-- dump date 20120504_160009 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 321327000001 SEQ_END SEQ_END NC_007775.1 2932766 2932766 DR NC_007775.1; contig end 2932766..2932766 Synechococcus sp. JA-3-3Ab YP_473497.1 CDS dnaA NC_007775.1 71 1474 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 71..1474 Synechococcus sp. JA-3-3Ab 3897189 YP_473498.1 CDS CYA_0003 NC_007775.1 1645 2334 D hypothetical protein 1645..2334 Synechococcus sp. JA-3-3Ab 3897190 YP_473499.1 CDS CYA_0002 NC_007775.1 2331 3152 R identified by similarity to GB:AAS82375.1; hypothetical protein complement(2331..3152) Synechococcus sp. JA-3-3Ab 3897191 YP_473500.1 CDS CYA_0004 NC_007775.1 3256 5142 R identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; FtsH family metalloprotease complement(3256..5142) Synechococcus sp. JA-3-3Ab 3897192 YP_473501.1 CDS CYA_0005 NC_007775.1 5268 6143 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase complement(5268..6143) Synechococcus sp. JA-3-3Ab 3897091 YP_473502.1 CDS CYA_0006 NC_007775.1 6134 6247 D hypothetical protein 6134..6247 Synechococcus sp. JA-3-3Ab 3897092 YP_473503.1 CDS CYA_0007 NC_007775.1 6354 7019 D hypothetical protein 6354..7019 Synechococcus sp. JA-3-3Ab 3897093 YP_473504.1 CDS CYA_0008 NC_007775.1 7057 9606 R identified by match to protein family HMM PF00521; match to protein family HMM PF03989; type II DNA topoisomerase, A subunit complement(7057..9606) Synechococcus sp. JA-3-3Ab 3897094 YP_473505.1 CDS CYA_0009 NC_007775.1 9806 11209 D identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase family protein 9806..11209 Synechococcus sp. JA-3-3Ab 3897095 YP_473506.1 CDS CYA_0010 NC_007775.1 11268 11660 R identified by match to protein family HMM PF00903; glyoxalase family protein complement(11268..11660) Synechococcus sp. JA-3-3Ab 3897096 YP_473507.1 CDS thiC NC_007775.1 11810 13177 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(11810..13177) Synechococcus sp. JA-3-3Ab 3897097 YP_473508.1 CDS CYA_0012 NC_007775.1 13486 14220 R hypothetical protein complement(13486..14220) Synechococcus sp. JA-3-3Ab 3897098 YP_473509.1 CDS CYA_0013 NC_007775.1 14217 14957 R hypothetical protein complement(14217..14957) Synechococcus sp. JA-3-3Ab 3897099 YP_473510.1 CDS CYA_0014 NC_007775.1 14998 15462 R identified by match to protein family HMM PF05419; GUN4-like family protein complement(14998..15462) Synechococcus sp. JA-3-3Ab 3897100 YP_473511.1 CDS CYA_0015 NC_007775.1 15513 16040 R hypothetical protein complement(15513..16040) Synechococcus sp. JA-3-3Ab 3897101 YP_473512.1 CDS gvpW NC_007775.1 16201 16965 R identified by similarity to GB:CAE11909.1; gas vesicle protein W complement(16201..16965) Synechococcus sp. JA-3-3Ab 3897102 YP_473513.1 CDS CYA_0018 NC_007775.1 17166 17786 D hypothetical protein 17166..17786 Synechococcus sp. JA-3-3Ab 3897103 YP_473514.1 CDS surE NC_007775.1 17769 18500 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(17769..18500) Synechococcus sp. JA-3-3Ab 3897104 YP_473515.1 CDS gap-1 NC_007775.1 18689 19720 D identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 18689..19720 Synechococcus sp. JA-3-3Ab 3897105 YP_473516.1 CDS folK NC_007775.1 19706 20212 R identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(19706..20212) Synechococcus sp. JA-3-3Ab 3897106 YP_473517.1 CDS folB NC_007775.1 20219 20590 R identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; dihydroneopterin aldolase complement(20219..20590) Synechococcus sp. JA-3-3Ab 3897107 YP_473518.1 CDS folP NC_007775.1 20577 21446 R identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase complement(20577..21446) Synechococcus sp. JA-3-3Ab 3897108 YP_473519.1 CDS CYA_0023 NC_007775.1 21788 21895 R hypothetical protein complement(21788..21895) Synechococcus sp. JA-3-3Ab 3897109 YP_473520.1 CDS CYA_0024 NC_007775.1 22084 23175 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(22084..23175) Synechococcus sp. JA-3-3Ab 3897653 YP_473521.1 CDS rumA NC_007775.1 23329 24723 R identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF03602; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA complement(23329..24723) Synechococcus sp. JA-3-3Ab 3897654 YP_473522.1 CDS CYA_0026 NC_007775.1 24911 26074 R identified by match to protein family HMM PF04932; O-antigen polymerase family protein complement(24911..26074) Synechococcus sp. JA-3-3Ab 3897655 YP_473523.1 CDS CYA_0027 NC_007775.1 26202 26567 R identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008; ferredoxin, 2Fe-2S complement(26202..26567) Synechococcus sp. JA-3-3Ab 3897656 YP_473524.1 CDS CYA_0028 NC_007775.1 26693 27145 D identified by match to protein family HMM PF01050; match to protein family HMM PF07883; mannose-6-phosphate isomerase 26693..27145 Synechococcus sp. JA-3-3Ab 3897657 YP_473525.1 CDS CYA_0029 NC_007775.1 27153 29534 R identified by match to protein family HMM PF01435; M48B family peptidase complement(27153..29534) Synechococcus sp. JA-3-3Ab 3897658 YP_473526.1 CDS CYA_0030 NC_007775.1 29715 30161 R identified by match to protein family HMM PF01475; FUR family transcriptional regulator complement(29715..30161) Synechococcus sp. JA-3-3Ab 3897659 YP_473527.1 CDS CYA_0031 NC_007775.1 30488 30868 D identified by similarity to PIR:AC2234; hypothetical protein 30488..30868 Synechococcus sp. JA-3-3Ab 3897660 YP_473528.1 CDS CYA_0032 NC_007775.1 30915 32189 D identified by match to protein family HMM PF02113; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 30915..32189 Synechococcus sp. JA-3-3Ab 3897661 YP_473529.1 CDS CYA_0034 NC_007775.1 32567 33220 D identified by match to protein family HMM PF01169; hypothetical protein 32567..33220 Synechococcus sp. JA-3-3Ab 3897663 YP_473530.1 CDS psaL-1 NC_007775.1 33590 34060 D identified by match to protein family HMM PF02605; photosystem I reaction center protein subunit XI 33590..34060 Synechococcus sp. JA-3-3Ab 3897664 YP_473531.1 CDS psaI NC_007775.1 34110 34223 D identified by match to protein family HMM PF00796; photosystem I reaction center subunit VIII 34110..34223 Synechococcus sp. JA-3-3Ab 3897665 YP_473532.1 CDS CYA_0037 NC_007775.1 34557 34955 D identified by similarity to PIR:AD2038; ISSoc4, transposase orfA 34557..34955 Synechococcus sp. JA-3-3Ab 3897666 YP_473533.1 CDS CYA_0038 NC_007775.1 34937 35488 D identified by similarity to PIR:AI1851; ISSoc4, transposase orfB 34937..35488 Synechococcus sp. JA-3-3Ab 3897667 YP_473534.1 CDS CYA_0039 NC_007775.1 35581 37047 R hypothetical protein complement(35581..37047) Synechococcus sp. JA-3-3Ab 3897668 YP_473535.1 CDS CYA_0041 NC_007775.1 37430 38884 D identified by similarity to SP:P23462; match to protein family HMM PF03209; match to protein family HMM PF07690; bacteriochlorophyll delivery (BCD) family transporter 37430..38884 Synechococcus sp. JA-3-3Ab 3897669 YP_473536.1 CDS CYA_0040 NC_007775.1 38881 39174 R hypothetical protein complement(38881..39174) Synechococcus sp. JA-3-3Ab 3897670 YP_473537.1 CDS CYA_0042 NC_007775.1 39584 41692 D identified by match to protein family HMM PF00400; WD domain-/G-beta repeat-containing protein 39584..41692 Synechococcus sp. JA-3-3Ab 3897671 YP_473538.1 CDS CYA_0043 NC_007775.1 41742 43040 D identified by match to protein family HMM PF01266; match to protein family HMM PF01593; amine oxidase, flavin-containing 41742..43040 Synechococcus sp. JA-3-3Ab 3897749 YP_473539.1 CDS CYA_0044 NC_007775.1 43128 43799 D hypothetical protein 43128..43799 Synechococcus sp. JA-3-3Ab 3897750 YP_473540.1 CDS CYA_0045 NC_007775.1 43925 44719 D hypothetical protein 43925..44719 Synechococcus sp. JA-3-3Ab 3897751 YP_473541.1 CDS mnmA NC_007775.1 44778 45890 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(44778..45890) Synechococcus sp. JA-3-3Ab 3897752 YP_473542.1 CDS CYA_0047 NC_007775.1 45989 46711 R identified by match to protein family HMM PF03130; HEAT repeat-containing PBS lyase complement(45989..46711) Synechococcus sp. JA-3-3Ab 3897753 YP_473543.1 CDS CYA_0048 NC_007775.1 46915 47829 D hypothetical protein 46915..47829 Synechococcus sp. JA-3-3Ab 3897754 YP_473544.1 CDS CYA_0049 NC_007775.1 48013 48570 R identified by similarity to GB:BAC89600.1; hypothetical protein complement(48013..48570) Synechococcus sp. JA-3-3Ab 3897755 YP_473545.1 CDS CYA_0050 NC_007775.1 48908 49837 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 48908..49837 Synechococcus sp. JA-3-3Ab 3897756 YP_473546.1 CDS CYA_0051 NC_007775.1 49892 51004 R identified by similarity to SP:P42063; match to protein family HMM PF00528; oligopeptide ABC transporter permease complement(49892..51004) Synechococcus sp. JA-3-3Ab 3897757 YP_473547.1 CDS CYA_0054 NC_007775.1 50663 51715 D hypothetical protein 50663..51715 Synechococcus sp. JA-3-3Ab 3897758 YP_473548.1 CDS CYA_0052 NC_007775.1 51170 51670 R identified by similarity to PIR:AE2426; hypothetical protein complement(51170..51670) Synechococcus sp. JA-3-3Ab 3897759 YP_473549.1 CDS CYA_0053 NC_007775.1 51700 52647 R identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfAB complement(51700..52647) Synechococcus sp. JA-3-3Ab 3897760 YP_473550.1 CDS selD NC_007775.1 52802 53860 R identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476; selenide, water dikinase complement(52802..53860) Synechococcus sp. JA-3-3Ab 3897761 YP_473551.1 CDS dnaE NC_007775.1 53979 57464 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 53979..57464 Synechococcus sp. JA-3-3Ab 3897762 YP_473552.1 CDS CYA_0056 NC_007775.1 57450 57725 R identified by match to protein family HMM PF05768; glutaredoxin family protein complement(57450..57725) Synechococcus sp. JA-3-3Ab 3897763 YP_473553.1 CDS CYA_0058 NC_007775.1 57735 58562 R identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase complement(57735..58562) Synechococcus sp. JA-3-3Ab 3897764 YP_473554.1 CDS CYA_0059 NC_007775.1 58599 58820 R hypothetical protein complement(58599..58820) Synechococcus sp. JA-3-3Ab 3897765 YP_473555.1 CDS CYA_0060 NC_007775.1 59052 59795 R hypothetical protein complement(59052..59795) Synechococcus sp. JA-3-3Ab 3897766 YP_473556.1 CDS CYA_0061 NC_007775.1 59792 60373 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(59792..60373) Synechococcus sp. JA-3-3Ab 3897767 YP_473557.1 CDS CYA_0062 NC_007775.1 60603 61409 R lipoprotein complement(60603..61409) Synechococcus sp. JA-3-3Ab 3897729 YP_473558.1 CDS CYA_0063 NC_007775.1 61552 61668 R hypothetical protein complement(61552..61668) Synechococcus sp. JA-3-3Ab 3897730 YP_473559.1 CDS CYA_0064 NC_007775.1 61714 62496 R identified by match to protein family HMM PF06182; hypothetical protein complement(61714..62496) Synechococcus sp. JA-3-3Ab 3897731 YP_473560.1 CDS CYA_0065 NC_007775.1 62514 63257 R identified by similarity to PIR:AB2146; hypothetical protein complement(62514..63257) Synechococcus sp. JA-3-3Ab 3897732 YP_473561.1 CDS CYA_0066 NC_007775.1 63306 63791 R identified by match to protein family HMM PF00498; FHA domain-containing protein complement(63306..63791) Synechococcus sp. JA-3-3Ab 3897733 YP_473562.1 CDS CYA_0068 NC_007775.1 65283 65759 D identified by match to protein family HMM PF01797; ISSoc3, orfA transposase 65283..65759 Synechococcus sp. JA-3-3Ab 3897735 YP_473563.1 CDS CYA_0069 NC_007775.1 66081 66722 D identified by similarity to PIR:AH1812; hypothetical protein 66081..66722 Synechococcus sp. JA-3-3Ab 3897736 YP_473564.1 CDS CYA_0070 NC_007775.1 66762 67652 D hypothetical protein 66762..67652 Synechococcus sp. JA-3-3Ab 3897737 YP_473565.1 CDS chlP NC_007775.1 68588 69808 D identified by match to protein family HMM PF01494; match to protein family HMM TIGR02023; match to protein family HMM TIGR02028; match to protein family HMM TIGR02032; geranylgeranyl reductase 68588..69808 Synechococcus sp. JA-3-3Ab 3897739 YP_473566.1 CDS CYA_0073 NC_007775.1 69815 70660 R hypothetical protein complement(69815..70660) Synechococcus sp. JA-3-3Ab 3897740 YP_473567.1 CDS secD NC_007775.1 71021 72367 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 71021..72367 Synechococcus sp. JA-3-3Ab 3897741 YP_473568.1 CDS secF NC_007775.1 72364 73359 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 72364..73359 Synechococcus sp. JA-3-3Ab 3897742 YP_473569.1 CDS CYA_0076 NC_007775.1 73398 75167 R hypothetical protein complement(73398..75167) Synechococcus sp. JA-3-3Ab 3897743 YP_473570.1 CDS murF NC_007775.1 75903 77240 D identified by similarity to SP:P96613; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 75903..77240 Synechococcus sp. JA-3-3Ab 3897744 YP_473571.1 CDS CYA_0078 NC_007775.1 77338 77559 D identified by similarity to GB:BAC90887.1; hypothetical protein 77338..77559 Synechococcus sp. JA-3-3Ab 3897745 