 NC_007775.1 identified by similarity to SP:P07653; match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter, permease protein PstC 1738209 pstC-2 3897281 pstC-2 Synechococcus sp. JA-3-3Ab phosphate ABC transporter, permease protein PstC YP_475151.1 1737226 D 321327 CDS YP_475152.1 86606389 3898528 1738248..1739141 1 NC_007775.1 identified by similarity to SP:P07654; match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 1739141 pstA-2 3898528 pstA-2 Synechococcus sp. JA-3-3Ab phosphate ABC transporter permease YP_475152.1 1738248 D 321327 CDS YP_475153.1 86606390 3898529 1739212..1740009 1 NC_007775.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1740009 pstB-2 3898529 pstB-2 Synechococcus sp. JA-3-3Ab phosphate transporter ATP-binding protein YP_475153.1 1739212 D 321327 CDS YP_475154.1 86606391 3898530 1740122..1741489 1 NC_007775.1 identified by match to protein family HMM PF01565; FAD-binding protein 1741489 3898530 CYA_1736 Synechococcus sp. JA-3-3Ab FAD-binding protein YP_475154.1 1740122 D 321327 CDS YP_475155.1 86606392 3898531 complement(1741648..1742082) 1 NC_007775.1 identified by match to protein family HMM PF01724; hypothetical protein 1742082 3898531 CYA_1737 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475155.1 1741648 R 321327 CDS YP_475156.1 86606393 3898532 complement(1742438..1743493) 1 NC_007775.1 identified by match to protein family HMM PF03773; permease 1743493 3898532 CYA_1738 Synechococcus sp. JA-3-3Ab permease YP_475156.1 1742438 R 321327 CDS YP_475157.1 86606394 3898533 complement(1743572..1744708) 1 NC_007775.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase 1744708 3898533 CYA_1739 Synechococcus sp. JA-3-3Ab citrate synthase YP_475157.1 1743572 R 321327 CDS YP_475158.1 86606395 3898534 complement(1744902..1745444) 1 NC_007775.1 identified by similarity to PIR:AI2373; match to protein family HMM PF05991; hypothetical protein 1745444 3898534 CYA_1740 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475158.1 1744902 R 321327 CDS YP_475159.1 86606396 3898535 1745846..1747699 1 NC_007775.1 identified by match to protein family HMM PF03109; hypothetical protein 1747699 3898535 CYA_1741 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475159.1 1745846 D 321327 CDS YP_475160.1 86606397 3898536 complement(1747942..1748325) 1 NC_007775.1 hypothetical protein 1748325 3898536 CYA_1742 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475160.1 1747942 R 321327 CDS YP_475161.1 86606398 3898537 complement(1748697..1749167) 1 NC_007775.1 identified by similarity to GB:BAC88789.1; hypothetical protein 1749167 3898537 CYA_1743 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475161.1 1748697 R 321327 CDS YP_475162.1 86606399 3898538 1749395..1749670 1 NC_007775.1 identified by similarity to GB:BAC09035.1; match to protein family HMM PF05421; hypothetical protein 1749670 3898538 CYA_1744 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475162.1 1749395 D 321327 CDS YP_475163.1 86606400 3898539 1749682..1749852 1 NC_007775.1 light-independent protochlorophyllide reductase subunit B, truncation 1749852 3898539 CYA_1745 Synechococcus sp. JA-3-3Ab light-independent protochlorophyllide reductase subunit B, truncation YP_475163.1 1749682 D 321327 CDS YP_475164.1 86606401 3898540 1749936..1751471 1 NC_007775.1 identified by match to protein family HMM PF02163; M50B family peptidase 1751471 3898540 CYA_1746 Synechococcus sp. JA-3-3Ab M50B family peptidase YP_475164.1 1749936 D 321327 CDS YP_475165.1 86606402 3898541 1751516..1753342 1 NC_007775.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase 1753342 3898541 CYA_1747 Synechococcus sp. JA-3-3Ab aspartate kinase YP_475165.1 1751516 D 321327 CDS YP_475166.1 86606403 3898542 complement(1753541..1754599) 1 NC_007775.1 identified by match to protein family HMM PF00124; match to protein family HMM TIGR01151; photosystem II protein D1 1754599 psbA-2 3898542 psbA-2 Synechococcus sp. JA-3-3Ab photosystem II protein D1 YP_475166.1 1753541 R 321327 CDS YP_475167.1 86606404 3898543 complement(1754923..1758147) 1 NC_007775.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1758147 carB 3898543 carB Synechococcus sp. JA-3-3Ab carbamoyl phosphate synthase large subunit YP_475167.1 1754923 R 321327 CDS YP_475168.1 86606405 3898544 complement(1758557..1759216) 1 NC_007775.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit B 1759216 3898544 CYA_1750 Synechococcus sp. JA-3-3Ab monovalent cation/H+ antiporter subunit B YP_475168.1 1758557 R 321327 CDS YP_475169.1 86606406 3898545 complement(1759213..1759734) 1 NC_007775.1 hypothetical protein 1759734 3898545 CYA_1751 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475169.1 1759213 R 321327 CDS YP_475170.1 86606407 3898546 complement(1759744..1760025) 1 NC_007775.1 hypothetical protein 1760025 3898546 CYA_1752 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475170.1 1759744 R 321327 CDS YP_475171.1 86606408 3898547 complement(1760037..1760288) 1 NC_007775.1 hypothetical protein 1760288 3898547 CYA_1753 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475171.1 1760037 R 321327 CDS YP_475172.1 86606409 3898548 complement(1760285..1760671) 1 NC_007775.1 hypothetical protein 1760671 3898548 CYA_1754 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475172.1 1760285 R 321327 CDS YP_475173.1 86606410 3898549 complement(1760673..1762163) 1 NC_007775.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D 1762163 3898549 CYA_1755 Synechococcus sp. JA-3-3Ab monovalent cation/H+ antiporter subunit D YP_475173.1 1760673 R 321327 CDS YP_475174.1 86606411 3898550 complement(1762156..1762494) 1 NC_007775.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C 1762494 3898550 CYA_1756 Synechococcus sp. JA-3-3Ab monovalent cation/H+ antiporter subunit C YP_475174.1 1762156 R 321327 CDS YP_475175.1 86606412 3898552 1764135..1764590 1 NC_007775.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1764590 3898552 CYA_1758 Synechococcus sp. JA-3-3Ab MarR family transcriptional regulator YP_475175.1 1764135 D 321327 CDS YP_475176.1 86606413 3898553 complement(1764600..1764986) 1 NC_007775.1 hypothetical protein 1764986 3898553 CYA_1759 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475176.1 1764600 R 321327 CDS YP_475177.1 86606414 3898554 1765417..1765914 1 NC_007775.1 identified by match to protein family HMM PF05154; TM2 domain-containing protein 1765914 3898554 CYA_1760 Synechococcus sp. JA-3-3Ab TM2 domain-containing protein YP_475177.1 1765417 D 321327 CDS YP_475178.1 86606415 3898555 complement(1765922..1766704) 1 NC_007775.1 identified by match to protein family HMM PF01061; ABC-2 type transporter, permease 1766704 3898555 CYA_1761 Synechococcus sp. JA-3-3Ab ABC-2 type transporter, permease YP_475178.1 1765922 R 321327 CDS YP_475179.1 86606416 3898556 complement(1766701..1767636) 1 NC_007775.1 identified by similarity to SP:P32010; match to protein family HMM PF00005; drug exporter ABC transporter ATP-binding protein 1767636 3898556 CYA_1762 Synechococcus sp. JA-3-3Ab drug exporter ABC transporter ATP-binding protein YP_475179.1 1766701 R 321327 CDS YP_475180.1 86606417 3898557 complement(1767740..1771210) 1 NC_007775.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 1771210 mfd 3898557 mfd Synechococcus sp. JA-3-3Ab transcription-repair coupling factor YP_475180.1 1767740 R 321327 CDS YP_475181.1 86606418 3898558 1771687..1773120 1 NC_007775.1 identified by similarity to SP:P11026; match to protein family HMM PF01654; cytochrome d ubiquinol oxidase, subunit I 1773120 cydA 3898558 cydA Synechococcus sp. JA-3-3Ab cytochrome d ubiquinol oxidase, subunit I YP_475181.1 1771687 D 321327 CDS YP_475182.1 86606419 3898559 1773202..1774251 1 NC_007775.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase, subunit II 1774251 cydB 3898559 cydB Synechococcus sp. JA-3-3Ab cytochrome d ubiquinol oxidase, subunit II YP_475182.1 1773202 D 321327 CDS YP_475183.1 86606420 3898560 complement(1774248..1774364) 1 NC_007775.1 hypothetical protein 1774364 3898560 CYA_1765 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475183.1 1774248 R 321327 CDS YP_475184.1 86606421 3898561 complement(1774361..1776115) 1 NC_007775.1 identified by match to protein family HMM PF05552; hypothetical protein 1776115 3898561 CYA_1767 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475184.1 1774361 R 321327 CDS YP_475185.1 86606422 3898562 complement(1776482..1777009) 1 NC_007775.1 identified by match to protein family HMM PF00583; ribosomal-protein-alanine acetyltransferase 1777009 rimI 3898562 rimI Synechococcus sp. JA-3-3Ab ribosomal-protein-alanine acetyltransferase YP_475185.1 1776482 R 321327 CDS YP_475186.1 86606423 3898563 complement(1777016..1777441) 1 NC_007775.1 hypothetical protein 1777441 3898563 CYA_1769 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475186.1 1777016 R 321327 CDS YP_475187.1 86606424 3898564 complement(1777438..1778568) 1 NC_007775.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 1778568 purK 3898564 purK Synechococcus sp. JA-3-3Ab phosphoribosylaminoimidazole carboxylase ATPase subunit YP_475187.1 1777438 R 321327 CDS YP_475188.1 86606425 3898565 1778635..1778847 1 NC_007775.1 hypothetical protein 1778847 3898565 CYA_1771 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475188.1 1778635 D 321327 CDS YP_475189.1 86606426 3898585 1778902..1779495 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 1779495 3898585 CYA_1772 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_475189.1 1778902 D 321327 CDS YP_475190.1 86606427 3898586 1779350..1780630 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 1780630 3898586 CYA_1773 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_475190.1 1779350 D 321327 CDS YP_475191.1 86606428 3898587 1780608..1781207 1 NC_007775.1 hypothetical protein 1781207 3898587 CYA_1774 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475191.1 1780608 D 321327 CDS YP_475192.1 86606429 3898588 1781213..1781974 1 NC_007775.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1781974 trmD 3898588 trmD Synechococcus sp. JA-3-3Ab tRNA (guanine-N(1)-)-methyltransferase YP_475192.1 1781213 D 321327 CDS YP_475193.1 86606430 3898589 1781965..1782318 1 NC_007775.1 hypothetical protein 1782318 3898589 CYA_1776 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475193.1 1781965 D 321327 CDS YP_475194.1 86606431 3898590 1782420..1782686 1 NC_007775.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 1782686 secE 3898590 secE Synechococcus sp. JA-3-3Ab preprotein translocase subunit SecE YP_475194.1 1782420 D 321327 CDS YP_475195.1 86606432 3898591 1782770..1783441 1 NC_007775.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 1783441 nusG 3898591 nusG Synechococcus sp. JA-3-3Ab transcription antitermination protein NusG YP_475195.1 1782770 D 321327 CDS YP_475196.1 86606433 3898592 1783451..1783876 1 NC_007775.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 1783876 rplK 3898592 rplK Synechococcus sp. JA-3-3Ab 50S ribosomal protein L11 YP_475196.1 1783451 D 321327 CDS YP_475197.1 86606434 3898593 1783976..1784686 1 NC_007775.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1784686 rplA 3898593 rplA Synechococcus sp. JA-3-3Ab 50S ribosomal protein L1 YP_475197.1 1783976 D 321327 CDS YP_475198.1 86606435 3898594 1784679..1784789 1 NC_007775.1 hypothetical protein 1784789 3898594 CYA_1781 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475198.1 1784679 D 321327 CDS YP_475199.1 86606436 3898595 1785005..1785568 1 NC_007775.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 1785568 rplJ 3898595 rplJ Synechococcus sp. JA-3-3Ab 50S ribosomal protein L10 YP_475199.1 1785005 D 321327 CDS YP_475200.1 86606437 3898596 1785642..1786055 1 NC_007775.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 1786055 rplL 3898596 rplL Synechococcus sp. JA-3-3Ab 50S ribosomal protein L7/L12 YP_475200.1 1785642 D 321327 CDS YP_475201.1 86606438 3898597 complement(1785659..1786702) 1 NC_007775.1 hypothetical protein 1786702 3898597 CYA_1783 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475201.1 1785659 R 321327 CDS YP_475202.1 86606439 3898598 1786385..1787563 1 NC_007775.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 1787563 oxaA 3898598 oxaA Synechococcus sp. JA-3-3Ab inner membrane protein translocase component YidC YP_475202.1 1786385 D 321327 CDS YP_475203.1 86606440 3898599 1787607..1788275 1 NC_007775.1 identified by match to protein family HMM PF01424; R3H domain-containing protein 1788275 3898599 CYA_1786 Synechococcus sp. JA-3-3Ab R3H domain-containing protein YP_475203.1 1787607 D 321327 CDS YP_475204.1 86606441 3898600 1788361..1788864 1 NC_007775.1 identified by match to protein family HMM PF02620; hypothetical protein 1788864 3898600 CYA_1787 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475204.1 1788361 D 321327 CDS YP_475205.1 86606442 3898601 1788917..1789828 1 NC_007775.1 phytyltransferase acting specifically in the tocopherol biosynthetic pathway; member of the UbiA prenyltransferase family which catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; tocopherol phytyltransferase 1789828 ubiA 3898601 ubiA Synechococcus sp. JA-3-3Ab tocopherol phytyltransferase YP_475205.1 1788917 D 321327 CDS YP_475206.1 86606443 3898602 complement(1789887..1790675) 1 NC_007775.1 identified by match to protein family HMM PF01479; S4 domain-containing protein 1790675 3898602 CYA_1789 Synechococcus sp. JA-3-3Ab S4 domain-containing protein YP_475206.1 1789887 R 321327 CDS YP_475207.1 86606444 3897984 complement(1790928..1792973) 1 NC_007775.1 identified by similarity to SP:Q01262; match to protein family HMM PF01968; match to protein family HMM PF05378; hydantoin utilization protein A 1792973 3897984 CYA_1791 Synechococcus sp. JA-3-3Ab hydantoin utilization protein A YP_475207.1 1790928 R 321327 CDS YP_475208.1 86606445 3897985 complement(1793011..1794354) 1 NC_007775.1 identified by similarity to PIR:AH2006; hypothetical protein 1794354 3897985 CYA_1792 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475208.1 1793011 R 321327 CDS YP_475209.1 86606446 3897986 complement(1794531..1795040) 1 NC_007775.1 hypothetical protein 1795040 3897986 CYA_1793 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475209.1 1794531 R 321327 CDS YP_475210.1 86606447 3897987 complement(1795065..1795619) 1 NC_007775.1 hypothetical protein 1795619 3897987 CYA_1794 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475210.1 1795065 R 321327 CDS YP_475211.1 86606448 3897988 complement(1795708..1797021) 1 NC_007775.1 identified by similarity to SP:Q55669; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; C-terminal processing peptidase 1797021 prc-1 3897988 prc-1 Synechococcus sp. JA-3-3Ab C-terminal processing peptidase YP_475211.1 1795708 R 321327 CDS YP_475212.1 86606449 3897989 1797227..1797874 1 NC_007775.1 electron transport protein; cytochrome b6 1797874 petB 3897989 petB Synechococcus sp. JA-3-3Ab cytochrome b6 YP_475212.1 1797227 D 321327 CDS YP_475213.1 86606450 3897990 1797970..1798464 1 NC_007775.1 PetD, with cytochrome b6, cytochrome F, and the Rieske protein, makes up the large subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I; cytochrome b6-f complex subunit IV 1798464 petD 3897990 petD Synechococcus sp. JA-3-3Ab cytochrome b6-f complex subunit IV YP_475213.1 1797970 D 321327 CDS YP_475214.1 86606451 3897991 1798607..1799752 1 NC_007775.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1799752 leuB 3897991 leuB Synechococcus sp. JA-3-3Ab 3-isopropylmalate dehydrogenase YP_475214.1 1798607 D 321327 CDS YP_475215.1 86606452 3897992 complement(1799868..1800542) 1 NC_007775.1 identified by similarity to SP:Q05061; match to protein family HMM PF00027; match to protein family HMM PF00325; nitrogen-responsive regulatory protein 1800542 ntcA 3897992 ntcA Synechococcus sp. JA-3-3Ab nitrogen-responsive regulatory protein YP_475215.1 1799868 R 321327 CDS YP_475216.1 86606453 3897993 1800809..1802608 1 NC_007775.1 identified by match to protein family HMM PF00595; match to protein family HMM PF05299; M61 family peptidase 1802608 3897993 CYA_1800 Synechococcus sp. JA-3-3Ab M61 family peptidase YP_475216.1 1800809 D 321327 CDS YP_475217.1 86606454 3897994 1802690..1803814 1 NC_007775.1 hypothetical protein 1803814 3897994 CYA_1801 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475217.1 1802690 D 321327 CDS YP_475218.1 86606455 3897995 complement(1803822..1804709) 1 NC_007775.1 hypothetical protein 1804709 3897995 CYA_1802 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475218.1 1803822 R 321327 CDS YP_475219.1 86606456 3897996 1805069..1805722 1 NC_007775.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1805722 upp 3897996 upp Synechococcus sp. JA-3-3Ab uracil phosphoribosyltransferase YP_475219.1 1805069 D 321327 CDS YP_475220.1 86606457 3897997 1806029..1806937 1 NC_007775.1 catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 1806937 3897997 CYA_1804 Synechococcus sp. JA-3-3Ab mannosyl-3-phosphoglycerate phosphatase YP_475220.1 1806029 D 321327 CDS YP_475221.1 86606458 3897998 1807062..1807631 1 NC_007775.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1807631 3897998 CYA_1805 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475221.1 1807062 D 321327 CDS YP_475222.1 86606459 3897999 1807825..1808778 1 NC_007775.1 identified by match to protein family HMM PF00226; DnaJ domain-containing protein 1808778 3897999 CYA_1806 Synechococcus sp. JA-3-3Ab DnaJ domain-containing protein YP_475222.1 1807825 D 321327 CDS YP_475223.1 86606460 3898000 complement(1808788..1809849) 1 NC_007775.1 hypothetical protein 1809849 3898000 CYA_1807 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475223.1 1808788 R 321327 CDS YP_475224.1 86606461 3898001 1810185..1810472 1 NC_007775.1 identified by similarity to PIR:AB1857; hypothetical protein 1810472 3898001 CYA_1808 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475224.1 1810185 D 321327 CDS YP_475225.1 86606462 3898002 1810515..1811885 1 NC_007775.1 identified by match to protein family HMM PF04459; hypothetical protein 1811885 3898002 CYA_1809 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475225.1 1810515 D 321327 CDS YP_475226.1 86606463 3898566 1811890..1814445 1 NC_007775.1 identified by match to protein family HMM PF03699; hypothetical protein 1814445 3898566 CYA_1810 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475226.1 1811890 D 321327 CDS YP_475227.1 86606464 3898567 1814550..1815614 1 NC_007775.1 identified by match to protein family HMM PF00124; match to protein family HMM TIGR01151; photosystem II protein D1 1815614 psbA-3 3898567 psbA-3 Synechococcus sp. JA-3-3Ab photosystem II protein D1 YP_475227.1 1814550 D 321327 CDS YP_475228.1 86606465 3898568 1815754..1816890 1 NC_007775.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1816890 ruvB 3898568 ruvB Synechococcus sp. JA-3-3Ab Holliday junction DNA helicase RuvB YP_475228.1 1815754 D 321327 CDS YP_475229.1 86606466 3898570 complement(1817211..1819907) 1 NC_007775.1 identified by match to protein family HMM PF00427; match to protein family HMM PF00502; phycobilisome 120 kDa linker polypeptide, core 1819907 3898570 CYA_1814 Synechococcus sp. JA-3-3Ab phycobilisome 120 kDa linker polypeptide, core YP_475229.1 1817211 R 321327 CDS YP_475230.1 86606467 3898571 1820137..1822299 1 NC_007775.1 identified by match to protein family HMM PF07719; hypothetical protein 1822299 3898571 CYA_1816 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475230.1 1820137 D 321327 CDS YP_475231.1 86606468 3898573 complement(1822540..1823742) 1 NC_007775.1 identified by match to protein family HMM PF07690; major facilitator transporter 1823742 3898573 CYA_1817 Synechococcus sp. JA-3-3Ab major facilitator transporter YP_475231.1 1822540 R 321327 CDS YP_475232.1 86606469 3898574 complement(1823895..1824095) 1 NC_007775.1 identified by match to protein family HMM PF06988; NifT/FixU family protein 1824095 3898574 CYA_1818 Synechococcus sp. JA-3-3Ab NifT/FixU family protein YP_475232.1 1823895 R 321327 CDS YP_475233.1 86606470 3898575 complement(1824092..1824355) 1 NC_007775.1 identified by match to protein family HMM PF04319; NifZ protein 1824355 nifZ 3898575 nifZ Synechococcus sp. JA-3-3Ab NifZ protein YP_475233.1 1824092 R 321327 CDS YP_475234.1 86606471 3898576 complement(1824491..1825678) 1 NC_007775.1 in Methanococcus jannaschii this protein catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate; functions in alphaketosuberate synthesis which is a precursor in coenzyme B and biotin synthesis; trans-homoaconitate synthase 1825678 aksA 3898576 aksA Synechococcus sp. JA-3-3Ab trans-homoaconitate synthase YP_475234.1 1824491 R 321327 CDS YP_475235.1 86606472 3898577 1825837..1825938 1 NC_007775.1 hypothetical protein 1825938 3898577 CYA_1822 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475235.1 1825837 D 321327 CDS YP_475236.1 86606473 3898578 complement(1825927..1827462) 1 NC_007775.1 identified by similarity to SP:Q55030; match to protein family HMM PF00148; match to protein family HMM TIGR01286; nitrogenase molybdenum-iron protein subunit beta 1827462 nifK 3898578 nifK Synechococcus sp. JA-3-3Ab nitrogenase molybdenum-iron protein subunit beta YP_475236.1 1825927 R 321327 CDS YP_475237.1 86606474 3898579 complement(1827528..1828991) 1 NC_007775.1 identified by similarity to SP:Q00239; match to protein family HMM PF00148; match to protein family HMM TIGR01282; match to protein family HMM TIGR01862; nitrogenase molybdenum-iron protein subunit alpha 1828991 nifD 3898579 nifD Synechococcus sp. JA-3-3Ab nitrogenase molybdenum-iron protein subunit alpha YP_475237.1 1827528 R 321327 CDS YP_475238.1 86606475 3898580 complement(1829088..1829966) 1 NC_007775.1 identified by match to protein family HMM PF00142; match to protein family HMM TIGR01287; nitrogenase iron protein 1829966 nifH 3898580 nifH Synechococcus sp. JA-3-3Ab nitrogenase iron protein YP_475238.1 1829088 R 321327 CDS YP_475239.1 86606476 3898581 complement(1830244..1831182) 1 NC_007775.1 identified by match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324; match to protein family HMM TIGR02000; Fe-S cluster assembly protein NifU 1831182 nifU 3898581 nifU Synechococcus sp. JA-3-3Ab Fe-S cluster assembly protein NifU YP_475239.1 1830244 R 321327 CDS YP_475240.1 86606477 3898582 complement(1831239..1832429) 1 NC_007775.1 identified by similarity to SP:P05341; match to protein family HMM PF00266; match to protein family HMM PF01212; cysteine desulfurase 1832429 nifS 3898582 nifS Synechococcus sp. JA-3-3Ab cysteine desulfurase YP_475240.1 1831239 R 321327 CDS YP_475241.1 86606478 3898583 complement(1832478..1832771) 1 NC_007775.1 identified by similarity to SP:P46050; match to protein family HMM PF00037; ferredoxin, 4Fe-4S 1832771 3898583 CYA_1827 Synechococcus sp. JA-3-3Ab ferredoxin, 4Fe-4S YP_475241.1 1832478 R 321327 CDS YP_475242.1 86606479 3898584 complement(1832797..1834233) 1 NC_007775.1 identified by similarity to SP:P20627; match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290; nitrogenase cofactor biosynthesis protein NifB 1834233 nifB 3898584 nifB Synechococcus sp. JA-3-3Ab nitrogenase cofactor biosynthesis protein NifB YP_475242.1 1832797 R 321327 CDS YP_475243.1 86606480 3897926 complement(1834386..1834505) 1 NC_007775.1 hypothetical protein 1834505 3897926 CYA_1829 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475243.1 1834386 R 321327 CDS YP_475244.1 86606481 3897927 1835005..1835298 1 NC_007775.1 hypothetical protein 1835298 3897927 CYA_1830 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475244.1 1835005 D 321327 CDS YP_475245.1 86606482 3897928 1835353..1835898 1 NC_007775.1 identified by similarity to GB:BAB75507.1; match to protein family HMM PF00210; nutrient-stress induced DNA binding protein 1835898 dpsA 3897928 dpsA Synechococcus sp. JA-3-3Ab nutrient-stress induced DNA binding protein YP_475245.1 1835353 D 321327 CDS YP_475246.1 86606483 3897929 1835941..1836165 1 NC_007775.1 hypothetical protein 1836165 3897929 CYA_1832 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475246.1 1835941 D 321327 CDS YP_475247.1 86606484 3897930 1836169..1836528 1 NC_007775.1 identified by match to protein family HMM PF06967; Mo-dependent nitrogenase family protein 1836528 3897930 CYA_1833 Synechococcus sp. JA-3-3Ab Mo-dependent nitrogenase family protein YP_475247.1 1836169 D 321327 CDS YP_475248.1 86606485 3897931 1836519..1837925 1 NC_007775.1 identified by similarity to SP:P55673; match to protein family HMM PF00148; match to protein family HMM TIGR01283; nitrogenase MoFe cofactor biosynthesis protein NifE 1837925 nifE 3897931 nifE Synechococcus sp. JA-3-3Ab nitrogenase MoFe cofactor biosynthesis protein NifE YP_475248.1 1836519 D 321327 CDS YP_475249.1 86606486 3897932 1837913..1839250 1 NC_007775.1 functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifN 1839250 nifN 3897932 nifN Synechococcus sp. JA-3-3Ab nitrogenase molybdenum-cofactor biosynthesis protein NifN YP_475249.1 1837913 D 321327 CDS YP_475250.1 86606487 3897933 1839325..1839744 1 NC_007775.1 identified by similarity to SP:P19078; match to protein family HMM PF02579; match to protein family HMM TIGR02663; nitrogenase cofactor biosynthesis protein NifX 1839744 nifX 3897933 nifX Synechococcus sp. JA-3-3Ab nitrogenase cofactor biosynthesis protein NifX YP_475250.1 1839325 D 321327 CDS YP_475251.1 86606488 3897934 1839747..1840202 1 NC_007775.1 identified by similarity to GB:AAC35200.1; match to protein family HMM PF03270; hypothetical protein 1840202 3897934 CYA_1837 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475251.1 1839747 D 321327 CDS YP_475252.1 86606489 3897935 1840269..1840532 1 NC_007775.1 identified by match to protein family HMM PF05082; hypothetical protein 1840532 3897935 CYA_1838 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475252.1 1840269 D 321327 CDS YP_475253.1 86606490 3897936 1840529..1840894 1 NC_007775.1 associates with NifD and may protect the nitrogenase Fe-Mo protein from oxidative damage; nitrogenase stabilizing/protective protein 1840894 nifW 3897936 nifW Synechococcus sp. JA-3-3Ab nitrogenase stabilizing/protective protein YP_475253.1 1840529 D 321327 CDS YP_475254.1 86606491 3897937 1840937..1841236 1 NC_007775.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008; ferredoxin, 2Fe-2S 1841236 3897937 CYA_1840 Synechococcus sp. JA-3-3Ab ferredoxin, 2Fe-2S YP_475254.1 1840937 D 321327 CDS YP_475255.1 86606492 3897938 1841265..1841642 1 NC_007775.1 identified by match to protein family HMM PF04023; FeoA domain-containing protein 1841642 3897938 CYA_1841 Synechococcus sp. JA-3-3Ab FeoA domain-containing protein YP_475255.1 1841265 D 321327 CDS YP_475256.1 86606493 3897939 1841737..1841994 1 NC_007775.1 hypothetical protein 1841994 3897939 CYA_1842 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475256.1 1841737 D 321327 CDS YP_475257.1 86606494 3897940 1842337..1843989 1 NC_007775.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01381; transcriptional regulator PatB 1843989 3897940 CYA_1843 Synechococcus sp. JA-3-3Ab transcriptional regulator PatB YP_475257.1 1842337 D 321327 CDS YP_475258.1 86606495 3897941 complement(1844018..1844227) 1 NC_007775.1 identified by match to protein family HMM PF03459; match to protein family HMM TIGR00638; molybdenum-pterin-binding domain-containing protein 1844227 3897941 CYA_1844 Synechococcus sp. JA-3-3Ab molybdenum-pterin-binding domain-containing protein YP_475258.1 1844018 R 321327 CDS YP_475259.1 86606496 3897942 1844477..1845244 1 NC_007775.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdate ABC transporter molybdate-binding protein 1845244 modA 3897942 modA Synechococcus sp. JA-3-3Ab molybdate ABC transporter molybdate-binding protein YP_475259.1 1844477 D 321327 CDS YP_475260.1 86606497 3897943 1845268..1847055 1 NC_007775.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR02141; molybdate ABC transporter permease 1847055 modB 3897943 modB Synechococcus sp. JA-3-3Ab molybdate ABC transporter permease YP_475260.1 1845268 D 321327 CDS YP_475261.1 86606498 3897944 complement(1847074..1848795) 1 NC_007775.1 identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466; cbiG protein/precorrin-3B C17-methyltransferase 1848795 cbiG/cobJ-2 3897944 cbiG/cobJ-2 Synechococcus sp. JA-3-3Ab cbiG protein/precorrin-3B C17-methyltransferase YP_475261.1 1847074 R 321327 CDS YP_475262.1 86606499 3899902 1849177..1850049 1 NC_007775.1 hypothetical protein 1850049 3899902 CYA_1848 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475262.1 1849177 D 321327 CDS YP_475263.1 86606500 3899903 1850154..1851218 1 NC_007775.1 identified by match to protein family HMM PF00124; match to protein family HMM TIGR01151; photosystem II protein D1 1851218 psbA-4 3899903 psbA-4 Synechococcus sp. JA-3-3Ab photosystem II protein D1 YP_475263.1 1850154 D 321327 CDS YP_475264.1 86606501 3899904 1851392..1852504 1 NC_007775.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1852504 ruvB 3899904 ruvB Synechococcus sp. JA-3-3Ab Holliday junction DNA helicase RuvB YP_475264.1 1851392 D 321327 CDS YP_475265.1 86606502 3899905 complement(1852542..1855241) 1 NC_007775.1 identified by match to protein family HMM PF00427; match to protein family HMM PF00502; phycobilisome 120 kDa linker polypeptide, core 1855241 3899905 CYA_1851 Synechococcus sp. JA-3-3Ab phycobilisome 120 kDa linker polypeptide, core YP_475265.1 1852542 R 321327 CDS YP_475266.1 86606503 3899906 1855686..1857611 1 NC_007775.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1857611 3899906 CYA_1852 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475266.1 1855686 D 321327 CDS YP_475267.1 86606504 3899908 complement(1857739..1859988) 1 NC_007775.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; hypothetical protein 1859988 3899908 CYA_1854 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475267.1 1857739 R 321327 CDS YP_475268.1 86606505 3899909 1860049..1860273 1 NC_007775.1 hypothetical protein 1860273 3899909 CYA_1856 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475268.1 1860049 D 321327 CDS YP_475269.1 86606506 3899910 complement(1860270..1861091) 1 NC_007775.1 identified by match to protein family HMM PF01497; metal chelate ABC transporter metal chelate-binding protein 1861091 3899910 CYA_1855 Synechococcus sp. JA-3-3Ab metal chelate ABC transporter metal chelate-binding protein YP_475269.1 1860270 R 321327 CDS YP_475270.1 86606507 3899911 complement(1861251..1862810) 1 NC_007775.1 identified by similarity to GB:AAM71888.1; match to protein family HMM PF01266; match to protein family HMM TIGR02730; carotenoid isomerase 1862810 crtH 3899911 crtH Synechococcus sp. JA-3-3Ab carotenoid isomerase YP_475270.1 1861251 R 321327 CDS YP_475271.1 86606508 3899912 complement(1862898..1863845) 1 NC_007775.1 identified by similarity to SP:P23860; match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease 1863845 potB 3899912 potB Synechococcus sp. JA-3-3Ab spermidine/putrescine ABC transporter permease YP_475271.1 1862898 R 321327 CDS YP_475272.1 86606509 3899913 complement(1863839..1864972) 1 NC_007775.1 identified by similarity to SP:P23858; match to protein family HMM PF00005; spermidine/putrescine ABC transporter ATP-binding protein 1864972 potA 3899913 potA Synechococcus sp. JA-3-3Ab spermidine/putrescine ABC transporter ATP-binding protein YP_475272.1 1863839 R 321327 CDS YP_475273.1 86606510 3899914 complement(1865040..1865843) 1 NC_007775.1 identified by similarity to GB:BAC91582.1; hypothetical protein 1865843 3899914 CYA_1860 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475273.1 1865040 R 321327 CDS YP_475274.1 86606511 3899915 1865824..1865940 1 NC_007775.1 hypothetical protein 1865940 3899915 CYA_1861 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475274.1 1865824 D 321327 CDS YP_475275.1 86606512 3899916 1866057..1866605 1 NC_007775.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1866605 frr 3899916 frr Synechococcus sp. JA-3-3Ab ribosome recycling factor YP_475275.1 1866057 D 321327 CDS YP_475276.1 86606513 3899917 1866701..1869412 1 NC_007775.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF01743; match to protein family HMM PF02272; polyA polymerase family protein 1869412 3899917 CYA_1863 Synechococcus sp. JA-3-3Ab polyA polymerase family protein YP_475276.1 1866701 D 321327 CDS YP_475277.1 86606514 3899918 1869502..1870437 1 NC_007775.1 identified by match to protein family HMM PF01435; M48B family peptidase 1870437 3899918 CYA_1864 Synechococcus sp. JA-3-3Ab M48B family peptidase YP_475277.1 1869502 D 321327 CDS YP_475278.1 86606515 3899920 1871350..1872561 1 NC_007775.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 1872561 aroB 3899920 aroB Synechococcus sp. JA-3-3Ab 3-dehydroquinate synthase YP_475278.1 1871350 D 321327 CDS YP_475279.1 86606516 3899845 1872540..1873547 1 NC_007775.1 identified by similarity to SP:Q04797; match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase 1873547 asd 3899845 asd Synechococcus sp. JA-3-3Ab aspartate-semialdehyde dehydrogenase YP_475279.1 1872540 D 321327 CDS YP_475280.1 86606517 3899846 1873582..1873776 1 NC_007775.1 hypothetical protein 1873776 3899846 CYA_1868 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475280.1 1873582 D 321327 CDS YP_475281.1 86606518 3899847 1874380..1875156 1 NC_007775.1 identified by match to protein family HMM PF02535; zinc/iron ABC transporter permease 1875156 3899847 CYA_1869 Synechococcus sp. JA-3-3Ab zinc/iron ABC transporter permease YP_475281.1 1874380 D 321327 CDS YP_475282.1 86606519 3899848 1875186..1875968 1 NC_007775.1 identified by similarity to SP:Q06174; carboxylesterase 1875968 est 3899848 est Synechococcus sp. JA-3-3Ab carboxylesterase YP_475282.1 1875186 D 321327 CDS YP_475283.1 86606520 3899849 complement(1875934..1876707) 1 NC_007775.1 identified by similarity to GB:BAC89517.1; hypothetical protein 1876707 3899849 CYA_1870 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475283.1 1875934 R 321327 CDS YP_475284.1 86606521 3899850 1876803..1877120 1 NC_007775.1 hypothetical protein 1877120 3899850 CYA_1872 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475284.1 1876803 D 321327 CDS YP_475285.1 86606522 3899851 1877125..1877265 1 NC_007775.1 hypothetical protein 1877265 3899851 CYA_1873 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475285.1 1877125 D 321327 CDS YP_475286.1 86606523 3899853 complement(1878066..1879004) 1 NC_007775.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1879004 murB 3899853 murB Synechococcus sp. JA-3-3Ab UDP-N-acetylenolpyruvoylglucosamine reductase YP_475286.1 1878066 R 321327 CDS YP_475287.1 86606524 3899854 complement(1879001..1880533) 1 NC_007775.