YP_473572.1 CDS CYA_0079 NC_007775.1 77913 78449 D identified by match to protein family HMM PF02469; fasciclin domain-containing protein 77913..78449 Synechococcus sp. JA-3-3Ab 3897746 YP_473573.1 CDS CYA_0080 NC_007775.1 78557 79003 R hypothetical protein complement(78557..79003) Synechococcus sp. JA-3-3Ab 3897747 YP_473574.1 CDS menD NC_007775.1 79112 80905 D SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 79112..80905 Synechococcus sp. JA-3-3Ab 3897748 YP_473575.1 CDS miaA NC_007775.1 80829 81851 R identified by similarity to SP:P16384; match to protein family HMM PF01715; match to protein family HMM TIGR00174; tRNA delta(2)-isopentenylpyrophosphate transferase complement(80829..81851) Synechococcus sp. JA-3-3Ab 3897110 YP_473576.1 CDS CYA_0083 NC_007775.1 82003 82824 D identified by similarity to GB:BAC90495.1; hypothetical protein 82003..82824 Synechococcus sp. JA-3-3Ab 3897111 YP_473577.1 CDS rpe NC_007775.1 82982 83692 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(82982..83692) Synechococcus sp. JA-3-3Ab 3897112 YP_473578.1 CDS CYA_0085 NC_007775.1 83852 84037 R hypothetical protein complement(83852..84037) Synechococcus sp. JA-3-3Ab 3897113 YP_473579.1 CDS CYA_0086 NC_007775.1 84185 84595 D identified by match to protein family HMM PF00903; glyoxalase family protein 84185..84595 Synechococcus sp. JA-3-3Ab 3897114 YP_473580.1 CDS CYA_0088 NC_007775.1 84592 86178 D identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; carbohydrate kinase family protein 84592..86178 Synechococcus sp. JA-3-3Ab 3897115 YP_473581.1 CDS CYA_0087 NC_007775.1 86175 87005 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(86175..87005) Synechococcus sp. JA-3-3Ab 3897116 YP_473582.1 CDS CYA_0089 NC_007775.1 87209 87829 R identified by similarity to GB:BAC92187.1; hypothetical protein complement(87209..87829) Synechococcus sp. JA-3-3Ab 3897117 YP_473583.1 CDS CYA_0090 NC_007775.1 88002 88187 R identified by match to protein family HMM PF01737; hypothetical protein complement(88002..88187) Synechococcus sp. JA-3-3Ab 3897118 YP_473584.1 CDS CYA_0091 NC_007775.1 88306 89487 R identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase complement(88306..89487) Synechococcus sp. JA-3-3Ab 3897119 YP_473585.1 CDS CYA_0092 NC_007775.1 89675 90367 R identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697; hypothetical protein complement(89675..90367) Synechococcus sp. JA-3-3Ab 3897120 YP_473586.1 CDS CYA_0093 NC_007775.1 90367 91023 R identified by match to protein family HMM PF00072; response regulator complement(90367..91023) Synechococcus sp. JA-3-3Ab 3897121 YP_473587.1 CDS CYA_0094 NC_007775.1 91262 92380 D identified by match to protein family HMM PF01209; UbiE/COQ5 family methlytransferase 91262..92380 Synechococcus sp. JA-3-3Ab 3897122 YP_473588.1 CDS CYA_0095 NC_007775.1 92497 92991 D hypothetical protein 92497..92991 Synechococcus sp. JA-3-3Ab 3897123 YP_473589.1 CDS CYA_0096 NC_007775.1 93105 93449 D identified by similarity to PIR:AH1833; hypothetical protein 93105..93449 Synechococcus sp. JA-3-3Ab 3897124 YP_473590.1 CDS CYA_0097 NC_007775.1 93643 95199 D identified by match to protein family HMM PF07690; major facilitator transporter 93643..95199 Synechococcus sp. JA-3-3Ab 3897125 YP_473591.1 CDS CYA_0098 NC_007775.1 95249 95350 D hypothetical protein 95249..95350 Synechococcus sp. JA-3-3Ab 3897126 YP_473592.1 CDS CYA_0099 NC_007775.1 95382 96572 D identified by match to protein family HMM PF00534; group 1 glycosyl transferase 95382..96572 Synechococcus sp. JA-3-3Ab 3897127 YP_473593.1 CDS CYA_0100 NC_007775.1 96917 98413 D identified by match to protein family HMM PF01590; match to protein family HMM PF07228; GAF/SpoIIE domain-containing protein 96917..98413 Synechococcus sp. JA-3-3Ab 3897128 YP_473594.1 CDS CYA_0102 NC_007775.1 98507 98725 D hypothetical protein 98507..98725 Synechococcus sp. JA-3-3Ab 3897860 YP_473595.1 CDS CYA_0101 NC_007775.1 98709 98816 R hypothetical protein complement(98709..98816) Synechococcus sp. JA-3-3Ab 3897861 YP_473596.1 CDS argH NC_007775.1 98857 100326 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 98857..100326 Synechococcus sp. JA-3-3Ab 3897862 YP_473597.1 CDS CYA_0104 NC_007775.1 100418 101038 D hypothetical protein 100418..101038 Synechococcus sp. JA-3-3Ab 3897863 YP_473598.1 CDS CYA_0105 NC_007775.1 101454 101705 D hypothetical protein 101454..101705 Synechococcus sp. JA-3-3Ab 3897864 YP_473599.1 CDS CYA_0107 NC_007775.1 101922 103049 D identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 101922..103049 Synechococcus sp. JA-3-3Ab 3897865 YP_473600.1 CDS CYA_0106 NC_007775.1 103038 103166 R hypothetical protein complement(103038..103166) Synechococcus sp. JA-3-3Ab 3897866 YP_473601.1 CDS CYA_0108 NC_007775.1 103453 103701 R hypothetical protein complement(103453..103701) Synechococcus sp. JA-3-3Ab 3897867 YP_473602.1 CDS ftsZ NC_007775.1 104219 105340 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 104219..105340 Synechococcus sp. JA-3-3Ab 3897868 YP_473603.1 CDS ddlB NC_007775.1 105410 106381 D identified by similarity to SP:P07862; match to protein family HMM PF01820; match to protein family HMM PF07478; match to protein family HMM TIGR01205; D-alanine--D-alanine ligase 105410..106381 Synechococcus sp. JA-3-3Ab 3897869 YP_473604.1 CDS CYA_0111 NC_007775.1 106401 106871 R hypothetical protein complement(106401..106871) Synechococcus sp. JA-3-3Ab 3897870 YP_473605.1 CDS chlM NC_007775.1 107039 107704 D catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine; Mg-protoporphyrin IX methyl transferase 107039..107704 Synechococcus sp. JA-3-3Ab 3897871 YP_473606.1 CDS CYA_0113 NC_007775.1 107756 108475 R identified by match to protein family HMM PF02985; match to protein family HMM PF03130; HEAT repeat-containing PBS lyase complement(107756..108475) Synechococcus sp. JA-3-3Ab 3897872 YP_473607.1 CDS CYA_0114 NC_007775.1 108623 109369 R identified by similarity to SP:P35137; match to protein family HMM PF00160; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(108623..109369) Synechococcus sp. JA-3-3Ab 3897873 YP_473608.1 CDS CYA_0115 NC_007775.1 109442 110236 R hypothetical protein complement(109442..110236) Synechococcus sp. JA-3-3Ab 3897874 YP_473609.1 CDS CYA_0116 NC_007775.1 110298 111221 R identified by similarity to PIR:S76405; match to protein family HMM PF07466; hypothetical protein complement(110298..111221) Synechococcus sp. JA-3-3Ab 3897875 YP_473610.1 CDS CYA_0117 NC_007775.1 111443 113350 D identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein 111443..113350 Synechococcus sp. JA-3-3Ab 3897876 YP_473611.1 CDS cbiD NC_007775.1 113491 114609 R Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase complement(113491..114609) Synechococcus sp. JA-3-3Ab 3897877 YP_473612.1 CDS CYA_0119 NC_007775.1 114833 115186 D identified by similarity to GB:BAC88346.1; hypothetical protein 114833..115186 Synechococcus sp. JA-3-3Ab 3897878 YP_473613.1 CDS def NC_007775.1 115188 115784 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(115188..115784) Synechococcus sp. JA-3-3Ab 3897879 YP_473614.1 CDS CYA_0121 NC_007775.1 116244 116555 R identified by similarity to GB:BAD78811.1; hypothetical protein complement(116244..116555) Synechococcus sp. JA-3-3Ab 3898643 YP_473615.1 CDS CYA_0122 NC_007775.1 116559 116885 R identified by similarity to PIR:AD2369; hypothetical protein complement(116559..116885) Synechococcus sp. JA-3-3Ab 3898644 YP_473616.1 CDS CYA_0123 NC_007775.1 116885 117061 R phycobilisome degradation family protein complement(116885..117061) Synechococcus sp. JA-3-3Ab 3898645 YP_473617.1 CDS CYA_0124 NC_007775.1 117159 117344 R hypothetical protein complement(117159..117344) Synechococcus sp. JA-3-3Ab 3898646 YP_473618.1 CDS CYA_0125 NC_007775.1 117441 117692 D identified by match to protein family HMM PF00076; RNA-binding protein 117441..117692 Synechococcus sp. JA-3-3Ab 3898647 YP_473619.1 CDS CYA_0126 NC_007775.1 117811 119115 D identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619; nuclease SbcCD subunit D 117811..119115 Synechococcus sp. JA-3-3Ab 3898648 YP_473620.1 CDS CYA_0127 NC_007775.1 119457 119702 D identified by similarity to GB:BAB50217.1; match to protein family HMM PF04226; hypothetical protein 119457..119702 Synechococcus sp. JA-3-3Ab 3898649 YP_473621.1 CDS speA NC_007775.1 119962 121887 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(119962..121887) Synechococcus sp. JA-3-3Ab 3898650 YP_473622.1 CDS pstS-1 NC_007775.1 122379 123428 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975; phosphate ABC transporter, phosphate-binding protein 122379..123428 Synechococcus sp. JA-3-3Ab 3898651 YP_473623.1 CDS dnaK NC_007775.1 123678 125564 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 123678..125564 Synechococcus sp. JA-3-3Ab 3898652 YP_473624.1 CDS CYA_0132 NC_007775.1 125763 126731 D identified by match to protein family HMM PF00226; match to protein family HMM PF01556; DnaJ family protein 125763..126731 Synechococcus sp. JA-3-3Ab 3898653 YP_473625.1 CDS CYA_0131 NC_007775.1 126728 128053 R identified by match to protein family HMM PF00037; match to protein family HMM PF02754; glycolate oxidase, iron-sulfur subunit complement(126728..128053) Synechococcus sp. JA-3-3Ab 3898654 YP_473626.1 CDS CYA_0134 NC_007775.1 128274 128594 D identified by similarity to GB:BAC91314.1; hypothetical protein 128274..128594 Synechococcus sp. JA-3-3Ab 3898655 YP_473627.1 CDS CYA_0133 NC_007775.1 128591 130471 R identified by similarity to GB:BAD78814.1; match to protein family HMM PF00501; long-chain-fatty-acid-CoA ligase-like protein complement(128591..130471) Synechococcus sp. JA-3-3Ab 3898656 YP_473628.1 CDS cas2-1 NC_007775.1 130865 131179 R identified by match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein complement(130865..131179) Synechococcus sp. JA-3-3Ab 3898657 YP_473630.1 CDS CYA_0137 NC_007775.1 131558 133147 R hypothetical protein complement(131558..133147) Synechococcus sp. JA-3-3Ab 3898659 YP_473631.1 CDS CYA_0138 NC_007775.1 134068 134361 R hypothetical protein complement(134068..134361) Synechococcus sp. JA-3-3Ab 3898660 YP_473632.1 CDS CYA_0139 NC_007775.1 134674 135246 R identified by match to protein family HMM PF05685; hypothetical protein complement(134674..135246) Synechococcus sp. JA-3-3Ab 3898661 YP_473633.1 CDS CYA_0140 NC_007775.1 135265 135906 R identified by similarity to PIR:AE2046; match to protein family HMM PF05685; hypothetical protein complement(135265..135906) Synechococcus sp. JA-3-3Ab 3897806 YP_473634.1 CDS CYA_0142 NC_007775.1 136943 137164 R CAB/ELIP/HLIP family protein complement(136943..137164) Synechococcus sp. JA-3-3Ab 3897808 YP_473635.1 CDS ilvA NC_007775.1 137266 138777 R threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase complement(137266..138777) Synechococcus sp. JA-3-3Ab 3897809 YP_473636.1 CDS CYA_0144 NC_007775.1 138937 139419 D identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase family protein 138937..139419 Synechococcus sp. JA-3-3Ab 3897810 YP_473637.1 CDS CYA_0145 NC_007775.1 139456 140352 R identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase complement(139456..140352) Synechococcus sp. JA-3-3Ab 3897811 YP_473638.1 CDS CYA_0146 NC_007775.1 140472 141203 D identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; WecB/TagA/CpsF family glycosyl transferase 140472..141203 Synechococcus sp. JA-3-3Ab 3897812 YP_473639.1 CDS ftsE NC_007775.1 141729 142415 D identified by similarity to SP:P10115; match to protein family HMM PF00005; match to protein family HMM TIGR02673; cell division ATP-binding protein FtsE 141729..142415 Synechococcus sp. JA-3-3Ab 3897813 YP_473640.1 CDS metE-1 NC_007775.1 142592 144856 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(142592..144856) Synechococcus sp. JA-3-3Ab 3897814 YP_473641.1 CDS CYA_0149 NC_007775.1 145761 147386 D identified by match to protein family HMM PF00496; peptide/opine/nickel ABC transporter substrate-binding protein 145761..147386 Synechococcus sp. JA-3-3Ab 3897815 YP_473642.1 CDS CYA_0150 NC_007775.1 147371 148372 D identified by similarity to SP:P42062; match to protein family HMM PF00528; peptide/opine/nickel ABC transporter permease 147371..148372 Synechococcus sp. JA-3-3Ab 3897816 YP_473643.1 CDS CYA_0151 NC_007775.1 148369 149262 D identified by similarity to SP:P26904; match to protein family HMM PF00528; peptide/opine/nickel ABC transporter permease 148369..149262 Synechococcus sp. JA-3-3Ab 3897817 YP_473644.1 CDS CYA_0152 NC_007775.1 149267 150196 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; peptide/opine/nickel uptake ABC transporter