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 1880533 murC 3899854 murC Synechococcus sp. JA-3-3Ab UDP-N-acetylmuramate--L-alanine ligase YP_475287.1 1879001 R 321327 CDS YP_475288.1 86606525 3899855 1880798..1881943 1 NC_007775.1 identified by match to protein family HMM PF00529; membrane fusion protein family protein 1881943 3899855 CYA_1877 Synechococcus sp. JA-3-3Ab membrane fusion protein family protein YP_475288.1 1880798 D 321327 CDS YP_475289.1 86606526 3899856 1881953..1883137 1 NC_007775.1 identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185; glycolipid ABC exporter (DevE) family permease 1883137 devC 3899856 devC Synechococcus sp. JA-3-3Ab glycolipid ABC exporter (DevE) family permease YP_475289.1 1881953 D 321327 CDS YP_475290.1 86606527 3899857 1883316..1884053 1 NC_007775.1 identified by similarity to GB:CAA05977.1; match to protein family HMM PF00005; glycolipid ABC exporter (DevE) family ATP-binding protein 1884053 devA 3899857 devA Synechococcus sp. JA-3-3Ab glycolipid ABC exporter (DevE) family ATP-binding protein YP_475290.1 1883316 D 321327 CDS YP_475291.1 86606528 3899858 complement(1884050..1885003) 1 NC_007775.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase family protein 1885003 3899858 CYA_1879 Synechococcus sp. JA-3-3Ab NAD-dependent epimerase/dehydratase family protein YP_475291.1 1884050 R 321327 CDS YP_475292.1 86606529 3899859 complement(1885069..1887720) 1 NC_007775.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1887720 alaS 3899859 alaS Synechococcus sp. JA-3-3Ab alanyl-tRNA synthetase YP_475292.1 1885069 R 321327 CDS YP_475293.1 86606530 3899860 1888007..1889680 1 NC_007775.1 identified by match to protein family HMM PF00069; match to protein family HMM PF00805; serine/threonine protein kinase 1889680 3899860 CYA_1882 Synechococcus sp. JA-3-3Ab serine/threonine protein kinase YP_475293.1 1888007 D 321327 CDS YP_475294.1 86606531 3899861 complement(1889699..1890190) 1 NC_007775.1 hypothetical protein 1890190 3899861 CYA_1883 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475294.1 1889699 R 321327 CDS YP_475295.1 86606532 3899787 1890397..1891458 1 NC_007775.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1891458 hisC 3899787 hisC Synechococcus sp. JA-3-3Ab histidinol-phosphate aminotransferase YP_475295.1 1890397 D 321327 CDS YP_475296.1 86606533 3899788 complement(1891482..1895570) 1 NC_007775.1 hypothetical protein 1895570 3899788 CYA_1886 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475296.1 1891482 R 321327 CDS YP_475297.1 86606534 3899789 complement(1895866..1895994) 1 NC_007775.1 hypothetical protein 1895994 3899789 CYA_1887 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475297.1 1895866 R 321327 CDS YP_475298.1 86606535 3899790 1896114..1896587 1 NC_007775.1 identified by similarity to SP:Q06823; match to protein family HMM PF00011; small heat shock protein (HSP20) family protein 1896587 3899790 CYA_1888 Synechococcus sp. JA-3-3Ab small heat shock protein (HSP20) family protein YP_475298.1 1896114 D 321327 CDS YP_475299.1 86606536 3899791 complement(1896634..1897416) 1 NC_007775.1 identified by similarity to GB:BAC90863.1; match to protein family HMM PF01887; hypothetical protein 1897416 3899791 CYA_1889 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475299.1 1896634 R 321327 CDS YP_475300.1 86606537 3899792 complement(1897469..1898749) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 1898749 3899792 CYA_1890 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_475300.1 1897469 R 321327 CDS YP_475301.1 86606538 3899793 complement(1898604..1899197) 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 1899197 3899793 CYA_1891 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_475301.1 1898604 R 321327 CDS YP_475302.1 86606539 3899794 complement(1899291..1900046) 1 NC_007775.1 identified by similarity to GB:AAD30120.2; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator RpaA 1900046 3899794 CYA_1892 Synechococcus sp. JA-3-3Ab DNA-binding response regulator RpaA YP_475302.1 1899291 R 321327 CDS YP_475303.1 86606540 3899795 complement(1900194..1901972) 1 NC_007775.1 identified by match to protein family HMM PF00005; peptide/nickel/opine uptake ABC transporter ATP-binding protein 1901972 3899795 CYA_1893 Synechococcus sp. JA-3-3Ab peptide/nickel/opine uptake ABC transporter ATP-binding protein YP_475303.1 1900194 R 321327 CDS YP_475304.1 86606541 3899796 complement(1902123..1903463) 1 NC_007775.1 hypothetical protein 1903463 3899796 CYA_1894 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475304.1 1902123 R 321327 CDS YP_475305.1 86606542 3899797 complement(1903557..1905149) 1 NC_007775.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551; M23B family peptidase 1905149 3899797 CYA_1895 Synechococcus sp. JA-3-3Ab M23B family peptidase YP_475305.1 1903557 R 321327 CDS YP_475306.1 86606543 3899798 1905549..1907069 1 NC_007775.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1907069 cysS 3899798 cysS Synechococcus sp. JA-3-3Ab cysteinyl-tRNA synthetase YP_475306.1 1905549 D 321327 CDS YP_475307.1 86606544 3899799 complement(1907093..1908622) 1 NC_007775.1 identified by match to protein family HMM PF00450; S10 family peptidase 1908622 3899799 CYA_1897 Synechococcus sp. JA-3-3Ab S10 family peptidase YP_475307.1 1907093 R 321327 CDS YP_475308.1 86606545 3899800 complement(1908707..1909300) 1 NC_007775.1 identified by similarity to GB:BAC89656.1; hypothetical protein 1909300 3899800 CYA_1898 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475308.1 1908707 R 321327 CDS YP_475309.1 86606546 3899801 complement(1909497..1910519) 1 NC_007775.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 1910519 thiL 3899801 thiL Synechococcus sp. JA-3-3Ab thiamine monophosphate kinase YP_475309.1 1909497 R 321327 CDS YP_475310.1 86606547 3899802 complement(1910603..1912207) 1 NC_007775.1 acts as a promotor non-specific transcription repressor; circadian clock protein KaiC 1912207 kaiC 3899802 kaiC Synechococcus sp. JA-3-3Ab circadian clock protein KaiC YP_475310.1 1910603 R 321327 CDS YP_475311.1 86606548 3899803 complement(1912233..1912535) 1 NC_007775.1 Decreases the phosphorylation of KaiC, a component of the main circadian regulator in cyanobacteria; circadian clock protein KaiB 1912535 kaiB 3899803 kaiB Synechococcus sp. JA-3-3Ab circadian clock protein KaiB YP_475311.1 1912233 R 321327 CDS YP_475312.1 86606549 3899804 complement(1912539..1913453) 1 NC_007775.1 identified by match to protein family HMM PF07688; circadian clock protein KaiA 1913453 kaiA 3899804 kaiA Synechococcus sp. JA-3-3Ab circadian clock protein KaiA YP_475312.1 1912539 R 321327 CDS YP_475313.1 86606550 3899805 1913692..1914624 1 NC_007775.1 identified by match to protein family HMM PF01156; inosine-uridine preferring nucleoside hydrolase family protein 1914624 3899805 CYA_1903 Synechococcus sp. JA-3-3Ab inosine-uridine preferring nucleoside hydrolase family protein YP_475313.1 1913692 D 321327 CDS YP_475314.1 86606551 3899806 1914936..1915523 1 NC_007775.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1915523 pgsA 3899806 pgsA Synechococcus sp. JA-3-3Ab CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_475314.1 1914936 D 321327 CDS YP_475315.1 86606552 3899768 1915477..1916058 1 NC_007775.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1916058 ruvC 3899768 ruvC Synechococcus sp. JA-3-3Ab Holliday junction resolvase YP_475315.1 1915477 D 321327 CDS YP_475316.1 86606553 3899769 1916125..1916772 1 NC_007775.1 identified by match to protein family HMM PF02190; ATP-dependent protease La 1916772 3899769 CYA_1906 Synechococcus sp. JA-3-3Ab ATP-dependent protease La YP_475316.1 1916125 D 321327 CDS YP_475317.1 86606554 3899770 1916902..1917633 1 NC_007775.1 identified by similarity to PIR:AB2626; hypothetical protein 1917633 3899770 CYA_1907 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475317.1 1916902 D 321327 CDS YP_475318.1 86606555 3899771 1917679..1918737 1 NC_007775.1 hypothetical protein 1918737 3899771 CYA_1908 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475318.1 1917679 D 321327 CDS YP_475319.1 86606556 3899772 1918914..1920101 1 NC_007775.1 identified by similarity to PIR:S76763; match to protein family HMM PF04339; hypothetical protein 1920101 3899772 CYA_1909 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475319.1 1918914 D 321327 CDS YP_475320.1 86606557 3899773 complement(1920107..1920781) 1 NC_007775.1 identified by match to protein family HMM PF00072; response regulator 1920781 3899773 CYA_1910 Synechococcus sp. JA-3-3Ab response regulator YP_475320.1 1920107 R 321327 CDS YP_475321.1 86606558 3899774 1920942..1921688 1 NC_007775.1 identified by match to protein family HMM PF01694; S54 family peptidase 1921688 3899774 CYA_1911 Synechococcus sp. JA-3-3Ab S54 family peptidase YP_475321.1 1920942 D 321327 CDS YP_475322.1 86606559 3899775 1921739..1922380 1 NC_007775.1 identified by similarity to GB:AAQ63052.1; match to protein family HMM PF05685; hypothetical protein 1922380 3899775 CYA_1912 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475322.1 1921739 D 321327 CDS YP_475323.1 86606560 3899776 complement(1922540..1923016) 1 NC_007775.1 identified by match to protein family HMM PF01797; ISSoc3, orfA transposase 1923016 3899776 CYA_1913 Synechococcus sp. JA-3-3Ab ISSoc3, orfA transposase YP_475323.1 1922540 R 321327 CDS YP_475324.1 86606561 3899778 complement(1924290..1925897) 1 NC_007775.1 Shuttles electrons from NAD(P)H, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NAD(P)H-quinone oxidoreductase subunit 4 1925897 3899778 CYA_1915 Synechococcus sp. JA-3-3Ab NAD(P)H-quinone oxidoreductase subunit 4 YP_475324.1 1924290 R 321327 CDS YP_475325.1 86606562 3899779 1926267..1927301 1 NC_007775.1 identified by match to protein family HMM PF00962; adenosine deaminase 1927301 3899779 CYA_1916 Synechococcus sp. JA-3-3Ab adenosine deaminase YP_475325.1 1926267 D 321327 CDS YP_475326.1 86606563 3899780 complement(1927378..1928427) 1 NC_007775.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 1928427 ybbB 3899780 ybbB Synechococcus sp. JA-3-3Ab tRNA 2-selenouridine synthase YP_475326.1 1927378 R 321327 CDS YP_475327.1 86606564 3899781 1928619..1929314 1 NC_007775.1 identified by match to protein family HMM PF00857; isochorismatase family protein 1929314 3899781 CYA_1918 Synechococcus sp. JA-3-3Ab isochorismatase family protein YP_475327.1 1928619 D 321327 CDS YP_475328.1 86606565 3899782 1929459..1930910 1 NC_007775.1 identified by match to protein family HMM PF00005; carbohydrate ABC transporter ATP-binding protein 1930910 3899782 CYA_1919 Synechococcus sp. JA-3-3Ab carbohydrate ABC transporter ATP-binding protein YP_475328.1 1929459 D 321327 CDS YP_475329.1 86606566 3899783 complement(1930962..1931726) 1 NC_007775.1 identified by match to protein family HMM PF00005; urea ABC transporter ATP-binding protein 1931726 3899783 CYA_1920 Synechococcus sp. JA-3-3Ab urea ABC transporter ATP-binding protein YP_475329.1 1930962 R 321327 CDS YP_475330.1 86606567 3899784 complement(1931761..1932528) 1 NC_007775.1 identified by similarity to GB:CAB70951.1; match to protein family HMM PF00005; urea ABC transporter ATP-binding protein 1932528 3899784 CYA_1921 Synechococcus sp. JA-3-3Ab urea ABC transporter ATP-binding protein YP_475330.1 1931761 R 321327 CDS YP_475331.1 86606568 3899785 complement(1932699..1933907) 1 NC_007775.1 identified by similarity to GB:CAB70950.1; match to protein family HMM PF02653; urea ABC transporter permease 1933907 3899785 CYA_1922 Synechococcus sp. JA-3-3Ab urea ABC transporter permease YP_475331.1 1932699 R 321327 CDS YP_475332.1 86606569 3899786 complement(1933911..1935068) 1 NC_007775.1 identified by similarity to GB:CAB70949.1; match to protein family HMM PF02653; urea ABC transporter permease 1935068 3899786 CYA_1923 Synechococcus sp. JA-3-3Ab urea ABC transporter permease YP_475332.1 1933911 R 321327 CDS YP_475333.1 86606570 3899710 complement(1935173..1936447) 1 NC_007775.1 identified by similarity to GB:CAB70948.1; match to protein family HMM PF01094; match to protein family HMM TIGR01409; urea ABC transporter urea-binding protein 1936447 3899710 CYA_1924 Synechococcus sp. JA-3-3Ab urea ABC transporter urea-binding protein YP_475333.1 1935173 R 321327 CDS YP_475334.1 86606571 3899711 1936845..1938779 1 NC_007775.1 identified by match to protein family HMM PF00326; S9C family peptidase 1938779 3899711 CYA_1925 Synechococcus sp. JA-3-3Ab S9C family peptidase YP_475334.1 1936845 D 321327 CDS YP_475335.1 86606572 3899712 1938847..1940973 1 NC_007775.1 identified by match to protein family HMM PF01464; match to protein family HMM PF07719; Slt family transglycosylase 1940973 3899712 CYA_1926 Synechococcus sp. JA-3-3Ab Slt family transglycosylase YP_475335.1 1938847 D 321327 CDS YP_475336.1 86606573 3899713 complement(1941213..1941491) 1 NC_007775.1 hypothetical protein 1941491 3899713 CYA_1927 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475336.1 1941213 R 321327 CDS YP_475337.1 86606574 3899714 1941566..1942258 1 NC_007775.1 identified by match to protein family HMM PF00226; DnaJ domain-containing protein 1942258 3899714 CYA_1929 Synechococcus sp. JA-3-3Ab DnaJ domain-containing protein YP_475337.1 1941566 D 321327 CDS YP_475338.1 86606575 3899715 complement(1942255..1943112) 1 NC_007775.1 identified by match to protein family HMM PF01972; S49 family peptidase 1943112 3899715 CYA_1928 Synechococcus sp. JA-3-3Ab S49 family peptidase YP_475338.1 1942255 R 321327 CDS YP_475339.1 86606576 3899716 complement(1943183..1944007) 1 NC_007775.1 hypothetical protein 1944007 3899716 CYA_1930 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475339.1 1943183 R 321327 CDS YP_475340.1 86606577 3899717 complement(1944066..1945040) 1 NC_007775.1 identified by similarity to GB:AAF78203.1; match to protein family HMM PF00487; fatty acid desaturase 1945040 3899717 CYA_1931 Synechococcus sp. JA-3-3Ab fatty acid desaturase YP_475340.1 1944066 R 321327 CDS YP_475341.1 86606578 3899718 1945381..1945626 1 NC_007775.1 photosystem I reaction center protein PsaK 1945626 psaK 3899718 psaK Synechococcus sp. JA-3-3Ab photosystem I reaction center protein PsaK YP_475341.1 1945381 D 321327 CDS YP_475342.1 86606579 3899719 1945752..1945889 1 NC_007775.1 may be involved in binding plastoquinone and maintaining PSII dimers; photosystem II reaction center protein K 1945889 psbK 3899719 psbK Synechococcus sp. JA-3-3Ab photosystem II reaction center protein K YP_475342.1 1945752 D 321327 CDS YP_475343.1 86606580 3899720 complement(1946054..1946593) 1 NC_007775.1 hypothetical protein 1946593 3899720 CYA_1934 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475343.1 1946054 R 321327 CDS YP_475344.1 86606581 3899721 complement(1946705..1947118) 1 NC_007775.1 hypothetical protein 1947118 3899721 CYA_1935 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475344.1 1946705 R 321327 CDS YP_475345.1 86606582 3899722 1947458..1948516 1 NC_007775.1 identified by match to protein family HMM PF01078; match to protein family HMM TIGR02030; magnesium chelatase, ATPase subunit I 1948516 chlI 3899722 chlI Synechococcus sp. JA-3-3Ab magnesium chelatase, ATPase subunit I YP_475345.1 1947458 D 321327 CDS YP_475346.1 86606583 3899723 1948622..1949239 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 1949239 3899723 CYA_1937 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_475346.1 1948622 D 321327 CDS YP_475347.1 86606584 3899724 1949094..1950374 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 1950374 3899724 CYA_1938 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_475347.1 1949094 D 321327 CDS YP_475348.1 86606585 3899725 complement(1950384..1951052) 1 NC_007775.1 hypothetical protein 1951052 3899725 CYA_1939 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475348.1 1950384 R 321327 CDS YP_475349.1 86606586 3899726 complement(1951110..1951634) 1 NC_007775.1 identified by similarity to SP:P43270; match to protein family HMM PF00565; thermonuclease 1951634 3899726 CYA_1940 Synechococcus sp. JA-3-3Ab thermonuclease YP_475349.1 1951110 R 321327 CDS YP_475350.1 86606587 3899727 complement(1951778..1952932) 1 NC_007775.1 identified by similarity to GB:BAC09914.1; match to protein family HMM PF01837; hypothetical protein 1952932 3899727 CYA_1941 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475350.1 1951778 R 321327 CDS YP_475351.1 86606588 3899728 complement(1953067..1953891) 1 NC_007775.1 identified by similarity to SP:P36650; similarity to PIR:E64065; match to protein family HMM PF00149; 3',5'-cyclic-nucleotide phosphodiesterase 1953891 icc 3899728 icc Synechococcus sp. JA-3-3Ab 3',5'-cyclic-nucleotide phosphodiesterase YP_475351.1 1953067 R 321327 CDS YP_475352.1 86606589 3899729 complement(1954079..1954609) 1 NC_007775.1 photosystem II oxygen evolving complex protein PsbP 1954609 psbP 3899729 psbP Synechococcus sp. JA-3-3Ab photosystem II oxygen evolving complex protein PsbP YP_475352.1 1954079 R 321327 CDS YP_475353.1 86606590 3899635 complement(1954758..1957040) 1 NC_007775.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; RelA/SpoT family protein 1957040 3899635 CYA_1944 Synechococcus sp. JA-3-3Ab RelA/SpoT family protein YP_475353.1 1954758 R 321327 CDS YP_475354.1 86606591 3899636 complement(1957239..1958108) 1 NC_007775.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 1958108 rbgA 3899636 rbgA Synechococcus sp. JA-3-3Ab ribosomal biogenesis GTPase YP_475354.1 1957239 R 321327 CDS YP_475355.1 86606592 3899637 1958288..1958773 1 NC_007775.1 identified by match to protein family HMM PF00111; iron-sulfur cluster-binding protein 1958773 3899637 CYA_1946 Synechococcus sp. JA-3-3Ab iron-sulfur cluster-binding protein YP_475355.1 1958288 D 321327 CDS YP_475356.1 86606593 3899638 1958780..1960201 1 NC_007775.1 identified by match to protein family HMM PF00370; carbohydrate kinase 1960201 3899638 CYA_1947 Synechococcus sp. JA-3-3Ab carbohydrate kinase YP_475356.1 1958780 D 321327 CDS YP_475357.1 86606594 3899639 complement(1960584..1962242) 1 NC_007775.1 identified by match to protein family HMM PF03109; hypothetical protein 1962242 3899639 CYA_1948 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475357.1 1960584 R 321327 CDS YP_475358.1 86606595 3899640 complement(1962280..1962861) 1 NC_007775.1 identified by similarity to SP:P23480; match to protein family HMM PF00578; AhpC/TSA family protein 1962861 3899640 CYA_1949 Synechococcus sp. JA-3-3Ab AhpC/TSA family protein YP_475358.1 1962280 R 321327 CDS YP_475359.1 86606596 3899641 complement(1962899..1963336) 1 NC_007775.1 hypothetical protein 1963336 3899641 CYA_1950 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475359.1 1962899 R 321327 CDS YP_475360.1 86606597 3899642 complement(1963340..1963903) 1 NC_007775.1 lipoprotein 1963903 3899642 CYA_1951 Synechococcus sp. JA-3-3Ab lipoprotein YP_475360.1 1963340 R 321327 CDS YP_475361.1 86606598 3899644 complement(1964218..1965027) 1 NC_007775.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050; RNA methyltransferase 1965027 3899644 CYA_1953 Synechococcus sp. JA-3-3Ab RNA methyltransferase YP_475361.1 1964218 R 321327 CDS YP_475362.1 86606599 3899645 1965094..1965669 1 NC_007775.1 lipoprotein 1965669 3899645 CYA_1954 Synechococcus sp. JA-3-3Ab lipoprotein YP_475362.1 1965094 D 321327 CDS YP_475363.1 86606600 3899646 1965676..1966587 1 NC_007775.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1966587 lpxC 3899646 lpxC Synechococcus sp. JA-3-3Ab UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_475363.1 1965676 D 321327 CDS YP_475364.1 86606601 3899647 1966855..1968081 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc5, transposase 1968081 3899647 CYA_1956 Synechococcus sp. JA-3-3Ab ISSoc5, transposase YP_475364.1 1966855 D 321327 CDS YP_475365.1 86606602 3899648 1968161..1968661 1 NC_007775.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1968661 fabZ 3899648 fabZ Synechococcus sp. JA-3-3Ab (3R)-hydroxymyristoyl-ACP dehydratase YP_475365.1 1968161 D 321327 CDS YP_475366.1 86606603 3899649 complement(1968830..1969306) 1 NC_007775.1 identified by match to protein family HMM PF01797; ISSoc3, orfA transposase 1969306 3899649 CYA_1958 Synechococcus sp. JA-3-3Ab ISSoc3, orfA transposase YP_475366.1 1968830 R 321327 CDS YP_475367.1 86606604 3899650 1969262..1970533 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc3, orfB transposase 1970533 3899650 CYA_1959 Synechococcus sp. JA-3-3Ab ISSoc3, orfB transposase YP_475367.1 1969262 D 321327 CDS YP_475368.1 86606605 3899651 1970741..1971652 1 NC_007775.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1971652 lpxA 3899651 lpxA Synechococcus sp. JA-3-3Ab UDP-N-acetylglucosamine acyltransferase YP_475368.1 1970741 D 321327 CDS YP_475369.1 86606606 3899652 1971649..1972839 1 NC_007775.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1972839 lpxB 3899652 lpxB Synechococcus sp. JA-3-3Ab lipid-A-disaccharide synthase YP_475369.1 1971649 D 321327 CDS YP_475370.1 86606607 3899596 complement(1972842..1973888) 1 NC_007775.1 identified by match to protein family HMM PF07755; hypothetical protein 1973888 3899596 CYA_1962 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475370.1 1972842 R 321327 CDS YP_475371.1 86606608 3899597 complement(1973893..1974942) 1 NC_007775.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing enzyme family protein 1974942 3899597 CYA_1963 Synechococcus sp. JA-3-3Ab mandelate racemase/muconate lactonizing enzyme family protein YP_475371.1 1973893 R 321327 CDS YP_475372.1 86606609 3899598 1975121..1976758 1 NC_007775.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 1976758 3899598 CYA_1964 Synechococcus sp. JA-3-3Ab acetolactate synthase YP_475372.1 1975121 D 321327 CDS YP_475373.1 86606610 3899599 1976915..1978981 1 NC_007775.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157; type IV pilus assembly protein PilB 1978981 3899599 CYA_1965 Synechococcus sp. JA-3-3Ab type IV pilus assembly protein PilB YP_475373.1 1976915 D 321327 CDS YP_475374.1 86606611 3899600 1979154..1980284 1 NC_007775.1 identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein 1980284 pilT-1 3899600 pilT-1 Synechococcus sp. JA-3-3Ab twitching motility protein YP_475374.1 1979154 D 321327 CDS YP_475375.1 86606612 3899601 1980445..1981671 1 NC_007775.1 identified by match to protein family HMM PF00482; type IV pilus assembly protein PilC 1981671 pilC 3899601 pilC Synechococcus sp. JA-3-3Ab type IV pilus assembly protein PilC YP_475375.1 1980445 D 321327 CDS YP_475376.1 86606613 3899602 1981723..1986432 1 NC_007775.1 identified by match to protein family HMM PF01835; match to protein family HMM PF07703; alpha-2-macroglobulin family protein 1986432 3899602 CYA_1968 Synechococcus sp. JA-3-3Ab alpha-2-macroglobulin family protein YP_475376.1 1981723 D 321327 CDS YP_475377.1 86606614 3899603 1986510..1988141 1 NC_007775.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 1988141 3899603 CYA_1969 Synechococcus sp. JA-3-3Ab phosphoglucomutase YP_475377.1 1986510 D 321327 CDS YP_475378.1 86606615 3899604 1988278..1989189 1 NC_007775.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 1989189 3899604 CYA_1971 Synechococcus sp. JA-3-3Ab alpha/beta fold family hydrolase YP_475378.1 1988278 D 321327 CDS YP_475379.1 86606616 3899605 complement(1989186..1989647) 1 NC_007775.1 hypothetical protein 1989647 3899605 CYA_1970 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475379.1 1989186 R 321327 CDS YP_475380.1 86606617 3899607 complement(1989936..1992536) 1 NC_007775.1 identified by match to protein family HMM PF03065; glycosyl hydrolase family protein 1992536 3899607 CYA_1973 Synechococcus sp. JA-3-3Ab glycosyl hydrolase family protein YP_475380.1 1989936 R 321327 CDS YP_475381.1 86606618 3899608 complement(1992867..1993736) 1 NC_007775.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1993736 folD 3899608 folD Synechococcus sp. JA-3-3Ab bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_475381.1 1992867 R 321327 CDS YP_475382.1 86606619 3899609 complement(1993838..1994074) 1 NC_007775.1 identified by similarity to SP:P22938; exodeoxyribonuclease VII small subunit 1994074 xseB 3899609 xseB Synechococcus sp. JA-3-3Ab exodeoxyribonuclease VII small subunit YP_475382.1 1993838 R 321327 CDS YP_475383.1 86606620 3899610 complement(1994055..1995290) 1 NC_007775.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1995290 xseA 3899610 xseA Synechococcus sp. JA-3-3Ab exodeoxyribonuclease VII large subunit YP_475383.1 1994055 R 321327 CDS YP_475384.1 86606621 3899611 1995330..1996559 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc7, transposase 1996559 3899611 CYA_1977 Synechococcus sp. JA-3-3Ab ISSoc7, transposase YP_475384.1 1995330 D 321327 CDS YP_475385.1 86606622 3899612 1996733..1997869 1 NC_007775.1 identified by match to protein family HMM PF01594; hypothetical protein 1997869 3899612 CYA_1978 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475385.1 1996733 D 321327 CDS YP_475386.1 86606623 3899613 1997989..1998363 1 NC_007775.1 identified by similarity to GB:BAC91746.1; match to protein family HMM PF06868; hypothetical protein 1998363 3899613 CYA_1979 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475386.1 1997989 D 321327 CDS YP_475387.1 86606624 3899614 1998386..1999501 1 NC_007775.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 1999501 3899614 CYA_1980 Synechococcus sp. JA-3-3Ab pentapeptide repeat-containing protein YP_475387.1 1998386 D 321327 CDS YP_475388.1 86606625 3899558 1999601..2001976 1 NC_007775.1 identified by match to protein family HMM PF03894; phosphoketolase 2001976 3899558 CYA_1981 Synechococcus sp. JA-3-3Ab phosphoketolase YP_475388.1 1999601 D 321327 CDS YP_475389.1 86606626 3899559 2002148..2003170 1 NC_007775.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 2003170 mraY 3899559 mraY Synechococcus sp. JA-3-3Ab phospho-N-acetylmuramoyl-pentapeptide- transferase YP_475389.1 2002148 D 321327 CDS YP_475390.1 86606627 3899561 complement(2003653..2004384) 1 NC_007775.1 identified by similarity to PIR:AH2164; hypothetical protein 2004384 3899561 CYA_1984 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475390.1 2003653 R 321327 CDS YP_475391.1 86606628 3899562 complement(2004448..2005065) 1 NC_007775.1 identified by similarity to SP:Q51521; pyridoxamine 5'-phosphate oxidase family protein 2005065 3899562 CYA_1985 Synechococcus sp. JA-3-3Ab pyridoxamine 5'-phosphate oxidase family protein YP_475391.1 2004448 R 321327 CDS YP_475392.1 86606629 3899563 complement(2005093..2006355) 1 NC_007775.1 identified by match to protein family HMM PF00583; acetyltransferase 2006355 3899563 CYA_1986 Synechococcus sp. JA-3-3Ab acetyltransferase YP_475392.1 2005093 R 321327 CDS YP_475393.1 86606630 3899564 complement(2006475..2007128) 1 NC_007775.1 identified by similarity to PIR:AC2428; hypothetical protein 2007128 3899564 CYA_1987 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475393.1 2006475 R 321327 CDS YP_475394.1 86606631 3899565 2007472..2008917 1 NC_007775.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2008917 murA 3899565 murA Synechococcus sp. JA-3-3Ab UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_475394.1 2007472 D 321327 CDS YP_475395.1 86606632 3899566 2009039..2010169 1 NC_007775.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR02032; geranylgeranyl reductase 2010169 3899566 CYA_1990 Synechococcus sp. JA-3-3Ab geranylgeranyl reductase YP_475395.1 2009039 D 321327 CDS YP_475396.1 86606633 3899567 complement(2010166..2010651) 1 NC_007775.1 identified by match to protein family HMM PF02518; sensor histidine kinase 2010651 3899567 CYA_1989 Synechococcus sp. JA-3-3Ab sensor histidine kinase YP_475396.1 2010166 R 321327 CDS YP_475397.1 86606634 3899568 complement(2010771..2011592) 1 NC_007775.1 identified by match to protein family HMM PF00691; OmpA family protein 2011592 3899568 CYA_1991 Synechococcus sp. JA-3-3Ab OmpA family protein YP_475397.1 2010771 R 321327 CDS YP_475398.1 86606635 3899569 complement(2011735..2012391) 1 NC_007775.1 identified by match to protein family HMM PF00717; S24 family peptidase 2012391 3899569 CYA_1992 Synechococcus sp. JA-3-3Ab S24 family peptidase YP_475398.1 2011735 R 321327 CDS YP_475399.1 86606636 3899570 2012542..2012814 1 NC_007775.1 hypothetical protein 2012814 3899570 CYA_1993 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475399.1 2012542 D 321327 CDS YP_475400.1 86606637 3899571 2012908..2013270 1 NC_007775.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 2013270 3899571 CYA_1994 Synechococcus sp. JA-3-3Ab NADH dehydrogenase subunit A YP_475400.1 2012908 D 321327 CDS YP_475401.1 86606638 3899572 2013267..2014001 1 NC_007775.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 2014001 3899572 CYA_1995 Synechococcus sp. JA-3-3Ab NADH dehydrogenase subunit B YP_475401.1 2013267 D 321327 CDS YP_475402.1 86606639 3899573 2014003..2014548 1 NC_007775.1 catalyzes the transfer of electrons from NADH to quinones; NADH dehydrogenase subunit J 2014548 3899573 CYA_1996 Synechococcus sp. JA-3-3Ab NADH dehydrogenase subunit J YP_475402.1 2014003 D 321327 CDS YP_475403.1 86606640 3899574 2014596..2014769 1 NC_007775.1 hypothetical protein 2014769 3899574 CYA_1997 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475403.1 2014596 D 321327 CDS YP_475404.1 86606641 3899575 2014781..2016007 1 NC_007775.1 identified by similarity to PIR:AF2225; match to protein family HMM PF02636; hypothetical protein 2016007 3899575 CYA_1998 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475404.1 2014781 D 321327 CDS YP_475405.1 86606642 3899576 2015755..2016264 1 NC_007775.1 hypothetical protein 2016264 3899576 CYA_1999 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475405.1 2015755 D 321327 CDS YP_475406.1 86606643 3899503 complement(2016332..2017822) 1 NC_007775.1 hypothetical protein 2017822 3899503 CYA_2000 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475406.1 2016332 R 321327 CDS YP_475407.1 86606644 3899504 complement(2017853..2019133) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 2019133 3899504 CYA_2001 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_475407.1 2017853 R 321327 CDS YP_475408.1 86606645 3899505 complement(2018988..2019605) 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 2019605 3899505 CYA_2002 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_475408.1 2018988 R 321327 CDS YP_475409.1 86606646 3899506 complement(2019791..2021053) 1 NC_007775.1 hypothetical protein 2021053 3899506 CYA_2003 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475409.1 2019791 R 321327 CDS YP_475410.1 86606647 3899507 2021157..2021975 1 NC_007775.1 identified by similarity to GB:BAC09915.1; hypothetical protein 2021975 3899507 CYA_2004 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475410.1 2021157 D 321327 CDS YP_475411.1 86606648 3899508 2022286..2023263 1 NC_007775.1 identified by match to protein family HMM PF00565; nuclease domain-containing protein 2023263 3899508 CYA_2005 Synechococcus sp. JA-3-3Ab nuclease domain-containing protein YP_475411.1 2022286 D 321327 CDS YP_475412.1 86606649 3899509 2023324..2024142 1 NC_007775.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; hypothetical protein 2024142 3899509 CYA_2006 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475412.1 2023324 D 321327 CDS YP_475413.1 86606650 3899510 2024321..2024443 1 NC_007775.1 hypothetical protein 2024443 3899510 CYA_2007 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475413.1 2024321 D 321327 CDS YP_475414.1 86606651 3899511 2024694..2025113 1 NC_007775.1 hypothetical protein 2025113 3899511 CYA_2008 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475414.1 2024694 D 321327 CDS YP_475415.1 86606652 3899512 complement(2025296..2026390) 1 NC_007775.1 identified by match to protein family HMM PF03819; match to protein family HMM TIGR00444; MazG family protein 2026390 3899512 CYA_2009 Synechococcus sp. JA-3-3Ab MazG family protein YP_475415.1 2025296 R 321327 CDS YP_475416.1 86606653 3899513 2026943..2027347 1 NC_007775.1 identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfA 2027347 3899513 CYA_2010 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfA YP_475416.1 2026943 D 321327 CDS YP_475417.1 86606654 3899515 2027934..2028476 1 NC_007775.1 identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766; transposase, truncation 2028476 3899515 CYA_2012 Synechococcus sp. JA-3-3Ab transposase, truncation YP_475417.1 2027934 D 321327 CDS YP_475418.1 86606655 3899516 complement(2028491..2030812) 1 NC_007775.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 2030812 recG 3899516 recG Synechococcus sp. JA-3-3Ab ATP-dependent DNA helicase RecG YP_475418.1 2028491 R 321327 CDS YP_475419.1 86606656 3899517 complement(2031074..2031172) 1 NC_007775.1 identified by similarity to SP:P25903; match to protein family HMM PF07465; photosystem I reaction center subunit XII 2031172 psaM 3899517 psaM Synechococcus sp. JA-3-3Ab photosystem I reaction center subunit XII YP_475419.1 2031074 R 321327 CDS YP_475420.1 86606657 3899518 2031422..2032726 1 NC_007775.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 2032726 glyA 3899518 glyA Synechococcus sp. JA-3-3Ab serine hydroxymethyltransferase YP_475420.1 2031422 D 321327 CDS YP_475421.1 86606658 3899519 2032760..2033854 1 NC_007775.1 identified by match to protein family HMM PF00953; glycoside hydrolase family protein 2033854 3899519 CYA_2016 Synechococcus sp. JA-3-3Ab glycoside hydrolase family protein YP_475421.1 2032760 D 321327 CDS YP_475422.1 86606659 3899520 2033862..2034485 1 NC_007775.1 hypothetical protein 2034485 3899520 CYA_2017 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475422.1 2033862 D 321327 CDS YP_475423.1 86606660 3899521 complement(2034498..2035025) 1 NC_007775.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 2035025 apt 3899521 apt Synechococcus sp. JA-3-3Ab adenine phosphoribosyltransferase YP_475423.1 2034498 R 321327 CDS YP_475424.1 86606661 3899387 2035204..2035641 1 NC_007775.1 hypothetical protein 2035641 3899387 CYA_2019 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475424.1 2035204 D 321327 CDS YP_475425.1 86606662 3899388 complement(2035763..2037637) 1 NC_007775.1 M3B family peptidase 2037637 3899388 CYA_2020 Synechococcus sp. JA-3-3Ab M3B family peptidase YP_475425.1 2035763 R 321327 CDS YP_475426.1 86606663 3899389 2037846..2039396 1 NC_007775.1 identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368; Mg chelatase-like protein 2039396 3899389 CYA_2021 Synechococcus sp. JA-3-3Ab Mg chelatase-like protein YP_475426.1 2037846 D 321327 CDS YP_475427.1 86606664 3899390 complement(2039458..2040600) 1 NC_007775.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 2040600 recF 3899390 recF Synechococcus sp. JA-3-3Ab recombination protein F YP_475427.1 2039458 R 321327 CDS YP_475428.1 86606665 3899391 complement(2040704..2041396) 1 NC_007775.1 helix-turn-helix domain-containing protein 2041396 3899391 CYA_2023 Synechococcus sp. JA-3-3Ab helix-turn-helix domain-containing protein YP_475428.1 2040704 R 321327 CDS YP_475429.1 86606666 3899394 complement(2042952..2043209) 1 NC_007775.1 hypothetical protein 2043209 3899394 CYA_2026 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475429.1 2042952 R 321327 CDS YP_475430.1 86606667 3899395 complement(2043231..2043920) 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2043920 3899395 CYA_2027 Synechococcus sp. JA-3-3Ab DNA-binding response regulator YP_475430.1 2043231 R 321327 CDS YP_475431.1 86606668 3899396 2043999..2044391 1 NC_007775.1 hypothetical protein 2044391 3899396 CYA_2028 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475431.1 2043999 D 321327 CDS YP_475432.1 86606669 3899397 complement(2044446..2045318) 1 NC_007775.1 identified by match to protein family HMM PF01497; iron chelate ABC transporter substrate-binding protein 2045318 3899397 CYA_2029 Synechococcus sp. JA-3-3Ab iron chelate ABC transporter substrate-binding protein YP_475432.1 2044446 R 321327 CDS YP_475433.1 86606670 3899398 complement(2045348..2046667) 1 NC_007775.1 identified by similarity to GB:AAF04082.1; match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB family protein 2046667 3899398 CYA_2030 Synechococcus sp. JA-3-3Ab TonB family protein YP_475433.1 2045348 R 321327 CDS YP_475434.1 86606671 3899399 complement(2046708..2049128) 1 NC_007775.1 identified by similarity to GB:AAC27029.1; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01785; match to protein family HMM TIGR01786; TonB-dependent heme/hemoglobin receptor family protein 2049128 3899399 CYA_2031 Synechococcus sp. JA-3-3Ab TonB-dependent heme/hemoglobin receptor family protein YP_475434.1 2046708 R 321327 CDS YP_475435.1 86606672 3899400 complement(2049166..2050011) 1 NC_007775.1 identified by similarity to SP:P15031; match to protein family HMM PF00005; iron chelate ABC transporter ATP-binding protein 2050011 3899400 CYA_2032 Synechococcus sp. JA-3-3Ab iron chelate ABC transporter ATP-binding protein YP_475435.1 2049166 R 321327 CDS YP_475436.1 86606673 3899401 complement(2050008..2051051) 1 NC_007775.1 identified by similarity to SP:P15029; match to protein family HMM PF01032; iron chelate ABC transporter permease 2051051 3899401 CYA_2033 Synechococcus sp. JA-3-3Ab iron chelate ABC transporter permease YP_475436.1 2050008 R 321327 CDS YP_475437.1 86606674 3899402 complement(2051443..2052723) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; transposase 2052723 3899402 CYA_2034 Synechococcus sp. JA-3-3Ab transposase YP_475437.1 2051443 R 321327 CDS YP_475438.1 86606675 3899403 2052972..2055620 1 NC_007775.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 2055620 mutS 3899403 mutS Synechococcus sp. JA-3-3Ab DNA mismatch repair protein MutS YP_475438.1 2052972 D 321327 CDS YP_475439.1 86606676 3899404 complement(2055623..2056153) 1 NC_007775.1 identified by similarity to GB:BAC91704.1; hypothetical protein 2056153 3899404 CYA_2036 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475439.1 2055623 R 321327 CDS YP_475440.1 86606677 3899405 2056745..2057839 1 NC_007775.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; the proteins in this cluster is involved expression of genes important stationary phase, nitrogen promoter recognition, and light/dark adaption; RNA polymerase sigma factor SigC 2057839 3899405 CYA_2037 Synechococcus sp. JA-3-3Ab RNA polymerase sigma factor SigC YP_475440.1 2056745 D 321327 CDS YP_475441.1 86606678 3899406 complement(2057850..2059484) 1 NC_007775.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 2059484 mviN 3899406 mviN Synechococcus sp. JA-3-3Ab integral membrane protein MviN YP_475441.1 2057850 R 321327 CDS YP_475442.1 86606679 3899296 complement(2059650..2060015) 1 NC_007775.1 hypothetical protein 2060015 3899296 CYA_2039 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475442.1 2059650 R 321327 CDS YP_475443.1 86606680 3899297 complement(2060229..2061056) 1 NC_007775.1 identified by match to protein family HMM PF03130; phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit 2061056 cpcE-2 3899297 cpcE-2 Synechococcus sp. JA-3-3Ab phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit YP_475443.1 2060229 R 321327 CDS YP_475444.1 86606681 3899298 complement(2061089..2061946) 1 NC_007775.1 identified by similarity to SP:P11398; match to protein family HMM PF00427; match to protein family HMM PF01383; phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod 2061946 cpcC 3899298 cpcC Synechococcus sp. JA-3-3Ab phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod YP_475444.1 2061089 R 321327 CDS YP_475445.1 86606682 3899299 complement(2062221..2062703) 1 NC_007775.1 identified by similarity to SP:P07121; match to protein family HMM PF00502; match to protein family HMM TIGR01338; phycocyanin subunit alpha 2062703 cpcA-2 3899299 cpcA-2 Synechococcus sp. JA-3-3Ab phycocyanin subunit alpha YP_475445.1 2062221 R 321327 CDS YP_475446.1 86606683 3899300 complement(2062891..2063409) 1 NC_007775.1 identified by similarity to SP:P07120; match to protein family HMM PF00502; phycocyanin subunit beta 2063409 cpcB-2 3899300 cpcB-2 Synechococcus sp. JA-3-3Ab phycocyanin subunit beta YP_475446.1 2062891 R 321327 CDS YP_475447.1 86606684 3899301 2064145..2064744 1 NC_007775.1 identified by similarity to GB:AAK11648.1; match to protein family HMM PF06206; CpeT protein 2064744 cpeT 3899301 cpeT Synechococcus sp. JA-3-3Ab CpeT protein YP_475447.1 2064145 D 321327 CDS YP_475448.1 86606685 3899302 2064896..2065897 1 NC_007775.1 identified by match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468; phenylalanyl-tRNA synthetase subunit alpha 2065897 pheS 3899302 pheS Synechococcus sp. JA-3-3Ab phenylalanyl-tRNA synthetase subunit alpha YP_475448.1 2064896 D 321327 CDS YP_475449.1 86606686 3899303 complement(2065899..2066192) 1 NC_007775.1 identified by similarity to PIR:AD1867; hypothetical protein 2066192 3899303 CYA_2046 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475449.1 2065899 R 321327 CDS YP_475450.1 86606687 3899304 complement(2066390..2066974) 1 NC_007775.1 hypothetical protein 2066974 3899304 CYA_2047 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475450.1 2066390 R 321327 CDS YP_475451.1 86606688 3899305 complement(2067062..2067805) 1 NC_007775.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2067805 3899305 CYA_2048 Synechococcus sp. JA-3-3Ab ABC transporter ATP-binding protein YP_475451.1 2067062 R 321327 CDS YP_475452.1 86606689 3899306 complement(2067865..2069631) 1 NC_007775.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 2069631 3899306 CYA_2049 Synechococcus sp. JA-3-3Ab metallo-beta-lactamase family protein YP_475452.1 2067865 R 321327 CDS YP_475453.1 86606690 3899307 complement(2069890..2071383) 1 NC_007775.1 cellulose synthase, catalytic subunit-like protein 2071383 3899307 CYA_2050 Synechococcus sp. JA-3-3Ab cellulose synthase, catalytic subunit-like protein YP_475453.1 2069890 R 321327 CDS YP_475454.1 86606691 3899308 complement(2071510..2071779) 1 NC_007775.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 2071779 rpmA 3899308 rpmA Synechococcus sp. JA-3-3Ab 50S ribosomal protein L27 YP_475454.1 2071510 R 321327 CDS YP_475455.1 86606692 3899309 complement(2071840..2072247) 1 NC_007775.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 2072247 rplU 3899309 rplU Synechococcus sp. JA-3-3Ab 50S ribosomal protein L21 YP_475455.1 2071840 R 321327 CDS YP_475456.1 86606693 3899310 complement(2072405..2073154) 1 NC_007775.1 hypothetical protein 2073154 3899310 CYA_2053 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475456.1 2072405 R 321327 CDS YP_475457.1 86606694 3899311 complement(2073207..2073488) 1 NC_007775.1 hypothetical protein 2073488 3899311 CYA_2054 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475457.1 2073207 R 321327 CDS YP_475458.1 86606695 3899312 complement(2073485..2074417) 1 NC_007775.1 identified by match to protein family HMM PF00226; match to protein family HMM PF01556; DnaJ family protein 2074417 3899312 CYA_2055 Synechococcus sp. JA-3-3Ab DnaJ family protein YP_475458.1 2073485 R 321327 CDS YP_475459.1 86606696 3899313 complement(2074539..2075300) 1 NC_007775.1 identified by similarity to GB:BAC09967.1; hypothetical protein 2075300 3899313 CYA_2056 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475459.1 2074539 R 321327 CDS YP_475460.1 86606697 3899314 complement(2075577..2076425) 1 NC_007775.1 identified by match to protein family HMM PF04389; M28A family peptidase 2076425 3899314 CYA_2057 Synechococcus sp. JA-3-3Ab M28A family peptidase YP_475460.1 2075577 R 321327 CDS YP_475461.1 86606698 3899241 complement(2076422..2077198) 1 NC_007775.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD family hydrolase 2077198 3899241 CYA_2058 Synechococcus sp. JA-3-3Ab HAD family hydrolase YP_475461.1 2076422 R 321327 CDS YP_475462.1 86606699 3899242 2077343..2078725 1 NC_007775.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 2078725 lpdA 3899242 lpdA Synechococcus sp. JA-3-3Ab dihydrolipoamide dehydrogenase YP_475462.1 2077343 D 321327 CDS YP_475463.1 86606700 3899243 2078861..2080132 1 NC_007775.1 hypothetical protein 2080132 3899243 CYA_2060 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475463.1 2078861 D 321327 CDS YP_475464.1 86606701 3899244 complement(2080171..2081562) 1 NC_007775.1 Member of MEROPS family U62, which contains contains microcin-processing peptidases of unknown catalytic mechanism.; identified by similarity to SP:P46473; match to protein family HMM PF01523; peptidase TldD 2081562 3899244 CYA_2061 Synechococcus sp. JA-3-3Ab peptidase TldD YP_475464.1 2080171 R 321327 CDS YP_475465.1 86606702 3899245 complement(2081587..2083899) 1 NC_007775.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 2083899 glgB 3899245 glgB Synechococcus sp. JA-3-3Ab glycogen branching protein YP_475465.1 2081587 R 321327 CDS YP_475466.1 86606703 3899246 complement(2083980..2085251) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc3, orfB transposase 2085251 3899246 CYA_2063 Synechococcus sp. JA-3-3Ab ISSoc3, orfB transposase YP_475466.1 2083980 R 321327 CDS YP_475467.1 86606704 3899247 2085207..2085683 1 NC_007775.1 identified by match to protein family HMM PF01797; ISSoc3, orfA transposase 2085683 3899247 CYA_2064 Synechococcus sp. JA-3-3Ab ISSoc3, orfA transposase YP_475467.1 2085207 D 321327 CDS YP_475468.1 86606705 3899248 2085907..2086185 1 NC_007775.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; Sec-independent protein translocase protein TatA 2086185 tatA-2 3899248 tatA-2 Synechococcus sp. JA-3-3Ab Sec-independent protein translocase protein TatA YP_475468.1 2085907 D 321327 CDS YP_475469.1 86606706 3899249 2086424..2087257 1 NC_007775.1 identified by match to protein family HMM PF04542; RNA polymerase sigma-70 domain-containing protein 2087257 3899249 CYA_2066 Synechococcus sp. JA-3-3Ab RNA polymerase sigma-70 domain-containing protein YP_475469.1 2086424 D 321327 CDS YP_475470.1 86606707 3899250 2087286..2088311 1 NC_007775.1 identified by match to protein family HMM PF05249; hypothetical protein 2088311 3899250 CYA_2067 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475470.1 2087286 D 321327 CDS YP_475471.1 86606708 3899251 2088432..2088539 1 NC_007775.1 hypothetical protein 2088539 3899251 CYA_2068 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475471.1 2088432 D 321327 CDS YP_475472.1 86606709 3899252 2088582..2088947 1 NC_007775.1 identified by similarity to PIR:S76173; hypothetical protein 2088947 3899252 CYA_2069 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475472.1 2088582 D 321327 CDS YP_475473.1 86606710 3899253 2089022..2089474 1 NC_007775.1 identified by similarity to GB:BAC08024.1; hypothetical protein 2089474 3899253 CYA_2070 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475473.1 2089022 D 321327 CDS YP_475474.1 86606711 3899254 2089672..2091147 1 NC_007775.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 2091147 glgA 3899254 glgA Synechococcus sp. JA-3-3Ab glycogen synthase YP_475474.1 2089672 D 321327 CDS YP_475475.1 86606712 3899255 2091300..2092907 1 NC_007775.1 identified by match to protein family HMM PF03065; glycosyl hydrolase family protein 2092907 3899255 CYA_2072 Synechococcus sp. JA-3-3Ab glycosyl hydrolase family protein YP_475475.1 2091300 D 321327 CDS YP_475476.1 86606713 3899256 complement(2093190..2094986) 1 NC_007775.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit 2094986 ilvB 3899256 ilvB Synechococcus sp. JA-3-3Ab acetolactate synthase 3 catalytic subunit YP_475476.1 2093190 R 321327 CDS YP_475477.1 86606714 3899257 2095217..2095312 1 NC_007775.1 hypothetical protein 2095312 3899257 CYA_2074 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475477.1 2095217 D 321327 CDS YP_475478.1 86606715 3899258 2095412..2095531 1 NC_007775.1 hypothetical protein 2095531 3899258 CYA_2075 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475478.1 2095412 D 321327 CDS YP_475479.1 86606716 3899259 complement(2095714..2096265) 1 NC_007775.1 hypothetical protein 2096265 3899259 CYA_2076 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475479.1 2095714 R 321327 CDS YP_475480.1 86606717 3899260 complement(2096252..2096671) 1 NC_007775.1 hypothetical protein 2096671 3899260 CYA_2077 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475480.1 2096252 R 321327 CDS YP_475481.1 86606718 3899222 complement(2096672..2098180) 1 NC_007775.1 hypothetical protein 2098180 3899222 CYA_2078 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475481.1 2096672 R 321327 CDS YP_475482.1 86606719 3899223 2098221..2100545 1 NC_007775.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720; hypothetical protein 2100545 3899223 CYA_2079 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475482.1 2098221 D 321327 CDS YP_475483.1 86606720 3899224 complement(2100756..2101133) 1 NC_007775.1 hypothetical protein 2101133 3899224 CYA_2080 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475483.1 2100756 R 321327 CDS YP_475484.1 86606721 3899225 complement(2101216..2101767) 1 NC_007775.1 identified by similarity to GB:AAC97587.1; ISSoc4, transposase orfB 2101767 3899225 CYA_2081 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfB YP_475484.1 2101216 R 321327 CDS YP_475485.1 86606722 3899226 complement(2101749..2102147) 1 NC_007775.1 identified by similarity to PIR:AD2038; ISSoc4, transposase orfA 2102147 3899226 CYA_2082 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfA YP_475485.1 2101749 R 321327 CDS YP_475486.1 86606723 3899227 complement(2102434..2102694) 1 NC_007775.1 sulfate permease 2102694 3899227 CYA_2083 Synechococcus sp. JA-3-3Ab sulfate permease YP_475486.1 2102434 R 321327 CDS YP_475487.1 86606724 3899228 2102943..2103374 1 NC_007775.1 hypothetical protein 2103374 3899228 CYA_2084 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475487.1 2102943 D 321327 CDS YP_475488.1 86606725 3899229 2103444..2104289 1 NC_007775.1 identified by similarity to GB:BAC90914.1; hypothetical protein 2104289 3899229 CYA_2085 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475488.1 2103444 D 321327 CDS YP_475489.1 86606726 3899230 2104399..2105160 1 NC_007775.1 identified by similarity to GB:BAC07807.1; hypothetical protein 2105160 3899230 CYA_2086 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475489.1 2104399 D 321327 CDS YP_475490.1 86606727 3899231 2105167..2105934 1 NC_007775.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; hypothetical protein 2105934 3899231 CYA_2087 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475490.1 2105167 D 321327 CDS YP_475491.1 86606728 3899232 complement(2105977..2107104) 1 NC_007775.1 identified by match to protein family HMM PF00160; cyclophilin type peptidyl-prolyl cis-trans isomerase 2107104 3899232 CYA_2088 Synechococcus sp. JA-3-3Ab cyclophilin type peptidyl-prolyl cis-trans isomerase YP_475491.1 2105977 R 321327 CDS YP_475492.1 86606729 3899233 complement(2107234..2107683) 1 NC_007775.1 collagen alpha 1(III) chain 2107683 3899233 CYA_2089 Synechococcus sp. JA-3-3Ab collagen alpha 1(III) chain YP_475492.1 2107234 R 321327 CDS YP_475493.1 86606730 3899234 2107752..2107850 1 NC_007775.1 hypothetical protein 2107850 3899234 CYA_2090 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475493.1 2107752 D 321327 CDS YP_475494.1 86606731 3899235 complement(2108029..2109066) 1 NC_007775.1 hypothetical protein 2109066 3899235 CYA_2091 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475494.1 2108029 R 321327 CDS YP_475495.1 86606732 3899236 complement(2108667..2108861) 1 NC_007775.1 hypothetical protein 2108861 3899236 CYA_2092 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475495.1 2108667 R 321327 CDS YP_475496.1 86606733 3899237 complement(2109020..2110315) 1 NC_007775.1 hypothetical protein 2110315 3899237 CYA_2093 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475496.1 2109020 R 321327 CDS YP_475497.1 86606734 3899238 2110346..2110480 1 NC_007775.1 hypothetical protein 2110480 3899238 CYA_2094 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475497.1 2110346 D 321327 CDS YP_475498.1 86606735 3899239 2110496..2111197 1 NC_007775.1 hypothetical protein 2111197 3899239 CYA_2095 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475498.1 2110496 D 321327 CDS YP_475499.1 86606736 3899240 complement(2111265..2112518) 1 NC_007775.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 2112518 tyrS 3899240 tyrS Synechococcus sp. JA-3-3Ab tyrosyl-tRNA synthetase YP_475499.1 2111265 R 321327 CDS YP_475500.1 86606737 3899144 complement(2112928..2113326) 1 NC_007775.1 stabilizes and protects the oxygen-evolving complex of photosystem II against heat-induced inactivation; photosystem II complex extrinsic protein U 2113326 psbU 3899144 psbU Synechococcus sp. JA-3-3Ab photosystem II complex extrinsic protein U YP_475500.1 2112928 R 321327 CDS YP_475501.1 86606738 3899145 2113505..2116435 1 NC_007775.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 2116435 gcvP 3899145 gcvP Synechococcus sp. JA-3-3Ab glycine dehydrogenase YP_475501.1 2113505 D 321327 CDS YP_475502.1 86606739 3899146 complement(2116444..2117259) 1 NC_007775.1 hypothetical protein 2117259 3899146 CYA_2099 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475502.1 2116444 R 321327 CDS YP_475503.1 86606740 3899147 complement(2117544..2118944) 1 NC_007775.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 2118944 3899147 CYA_2100 Synechococcus sp. JA-3-3Ab amidase YP_475503.1 2117544 R 321327 CDS YP_475504.1 86606741 3899148 complement(2118941..2119129) 1 NC_007775.1 identified by similarity to PIR:AF1933; hypothetical protein 2119129 3899148 CYA_2101 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475504.1 2118941 R 321327 CDS YP_475505.1 86606742 3899149 complement(2119223..2119831) 1 NC_007775.1 hypothetical protein 2119831 3899149 CYA_2102 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475505.1 2119223 R 321327 CDS YP_475506.1 86606743 3899150 complement(2119978..2120823) 1 NC_007775.1 identified by similarity to PIR:AH2295; match to protein family HMM PF05430; hypothetical protein 2120823 3899150 CYA_2103 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475506.1 2119978 R 321327 CDS YP_475507.1 86606744 3899151 2120988..2121932 1 NC_007775.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 2121932 accD 3899151 accD Synechococcus sp. JA-3-3Ab acetyl-CoA carboxylase subunit beta YP_475507.1 2120988 D 321327 CDS YP_475508.1 86606745 3899152 2122212..2122586 1 NC_007775.1 identified by similarity to SP:Q9WVX8; match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-anti-sigma factor 2122586 3899152 CYA_2105 Synechococcus sp. JA-3-3Ab anti-anti-sigma factor YP_475508.1 2122212 D 321327 CDS YP_475509.1 86606746 3899153 2122669..2123367 1 NC_007775.1 hypothetical protein 2123367 3899153 CYA_2107 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475509.1 2122669 D 321327 CDS YP_475510.1 86606747 3899154 complement(2123364..2125556) 1 NC_007775.1 identified by match to protein family HMM PF02254; TrkA domain-containing protein 2125556 3899154 CYA_2106 Synechococcus sp. JA-3-3Ab TrkA domain-containing protein YP_475510.1 2123364 R 321327 CDS YP_475511.1 86606748 3899155 complement(2125625..2125777) 1 NC_007775.1 hypothetical protein 2125777 3899155 CYA_2108 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475511.1 2125625 R 321327 CDS YP_475512.1 86606749 3899156 2125969..2127015 1 NC_007775.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409; iron ABC transporter substrate-binding protein 2127015 3899156 CYA_2109 Synechococcus sp. JA-3-3Ab iron ABC transporter substrate-binding protein YP_475512.1 2125969 D 321327 CDS YP_475513.1 86606750 3899157 2127006..2127473 1 NC_007775.1 hypothetical protein 2127473 3899157 CYA_2110 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475513.1 2127006 D 321327 CDS YP_475514.1 86606751 3899158 2127641..2129362 1 NC_007775.1 identified by match to protein family HMM PF00528; iron ABC transporter permease 2129362 3899158 CYA_2111 Synechococcus sp. JA-3-3Ab iron ABC transporter permease YP_475514.1 2127641 D 321327 CDS YP_475515.1 86606752 3899159 complement(2129478..2130422) 1 NC_007775.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 2130422 atpG 3899159 atpG Synechococcus sp. JA-3-3Ab F0F1 ATP synthase subunit gamma YP_475515.1 2129478 R 321327 CDS YP_475516.1 86606753 3899160 complement(2130468..2131988) 1 NC_007775.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 2131988 atpA 3899160 atpA Synechococcus sp. JA-3-3Ab F0F1 ATP synthase subunit alpha YP_475516.1 2130468 R 321327 CDS YP_475517.1 86606754 3899161 complement(2132048..2132596) 1 NC_007775.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 2132596 atpH 3899161 atpH Synechococcus sp. JA-3-3Ab F0F1 ATP synthase subunit delta YP_475517.1 2132048 R 321327 CDS YP_475518.1 86606755 3899162 complement(2132613..2133155) 1 NC_007775.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.; F0F1 ATP synthase subunit B 2133155 atpF 3899162 atpF Synechococcus sp. JA-3-3Ab F0F1 ATP synthase subunit B YP_475518.1 2132613 R 321327 CDS YP_475519.1 86606756 3899163 complement(2133209..2133682) 1 NC_007775.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B' 2133682 3899163 CYA_2116 Synechococcus sp. JA-3-3Ab F0F1 ATP synthase subunit B' YP_475519.1 2133209 R 321327 CDS YP_475520.1 86606757 3899106 complement(2133777..2134022) 1 NC_007775.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 2134022 atpE 3899106 atpE Synechococcus sp. JA-3-3Ab F0F1 ATP synthase subunit C YP_475520.1 2133777 R 321327 CDS YP_475521.1 86606758 3899107 complement(2134167..2134298) 1 NC_007775.1 hypothetical protein 2134298 3899107 CYA_2118 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475521.1 2134167 R 321327 CDS YP_475522.1 86606759 3899108 complement(2134252..2134998) 1 NC_007775.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 2134998 atpB 3899108 atpB Synechococcus sp. JA-3-3Ab F0F1 ATP synthase subunit A YP_475522.1 2134252 R 321327 CDS YP_475523.1 86606760 3899109 complement(2135004..2135384) 1 NC_007775.1 identified by similarity to SP:P12403; ATP synthase protein I 2135384 3899109 CYA_2120 Synechococcus sp. JA-3-3Ab ATP synthase protein I YP_475523.1 2135004 R 321327 CDS YP_475524.1 86606761 3899110 2135901..2136488 1 NC_007775.1 identified by similarity to PIR:AB2162; hypothetical protein 2136488 3899110 CYA_2121 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475524.1 2135901 D 321327 CDS YP_475525.1 86606762 3899111 2136485..2136799 1 NC_007775.1 hypothetical protein 2136799 3899111 CYA_2122 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475525.1 2136485 D 321327 CDS YP_475526.1 86606763 3899112 complement(2136813..2138405) 1 NC_007775.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 2138405 gpmI 3899112 gpmI Synechococcus sp. JA-3-3Ab phosphoglyceromutase YP_475526.1 2136813 R 321327 CDS YP_475527.1 86606764 3899113 complement(2138613..2139137) 1 NC_007775.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 2139137 3899113 CYA_2124 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475527.1 2138613 R 321327 CDS YP_475528.1 86606765 3899114 complement(2139180..2139680) 1 NC_007775.1 binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA starvation/stationary phase protection protein Dps 2139680 dps 3899114 dps Synechococcus sp. JA-3-3Ab DNA starvation/stationary phase protection protein Dps YP_475528.1 2139180 R 321327 CDS YP_475529.1 86606766 3899115 complement(2139799..2141178) 1 NC_007775.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 2141178 trmE 3899115 trmE Synechococcus sp. JA-3-3Ab tRNA modification GTPase TrmE YP_475529.1 2139799 R 321327 CDS YP_475530.1 86606767 3899116 2141368..2143968 1 NC_007775.1 identified by similarity to GB:CAA04523.1; match to protein family HMM PF00343; match to protein family HMM TIGR02094; alpha-glucan phosphorylase 2143968 glgP 3899116 glgP Synechococcus sp. JA-3-3Ab alpha-glucan phosphorylase YP_475530.1 2141368 D 321327 CDS YP_475531.1 86606768 3899117 2144130..2145191 1 NC_007775.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; hypothetical protein 2145191 3899117 CYA_2128 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475531.1 2144130 D 321327 CDS YP_475532.1 86606769 3899118 2145184..2145312 1 NC_007775.1 hypothetical protein 2145312 3899118 CYA_2129 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475532.1 2145184 D 321327 CDS YP_475533.1 86606770 3899119 2145309..2145833 1 NC_007775.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2145833 ilvH 3899119 ilvH Synechococcus sp. JA-3-3Ab acetolactate synthase 3 regulatory subunit YP_475533.1 2145309 D 321327 CDS YP_475534.1 86606771 3899120 2145879..2146520 1 NC_007775.1 hypothetical protein 2146520 3899120 CYA_2131 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475534.1 2145879 D 321327 CDS YP_475535.1 86606772 3899121 complement(2146709..2147455) 1 NC_007775.1 hypothetical protein 2147455 3899121 CYA_2132 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475535.1 2146709 R 321327 CDS YP_475536.1 86606773 3899122 2147594..2148640 1 NC_007775.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 2148640 glk 3899122 glk Synechococcus sp. JA-3-3Ab glucokinase YP_475536.1 2147594 D 321327 CDS YP_475537.1 86606774 3899123 complement(2148619..2148723) 1 NC_007775.1 hypothetical protein 2148723 3899123 CYA_2133 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475537.1 2148619 R 321327 CDS YP_475538.1 86606775 3899124 complement(2148726..2149301) 1 NC_007775.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 2149301 3899124 CYA_2135 Synechococcus sp. JA-3-3Ab NUDIX family hydrolase YP_475538.1 2148726 R 321327 CDS YP_475539.1 86606776 3899086 2149406..2150902 1 NC_007775.1 identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00564; anthranilate synthase component I 2150902 trpE 3899086 trpE Synechococcus sp. JA-3-3Ab anthranilate synthase component I YP_475539.1 2149406 D 321327 CDS YP_475540.1 86606777 3899087 2150921..2151715 1 NC_007775.1 identified by match to protein family HMM PF05721; phytanoyl-CoA dioxygenase PhyH family protein 2151715 3899087 CYA_2137 Synechococcus sp. JA-3-3Ab phytanoyl-CoA dioxygenase PhyH family protein YP_475540.1 2150921 D 321327 CDS YP_475541.1 86606778 3899088 2151943..2152863 1 NC_007775.1 identified by match to protein family HMM PF01040; match to protein family HMM TIGR01476; match to protein family HMM TIGR02056; bacteriochlorophyll/chlorophyll a synthase 2152863 chlG 3899088 chlG Synechococcus sp. JA-3-3Ab bacteriochlorophyll/chlorophyll a synthase YP_475541.1 2151943 D 321327 CDS YP_475542.1 86606779 3899089 2152880..2153023 1 NC_007775.1 hypothetical protein 2153023 3899089 CYA_2139 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475542.1 2152880 D 321327 CDS YP_475543.1 86606780 3899090 2153020..2153475 1 NC_007775.1 hypothetical protein 2153475 3899090 CYA_2140 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475543.1 2153020 D 321327 CDS YP_475544.1 86606781 3899091 complement(2153498..2154880) 1 NC_007775.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792; sugar glycoside-pentoside-hexuronide (GPH):cation symporter family protein 2154880 3899091 CYA_2141 Synechococcus sp. JA-3-3Ab sugar glycoside-pentoside-hexuronide (GPH):cation symporter family protein YP_475544.1 2153498 R 321327 CDS YP_475545.1 86606782 3899092 complement(2154964..2156349) 1 NC_007775.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 2156349 aspA 3899092 aspA Synechococcus sp. JA-3-3Ab aspartate ammonia-lyase YP_475545.1 2154964 R 321327 CDS YP_475546.1 86606783 3899093 complement(2156386..2156652) 1 NC_007775.1 hypothetical protein 2156652 3899093 CYA_2143 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475546.1 2156386 R 321327 CDS YP_475547.1 86606784 3899094 2156949..2157506 1 NC_007775.1 identified by similarity to SP:O33567; match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168; translation initiation factor IF-3 2157506 infC 3899094 infC Synechococcus sp. JA-3-3Ab translation initiation factor IF-3 YP_475547.1 2156949 D 321327 CDS YP_475548.1 86606785 3899095 2157522..2157986 1 NC_007775.1 identified by match to protein family HMM PF00578; bacterioferritin comigratory protein 2157986 bcp 3899095 bcp Synechococcus sp. JA-3-3Ab bacterioferritin comigratory protein YP_475548.1 2157522 D 321327 CDS YP_475549.1 86606786 3899096 2158113..2160044 1 NC_007775.1 identified by similarity to GB:AAD42859.1; match to protein family HMM PF00069; serine/threonine protein kinase 2160044 3899096 CYA_2146 Synechococcus sp. JA-3-3Ab serine/threonine protein kinase YP_475549.1 2158113 D 321327 CDS YP_475550.1 86606787 3899097 complement(2160096..2161619) 1 NC_007775.1 identified by match to protein family HMM PF01926; GTP-binding domain-containing protein 2161619 3899097 CYA_2147 Synechococcus sp. JA-3-3Ab GTP-binding domain-containing protein YP_475550.1 2160096 R 321327 CDS YP_475551.1 86606788 3899098 complement(2161837..2162022) 1 NC_007775.1 hypothetical protein 2162022 3899098 CYA_2148 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475551.1 2161837 R 321327 CDS YP_475552.1 86606789 3899099 complement(2161892..2162068) 1 NC_007775.1 hypothetical protein 2162068 3899099 CYA_2149 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475552.1 2161892 R 321327 CDS YP_475553.1 86606790 3899100 complement(2162126..2162611) 1 NC_007775.1 identified by match to protein family HMM PF02469; fasciclin domain-containing protein 2162611 3899100 CYA_2150 Synechococcus sp. JA-3-3Ab fasciclin domain-containing protein YP_475553.1 2162126 R 321327 CDS YP_475554.1 86606791 3899101 2162830..2164593 1 NC_007775.1 identified by match to protein family HMM PF00614; match to protein family HMM PF00633; match to protein family HMM TIGR00426; phospholipase D 2164593 3899101 CYA_2151 Synechococcus sp. JA-3-3Ab phospholipase D YP_475554.1 2162830 D 321327 CDS YP_475555.1 86606792 3899102 complement(2164603..2165586) 1 NC_007775.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 2165586 accA 3899102 accA Synechococcus sp. JA-3-3Ab acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_475555.1 2164603 R 321327 CDS YP_475556.1 86606793 3899103 2165821..2166285 1 NC_007775.1 hypothetical protein 2166285 3899103 CYA_2154 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475556.1 2165821 D 321327 CDS YP_475557.1 86606794 3899104 complement(2166261..2166743) 1 NC_007775.1 hypothetical protein 2166743 3899104 CYA_2153 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475557.1 2166261 R 321327 CDS YP_475558.1 86606795 3899105 complement(2166747..2169575) 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; sensor histindine kinase/response regulator 2169575 3899105 CYA_2155 Synechococcus sp. JA-3-3Ab sensor histindine kinase/response regulator YP_475558.1 2166747 R 321327 CDS YP_475559.1 86606796 3899067 complement(2169520..2170581) 1 NC_007775.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein, truncation 2170581 3899067 CYA_2156 Synechococcus sp. JA-3-3Ab methyl-accepting chemotaxis protein, truncation YP_475559.1 2169520 R 321327 CDS YP_475560.1 86606797 3899068 2170715..2171908 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase 2171908 3899068 CYA_2158 Synechococcus sp. JA-3-3Ab ISSoc1, transposase YP_475560.1 2170715 D 321327 CDS YP_475561.1 86606798 3899069 complement(2171905..2172813) 1 NC_007775.1 identified by similarity to PIR:S76707; hypothetical protein 2172813 3899069 CYA_2157 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475561.1 2171905 R 321327 CDS YP_475562.1 86606799 3899070 complement(2172824..2173066) 1 NC_007775.1 hypothetical protein 2173066 3899070 CYA_2159 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475562.1 2172824 R 321327 CDS YP_475563.1 86606800 3899071 complement(2173121..2173669) 1 NC_007775.1 identified by match to protein family HMM PF01584; CheW domain-containing protein 2173669 3899071 CYA_2160 Synechococcus sp. JA-3-3Ab CheW domain-containing protein YP_475563.1 2173121 R 321327 CDS YP_475564.1 86606801 3899072 complement(2173777..2174151) 1 NC_007775.1 identified by similarity to SP:P43501; match to protein family HMM PF00072; response regulator 2174151 3899072 CYA_2161 Synechococcus sp. JA-3-3Ab response regulator YP_475564.1 2173777 R 321327 CDS YP_475565.1 86606802 3899073 complement(2174199..2175443) 1 NC_007775.1 identified by match to protein family HMM PF00072; response regulator 2175443 3899073 CYA_2162 Synechococcus sp. JA-3-3Ab response regulator YP_475565.1 2174199 R 321327 CDS YP_475566.1 86606803 3899074 complement(2175829..2176308) 1 NC_007775.