ATP-binding protein 149267..150196 Synechococcus sp. JA-3-3Ab 3897818 YP_473645.1 CDS CYA_0153 NC_007775.1 150183 150857 D identified by similarity to GB:AAC67221.1; match to protein family HMM PF00005; peptide/opine/nickel uptake ABC transporter ATP-binding protein 150183..150857 Synechococcus sp. JA-3-3Ab 3897819 YP_473646.1 CDS CYA_0154 NC_007775.1 150950 151867 D identified by match to protein family HMM PF02687; permease 150950..151867 Synechococcus sp. JA-3-3Ab 3897820 YP_473647.1 CDS CYA_0155 NC_007775.1 151961 152200 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 151961..152200 Synechococcus sp. JA-3-3Ab 3897821 YP_473648.1 CDS CYA_0156 NC_007775.1 152388 152861 R identified by match to protein family HMM PF01797; ISSoc3, orfA transposase complement(152388..152861) Synechococcus sp. JA-3-3Ab 3897822 YP_473649.1 CDS CYA_0158 NC_007775.1 152817 154088 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc3, orfB transposase 152817..154088 Synechococcus sp. JA-3-3Ab 3897823 YP_473650.1 CDS CYA_0157 NC_007775.1 154078 154842 R identified by match to protein family HMM PF00924; small conductance mechanosensitive ion channel (MscS) family protein complement(154078..154842) Synechococcus sp. JA-3-3Ab 3897824 YP_473651.1 CDS cax NC_007775.1 154882 156000 R identified by match to protein family HMM PF01699; match to protein family HMM TIGR00378; calcium/proton exchanger complement(154882..156000) Synechococcus sp. JA-3-3Ab 3897825 YP_473652.1 CDS CYA_0160 NC_007775.1 156188 156946 R identified by similarity to PIR:AB2317; hypothetical protein complement(156188..156946) Synechococcus sp. JA-3-3Ab 3897768 YP_473653.1 CDS coaBC NC_007775.1 157001 158224 R catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(157001..158224) Synechococcus sp. JA-3-3Ab 3897769 YP_473654.1 CDS CYA_0162 NC_007775.1 158574 158942 D identified by similarity to PIR:AB2066; hypothetical protein 158574..158942 Synechococcus sp. JA-3-3Ab 3897770 YP_473655.1 CDS CYA_0163 NC_007775.1 159202 159990 D hypothetical protein 159202..159990 Synechococcus sp. JA-3-3Ab 3897771 YP_473656.1 CDS CYA_0165 NC_007775.1 159947 161716 D identified by similarity to GB:BAC09647.1; match to protein family HMM PF01935; hypothetical protein 159947..161716 Synechococcus sp. JA-3-3Ab 3897772 YP_473657.1 CDS ubiH NC_007775.1 161686 162930 R Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(161686..162930) Synechococcus sp. JA-3-3Ab 3897773 YP_473658.1 CDS CYA_0166 NC_007775.1 162933 163925 R identified by match to protein family HMM PF02353; cyclopropane-fatty-acyl-phospholipid synthase family protein complement(162933..163925) Synechococcus sp. JA-3-3Ab 3897774 YP_473659.1 CDS metE-2 NC_007775.1 164140 166383 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(164140..166383) Synechococcus sp. JA-3-3Ab 3897775 YP_473660.1 CDS moaE NC_007775.1 167117 167602 R identified by match to protein family HMM PF02391; molybdopterin converting factor subunit 2 complement(167117..167602) Synechococcus sp. JA-3-3Ab 3897777 YP_473661.1 CDS CYA_0170 NC_007775.1 167603 167866 R identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682; molybdopterin converting factor subunit 1 complement(167603..167866) Synechococcus sp. JA-3-3Ab 3897778 YP_473662.1 CDS moaC NC_007775.1 167841 168935 R identified by match to protein family HMM PF01967; match to protein family HMM TIGR00581; bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA complement(167841..168935) Synechococcus sp. JA-3-3Ab 3897779 YP_473663.1 CDS moaA NC_007775.1 168940 169878 R identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666; molybdenum cofactor biosynthesis protein A complement(168940..169878) Synechococcus sp. JA-3-3Ab 3897780 YP_473664.1 CDS moeA NC_007775.1 169880 171043 R identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis protein MoeA complement(169880..171043) Synechococcus sp. JA-3-3Ab 3897781 YP_473665.1 CDS CYA_0174 NC_007775.1 171021 171494 R identified by similarity to GB:BAD78799.1; match to protein family HMM TIGR02664; hypothetical protein complement(171021..171494) Synechococcus sp. JA-3-3Ab 3897782 YP_473666.1 CDS CYA_0177 NC_007775.1 174066 174407 D identified by similarity to PIR:S70530; pilin domain-containing protein 174066..174407 Synechococcus sp. JA-3-3Ab 3897784 YP_473667.1 CDS pyrC NC_007775.1 174653 175975 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 174653..175975 Synechococcus sp. JA-3-3Ab 3897785 YP_473668.1 CDS CYA_0179 NC_007775.1 176347 176748 D identified by similarity to GB:BAD71865.1; hypothetical protein 176347..176748 Synechococcus sp. JA-3-3Ab 3897149 YP_473669.1 CDS clpB NC_007775.1 176758 179400 R identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; ATP-dependent chaperone protein ClpB complement(176758..179400) Synechococcus sp. JA-3-3Ab 3897150 YP_473670.1 CDS zam NC_007775.1 179593 181878 R identified by similarity to SP:Q46363; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; acetazolamide conferring resistance protein Zam complement(179593..181878) Synechococcus sp. JA-3-3Ab 3897151 YP_473671.1 CDS phoU NC_007775.1 181936 182577 R identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system regulatory protein PhoU complement(181936..182577) Synechococcus sp. JA-3-3Ab 3897152 YP_473672.1 CDS CYA_0183 NC_007775.1 182785 184113 D identified by similarity to PIR:AG2237; hypothetical protein 182785..184113 Synechococcus sp. JA-3-3Ab 3897153 YP_473673.1 CDS CYA_0185 NC_007775.1 184130 185644 D identified by match to protein family HMM PF01266; match to protein family HMM PF01494; oxidoreductase, FAD-binding 184130..185644 Synechococcus sp. JA-3-3Ab 3897154 YP_473674.1 CDS treZ NC_007775.1 185641 187449 R identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402; malto-oligosyltrehalose trehalohydrolase complement(185641..187449) Synechococcus sp. JA-3-3Ab 3897155 YP_473675.1 CDS CYA_0186 NC_007775.1 187712 187861 R hypothetical protein complement(187712..187861) Synechococcus sp. JA-3-3Ab 3897156 YP_473676.1 CDS CYA_0187 NC_007775.1 187888 188067 D hypothetical protein 187888..188067 Synechococcus sp. JA-3-3Ab 3897157 YP_473677.1 CDS rpsU NC_007775.1 188130 188315 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(188130..188315) Synechococcus sp. JA-3-3Ab 3897158 YP_473678.1 CDS CYA_0189 NC_007775.1 188402 189658 R identified by match to protein family HMM PF00089; match to protein family HMM PF05738; trypsin domain-containing lipoprotein complement(188402..189658) Synechococcus sp. JA-3-3Ab 3897159 YP_473679.1 CDS CYA_0192 NC_007775.1 190539 190877 D identified by similarity to GB:BAD02092.1; hypothetical protein 190539..190877 Synechococcus sp. JA-3-3Ab 3897161 YP_473680.1 CDS dxr NC_007775.1 191016 192194 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 191016..192194 Synechococcus sp. JA-3-3Ab 3897162 YP_473681.1 CDS CYA_0194 NC_007775.1 192254 194020 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; heavy metal ABC transporter (HMT) family permease/ATP-binding protein 192254..194020 Synechococcus sp. JA-3-3Ab 3897163 YP_473682.1 CDS murE NC_007775.1 194111 195700 D identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01085; UDP-N-acetylmuramyl tripeptide synthetase 194111..195700 Synechococcus sp. JA-3-3Ab 3897164 YP_473683.1 CDS carA NC_007775.1 195697 196884 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(195697..196884) Synechococcus sp. JA-3-3Ab 3897165 YP_473684.1 CDS CYA_0197 NC_007775.1 196981 197532 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; pilin complement(196981..197532) Synechococcus sp. JA-3-3Ab 3897166 YP_473685.1 CDS CYA_0198 NC_007775.1 197547 198674 R identified by similarity to SP:Q00517; match to protein family HMM PF07963; match to protein family HMM TIGR02532; PddD domain-containing protein complement(197547..198674) Synechococcus sp. JA-3-3Ab 3897167 YP_473686.1 CDS CYA_0199 NC_007775.1 198731 199495 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prepilin-type N-terminal cleavage/methylation domain-containing protein complement(198731..199495) Synechococcus sp. JA-3-3Ab 3897168 YP_473687.1 CDS CYA_0200 NC_007775.1 199553 206794 R hypothetical protein complement(199553..206794) Synechococcus sp. JA-3-3Ab 3897692 YP_473688.1 CDS CYA_0201 NC_007775.1 206915 207511 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; DNA-binding response regulator complement(206915..207511) Synechococcus sp. JA-3-3Ab 3897693 YP_473689.1 CDS CYA_0202 NC_007775.1 207609 208199 R identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein complement(207609..208199) Synechococcus sp. JA-3-3Ab 3897694 YP_473690.1 CDS mutM NC_007775.1 208311 209162 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(208311..209162) Synechococcus sp. JA-3-3Ab 3897695 YP_473691.1 CDS psaE NC_007775.1 209208 209429 R Stabilizes the interaction between PsaC and the photosystem I core; photosystem I reaction center subunit IV complement(209208..209429) Synechococcus sp. JA-3-3Ab 3897696 YP_473692.1 CDS CYA_0205 NC_007775.1 209709 209861 D CAB/ELIP/HLIP family protein 209709..209861 Synechococcus sp. JA-3-3Ab 3897697 YP_473693.1 CDS nadE NC_007775.1 210133 211803 R identified by match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552; NAD+ synthetase complement(210133..211803) Synechococcus sp. JA-3-3Ab 3897698 YP_473694.1 CDS uvrC NC_007775.1 211884 213749 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(211884..213749) Synechococcus sp. JA-3-3Ab 3897699 YP_473695.1 CDS CYA_0208 NC_007775.1 214082 216415 R identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; 1A family penicillin-binding protein complement(214082..216415) Synechococcus sp. JA-3-3Ab 3897700 YP_473696.1 CDS CYA_0209 NC_007775.1 216419 218263 R identified by match to protein family HMM PF00069; serine/threonine protein kinase complement(216419..218263) Synechococcus sp. JA-3-3Ab 3897701 YP_473697.1 CDS CYA_0210 NC_007775.1 218206 218337 R hypothetical protein complement(218206..218337) Synechococcus sp. JA-3-3Ab 3897702 YP_473698.1 CDS CYA_0211 NC_007775.1 218392 219309 D identified by match to protein family HMM PF00850; histone deacetylase family protein 218392..219309 Synechococcus sp. JA-3-3Ab 3897703 YP_473699.1 CDS CYA_0212 NC_007775.1 219321 220040 R identified by match to protein family HMM PF00481; protein phosphatase 2C family protein complement(219321..220040) Synechococcus sp. JA-3-3Ab 3897704 YP_473700.1 CDS CYA_0213 NC_007775.1 220040 221776 R identified by match to protein family HMM PF03109; hypothetical protein complement(220040..221776) Synechococcus sp. JA-3-3Ab 3897705 YP_473701.1 CDS CYA_0214 NC_007775.1 221773 222084 R hypothetical protein complement(221773..222084) Synechococcus sp. JA-3-3Ab 3897706 YP_473702.1 CDS cpcG1 NC_007775.1 222224 222949 R identified by similarity to SP:P29986; match to protein family HMM PF00427; phycobilisome rod-core linker polypeptide cpcG1 complement(222224..222949) Synechococcus sp. JA-3-3Ab 3897707 YP_473703.1 CDS cpcF NC_007775.1 222992 223708 R identified by match to protein family HMM PF02985; match to protein family HMM PF03130; phycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit complement(222992..223708) Synechococcus sp. JA-3-3Ab 3897708 YP_473704.1 CDS cpcE-1 NC_007775.1 223721 224473 R identified by match to protein family HMM PF02985; match to protein family HMM PF03130; phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit complement(223721..224473) Synechococcus sp. JA-3-3Ab 3897709 YP_473705.1 CDS cpcD NC_007775.1 224564 224824 R identified by similarity to SP:P31966; match to protein family HMM PF01383; phycobilisome 8.9 kDa linker polypeptide, phycocyanin-associated, rod complement(224564..224824) Synechococcus sp. JA-3-3Ab 3897710 YP_473706.1 CDS CYA_0219 NC_007775.1 224962 225054 R hypothetical protein complement(224962..225054) Synechococcus sp. JA-3-3Ab 3897169 YP_473707.1 CDS cpcA-1 NC_007775.1 225113 225601 R identified by similarity to SP:P07121; match to protein family HMM PF00502; phycocyanin subunit alpha complement(225113..225601) Synechococcus sp. JA-3-3Ab 3897170 YP_473708.1 CDS cpcB-1 NC_007775.1 225749 226267 R identified by match to protein family HMM PF00502; match to protein family HMM TIGR01339; phycocyanin subunit beta complement(225749..226267) Synechococcus sp. JA-3-3Ab 3897171 YP_473709.1 CDS CYA_0222 NC_007775.1 226300 226515 D hypothetical protein 226300..226515 Synechococcus sp. JA-3-3Ab 3897172 YP_473710.1 CDS trpA NC_007775.1 226682 227497 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(226682..227497) Synechococcus sp. JA-3-3Ab 3897173 YP_473711.1 CDS CYA_0224 NC_007775.1 227551 228951 R