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 2176308 3899074 CYA_2163 Synechococcus sp. JA-3-3Ab NUDIX family hydrolase YP_475566.1 2175829 R 321327 CDS YP_475567.1 86606804 3899075 complement(2176315..2177547) 1 NC_007775.1 hypothetical protein 2177547 3899075 CYA_2164 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475567.1 2176315 R 321327 CDS YP_475568.1 86606805 3899076 complement(2177602..2177802) 1 NC_007775.1 identified by similarity to PIR:AC2310; hypothetical protein 2177802 3899076 CYA_2165 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475568.1 2177602 R 321327 CDS YP_475569.1 86606806 3899077 complement(2177856..2180051) 1 NC_007775.1 identified by match to protein family HMM PF02171; piwi domain-containing protein 2180051 3899077 CYA_2166 Synechococcus sp. JA-3-3Ab piwi domain-containing protein YP_475569.1 2177856 R 321327 CDS YP_475570.1 86606807 3899078 complement(2180122..2180589) 1 NC_007775.1 hypothetical protein 2180589 3899078 CYA_2167 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475570.1 2180122 R 321327 CDS YP_475571.1 86606808 3899079 complement(2180637..2181737) 1 NC_007775.1 lipoprotein 2181737 3899079 CYA_2168 Synechococcus sp. JA-3-3Ab lipoprotein YP_475571.1 2180637 R 321327 CDS YP_475572.1 86606809 3899080 complement(2181900..2185367) 1 NC_007775.1 identified by match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; match to protein family HMM TIGR02505; ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent, intein-contatining 2185367 nrdJ 3899080 nrdJ Synechococcus sp. JA-3-3Ab ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent, intein-contatining YP_475572.1 2181900 R 321327 CDS YP_475573.1 86606810 3899081 2185700..2186890 1 NC_007775.1 identified by match to protein family HMM PF00571; match to protein family HMM PF02163; M50B family peptidase 2186890 3899081 CYA_2170 Synechococcus sp. JA-3-3Ab M50B family peptidase YP_475573.1 2185700 D 321327 CDS YP_475574.1 86606811 3899082 2187005..2188312 1 NC_007775.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16B family peptidase 2188312 3899082 CYA_2171 Synechococcus sp. JA-3-3Ab M16B family peptidase YP_475574.1 2187005 D 321327 CDS YP_475575.1 86606812 3899083 2188312..2189625 1 NC_007775.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 2189625 3899083 CYA_2172 Synechococcus sp. JA-3-3Ab M16 family peptidase YP_475575.1 2188312 D 321327 CDS YP_475576.1 86606813 3899084 complement(2189855..2190574) 1 NC_007775.1 identified by match to protein family HMM PF04474; hypothetical protein 2190574 3899084 CYA_2173 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475576.1 2189855 R 321327 CDS YP_475577.1 86606814 3899085 2190749..2191273 1 NC_007775.1 identified by match to protein family HMM PF00583; acetyltransferase 2191273 3899085 CYA_2174 Synechococcus sp. JA-3-3Ab acetyltransferase YP_475577.1 2190749 D 321327 CDS YP_475578.1 86606815 3899047 2191277..2191987 1 NC_007775.1 hypothetical protein 2191987 3899047 CYA_2175 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475578.1 2191277 D 321327 CDS YP_475579.1 86606816 3899048 complement(2191994..2192713) 1 NC_007775.1 Psb29; involved in biogenesis of the photosystem II; in Arabidopsis it interacts with the heterotrimeric G-protein (GPA1) and seems to be involved in a D-glucose signaling mechanism between plastid and the plasma membranes; Thf1-like protein 2192713 3899048 CYA_2176 Synechococcus sp. JA-3-3Ab Thf1-like protein YP_475579.1 2191994 R 321327 CDS YP_475580.1 86606817 3899049 2192866..2193981 1 NC_007775.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 2193981 proB 3899049 proB Synechococcus sp. JA-3-3Ab gamma-glutamyl kinase YP_475580.1 2192866 D 321327 CDS YP_475581.1 86606818 3899050 complement(2193986..2195272) 1 NC_007775.1 identified by match to protein family HMM PF07690; major facilitator transporter 2195272 3899050 CYA_2178 Synechococcus sp. JA-3-3Ab major facilitator transporter YP_475581.1 2193986 R 321327 CDS YP_475582.1 86606819 3899051 complement(2195310..2196320) 1 NC_007775.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 2196320 gap-3 3899051 gap-3 Synechococcus sp. JA-3-3Ab glyceraldehyde-3-phosphate dehydrogenase, type I YP_475582.1 2195310 R 321327 CDS YP_475583.1 86606820 3899052 complement(2196566..2197444) 1 NC_007775.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 2197444 murI 3899052 murI Synechococcus sp. JA-3-3Ab glutamate racemase YP_475583.1 2196566 R 321327 CDS YP_475584.1 86606821 3899053 complement(2197595..2199466) 1 NC_007775.1 identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 2199466 3899053 CYA_2181 Synechococcus sp. JA-3-3Ab N-acetylmuramoyl-L-alanine amidase YP_475584.1 2197595 R 321327 CDS YP_475585.1 86606822 3899054 2199575..2200729 1 NC_007775.1 hypothetical protein 2200729 3899054 CYA_2182 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475585.1 2199575 D 321327 CDS YP_475586.1 86606823 3899055 complement(2200785..2203076) 1 NC_007775.1 identified by match to protein family HMM PF00686; nuclease domain-containing protein 2203076 3899055 CYA_2183 Synechococcus sp. JA-3-3Ab nuclease domain-containing protein YP_475586.1 2200785 R 321327 CDS YP_475587.1 86606824 3899056 complement(2203378..2204712) 1 NC_007775.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 2204712 3899056 CYA_2184 Synechococcus sp. JA-3-3Ab sensor histidine kinase YP_475587.1 2203378 R 321327 CDS YP_475588.1 86606825 3899057 complement(2204738..2205343) 1 NC_007775.1 identified by similarity to SP:Q08015; match to protein family HMM PF06175; tRNA-(MS[2]IO[6]A)-hydroxylase 2205343 miaE 3899057 miaE Synechococcus sp. JA-3-3Ab tRNA-(MS[2]IO[6]A)-hydroxylase YP_475588.1 2204738 R 321327 CDS YP_475589.1 86606826 3899058 complement(2205545..2206615) 1 NC_007775.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 2206615 3899058 CYA_2186 Synechococcus sp. JA-3-3Ab phospho-2-dehydro-3-deoxyheptonate aldolase YP_475589.1 2205545 R 321327 CDS YP_475590.1 86606827 3899059 complement(2207155..2208510) 1 NC_007775.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 2208510 3899059 CYA_2187 Synechococcus sp. JA-3-3Ab RND family efflux transporter MFP subunit YP_475590.1 2207155 R 321327 CDS YP_475592.1 86606829 3899061 complement(2208774..2209502) 1 NC_007775.1 identified by similarity to PIR:S76597; match to protein family HMM PF08220; match to protein family HMM TIGR02702; iron-sulfur cluster biosynthesis transcriptional regulator SufR 2209502 sufR 3899061 sufR Synechococcus sp. JA-3-3Ab iron-sulfur cluster biosynthesis transcriptional regulator SufR YP_475592.1 2208774 R 321327 CDS YP_475593.1 86606830 3899062 2209665..2211101 1 NC_007775.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 2211101 sufB 3899062 sufB Synechococcus sp. JA-3-3Ab cysteine desulfurase activator complex subunit SufB YP_475593.1 2209665 D 321327 CDS YP_475594.1 86606831 3899063 2211346..2211744 1 NC_007775.1 identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220; large conductance mechanosensitive channel protein 2211744 mscL 3899063 mscL Synechococcus sp. JA-3-3Ab large conductance mechanosensitive channel protein YP_475594.1 2211346 D 321327 CDS YP_475595.1 86606832 3899064 complement(2211725..2211826) 1 NC_007775.1 hypothetical protein 2211826 3899064 CYA_2191 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475595.1 2211725 R 321327 CDS YP_475596.1 86606833 3899065 2211842..2212657 1 NC_007775.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978; FeS assembly ATPase SufC 2212657 sufC 3899065 sufC Synechococcus sp. JA-3-3Ab FeS assembly ATPase SufC YP_475596.1 2211842 D 321327 CDS YP_475597.1 86606834 3899066 2212654..2213943 1 NC_007775.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981; FeS assembly protein SufD 2213943 sufD 3899066 sufD Synechococcus sp. JA-3-3Ab FeS assembly protein SufD YP_475597.1 2212654 D 321327 CDS YP_475598.1 86606835 3899028 2214617..2215069 1 NC_007775.1 identified by match to protein family HMM TIGR01439; AbrB family transcriptional regulator 2215069 3899028 CYA_2195 Synechococcus sp. JA-3-3Ab AbrB family transcriptional regulator YP_475598.1 2214617 D 321327 CDS YP_475599.1 86606836 3899029 2215206..2216606 1 NC_007775.1 identified by similarity to PIR:AD2437; hypothetical protein 2216606 3899029 CYA_2196 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475599.1 2215206 D 321327 CDS YP_475600.1 86606837 3899030 complement(2216928..2217353) 1 NC_007775.1 identified by match to protein family HMM PF01957; nodulation efficiency family protein 2217353 3899030 CYA_2197 Synechococcus sp. JA-3-3Ab nodulation efficiency family protein YP_475600.1 2216928 R 321327 CDS YP_475601.1 86606838 3899031 complement(2217437..2217676) 1 NC_007775.1 hypothetical protein 2217676 3899031 CYA_2198 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475601.1 2217437 R 321327 CDS YP_475602.1 86606839 3899032 2217819..2218007 1 NC_007775.1 hypothetical protein 2218007 3899032 CYA_2200 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475602.1 2217819 D 321327 CDS YP_475603.1 86606840 3899033 complement(2217989..2219059) 1 NC_007775.1 identified by match to protein family HMM PF01728; ribosomal RNA large subunit methytransferase J 2219059 rrmJ 3899033 rrmJ Synechococcus sp. JA-3-3Ab ribosomal RNA large subunit methytransferase J YP_475603.1 2217989 R 321327 CDS YP_475604.1 86606841 3899034 complement(2219056..2219643) 1 NC_007775.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 2219643 leuD 3899034 leuD Synechococcus sp. JA-3-3Ab isopropylmalate isomerase small subunit YP_475604.1 2219056 R 321327 CDS YP_475605.1 86606842 3899035 2219606..2219800 1 NC_007775.1 hypothetical protein 2219800 3899035 CYA_2203 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475605.1 2219606 D 321327 CDS YP_475606.1 86606843 3899036 complement(2219797..2220123) 1 NC_007775.1 hypothetical protein 2220123 3899036 CYA_2202 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475606.1 2219797 R 321327 CDS YP_475607.1 86606844 3899037 2220165..2220512 1 NC_007775.1 hypothetical protein 2220512 3899037 CYA_2204 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475607.1 2220165 D 321327 CDS YP_475608.1 86606845 3899038 2220509..2220667 1 NC_007775.1 hypothetical protein 2220667 3899038 CYA_2205 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475608.1 2220509 D 321327 CDS YP_475609.1 86606846 3899039 2221071..2222912 1 NC_007775.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 2222912 pyk 3899039 pyk Synechococcus sp. JA-3-3Ab pyruvate kinase YP_475609.1 2221071 D 321327 CDS YP_475610.1 86606847 3899040 2223017..2223148 1 NC_007775.1 hypothetical protein 2223148 3899040 CYA_2207 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475610.1 2223017 D 321327 CDS YP_475611.1 86606848 3899041 2223210..2223746 1 NC_007775.1 hypothetical protein 2223746 3899041 CYA_2208 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475611.1 2223210 D 321327 CDS YP_475612.1 86606849 3899043 2224764..2225393 1 NC_007775.1 identified by match to protein family HMM PF02632; BioY family protein 2225393 3899043 CYA_2210 Synechococcus sp. JA-3-3Ab BioY family protein YP_475612.1 2224764 D 321327 CDS YP_475613.1 86606850 3899044 complement(2226166..2226342) 1 NC_007775.1 hypothetical protein 2226342 3899044 CYA_2211 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475613.1 2226166 R 321327 CDS YP_475614.1 86606851 3899045 complement(2226777..2227883) 1 NC_007775.1 hypothetical protein 2227883 3899045 CYA_2212 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475614.1 2226777 R 321327 CDS YP_475615.1 86606852 3899046 2228071..2228433 1 NC_007775.1 hypothetical protein 2228433 3899046 CYA_2213 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475615.1 2228071 D 321327 CDS YP_475616.1 86606853 3898799 2228458..2228694 1 NC_007775.1 required for 70S ribosome assembly; 50S ribosomal protein L28 2228694 rpmB 3898799 rpmB Synechococcus sp. JA-3-3Ab 50S ribosomal protein L28 YP_475616.1 2228458 D 321327 CDS YP_475617.1 86606854 3898800 complement(2228768..2229514) 1 NC_007775.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 2229514 3898800 CYA_2215 Synechococcus sp. JA-3-3Ab pentapeptide repeat-containing protein YP_475617.1 2228768 R 321327 CDS YP_475618.1 86606855 3898801 2229715..2230662 1 NC_007775.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 2230662 gshB 3898801 gshB Synechococcus sp. JA-3-3Ab glutathione synthetase YP_475618.1 2229715 D 321327 CDS YP_475619.1 86606856 3898802 complement(2231060..2233144) 1 NC_007775.1 identified by match to protein family HMM PF02518; match to protein family HMM PF05226; sensor histidine kinase 2233144 3898802 CYA_2217 Synechococcus sp. JA-3-3Ab sensor histidine kinase YP_475619.1 2231060 R 321327 CDS YP_475620.1 86606857 3898803 complement(2233250..2235388) 1 NC_007775.1 identified by similarity to SP:P50849; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase 2235388 pnpA 3898803 pnpA Synechococcus sp. JA-3-3Ab polynucleotide phosphorylase/polyadenylase YP_475620.1 2233250 R 321327 CDS YP_475621.1 86606858 3898804 2235540..2235965 1 NC_007775.1 identified by similarity to GB:BAB51429.1; arylamine N-acetyltransferase, truncation 2235965 3898804 CYA_2219 Synechococcus sp. JA-3-3Ab arylamine N-acetyltransferase, truncation YP_475621.1 2235540 D 321327 CDS YP_475622.1 86606859 3898806 2237234..2237710 1 NC_007775.1 identified by match to protein family HMM PF01797; ISSoc3, orfA transposase 2237710 3898806 CYA_2221 Synechococcus sp. JA-3-3Ab ISSoc3, orfA transposase YP_475622.1 2237234 D 321327 CDS YP_475623.1 86606860 3898807 2237805..2238347 1 NC_007775.1 identified by similarity to GB:CAF05656.1; N-hydroxyarylamine O-acetyltransferase, truncation 2238347 3898807 CYA_2222 Synechococcus sp. JA-3-3Ab N-hydroxyarylamine O-acetyltransferase, truncation YP_475623.1 2237805 D 321327 CDS YP_475624.1 86606861 3898808 2238391..2240031 1 NC_007775.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2240031 leuA 3898808 leuA Synechococcus sp. JA-3-3Ab 2-isopropylmalate synthase YP_475624.1 2238391 D 321327 CDS YP_475625.1 86606862 3898809 complement(2240056..2241087) 1 NC_007775.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2241087 3898809 CYA_2224 Synechococcus sp. JA-3-3Ab ABC transporter ATP-binding protein YP_475625.1 2240056 R 321327 CDS YP_475626.1 86606863 3898810 complement(2241220..2241423) 1 NC_007775.1 identified by match to protein family HMM PF01383; phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core 2241423 apcC 3898810 apcC Synechococcus sp. JA-3-3Ab phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core YP_475626.1 2241220 R 321327 CDS YP_475627.1 86606864 3898811 complement(2241564..2242049) 1 NC_007775.1 identified by match to protein family HMM PF00502; match to protein family HMM TIGR01337; allophycocyanin subunit beta 2242049 apcB-2 3898811 apcB-2 Synechococcus sp. JA-3-3Ab allophycocyanin subunit beta YP_475627.1 2241564 R 321327 CDS YP_475628.1 86606865 3898812 complement(2242110..2242595) 1 NC_007775.1 identified by match to protein family HMM PF00502; allophycocyanin subunit alpha 2242595 apcA 3898812 apcA Synechococcus sp. JA-3-3Ab allophycocyanin subunit alpha YP_475628.1 2242110 R 321327 CDS YP_475629.1 86606866 3898813 complement(2242917..2243624) 1 NC_007775.1 hypothetical protein 2243624 3898813 CYA_2228 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475629.1 2242917 R 321327 CDS YP_475630.1 86606867 3898814 2244162..2245424 1 NC_007775.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; S1C family peptidase 2245424 3898814 CYA_2229 Synechococcus sp. JA-3-3Ab S1C family peptidase YP_475630.1 2244162 D 321327 CDS YP_475631.1 86606868 3898815 2245576..2246475 1 NC_007775.1 identified by similarity to SP:O32243; match to protein family HMM PF04069; quaternary amine ABC transporter substrate-binding protein 2246475 3898815 CYA_2230 Synechococcus sp. JA-3-3Ab quaternary amine ABC transporter substrate-binding protein YP_475631.1 2245576 D 321327 CDS YP_475632.1 86606869 3898816 2246497..2247465 1 NC_007775.1 identified by similarity to SP:O34992; match to protein family HMM PF00005; quaternary amine ABC transporter ATP-binding protein 2247465 3898816 CYA_2231 Synechococcus sp. JA-3-3Ab quaternary amine ABC transporter ATP-binding protein YP_475632.1 2246497 D 321327 CDS YP_475633.1 86606870 3898817 2247462..2248079 1 NC_007775.1 identified by match to protein family HMM PF00528; quaternary amine ABC transporter permease 2248079 3898817 CYA_2232 Synechococcus sp. JA-3-3Ab quaternary amine ABC transporter permease YP_475633.1 2247462 D 321327 CDS YP_475634.1 86606871 3898818 2248277..2248867 1 NC_007775.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2248867 3898818 CYA_2233 Synechococcus sp. JA-3-3Ab RNA polymerase sigma factor YP_475634.1 2248277 D 321327 CDS YP_475635.1 86606872 3898674 2248888..2249655 1 NC_007775.1 hypothetical protein 2249655 3898674 CYA_2234 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475635.1 2248888 D 321327 CDS YP_475636.1 86606873 3898675 2249700..2250320 1 NC_007775.1 VanW family protein 2250320 3898675 CYA_2235 Synechococcus sp. JA-3-3Ab VanW family protein YP_475636.1 2249700 D 321327 CDS YP_475637.1 86606874 3898676 complement(2250414..2251124) 1 NC_007775.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 2251124 ubiE 3898676 ubiE Synechococcus sp. JA-3-3Ab ubiquinone/menaquinone biosynthesis methyltransferase YP_475637.1 2250414 R 321327 CDS YP_475638.1 86606875 3898677 complement(2251176..2251874) 1 NC_007775.1 identified by similarity to GB:BAC07624.1; hypothetical protein 2251874 3898677 CYA_2237 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475638.1 2251176 R 321327 CDS YP_475639.1 86606876 3898678 complement(2252019..2252297) 1 NC_007775.1 hypothetical protein 2252297 3898678 CYA_2238 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475639.1 2252019 R 321327 CDS YP_475640.1 86606877 3898679 complement(2252345..2252968) 1 NC_007775.1 identified by match to protein family HMM PF00132; chloramphenicol acetyltransferase 2252968 3898679 CYA_2239 Synechococcus sp. JA-3-3Ab chloramphenicol acetyltransferase YP_475640.1 2252345 R 321327 CDS YP_475641.1 86606878 3898680 2253148..2253711 1 NC_007775.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 2253711 cobU 3898680 cobU Synechococcus sp. JA-3-3Ab adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase YP_475641.1 2253148 D 321327 CDS YP_475642.1 86606879 3898681 2253781..2254269 1 NC_007775.1 hypothetical protein 2254269 3898681 CYA_2241 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475642.1 2253781 D 321327 CDS YP_475643.1 86606880 3898682 2254275..2254811 1 NC_007775.1 hypothetical protein 2254811 3898682 CYA_2242 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475643.1 2254275 D 321327 CDS YP_475644.1 86606881 3898683 complement(2254932..2255552) 1 NC_007775.1 identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481; phosphatidylethanolamine-binding protein 2255552 3898683 CYA_2243 Synechococcus sp. JA-3-3Ab phosphatidylethanolamine-binding protein YP_475644.1 2254932 R 321327 CDS YP_475645.1 86606882 3898685 complement(2255670..2256086) 1 NC_007775.1 identified by similarity to GB:BAC90426.1; hypothetical protein 2256086 3898685 CYA_2245 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475645.1 2255670 R 321327 CDS YP_475646.1 86606883 3898686 complement(2256083..2256880) 1 NC_007775.1 hypothetical protein 2256880 3898686 CYA_2246 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475646.1 2256083 R 321327 CDS YP_475647.1 86606884 3898687 complement(2256885..2258225) 1 NC_007775.1 identified by match to protein family HMM PF01523; tldD/pmbA family protein 2258225 3898687 CYA_2247 Synechococcus sp. JA-3-3Ab tldD/pmbA family protein YP_475647.1 2256885 R 321327 CDS YP_475648.1 86606885 3898688 complement(2258238..2258726) 1 NC_007775.1 hypothetical protein 2258726 3898688 CYA_2248 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475648.1 2258238 R 321327 CDS YP_475649.1 86606886 3898689 complement(2258727..2260007) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 2260007 3898689 CYA_2249 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_475649.1 2258727 R 321327 CDS YP_475650.1 86606887 3898690 complement(2259862..2260479) 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 2260479 3898690 CYA_2250 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_475650.1 2259862 R 321327 CDS YP_475651.1 86606888 3898691 complement(2260534..2260992) 1 NC_007775.1 hypothetical protein 2260992 3898691 CYA_2251 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475651.1 2260534 R 321327 CDS YP_475652.1 86606889 3898780 complement(2261008..2262468) 1 NC_007775.1 identified by match to protein family HMM PF01523; U62 family peptidase 2262468 3898780 CYA_2252 Synechococcus sp. JA-3-3Ab U62 family peptidase YP_475652.1 2261008 R 321327 CDS YP_475653.1 86606890 3898781 2262759..2263379 1 NC_007775.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758; uracil-DNA glycosylase 2263379 3898781 CYA_2253 Synechococcus sp. JA-3-3Ab uracil-DNA glycosylase YP_475653.1 2262759 D 321327 CDS YP_475654.1 86606891 3898782 complement(2263460..2264308) 1 NC_007775.1 identified by match to protein family HMM PF01209; match to protein family HMM PF02353; cyclopropane-fatty-acyl-phospholipid synthase family protein 2264308 3898782 CYA_2254 Synechococcus sp. JA-3-3Ab cyclopropane-fatty-acyl-phospholipid synthase family protein YP_475654.1 2263460 R 321327 CDS YP_475655.1 86606892 3898783 complement(2264334..2264471) 1 NC_007775.1 hypothetical protein 2264471 3898783 CYA_2255 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475655.1 2264334 R 321327 CDS YP_475656.1 86606893 3898784 2264431..2266038 1 NC_007775.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 2266038 3898784 CYA_2256 Synechococcus sp. JA-3-3Ab radical SAM domain-containing protein YP_475656.1 2264431 D 321327 CDS YP_475657.1 86606894 3898785 complement(2266059..2266988) 1 NC_007775.1 identified by similarity to SP:P05054; match to protein family HMM PF00294; match to protein family HMM TIGR02152; ribokinase 2266988 rbsK 3898785 rbsK Synechococcus sp. JA-3-3Ab ribokinase YP_475657.1 2266059 R 321327 CDS YP_475658.1 86606895 3898786 2267109..2267420 1 NC_007775.1 identified by similarity to SP:Q8YU66; match to protein family HMM PF01906; hypothetical protein 2267420 3898786 CYA_2258 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475658.1 2267109 D 321327 CDS YP_475659.1 86606896 3898787 complement(2267426..2268175) 1 NC_007775.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 2268175 3898787 CYA_2259 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475659.1 2267426 R 321327 CDS YP_475660.1 86606897 3898788 2268264..2268362 1 NC_007775.1 hypothetical protein 2268362 3898788 CYA_2261 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475660.1 2268264 D 321327 CDS YP_475661.1 86606898 3898789 complement(2268271..2269023) 1 NC_007775.1 hypothetical protein 2269023 3898789 CYA_2260 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475661.1 2268271 R 321327 CDS YP_475662.1 86606899 3898790 2269213..2269932 1 NC_007775.1 hypothetical protein 2269932 3898790 CYA_2263 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475662.1 2269213 D 321327 CDS YP_475663.1 86606900 3898791 complement(2269929..2272094) 1 NC_007775.1 identified by similarity to GB:AAL58474.1; match to protein family HMM PF00069; protein kinase 2272094 3898791 CYA_2262 Synechococcus sp. JA-3-3Ab protein kinase YP_475663.1 2269929 R 321327 CDS YP_475664.1 86606901 3898792 2272522..2273481 1 NC_007775.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2273481 ppnK 3898792 ppnK Synechococcus sp. JA-3-3Ab inorganic polyphosphate/ATP-NAD kinase YP_475664.1 2272522 D 321327 CDS YP_475665.1 86606902 3898793 complement(2273668..2274876) 1 NC_007775.1 identified by similarity to GB:CAD78920.1; match to protein family HMM PF01882; hypothetical protein 2274876 3898793 CYA_2265 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475665.1 2273668 R 321327 CDS YP_475666.1 86606903 3898794 complement(2274972..2276132) 1 NC_007775.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212; DegT/DnrJ/EryC1/StrS aminotransferase family protein 2276132 3898794 CYA_2266 Synechococcus sp. JA-3-3Ab DegT/DnrJ/EryC1/StrS aminotransferase family protein YP_475666.1 2274972 R 321327 CDS YP_475667.1 86606904 3898795 2276671..2277645 1 NC_007775.1 identified by match to protein family HMM PF01075; heptosyltransferase family protein 2277645 3898795 CYA_2267 Synechococcus sp. JA-3-3Ab heptosyltransferase family protein YP_475667.1 2276671 D 321327 CDS YP_475668.1 86606905 3898797 complement(2278032..2279024) 1 NC_007775.1 identified by match to protein family HMM PF01551; M23B family peptidase 2279024 3898797 CYA_2269 Synechococcus sp. JA-3-3Ab M23B family peptidase YP_475668.1 2278032 R 321327 CDS YP_475669.1 86606906 3898798 complement(2279028..2279849) 1 NC_007775.1 identified by similarity to SP:P42975; match to protein family HMM PF03099; match to protein family HMM TIGR00121; biotin--acetyl-CoA-carboxylase ligase 2279849 3898798 CYA_2270 Synechococcus sp. JA-3-3Ab biotin--acetyl-CoA-carboxylase ligase YP_475669.1 2279028 R 321327 CDS YP_475670.1 86606907 3898762 complement(2279868..2280500) 1 NC_007775.1 identified by similarity to PIR:AI2367; hypothetical protein 2280500 3898762 CYA_2271 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475670.1 2279868 R 321327 CDS YP_475671.1 86606908 3898763 complement(2280497..2281234) 1 NC_007775.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 2281234 pdxJ 3898763 pdxJ Synechococcus sp. JA-3-3Ab pyridoxine 5'-phosphate synthase YP_475671.1 2280497 R 321327 CDS YP_475672.1 86606909 3898764 2281403..2282470 1 NC_007775.1 general secretory pathway protein 2282470 3898764 CYA_2273 Synechococcus sp. JA-3-3Ab general secretory pathway protein YP_475672.1 2281403 D 321327 CDS YP_475673.1 86606910 3898765 complement(2282600..2282914) 1 NC_007775.1 hypothetical protein 2282914 3898765 CYA_2274 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475673.1 2282600 R 321327 CDS YP_475674.1 86606911 3898766 2283075..2283761 1 NC_007775.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 2283761 lepB 3898766 lepB Synechococcus sp. JA-3-3Ab signal peptidase I YP_475674.1 2283075 D 321327 CDS YP_475675.1 86606912 3898767 complement(2283777..2284748) 1 NC_007775.1 identified by similarity to SP:P72580; match to protein family HMM PF00348; match to protein family HMM TIGR02749; solanesyl diphosphate synthase 2284748 sds 3898767 sds Synechococcus sp. JA-3-3Ab solanesyl diphosphate synthase YP_475675.1 2283777 R 321327 CDS YP_475676.1 86606913 3898768 2284760..2285257 1 NC_007775.1 identified by similarity to PIR:S76074; match to protein family HMM PF02583; hypothetical protein 2285257 3898768 CYA_2277 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475676.1 2284760 D 321327 CDS YP_475677.1 86606914 3898769 complement(2285309..2285746) 1 NC_007775.1 hypothetical protein 2285746 3898769 CYA_2278 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475677.1 2285309 R 321327 CDS YP_475678.1 86606915 3898770 2285985..2286452 1 NC_007775.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 2286452 rpsP 3898770 rpsP Synechococcus sp. JA-3-3Ab 30S ribosomal protein S16 YP_475678.1 2285985 D 321327 CDS YP_475679.1 86606916 3898771 2286516..2286776 1 NC_007775.1 hypothetical protein 2286776 3898771 CYA_2280 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475679.1 2286516 D 321327 CDS YP_475680.1 86606917 3898772 2286773..2287876 1 NC_007775.1 hypothetical protein 2287876 3898772 CYA_2281 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475680.1 2286773 D 321327 CDS YP_475681.1 86606918 3898773 2287904..2288665 1 NC_007775.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2288665 hisF 3898773 hisF Synechococcus sp. JA-3-3Ab imidazole glycerol phosphate synthase subunit HisF YP_475681.1 2287904 D 321327 CDS YP_475682.1 86606919 3898774 2288683..2289480 1 NC_007775.1 identified by match to protein family HMM PF00459; match to protein family HMM TIGR01331; 3'(2'),5'-bisphosphate nucleotidase 2289480 cysQ 3898774 cysQ Synechococcus sp. JA-3-3Ab 3'(2'),5'-bisphosphate nucleotidase YP_475682.1 2288683 D 321327 CDS YP_475683.1 86606920 3898775 complement(2289492..2289956) 1 NC_007775.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 2289956 3898775 CYA_2284 Synechococcus sp. JA-3-3Ab pentapeptide repeat-containing protein YP_475683.1 2289492 R 321327 CDS YP_475684.1 86606921 3898776 complement(2290125..2290898) 1 NC_007775.1 identified by match to protein family HMM PF04012; pspA/IM30 family protein 2290898 3898776 CYA_2285 Synechococcus sp. JA-3-3Ab pspA/IM30 family protein YP_475684.1 2290125 R 321327 CDS YP_475685.1 86606922 3898779 2291664..2291807 1 NC_007775.1 hypothetical protein 2291807 3898779 CYA_2288 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475685.1 2291664 D 321327 CDS YP_475686.1 86606923 3898724 complement(2291817..2293013) 1 NC_007775.1 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 2293013 3898724 CYA_2289 Synechococcus sp. JA-3-3Ab Ser/Thr protein phosphatase family protein YP_475686.1 2291817 R 321327 CDS YP_475687.1 86606924 3898725 2293258..2293686 1 NC_007775.1 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 2293686 3898725 CYA_2290 Synechococcus sp. JA-3-3Ab FUR family transcriptional regulator YP_475687.1 2293258 D 321327 CDS YP_475688.1 86606925 3898726 complement(2293751..2295856) 1 NC_007775.1 identified by similarity to PIR:AB1961; match to protein family HMM PF03190; hypothetical protein 2295856 3898726 CYA_2291 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475688.1 2293751 R 321327 CDS YP_475689.1 86606926 3898727 complement(2295979..2296602) 1 NC_007775.1 identified by match to protein family HMM PF00583; acetyltransferase 2296602 3898727 CYA_2292 Synechococcus sp. JA-3-3Ab acetyltransferase YP_475689.1 2295979 R 321327 CDS YP_475690.1 86606927 3898728 complement(2296553..2297020) 1 NC_007775.1 identified by match to protein family HMM PF03364; cyclase/dehydrase 2297020 3898728 CYA_2293 Synechococcus sp. JA-3-3Ab cyclase/dehydrase YP_475690.1 2296553 R 321327 CDS YP_475691.1 86606928 3898729 2297213..2298082 1 NC_007775.1 identified by similarity to PIR:AC2026; match to protein family HMM PF04367; hypothetical protein 2298082 3898729 CYA_2295 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475691.1 2297213 D 321327 CDS YP_475692.1 86606929 3898730 complement(2298079..2298411) 1 NC_007775.1 identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase domain-containing protein 2298411 3898730 CYA_2294 Synechococcus sp. JA-3-3Ab antibiotic biosynthesis monooxygenase domain-containing protein YP_475692.1 2298079 R 321327 CDS YP_475693.1 86606930 3898731 complement(2298436..2299770) 1 NC_007775.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2299770 aroA 3898731 aroA Synechococcus sp. JA-3-3Ab 3-phosphoshikimate 1-carboxyvinyltransferase YP_475693.1 2298436 R 321327 CDS YP_475694.1 86606931 3898732 2300104..2301033 1 NC_007775.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 2301033 mraW 3898732 mraW Synechococcus sp. JA-3-3Ab S-adenosyl-methyltransferase MraW YP_475694.1 2300104 D 321327 CDS YP_475695.1 86606932 3898733 2301138..2301674 1 NC_007775.1 identified by similarity to GB:BAD79226.1; hypothetical protein 2301674 3898733 CYA_2299 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475695.1 2301138 D 321327 CDS YP_475696.1 86606933 3898734 complement(2301671..2302414) 1 NC_007775.1 identified by match to protein family HMM PF00072; response regulator 2302414 3898734 CYA_2298 Synechococcus sp. JA-3-3Ab response regulator YP_475696.1 2301671 R 321327 CDS YP_475697.1 86606934 3898735 complement(2302545..2303405) 1 NC_007775.1 identified by similarity to SP:P20692; match to protein family HMM PF02153; match to protein family HMM PF02254; match to protein family HMM PF02558; match to protein family HMM PF03446; match to protein family HMM PF03807; prephenate dehydrogenase 2303405 tyrA 3898735 tyrA Synechococcus sp. JA-3-3Ab prephenate dehydrogenase YP_475697.1 2302545 R 321327 CDS YP_475698.1 86606935 3898736 2303622..2304125 1 NC_007775.1 hypothetical protein 2304125 3898736 CYA_2301 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475698.1 2303622 D 321327 CDS YP_475699.1 86606936 3898737 complement(2304173..2304928) 1 NC_007775.1 identified by match to protein family HMM PF02616; segregation and condensation protein A 2304928 scpA 3898737 scpA Synechococcus sp. JA-3-3Ab segregation and condensation protein A YP_475699.1 2304173 R 321327 CDS YP_475700.1 86606937 3898739 complement(2305896..2306984) 1 NC_007775.1 identified by match to protein family HMM PF07995; glucose/sorbosone dehydrogenase family protein 2306984 3898739 CYA_2304 Synechococcus sp. JA-3-3Ab glucose/sorbosone dehydrogenase family protein YP_475700.1 2305896 R 321327 CDS YP_475701.1 86606938 3898740 2307197..2309632 1 NC_007775.1 identified by match to protein family HMM PF01055; glycosyl hydrolase family protein 2309632 3898740 CYA_2306 Synechococcus sp. JA-3-3Ab glycosyl hydrolase family protein YP_475701.1 2307197 D 321327 CDS YP_475702.1 86606939 3898741 complement(2309629..2310096) 1 NC_007775.1 identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 2310096 3898741 CYA_2305 Synechococcus sp. JA-3-3Ab anti-oxidant AhpCTSA family protein YP_475702.1 2309629 R 321327 CDS YP_475703.1 86606940 3898714 complement(2315321..2315851) 1 NC_007775.1 identified by match to protein family HMM PF00072; response regulator 2315851 3898714 CYA_2312 Synechococcus sp. JA-3-3Ab response regulator YP_475703.1 2315321 R 321327 CDS YP_475704.1 86606941 3898715 complement(2315836..2317419) 1 NC_007775.1 hypothetical protein 2317419 3898715 CYA_2313 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475704.1 2315836 R 321327 CDS YP_475705.1 86606942 3898716 complement(2317558..2317836) 1 NC_007775.1 hypothetical protein 2317836 3898716 CYA_2314 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475705.1 2317558 R 321327 CDS YP_475706.1 86606943 3898717 2318279..2319127 1 NC_007775.1 ABC transporter ATP-binding protein 2319127 3898717 CYA_2315 Synechococcus sp. JA-3-3Ab ABC transporter ATP-binding protein YP_475706.1 2318279 D 321327 CDS YP_475707.1 86606944 3898718 complement(2319170..2319889) 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2319889 3898718 CYA_2316 Synechococcus sp. JA-3-3Ab DNA-binding response regulator YP_475707.1 2319170 R 321327 CDS YP_475708.1 86606945 3898719 2320184..2320645 1 NC_007775.1 hypothetical protein 2320645 3898719 CYA_2317 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475708.1 2320184 D 321327 CDS YP_475709.1 86606946 3898720 2320813..2321619 1 NC_007775.1 hypothetical protein 2321619 3898720 CYA_2318 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475709.1 2320813 D 321327 CDS YP_475710.1 86606947 3898721 2321826..2322668 1 NC_007775.1 identified by similarity to GB:BAC08972.1; hypothetical protein 2322668 3898721 CYA_2319 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475710.1 2321826 D 321327 CDS YP_475711.1 86606948 3898722 2322726..2323265 1 NC_007775.1 hypothetical protein 2323265 3898722 CYA_2320 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475711.1 2322726 D 321327 CDS YP_475712.1 86606949 3898723 2323268..2323912 1 NC_007775.1 catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 2323912 3898723 CYA_2321 Synechococcus sp. JA-3-3Ab cobalt transport protein CbiM YP_475712.1 2323268 D 321327 CDS YP_475713.1 86606950 3897320 2323899..2324714 1 NC_007775.1 identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454; cobalt ABC transporter permease CbiQ 2324714 cbiQ 3897320 cbiQ Synechococcus sp. JA-3-3Ab cobalt ABC transporter permease CbiQ YP_475713.1 2323899 D 321327 CDS YP_475714.1 86606951 3897321 2324913..2326232 1 NC_007775.1 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; MiaB tRNA modifying enzyme-like protein 2326232 yliG 3897321 yliG Synechococcus sp. JA-3-3Ab MiaB tRNA modifying enzyme-like protein YP_475714.1 2324913 D 321327 CDS YP_475715.1 86606952 3897322 2326263..2326955 1 NC_007775.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 2326955 rpiA 3897322 rpiA Synechococcus sp. JA-3-3Ab ribose-5-phosphate isomerase A YP_475715.1 2326263 D 321327 CDS YP_475716.1 86606953 3897323 complement(2326912..2327961) 1 NC_007775.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 2327961 pdxA 3897323 pdxA Synechococcus sp. JA-3-3Ab 4-hydroxythreonine-4-phosphate dehydrogenase YP_475716.1 2326912 R 321327 CDS YP_475717.1 86606954 3897324 2329476..2330453 1 NC_007775.1 identified by similarity to SP:P51266; match to protein family HMM PF02779; match to protein family HMM PF02780; dehydrogenase, E1 component subunit beta 2330453 3897324 CYA_2326 Synechococcus sp. JA-3-3Ab dehydrogenase, E1 component subunit beta YP_475717.1 2329476 D 321327 CDS YP_475718.1 86606955 3897540 2331574..2332773 1 NC_007775.1 identified by match to protein family HMM PF01266; oxidoreductase, FAD-binding 2332773 3897540 CYA_2328 Synechococcus sp. JA-3-3Ab oxidoreductase, FAD-binding YP_475718.1 2331574 D 321327 CDS YP_475719.1 86606956 3897541 complement(2332788..2334683) 1 NC_007775.1 synthesizes RNA primers at the replication forks; DNA primase 2334683 dnaG 3897541 dnaG Synechococcus sp. JA-3-3Ab DNA primase YP_475719.1 2332788 R 321327 CDS YP_475720.1 86606957 3897542 2334829..2335176 1 NC_007775.1 identified by similarity to SP:P28596; match to protein family HMM PF00034; cytochrome c6 2335176 petJ 3897542 petJ Synechococcus sp. JA-3-3Ab cytochrome c6 YP_475720.1 2334829 D 321327 CDS YP_475721.1 86606958 3897543 2335176..2335523 1 NC_007775.1 hypothetical protein 2335523 3897543 CYA_2331 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475721.1 2335176 D 321327 CDS YP_475722.1 86606959 3897544 2335568..2336134 1 NC_007775.1 identified by match to protein family HMM PF07987; nuclear export factor GLE1-like protein 2336134 3897544 CYA_2332 Synechococcus sp. JA-3-3Ab nuclear export factor GLE1-like protein YP_475722.1 2335568 D 321327 CDS YP_475723.1 86606960 3897545 2336152..2337768 1 NC_007775.1 identified by match to protein family HMM PF04234; copper resistance protein C/D 2337768 copCD 3897545 copCD Synechococcus sp. JA-3-3Ab copper resistance protein C/D YP_475723.1 2336152 D 321327 CDS YP_475724.1 86606961 3897546 complement(2337765..2340623) 1 NC_007775.1 identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07719; TPR repeat- and protein kinase domain-containing protein 2340623 3897546 CYA_2333 Synechococcus sp. JA-3-3Ab TPR repeat- and protein kinase domain-containing protein YP_475724.1 2337765 R 321327 CDS YP_475725.1 86606962 3897547 complement(2340708..2341106) 1 NC_007775.1 identified by similarity to PIR:AF2318; hypothetical protein 2341106 3897547 CYA_2335 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475725.1 2340708 R 321327 CDS YP_475726.1 86606963 3897548 2341359..2342393 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01966; match to protein family HMM TIGR00277; response regulator 2342393 3897548 CYA_2336 Synechococcus sp. JA-3-3Ab response regulator YP_475726.1 2341359 D 321327 CDS YP_475727.1 86606964 3897549 2342432..2342749 1 NC_007775.1 identified by similarity to GB:BAD80264.1; match to protein family HMM PF04296; hypothetical protein 2342749 3897549 CYA_2337 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475727.1 2342432 D 321327 CDS YP_475728.1 86606965 3897550 2343138..2346233 1 NC_007775.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 2346233 infB 3897550 infB Synechococcus sp. JA-3-3Ab translation initiation factor IF-2 YP_475728.1 2343138 D 321327 CDS YP_475729.1 86606966 3897551 2346336..2348165 1 NC_007775.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 2348165 proS 3897551 proS Synechococcus sp. JA-3-3Ab prolyl-tRNA synthetase YP_475729.1 2346336 D 321327 CDS YP_475730.1 86606967 3897552 2348187..2348804 1 NC_007775.1 hypothetical protein 2348804 3897552 CYA_2340 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475730.1 2348187 D 321327 CDS YP_475731.1 86606968 3897553 2348801..2349076 1 NC_007775.1 hypothetical protein 2349076 3897553 CYA_2341 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475731.1 2348801 D 321327 CDS YP_475732.1 86606969 3897554 complement(2349173..2350231) 1 NC_007775.1 hypothetical protein 2350231 3897554 CYA_2342 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475732.1 2349173 R 321327 CDS YP_475733.1 86606970 3897555 complement(2350437..2350862) 1 NC_007775.1 identified by match to protein family HMM PF07282; ISSoc1, transposase, truncation 2350862 3897555 CYA_2343 Synechococcus sp. JA-3-3Ab ISSoc1, transposase, truncation YP_475733.1 2350437 R 321327 CDS YP_475734.1 86606971 3897556 complement(2350926..2351390) 1 NC_007775.1 hypothetical protein 2351390 3897556 CYA_2344 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475734.1 2350926 R 321327 CDS YP_475735.1 86606972 3897557 2351600..2351728 1 NC_007775.1 hypothetical protein 2351728 3897557 CYA_2345 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475735.1 2351600 D 321327 CDS YP_475736.1 86606973 3897558 complement(2352095..2354095) 1 NC_007775.1 identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232; transketolase 2354095 tkt 3897558 tkt Synechococcus sp. JA-3-3Ab transketolase YP_475736.1 2352095 R 321327 CDS YP_475737.1 86606974 3897634 2354507..2355397 1 NC_007775.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 2355397 lipA-3 3897634 lipA-3 Synechococcus sp. JA-3-3Ab lipoyl synthase YP_475737.1 2354507 D 321327 CDS YP_475738.1 86606975 3897635 complement(2356031..2356699) 1 NC_007775.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2356699 3897635 CYA_2348 Synechococcus sp. JA-3-3Ab TetR family transcriptional regulator YP_475738.1 2356031 R 321327 CDS YP_475739.1 86606976 3897636 2357019..2357912 1 NC_007775.1 identified by match to protein family HMM PF00487; fatty acid desaturase 2357912 3897636 CYA_2349 Synechococcus sp. JA-3-3Ab fatty acid desaturase YP_475739.1 2357019 D 321327 CDS YP_475740.1 86606977 3897637 complement(2358244..2358513) 1 NC_007775.1 hypothetical protein 2358513 3897637 CYA_2350 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475740.1 2358244 R 321327 CDS YP_475741.1 86606978 3897638 complement(2358672..2358935) 1 NC_007775.1 identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 2358935 3897638 CYA_2351 Synechococcus sp. JA-3-3Ab LuxR family transcriptional regulator YP_475741.1 2358672 R 321327 CDS YP_475742.1 86606979 3897639 complement(2359086..2360345) 1 NC_007775.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 2360345 3897639 CYA_2352 Synechococcus sp. JA-3-3Ab sensor histidine kinase YP_475742.1 2359086 R 321327 CDS YP_475743.1 86606980 3897640 complement(2360426..2361190) 1 NC_007775.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase 2361190 3897640 CYA_2353 Synechococcus sp. JA-3-3Ab short chain dehydrogenase/reductase family oxidoreductase YP_475743.1 2360426 R 321327 CDS YP_475744.1 86606981 3897642 2362620..2363096 1 NC_007775.1 identified by match to protein family HMM PF01797; ISSoc3, orfA transposase 2363096 3897642 CYA_2355 Synechococcus sp. JA-3-3Ab ISSoc3, orfA transposase YP_475744.1 2362620 D 321327 CDS YP_475745.1 86606982 3897643 complement(2363124..2364110) 1 NC_007775.1 identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03807; match to protein family HMM TIGR00745; 2-dehydropantoate 2-reductase 2364110 panE-2 3897643 panE-2 Synechococcus sp. JA-3-3Ab 2-dehydropantoate 2-reductase YP_475745.1 2363124 R 321327 CDS YP_475746.1 86606983 3897644 complement(2364133..2364240) 1 NC_007775.1 Ycf31; cytochrome b6-f complex subunit 7; with PetL, PetG and PetN makes up the small subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I; cytochrome b6-f complex subunit PetM 2364240 petM 3897644 petM Synechococcus sp. JA-3-3Ab cytochrome b6-f complex subunit PetM YP_475746.1 2364133 R 321327 CDS YP_475747.1 86606984 3897645 2364734..2365792 1 NC_007775.1 identified by match to protein family HMM PF00124; match to protein family HMM TIGR01152; photosystem II protein D2 2365792 psbD-1 3897645 psbD-1 Synechococcus sp. JA-3-3Ab photosystem II protein D2 YP_475747.1 2364734 D 321327 CDS YP_475748.1 86606985 3897646 2365935..2367356 1 NC_007775.1 identified by match to protein family HMM PF00421; match to protein family HMM TIGR01153; photosystem II 44 kDa subunit reaction center protein 2367356 psbC 3897646 psbC Synechococcus sp. JA-3-3Ab photosystem II 44 kDa subunit reaction center protein YP_475748.1 2365935 D 321327 CDS YP_475749.1 86606986 3897647 2367488..2368546 1 NC_007775.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683; match to protein family HMM TIGR02475; cobalamin biosynthesis protein CobW 2368546 cobW 3897647 cobW Synechococcus sp. JA-3-3Ab cobalamin biosynthesis protein CobW YP_475749.1 2367488 D 321327 CDS YP_475750.1 86606987 3897648 complement(2368608..2369564) 1 NC_007775.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein 2369564 3897648 CYA_2361 Synechococcus sp. JA-3-3Ab NAD-dependent epimerase/dehydratase family protein YP_475750.1 2368608 R 321327 CDS YP_475751.1 86606988 3897649 2369787..2370812 1 NC_007775.1 identified by similarity to SP:P42062; match to protein family HMM PF00528; OppBC ABC transporter family permease 2370812 3897649 CYA_2362 Synechococcus sp. JA-3-3Ab OppBC ABC transporter family permease YP_475751.1 2369787 D 321327 CDS YP_475752.1 86606989 3897650 2370850..2373006 1 NC_007775.1 hypothetical protein 2373006 3897650 CYA_2363 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475752.1 2370850 D 321327 CDS YP_475753.1 86606990 3897651 complement(2373011..2373751) 1 NC_007775.1 hypothetical protein 2373751 3897651 CYA_2364 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475753.1 2373011 R 321327 CDS YP_475754.1 86606991 3897652 complement(2373876..2374745) 1 NC_007775.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 2374745 fabD 3897652 fabD Synechococcus sp. JA-3-3Ab malonyl CoA-acyl carrier protein transacylase YP_475754.1 2373876 R 321327 CDS YP_475755.1 86606992 3897672 complement(2374765..2375772) 1 NC_007775.1 identified by match to protein family HMM PF02797; match to protein family HMM TIGR00747; 3-oxoacyl-(acyl-carrier-protein) synthase III 2375772 fabH 3897672 fabH Synechococcus sp. JA-3-3Ab 3-oxoacyl-(acyl-carrier-protein) synthase III YP_475755.1 2374765 R 321327 CDS YP_475756.1 86606993 3897673 complement(2375778..2376869) 1 NC_007775.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 2376869 plsX 3897673 plsX Synechococcus sp. JA-3-3Ab glycerol-3-phosphate acyltransferase PlsX YP_475756.1 2375778 R 321327 CDS YP_475757.1 86606994 3897674 complement(2377352..2379085) 1 NC_007775.1 hypothetical protein 2379085 3897674 CYA_2368 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475757.1 2377352 R 321327 CDS YP_475758.1 86606995 3897675 2379498..2380418 1 NC_007775.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 2380418 trpC 3897675 trpC Synechococcus sp. JA-3-3Ab indole-3-glycerol-phosphate synthase YP_475758.1 2379498 D 321327 CDS YP_475759.1 86606996 3897676 2380459..2380698 1 NC_007775.1 hypothetical protein 2380698 3897676 CYA_2370 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475759.1 2380459 D 321327 CDS YP_475760.1 86606997 3897677 2380763..2380957 1 NC_007775.1 identified by similarity to PDB:1SB6_A; copper metallochaperone 2380957 3897677 CYA_2371 Synechococcus sp. JA-3-3Ab copper metallochaperone YP_475760.1 2380763 D 321327 CDS YP_475761.1 86606998 3897678 2381068..2383401 1 NC_007775.1 identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 2383401 3897678 CYA_2372 Synechococcus sp. JA-3-3Ab copper-translocating P-type ATPase YP_475761.1 2381068 D 321327 CDS YP_475762.1 86606999 3897679 2383610..2384638 1 NC_007775.1 identified by similarity to SP:O87690; similarity to SP:Q55451; match to protein family HMM PF01903; sirohydrochlorin cobaltochelatase 2384638 cbiX 3897679 cbiX Synechococcus sp. JA-3-3Ab sirohydrochlorin cobaltochelatase YP_475762.1 2383610 D 321327 CDS YP_475763.1 86607000 3897680 2384822..2385643 1 NC_007775.1 hypothetical protein 2385643 3897680 CYA_2375 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475763.1 2384822 D 321327 CDS YP_475764.1 86607001 3897681 complement(2385640..2386257) 1 NC_007775.1 identified by match to protein family HMM PF04755; PAP/fibrillin family protein 2386257 3897681 CYA_2374 Synechococcus sp. JA-3-3Ab PAP/fibrillin family protein YP_475764.1 2385640 R 321327 CDS YP_475765.1 86607002 3897682 complement(2386313..2387020) 1 NC_007775.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 2387020 3897682 CYA_2376 Synechococcus sp. JA-3-3Ab Sua5/YciO/YrdC/YwlC family protein YP_475765.1 2386313 R 321327 CDS YP_475766.1 86607003 3897683 complement(2387042..2387377) 1 NC_007775.1 identified by similarity to PIR:AH2287; hypothetical protein 2387377 3897683 CYA_2377 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475766.1 2387042 R 321327 CDS YP_475767.1 86607004 3897684 complement(2387352..2388509) 1 NC_007775.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 2388509 obgE 3897684 obgE Synechococcus sp. JA-3-3Ab GTPase ObgE YP_475767.1 2387352 R 321327 CDS YP_475768.1 86607005 3897685 2388710..2389681 1 NC_007775.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2389681 rpsA 3897685 rpsA Synechococcus sp. JA-3-3Ab 30S ribosomal protein S1 YP_475768.1 2388710 D 321327 CDS YP_475769.1 86607006 3897686 2389689..2389793 1 NC_007775.1 hypothetical protein 2389793 3897686 CYA_2380 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475769.1 2389689 D 321327 CDS YP_475770.1 86607007 3897687 2389808..2391094 1 NC_007775.1 identified by match to protein family HMM PF07508; resolvase family site-specific recombinase 2391094 3897687 CYA_2381 Synechococcus sp. JA-3-3Ab resolvase family site-specific recombinase YP_475770.1 2389808 D 321327 CDS YP_475771.1 86607008 3897688 2391460..2392311 1 NC_007775.1 light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production; protochlorophyllide reductase iron-sulfur ATP-binding protein 2392311 chlL 3897688 chlL Synechococcus sp. JA-3-3Ab protochlorophyllide reductase iron-sulfur ATP-binding protein YP_475771.1 2391460 D 321327 CDS YP_475772.1 86607009 3897689 2392470..2393447 1 NC_007775.1 Converts chlorophyllide a into protochlorophyllide; light dependent; protochlorophyllide oxidoreductase 2393447 3897689 CYA_2383 Synechococcus sp. JA-3-3Ab protochlorophyllide oxidoreductase YP_475772.1 2392470 D 321327 CDS YP_475773.1 86607010 3897690 2393477..2394877 1 NC_007775.1 light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit N 2394877 chlN 3897690 chlN Synechococcus sp. JA-3-3Ab light-independent protochlorophyllide reductase subunit N YP_475773.1 2393477 D 321327 CDS YP_475774.1 86607011 3897691 complement(2394874..2395110) 1 NC_007775.1 hypothetical protein 2395110 3897691 CYA_2384 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475774.1 2394874 R 321327 CDS YP_475775.1 86607012 3898472 complement(2395186..2396496) 1 NC_007775.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 2396496 hemL 3898472 hemL Synechococcus sp. JA-3-3Ab glutamate-1-semialdehyde aminotransferase YP_475775.1 2395186 R 321327 CDS YP_475776.1 86607013 3898473 complement(2396575..2397813) 1 NC_007775.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2397813 ispG 3898473 ispG Synechococcus sp. JA-3-3Ab 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_475776.1 2396575 R 321327 CDS YP_475777.1 86607014 3898474 complement(2398539..2399060) 1 NC_007775.1 identified by similarity to PIR:S77403; match to protein family HMM PF02577; hypothetical protein 2399060 3898474 CYA_2388 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475777.1 2398539 R 321327 CDS YP_475778.1 86607015 3898475 2399147..2399950 1 NC_007775.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 2399950 cobK 3898475 cobK Synechococcus sp. JA-3-3Ab cobalt-precorrin-6x reductase YP_475778.1 2399147 D 321327 CDS YP_475779.1 86607016 3898476 complement(2399908..2400264) 1 NC_007775.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 2400264 3898476 CYA_2389 Synechococcus sp. JA-3-3Ab single-stranded DNA-binding protein YP_475779.1 2399908 R 321327 CDS YP_475780.1 86607017 3898477 2400637..2402787 1 NC_007775.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NAD(P)H-quinone oxidoreductase subunit F 2402787 3898477 CYA_2391 Synechococcus sp. JA-3-3Ab NAD(P)H-quinone oxidoreductase subunit F YP_475780.1 2400637 D 321327 CDS YP_475781.1 86607018 3898478 2402868..2403461 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 2403461 3898478 CYA_2392 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_475781.1 2402868 D 321327 CDS YP_475782.1 86607019 3898479 2403316..2404596 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 2404596 3898479 CYA_2393 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_475782.1 2403316 D 321327 CDS YP_475783.1 86607020 3898480 complement(2405090..2405869) 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2405869 3898480 CYA_2394 Synechococcus sp. JA-3-3Ab DNA-binding response regulator YP_475783.1 2405090 R 321327 CDS YP_475784.1 86607021 3898481 2405868..2407043 1 NC_007775.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 2407043 fni 3898481 fni Synechococcus sp. JA-3-3Ab isopentenyl pyrophosphate isomerase YP_475784.1 2405868 D 321327 CDS YP_475785.1 86607022 3898482 complement(2407304..2408917) 1 NC_007775.1 hypothetical protein 2408917 3898482 CYA_2396 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475785.1 2407304 R 321327 CDS YP_475786.1 86607023 3898484 complement(2409118..2409318) 1 NC_007775.1 hypothetical protein 2409318 3898484 CYA_2398 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475786.1 2409118 R 321327 CDS YP_475787.1 86607024 3898485 complement(2409290..2409985) 1 NC_007775.1 identified by similarity to GB:BAD78649.1; hypothetical protein 2409985 3898485 CYA_2399 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475787.1 2409290 R 321327 CDS YP_475788.1 86607025 3898486 2410282..2410488 1 NC_007775.1 hypothetical protein 2410488 3898486 CYA_2400 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475788.1 2410282 D 321327 CDS YP_475789.1 86607026 3898487 2410355..2412211 1 NC_007775.1 identified by similarity to GB:AAD48483.1; match to protein family HMM PF00082; S8A family peptidase 2412211 3898487 CYA_2401 Synechococcus sp. JA-3-3Ab S8A family peptidase YP_475789.1 2410355 D 321327 CDS YP_475790.1 86607027 3898488 2412211..2412432 1 NC_007775.1 hypothetical protein 2412432 3898488 CYA_2402 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475790.1 2412211 D 321327 CDS YP_475791.1 86607028 3898489 complement(2412534..2412893) 1 NC_007775.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 2412893 3898489 CYA_2403 Synechococcus sp. JA-3-3Ab pentapeptide repeat-containing protein YP_475791.1 2412534 R 321327 CDS YP_475792.1 86607029 3898491 complement(2414646..2415662) 1 NC_007775.1 identified by match to protein family HMM PF00211; match to protein family HMM PF00498; adenylate cyclase 2415662 3898491 CYA_2405 Synechococcus sp. JA-3-3Ab adenylate cyclase YP_475792.1 2414646 R 321327 CDS YP_475793.1 86607030 3898492 2415796..2416281 1 NC_007775.1 identified by similarity to GB:BAC88790.1; match to protein family HMM PF06799; hypothetical protein 2416281 3898492 CYA_2406 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475793.1 2415796 D 321327 CDS YP_475794.1 86607031 3898493 2416329..2417261 1 NC_007775.1 identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; riboflavin biosynthesis protein RibF 2417261 ribF 3898493 ribF Synechococcus sp. JA-3-3Ab riboflavin biosynthesis protein RibF YP_475794.1 2416329 D 321327 CDS YP_475795.1 86607032 3898494 complement(2417309..2418088) 1 NC_007775.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 2418088 cobS 3898494 cobS Synechococcus sp. JA-3-3Ab cobalamin synthase YP_475795.1 2417309 R 321327 CDS YP_475796.1 86607033 3898495 complement(2418121..2418465) 1 NC_007775.1 identified by similarity to GB:BAC88059.1; hypothetical protein 2418465 3898495 CYA_2409 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475796.1 2418121 R 321327 CDS YP_475797.1 86607034 3898496 complement(2418526..2419740) 1 NC_007775.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 2419740 rpoD 3898496 rpoD Synechococcus sp. JA-3-3Ab RNA polymerase sigma factor RpoD YP_475797.1 2418526 R 321327 CDS YP_475798.1 86607035 3898497 2420392..2424051 1 NC_007775.1 identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082; methionine synthase 2424051 metH 3898497 metH Synechococcus sp. JA-3-3Ab methionine synthase YP_475798.1 2420392 D 321327 CDS YP_475799.1 86607036 3898498 complement(2424056..2424829) 1 NC_007775.1 identified by similarity to SP:P23859; match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease PotC 2424829 potC 3898498 potC Synechococcus sp. JA-3-3Ab spermidine/putrescine ABC transporter permease PotC YP_475799.1 2424056 R 321327 CDS YP_475800.1 86607037 3898499 complement(2425128..2425949) 1 NC_007775.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 2425949 3898499 CYA_2413 Synechococcus sp. JA-3-3Ab alpha/beta fold family hydrolase YP_475800.1 2425128 R 321327 CDS YP_475801.1 86607038 3898500 complement(2426047..2426199) 1 NC_007775.1 hypothetical protein 2426199 3898500 CYA_2414 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475801.1 2426047 R 321327 CDS YP_475802.1 86607039 3898501 complement(2426212..2426688) 1 NC_007775.1 identified by match to protein family HMM PF01797; ISSoc3, orfA transposase 2426688 3898501 CYA_2415 Synechococcus sp. JA-3-3Ab ISSoc3, orfA transposase YP_475802.1 2426212 R 321327 CDS YP_475803.1 86607040 3898503 complement(2427961..2428911) 1 NC_007775.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 2428911 3898503 CYA_2417 Synechococcus sp. JA-3-3Ab LysR family transcriptional regulator YP_475803.1 2427961 R 321327 CDS YP_475804.1 86607041 3898504 complement(2429181..2429828) 1 NC_007775.1 hypothetical protein 2429828 3898504 CYA_2418 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475804.1 2429181 R 321327 CDS YP_475805.1 86607042 3898505 complement(2430090..2430578) 1 NC_007775.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01668; HAD family phosphatase 2430578 yqeG 3898505 yqeG Synechococcus sp. JA-3-3Ab HAD family phosphatase YP_475805.1 2430090 R 321327 CDS YP_475806.1 86607043 3898506 complement(2430622..2431743) 1 NC_007775.1 identified by similarity to GB:CAG37649.1; match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein 2431743 3898506 CYA_2420 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475806.1 2430622 R 321327 CDS YP_475807.1 86607044 3898507 complement(2431864..2432628) 1 NC_007775.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 2432628 pyrH 3898507 pyrH Synechococcus sp. JA-3-3Ab uridylate kinase YP_475807.1 2431864 R 321327 CDS YP_475808.1 86607045 3898508 complement(2432727..2432879) 1 NC_007775.1 identified by similarity to PIR:S77143; hypothetical protein 2432879 3898508 CYA_2422 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475808.1 2432727 R 321327 CDS YP_475809.1 86607046 3898604 complement(2432987..2433358) 1 NC_007775.1 identified by match to protein family HMM PF01169; hypothetical protein 2433358 3898604 CYA_2423 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475809.1 2432987 R 321327 CDS YP_475810.1 86607047 3898605 complement(2433346..2434626) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 2434626 3898605 CYA_2424 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_475810.1 2433346 R 321327 CDS YP_475811.1 86607048 3898606 complement(2434481..2435074) 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 2435074 3898606 CYA_2425 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_475811.1 2434481 R 321327 CDS YP_475812.1 86607049 3898608 complement(2436836..2436955) 1 NC_007775.1 may be involved in assembling and maintaining PSII complexes in the thylakoid membrane; photosystem II reaction center protein J 2436955 psbJ 3898608 psbJ Synechococcus sp. JA-3-3Ab photosystem II reaction center protein J YP_475812.1 2436836 R 321327 CDS YP_475813.1 86607050 3898609 complement(2437096..2437221) 1 NC_007775.1 identified by match to protein family HMM PF02419; photosystem II reaction center protein PsbL 2437221 psbL 3898609 psbL Synechococcus sp. JA-3-3Ab photosystem II reaction center protein PsbL YP_475813.1 2437096 R 321327 CDS YP_475814.1 86607051 3898610 complement(2437227..2437370) 1 NC_007775.1 photosystem II reaction center subunit VI; associated with the reaction center of photosystem II; cytochrome b559 subunit beta 2437370 psbF 3898610 psbF Synechococcus sp. JA-3-3Ab cytochrome b559 subunit beta YP_475814.1 2437227 R 321327 CDS YP_475815.1 86607052 3898611 complement(2437454..2437699) 1 NC_007775.1 photosystem II reaction center subunit VI; associated with the reaction center of photosystem II; cytochrome b559 subunit alpha 2437699 psbE 3898611 psbE Synechococcus sp. JA-3-3Ab cytochrome b559 subunit alpha YP_475815.1 2437454 R 321327 CDS YP_475816.1 86607053 3898612 2438016..2439716 1 NC_007775.1 S-layer protein 2439716 3898612 CYA_2431 Synechococcus sp. JA-3-3Ab S-layer protein YP_475816.1 2438016 D 321327 CDS YP_475817.1 86607054 3898613 complement(2440022..2441761) 1 NC_007775.1 identified by similarity to GB:AAD29107.1; match to protein family HMM PF01966; match to protein family HMM PF02541; exopolyphosphatase 2441761 3898613 CYA_2432 Synechococcus sp. JA-3-3Ab exopolyphosphatase YP_475817.1 2440022 R 321327 CDS YP_475818.1 86607055 3898614 2441939..2443750 1 NC_007775.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2443750 thrS 3898614 thrS Synechococcus sp. JA-3-3Ab threonyl-tRNA synthetase YP_475818.1 2441939 D 321327 CDS YP_475819.1 86607056 3898615 2443789..2444127 1 NC_007775.1 carbohydrate ABC transporter ATP-binding protein 2444127 3898615 CYA_2434 Synechococcus sp. JA-3-3Ab carbohydrate ABC transporter ATP-binding protein YP_475819.1 2443789 D 321327 CDS YP_475820.1 86607057 3898616 2444148..2445353 1 NC_007775.1 identified by match to protein family HMM PF03069; acetamidase/formamidase family protein 2445353 3898616 CYA_2435 Synechococcus sp. JA-3-3Ab acetamidase/formamidase family protein YP_475820.1 2444148 D 321327 CDS YP_475821.1 86607058 3898617 2445984..2447531 1 NC_007775.1 identified by match to protein family HMM PF00005; carbohydrate ABC transporter ATP-binding protein 2447531 3898617 CYA_2437 Synechococcus sp. JA-3-3Ab carbohydrate ABC transporter ATP-binding protein YP_475821.1 2445984 D 321327 CDS YP_475822.1 86607059 3898618 complement(2447528..2449129) 1 NC_007775.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 2449129 malQ 3898618 malQ Synechococcus sp. JA-3-3Ab 4-alpha-glucanotransferase YP_475822.1 2447528 R 321327 CDS YP_475823.1 86607060 3898619 complement(2449285..2449941) 1 NC_007775.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 2449941 pyrE 3898619 pyrE Synechococcus sp. JA-3-3Ab orotate phosphoribosyltransferase YP_475823.1 2449285 R 321327 CDS YP_475824.1 86607061 3898620 2450193..2450786 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 2450786 3898620 CYA_2439 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_475824.1 2450193 D 321327 CDS YP_475825.1 86607062 3898621 2450641..2451921 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 2451921 3898621 CYA_2440 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_475825.1 2450641 D 321327 CDS YP_475826.1 86607063 3898622 complement(2451933..2452448) 1 NC_007775.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 2452448 3898622 CYA_2441 Synechococcus sp. JA-3-3Ab MarR family transcriptional regulator YP_475826.1 2451933 R 321327 CDS YP_475827.1 86607064 3898623 complement(2452624..2452761) 1 NC_007775.1 hypothetical protein 2452761 3898623 CYA_2442 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475827.1 2452624 R 321327 CDS YP_475828.1 86607065 3898624 2452833..2454146 1 NC_007775.1 hypothetical protein 2454146 3898624 CYA_2444 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475828.1 2452833 D 321327 CDS YP_475829.1 86607066 3898625 complement(2454051..2454224) 1 NC_007775.1 hypothetical protein 2454224 3898625 CYA_2443 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475829.1 2454051 R 321327 CDS YP_475830.1 86607067 3898626 complement(2454482..2455057) 1 NC_007775.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 2455057 yfiA 3898626 yfiA Synechococcus sp. JA-3-3Ab ribosomal subunit interface protein YP_475830.1 2454482 R 321327 CDS YP_475831.1 86607068 3898627 2455787..2457031 1 NC_007775.1 identified by similarity to GB:AAB99854.1; match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM PF06838; aluminium resistance protein 2457031 3898627 CYA_2446 Synechococcus sp. JA-3-3Ab aluminium resistance protein YP_475831.1 2455787 D 321327 CDS YP_475832.1 86607069 3898628 2457021..2457923 1 NC_007775.1 hypothetical protein 2457923 3898628 CYA_2447 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475832.1 2457021 D 321327 CDS YP_475833.1 86607070 3898629 2458260..2458475 1 NC_007775.1 hypothetical protein 2458475 3898629 CYA_2448 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475833.1 2458260 D 321327 CDS YP_475834.1 86607071 3898630 2458518..2458820 1 NC_007775.1 identified by match to protein family HMM PF03647; hypothetical protein 2458820 3898630 CYA_2449 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475834.1 2458518 D 321327 CDS YP_475835.1 86607072 3898631 complement(2458904..2459488) 1 NC_007775.1 identified by similarity to GB:CAA62019.1; S-layer protein 2459488 3898631 CYA_2450 Synechococcus sp. JA-3-3Ab S-layer protein YP_475835.1 2458904 R 321327 CDS YP_475836.1 86607073 3898632 complement(2459537..2459743) 1 NC_007775.1 hypothetical protein 2459743 3898632 CYA_2451 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475836.1 2459537 R 321327 CDS YP_475837.1 86607074 3898633 2459752..2460189 1 NC_007775.1 identified by match to protein family HMM PF07719; hypothetical protein 2460189 3898633 CYA_2453 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475837.1 2459752 D 321327 CDS YP_475838.1 86607075 3898634 complement(2460170..2460364) 1 NC_007775.1 hypothetical protein 2460364 3898634 CYA_2452 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475838.1 2460170 R 321327 CDS YP_475839.1 86607076 3898635 complement(2460477..2461535) 1 NC_007775.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 2461535 thrC-2 3898635 thrC-2 Synechococcus sp. JA-3-3Ab threonine synthase YP_475839.1 2460477 R 321327 CDS YP_475840.1 86607077 3898636 complement(2461689..2463218) 1 NC_007775.1 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; isochorismate synthase 2463218 3898636 CYA_2455 Synechococcus sp. JA-3-3Ab isochorismate synthase YP_475840.1 2461689 R 321327 CDS YP_475841.1 86607078 3898637 2463470..2464447 1 NC_007775.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 2464447 menA 3898637 menA Synechococcus sp. JA-3-3Ab 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_475841.1 2463470 D 321327 CDS YP_475842.1 86607079 3898638 2464589..2466427 1 NC_007775.1 hypothetical protein 2466427 3898638 CYA_2457 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475842.1 2464589 D 321327 CDS YP_475843.1 86607080 3898639 2466505..2467683 1 NC_007775.1 identified by match to protein family HMM PF03739; YjgP/YjgQ family protein 2467683 3898639 CYA_2458 Synechococcus sp. JA-3-3Ab YjgP/YjgQ family protein YP_475843.1 2466505 D 321327 CDS YP_475844.1 86607081 3898640 2467680..2471015 1 NC_007775.1 hypothetical protein 2471015 3898640 CYA_2459 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475844.1 2467680 D 321327 CDS YP_475845.1 86607082 3898641 2471113..2472348 1 NC_007775.1 catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis; L,L-diaminopimelate aminotransferase 2472348 3898641 CYA_2460 Synechococcus sp. JA-3-3Ab L,L-diaminopimelate aminotransferase YP_475845.1 2471113 D 321327 CDS YP_475846.1 86607083 3898642 2472469..2473437 1 NC_007775.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; oxidoreductase, NAD-binding 2473437 3898642 CYA_2461 Synechococcus sp. JA-3-3Ab oxidoreductase, NAD-binding YP_475846.1 2472469 D 321327 CDS YP_475847.1 86607084 3898214 complement(2473466..2474020) 1 NC_007775.1 identified by similarity to PIR:JC7085; iron-sulfur cluster-binding protein 2474020 3898214 CYA_2462 Synechococcus sp. JA-3-3Ab iron-sulfur cluster-binding protein YP_475847.1 2473466 R 321327 CDS YP_475848.1 86607085 3898215 complement(2474013..2474291) 1 NC_007775.1 identified by similarity to PIR:AB1982; hypothetical protein 2474291 3898215 CYA_2463 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475848.1 2474013 R 321327 CDS YP_475849.1 86607086 3898216 complement(2474426..2474977) 1 NC_007775.1 identified by similarity to SP:Q55024; match to protein family HMM PF00210; DNA protection protein 2474977 3898216 CYA_2464 Synechococcus sp. JA-3-3Ab DNA protection protein YP_475849.1 2474426 R 321327 CDS YP_475850.1 86607087 3898217 2475226..2476479 1 NC_007775.1 identified by match to protein family HMM PF01926; GTP-binding protein 2476479 3898217 CYA_2465 Synechococcus sp. JA-3-3Ab GTP-binding protein YP_475850.1 2475226 D 321327 CDS YP_475851.1 86607088 3898218 complement(2476487..2477509) 1 NC_007775.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 2477509 3898218 CYA_2466 Synechococcus sp. JA-3-3Ab glycosyl transferase family protein YP_475851.1 2476487 R 321327 CDS YP_475852.1 86607089 3898219 complement(2477559..2478521) 1 NC_007775.