identified by match to protein family HMM PF01094; hydrophobic amino acid uptake ABC transporter amino acid-binding protein complement(227551..228951) Synechococcus sp. JA-3-3Ab 3897174 YP_473712.1 CDS CYA_0225 NC_007775.1 229067 229282 R hypothetical protein complement(229067..229282) Synechococcus sp. JA-3-3Ab 3897175 YP_473713.1 CDS CYA_0226 NC_007775.1 229317 230522 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc7, transposase complement(229317..230522) Synechococcus sp. JA-3-3Ab 3897176 YP_473714.1 CDS CYA_0227 NC_007775.1 230628 231440 D identified by similarity to GB:CAC11720.1; hypothetical protein 230628..231440 Synechococcus sp. JA-3-3Ab 3897177 YP_473715.1 CDS CYA_0228 NC_007775.1 231451 231828 R identified by similarity to SP:P48243; match to protein family HMM PF00005; polar amino acid ABC transporter ATP-binding protein complement(231451..231828) Synechococcus sp. JA-3-3Ab 3897178 YP_473716.1 CDS CYA_0229 NC_007775.1 232277 232387 D hypothetical protein 232277..232387 Synechococcus sp. JA-3-3Ab 3897179 YP_473717.1 CDS gvpG NC_007775.1 232464 232709 D identified by match to protein family HMM PF05120; gas vesicle protein G 232464..232709 Synechococcus sp. JA-3-3Ab 3897180 YP_473718.1 CDS CYA_0231 NC_007775.1 232782 233399 D identified by similarity to GB:BAC89072.1; hypothetical protein 232782..233399 Synechococcus sp. JA-3-3Ab 3897181 YP_473719.1 CDS CYA_0233 NC_007775.1 233619 235439 D identified by similarity to GB:AAL85276.1; match to protein family HMM PF05670; match to protein family HMM PF05833; fibronectin-binding protein 233619..235439 Synechococcus sp. JA-3-3Ab 3897182 YP_473720.1 CDS CYA_0232 NC_007775.1 235426 236730 R identified by match to protein family HMM PF00079; peptidase inhibitor complement(235426..236730) Synechococcus sp. JA-3-3Ab 3897183 YP_473721.1 CDS CYA_0234 NC_007775.1 236956 237525 D identified by match to protein family HMM PF02643; hypothetical protein 236956..237525 Synechococcus sp. JA-3-3Ab 3897184 YP_473722.1 CDS CYA_0235 NC_007775.1 237766 239034 D identified by match to protein family HMM PF00106; bifunctional sterol desaturase/short chain dehydrogenase 237766..239034 Synechococcus sp. JA-3-3Ab 3897185 YP_473723.1 CDS CYA_0236 NC_007775.1 239220 240008 D lipoprotein 239220..240008 Synechococcus sp. JA-3-3Ab 3897186 YP_473724.1 CDS thyX NC_007775.1 240083 240940 D identified by match to protein family HMM PF02511; match to protein family HMM TIGR02170; thymidylate synthase, flavin-dependent 240083..240940 Synechococcus sp. JA-3-3Ab 3897187 YP_473725.1 CDS CYA_0238 NC_007775.1 240856 241740 D identified by similarity to GB:CAH39666.1; hypothetical protein 240856..241740 Synechococcus sp. JA-3-3Ab 3897188 YP_473726.1 CDS CYA_0239 NC_007775.1 241889 243349 D identified by match to protein family HMM PF02397; sugar transferase 241889..243349 Synechococcus sp. JA-3-3Ab 3897616 YP_473727.1 CDS purC NC_007775.1 243360 244130 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 243360..244130 Synechococcus sp. JA-3-3Ab 3897617 YP_473728.1 CDS CYA_0241 NC_007775.1 244138 245547 D hypothetical protein 244138..245547 Synechococcus sp. JA-3-3Ab 3897618 YP_473729.1 CDS CYA_0242 NC_007775.1 245744 246574 D identified by similarity to GB:BAC08994.1; hypothetical protein 245744..246574 Synechococcus sp. JA-3-3Ab 3897619 YP_473730.1 CDS hemC NC_007775.1 246676 247608 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(246676..247608) Synechococcus sp. JA-3-3Ab 3897620 YP_473731.1 CDS CYA_0244 NC_007775.1 247938 248399 D identified by similarity to PIR:AD2256; hypothetical protein 247938..248399 Synechococcus sp. JA-3-3Ab 3897621 YP_473732.1 CDS CYA_0245 NC_007775.1 248588 250033 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 248588..250033 Synechococcus sp. JA-3-3Ab 3897622 YP_473733.1 CDS ilvC NC_007775.1 250107 251099 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 250107..251099 Synechococcus sp. JA-3-3Ab 3897623 YP_473734.1 CDS serS NC_007775.1 251123 252430 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 251123..252430 Synechococcus sp. JA-3-3Ab 3897624 YP_473735.1 CDS CYA_0248 NC_007775.1 252522 252956 D identified by match to protein family HMM PF03965; BlaI/MecI/CopY family transcriptional regulator 252522..252956 Synechococcus sp. JA-3-3Ab 3897625 YP_473736.1 CDS CYA_0249 NC_007775.1 252953 253825 D hypothetical protein 252953..253825 Synechococcus sp. JA-3-3Ab 3897626 YP_473737.1 CDS ppa NC_007775.1 254428 254949 D identified by match to protein family HMM PF00719; inorganic pyrophosphatase 254428..254949 Synechococcus sp. JA-3-3Ab 3897628 YP_473738.1 CDS CYA_0252 NC_007775.1 255048 255797 D identified by match to protein family HMM PF02683; cytochrome c biogenesis membrane protein 255048..255797 Synechococcus sp. JA-3-3Ab 3897629 YP_473739.1 CDS CYA_0254 NC_007775.1 255874 257310 D identified by match to protein family HMM PF05140; cytochrome c-type biogenesis protein ResB 255874..257310 Synechococcus sp. JA-3-3Ab 3897630 YP_473740.1 CDS CYA_0253 NC_007775.1 257307 260417 R identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase complement(257307..260417) Synechococcus sp. JA-3-3Ab 3897631 YP_473741.1 CDS CYA_0255 NC_007775.1 261102 262256 D identified by match to protein family HMM PF01565; FAD-binding protein 261102..262256 Synechococcus sp. JA-3-3Ab 3897632 YP_473742.1 CDS CYA_0258 NC_007775.1 264137 265249 R identified by match to protein family HMM PF01266; oxidoreductase, FAD-binding complement(264137..265249) Synechococcus sp. JA-3-3Ab 3898081 YP_473743.1 CDS psbY NC_007775.1 265283 265435 R identified by match to protein family HMM PF06298; photosystem II protein PsbY complement(265283..265435) Synechococcus sp. JA-3-3Ab 3898082 YP_473744.1 CDS CYA_0260 NC_007775.1 265440 265550 R hypothetical protein complement(265440..265550) Synechococcus sp. JA-3-3Ab 3898083 YP_473745.1 CDS CYA_0261 NC_007775.1 265865 266866 R hypothetical protein complement(265865..266866) Synechococcus sp. JA-3-3Ab 3898084 YP_473746.1 CDS CYA_0262 NC_007775.1 267160 268629 R identified by match to protein family HMM PF04107; glutamate--cysteine ligase complement(267160..268629) Synechococcus sp. JA-3-3Ab 3898085 YP_473747.1 CDS CYA_0263 NC_007775.1 268685 270631 R identified by match to protein family HMM PF00128; alpha-amylase family protein complement(268685..270631) Synechococcus sp. JA-3-3Ab 3898086 YP_473748.1 CDS CYA_0264 NC_007775.1 270708 272060 R identified by match to protein family HMM PF01523; tldD/pmbA family protein complement(270708..272060) Synechococcus sp. JA-3-3Ab 3898087 YP_473749.1 CDS CYA_0265 NC_007775.1 272214 272795 R hypothetical protein complement(272214..272795) Synechococcus sp. JA-3-3Ab 3898088 YP_473750.1 CDS CYA_0266 NC_007775.1 272782 273051 D identified by match to protein family HMM TIGR02450; hypothetical protein 272782..273051 Synechococcus sp. JA-3-3Ab 3898089 YP_473751.1 CDS ispF NC_007775.1 273344 273817 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 273344..273817 Synechococcus sp. JA-3-3Ab 3898090 YP_473752.1 CDS CYA_0268 NC_007775.1 274000 275781 D identified by match to protein family HMM PF00496; peptide/opine/nickel ABC transporter substrate-binding protein 274000..275781 Synechococcus sp. JA-3-3Ab 3898091 YP_473753.1 CDS CYA_0269 NC_007775.1 275783 277948 R identified by match to protein family HMM PF06202; glycogen debranching enzyme family protein complement(275783..277948) Synechococcus sp. JA-3-3Ab 3898092 YP_473754.1 CDS CYA_0270 NC_007775.1 278035 279093 R identified by match to protein family HMM PF00534; glycoside hydrolase family protein complement(278035..279093) Synechococcus sp. JA-3-3Ab 3898093 YP_473755.1 CDS CYA_0271 NC_007775.1 279213 279323 R hypothetical protein complement(279213..279323) Synechococcus sp. JA-3-3Ab 3898094 YP_473756.1 CDS CYA_0272 NC_007775.1 279300 279437 D hypothetical protein 279300..279437 Synechococcus sp. JA-3-3Ab 3898095 YP_473757.1 CDS CYA_0273 NC_007775.1 279449 279994 D identified by similarity to PIR:AE2202; match to protein family HMM PF04134; hypothetical protein 279449..279994 Synechococcus sp. JA-3-3Ab 3898096 YP_473758.1 CDS CYA_0274 NC_007775.1 280033 281727 D lipoprotein 280033..281727 Synechococcus sp. JA-3-3Ab 3898097 YP_473761.1 CDS purF NC_007775.1 283490 285079 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 283490..285079 Synechococcus sp. JA-3-3Ab 3898061 YP_473762.1 CDS def-2 NC_007775.1 285108 285635 D identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079; peptide deformylase 285108..285635 Synechococcus sp. JA-3-3Ab 3898062 YP_473763.1 CDS CYA_0279 NC_007775.1 285646 286068 D identified by similarity to PIR:AE2202; match to protein family HMM PF04134; hypothetical protein 285646..286068 Synechococcus sp. JA-3-3Ab 3898063 YP_473764.1 CDS CYA_0280 NC_007775.1 286497 288758 D identified by match to protein family HMM PF02210; thrombospondin N-terminal-like domain-containing protein 286497..288758 Synechococcus sp. JA-3-3Ab 3898064 YP_473765.1 CDS CYA_0281 NC_007775.1 289017 289997 D hypothetical protein 289017..289997 Synechococcus sp. JA-3-3Ab 3898065 YP_473766.1 CDS CYA_0283 NC_007775.1 290261 291658 D identified by match to protein family HMM PF00004; AAA ATPase 290261..291658 Synechococcus sp. JA-3-3Ab 3898066 YP_473767.1 CDS ppnK NC_007775.1 291655 292578 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(291655..292578) Synechococcus sp. JA-3-3Ab 3898067 YP_473768.1 CDS CYA_0284 NC_007775.1 292733 292846 D hypothetical protein 292733..292846 Synechococcus sp. JA-3-3Ab 3898068 YP_473769.1 CDS ispE NC_007775.1 292938 293867 D catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 292938..293867 Synechococcus sp. JA-3-3Ab 3898069 YP_473770.1 CDS leuC NC_007775.1 294018 295421 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 294018..295421 Synechococcus sp. JA-3-3Ab 3898070 YP_473771.1 CDS thiD NC_007775.1 295483 296295 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(295483..296295) Synechococcus sp. JA-3-3Ab 3898071 YP_473772.1 CDS CYA_0288 NC_007775.1 296528 296728 R hypothetical protein complement(296528..296728) Synechococcus sp. JA-3-3Ab 3898072 YP_473773.1 CDS CYA_0289 NC_007775.1 296798 297106 R identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008; ferredoxin, 2Fe-2S complement(296798..297106) Synechococcus sp. JA-3-3Ab 3898073 YP_473774.1 CDS CYA_0290 NC_007775.1 297115 297372 R identified by similarity to GB:BAD80164.1; hypothetical protein complement(297115..297372) Synechococcus sp. JA-3-3Ab 3898074 YP_473775.1 CDS CYA_0291 NC_007775.1 297419 298483 R identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase complement(297419..298483) Synechococcus sp. JA-3-3Ab 3898075 YP_473776.1 CDS CYA_0292 NC_007775.1 298516 298947 R identified by match to protein family HMM PF00636; RNase3 domain-containing protein complement(298516..298947) Synechococcus sp. JA-3-3Ab 3898076 YP_473777.1 CDS psaL-2 NC_007775.1 299332 299808 R identified by match to protein family HMM PF02605; photosystem I reaction center protein subunit XI complement(299332..299808) Synechococcus sp. JA-3-3Ab 3898077 YP_473778.1 CDS psaJ NC_007775.1 299934 300053 R identified by match to protein family HMM PF01701; photosystem I reaction center subunit IX complement(299934..300053) Synechococcus sp. JA-3-3Ab 3898078 YP_473779.1 CDS psaF NC_007775.1 300113 300658 R identified by similarity to SP:P25899; match to protein family HMM PF02507; photosystem I reaction center subunit III complement(300113..300658) Synechococcus sp. JA-3-3Ab 3898079 YP_473780.1 CDS gcp NC_007775.1 300825 301925 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 300825..301925 Synechococcus sp. JA-3-3Ab 3898041 YP_473781.1 CDS gidA NC_007775.1 301889 303820 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(301889..303820) Synechococcus sp. JA-3-3Ab 3898042 YP_473782.1 CDS thrC-1 NC_007775.1 304116 305456 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 304116..305456 Synechococcus sp. JA-3-3Ab 3898043 YP_473783.1 CDS CYA_0299 NC_007775.1 305550 306074 D identified by match to protein family HMM PF02469; fasciclin domain-containing protein 305550..306074 Synechococcus sp. JA-3-3Ab 3898044 YP_473784.1 CDS CYA_0300 NC_007775.1 306111 306386 D identified by match to protein family HMM PF02597; match to protein family HMM TIGR01687; MoaD family protein 306111..306386 Synechococcus sp. JA-3-3Ab 3898045 YP_473785.1 CDS CYA_0301 NC_007775.1 306404 306991 D identified by match to protein family HMM PF02245; match to protein family HMM TIGR00567; DNA-3-methyladenine glycosylase 306404..306991 Synechococcus sp. JA-3-3Ab 3898046 YP_473786.1 CDS CYA_0302 NC_007775.1 307008 308276 D identified by similarity to PIR:H75264; hypothetical protein 307008..308276 Synechococcus sp. JA-3-3Ab 3898047 YP_473787.1 CDS CYA_0304 NC_007775.1 308636 310549 D identified by match to protein family HMM PF01436; NHL repeat-containing protein 308636..310549 Synechococcus sp. JA-3-3Ab 3898048 YP_473788.1 CDS phrB-1 NC_007775.1 310546 312012 R identified by match to protein family HMM PF00875; match to protein family HMM PF03441; match to protein family HMM TIGR02765; deoxyribodipyrimidine photolyase complement(310546..312012) Synechococcus sp. JA-3-3Ab 3898049 YP_473789.1 CDS hup-1 NC_007775.1 312014 312340 R identified by similarity to SP:P02346; match to protein family HMM PF00216; DNA-binding protein HU complement(312014..312340) Synechococcus sp. JA-3-3Ab 3898050 YP_473790.1 CDS CYA_0306 NC_007775.1 312458 312718 R identified by similarity to PIR:S36975; hypothetical protein complement(312458..312718) Synechococcus sp. JA-3-3Ab 3898051 YP_473791.1 CDS pmgA NC_007775.1 312834 313277 D identified by similarity to GB:BAA20429.1; pmgA protein 312834..313277 Synechococcus sp. JA-3-3Ab 3898052 YP_473792.1 CDS CYA_0308 NC_007775.1 313288 315018 R hypothetical protein complement(313288..315018) Synechococcus sp. JA-3-3Ab 3898053 YP_473793.1 CDS pheT NC_007775.1 315172 317649 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 315172..317649 Synechococcus sp. JA-3-3Ab 3898054 YP_473794.1 CDS argB NC_007775.1 317853 318755 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 317853..318755 Synechococcus sp. JA-3-3Ab 3898055 YP_473795.1 CDS CYA_0311 NC_007775.1 318965 320803 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease 318965..320803 Synechococcus sp. JA-3-3Ab 3898056 YP_473796.1 CDS CYA_0312 NC_007775.1 321183 321554 D identified by similarity to GB:BAD79291.1; hypothetical protein 321183..321554 Synechococcus sp. JA-3-3Ab 3898057 YP_473797.1 CDS CYA_0313 NC_007775.1 321745 323256 D identified by match to protein family HMM PF00004; AAA ATPase 321745..323256 Synechococcus sp. JA-3-3Ab 3898058 YP_473798.1 CDS CYA_0314 NC_007775.1 323388 323738 D identified by similarity to GB:BAC09429.1; match to protein family HMM PF06868; hypothetical protein 323388..323738 Synechococcus sp. JA-3-3Ab 3898059 YP_473799.1 CDS pgk NC_007775.1 323857 325095 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(323857..325095) Synechococcus sp. JA-3-3Ab 3898060 YP_473800.1 CDS pds NC_007775.1 325273 326691 D identified by similarity to SP:P26294; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02731; phytoene desaturase 325273..326691 Synechococcus sp. JA-3-3Ab 3898022 YP_473801.1 CDS crtB NC_007775.1 326768 327703 D identified by similarity to SP:P37294; match to protein family HMM PF00494; phytoene synthase 326768..327703 Synechococcus sp. JA-3-3Ab 3898023 YP_473802.1 CDS CYA_0319 NC_007775.1 327727 328542 D identified by match to protein family HMM PF01061; ABC-2 transporter, permease 327727..328542 Synechococcus sp. JA-3-3Ab 3898024 YP_473803.1 CDS CYA_0318 NC_007775.1 328539 333596 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase complement(328539..333596) Synechococcus sp. JA-3-3Ab 3898025 YP_473804.1 CDS CYA_0320 NC_007775.1 333689 333895 R hypothetical protein complement(333689..333895) Synechococcus sp. JA-3-3Ab 3898026 YP_473805.1 CDS CYA_0321 NC_007775.1 333924 338501 R identified by match to protein family HMM PF04480; hypothetical protein complement(333924..338501) Synechococcus sp. JA-3-3Ab 3898027 YP_473806.1 CDS CYA_0322 NC_007775.1 338498 341392 R identified by match to protein family HMM PF00271; helicase complement(338498..341392) Synechococcus sp. JA-3-3Ab 3898028 YP_473807.1 CDS CYA_0323 NC_007775.1 341673 342188 D identified by match to protein family HMM PF00027; cyclic nucleotide-binding protein, trunction 341673..342188 Synechococcus sp. JA-3-3Ab 3898029 YP_473808.1 CDS gap-2 NC_007775.1 342373 343392 D identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 342373..343392 Synechococcus sp. JA-3-3Ab 3898030 YP_473809.1 CDS CYA_0324 NC_007775.1 343377 343979 R identified by match to protein family HMM PF02834; 2',5' RNA ligase complement(343377..343979) Synechococcus sp. JA-3-3Ab 3898031 YP_473810.1 CDS CYA_0327 NC_007775.1 344149 344571 D identified by similarity to PIR:JC7085; ferredoxin-like protein 344149..344571 Synechococcus sp. JA-3-3Ab 3898032 YP_473811.1 CDS CYA_0326 NC_007775.1 344559 345191 R identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(344559..345191) Synechococcus sp. JA-3-3Ab 3898033 YP_473812.1 CDS CYA_0329 NC_007775.1 346459 347148 R identified by match to protein family HMM PF05685; hypothetical protein complement(346459..347148) Synechococcus sp. JA-3-3Ab 3898035 YP_473813.1 CDS CYA_0330 NC_007775.1 347318 348421 D identified by match to protein family HMM PF01266; FAD-dependent oxidoreductase 347318..348421 Synechococcus sp. JA-3-3Ab 3898036 YP_473814.1 CDS CYA_0331 NC_007775.1 348529 348828 D identified by match to protein family HMM PF04839; hypothetical protein 348529..348828 Synechococcus sp. JA-3-3Ab 3898037 YP_473815.1 CDS groEL NC_007775.1 349032 350660 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth; chaperonin GroEL 349032..350660 Synechococcus sp. JA-3-3Ab 3898038 YP_473816.1 CDS lysS NC_007775.1 350698 352224 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(350698..352224) Synechococcus sp. JA-3-3Ab 3898039 YP_473817.1 CDS CYA_0334 NC_007775.1 352271 353185 R identified by similarity to PIR:AC2464; match to protein family HMM PF05685; hypothetical protein complement(352271..353185) Synechococcus sp. JA-3-3Ab 3898040 YP_473818.1 CDS radA NC_007775.1 353548 354966 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(353548..354966) Synechococcus sp. JA-3-3Ab 3898003 YP_473819.1 CDS aroC NC_007775.1 355019 356155 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(355019..356155) Synechococcus sp. JA-3-3Ab 3898004 YP_473820.1 CDS CYA_0337 NC_007775.1 356210 356944 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(356210..356944) Synechococcus sp. JA-3-3Ab 3898005 YP_473821.1 CDS CYA_0338 NC_007775.1 356934 357665 R identified by similarity to SP:Q8R8N9; match to protein family HMM PF01871; hypothetical protein complement(356934..357665) Synechococcus sp. JA-3-3Ab 3898006 YP_473822.1 CDS trpB NC_007775.1 357668 358867 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(357668..358867) Synechococcus sp. JA-3-3Ab 3898007 YP_473823.1 CDS CYA_0340 NC_007775.1 359124 359483 D identified by similarity to GB:BAD01972.1; hypothetical protein 359124..359483 Synechococcus sp. JA-3-3Ab 3898008 YP_473824.1 CDS CYA_0341 NC_007775.1 359627 360145 D identified by similarity to GB:BAB48108.1; hypothetical protein 359627..360145 Synechococcus sp. JA-3-3Ab 3898009 YP_473825.1 CDS CYA_0342 NC_007775.1 360158 360754 D identified by similarity to GB:BAC91744.1; hypothetical protein 360158..360754 Synechococcus sp. JA-3-3Ab 3898010 YP_473826.1 CDS CYA_0343 NC_007775.1 360754 362295 D identified by match to protein family HMM PF00012; DnaK family protein 360754..362295 Synechococcus sp. JA-3-3Ab 3898011 YP_473827.1 CDS CYA_0344 NC_007775.1 362387 362509 D hypothetical protein 362387..362509 Synechococcus sp. JA-3-3Ab 3898012 YP_473828.1 CDS CYA_0345 NC_007775.1 362789 364069 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase complement(362789..364069) Synechococcus sp. JA-3-3Ab 3898013 YP_473829.1 CDS CYA_0346 NC_007775.1 363924 364541 R identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase complement(363924..364541) Synechococcus sp. JA-3-3Ab 3898014 YP_473830.1 CDS CYA_0347 NC_007775.1 364609 364743 R hypothetical protein complement(364609..364743) Synechococcus sp. JA-3-3Ab 3898015 YP_473831.1 CDS CYA_0348 NC_007775.1 365438 366295 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 365438..366295 Synechococcus sp. JA-3-3Ab 3898016 YP_473832.1 CDS CYA_0349 NC_007775.1 366346 368466 D identified by match to protein family HMM PF00580; UvrD/REP helicase domain-containing protein 366346..368466 Synechococcus sp. JA-3-3Ab 3898017 YP_473833.1 CDS nusB NC_007775.1 368586 369452 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 368586..369452 Synechococcus sp. JA-3-3Ab 3898018 YP_473834.1 CDS CYA_0352 NC_007775.1 370022 370573 D identified by match to protein family HMM PF03358; NADPH-dependent FMN reductase 370022..370573 Synechococcus sp. JA-3-3Ab 3898020 YP_473835.1 CDS CYA_0353 NC_007775.1 370637 371056 R lipoprotein complement(370637..371056) Synechococcus sp. JA-3-3Ab 3898021 YP_473836.1 CDS CYA_0355 NC_007775.1 371225 372874 D hypothetical protein 371225..372874 Synechococcus sp. JA-3-3Ab 3897965 YP_473837.1 CDS CYA_0354 NC_007775.1 372868 374061 R identified by similarity to GB:CAA43914.1; match to protein family HMM PF00534; glycoside hydrolase family protein complement(372868..374061) Synechococcus sp. JA-3-3Ab 3897966 YP_473838.1 CDS CYA_0356 NC_007775.1 374064 374477 R identified by similarity to GB:BAD78263.1; hypothetical protein complement(374064..374477) Synechococcus sp. JA-3-3Ab 3897967 YP_473839.1 CDS CYA_0357 NC_007775.1 374567 375007 R hypothetical protein complement(374567..375007) Synechococcus sp. JA-3-3Ab 3897968 YP_473840.1 CDS CYA_0358 NC_007775.1 375090 375971 R identified by match to protein family HMM PF00520; match to protein family HMM PF07885; cation transporter, voltage-gated ion channel cation transporter complement(375090..375971) Synechococcus sp. JA-3-3Ab 3897969 YP_473841.1 CDS maf NC_007775.1 376112 376705 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 376112..376705 Synechococcus sp. JA-3-3Ab 3897970 YP_473842.1 CDS gatB NC_007775.1 376702 378174 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(376702..378174) Synechococcus sp. JA-3-3Ab 3897971 YP_473843.1 CDS CYA_0361 NC_007775.1 378240 378395 R identified by similarity to PIR:AB1916; hypothetical protein complement(378240..378395) Synechococcus sp. JA-3-3Ab 3897972 YP_473844.1 CDS CYA_0362 NC_007775.1 378672 378827 R identified by match to protein family HMM PF00708; acylphosphatase complement(378672..378827) Synechococcus sp. JA-3-3Ab 3897973 YP_473845.1 CDS CYA_0363 NC_007775.1 378824 379144 R hypothetical protein complement(378824..379144) Synechococcus sp. JA-3-3Ab 3897974 YP_473846.1 CDS CYA_0364 NC_007775.1 379184 380626 D catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 379184..380626 Synechococcus sp. JA-3-3Ab 3897975 YP_473847.1 CDS chlD NC_007775.1 380752 382770 D identified by match to protein family HMM PF01078; match to protein family HMM TIGR02031; magnesium chelatase, ATPase subunit D 380752..382770 Synechococcus sp. JA-3-3Ab 3897976 YP_473848.1 CDS CYA_0366 NC_007775.1 382852 383601 D identified by similarity to PIR:AC2382; hypothetical protein 382852..383601 Synechococcus sp. JA-3-3Ab 3897977 YP_473849.1 CDS CYA_0367 NC_007775.1 383965 384408 R identified by match to protein family HMM PF00903; glyoxalase family protein complement(383965..384408) Synechococcus sp. JA-3-3Ab 3897978 YP_473850.1 CDS mreB NC_007775.1 384547 385575 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 384547..385575 Synechococcus sp. JA-3-3Ab 3897979 YP_473851.1 CDS mreC NC_007775.1 385636 386379 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 385636..386379 Synechococcus sp. JA-3-3Ab 3897980 YP_473852.1 CDS mreD NC_007775.1 386366 386995 D identified by match to protein family HMM PF04093; rod shape-determining protein MreD 386366..386995 Synechococcus sp. JA-3-3Ab 3897981 YP_473853.1 CDS CYA_0371 NC_007775.1 387283 387510 D identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 387283..387510 Synechococcus sp. JA-3-3Ab 3897982 YP_473854.1 CDS CYA_0372 NC_007775.1 387549 388073 R hypothetical protein complement(387549..388073) Synechococcus sp. JA-3-3Ab 3897983 YP_473855.1 CDS CYA_0373 NC_007775.1 388505 390457 R identified by similarity to GB:AAD42859.1; match to protein family HMM PF00069; match to protein family HMM PF07719; serine/threonine protein kinase complement(388505..390457) Synechococcus sp. JA-3-3Ab 3897945 YP_473856.1 CDS CYA_0375 NC_007775.1 390588 391445 D identified by match to protein family HMM PF00459; inositol monophosphate family protein 390588..391445 Synechococcus sp. JA-3-3Ab 3897946 YP_473857.1 CDS CYA_0374 NC_007775.1 391400 392383 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(391400..392383) Synechococcus sp. JA-3-3Ab 3897947 YP_473858.1 CDS hemE NC_007775.1 392445 393533 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(392445..393533) Synechococcus sp. JA-3-3Ab 3897948 YP_473859.1 CDS crtE NC_007775.1 393758 394651 D identified by similarity to