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 2478521 hslO 3898219 hslO Synechococcus sp. JA-3-3Ab Hsp33-like chaperonin YP_475852.1 2477559 R 321327 CDS YP_475853.1 86607090 3898220 2478895..2479182 1 NC_007775.1 hypothetical protein 2479182 3898220 CYA_2468 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475853.1 2478895 D 321327 CDS YP_475854.1 86607091 3898221 2479464..2479952 1 NC_007775.1 identified by match to protein family HMM PF01398; Mov34/MPN/PAD-1 family protein 2479952 3898221 CYA_2469 Synechococcus sp. JA-3-3Ab Mov34/MPN/PAD-1 family protein YP_475854.1 2479464 D 321327 CDS YP_475855.1 86607092 3898222 2480163..2480444 1 NC_007775.1 identified by match to protein family HMM PF02597; ThiS domain-containing protein 2480444 3898222 CYA_2470 Synechococcus sp. JA-3-3Ab ThiS domain-containing protein YP_475855.1 2480163 D 321327 CDS YP_475856.1 86607093 3898223 2480447..2481610 1 NC_007775.1 identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; hypothetical protein 2481610 3898223 CYA_2471 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475856.1 2480447 D 321327 CDS YP_475857.1 86607094 3898224 2481734..2483035 1 NC_007775.1 identified by similarity to SP:P17620; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00506; riboflavin biosynthesis protein RibA 2483035 ribAB 3898224 ribAB Synechococcus sp. JA-3-3Ab riboflavin biosynthesis protein RibA YP_475857.1 2481734 D 321327 CDS YP_475858.1 86607095 3898225 complement(2483024..2483449) 1 NC_007775.1 hypothetical protein 2483449 3898225 CYA_2472 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475858.1 2483024 R 321327 CDS YP_475859.1 86607096 3898226 complement(2483586..2484572) 1 NC_007775.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 2484572 3898226 CYA_2474 Synechococcus sp. JA-3-3Ab GntR family transcriptional regulator YP_475859.1 2483586 R 321327 CDS YP_475860.1 86607097 3898228 2486028..2486582 1 NC_007775.1 identified by match to protein family HMM PF07681; DoxX family protein 2486582 3898228 CYA_2476 Synechococcus sp. JA-3-3Ab DoxX family protein YP_475860.1 2486028 D 321327 CDS YP_475861.1 86607098 3898229 complement(2486621..2488672) 1 NC_007775.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2488672 ppk 3898229 ppk Synechococcus sp. JA-3-3Ab polyphosphate kinase YP_475861.1 2486621 R 321327 CDS YP_475862.1 86607099 3898230 complement(2488854..2489813) 1 NC_007775.1 identified by match to protein family HMM PF02653; hydrophobic amino acid ABC transporter permease 2489813 3898230 CYA_2478 Synechococcus sp. JA-3-3Ab hydrophobic amino acid ABC transporter permease YP_475862.1 2488854 R 321327 CDS YP_475863.1 86607100 3898231 complement(2489813..2490670) 1 NC_007775.1 identified by similarity to SP:P08340; match to protein family HMM PF02653; hydrophobic amino acid ABC transporter permease 2490670 3898231 CYA_2479 Synechococcus sp. JA-3-3Ab hydrophobic amino acid ABC transporter permease YP_475863.1 2489813 R 321327 CDS YP_475864.1 86607101 3898232 2490776..2491777 1 NC_007775.1 lipoprotein 2491777 3898232 CYA_2480 Synechococcus sp. JA-3-3Ab lipoprotein YP_475864.1 2490776 D 321327 CDS YP_475865.1 86607102 3898233 2491860..2493524 1 NC_007775.1 identified by similarity to GB:AAF72520.1; match to protein family HMM PF00884; sulfatase 2493524 3898233 CYA_2481 Synechococcus sp. JA-3-3Ab sulfatase YP_475865.1 2491860 D 321327 CDS YP_475866.1 86607103 3897711 complement(2493528..2494016) 1 NC_007775.1 hypothetical protein 2494016 3897711 CYA_2482 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475866.1 2493528 R 321327 CDS YP_475867.1 86607104 3897712 2494430..2495191 1 NC_007775.1 identified by match to protein family HMM PF00106; match to protein family HMM TIGR01830; 3-oxoacyl-(acyl-carrier-protein) reductase 2495191 fabG 3897712 fabG Synechococcus sp. JA-3-3Ab 3-oxoacyl-(acyl-carrier-protein) reductase YP_475867.1 2494430 D 321327 CDS YP_475868.1 86607105 3897713 complement(2495197..2496843) 1 NC_007775.1 identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066; gamma-glutamyltransferase 2496843 ggt 3897713 ggt Synechococcus sp. JA-3-3Ab gamma-glutamyltransferase YP_475868.1 2495197 R 321327 CDS YP_475869.1 86607106 3897714 complement(2496881..2497573) 1 NC_007775.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD family hydrolase 2497573 3897714 CYA_2485 Synechococcus sp. JA-3-3Ab HAD family hydrolase YP_475869.1 2496881 R 321327 CDS YP_475870.1 86607107 3897715 complement(2497673..2498335) 1 NC_007775.1 identified by similarity to PIR:AG2426; match to protein family HMM PF05728; hypothetical protein 2498335 3897715 CYA_2486 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475870.1 2497673 R 321327 CDS YP_475871.1 86607108 3897716 complement(2498350..2498589) 1 NC_007775.1 identified by similarity to SP:P33582; match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 2498589 secG 3897716 secG Synechococcus sp. JA-3-3Ab preprotein translocase subunit SecG YP_475871.1 2498350 R 321327 CDS YP_475872.1 86607109 3897717 2499093..2499383 1 NC_007775.1 hypothetical protein 2499383 3897717 CYA_2488 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475872.1 2499093 D 321327 CDS YP_475873.1 86607110 3897718 complement(2499425..2500210) 1 NC_007775.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2500210 panB 3897718 panB Synechococcus sp. JA-3-3Ab 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_475873.1 2499425 R 321327 CDS YP_475874.1 86607111 3897720 2500691..2501431 1 NC_007775.1 catalyzes the reduction of biliverdin IX-alpha producing (3Z)-phycocyanobilin and oxidized ferredoxin; phycocyanobilin:ferredoxin oxidoreductase 2501431 pcyA 3897720 pcyA Synechococcus sp. JA-3-3Ab phycocyanobilin:ferredoxin oxidoreductase YP_475874.1 2500691 D 321327 CDS YP_475875.1 86607112 3897721 complement(2501428..2502273) 1 NC_007775.1 hypothetical protein 2502273 3897721 CYA_2491 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475875.1 2501428 R 321327 CDS YP_475876.1 86607113 3897722 2502828..2503613 1 NC_007775.1 identified by match to protein family HMM PF01170; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM TIGR00406; 50S ribosomal protein L11 methyltransferase 2503613 prmA 3897722 prmA Synechococcus sp. JA-3-3Ab 50S ribosomal protein L11 methyltransferase YP_475876.1 2502828 D 321327 CDS YP_475877.1 86607114 3897723 2503583..2504401 1 NC_007775.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 2504401 3897723 CYA_2494 Synechococcus sp. JA-3-3Ab 16S ribosomal RNA methyltransferase RsmE YP_475877.1 2503583 D 321327 CDS YP_475878.1 86607115 3897724 2504482..2505741 1 NC_007775.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2505741 hisS 3897724 hisS Synechococcus sp. JA-3-3Ab histidyl-tRNA synthetase YP_475878.1 2504482 D 321327 CDS YP_475879.1 86607116 3897725 2505749..2507278 1 NC_007775.1 hypothetical protein 2507278 3897725 CYA_2496 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475879.1 2505749 D 321327 CDS YP_475880.1 86607117 3897726 complement(2507293..2508129) 1 NC_007775.1 identified by match to protein family HMM PF00582; universal stress protein 2508129 3897726 CYA_2497 Synechococcus sp. JA-3-3Ab universal stress protein YP_475880.1 2507293 R 321327 CDS YP_475881.1 86607118 3897727 complement(2508231..2509130) 1 NC_007775.1 hypothetical protein 2509130 3897727 CYA_2498 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475881.1 2508231 R 321327 CDS YP_475882.1 86607119 3897728 complement(2509159..2510295) 1 NC_007775.1 lipoprotein 2510295 3897728 CYA_2499 Synechococcus sp. JA-3-3Ab lipoprotein YP_475882.1 2509159 R 321327 CDS YP_475883.1 86607120 3897786 complement(2510292..2511791) 1 NC_007775.1 hypothetical protein 2511791 3897786 CYA_2500 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475883.1 2510292 R 321327 CDS YP_475884.1 86607121 3897787 2512198..2512599 1 NC_007775.1 identified by match to protein family HMM PF01050; match to protein family HMM PF07883; mannose-6-phosphate isomerase family protein 2512599 3897787 CYA_2501 Synechococcus sp. JA-3-3Ab mannose-6-phosphate isomerase family protein YP_475884.1 2512198 D 321327 CDS YP_475885.1 86607122 3897788 2512762..2514654 1 NC_007775.1 hypothetical protein 2514654 3897788 CYA_2502 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475885.1 2512762 D 321327 CDS YP_475886.1 86607123 3897789 2515200..2517008 1 NC_007775.1 identified by match to protein family HMM PF00535; match to protein family HMM PF05157; glycosyl transferase 2517008 3897789 CYA_2503 Synechococcus sp. JA-3-3Ab glycosyl transferase YP_475886.1 2515200 D 321327 CDS YP_475887.1 86607124 3897790 complement(2517066..2517425) 1 NC_007775.1 hypothetical protein 2517425 3897790 CYA_2504 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475887.1 2517066 R 321327 CDS YP_475888.1 86607125 3897791 2517430..2517528 1 NC_007775.1 hypothetical protein 2517528 3897791 CYA_2505 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475888.1 2517430 D 321327 CDS YP_475889.1 86607126 3897792 complement(2517680..2519407) 1 NC_007775.1 identified by match to protein family HMM PF00245; alkaline phosphatase 2519407 phoD 3897792 phoD Synechococcus sp. JA-3-3Ab alkaline phosphatase YP_475889.1 2517680 R 321327 CDS YP_475890.1 86607127 3897793 2519672..2519953 1 NC_007775.1 identified by match to protein family HMM PF02617; ATP-dependent Clp protease adaptor protein ClpS 2519953 clpS-2 3897793 clpS-2 Synechococcus sp. JA-3-3Ab ATP-dependent Clp protease adaptor protein ClpS YP_475890.1 2519672 D 321327 CDS YP_475891.1 86607128 3897794 2519969..2520763 1 NC_007775.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease family protein 2520763 3897794 CYA_2509 Synechococcus sp. JA-3-3Ab CAAX amino terminal protease family protein YP_475891.1 2519969 D 321327 CDS YP_475892.1 86607129 3897795 complement(2520713..2520823) 1 NC_007775.1 hypothetical protein 2520823 3897795 CYA_2508 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475892.1 2520713 R 321327 CDS YP_475893.1 86607130 3897796 complement(2520824..2522311) 1 NC_007775.1 identified by similarity to SP:P16256; match to protein family HMM PF00474; solute/sodium symporter (SSS) family protein 2522311 3897796 CYA_2510 Synechococcus sp. JA-3-3Ab solute/sodium symporter (SSS) family protein YP_475893.1 2520824 R 321327 CDS YP_475894.1 86607131 3897797 complement(2522304..2522534) 1 NC_007775.1 hypothetical protein 2522534 3897797 CYA_2511 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475894.1 2522304 R 321327 CDS YP_475895.1 86607132 3897798 2522681..2523826 1 NC_007775.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA 2523826 dprA 3897798 dprA Synechococcus sp. JA-3-3Ab DNA protecting protein DprA YP_475895.1 2522681 D 321327 CDS YP_475896.1 86607133 3897799 2524851..2525636 1 NC_007775.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2525636 hisA 3897799 hisA Synechococcus sp. JA-3-3Ab 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_475896.1 2524851 D 321327 CDS YP_475897.1 86607134 3897800 2526051..2527241 1 NC_007775.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; M20D family peptidase 2527241 3897800 CYA_2514 Synechococcus sp. JA-3-3Ab M20D family peptidase YP_475897.1 2526051 D 321327 CDS YP_475898.1 86607135 3897801 complement(2527385..2527972) 1 NC_007775.1 identified by similarity to PIR:AI2386; hypothetical protein 2527972 3897801 CYA_2515 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475898.1 2527385 R 321327 CDS YP_475899.1 86607136 3897802 complement(2528172..2529896) 1 NC_007775.1 identified by similarity to GB:BAC07803.1; match to protein family HMM PF01935; hypothetical protein 2529896 3897802 CYA_2516 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475899.1 2528172 R 321327 CDS YP_475900.1 86607137 3897803 complement(2529896..2530489) 1 NC_007775.1 hypothetical protein 2530489 3897803 CYA_2517 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475900.1 2529896 R 321327 CDS YP_475901.1 86607138 3897804 complement(2530486..2531679) 1 NC_007775.1 hypothetical protein 2531679 3897804 CYA_2518 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475901.1 2530486 R 321327 CDS YP_475902.1 86607139 3897805 complement(2531669..2535265) 1 NC_007775.1 identified by match to protein family HMM PF02463; RecF/RecN/SMC domain-containing protein 2535265 3897805 CYA_2519 Synechococcus sp. JA-3-3Ab RecF/RecN/SMC domain-containing protein YP_475902.1 2531669 R 321327 CDS YP_475903.1 86607140 3899949 complement(2535268..2536536) 1 NC_007775.1 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 2536536 3899949 CYA_2520 Synechococcus sp. JA-3-3Ab Ser/Thr protein phosphatase family protein YP_475903.1 2535268 R 321327 CDS YP_475904.1 86607141 3899950 2536947..2539214 1 NC_007775.1 with PsaB binds the primary electron donor of photosystem I, P700, and subsequent electron acceptors as part of photosystem I; photosystem I P700 chlorophyll a apoprotein A1 2539214 psaA 3899950 psaA Synechococcus sp. JA-3-3Ab photosystem I P700 chlorophyll a apoprotein A1 YP_475904.1 2536947 D 321327 CDS YP_475905.1 86607142 3899951 2539236..2541473 1 NC_007775.1 with PsaA binds the primary electron donor of photosystem I, P700, and subsequent electron acceptors as part of photosystem I; photosystem I P700 chlorophyll a apoprotein A2 2541473 psaB 3899951 psaB Synechococcus sp. JA-3-3Ab photosystem I P700 chlorophyll a apoprotein A2 YP_475905.1 2539236 D 321327 CDS YP_475906.1 86607143 3899952 complement(2541914..2543251) 1 NC_007775.1 hypothetical protein 2543251 3899952 CYA_2523 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475906.1 2541914 R 321327 CDS YP_475907.1 86607144 3899953 2543742..2544962 1 NC_007775.1 lipoprotein 2544962 3899953 CYA_2524 Synechococcus sp. JA-3-3Ab lipoprotein YP_475907.1 2543742 D 321327 CDS YP_475908.1 86607145 3899954 2545023..2546408 1 NC_007775.1 lipoprotein 2546408 3899954 CYA_2525 Synechococcus sp. JA-3-3Ab lipoprotein YP_475908.1 2545023 D 321327 CDS YP_475909.1 86607146 3899955 2546716..2546826 1 NC_007775.1 hypothetical protein 2546826 3899955 CYA_2526 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475909.1 2546716 D 321327 CDS YP_475910.1 86607147 3899956 complement(2546833..2548365) 1 NC_007775.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 2548365 3899956 CYA_2527 Synechococcus sp. JA-3-3Ab leucyl aminopeptidase YP_475910.1 2546833 R 321327 CDS YP_475911.1 86607148 3899957 2548375..2548476 1 NC_007775.1 hypothetical protein 2548476 3899957 CYA_2528 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475911.1 2548375 D 321327 CDS YP_475912.1 86607149 3899958 2548507..2549280 1 NC_007775.1 hypothetical protein 2549280 3899958 CYA_2530 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475912.1 2548507 D 321327 CDS YP_475913.1 86607150 3899959 complement(2549277..2550113) 1 NC_007775.1 identified by similarity to SP:P39832; match to protein family HMM PF00950; manganese/zinc/iron chelate ABC transporter permease 2550113 3899959 CYA_2529 Synechococcus sp. JA-3-3Ab manganese/zinc/iron chelate ABC transporter permease YP_475913.1 2549277 R 321327 CDS YP_475914.1 86607151 3899960 complement(2550123..2550893) 1 NC_007775.1 identified by similarity to SP:Q55281; match to protein family HMM PF00005; manganese/zinc/iron chelate ABC transporter ATP-binding protein 2550893 3899960 CYA_2531 Synechococcus sp. JA-3-3Ab manganese/zinc/iron chelate ABC transporter ATP-binding protein YP_475914.1 2550123 R 321327 CDS YP_475915.1 86607152 3899961 complement(2550890..2551981) 1 NC_007775.1 identified by similarity to PDB:1PQ4_A; match to protein family HMM PF01297; zinc ABC transporter, zinc-binding protein 2551981 3899961 CYA_2532 Synechococcus sp. JA-3-3Ab zinc ABC transporter, zinc-binding protein YP_475915.1 2550890 R 321327 CDS YP_475916.1 86607153 3899962 complement(2551995..2552438) 1 NC_007775.1 identified by match to protein family HMM PF02657; SufE family Fe-S metabolism protein 2552438 3899962 CYA_2533 Synechococcus sp. JA-3-3Ab SufE family Fe-S metabolism protein YP_475916.1 2551995 R 321327 CDS YP_475917.1 86607154 3899963 complement(2552549..2553688) 1 NC_007775.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase 2553688 3899963 CYA_2534 Synechococcus sp. JA-3-3Ab cyclopropane-fatty-acyl-phospholipid synthase YP_475917.1 2552549 R 321327 CDS YP_475918.1 86607155 3899964 2555487..2555579 1 NC_007775.1 hypothetical protein 2555579 3899964 CYA_2535 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475918.1 2555487 D 321327 CDS YP_475919.1 86607156 3899965 2555606..2556028 1 NC_007775.1 identified by similarity to GB:AAU90688.1; match to protein family HMM PF01951; hypothetical protein 2556028 3899965 CYA_2536 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475919.1 2555606 D 321327 CDS YP_475920.1 86607157 3899966 2556041..2557471 1 NC_007775.1 identified by similarity to GB:AAU90689.1; match to protein family HMM PF01139; hypothetical protein 2557471 3899966 CYA_2537 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475920.1 2556041 D 321327 CDS YP_475921.1 86607158 3899921 complement(2558326..2559216) 1 NC_007775.1 identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase 2559216 3899921 CYA_2538 Synechococcus sp. JA-3-3Ab 2OG-Fe(II) oxygenase YP_475921.1 2558326 R 321327 CDS YP_475922.1 86607159 3899922 complement(2559707..2559985) 1 NC_007775.1 identified by match to protein family HMM PF02647; match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein 2559985 cas2-4 3899922 cas2-4 Synechococcus sp. JA-3-3Ab CRISPR-associated Cas2 family protein YP_475922.1 2559707 R 321327 CDS YP_475923.1 86607160 3899924 complement(2560974..2561273) 1 NC_007775.1 hypothetical protein 2561273 3899924 CYA_2541 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475923.1 2560974 R 321327 CDS YP_475924.1 86607161 3899925 complement(2561306..2563264) 1 NC_007775.1 identified by match to protein family HMM PF03787; CRISPR-associated RAMP Cmr6 family protein 2563264 cmr6 3899925 cmr6 Synechococcus sp. JA-3-3Ab CRISPR-associated RAMP Cmr6 family protein YP_475924.1 2561306 R 321327 CDS YP_475925.1 86607162 3899926 complement(2563294..2563935) 1 NC_007775.1 identified by similarity to GB:BAC88877.1; match to protein family HMM PF05685; hypothetical protein 2563935 3899926 CYA_2543 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475925.1 2563294 R 321327 CDS YP_475926.1 86607163 3899927 complement(2563935..2564327) 1 NC_007775.1 identified by similarity to GB:BAD01988.1; hypothetical protein 2564327 3899927 CYA_2544 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475926.1 2563935 R 321327 CDS YP_475927.1 86607164 3899928 complement(2564341..2565111) 1 NC_007775.1 identified by match to protein family HMM PF03787; match to protein family HMM TIGR02580; CRISPR-associated RAMP Cmr4 family protein 2565111 cmr4 3899928 cmr4 Synechococcus sp. JA-3-3Ab CRISPR-associated RAMP Cmr4 family protein YP_475927.1 2564341 R 321327 CDS YP_475928.1 86607165 3899929 complement(2565157..2566281) 1 NC_007775.1 identified by similarity to GB:BAD01991.1; hypothetical protein 2566281 3899929 CYA_2546 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475928.1 2565157 R 321327 CDS YP_475929.1 86607166 3899882 complement(2566278..2569103) 1 NC_007775.1 identified by match to protein family HMM TIGR02577; CRISPR-associated RAMP Crm2 family protein 2569103 crm2-2 3899882 crm2-2 Synechococcus sp. JA-3-3Ab CRISPR-associated RAMP Crm2 family protein YP_475929.1 2566278 R 321327 CDS YP_475930.1 86607167 3899883 complement(2569518..2570837) 1 NC_007775.1 identified by match to protein family HMM TIGR02221; match to protein family HMM TIGR02549; CRISPR-associated TM1812 family protein 2570837 3899883 CYA_2548 Synechococcus sp. JA-3-3Ab CRISPR-associated TM1812 family protein YP_475930.1 2569518 R 321327 CDS YP_475931.1 86607168 3899884 2570815..2570973 1 NC_007775.1 hypothetical protein 2570973 3899884 CYA_2549 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475931.1 2570815 D 321327 CDS YP_475932.1 86607169 3899885 2571016..2571600 1 NC_007775.1 identified by similarity to PIR:S76377; match to protein family HMM PF05685; hypothetical protein 2571600 3899885 CYA_2550 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475932.1 2571016 D 321327 CDS YP_475933.1 86607170 3899886 2571628..2572236 1 NC_007775.1 identified by similarity to GB:BAC92021.1; match to protein family HMM PF05685; hypothetical protein 2572236 3899886 CYA_2551 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475933.1 2571628 D 321327 CDS YP_475934.1 86607171 3899887 2572193..2572879 1 NC_007775.1 hypothetical protein 2572879 3899887 CYA_2552 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475934.1 2572193 D 321327 CDS YP_475935.1 86607172 3899888 2573294..2576749 1 NC_007775.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 2576749 3899888 CYA_2553 Synechococcus sp. JA-3-3Ab sensory box histidine kinase YP_475935.1 2573294 D 321327 CDS YP_475936.1 86607173 3899889 2577070..2579121 1 NC_007775.1 identified by similarity to SP:Q06903; match to protein family HMM PF00326; match to protein family HMM PF02897; prolyl oligopeptidase 2579121 3899889 CYA_2555 Synechococcus sp. JA-3-3Ab prolyl oligopeptidase YP_475936.1 2577070 D 321327 CDS YP_475937.1 86607174 3899890 complement(2579118..2580416) 1 NC_007775.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 2580416 eno 3899890 eno Synechococcus sp. JA-3-3Ab phosphopyruvate hydratase YP_475937.1 2579118 R 321327 CDS YP_475938.1 86607175 3899891 2580599..2581003 1 NC_007775.1 identified by match to protein family HMM PF00582; universal stress protein 2581003 3899891 CYA_2556 Synechococcus sp. JA-3-3Ab universal stress protein YP_475938.1 2580599 D 321327 CDS YP_475939.1 86607176 3899892 2581160..2581519 1 NC_007775.1 identified by match to protein family HMM PF02943; ferredoxin-thioredoxin reductase, catalytic beta subunit 2581519 3899892 CYA_2557 Synechococcus sp. JA-3-3Ab ferredoxin-thioredoxin reductase, catalytic beta subunit YP_475939.1 2581160 D 321327 CDS YP_475940.1 86607177 3899893 2581637..2581753 1 NC_007775.1 identified by match to protein family HMM PF06596; photosystem II reaction center protein PsbX 2581753 psbX-1 3899893 psbX-1 Synechococcus sp. JA-3-3Ab photosystem II reaction center protein PsbX YP_475940.1 2581637 D 321327 CDS YP_475941.1 86607178 3899894 2581836..2583239 1 NC_007775.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 2583239 3899894 CYA_2559 Synechococcus sp. JA-3-3Ab glycosyl transferase family protein YP_475941.1 2581836 D 321327 CDS YP_475942.1 86607179 3899895 2583385..2584767 1 NC_007775.1 involved in light-induced Na+-dependent proton extrusion; proton extrusion protein PcxA 2584767 3899895 CYA_2560 Synechococcus sp. JA-3-3Ab proton extrusion protein PcxA YP_475942.1 2583385 D 321327 CDS YP_475943.1 86607180 3899896 2584772..2584924 1 NC_007775.1 hypothetical protein 2584924 3899896 CYA_2561 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475943.1 2584772 D 321327 CDS YP_475944.1 86607181 3899897 complement(2584940..2585527) 1 NC_007775.1 hypothetical protein 2585527 3899897 CYA_2562 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475944.1 2584940 R 321327 CDS YP_475945.1 86607182 3899898 complement(2585536..2587392) 1 NC_007775.1 identified by similarity to SP:P77338; match to protein family HMM PF00924; small conductance mechanosensitive ion channel (MscS) family protein 2587392 3899898 CYA_2563 Synechococcus sp. JA-3-3Ab small conductance mechanosensitive ion channel (MscS) family protein YP_475945.1 2585536 R 321327 CDS YP_475946.1 86607183 3899899 complement(2587475..2589562) 1 NC_007775.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2589562 uvrB 3899899 uvrB Synechococcus sp. JA-3-3Ab excinuclease ABC subunit B YP_475946.1 2587475 R 321327 CDS YP_475947.1 86607184 3899900 complement(2589764..2590624) 1 NC_007775.1 hypothetical protein 2590624 3899900 CYA_2565 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475947.1 2589764 R 321327 CDS YP_475948.1 86607185 3899901 complement(2590653..2591630) 1 NC_007775.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683; cobalamin biosynthesis protein CobW 2591630 3899901 CYA_2566 Synechococcus sp. JA-3-3Ab cobalamin biosynthesis protein CobW YP_475948.1 2590653 R 321327 CDS YP_475949.1 86607186 3899807 2591753..2591923 1 NC_007775.1 hypothetical protein 2591923 3899807 CYA_2567 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475949.1 2591753 D 321327 CDS YP_475950.1 86607187 3899808 complement(2592635..2593231) 1 NC_007775.1 identified by similarity to PIR:AC2473; match to protein family HMM PF06206; hypothetical protein 2593231 3899808 CYA_2568 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475950.1 2592635 R 321327 CDS YP_475951.1 86607188 3899809 2593699..2594769 1 NC_007775.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 2594769 3899809 CYA_2570 Synechococcus sp. JA-3-3Ab ribosomal RNA large subunit methyltransferase N YP_475951.1 2593699 D 321327 CDS YP_475952.1 86607189 3899810 complement(2594766..2597696) 1 NC_007775.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 2597696 3899810 CYA_2569 Synechococcus sp. JA-3-3Ab sensory box histidine kinase YP_475952.1 2594766 R 321327 CDS YP_475953.1 86607190 3899811 complement(2597704..2598345) 1 NC_007775.1 identified by similarity to SP:Q45461; match to protein family HMM PF00528; quaternary amine ABC transporter permease 2598345 3899811 CYA_2571 Synechococcus sp. JA-3-3Ab quaternary amine ABC transporter permease YP_475953.1 2597704 R 321327 CDS YP_475954.1 86607191 3899812 2598424..2599041 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 2599041 3899812 CYA_2572 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_475954.1 2598424 D 321327 CDS YP_475955.1 86607192 3899813 2598896..2600176 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 2600176 3899813 CYA_2573 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_475955.1 2598896 D 321327 CDS YP_475956.1 86607193 3899814 2600434..2600940 1 NC_007775.1 identified by similarity to PIR:H90201; hypothetical protein 2600940 3899814 CYA_2574 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475956.1 2600434 D 321327 CDS YP_475957.1 86607194 3899815 2600963..2602072 1 NC_007775.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 2602072 3899815 CYA_2575 Synechococcus sp. JA-3-3Ab sensor histidine kinase YP_475957.1 2600963 D 321327 CDS YP_475958.1 86607195 3899816 complement(2602150..2602755) 1 NC_007775.1 identified by match to protein family HMM PF00072; response regulator 2602755 3899816 CYA_2576 Synechococcus sp. JA-3-3Ab response regulator YP_475958.1 2602150 R 321327 CDS YP_475959.1 86607196 3899817 complement(2602994..2603335) 1 NC_007775.1 hypothetical protein 2603335 3899817 CYA_2577 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475959.1 2602994 R 321327 CDS YP_475960.1 86607197 3899818 complement(2603363..2603584) 1 NC_007775.1 hypothetical protein 2603584 3899818 CYA_2578 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475960.1 2603363 R 321327 CDS YP_475961.1 86607198 3899819 complement(2603693..2604097) 1 NC_007775.1 identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 2604097 3899819 CYA_2579 Synechococcus sp. JA-3-3Ab iron-sulfur cluster-binding protein YP_475961.1 2603693 R 321327 CDS YP_475962.1 86607199 3899820 complement(2604256..2604732) 1 NC_007775.1 identified by match to protein family HMM PF01797; ISSoc3, orfA transposase 2604732 3899820 CYA_2580 Synechococcus sp. JA-3-3Ab ISSoc3, orfA transposase YP_475962.1 2604256 R 321327 CDS YP_475963.1 86607200 3899821 2604688..2605959 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc3, orfB transposase 2605959 3899821 CYA_2581 Synechococcus sp. JA-3-3Ab ISSoc3, orfB transposase YP_475963.1 2604688 D 321327 CDS YP_475964.1 86607201 3899822 2606279..2608678 1 NC_007775.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 2608678 3899822 CYA_2582 Synechococcus sp. JA-3-3Ab recombination and DNA strand exchange inhibitor protein YP_475964.1 2606279 D 321327 CDS YP_475965.1 86607202 3899823 complement(2608723..2608920) 1 NC_007775.1 hypothetical protein 2608920 3899823 CYA_2583 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475965.1 2608723 R 321327 CDS YP_475966.1 86607203 3899824 complement(2608814..2609137) 1 NC_007775.1 hypothetical protein 2609137 3899824 CYA_2584 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475966.1 2608814 R 321327 CDS YP_475967.1 86607204 3899825 complement(2609202..2609414) 1 NC_007775.1 identified by similarity to SP:Q07398; urease subunit beta, truncation 2609414 3899825 CYA_2585 Synechococcus sp. JA-3-3Ab urease subunit beta, truncation YP_475967.1 2609202 R 321327 CDS YP_475968.1 86607205 3899749 2610755..2611231 1 NC_007775.1 identified by match to protein family HMM PF01797; ISSoc3, orfA transposase 2611231 3899749 CYA_2587 Synechococcus sp. JA-3-3Ab ISSoc3, orfA transposase YP_475968.1 2610755 D 321327 CDS YP_475969.1 86607206 3899751 complement(2611714..2611854) 1 NC_007775.1 hypothetical protein 2611854 3899751 CYA_2589 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475969.1 2611714 R 321327 CDS YP_475970.1 86607207 3899752 2611973..2613151 1 NC_007775.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 2613151 hrcA 3899752 hrcA Synechococcus sp. JA-3-3Ab heat-inducible transcription repressor YP_475970.1 2611973 D 321327 CDS YP_475971.1 86607208 3899753 2613192..2614202 1 NC_007775.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; tRNA(Ile)-lysidine synthetase 2614202 tilS 3899753 tilS Synechococcus sp. JA-3-3Ab tRNA(Ile)-lysidine synthetase YP_475971.1 2613192 D 321327 CDS YP_475972.1 86607209 3899754 complement(2614376..2615212) 1 NC_007775.1 identified by match to protein family HMM TIGR02669; SpoIID/LytB domain-containing protein 2615212 3899754 CYA_2592 Synechococcus sp. JA-3-3Ab SpoIID/LytB domain-containing protein YP_475972.1 2614376 R 321327 CDS YP_475973.1 86607210 3899755 complement(2615291..2616580) 1 NC_007775.1 identified by match to protein family HMM PF07690; drug:H+ antiporter-1 family protein 2616580 3899755 CYA_2593 Synechococcus sp. JA-3-3Ab drug:H+ antiporter-1 family protein YP_475973.1 2615291 R 321327 CDS YP_475974.1 86607211 3899756 2616763..2617065 1 NC_007775.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 2617065 3899756 CYA_2594 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475974.1 2616763 D 321327 CDS YP_475975.1 86607212 3899757 complement(2617089..2617463) 1 NC_007775.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 2617463 3899757 CYA_2595 Synechococcus sp. JA-3-3Ab endoribonuclease L-PSP YP_475975.1 2617089 R 321327 CDS YP_475976.1 86607213 3899758 2617489..2617641 1 NC_007775.1 hypothetical protein 2617641 3899758 CYA_2596 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475976.1 2617489 D 321327 CDS YP_475977.1 86607214 3899759 2617632..2617844 1 NC_007775.1 identified by similarity to GB:CAE20678.1; hypothetical protein 2617844 3899759 CYA_2597 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475977.1 2617632 D 321327 CDS YP_475978.1 86607215 3899761 complement(2619075..2619194) 1 NC_007775.1 hypothetical protein 2619194 3899761 CYA_2599 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475978.1 2619075 R 321327 CDS YP_475979.1 86607216 3899762 complement(2619212..2619328) 1 NC_007775.1 identified by match to protein family HMM PF06596; photosystem II reaction center protein PsbX 2619328 psbX-2 3899762 psbX-2 Synechococcus sp. JA-3-3Ab photosystem II reaction center protein PsbX YP_475979.1 2619212 R 321327 CDS YP_475980.1 86607217 3899763 complement(2619425..2619778) 1 NC_007775.1 identified by match to protein family HMM PF02943; ferredoxin-thioredoxin reductase, catalytic beta subunit 2619778 3899763 CYA_2601 Synechococcus sp. JA-3-3Ab ferredoxin-thioredoxin reductase, catalytic beta subunit YP_475980.1 2619425 R 321327 CDS YP_475981.1 86607218 3899765 complement(2620696..2621439) 1 NC_007775.1 identified by similarity to SP:P73883; hypothetical protein 2621439 3899765 CYA_2603 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475981.1 2620696 R 321327 CDS YP_475982.1 86607219 3899766 complement(2621611..2623191) 1 NC_007775.1 identified by match to protein family HMM PF00421; match to protein family HMM PF02605; PsbB/PsbC family photosystem II protein 2623191 3899766 CYA_2604 Synechococcus sp. JA-3-3Ab PsbB/PsbC family photosystem II protein YP_475982.1 2621611 R 321327 CDS YP_475983.1 86607220 3899767 complement(2623240..2623749) 1 NC_007775.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 2623749 3899767 CYA_2605 Synechococcus sp. JA-3-3Ab flavodoxin FldA YP_475983.1 2623240 R 321327 CDS YP_475984.1 86607221 3899671 complement(2623806..2624840) 1 NC_007775.1 identified by similarity to SP:P48187; match to protein family HMM PF00421; PsbB/PsbC family photosystem II protein 2624840 3899671 CYA_2606 Synechococcus sp. JA-3-3Ab PsbB/PsbC family photosystem II protein YP_475984.1 2623806 R 321327 CDS YP_475985.1 86607222 3899672 complement(2625026..2625205) 1 NC_007775.1 hypothetical protein 2625205 3899672 CYA_2607 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475985.1 2625026 R 321327 CDS YP_475986.1 86607223 3899673 2625231..2626463 1 NC_007775.1 identified by similarity to SP:P12608; iron-regulated protein A 2626463 3899673 CYA_2608 Synechococcus sp. JA-3-3Ab iron-regulated protein A YP_475986.1 2625231 D 321327 CDS YP_475988.1 86607225 3899676 2627221..2628156 1 NC_007775.1 identified by match to protein family HMM PF06537; hypothetical protein 2628156 3899676 CYA_2612 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475988.1 2627221 D 321327 CDS YP_475989.1 86607226 3899677 complement(2628153..2628827) 1 NC_007775.1 identified by match to protein family HMM PF03171; hydroxylase 2628827 3899677 CYA_2611 Synechococcus sp. JA-3-3Ab hydroxylase YP_475989.1 2628153 R 321327 CDS YP_475990.1 86607227 3899678 2629189..2629848 1 NC_007775.1 hypothetical protein 2629848 3899678 CYA_2613 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475990.1 2629189 D 321327 CDS YP_475991.1 86607228 3899679 complement(2630177..2630953) 1 NC_007775.1 hypothetical protein 2630953 3899679 CYA_2614 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475991.1 2630177 R 321327 CDS YP_475992.1 86607229 3899680 complement(2631196..2631858) 1 NC_007775.1 identified by similarity to PIR:AC2428; hypothetical protein 2631858 3899680 CYA_2615 Synechococcus sp. JA-3-3Ab hypothetical protein YP_475992.1 2631196 R 321327 CDS YP_475993.1 86607230 3899681 2632185..2633936 1 NC_007775.