GB:BAA82613.1; match to protein family HMM PF00348; geranylgeranyl diphosphate synthase 393758..394651 Synechococcus sp. JA-3-3Ab 3897949 YP_473860.1 CDS CYA_0378 NC_007775.1 394648 395193 D identified by similarity to GB:BAC07572.1; match to protein family HMM PF02681; hypothetical protein 394648..395193 Synechococcus sp. JA-3-3Ab 3897950 YP_473861.1 CDS CYA_0379 NC_007775.1 395236 395853 D hypothetical protein 395236..395853 Synechococcus sp. JA-3-3Ab 3897951 YP_473862.1 CDS CYA_0380 NC_007775.1 395885 396721 D identified by similarity to SP:Q9PD85; hypothetical protein 395885..396721 Synechococcus sp. JA-3-3Ab 3897952 YP_473863.1 CDS CYA_0381 NC_007775.1 396773 397039 R identified by similarity to GB:BAC09330.1; hypothetical protein complement(396773..397039) Synechococcus sp. JA-3-3Ab 3897953 YP_473864.1 CDS CYA_0383 NC_007775.1 397453 398280 D identified by similarity to PIR:S75306; match to protein family HMM PF07082; hypothetical protein 397453..398280 Synechococcus sp. JA-3-3Ab 3897954 YP_473865.1 CDS CYA_0382 NC_007775.1 398277 398516 R identified by similarity to PIR:AI2167; hypothetical protein complement(398277..398516) Synechococcus sp. JA-3-3Ab 3897955 YP_473866.1 CDS CYA_0384 NC_007775.1 398920 399153 D hypothetical protein 398920..399153 Synechococcus sp. JA-3-3Ab 3897956 YP_473867.1 CDS CYA_0385 NC_007775.1 399356 400294 R hypothetical protein complement(399356..400294) Synechococcus sp. JA-3-3Ab 3897957 YP_473868.1 CDS ribD NC_007775.1 400816 401931 R identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD complement(400816..401931) Synechococcus sp. JA-3-3Ab 3897958 YP_473869.1 CDS pgi NC_007775.1 402053 403651 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 402053..403651 Synechococcus sp. JA-3-3Ab 3897959 YP_473870.1 CDS opcA NC_007775.1 403771 404922 D identified by match to protein family HMM TIGR00534; opcA protein 403771..404922 Synechococcus sp. JA-3-3Ab 3897960 YP_473871.1 CDS CYA_0389 NC_007775.1 405100 405408 R identified by similarity to SP:P54225; CAB/ELIP/HLIP family protein complement(405100..405408) Synechococcus sp. JA-3-3Ab 3897961 YP_473872.1 CDS CYA_0390 NC_007775.1 405519 405737 R CAB/ELIP/HLIP family protein complement(405519..405737) Synechococcus sp. JA-3-3Ab 3897962 YP_473873.1 CDS CYA_0391 NC_007775.1 405906 407195 D identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979; SufS family cysteine desulfurase 405906..407195 Synechococcus sp. JA-3-3Ab 3897963 YP_473874.1 CDS CYA_0392 NC_007775.1 407196 408311 D identified by match to protein family HMM PF00037; match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 407196..408311 Synechococcus sp. JA-3-3Ab 3897964 YP_473875.1 CDS CYA_0393 NC_007775.1 408404 408787 R hypothetical protein complement(408404..408787) Synechococcus sp. JA-3-3Ab 3897907 YP_473876.1 CDS CYA_0394 NC_007775.1 408911 409588 D hypothetical protein 408911..409588 Synechococcus sp. JA-3-3Ab 3897908 YP_473877.1 CDS CYA_0396 NC_007775.1 409596 410339 D identified by similarity to GB:BAC89907.1; hypothetical protein 409596..410339 Synechococcus sp. JA-3-3Ab 3897909 YP_473878.1 CDS CYA_0395 NC_007775.1 410293 411573 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase complement(410293..411573) Synechococcus sp. JA-3-3Ab 3897910 YP_473879.1 CDS CYA_0397 NC_007775.1 411428 412021 R identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase complement(411428..412021) Synechococcus sp. JA-3-3Ab 3897911 YP_473880.1 CDS tpiA NC_007775.1 412218 412985 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 412218..412985 Synechococcus sp. JA-3-3Ab 3897912 YP_473881.1 CDS treY NC_007775.1 412991 415792 R identified by match to protein family HMM PF00128; match to protein family HMM TIGR02401; malto-oligosyltrehalose synthase complement(412991..415792) Synechococcus sp. JA-3-3Ab 3897913 YP_473882.1 CDS CYA_0400 NC_007775.1 415943 416356 D hypothetical protein 415943..416356 Synechococcus sp. JA-3-3Ab 3897914 YP_473883.1 CDS CYA_0401 NC_007775.1 416555 417418 D identified by match to protein family HMM PF01435; M48A family peptidase 416555..417418 Synechococcus sp. JA-3-3Ab 3897915 YP_473884.1 CDS CYA_0402 NC_007775.1 417443 418339 D identified by match to protein family HMM PF00294; PfkB family kinase 417443..418339 Synechococcus sp. JA-3-3Ab 3897916 YP_473885.1 CDS CYA_0403 NC_007775.1 418343 420067 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease complement(418343..420067) Synechococcus sp. JA-3-3Ab 3897917 YP_473886.1 CDS CYA_0404 NC_007775.1 420172 420726 R hypothetical protein complement(420172..420726) Synechococcus sp. JA-3-3Ab 3897918 YP_473887.1 CDS panE-1 NC_007775.1 420789 421748 R catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase complement(420789..421748) Synechococcus sp. JA-3-3Ab 3897919 YP_473888.1 CDS pyrR NC_007775.1 421806 422360 R identified by similarity to SP:P39765; match to protein family HMM PF00156; pyrR bifunctional protein complement(421806..422360) Synechococcus sp. JA-3-3Ab 3897920 YP_473889.1 CDS CYA_0407 NC_007775.1 422501 423031 D identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 422501..423031 Synechococcus sp. JA-3-3Ab 3897921 YP_473890.1 CDS CYA_0408 NC_007775.1 423116 423829 R identified by match to protein family HMM PF01126; heme oxygenase complement(423116..423829) Synechococcus sp. JA-3-3Ab 3897922 YP_473891.1 CDS rpoB NC_007775.1 424423 427824 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 424423..427824 Synechococcus sp. JA-3-3Ab 3897923 YP_473892.1 CDS rpoC1 NC_007775.1 427924 429807 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; DNA-directed RNA polymerase subunit gamma 427924..429807 Synechococcus sp. JA-3-3Ab 3897924 YP_473893.1 CDS rpoC2 NC_007775.1 429897 433805 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 429897..433805 Synechococcus sp. JA-3-3Ab 3897925 YP_473894.1 CDS CYA_0412 NC_007775.1 433786 434304 D uracil-DNA glycosylase family protein 433786..434304 Synechococcus sp. JA-3-3Ab 3897887 YP_473895.1 CDS CYA_0413 NC_007775.1 434337 434996 R identified by similarity to SP:P25052; match to protein family HMM PF03070; transcriptional activator TenA complement(434337..434996) Synechococcus sp. JA-3-3Ab 3897888 YP_473896.1 CDS CYA_0414 NC_007775.1 435204 436229 R identified by similarity to GB:BAC91086.1; hypothetical protein complement(435204..436229) Synechococcus sp. JA-3-3Ab 3897889 YP_473897.1 CDS CYA_0415 NC_007775.1 436363 437094 R identified by similarity to GB:BAC91087.1; hypothetical protein complement(436363..437094) Synechococcus sp. JA-3-3Ab 3897890 YP_473898.1 CDS CYA_0416 NC_007775.1 437251 437646 R hypothetical protein complement(437251..437646) Synechococcus sp. JA-3-3Ab 3897891 YP_473899.1 CDS CYA_0417 NC_007775.1 437290 437601 D hypothetical protein 437290..437601 Synechococcus sp. JA-3-3Ab 3897892 YP_473900.1 CDS CYA_0418 NC_007775.1 437609 438103 R identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein complement(437609..438103) Synechococcus sp. JA-3-3Ab 3897893 YP_473901.1 CDS gvpV NC_007775.1 438313 438606 D identified by similarity to GB:CAE11908.1; gas vesicle protein V 438313..438606 Synechococcus sp. JA-3-3Ab 3897894 YP_473902.1 CDS atpD NC_007775.1 438981 440414 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 438981..440414 Synechococcus sp. JA-3-3Ab 3897895 YP_473903.1 CDS CYA_0421 NC_007775.1 440425 441165 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(440425..441165) Synechococcus sp. JA-3-3Ab 3897896 YP_473904.1 CDS CYA_0422 NC_007775.1 441169 442080 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole methylase family protein complement(441169..442080) Synechococcus sp. JA-3-3Ab 3897897 YP_473905.1 CDS CYA_0423 NC_007775.1 442169 442621 D identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; transcriptional regulator 442169..442621 Synechococcus sp. JA-3-3Ab 3897898 YP_473906.1 CDS cobD-1 NC_007775.1 442644 443633 D identified by match to protein family HMM PF03186; match to protein family HMM TIGR00380; cobalamin biosynthesis protein CobD 442644..443633 Synechococcus sp. JA-3-3Ab 3897899 YP_473907.1 CDS CYA_0425 NC_007775.1 443916 444200 R hypothetical protein complement(443916..444200) Synechococcus sp. JA-3-3Ab 3897900 YP_473908.1 CDS CYA_0426 NC_007775.1 444197 444757 R hypothetical protein complement(444197..444757) Synechococcus sp. JA-3-3Ab 3897901 YP_473909.1 CDS rca NC_007775.1 444839 446062 R identified by similarity to SP:Q06721; match to protein family HMM PF00004; match to protein family HMM PF00101; ribulose bisphosphate carboxylase/oxygenase activase complement(444839..446062) Synechococcus sp. JA-3-3Ab 3897902 YP_473910.1 CDS CYA_0428 NC_007775.1 446370 447848 D identified by similarity to GB:BAA10332.1; match to protein family HMM PF00999; high-affinity Na+/H+ antiporter 446370..447848 Synechococcus sp. JA-3-3Ab 3897903 YP_473911.1 CDS CYA_0429 NC_007775.1 447850 448440 R identified by match to protein family HMM PF00498; FHA domain-containing protein complement(447850..448440) Synechococcus sp. JA-3-3Ab 3897904 YP_473912.1 CDS CYA_0430 NC_007775.1 448546 448764 D identified by similarity to PIR:S76577; hypothetical protein 448546..448764 Synechococcus sp. JA-3-3Ab 3897905 YP_473913.1 CDS CYA_0431 NC_007775.1 448795 449529 D hypothetical protein 448795..449529 Synechococcus sp. JA-3-3Ab 3897906 YP_473914.1 CDS CYA_0432 NC_007775.1 449651 450451 D hypothetical protein 449651..450451 Synechococcus sp. JA-3-3Ab 3897559 YP_473915.1 CDS CYA_0433 NC_007775.1 450616 450858 D hypothetical protein 450616..450858 Synechococcus sp. JA-3-3Ab 3897560 YP_473916.1 CDS CYA_0434 NC_007775.1 451199 454399 R identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(451199..454399) Synechococcus sp. JA-3-3Ab 3897561 YP_473917.1 CDS CYA_0435 NC_007775.1 454467 455750 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(454467..455750) Synechococcus sp. JA-3-3Ab 3897562 YP_473918.1 CDS CYA_0436 NC_007775.1 455921 457171 R identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc6, orfB transposase complement(455921..457171) Synechococcus sp. JA-3-3Ab 3897563 YP_473919.1 CDS CYA_0437 NC_007775.1 457222 457626 D identified by similarity to PIR:AD2227; match to protein family HMM PF01797; ISSoc6, orfA transposase 457222..457626 Synechococcus sp. JA-3-3Ab 3897564 YP_473920.1 CDS CYA_0438 NC_007775.1 457780 458628 D hypothetical protein 457780..458628 Synechococcus sp. JA-3-3Ab 3897565 YP_473921.1 CDS CYA_0439 NC_007775.1 458677 459972 R hypothetical protein complement(458677..459972) Synechococcus sp. JA-3-3Ab 3897566 YP_473922.1 CDS CYA_0440 NC_007775.1 460003 461085 R hypothetical protein complement(460003..461085) Synechococcus sp. JA-3-3Ab 3897567 YP_473923.1 CDS CYA_0441 NC_007775.1 461090 461983 R identified by match to protein family HMM PF00892; hypothetical protein complement(461090..461983) Synechococcus sp. JA-3-3Ab 3897568 YP_473924.1 CDS CYA_0442 NC_007775.1 461983 462321 R identified by similarity to GB:CAD14216.1; hypothetical protein complement(461983..462321) Synechococcus sp. JA-3-3Ab 3897569 YP_473925.1 CDS CYA_0443 NC_007775.1 462386 462718 R hypothetical protein complement(462386..462718) Synechococcus sp. JA-3-3Ab 3897570 YP_473926.1 CDS CYA_0444 NC_007775.1 462769 463866 R M8 family peptidase complement(462769..463866) Synechococcus sp. JA-3-3Ab 3897571 YP_473927.1 CDS CYA_0445 NC_007775.1 464359 464856 R hypothetical protein complement(464359..464856) Synechococcus sp. JA-3-3Ab 3897572 YP_473928.1 CDS CYA_0446 NC_007775.1 465017 465163 R hypothetical protein complement(465017..465163) Synechococcus sp. JA-3-3Ab 3897573 YP_473929.1 CDS CYA_0447 NC_007775.1 465509 467716 D identified by match to protein family HMM PF02779; match to protein family HMM PF03894; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase family protein 465509..467716 Synechococcus sp. JA-3-3Ab 3897574 YP_473930.1 CDS CYA_0448 NC_007775.1 467763 469085 D identified by match to protein family HMM PF01656; CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein 467763..469085 Synechococcus sp. JA-3-3Ab 3897575 YP_473931.1 CDS CYA_0449 NC_007775.1 469078 469722 D identified by similarity to PIR:S76694; hypothetical protein 469078..469722 Synechococcus sp. JA-3-3Ab 3897576 YP_473932.1 CDS CYA_0450 NC_007775.1 469759 470304 R identified by similarity to PIR:AC1932; hypothetical protein complement(469759..470304) Synechococcus sp. JA-3-3Ab 3897577 YP_473933.1 CDS CYA_0452 NC_007775.1 470548 470958 R identified by match to protein family HMM PF01724; hypothetical protein complement(470548..470958) Synechococcus sp. JA-3-3Ab 3897501 YP_473934.1 CDS CYA_0453 NC_007775.1 470890 471030 D hypothetical