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 2633936 mutL 3899681 mutL Synechococcus sp. JA-3-3Ab DNA mismatch repair protein YP_475993.1 2632185 D 321327 CDS YP_475994.1 86607231 3899682 2633965..2634822 1 NC_007775.1 identified by match to protein family HMM PF07884; VKORC1/thioredoxin domain-containing protein 2634822 3899682 CYA_2617 Synechococcus sp. JA-3-3Ab VKORC1/thioredoxin domain-containing protein YP_475994.1 2633965 D 321327 CDS YP_475995.1 86607232 3899683 complement(2635110..2636108) 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator 2636108 3899683 CYA_2618 Synechococcus sp. JA-3-3Ab response regulator YP_475995.1 2635110 R 321327 CDS YP_475996.1 86607233 3899684 complement(2636271..2637158) 1 NC_007775.1 identified by similarity to SP:P72966; match to protein family HMM PF03437; match to protein family HMM TIGR00259; photosystem I biogenesis protein BtpA 2637158 btpA 3899684 btpA Synechococcus sp. JA-3-3Ab photosystem I biogenesis protein BtpA YP_475996.1 2636271 R 321327 CDS YP_475997.1 86607234 3899685 complement(2637171..2638301) 1 NC_007775.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2638301 pyrD 3899685 pyrD Synechococcus sp. JA-3-3Ab dihydroorotate dehydrogenase 2 YP_475997.1 2637171 R 321327 CDS YP_475998.1 86607235 3899686 complement(2638449..2639702) 1 NC_007775.1 identified by similarity to SP:P21175; match to protein family HMM PF01094; match to protein family HMM TIGR01409; hydrophobic amino acid ABC transporter amino acid-binding protein 2639702 3899686 CYA_2621 Synechococcus sp. JA-3-3Ab hydrophobic amino acid ABC transporter amino acid-binding protein YP_475998.1 2638449 R 321327 CDS YP_475999.1 86607236 3899687 2639930..2640748 1 NC_007775.1 identified by match to protein family HMM PF00005; hydrophobic amino acid ABC transporter ATP-binding protein 2640748 3899687 CYA_2622 Synechococcus sp. JA-3-3Ab hydrophobic amino acid ABC transporter ATP-binding protein YP_475999.1 2639930 D 321327 CDS YP_476000.1 86607237 3899688 2640745..2641452 1 NC_007775.1 identified by match to protein family HMM PF00005; hydrophobic amino acid ABC transporter ATP-binding protein 2641452 3899688 CYA_2623 Synechococcus sp. JA-3-3Ab hydrophobic amino acid ABC transporter ATP-binding protein YP_476000.1 2640745 D 321327 CDS YP_476001.1 86607238 3899689 complement(2641479..2643185) 1 NC_007775.1 identified by match to protein family HMM TIGR00634; DNA repair protein RecN 2643185 recN 3899689 recN Synechococcus sp. JA-3-3Ab DNA repair protein RecN YP_476001.1 2641479 R 321327 CDS YP_476002.1 86607239 3899615 complement(2643258..2643572) 1 NC_007775.1 hypothetical protein 2643572 3899615 CYA_2625 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476002.1 2643258 R 321327 CDS YP_476003.1 86607240 3899616 2643684..2644310 1 NC_007775.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093; RNA pseudouridine synthase family protein 2644310 3899616 CYA_2627 Synechococcus sp. JA-3-3Ab RNA pseudouridine synthase family protein YP_476003.1 2643684 D 321327 CDS YP_476004.1 86607241 3899617 complement(2644293..2644913) 1 NC_007775.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 2644913 hisB 3899617 hisB Synechococcus sp. JA-3-3Ab imidazoleglycerol-phosphate dehydratase YP_476004.1 2644293 R 321327 CDS YP_476005.1 86607242 3899618 2645144..2646559 1 NC_007775.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614; ATP-dependent DNA helicase RecQ 2646559 3899618 CYA_2628 Synechococcus sp. JA-3-3Ab ATP-dependent DNA helicase RecQ YP_476005.1 2645144 D 321327 CDS YP_476006.1 86607243 3899619 2646700..2648472 1 NC_007775.1 identified by match to protein family HMM PF00933; glycosyl hydrolase domain-containing protein 2648472 3899619 CYA_2629 Synechococcus sp. JA-3-3Ab glycosyl hydrolase domain-containing protein YP_476006.1 2646700 D 321327 CDS YP_476007.1 86607244 3899620 2648737..2649054 1 NC_007775.1 identified by match to protein family HMM PF00034; cytochrome c family protein 2649054 3899620 CYA_2630 Synechococcus sp. JA-3-3Ab cytochrome c family protein YP_476007.1 2648737 D 321327 CDS YP_476008.1 86607245 3899621 2649064..2649741 1 NC_007775.1 identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 2649741 3899621 CYA_2631 Synechococcus sp. JA-3-3Ab phosphatidate cytidylyltransferase YP_476008.1 2649064 D 321327 CDS YP_476009.1 86607246 3899622 complement(2649785..2650144) 1 NC_007775.1 hypothetical protein 2650144 3899622 CYA_2632 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476009.1 2649785 R 321327 CDS YP_476010.1 86607247 3899623 complement(2650477..2650803) 1 NC_007775.1 identified by similarity to SP:P06966; DNA-binding protein 2650803 3899623 CYA_2633 Synechococcus sp. JA-3-3Ab DNA-binding protein YP_476010.1 2650477 R 321327 CDS YP_476011.1 86607248 3899624 complement(2650912..2651022) 1 NC_007775.1 hypothetical protein 2651022 3899624 CYA_2634 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476011.1 2650912 R 321327 CDS YP_476012.1 86607249 3899625 2651108..2652193 1 NC_007775.1 identified by similarity to PIR:S70834; match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02393; RNA polymerase sigma factor, group 1 2652193 3899625 CYA_2635 Synechococcus sp. JA-3-3Ab RNA polymerase sigma factor, group 1 YP_476012.1 2651108 D 321327 CDS YP_476013.1 86607250 3899626 complement(2652298..2653569) 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc3, orfB transposase 2653569 3899626 CYA_2636 Synechococcus sp. JA-3-3Ab ISSoc3, orfB transposase YP_476013.1 2652298 R 321327 CDS YP_529504.1 90296797 3899627 2653525..2653755 1 NC_007775.1 This gene is disrupted by an insertion of an ISSoc4 element.; ISSoc3, orfA transposase, interruption-N 2653755 3899627 CYA_2638 Synechococcus sp. JA-3-3Ab ISSoc3, orfA transposase, interruption-N YP_529504.1 2653525 D 321327 CDS YP_476014.1 86607251 3899628 complement(2653693..2654259) 1 NC_007775.1 identified by similarity to GB:AAC97587.1; ISSoc4, transposase orfB 2654259 3899628 CYA_2637 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfB YP_476014.1 2653693 R 321327 CDS YP_476015.1 86607252 3899629 complement(2654241..2654639) 1 NC_007775.1 identified by similarity to PIR:AD2038; ISSoc4, transposase orfA 2654639 3899629 CYA_2639 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfA YP_476015.1 2654241 R 321327 CDS YP_529505.1 90296798 3969018 2654705..2655019 1 NC_007775.1 This gene is disrupted by an insertion of an ISSoc4 element.; identified by match to protein family HMM PF01797; ISSoc3, orfA transposase, interruption-C 2655019 3969018 CYA_2640 Synechococcus sp. JA-3-3Ab ISSoc3, orfA transposase, interruption-C YP_529505.1 2654705 D 321327 CDS YP_476017.1 86607254 3899631 complement(2656899..2658311) 1 NC_007775.1 identified by match to protein family HMM PF03092; match to protein family HMM PF07690; match to protein family HMM TIGR00788; folate-biopterin transporter (FBT) family protein 2658311 3899631 CYA_2642 Synechococcus sp. JA-3-3Ab folate-biopterin transporter (FBT) family protein YP_476017.1 2656899 R 321327 CDS YP_476018.1 86607255 3899632 2658593..2659321 1 NC_007775.1 identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966; ribonuclease PH 2659321 rph 3899632 rph Synechococcus sp. JA-3-3Ab ribonuclease PH YP_476018.1 2658593 D 321327 CDS YP_476019.1 86607256 3899633 2659824..2661062 1 NC_007775.1 identified by match to protein family HMM PF00072; response regulator 2661062 3899633 CYA_2644 Synechococcus sp. JA-3-3Ab response regulator YP_476019.1 2659824 D 321327 CDS YP_476020.1 86607257 3899634 2661088..2661723 1 NC_007775.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2661723 ribE 3899634 ribE Synechococcus sp. JA-3-3Ab riboflavin synthase subunit alpha YP_476020.1 2661088 D 321327 CDS YP_476021.1 86607258 3899577 2661750..2662319 1 NC_007775.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 2662319 aroK 3899577 aroK Synechococcus sp. JA-3-3Ab shikimate kinase YP_476021.1 2661750 D 321327 CDS YP_476022.1 86607259 3899578 complement(2662397..2663455) 1 NC_007775.1 identified by match to protein family HMM PF00124; match to protein family HMM TIGR01152; photosystem II protein D2 2663455 psbD-2 3899578 psbD-2 Synechococcus sp. JA-3-3Ab photosystem II protein D2 YP_476022.1 2662397 R 321327 CDS YP_476023.1 86607260 3899579 2663700..2665154 1 NC_007775.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 2665154 glgA 3899579 glgA Synechococcus sp. JA-3-3Ab glycogen synthase YP_476023.1 2663700 D 321327 CDS YP_476024.1 86607261 3899580 2665281..2665898 1 NC_007775.1 hypothetical protein 2665898 3899580 CYA_2650 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476024.1 2665281 D 321327 CDS YP_476025.1 86607262 3899581 complement(2665895..2666446) 1 NC_007775.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; methyltransferase 2666446 3899581 CYA_2649 Synechococcus sp. JA-3-3Ab methyltransferase YP_476025.1 2665895 R 321327 CDS YP_476026.1 86607263 3899582 complement(2666452..2667342) 1 NC_007775.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 2667342 3899582 CYA_2651 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476026.1 2666452 R 321327 CDS YP_476027.1 86607264 3899583 complement(2667403..2668245) 1 NC_007775.1 identified by match to protein family HMM PF02985; match to protein family HMM PF03130; HEAT repeat-containing PBS lyase 2668245 3899583 CYA_2652 Synechococcus sp. JA-3-3Ab HEAT repeat-containing PBS lyase YP_476027.1 2667403 R 321327 CDS YP_476028.1 86607265 3899584 complement(2668683..2671094) 1 NC_007775.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM PF08148; DEAD/DEAH box helicase 2671094 3899584 CYA_2653 Synechococcus sp. JA-3-3Ab DEAD/DEAH box helicase YP_476028.1 2668683 R 321327 CDS YP_476029.1 86607266 3899585 2671274..2671909 1 NC_007775.1 identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566; anthranilate synthase component II 2671909 trpG 3899585 trpG Synechococcus sp. JA-3-3Ab anthranilate synthase component II YP_476029.1 2671274 D 321327 CDS YP_476030.1 86607267 3899586 2671900..2672670 1 NC_007775.1 metallo-beta-lactamase superfamily hydrolase 2672670 3899586 CYA_2655 Synechococcus sp. JA-3-3Ab metallo-beta-lactamase superfamily hydrolase YP_476030.1 2671900 D 321327 CDS YP_476031.1 86607268 3899587 2672675..2673235 1 NC_007775.1 identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 2673235 3899587 CYA_2656 Synechococcus sp. JA-3-3Ab ankyrin repeat-containing protein YP_476031.1 2672675 D 321327 CDS YP_476032.1 86607269 3899588 complement(2673243..2674238) 1 NC_007775.1 Hypusine is a modified amino acid found in eukarya and archaea, but as yet unknown in prokarya.; identified by match to protein family HMM PF01916; deoxyhypusine synthase family protein 2674238 3899588 CYA_2657 Synechococcus sp. JA-3-3Ab deoxyhypusine synthase family protein YP_476032.1 2673243 R 321327 CDS YP_476033.1 86607270 3899589 2674363..2675295 1 NC_007775.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase 2675295 bioB 3899589 bioB Synechococcus sp. JA-3-3Ab biotin synthase YP_476033.1 2674363 D 321327 CDS YP_476034.1 86607271 3899590 2675506..2677509 1 NC_007775.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 2677509 3899590 CYA_2659 Synechococcus sp. JA-3-3Ab sensory box histidine kinase YP_476034.1 2675506 D 321327 CDS YP_476035.1 86607272 3899591 2677542..2678036 1 NC_007775.1 hypothetical protein 2678036 3899591 CYA_2660 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476035.1 2677542 D 321327 CDS YP_476036.1 86607273 3899592 2677850..2678146 1 NC_007775.1 hypothetical protein 2678146 3899592 CYA_2661 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476036.1 2677850 D 321327 CDS YP_476037.1 86607274 3899593 complement(2678156..2679193) 1 NC_007775.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; hypothetical protein 2679193 3899593 CYA_2662 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476037.1 2678156 R 321327 CDS YP_476038.1 86607275 3899594 complement(2679390..2681012) 1 NC_007775.1 catalyzes the formation of pantothenate from pantoate and beta-alanine and the formation of cytidine diphosphate from cytidine monophosphate; bifunctional pantoate ligase/cytidylate kinase 2681012 panC/cmk 3899594 panC/cmk Synechococcus sp. JA-3-3Ab bifunctional pantoate ligase/cytidylate kinase YP_476038.1 2679390 R 321327 CDS YP_476039.1 86607276 3899595 complement(2681084..2681197) 1 NC_007775.1 cytochrome b6-f complex subunit 5; plastohydroquinone/plastocyanin oxidoreductase; with PetL, PetM and PetN makes up the small subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I; cytochrome b6-f complex subunit PetG 2681197 petG 3899595 petG Synechococcus sp. JA-3-3Ab cytochrome b6-f complex subunit PetG YP_476039.1 2681084 R 321327 CDS YP_476040.1 86607277 3899522 2681420..2682826 1 NC_007775.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR01923; O-succinylbenzoic acid--CoA ligase 2682826 menE 3899522 menE Synechococcus sp. JA-3-3Ab O-succinylbenzoic acid--CoA ligase YP_476040.1 2681420 D 321327 CDS YP_476041.1 86607278 3899523 complement(2682823..2683404) 1 NC_007775.1 identified by match to protein family HMM PF00226; match to protein family HMM PF07719; DnaJ domain-containing protein 2683404 3899523 CYA_2665 Synechococcus sp. JA-3-3Ab DnaJ domain-containing protein YP_476041.1 2682823 R 321327 CDS YP_476042.1 86607279 3899524 2683755..2684510 1 NC_007775.1 identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 2684510 3899524 CYA_2667 Synechococcus sp. JA-3-3Ab ankyrin repeat-containing protein YP_476042.1 2683755 D 321327 CDS YP_476043.1 86607280 3899525 2685242..2685592 1 NC_007775.1 hypothetical protein 2685592 3899525 CYA_2668 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476043.1 2685242 D 321327 CDS YP_476044.1 86607281 3899526 complement(2685650..2685847) 1 NC_007775.1 hypothetical protein 2685847 3899526 CYA_2669 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476044.1 2685650 R 321327 CDS YP_476045.1 86607282 3899527 2685875..2686795 1 NC_007775.1 identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771; L-lactate dehydrogenase 2686795 3899527 CYA_2670 Synechococcus sp. JA-3-3Ab L-lactate dehydrogenase YP_476045.1 2685875 D 321327 CDS YP_476046.1 86607283 3899528 2686875..2687585 1 NC_007775.1 identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091; tRNA (guanine-N(7)-)-methyltransferase 2687585 trmB 3899528 trmB Synechococcus sp. JA-3-3Ab tRNA (guanine-N(7)-)-methyltransferase YP_476046.1 2686875 D 321327 CDS YP_476047.1 86607284 3899529 2687653..2689266 1 NC_007775.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease family protein 2689266 3899529 CYA_2672 Synechococcus sp. JA-3-3Ab CAAX amino terminal protease family protein YP_476047.1 2687653 D 321327 CDS YP_476048.1 86607285 3899530 complement(2689279..2690304) 1 NC_007775.1 identified by match to protein family HMM PF00226; match to protein family HMM PF07719; DnaJ domain-containing protein 2690304 3899530 CYA_2673 Synechococcus sp. JA-3-3Ab DnaJ domain-containing protein YP_476048.1 2689279 R 321327 CDS YP_476049.1 86607286 3899531 complement(2690262..2691098) 1 NC_007775.1 identified by similarity to SP:P02911; match to protein family HMM PF00497; polar amino acid ABC transporter (PAAT) family, amino acid-binding protein 2691098 3899531 CYA_2674 Synechococcus sp. JA-3-3Ab polar amino acid ABC transporter (PAAT) family, amino acid-binding protein YP_476049.1 2690262 R 321327 CDS YP_476050.1 86607287 3899532 complement(2691230..2692081) 1 NC_007775.1 identified by match to protein family HMM PF00459; inositol monophosphatase family protein 2692081 3899532 CYA_2675 Synechococcus sp. JA-3-3Ab inositol monophosphatase family protein YP_476050.1 2691230 R 321327 CDS YP_476051.1 86607288 3899533 2692424..2693002 1 NC_007775.1 identified by match to protein family HMM PF00498; FHA domain-containing protein 2693002 3899533 CYA_2676 Synechococcus sp. JA-3-3Ab FHA domain-containing protein YP_476051.1 2692424 D 321327 CDS YP_476052.1 86607289 3899535 2693306..2694793 1 NC_007775.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 2694793 cobQ 3899535 cobQ Synechococcus sp. JA-3-3Ab cobyric acid synthase YP_476052.1 2693306 D 321327 CDS YP_476053.1 86607290 3899536 2694862..2695872 1 NC_007775.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 2695872 galE 3899536 galE Synechococcus sp. JA-3-3Ab UDP-glucose 4-epimerase YP_476053.1 2694862 D 321327 CDS YP_476054.1 86607291 3899537 2695944..2696279 1 NC_007775.1 identified by similarity to SP:P36654; match to protein family HMM PF03091; divalent-cation tolerance protein CutA 2696279 cutA 3899537 cutA Synechococcus sp. JA-3-3Ab divalent-cation tolerance protein CutA YP_476054.1 2695944 D 321327 CDS YP_476055.1 86607292 3899538 2696302..2696781 1 NC_007775.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 2696781 coaD 3899538 coaD Synechococcus sp. JA-3-3Ab phosphopantetheine adenylyltransferase YP_476055.1 2696302 D 321327 CDS YP_476056.1 86607293 3899539 complement(2696798..2697196) 1 NC_007775.1 identified by similarity to PIR:S75155; hypothetical protein 2697196 3899539 CYA_2682 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476056.1 2696798 R 321327 CDS YP_476057.1 86607294 3899540 2697360..2698538 1 NC_007775.1 identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345; arsenite-antimonite transporter ArsAB 2698538 3899540 CYA_2683 Synechococcus sp. JA-3-3Ab arsenite-antimonite transporter ArsAB YP_476057.1 2697360 D 321327 CDS YP_476058.1 86607295 3899446 2698806..2699423 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 2699423 3899446 CYA_2684 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_476058.1 2698806 D 321327 CDS YP_476059.1 86607296 3899447 2699278..2700558 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 2700558 3899447 CYA_2685 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_476059.1 2699278 D 321327 CDS YP_476060.1 86607297 3899448 2700632..2701987 1 NC_007775.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 2701987 gid 3899448 gid Synechococcus sp. JA-3-3Ab tRNA (uracil-5-)-methyltransferase Gid YP_476060.1 2700632 D 321327 CDS YP_476061.1 86607298 3899450 2703599..2704810 1 NC_007775.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2704810 ackA 3899450 ackA Synechococcus sp. JA-3-3Ab acetate kinase YP_476061.1 2703599 D 321327 CDS YP_476062.1 86607299 3899451 2704985..2705455 1 NC_007775.1 hypothetical protein 2705455 3899451 CYA_2689 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476062.1 2704985 D 321327 CDS YP_476063.1 86607300 3899452 2705996..2706538 1 NC_007775.1 identified by match to protein family HMM PF00498; FHA domain-containing protein 2706538 3899452 CYA_2690 Synechococcus sp. JA-3-3Ab FHA domain-containing protein YP_476063.1 2705996 D 321327 CDS YP_476064.1 86607301 3899453 complement(2706562..2706690) 1 NC_007775.1 hypothetical protein 2706690 3899453 CYA_2691 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476064.1 2706562 R 321327 CDS YP_476065.1 86607302 3899454 2706717..2708738 1 NC_007775.1 identified by match to protein family HMM PF00498; FHA domain-containing protein 2708738 3899454 CYA_2692 Synechococcus sp. JA-3-3Ab FHA domain-containing protein YP_476065.1 2706717 D 321327 CDS YP_476066.1 86607303 3899455 2708985..2709437 1 NC_007775.1 identified by similarity to PIR:AD2030; hypothetical protein 2709437 3899455 CYA_2693 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476066.1 2708985 D 321327 CDS YP_476067.1 86607304 3899456 2709546..2710163 1 NC_007775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 2710163 3899456 CYA_2694 Synechococcus sp. JA-3-3Ab ISSoc2, resolvase YP_476067.1 2709546 D 321327 CDS YP_476068.1 86607305 3899457 2710018..2711283 1 NC_007775.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 2711283 3899457 CYA_2695 Synechococcus sp. JA-3-3Ab ISSoc2, transposase YP_476068.1 2710018 D 321327 CDS YP_476069.1 86607306 3899458 2711745..2712014 1 NC_007775.1 identified by similarity to SP:Q8Z0I8; match to protein family HMM PF04025; hypothetical protein 2712014 3899458 CYA_2696 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476069.1 2711745 D 321327 CDS YP_476070.1 86607307 3899459 2712109..2712762 1 NC_007775.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 2712762 gmk 3899459 gmk Synechococcus sp. JA-3-3Ab guanylate kinase YP_476070.1 2712109 D 321327 CDS YP_476071.1 86607308 3899461 2714420..2715112 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2715112 3899461 CYA_2699 Synechococcus sp. JA-3-3Ab DNA-binding response regulator YP_476071.1 2714420 D 321327 CDS YP_476072.1 86607309 3899462 2715285..2716424 1 NC_007775.1 identified by similarity to SP:O34752; match to protein family HMM PF01790; match to protein family HMM TIGR00544; prolipoprotein diacylglyceryl transferase 2716424 lgt-2 3899462 lgt-2 Synechococcus sp. JA-3-3Ab prolipoprotein diacylglyceryl transferase YP_476072.1 2715285 D 321327 CDS YP_476073.1 86607310 3899464 complement(2718426..2719907) 1 NC_007775.1 identified by match to protein family HMM PF02163; M50 family peptidase 2719907 3899464 CYA_2702 Synechococcus sp. JA-3-3Ab M50 family peptidase YP_476073.1 2718426 R 321327 CDS YP_476074.1 86607311 3899354 complement(2719954..2721045) 1 NC_007775.1 oxidative; catalyzes the formation of divinylprotochlorophyllide from magnesium-protoporphyrin IX 13-monomethyl ester in isocyclic ring formation in chlorophyll biosynthesis; magnesium-protoporphyrin IX monomethyl ester cyclase 2721045 acsF 3899354 acsF Synechococcus sp. JA-3-3Ab magnesium-protoporphyrin IX monomethyl ester cyclase YP_476074.1 2719954 R 321327 CDS YP_476075.1 86607312 3899355 complement(2721145..2725752) 1 NC_007775.1 identified by similarity to SP:P55038; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898; ferredoxin-dependent glutamate synthase 2725752 gltS 3899355 gltS Synechococcus sp. JA-3-3Ab ferredoxin-dependent glutamate synthase YP_476075.1 2721145 R 321327 CDS YP_476076.1 86607313 3899356 complement(2725833..2725967) 1 NC_007775.1 hypothetical protein 2725967 3899356 CYA_2705 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476076.1 2725833 R 321327 CDS YP_476077.1 86607314 3899357 complement(2726041..2726886) 1 NC_007775.1 hypothetical protein 2726886 3899357 CYA_2706 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476077.1 2726041 R 321327 CDS YP_476078.1 86607315 3899358 2727113..2727310 1 NC_007775.1 hypothetical protein 2727310 3899358 CYA_2707 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476078.1 2727113 D 321327 CDS YP_476079.1 86607316 3899359 2727385..2728404 1 NC_007775.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01188; drug exporter ABC transporter ATP-binding protein 2728404 3899359 CYA_2708 Synechococcus sp. JA-3-3Ab drug exporter ABC transporter ATP-binding protein YP_476079.1 2727385 D 321327 CDS YP_476080.1 86607317 3899360 2728530..2728928 1 NC_007775.1 identified by similarity to PIR:AD2038; ISSoc4, transposase orfA 2728928 3899360 CYA_2709 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfA YP_476080.1 2728530 D 321327 CDS YP_476081.1 86607318 3899361 2728910..2729476 1 NC_007775.1 identified by similarity to GB:AAC97587.1; ISSoc4, transposase orfB 2729476 3899361 CYA_2710 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfB YP_476081.1 2728910 D 321327 CDS YP_476082.1 86607319 3899362 2729586..2730440 1 NC_007775.1 identified by match to protein family HMM PF01061; drug exporter ABC transporter permease 2730440 3899362 CYA_2711 Synechococcus sp. JA-3-3Ab drug exporter ABC transporter permease YP_476082.1 2729586 D 321327 CDS YP_476083.1 86607320 3899363 complement(2730464..2730679) 1 NC_007775.1 hypothetical protein 2730679 3899363 CYA_2712 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476083.1 2730464 R 321327 CDS YP_476084.1 86607321 3899364 2730798..2731442 1 NC_007775.1 identified by similarity to PIR:AB2392; hypothetical protein 2731442 3899364 CYA_2713 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476084.1 2730798 D 321327 CDS YP_476085.1 86607322 3899365 complement(2731625..2734870) 1 NC_007775.1 identified by match to protein family HMM PF01590; match to protein family HMM PF02518; GAF domain/histidine kinase domain-containing protein 2734870 3899365 CYA_2714 Synechococcus sp. JA-3-3Ab GAF domain/histidine kinase domain-containing protein YP_476085.1 2731625 R 321327 CDS YP_476086.1 86607323 3899366 complement(2734803..2736242) 1 NC_007775.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2736242 gltX 3899366 gltX Synechococcus sp. JA-3-3Ab glutamyl-tRNA synthetase YP_476086.1 2734803 R 321327 CDS YP_476087.1 86607324 3899367 2736469..2736819 1 NC_007775.1 hypothetical protein 2736819 3899367 CYA_2716 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476087.1 2736469 D 321327 CDS YP_476088.1 86607325 3899368 2736917..2737156 1 NC_007775.1 identified by similarity to GB:BAC10019.1; hypothetical protein 2737156 3899368 CYA_2717 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476088.1 2736917 D 321327 CDS YP_476089.1 86607326 3899369 complement(2737203..2738195) 1 NC_007775.1 hypothetical protein 2738195 3899369 CYA_2718 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476089.1 2737203 R 321327 CDS YP_476090.1 86607327 3899370 complement(2738226..2738507) 1 NC_007775.1 hypothetical protein 2738507 3899370 CYA_2719 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476090.1 2738226 R 321327 CDS YP_529506.1 90296799 3899372 2739836..2740009 1 NC_007775.1 This gene is disrupted by an insertion of an ISSoc4 element.; ISSoc3, orfA transposase, interruption-N 2740009 3899372 CYA_2721 Synechococcus sp. JA-3-3Ab ISSoc3, orfA transposase, interruption-N YP_529506.1 2739836 D 321327 CDS YP_476091.1 86607328 3899373 2740043..2740447 1 NC_007775.1 identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfA 2740447 3899373 CYA_2722 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfA YP_476091.1 2740043 D 321327 CDS YP_529507.1 90296800 3969019 2741015..2741329 1 NC_007775.1 This gene is disrupted by an insertion of an ISSoc4 element.; identified by match to protein family HMM PF01797; ISSoc3, orfA transposase, interruption-C 2741329 3969019 CYA_2724 Synechococcus sp. JA-3-3Ab ISSoc3, orfA transposase, interruption-C YP_529507.1 2741015 D 321327 CDS YP_476092.1 86607329 3898693 2741474..2741728 1 NC_007775.1 hypothetical protein 2741728 3898693 CYA_2725 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476092.1 2741474 D 321327 CDS YP_476093.1 86607330 3898694 2741783..2742499 1 NC_007775.1 identified by match to protein family HMM PF04402; outer membrane protein 2742499 3898694 CYA_2726 Synechococcus sp. JA-3-3Ab outer membrane protein YP_476093.1 2741783 D 321327 CDS YP_476094.1 86607331 3898695 2742709..2744052 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator 2744052 3898695 CYA_2727 Synechococcus sp. JA-3-3Ab response regulator YP_476094.1 2742709 D 321327 CDS YP_476095.1 86607332 3898696 2744120..2744623 1 NC_007775.1 hypothetical protein 2744623 3898696 CYA_2728 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476095.1 2744120 D 321327 CDS YP_476096.1 86607333 3898697 2744659..2745534 1 NC_007775.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 2745534 aroE 3898697 aroE Synechococcus sp. JA-3-3Ab shikimate 5-dehydrogenase YP_476096.1 2744659 D 321327 CDS YP_476097.1 86607334 3898698 2745811..2747475 1 NC_007775.1 hypothetical protein 2747475 3898698 CYA_2730 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476097.1 2745811 D 321327 CDS YP_476098.1 86607335 3898699 2747491..2747706 1 NC_007775.1 hypothetical protein 2747706 3898699 CYA_2731 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476098.1 2747491 D 321327 CDS YP_476099.1 86607336 3898700 complement(2747913..2749709) 1 NC_007775.1 identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456; arginyl-tRNA synthetase 2749709 argS 3898700 argS Synechococcus sp. JA-3-3Ab arginyl-tRNA synthetase YP_476099.1 2747913 R 321327 CDS YP_476100.1 86607337 3898701 2749921..2750025 1 NC_007775.1 hypothetical protein 2750025 3898701 CYA_2733 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476100.1 2749921 D 321327 CDS YP_476101.1 86607338 3898702 2750055..2750906 1 NC_007775.1 identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta/FixA family protein 2750906 3898702 CYA_2734 Synechococcus sp. JA-3-3Ab electron transfer flavoprotein subunit beta/FixA family protein YP_476101.1 2750055 D 321327 CDS YP_476102.1 86607339 3898703 2751044..2752162 1 NC_007775.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha/FixB family protein 2752162 3898703 CYA_2735 Synechococcus sp. JA-3-3Ab electron transfer flavoprotein subunit alpha/FixB family protein YP_476102.1 2751044 D 321327 CDS YP_476103.1 86607340 3898704 complement(2752181..2752465) 1 NC_007775.1 identified by similarity to PIR:AI1923; match to protein family HMM PF02325; hypothetical protein 2752465 3898704 CYA_2736 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476103.1 2752181 R 321327 CDS YP_476104.1 86607341 3898705 2752755..2753897 1 NC_007775.1 identified by match to protein family HMM PF00072; response regulator 2753897 3898705 CYA_2737 Synechococcus sp. JA-3-3Ab response regulator YP_476104.1 2752755 D 321327 CDS YP_476105.1 86607342 3898706 2754125..2754511 1 NC_007775.1 identified by match to protein family HMM PF00072; response regulator 2754511 3898706 CYA_2738 Synechococcus sp. JA-3-3Ab response regulator YP_476105.1 2754125 D 321327 CDS YP_476106.1 86607343 3898707 2754508..2754873 1 NC_007775.1 identified by match to protein family HMM PF00072; response regulator 2754873 3898707 CYA_2739 Synechococcus sp. JA-3-3Ab response regulator YP_476106.1 2754508 D 321327 CDS YP_476107.1 86607344 3898708 2755039..2755503 1 NC_007775.1 identified by similarity to SP:P07365; match to protein family HMM PF01584; chemotaxis protein cheW 2755503 cheW 3898708 cheW Synechococcus sp. JA-3-3Ab chemotaxis protein cheW YP_476107.1 2755039 D 321327 CDS YP_476108.1 86607345 3898709 2755812..2758262 1 NC_007775.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 2758262 3898709 CYA_2741 Synechococcus sp. JA-3-3Ab methyl-accepting chemotaxis protein YP_476108.1 2755812 D 321327 CDS YP_476109.1 86607346 3899315 2758450..2763711 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; sensor histidine kinase/response regulator 2763711 3899315 CYA_2742 Synechococcus sp. JA-3-3Ab sensor histidine kinase/response regulator YP_476109.1 2758450 D 321327 CDS YP_476110.1 86607347 3899316 2763846..2764490 1 NC_007775.1 identified by similarity to PIR:AD2429; match to protein family HMM PF03713; hypothetical protein 2764490 3899316 CYA_2743 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476110.1 2763846 D 321327 CDS YP_476111.1 86607348 3899317 2764603..2766219 1 NC_007775.1 identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546; apolipoprotein N-acyltransferase 2766219 lnt 3899317 lnt Synechococcus sp. JA-3-3Ab apolipoprotein N-acyltransferase YP_476111.1 2764603 D 321327 CDS YP_476112.1 86607349 3899319 2766533..2767138 1 NC_007775.1 catalyzes the formation of precorrin-8x from precorrin-6y; precorrin-6B methylase 2767138 cbiT 3899319 cbiT Synechococcus sp. JA-3-3Ab precorrin-6B methylase YP_476112.1 2766533 D 321327 CDS YP_476113.1 86607350 3899320 2767286..2767540 1 NC_007775.1 hypothetical protein 2767540 3899320 CYA_2747 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476113.1 2767286 D 321327 CDS YP_476114.1 86607351 3899321 complement(2767600..2767962) 1 NC_007775.1 RlpA family protein, truncation 2767962 3899321 CYA_2748 Synechococcus sp. JA-3-3Ab RlpA family protein, truncation YP_476114.1 2767600 R 321327 CDS YP_476115.1 86607352 3899322 2768582..2768833 1 NC_007775.1 identified by similarity to SP:P24018; match to protein family HMM PF02941; ferredoxin-thioredoxin reductase, variable subunit 2768833 3899322 CYA_2750 Synechococcus sp. JA-3-3Ab ferredoxin-thioredoxin reductase, variable subunit YP_476115.1 2768582 D 321327 CDS YP_476116.1 86607353 3899323 complement(2768830..2769303) 1 NC_007775.1 identified by similarity to PIR:S76420; hypothetical protein 2769303 3899323 CYA_2749 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476116.1 2768830 R 321327 CDS YP_476117.1 86607354 3899324 2769533..2771449 1 NC_007775.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; cell division protein FtsH 2771449 hflB 3899324 hflB Synechococcus sp. JA-3-3Ab cell division protein FtsH YP_476117.1 2769533 D 321327 CDS YP_476118.1 86607355 3899325 complement(2771629..2773785) 1 NC_007775.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094; alpha-glucan phosphorylase 2773785 3899325 CYA_2752 Synechococcus sp. JA-3-3Ab alpha-glucan phosphorylase YP_476118.1 2771629 R 321327 CDS YP_476119.1 86607356 3899326 complement(2774241..2775344) 1 NC_007775.1 identified by match to protein family HMM TIGR02669; SpoIID/LytB domain-containing protein 2775344 3899326 CYA_2753 Synechococcus sp. JA-3-3Ab SpoIID/LytB domain-containing protein YP_476119.1 2774241 R 321327 CDS YP_476120.1 86607357 3899327 complement(2775738..2776262) 1 NC_007775.1 identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein 2776262 3899327 CYA_2754 Synechococcus sp. JA-3-3Ab cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein YP_476120.1 2775738 R 321327 CDS YP_476121.1 86607358 3899328 2776450..2777682 1 NC_007775.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; S1C family peptidase 2777682 3899328 CYA_2755 Synechococcus sp. JA-3-3Ab S1C family peptidase YP_476121.1 2776450 D 321327 CDS YP_476122.1 86607359 3899329 2778001..2779584 1 NC_007775.1 identified by match to protein family HMM PF00069; match to protein family HMM PF05419; protein kinase 2779584 3899329 CYA_2756 Synechococcus sp. JA-3-3Ab protein kinase YP_476122.1 2778001 D 321327 CDS YP_476123.1 86607360 3899330 complement(2779652..2780014) 1 NC_007775.1 hypothetical protein 2780014 3899330 CYA_2757 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476123.1 2779652 R 321327 CDS YP_476124.1 86607361 3899331 complement(2781031..2782305) 1 NC_007775.1 identified by match to protein family HMM PF01266; match to protein family HMM PF07992; oxidoreductase, FAD-dependent 2782305 3899331 CYA_2758 Synechococcus sp. JA-3-3Ab oxidoreductase, FAD-dependent YP_476124.1 2781031 R 321327 CDS YP_476125.1 86607362 3899332 2782776..2785574 1 NC_007775.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation transport ATPase 2785574 3899332 CYA_2759 Synechococcus sp. JA-3-3Ab cation transport ATPase YP_476125.1 2782776 D 321327 CDS YP_476126.1 86607363 3899333 complement(2785628..2786557) 1 NC_007775.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01777; NAD-dependent epimerase/dehydratase family protein 2786557 3899333 CYA_2760 Synechococcus sp. JA-3-3Ab NAD-dependent epimerase/dehydratase family protein YP_476126.1 2785628 R 321327 CDS YP_476127.1 86607364 3899261 2786900..2787499 1 NC_007775.1 identified by similarity to PIR:S74966; hypothetical protein 2787499 3899261 CYA_2761 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476127.1 2786900 D 321327 CDS YP_476128.1 86607365 3899262 complement(2787500..2788486) 1 NC_007775.