protein 470890..471030 Synechococcus sp. JA-3-3Ab 3897502 YP_473935.1 CDS CYA_0454 NC_007775.1 471065 471580 R identified by match to protein family HMM TIGR02652; hypothetical protein complement(471065..471580) Synechococcus sp. JA-3-3Ab 3897503 YP_473936.1 CDS CYA_0455 NC_007775.1 471577 471714 R hypothetical protein complement(471577..471714) Synechococcus sp. JA-3-3Ab 3897504 YP_473937.1 CDS CYA_0456 NC_007775.1 471902 472375 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 471902..472375 Synechococcus sp. JA-3-3Ab 3897505 YP_473938.1 CDS nusA NC_007775.1 472535 473902 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 472535..473902 Synechococcus sp. JA-3-3Ab 3897506 YP_473939.1 CDS CYA_0458 NC_007775.1 473958 474605 D identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421; aromatic acid decarboxylase 473958..474605 Synechococcus sp. JA-3-3Ab 3897507 YP_473940.1 CDS CYA_0459 NC_007775.1 474747 475817 R identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase complement(474747..475817) Synechococcus sp. JA-3-3Ab 3897508 YP_473941.1 CDS CYA_0460 NC_007775.1 476202 476321 D hypothetical protein 476202..476321 Synechococcus sp. JA-3-3Ab 3897509 YP_473942.1 CDS cobH-1 NC_007775.1 476311 476940 D catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase 476311..476940 Synechococcus sp. JA-3-3Ab 3897510 YP_473943.1 CDS CYA_0462 NC_007775.1 476947 477861 D hypothetical protein 476947..477861 Synechococcus sp. JA-3-3Ab 3897511 YP_473944.1 CDS cbiE/cbiT NC_007775.1 477862 479121 D identified by match to protein family HMM PF00590; match to protein family HMM PF02390; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiE/T subunits 477862..479121 Synechococcus sp. JA-3-3Ab 3897512 YP_473945.1 CDS CYA_0464 NC_007775.1 479156 479752 R identified by similarity to PIR:AH1835; match to protein family HMM PF01936; hypothetical protein complement(479156..479752) Synechococcus sp. JA-3-3Ab 3897513 YP_473946.1 CDS sfsA NC_007775.1 479943 480662 D Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 479943..480662 Synechococcus sp. JA-3-3Ab 3897514 YP_473947.1 CDS xth NC_007775.1 480687 481472 D identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 480687..481472 Synechococcus sp. JA-3-3Ab 3897515 YP_473948.1 CDS msrA NC_007775.1 481554 482228 D identified by similarity to SP:P27110; match to protein family HMM PF01625; match to protein family HMM TIGR00401; methionine-S-sulfoxide reductase 481554..482228 Synechococcus sp. JA-3-3Ab 3897516 YP_473949.1 CDS cysW NC_007775.1 482242 483081 R identified by similarity to SP:P27370; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140; sulfate ABC transporter, permease protein CysW complement(482242..483081) Synechococcus sp. JA-3-3Ab 3897517 YP_473950.1 CDS cysT NC_007775.1 483071 483883 R identified by similarity to SP:P27367; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139; sulfate ABC transporter, permease protein CysT complement(483071..483883) Synechococcus sp. JA-3-3Ab 3897518 YP_473951.1 CDS cysA NC_007775.1 483890 484933 R identified by similarity to SP:P14788; match to protein family HMM PF00005; match to protein family HMM TIGR00968; sulfate transport system ATP-binding protein complement(483890..484933) Synechococcus sp. JA-3-3Ab 3897481 YP_473952.1 CDS sbp NC_007775.1 485108 486127 R identified by similarity to SP:P06997; match to protein family HMM PF01547; match to protein family HMM TIGR00971; sulfate ABC transporter, sulfate-binding protein complement(485108..486127) Synechococcus sp. JA-3-3Ab 3897482 YP_473953.1 CDS CYA_0472 NC_007775.1 486236 489031 R identified by similarity to SP:P76594; match to protein family HMM PF00583; match to protein family HMM PF02629; acetyltransferase complement(486236..489031) Synechococcus sp. JA-3-3Ab 3897483 YP_473954.1 CDS adhE NC_007775.1 489057 491687 R identified by similarity to SP:P17547; match to protein family HMM PF00171; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase complement(489057..491687) Synechococcus sp. JA-3-3Ab 3897484 YP_473955.1 CDS CYA_0474 NC_007775.1 491778 492188 R identified by match to protein family HMM PF02566; OsmC family protein complement(491778..492188) Synechococcus sp. JA-3-3Ab 3897485 YP_473956.1 CDS pflA NC_007775.1 492370 493122 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493; pyruvate formate-lyase activating enzyme complement(492370..493122) Synechococcus sp. JA-3-3Ab 3897486 YP_473957.1 CDS CYA_0476 NC_007775.1 493284 493661 R identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein complement(493284..493661) Synechococcus sp. JA-3-3Ab 3897487 YP_473958.1 CDS pflB NC_007775.1 493749 496055 R identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase complement(493749..496055) Synechococcus sp. JA-3-3Ab 3897488 YP_473959.1 CDS CYA_0478 NC_007775.1 496453 497505 D identified by match to protein family HMM PF00903; 4-hydroxyphenylpyruvate dioxygenase 496453..497505 Synechococcus sp. JA-3-3Ab 3897489 YP_473960.1 CDS CYA_0479 NC_007775.1 497587 497952 R identified by match to protein family HMM PF00072; response regulator complement(497587..497952) Synechococcus sp. JA-3-3Ab 3897490 YP_473961.1 CDS CYA_0480 NC_007775.1 498264 499196 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(498264..499196) Synechococcus sp. JA-3-3Ab 3897491 YP_473962.1 CDS CYA_0481 NC_007775.1 499316 500221 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 499316..500221 Synechococcus sp. JA-3-3Ab 3897492 YP_473963.1 CDS gcvH NC_007775.1 500300 500689 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 500300..500689 Synechococcus sp. JA-3-3Ab 3897493 YP_473964.1 CDS CYA_0483 NC_007775.1 500693 501478 R identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(500693..501478) Synechococcus sp. JA-3-3Ab 3897494 YP_473965.1 CDS CYA_0484 NC_007775.1 501723 502670 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein complement(501723..502670) Synechococcus sp. JA-3-3Ab 3897495 YP_473966.1 CDS CYA_0485 NC_007775.1 502667 504085 R identified by similarity to SP:O32271; match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF03720; match to protein family HMM PF03721; UDP-glucose dehydrogenase complement(502667..504085) Synechococcus sp. JA-3-3Ab 3897496 YP_473967.1 CDS CYA_0486 NC_007775.1 504227 505141 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation transporter 504227..505141 Synechococcus sp. JA-3-3Ab 3897497 YP_473968.1 CDS CYA_0487 NC_007775.1 505488 505664 D hypothetical protein 505488..505664 Synechococcus sp. JA-3-3Ab 3897498 YP_473969.1 CDS CYA_0488 NC_007775.1 505954 506490 D identified by match to protein family HMM PF01844; HNH endonuclease domain-containing protein 505954..506490 Synechococcus sp. JA-3-3Ab 3897499 YP_473970.1 CDS CYA_0489 NC_007775.1 506500 507435 R identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase complement(506500..507435) Synechococcus sp. JA-3-3Ab 3897442 YP_473971.1 CDS ruvA NC_007775.1 507552 508166 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 507552..508166 Synechococcus sp. JA-3-3Ab 3897443 YP_473972.1 CDS nadD NC_007775.1 508163 508786 D identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482; nicotinate (nicotinamide) nucleotide adenylyltransferase 508163..508786 Synechococcus sp. JA-3-3Ab 3897444 YP_473973.1 CDS psaC NC_007775.1 508947 509195 R part of the core of the reaction center of photosystem I; photosystem I subunit VII complement(508947..509195) Synechococcus sp. JA-3-3Ab 3897445 YP_473974.1 CDS CYA_0493 NC_007775.1 509434 509811 D hypothetical protein 509434..509811 Synechococcus sp. JA-3-3Ab 3897446 YP_473975.1 CDS CYA_0494 NC_007775.1 509831 510205 R identified by similarity to PIR:AB2257; hypothetical protein complement(509831..510205) Synechococcus sp. JA-3-3Ab 3897447 YP_473976.1 CDS CYA_0495 NC_007775.1 510208 510849 R hypothetical protein complement(510208..510849) Synechococcus sp. JA-3-3Ab 3897448 YP_473977.1 CDS CYA_0496 NC_007775.1 510982 512283 R identified by similarity to SP:P07004; gamma-glutamyl phosphate reductase complement(510982..512283) Synechococcus sp. JA-3-3Ab 3897449 YP_473978.1 CDS CYA_0497 NC_007775.1 512401 512853 R hypothetical protein complement(512401..512853) Synechococcus sp. JA-3-3Ab 3897450 YP_473979.1 CDS CYA_0498 NC_007775.1 512911 514188 R hypothetical protein complement(512911..514188) Synechococcus sp. JA-3-3Ab 3897451 YP_473980.1 CDS CYA_0499 NC_007775.1 514185 515624 R identified by match to protein family HMM PF01593; hypothetical protein complement(514185..515624) Synechococcus sp. JA-3-3Ab 3897452 YP_473981.1 CDS CYA_0500 NC_007775.1 515750 516856 D identified by match to protein family HMM PF04107; match to protein family HMM TIGR02048; glutamate--cysteine ligase 515750..516856 Synechococcus sp. JA-3-3Ab 3897453 YP_473982.1 CDS CYA_0502 NC_007775.1 518175 519785 R identified by match to protein family HMM PF00582; match to protein family HMM PF00999; transporter, monovalent cation:proton antiporter-2 (CPA2) family/universal stress family protein complement(518175..519785) Synechococcus sp. JA-3-3Ab 3897455 YP_473983.1 CDS CYA_0503 NC_007775.1 520081 520668 R identified by similarity to GB:BAC91438.1; hypothetical protein complement(520081..520668) Synechococcus sp. JA-3-3Ab 3897456 YP_473984.1 CDS hisIE NC_007775.1 520709 521404 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase complement(520709..521404) Synechococcus sp. JA-3-3Ab 3897457 YP_473985.1 CDS CYA_0505 NC_007775.1 521665 523812 R identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein complement(521665..523812) Synechococcus sp. JA-3-3Ab 3897458 YP_473986.1 CDS CYA_0506 NC_007775.1 524217 524708 R identified by match to protein family HMM PF01383; phycobilisome linker polypeptide, phycocyanin-associated, rod complement(524217..524708) Synechococcus sp. JA-3-3Ab 3897459 YP_473987.1 CDS CYA_0507 NC_007775.1 524898 525431 D hypothetical protein 524898..525431 Synechococcus sp. JA-3-3Ab 3897460 YP_473990.1 CDS CYA_0510 NC_007775.1 527198 529402 D identified by match to protein family HMM PF02514; CobN/magnesium chelatase domain-containing protein 527198..529402 Synechococcus sp. JA-3-3Ab 3897424 YP_473991.1 CDS CYA_0511 NC_007775.1 529494 529808 R identified by match to protein family HMM PF00076; RNA-binding protein complement(529494..529808) Synechococcus sp. JA-3-3Ab 3897425 YP_473992.1 CDS valS NC_007775.1 530063 532801 R identified by match to protein family HMM PF00133; match to protein family HMM TIGR00422; valyl-tRNA synthetase complement(530063..532801) Synechococcus sp. JA-3-3Ab 3897426 YP_473993.1 CDS CYA_0513 NC_007775.1 532955 533377 D identified by match to protein family HMM PF00376; MerR family transcriptional regulator 532955..533377 Synechococcus sp. JA-3-3Ab 3897427 YP_473994.1 CDS CYA_0514 NC_007775.1 533412 533570 D lipoprotein 533412..533570 Synechococcus sp. JA-3-3Ab 3897428 YP_473995.1 CDS CYA_0515 NC_007775.1 533422 533835 D identified by similarity to GB:BAC09437.1; hypothetical protein 533422..533835 Synechococcus sp. JA-3-3Ab 3897429 YP_473996.1 CDS cdsA NC_007775.1 533975 534796 R identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase complement(533975..534796) Synechococcus sp. JA-3-3Ab 3897430 YP_473997.1 CDS CYA_0517 NC_007775.1 534777 534947 R hypothetical protein complement(534777..534947) Synechococcus sp. JA-3-3Ab 3897431 YP_473998.1 CDS CYA_0518 NC_007775.1 534953 535072 D hypothetical protein 534953..535072 Synechococcus sp. JA-3-3Ab 3897432 YP_473999.1 CDS CYA_0519 NC_007775.1 535116 536117 D identified by match to protein family HMM PF00676; dehydrogenase E1 component subunit alpha 535116..536117 Synechococcus sp. JA-3-3Ab 3897433 YP_474000.1 CDS CYA_0520 NC_007775.1 536338 537918 D shuttles electrons from NAD(P)H, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunit D, with NdhB and NdhF are core membrane components; NAD(P)H-quinone oxidoreductase subunit 4 536338..537918 Synechococcus sp. JA-3-3Ab 3897434 YP_474001.1 CDS CYA_0521 NC_007775.1 538113 538292 R hypothetical protein complement(538113..538292) Synechococcus sp. JA-3-3Ab 3897435 YP_474002.1 CDS CYA_0522 NC_007775.1 538610 539299 R identified by match to protein family HMM PF02830; V4R domain-containing protein complement(538610..539299) Synechococcus sp. JA-3-3Ab 3897436 YP_474003.1 CDS CYA_0523 NC_007775.1 539316 539795 R phycobilisome protein complement(539316..539795) Synechococcus sp. JA-3-3Ab 3897437 YP_474004.1 CDS CYA_0524 NC_007775.1 539818 540696 R identified by match to protein family HMM PF00502; phycobilisome protein complement(539818..540696) Synechococcus sp. JA-3-3Ab 3897438 YP_474005.1 CDS bchJ NC_007775.1 540751 