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 2788486 hemB 3899262 hemB Synechococcus sp. JA-3-3Ab delta-aminolevulinic acid dehydratase YP_476128.1 2787500 R 321327 CDS YP_476130.1 86607367 3899264 2789589..2789711 1 NC_007775.1 hypothetical protein 2789711 3899264 CYA_2764 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476130.1 2789589 D 321327 CDS YP_476131.1 86607368 3899265 2789830..2789946 1 NC_007775.1 4.8-kDa protein; may be involved in assembling and stabilizing of PSII dimers; photosystem II reaction center I protein I 2789946 psbI 3899265 psbI Synechococcus sp. JA-3-3Ab photosystem II reaction center I protein I YP_476131.1 2789830 D 321327 CDS YP_476132.1 86607369 3899266 complement(2790058..2790498) 1 NC_007775.1 lipoprotein 2790498 3899266 CYA_2766 Synechococcus sp. JA-3-3Ab lipoprotein YP_476132.1 2790058 R 321327 CDS YP_476133.1 86607370 3899267 2790553..2790654 1 NC_007775.1 hypothetical protein 2790654 3899267 CYA_2768 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476133.1 2790553 D 321327 CDS YP_476134.1 86607371 3899268 complement(2790651..2791283) 1 NC_007775.1 identified by match to protein family HMM PF02632; BioY family protein 2791283 3899268 CYA_2767 Synechococcus sp. JA-3-3Ab BioY family protein YP_476134.1 2790651 R 321327 CDS YP_476135.1 86607372 3899269 2791340..2792134 1 NC_007775.1 identified by match to protein family HMM PF00459; inositol monophosphatase family protein 2792134 3899269 CYA_2769 Synechococcus sp. JA-3-3Ab inositol monophosphatase family protein YP_476135.1 2791340 D 321327 CDS YP_476136.1 86607373 3899271 complement(2792561..2793019) 1 NC_007775.1 identified by similarity to PIR:AD1978; hypothetical protein 2793019 3899271 CYA_2771 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476136.1 2792561 R 321327 CDS YP_476137.1 86607374 3899272 2793174..2795138 1 NC_007775.1 identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; sensor histidine kinase 2795138 3899272 CYA_2773 Synechococcus sp. JA-3-3Ab sensor histidine kinase YP_476137.1 2793174 D 321327 CDS YP_476138.1 86607375 3899273 complement(2795117..2795275) 1 NC_007775.1 hypothetical protein 2795275 3899273 CYA_2772 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476138.1 2795117 R 321327 CDS YP_476139.1 86607376 3899274 complement(2795279..2795845) 1 NC_007775.1 identified by match to protein family HMM PF03364; cyclase/dehydrase 2795845 3899274 CYA_2774 Synechococcus sp. JA-3-3Ab cyclase/dehydrase YP_476139.1 2795279 R 321327 CDS YP_476140.1 86607377 3899275 complement(2795942..2796187) 1 NC_007775.1 hypothetical protein 2796187 3899275 CYA_2775 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476140.1 2795942 R 321327 CDS YP_476141.1 86607378 3899276 2796321..2796410 1 NC_007775.1 identified by similarity to SP:Q8DKN2; match to protein family HMM PF03742; cytochrome b6-f complex subunit VIII 2796410 petN 3899276 petN Synechococcus sp. JA-3-3Ab cytochrome b6-f complex subunit VIII YP_476141.1 2796321 D 321327 CDS YP_476142.1 86607379 3899277 2796426..2796614 1 NC_007775.1 hypothetical protein 2796614 3899277 CYA_2777 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476142.1 2796426 D 321327 CDS YP_476143.1 86607380 3899278 complement(2796655..2797047) 1 NC_007775.1 identified by similarity to GB:BAC08685.1; match to protein family HMM PF03745; hypothetical protein 2797047 3899278 CYA_2778 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476143.1 2796655 R 321327 CDS YP_476144.1 86607381 3899008 complement(2797035..2799542) 1 NC_007775.1 identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; sensor histidine kinase 2799542 3899008 CYA_2779 Synechococcus sp. JA-3-3Ab sensor histidine kinase YP_476144.1 2797035 R 321327 CDS YP_476145.1 86607382 3899009 complement(2799667..2800452) 1 NC_007775.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase 2800452 3899009 CYA_2780 Synechococcus sp. JA-3-3Ab TatD family hydrolase YP_476145.1 2799667 R 321327 CDS YP_476146.1 86607383 3899010 2800623..2801213 1 NC_007775.1 identified by similarity to GB:BAC09340.1; hypothetical protein 2801213 3899010 CYA_2781 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476146.1 2800623 D 321327 CDS YP_476147.1 86607384 3899011 2801731..2802735 1 NC_007775.1 identified by match to protein family HMM PF01547; iron ABC transporter iron-binding subunit 2802735 3899011 CYA_2782 Synechococcus sp. JA-3-3Ab iron ABC transporter iron-binding subunit YP_476147.1 2801731 D 321327 CDS YP_476148.1 86607385 3899012 2802736..2804442 1 NC_007775.1 identified by match to protein family HMM PF00528; iron ABC transporter permease 2804442 3899012 CYA_2783 Synechococcus sp. JA-3-3Ab iron ABC transporter permease YP_476148.1 2802736 D 321327 CDS YP_476149.1 86607386 3899013 2804390..2804542 1 NC_007775.1 hypothetical protein 2804542 3899013 CYA_2784 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476149.1 2804390 D 321327 CDS YP_476150.1 86607387 3899014 2804598..2805950 1 NC_007775.1 identified by similarity to SP:P10904; match to protein family HMM PF01547; match to protein family HMM TIGR01409; glycerol-3-phosphate ABC transporter substrate binding protein 2805950 ugpB 3899014 ugpB Synechococcus sp. JA-3-3Ab glycerol-3-phosphate ABC transporter substrate binding protein YP_476150.1 2804598 D 321327 CDS YP_476151.1 86607388 3899015 2806202..2807254 1 NC_007775.1 identified by similarity to SP:P10905; match to protein family HMM PF00528; glycerol-3-phosphate ABC transporter permease 2807254 upgA 3899015 upgA Synechococcus sp. JA-3-3Ab glycerol-3-phosphate ABC transporter permease YP_476151.1 2806202 D 321327 CDS YP_476152.1 86607389 3899016 complement(2807279..2807713) 1 NC_007775.1 identified by similarity to PIR:S74730; hypothetical protein 2807713 3899016 CYA_2787 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476152.1 2807279 R 321327 CDS YP_476153.1 86607390 3899017 complement(2807749..2808024) 1 NC_007775.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 2808024 rpsO 3899017 rpsO Synechococcus sp. JA-3-3Ab 30S ribosomal protein S15 YP_476153.1 2807749 R 321327 CDS YP_476154.1 86607391 3899018 2808113..2808793 1 NC_007775.1 identified by match to protein family HMM PF02985; match to protein family HMM PF03130; phycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit-like protein 2808793 3899018 CYA_2789 Synechococcus sp. JA-3-3Ab phycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit-like protein YP_476154.1 2808113 D 321327 CDS YP_476155.1 86607392 3899019 complement(2808860..2809345) 1 NC_007775.1 identified by similarity to SP:P80556; match to protein family HMM PF00502; allophycocyanin alpha, B subunit 2809345 apcD 3899019 apcD Synechococcus sp. JA-3-3Ab allophycocyanin alpha, B subunit YP_476155.1 2808860 R 321327 CDS YP_476156.1 86607393 3899020 complement(2809533..2810900) 1 NC_007775.1 identified by similarity to GB:AAB30824.1; match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching mobility protein PilT 2810900 pilT-2 3899020 pilT-2 Synechococcus sp. JA-3-3Ab twitching mobility protein PilT YP_476156.1 2809533 R 321327 CDS YP_476157.1 86607394 3899021 complement(2811142..2811831) 1 NC_007775.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2811831 folE 3899021 folE Synechococcus sp. JA-3-3Ab GTP cyclohydrolase I YP_476157.1 2811142 R 321327 CDS YP_476158.1 86607395 3899022 complement(2811955..2812680) 1 NC_007775.1 identified by match to protein family HMM PF00106; short chain dehydrogenase 2812680 3899022 CYA_2793 Synechococcus sp. JA-3-3Ab short chain dehydrogenase YP_476158.1 2811955 R 321327 CDS YP_476159.1 86607396 3899023 2812905..2814101 1 NC_007775.1 identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 2814101 3899023 CYA_2794 Synechococcus sp. JA-3-3Ab iron ABC transporter ATP-binding protein YP_476159.1 2812905 D 321327 CDS YP_476160.1 86607397 3899024 2814557..2815450 1 NC_007775.1 identified by match to protein family HMM PF04278; chloroplast envelope protein translocase (CEPT or Tic-Toc) family protein 2815450 3899024 CYA_2795 Synechococcus sp. JA-3-3Ab chloroplast envelope protein translocase (CEPT or Tic-Toc) family protein YP_476160.1 2814557 D 321327 CDS YP_476161.1 86607398 3899025 2815492..2816349 1 NC_007775.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; HemK family methyltransferase 2816349 3899025 CYA_2796 Synechococcus sp. JA-3-3Ab HemK family methyltransferase YP_476161.1 2815492 D 321327 CDS YP_476162.1 86607399 3899026 2816491..2817261 1 NC_007775.1 identified by match to protein family HMM PF00512; sensor histidine kinase 2817261 3899026 CYA_2797 Synechococcus sp. JA-3-3Ab sensor histidine kinase YP_476162.1 2816491 D 321327 CDS YP_476163.1 86607400 3899027 complement(2817287..2817688) 1 NC_007775.1 identified by similarity to SP:P74367; photosystem II protein 2817688 3899027 CYA_2798 Synechococcus sp. JA-3-3Ab photosystem II protein YP_476163.1 2817287 R 321327 CDS YP_476164.1 86607401 3898989 2817785..2818501 1 NC_007775.1 identified by match to protein family HMM PF07298; NnrU family protein 2818501 3898989 CYA_2799 Synechococcus sp. JA-3-3Ab NnrU family protein YP_476164.1 2817785 D 321327 CDS YP_476165.1 86607402 3898990 2818536..2818928 1 NC_007775.1 identified by match to protein family HMM PF00085; thioredoxin 2818928 trx-3 3898990 trx-3 Synechococcus sp. JA-3-3Ab thioredoxin YP_476165.1 2818536 D 321327 CDS YP_476166.1 86607403 3898991 complement(2818865..2820454) 1 NC_007775.1 identified by match to protein family HMM PF02538; hydantoin utilization protein B 2820454 3898991 CYA_2800 Synechococcus sp. JA-3-3Ab hydantoin utilization protein B YP_476166.1 2818865 R 321327 CDS YP_476167.1 86607404 3898992 complement(2820451..2820759) 1 NC_007775.1 hypothetical protein 2820759 3898992 CYA_2802 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476167.1 2820451 R 321327 CDS YP_476168.1 86607405 3898993 complement(2820791..2821531) 1 NC_007775.1 identified by match to protein family HMM PF00595; PDZ domain-containing protein 2821531 3898993 CYA_2803 Synechococcus sp. JA-3-3Ab PDZ domain-containing protein YP_476168.1 2820791 R 321327 CDS YP_476169.1 86607406 3898994 complement(2821568..2822518) 1 NC_007775.1 identified by similarity to SP:P52279; match to protein family HMM PF00561; match to protein family HMM TIGR01249; prolyl aminopeptidase 2822518 pip 3898994 pip Synechococcus sp. JA-3-3Ab prolyl aminopeptidase YP_476169.1 2821568 R 321327 CDS YP_476170.1 86607407 3898995 complement(2822552..2824759) 1 NC_007775.1 identified by match to protein family HMM PF03065; glycosyl hydrolase family protein 2824759 3898995 CYA_2805 Synechococcus sp. JA-3-3Ab glycosyl hydrolase family protein YP_476170.1 2822552 R 321327 CDS YP_476171.1 86607408 3898996 2824935..2825477 1 NC_007775.1 identified by match to protein family HMM PF01844; HNH endonuclease domain-containing protein 2825477 3898996 CYA_2806 Synechococcus sp. JA-3-3Ab HNH endonuclease domain-containing protein YP_476171.1 2824935 D 321327 CDS YP_476172.1 86607409 3898997 2825525..2826088 1 NC_007775.1 CpeS-like protein 2826088 3898997 CYA_2807 Synechococcus sp. JA-3-3Ab CpeS-like protein YP_476172.1 2825525 D 321327 CDS YP_476173.1 86607410 3898998 2826212..2828101 1 NC_007775.1 identified by match to protein family HMM PF00004; AAA ATPase 2828101 3898998 CYA_2809 Synechococcus sp. JA-3-3Ab AAA ATPase YP_476173.1 2826212 D 321327 CDS YP_476174.1 86607411 3898999 complement(2828098..2829564) 1 NC_007775.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913; match to protein family HMM TIGR00387; glycolate oxidase subunit GlcD 2829564 glcD 3898999 glcD Synechococcus sp. JA-3-3Ab glycolate oxidase subunit GlcD YP_476174.1 2828098 R 321327 CDS YP_476175.1 86607412 3899000 2829694..2830884 1 NC_007775.1 identified by similarity to PIR:AD1808; hypothetical protein 2830884 3899000 CYA_2810 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476175.1 2829694 D 321327 CDS YP_476176.1 86607413 3899001 2831007..2831207 1 NC_007775.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 2831207 rpmI 3899001 rpmI Synechococcus sp. JA-3-3Ab 50S ribosomal protein L35 YP_476176.1 2831007 D 321327 CDS YP_476177.1 86607414 3899002 2831330..2831686 1 NC_007775.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2831686 rplT 3899002 rplT Synechococcus sp. JA-3-3Ab 50S ribosomal protein L20 YP_476177.1 2831330 D 321327 CDS YP_476178.1 86607415 3899003 2831691..2832491 1 NC_007775.1 identified by match to protein family HMM PF00497; amino acid ABC transporter substrate-binding protein 2832491 3899003 CYA_2814 Synechococcus sp. JA-3-3Ab amino acid ABC transporter substrate-binding protein YP_476178.1 2831691 D 321327 CDS YP_476179.1 86607416 3899004 complement(2832488..2834101) 1 NC_007775.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 2834101 purH 3899004 purH Synechococcus sp. JA-3-3Ab bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_476179.1 2832488 R 321327 CDS YP_476180.1 86607417 3899005 2834360..2835076 1 NC_007775.1 identified by match to protein family HMM PF01618; MotA/TolQ/ExbB family proton transporter 2835076 3899005 CYA_2815 Synechococcus sp. JA-3-3Ab MotA/TolQ/ExbB family proton transporter YP_476180.1 2834360 D 321327 CDS YP_476181.1 86607418 3899006 2835080..2835505 1 NC_007775.1 identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472; ExbD/TolR family proton transporter 2835505 3899006 CYA_2816 Synechococcus sp. JA-3-3Ab ExbD/TolR family proton transporter YP_476181.1 2835080 D 321327 CDS YP_476182.1 86607419 3899007 complement(2835539..2836483) 1 NC_007775.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 2836483 argF 3899007 argF Synechococcus sp. JA-3-3Ab ornithine carbamoyltransferase YP_476182.1 2835539 R 321327 CDS YP_476183.1 86607420 3898950 complement(2836589..2837884) 1 NC_007775.1 identified by similarity to SP:Q55669; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; C-terminal processing peptidase 2837884 prc-2 3898950 prc-2 Synechococcus sp. JA-3-3Ab C-terminal processing peptidase YP_476183.1 2836589 R 321327 CDS YP_476184.1 86607421 3898951 complement(2837907..2838101) 1 NC_007775.1 hypothetical protein 2838101 3898951 CYA_2819 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476184.1 2837907 R 321327 CDS YP_476185.1 86607422 3898952 2838133..2839500 1 NC_007775.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 2839500 proA 3898952 proA Synechococcus sp. JA-3-3Ab gamma-glutamyl phosphate reductase YP_476185.1 2838133 D 321327 CDS YP_476186.1 86607423 3898953 2839764..2840309 1 NC_007775.1 identified by match to protein family HMM PF00076; RNA-binding protein 2840309 3898953 CYA_2821 Synechococcus sp. JA-3-3Ab RNA-binding protein YP_476186.1 2839764 D 321327 CDS YP_476187.1 86607424 3898954 2840401..2841195 1 NC_007775.1 identified by match to protein family HMM PF01323; DSBA thioredoxin domain-containing protein 2841195 3898954 CYA_2822 Synechococcus sp. JA-3-3Ab DSBA thioredoxin domain-containing protein YP_476187.1 2840401 D 321327 CDS YP_476188.1 86607425 3898955 2841219..2841914 1 NC_007775.1 identified by match to protein family HMM PF01844; HNH endonuclease domain-containing protein 2841914 3898955 CYA_2823 Synechococcus sp. JA-3-3Ab HNH endonuclease domain-containing protein YP_476188.1 2841219 D 321327 CDS YP_476189.1 86607426 3898956 complement(2841989..2843173) 1 NC_007775.1 identified by match to protein family HMM PF05036; sporulation and cell division repeat-containing protein 2843173 3898956 CYA_2824 Synechococcus sp. JA-3-3Ab sporulation and cell division repeat-containing protein YP_476189.1 2841989 R 321327 CDS YP_476190.1 86607427 3898957 complement(2843283..2843699) 1 NC_007775.1 hypothetical protein 2843699 3898957 CYA_2825 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476190.1 2843283 R 321327 CDS YP_476191.1 86607428 3898958 2843803..2846259 1 NC_007775.1 identified by match to protein family HMM PF01368; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 2846259 recJ-2 3898958 recJ-2 Synechococcus sp. JA-3-3Ab single-stranded-DNA-specific exonuclease RecJ YP_476191.1 2843803 D 321327 CDS YP_476192.1 86607429 3898959 2846282..2846947 1 NC_007775.1 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 2846947 3898959 CYA_2827 Synechococcus sp. JA-3-3Ab Ser/Thr protein phosphatase family protein YP_476192.1 2846282 D 321327 CDS YP_476193.1 86607430 3898960 2846998..2847591 1 NC_007775.1 identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042; non-canonical purine NTP pyrophosphatase 2847591 rdgB 3898960 rdgB Synechococcus sp. JA-3-3Ab non-canonical purine NTP pyrophosphatase YP_476193.1 2846998 D 321327 CDS YP_476194.1 86607431 3898961 2847784..2848905 1 NC_007775.1 hypothetical protein 2848905 3898961 CYA_2829 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476194.1 2847784 D 321327 CDS YP_476195.1 86607432 3898962 2848921..2849535 1 NC_007775.1 identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase 2849535 tmk 3898962 tmk Synechococcus sp. JA-3-3Ab thymidylate kinase YP_476195.1 2848921 D 321327 CDS YP_476196.1 86607433 3898963 2849659..2850645 1 NC_007775.1 identified by match to protein family HMM PF05235; CHAD domain-containing protein 2850645 3898963 CYA_2831 Synechococcus sp. JA-3-3Ab CHAD domain-containing protein YP_476196.1 2849659 D 321327 CDS YP_476197.1 86607434 3898964 2850743..2851807 1 NC_007775.1 identified by similarity to SP:P23861; match to protein family HMM PF01547; polyamine transporter, polyamine-binding protein 2851807 3898964 CYA_2832 Synechococcus sp. JA-3-3Ab polyamine transporter, polyamine-binding protein YP_476197.1 2850743 D 321327 CDS YP_476198.1 86607435 3898965 2851881..2852051 1 NC_007775.1 CAB/ELIP/HLIP family protein 2852051 3898965 CYA_2834 Synechococcus sp. JA-3-3Ab CAB/ELIP/HLIP family protein YP_476198.1 2851881 D 321327 CDS YP_476199.1 86607436 3898966 complement(2851884..2852084) 1 NC_007775.1 hypothetical protein 2852084 3898966 CYA_2833 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476199.1 2851884 R 321327 CDS YP_476200.1 86607437 3898967 complement(2852088..2852207) 1 NC_007775.1 hypothetical protein 2852207 3898967 CYA_2835 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476200.1 2852088 R 321327 CDS YP_476201.1 86607438 3898968 complement(2852264..2856835) 1 NC_007775.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator 2856835 3898968 CYA_2836 Synechococcus sp. JA-3-3Ab sensory box histidine kinase/response regulator YP_476201.1 2852264 R 321327 CDS YP_476202.1 86607439 3898969 2857206..2857583 1 NC_007775.1 hypothetical protein 2857583 3898969 CYA_2837 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476202.1 2857206 D 321327 CDS YP_476203.1 86607440 3898933 2857857..2858252 1 NC_007775.1 identified by similarity to GB:BAC71213.1; hypothetical protein 2858252 3898933 CYA_2838 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476203.1 2857857 D 321327 CDS YP_476204.1 86607441 3898934 2858386..2858478 1 NC_007775.1 hypothetical protein 2858478 3898934 CYA_2839 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476204.1 2858386 D 321327 CDS YP_476205.1 86607442 3898936 2859006..2860109 1 NC_007775.1 identified by match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449; queuine tRNA-ribosyltransferase 2860109 tgt 3898936 tgt Synechococcus sp. JA-3-3Ab queuine tRNA-ribosyltransferase YP_476205.1 2859006 D 321327 CDS YP_476206.1 86607443 3898937 2860211..2860822 1 NC_007775.1 hypothetical protein 2860822 3898937 CYA_2842 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476206.1 2860211 D 321327 CDS YP_476207.1 86607444 3898938 2860886..2862127 1 NC_007775.1 hypothetical protein 2862127 3898938 CYA_2843 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476207.1 2860886 D 321327 CDS YP_476208.1 86607445 3898939 2862134..2862430 1 NC_007775.1 hypothetical protein 2862430 3898939 CYA_2844 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476208.1 2862134 D 321327 CDS YP_476209.1 86607446 3898940 2862567..2862965 1 NC_007775.1 identified by similarity to PIR:AD2038; ISSoc4, transposase orfA 2862965 3898940 CYA_2845 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfA YP_476209.1 2862567 D 321327 CDS YP_476210.1 86607447 3898941 2863004..2863513 1 NC_007775.1 identified by similarity to PIR:AI1851; ISSoc4, transposase orfB 2863513 3898941 CYA_2846 Synechococcus sp. JA-3-3Ab ISSoc4, transposase orfB YP_476210.1 2863004 D 321327 CDS YP_476211.1 86607448 3898943 2863854..2864408 1 NC_007775.1 identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281; segregation and condensation protein B 2864408 scpB 3898943 scpB Synechococcus sp. JA-3-3Ab segregation and condensation protein B YP_476211.1 2863854 D 321327 CDS YP_476212.1 86607449 3898944 complement(2864615..2865265) 1 NC_007775.1 identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 2865265 3898944 CYA_2849 Synechococcus sp. JA-3-3Ab anti-oxidant AhpCTSA family protein YP_476212.1 2864615 R 321327 CDS YP_476213.1 86607450 3898945 2865498..2866601 1 NC_007775.1 identified by similarity to PIR:AD1911; hypothetical protein 2866601 3898945 CYA_2850 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476213.1 2865498 D 321327 CDS YP_476214.1 86607451 3898946 complement(2866651..2867733) 1 NC_007775.1 identified by match to protein family HMM PF00924; small conductance mechanosensitive ion channel (MscS) family protein 2867733 3898946 CYA_2851 Synechococcus sp. JA-3-3Ab small conductance mechanosensitive ion channel (MscS) family protein YP_476214.1 2866651 R 321327 CDS YP_476215.1 86607452 3898947 complement(2867888..2868757) 1 NC_007775.1 identified by match to protein family HMM PF02230; phospholipase/carboxylesterase 2868757 3898947 CYA_2852 Synechococcus sp. JA-3-3Ab phospholipase/carboxylesterase YP_476215.1 2867888 R 321327 CDS YP_476216.1 86607453 3898948 complement(2868880..2869464) 1 NC_007775.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease family protein 2869464 3898948 CYA_2853 Synechococcus sp. JA-3-3Ab CAAX amino terminal protease family protein YP_476216.1 2868880 R 321327 CDS YP_476217.1 86607454 3898949 complement(2869616..2870695) 1 NC_007775.1 identified by match to protein family HMM PF04230; polysaccharide pyruvyl transferase 2870695 3898949 CYA_2854 Synechococcus sp. JA-3-3Ab polysaccharide pyruvyl transferase YP_476217.1 2869616 R 321327 CDS YP_476218.1 86607455 3898838 complement(2871121..2871414) 1 NC_007775.1 hypothetical protein 2871414 3898838 CYA_2855 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476218.1 2871121 R 321327 CDS YP_476219.1 86607456 3898839 2871556..2873538 1 NC_007775.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; 1A family penicillin-binding protein 2873538 3898839 CYA_2856 Synechococcus sp. JA-3-3Ab 1A family penicillin-binding protein YP_476219.1 2871556 D 321327 CDS YP_476220.1 86607457 3898840 2873535..2873894 1 NC_007775.1 hypothetical protein 2873894 3898840 CYA_2857 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476220.1 2873535 D 321327 CDS YP_476221.1 86607458 3898841 2874084..2874683 1 NC_007775.1 identified by similarity to SP:P50061; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase, Fe 2874683 sodB 3898841 sodB Synechococcus sp. JA-3-3Ab superoxide dismutase, Fe YP_476221.1 2874084 D 321327 CDS YP_476222.1 86607459 3898842 complement(2874783..2876375) 1 NC_007775.1 identified by similarity to GB:AAD42859.1; match to protein family HMM PF00069; serine/threonine protein kinase 2876375 3898842 CYA_2859 Synechococcus sp. JA-3-3Ab serine/threonine protein kinase YP_476222.1 2874783 R 321327 CDS YP_476223.1 86607460 3898843 2876391..2876576 1 NC_007775.1 hypothetical protein 2876576 3898843 CYA_2860 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476223.1 2876391 D 321327 CDS YP_476224.1 86607461 3898844 2876637..2878715 1 NC_007775.1 identified by match to protein family HMM PF00582; match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein 2878715 3898844 CYA_2861 Synechococcus sp. JA-3-3Ab monovalent cation:proton antiporter-2 (CPA2) family protein YP_476224.1 2876637 D 321327 CDS YP_476225.1 86607462 3898845 2879174..2881366 1 NC_007775.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 2881366 glyS 3898845 glyS Synechococcus sp. JA-3-3Ab glycyl-tRNA synthetase subunit beta YP_476225.1 2879174 D 321327 CDS YP_476226.1 86607463 3898846 complement(2881409..2882332) 1 NC_007775.1 identified by match to protein family HMM PF01636; match to protein family HMM PF03881; fructosamine kinase family protein 2882332 3898846 CYA_2863 Synechococcus sp. JA-3-3Ab fructosamine kinase family protein YP_476226.1 2881409 R 321327 CDS YP_476227.1 86607464 3898847 complement(2882340..2882792) 1 NC_007775.1 identified by similarity to GB:BAC09213.1; hypothetical protein 2882792 3898847 CYA_2864 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476227.1 2882340 R 321327 CDS YP_476228.1 86607465 3898848 complement(2882905..2883444) 1 NC_007775.1 identified by match to protein family HMM PF03029; small GTP-binding protein 2883444 3898848 CYA_2865 Synechococcus sp. JA-3-3Ab small GTP-binding protein YP_476228.1 2882905 R 321327 CDS YP_476229.1 86607466 3898849 complement(2883501..2884055) 1 NC_007775.1 identified by similarity to GB:BAC09541.1; hypothetical protein 2884055 3898849 CYA_2866 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476229.1 2883501 R 321327 CDS YP_476230.1 86607467 3898850 complement(2884109..2884477) 1 NC_007775.1 identified by match to protein family HMM PF03259; roadblock/LC7 domain-contain protein 2884477 3898850 CYA_2867 Synechococcus sp. JA-3-3Ab roadblock/LC7 domain-contain protein YP_476230.1 2884109 R 321327 CDS YP_476231.1 86607468 3898851 complement(2884602..2885483) 1 NC_007775.1 identified by similarity to GB:BAC09544.1; hypothetical protein 2885483 3898851 CYA_2868 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476231.1 2884602 R 321327 CDS YP_476232.1 86607469 3898852 complement(2885818..2886651) 1 NC_007775.1 identified by similarity to GB:BAC09544.1; hypothetical protein 2886651 3898852 CYA_2869 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476232.1 2885818 R 321327 CDS YP_476233.1 86607470 3898853 complement(2886813..2887649) 1 NC_007775.1 hypothetical protein 2887649 3898853 CYA_2870 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476233.1 2886813 R 321327 CDS YP_476234.1 86607471 3898854 complement(2887938..2890445) 1 NC_007775.1 identified by similarity to SP:P37279; similarity to SP:P37385; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 2890445 3898854 CYA_2871 Synechococcus sp. JA-3-3Ab copper-translocating P-type ATPase YP_476234.1 2887938 R 321327 CDS YP_476235.1 86607472 3898855 complement(2890538..2890807) 1 NC_007775.1 hypothetical protein 2890807 3898855 CYA_2872 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476235.1 2890538 R 321327 CDS YP_476236.1 86607473 3898856 complement(2890820..2892085) 1 NC_007775.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 2892085 fabF 3898856 fabF Synechococcus sp. JA-3-3Ab 3-oxoacyl-(acyl carrier protein) synthase II YP_476236.1 2890820 R 321327 CDS YP_476237.1 86607474 3898857 complement(2892183..2892428) 1 NC_007775.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2892428 acpP 3898857 acpP Synechococcus sp. JA-3-3Ab acyl carrier protein YP_476237.1 2892183 R 321327 CDS YP_476238.1 86607475 3898743 2892660..2892950 1 NC_007775.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 2892950 rpsF 3898743 rpsF Synechococcus sp. JA-3-3Ab 30S ribosomal protein S6 YP_476238.1 2892660 D 321327 CDS YP_476239.1 86607476 3898744 2893038..2893436 1 NC_007775.1 identified by match to protein family HMM PF00436; single-strand binding protein 2893436 3898744 CYA_2876 Synechococcus sp. JA-3-3Ab single-strand binding protein YP_476239.1 2893038 D 321327 CDS YP_476240.1 86607477 3898745 2893463..2894092 1 NC_007775.1 identified by match to protein family HMM PF00246; zinc carboxypeptidase 2894092 3898745 CYA_2877 Synechococcus sp. JA-3-3Ab zinc carboxypeptidase YP_476240.1 2893463 D 321327 CDS YP_476241.1 86607478 3898746 2894125..2894838 1 NC_007775.1 identified by match to protein family HMM PF00582; universal stress protein 2894838 3898746 CYA_2878 Synechococcus sp. JA-3-3Ab universal stress protein YP_476241.1 2894125 D 321327 CDS YP_476242.1 86607479 3898747 complement(2894859..2896280) 1 NC_007775.1 hypothetical protein 2896280 3898747 CYA_2879 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476242.1 2894859 R 321327 CDS YP_476243.1 86607480 3898748 complement(2896298..2897866) 1 NC_007775.1 hypothetical protein 2897866 3898748 CYA_2880 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476243.1 2896298 R 321327 CDS YP_476244.1 86607481 3898749 complement(2897891..2898676) 1 NC_007775.1 hypothetical protein 2898676 3898749 CYA_2881 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476244.1 2897891 R 321327 CDS YP_476245.1 86607482 3898750 complement(2898673..2899683) 1 NC_007775.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2899683 3898750 CYA_2882 Synechococcus sp. JA-3-3Ab ABC transporter ATP-binding protein YP_476245.1 2898673 R 321327 CDS YP_476246.1 86607483 3898751 complement(2899886..2900941) 1 NC_007775.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2900941 purM 3898751 purM Synechococcus sp. JA-3-3Ab phosphoribosylaminoimidazole synthetase YP_476246.1 2899886 R 321327 CDS YP_476247.1 86607484 3898752 2901087..2902190 1 NC_007775.1 identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413; rare lipoprotein A family protein 2902190 3898752 CYA_2884 Synechococcus sp. JA-3-3Ab rare lipoprotein A family protein YP_476247.1 2901087 D 321327 CDS YP_476248.1 86607485 3898753 complement(2902191..2903213) 1 NC_007775.1 identified by match to protein family HMM PF00072; response regulator 2903213 3898753 CYA_2885 Synechococcus sp. JA-3-3Ab response regulator YP_476248.1 2902191 R 321327 CDS YP_476249.1 86607486 3898754 complement(2903225..2906293) 1 NC_007775.1 identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07568; match to protein family HMM TIGR00229; sensory box histidine kinase 2906293 3898754 CYA_2886 Synechococcus sp. JA-3-3Ab sensory box histidine kinase YP_476249.1 2903225 R 321327 CDS YP_476250.1 86607487 3898755 complement(2906453..2907451) 1 NC_007775.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 2907451 prs 3898755 prs Synechococcus sp. JA-3-3Ab ribose-phosphate pyrophosphokinase YP_476250.1 2906453 R 321327 CDS YP_476251.1 86607488 3898756 2907571..2909103 1 NC_007775.1 identified by match to protein family HMM PF00005; sugar ABC transporter, ATP-binding protein 2909103 3898756 CYA_2888 Synechococcus sp. JA-3-3Ab sugar ABC transporter, ATP-binding protein YP_476251.1 2907571 D 321327 CDS YP_476252.1 86607489 3898757 2909517..2914181 1 NC_007775.1 identified by match to protein family HMM PF05154; TM2 domain-containing protein 2914181 3898757 CYA_2889 Synechococcus sp. JA-3-3Ab TM2 domain-containing protein YP_476252.1 2909517 D 321327 CDS YP_476253.1 86607490 3898758 2914272..2915582 1 NC_007775.1 identified by match to protein family HMM PF01098; rod shape-determining protein RodA 2915582 3898758 CYA_2890 Synechococcus sp. JA-3-3Ab rod shape-determining protein RodA YP_476253.1 2914272 D 321327 CDS YP_476254.1 86607491 3898759 2915932..2917158 1 NC_007775.1 identified by similarity to OMNI:NT01MC1419; match to protein family HMM PF00266; match to protein family HMM PF01212; class V aminotransferase 2917158 3898759 CYA_2891 Synechococcus sp. JA-3-3Ab class V aminotransferase YP_476254.1 2915932 D 321327 CDS YP_476255.1 86607492 3898760 2917183..2917791 1 NC_007775.1 hypothetical protein 2917791 3898760 CYA_2892 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476255.1 2917183 D 321327 CDS YP_476256.1 86607493 3898761 complement(2917951..2918697) 1 NC_007775.1 identified by similarity to SP:P58563; match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase 2918697 uppS 3898761 uppS Synechococcus sp. JA-3-3Ab undecaprenyl diphosphate synthase YP_476256.1 2917951 R 321327 CDS YP_476257.1 86607494 3898662 complement(2918703..2919626) 1 NC_007775.1 identified by similarity to GB:BAC09314.1; match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein 2919626 3898662 CYA_2894 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476257.1 2918703 R 321327 CDS YP_476258.1 86607495 3898663 complement(2919862..2921238) 1 NC_007775.1 identified by similarity to SP:P23630; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 2921238 lysA 3898663 lysA Synechococcus sp. JA-3-3Ab diaminopimelate decarboxylase YP_476258.1 2919862 R 321327 CDS YP_476259.1 86607496 3898666 complement(2921618..2922979) 1 NC_007775.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 2922979 miaB 3898666 miaB Synechococcus sp. JA-3-3Ab (dimethylallyl)adenosine tRNA methylthiotransferase YP_476259.1 2921618 R 321327 CDS YP_476260.1 86607497 3898667 complement(2923162..2924511) 1 NC_007775.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 2924511 purA 3898667 purA Synechococcus sp. JA-3-3Ab adenylosuccinate synthetase YP_476260.1 2923162 R 321327 CDS YP_476261.1 86607498 3898668 complement(2924669..2926240) 1 NC_007775.1 identified by match to protein family HMM PF03572; S41 family peptidase 2926240 3898668 CYA_2900 Synechococcus sp. JA-3-3Ab S41 family peptidase YP_476261.1 2924669 R 321327 CDS YP_476262.1 86607499 3898669 complement(2926369..2926956) 1 NC_007775.1 identified by match to protein family HMM PF05685; hypothetical protein 2926956 3898669 CYA_2901 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476262.1 2926369 R 321327 CDS YP_476263.1 86607500 3898670 complement(2926874..2928259) 1 NC_007775.1 hypothetical protein 2928259 3898670 CYA_2902 Synechococcus sp. JA-3-3Ab hypothetical protein YP_476263.1 2926874 R 321327 CDS YP_476264.1 86607501 3898671 complement(2928366..2931908) 1 NC_007775.1 identified by match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02169; chromosome segregation protein SMC 2931908 smc 3898671 smc Synechococcus sp. JA-3-3Ab chromosome segregation protein SMC YP_476264.1 2928366 R 321327 CDS YP_476265.1 86607502 3898672 complement(2931984..2932364) 1 NC_007775.1 identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P 2932364 rnpA 3898672 rnpA Synechococcus sp. JA-3-3Ab ribonuclease P YP_476265.1 2931984 R 321327 CDS YP_529508.1 90296801 3898673 complement(2932455..2932595) 1 NC_007775.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 2932595 rpmH 3898673 rpmH Synechococcus sp. JA-3-3Ab 50S ribosomal protein L34 YP_529508.1 2932455 R 321327 CDS