541434 R identified by match to protein family HMM PF02830; bacteriochlorophyll 4-vinyl reductase complement(540751..541434) Synechococcus sp. JA-3-3Ab 3897439 YP_474006.1 CDS CYA_0526 NC_007775.1 541607 542092 R identified by match to protein family HMM PF00111; iron-sulfur cluster-binding protein complement(541607..542092) Synechococcus sp. JA-3-3Ab 3897440 YP_474007.1 CDS CYA_0528 NC_007775.1 542537 543100 D identified by match to protein family HMM PF00427; phycobilisome linker polypeptide 542537..543100 Synechococcus sp. JA-3-3Ab 3897441 YP_474008.1 CDS CYA_0527 NC_007775.1 543064 544068 R taurine ABC transporter periplasmic substrate-binding protein complement(543064..544068) Synechococcus sp. JA-3-3Ab 3897403 YP_474009.1 CDS cobA/hemD NC_007775.1 544262 545764 D identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469; uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase 544262..545764 Synechococcus sp. JA-3-3Ab 3897404 YP_474010.1 CDS menB NC_007775.1 545801 546625 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 545801..546625 Synechococcus sp. JA-3-3Ab 3897405 YP_474011.1 CDS polA NC_007775.1 546670 549456 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 546670..549456 Synechococcus sp. JA-3-3Ab 3897406 YP_474012.1 CDS grxC NC_007775.1 549522 549782 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181; glutaredoxin 3 549522..549782 Synechococcus sp. JA-3-3Ab 3897407 YP_474013.1 CDS CYA_0533 NC_007775.1 549834 550130 R identified by similarity to PIR:S75241; hypothetical protein complement(549834..550130) Synechococcus sp. JA-3-3Ab 3897408 YP_474014.1 CDS CYA_0534 NC_007775.1 550279 550806 R identified by match to protein family HMM PF01209; UbiE/COQ5 family methlytransferase complement(550279..550806) Synechococcus sp. JA-3-3Ab 3897409 YP_474015.1 CDS CYA_0535 NC_007775.1 550816 551700 R identified by match to protein family HMM PF00491; arginase family protein complement(550816..551700) Synechococcus sp. JA-3-3Ab 3897410 YP_474016.1 CDS psaD NC_007775.1 551962 552357 D identified by similarity to SP:P20452; match to protein family HMM PF02531; photosystem I reaction center subunit II 551962..552357 Synechococcus sp. JA-3-3Ab 3897411 YP_474017.1 CDS CYA_0537 NC_007775.1 552727 553335 R identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein complement(552727..553335) Synechococcus sp. JA-3-3Ab 3897412 YP_474018.1 CDS CYA_0538 NC_007775.1 553397 553501 D hypothetical protein 553397..553501 Synechococcus sp. JA-3-3Ab 3897413 YP_474019.1 CDS CYA_0539 NC_007775.1 553498 553734 D hypothetical protein 553498..553734 Synechococcus sp. JA-3-3Ab 3897414 YP_474020.1 CDS CYA_0540 NC_007775.1 553736 553993 R identified by similarity to PIR:AE2344; hypothetical protein complement(553736..553993) Synechococcus sp. JA-3-3Ab 3897415 YP_474021.1 CDS CYA_0541 NC_007775.1 553993 554184 D hypothetical protein 553993..554184 Synechococcus sp. JA-3-3Ab 3897416 YP_474022.1 CDS glpX NC_007775.1 554249 555292 D type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 554249..555292 Synechococcus sp. JA-3-3Ab 3897417 YP_474023.1 CDS hemA NC_007775.1 555611 556906 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 555611..556906 Synechococcus sp. JA-3-3Ab 3897418 YP_474024.1 CDS CYA_0544 NC_007775.1 557019 557126 D hypothetical protein 557019..557126 Synechococcus sp. JA-3-3Ab 3897419 YP_474025.1 CDS typA NC_007775.1 557310 559127 D identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA 557310..559127 Synechococcus sp. JA-3-3Ab 3897420 YP_474026.1 CDS CYA_0546 NC_007775.1 559138 561246 R hypothetical protein complement(559138..561246) Synechococcus sp. JA-3-3Ab 3897421 YP_474027.1 CDS cinA NC_007775.1 561284 562600 R identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; competence/damage-inducible protein CinA complement(561284..562600) Synechococcus sp. JA-3-3Ab 3897422 YP_474028.1 CDS CYA_0548 NC_007775.1 562722 563216 R identified by match to protein family HMM PF00583; acetyltransferase complement(562722..563216) Synechococcus sp. JA-3-3Ab 3897384 YP_474029.1 CDS CYA_0549 NC_007775.1 563304 563780 R identified by match to protein family HMM PF01797; ISSoc3, orfA transposase complement(563304..563780) Synechococcus sp. JA-3-3Ab 3897385 YP_474030.1 CDS CYA_0551 NC_007775.1 565110 565394 R hypothetical protein complement(565110..565394) Synechococcus sp. JA-3-3Ab 3897387 YP_474031.1 CDS CYA_0553 NC_007775.1 565575 566657 D identified by match to protein family HMM PF01656; match to protein family HMM PF01883; CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein 565575..566657 Synechococcus sp. JA-3-3Ab 3897388 YP_474032.1 CDS CYA_0552 NC_007775.1 566654 567022 R lipoprotein complement(566654..567022) Synechococcus sp. JA-3-3Ab 3897389 YP_474033.1 CDS CYA_0554 NC_007775.1 567087 569000 R identified by match to protein family HMM PF01103; match to protein family HMM PF07244; OMP85 family membrane protein complement(567087..569000) Synechococcus sp. JA-3-3Ab 3897390 YP_474034.1 CDS CYA_0555 NC_007775.1 569380 569727 R hypothetical protein complement(569380..569727) Synechococcus sp. JA-3-3Ab 3897391 YP_474035.1 CDS CYA_0557 NC_007775.1 570008 570109 D hypothetical protein 570008..570109 Synechococcus sp. JA-3-3Ab 3897392 YP_474036.1 CDS cysE NC_007775.1 570096 570899 R identified by similarity to SP:Q06750; match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine O-acetyltransferase complement(570096..570899) Synechococcus sp. JA-3-3Ab 3897393 YP_474037.1 CDS CYA_0558 NC_007775.1 571083 571424 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; glutaredoxin-like protein 571083..571424 Synechococcus sp. JA-3-3Ab 3897394 YP_474038.1 CDS bolA NC_007775.1 571433 571714 D identified by similarity to SP:P15298; match to protein family HMM PF01722; BolA protein 571433..571714 Synechococcus sp. JA-3-3Ab 3897395 YP_474039.1 CDS CYA_0560 NC_007775.1 572078 572428 D identified by match to protein family HMM PF04020; hypothetical protein 572078..572428 Synechococcus sp. JA-3-3Ab 3897396 YP_474040.1 CDS topA NC_007775.1 572482 575142 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(572482..575142) Synechococcus sp. JA-3-3Ab 3897397 YP_474041.1 CDS CYA_0562 NC_007775.1 575343 575762 D identified by match to protein family HMM PF00903; glyoxalase family protein 575343..575762 Synechococcus sp. JA-3-3Ab 3897398 YP_474042.1 CDS dnaX NC_007775.1 575990 578068 R identified by match to protein family HMM PF00004; match to protein family HMM PF06144; match to protein family HMM TIGR02397; DNA polymerase III subunits gamma and tau complement(575990..578068) Synechococcus sp. JA-3-3Ab 3897399 YP_474043.1 CDS CYA_0564 NC_007775.1 578157 578693 R hypothetical protein complement(578157..578693) Synechococcus sp. JA-3-3Ab 3897400 YP_474044.1 CDS coaE NC_007775.1 578722 579414 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(578722..579414) Synechococcus sp. JA-3-3Ab 3897401 YP_474045.1 CDS CYA_0566 NC_007775.1 579514 581181 R identified by match to protein family HMM PF00682; match to protein family HMM TIGR00977; alpha-isopropylmalate/homocitrate synthase family transferase complement(579514..581181) Synechococcus sp. JA-3-3Ab 3897402 YP_474046.1 CDS CYA_0567 NC_007775.1 581171 581542 R identified by similarity to GB:BAD78868.1; hypothetical protein complement(581171..581542) Synechococcus sp. JA-3-3Ab 3897364 YP_474047.1 CDS CYA_0568 NC_007775.1 581831 582655 D identified by match to protein family HMM PF00733; match to protein family HMM PF01171; match to protein family HMM TIGR00268; PP-loop family protein 581831..582655 Synechococcus sp. JA-3-3Ab 3897365 YP_474048.1 CDS CYA_0569 NC_007775.1 582703 584529 D hypothetical protein 582703..584529 Synechococcus sp. JA-3-3Ab 3897366 YP_474049.1 CDS CYA_0570 NC_007775.1 584810 585091 D identified by similarity to GB:BAC09020.1; hypothetical protein 584810..585091 Synechococcus sp. JA-3-3Ab 3897367 YP_474050.1 CDS CYA_0571 NC_007775.1 585116 585490 R lipoprotein complement(585116..585490) Synechococcus sp. JA-3-3Ab 3897368 YP_474051.1 CDS CYA_0572 NC_007775.1 585522 586202 R hypothetical protein complement(585522..586202) Synechococcus sp. JA-3-3Ab 3897369 YP_474052.1 CDS CYA_0573 NC_007775.1 586289 586831 R hypothetical protein complement(586289..586831) Synechococcus sp. JA-3-3Ab 3897370 YP_474053.1 CDS CYA_0574 NC_007775.1 587313 587771 D Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 587313..587771 Synechococcus sp. JA-3-3Ab 3897371 YP_474054.1 CDS speE NC_007775.1 587800 588738 D identified by similarity to SP:P09158; match to protein family HMM PF01564; match to protein family HMM TIGR00417; spermidine synthase 587800..588738 Synechococcus sp. JA-3-3Ab 3897372 YP_474055.1 CDS CYA_0577 NC_007775.1 588838 589989 D identified by similarity to SP:O48917; match to protein family HMM PF01370; UDP-sulfoquinovose synthase 588838..589989 Synechococcus sp. JA-3-3Ab 3897373 YP_474056.1 CDS CYA_0576 NC_007775.1 589986 590897 R identified by match to protein family HMM PF00850; histone deacetylase family protein complement(589986..590897) Synechococcus sp. JA-3-3Ab 3897374 YP_474057.1 CDS CYA_0578 NC_007775.1 590947 591267 R hypothetical protein complement(590947..591267) Synechococcus sp. JA-3-3Ab 3897375 YP_474058.1 CDS CYA_0579 NC_007775.1 591438 591608 R hypothetical protein complement(591438..591608) Synechococcus sp. JA-3-3Ab 3897376 YP_474059.1 CDS CYA_0580 NC_007775.1 591848 592186 R identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; iojap protein complement(591848..592186) Synechococcus sp. JA-3-3Ab 3897377 YP_474060.1 CDS CYA_0581 NC_007775.1 592232 592873 R identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488; HD domain-containing protein complement(592232..592873) Synechococcus sp. JA-3-3Ab 3897378 YP_474061.1 CDS lepA NC_007775.1 592866 594677 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(592866..594677) Synechococcus sp. JA-3-3Ab 3897379 YP_474062.1 CDS CYA_0583 NC_007775.1 594944 595468 R identified by similarity to GB:BAC08349.1; match to protein family HMM PF01936; hypothetical protein complement(594944..595468) Synechococcus sp. JA-3-3Ab 3897380 YP_474063.1 CDS glyQ NC_007775.1 595616 596602 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(595616..596602) Synechococcus sp. JA-3-3Ab 3897381 YP_474064.1 CDS CYA_0585 NC_007775.1 596648 597418 R T1 family peptidase complement(596648..597418) Synechococcus sp. JA-3-3Ab 3897382 YP_474065.1 CDS CYA_0586 NC_007775.1 597478 598887 R identified by match to protein family HMM PF01926; GTP-binding domain-containing protein complement(597478..598887) Synechococcus sp. JA-3-3Ab 3897383 YP_474066.1 CDS CYA_0587 NC_007775.1 599119 599403 D identified by similarity to GB:BAC09322.1; match to protein family HMM PF04248; hypothetical protein 599119..599403 Synechococcus sp. JA-3-3Ab 3897345 YP_474067.1 CDS CYA_0588 NC_007775.1 599457 600041 D identified by match to protein family HMM PF07676; Xaa-Pro aminopeptidase-like protein 599457..600041 Synechococcus sp. JA-3-3Ab 3897346 YP_474068.1 CDS CYA_0589 NC_007775.1 600076 601260 D catalyzes the formation of N-succinyl-2-L-amino-6-oxoheptanedioate and L-glutamate from N-succinyl-L-2,6-diaminoheptanedioate and 2-oxoglutarate; succinyldiaminopimelate transaminase 600076..601260 Synechococcus sp. JA-3-3Ab 3897347 YP_474069.1 CDS CYA_0590 NC_007775.1 601421 602164 D hypothetical protein 601421..602164 Synechococcus sp. JA-3-3Ab 3897348 YP_474070.1 CDS hisD NC_007775.1 602408 603721 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 602408..603721 Synechococcus sp. JA-3-3Ab 3897349 YP_474071.1 CDS CYA_0592 NC_007775.1 603885 604595 D hypothetical protein 603885..604595 Synechococcus sp. JA-3-3Ab 3897350 YP_474072.1 CDS CYA_0593 NC_007775.1 604692 604997 D identified by similarity to GB:BAC89079.1; hypothetical protein 604692..604997 Synechococcus sp. JA-3-3Ab 3897351 YP_474073.1 CDS CYA_0594 NC_007775.1 605022 606212 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; hypothetical protein 605022..606212 Synechococcus sp. JA-3-3Ab 3897352 YP_474074.1 CDS CYA_0595 NC_007775.1 606572 607189 D identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 606572..607189 Synechococcus sp. JA-3-3Ab 3897353 YP_474075.1 CDS CYA_0596 NC_007775.1 607044 608261 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 607044..608261 Synechococcus sp. JA-3-3Ab 3897354 YP_474076.1 CDS CYA_0597 NC_007775.1 608382 609281 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls the expression of genes coding cell surface proteins involved in motility and growth on nitrogen; RNA polymerase sigma factor SigF 608382..609281 Synechococcus sp. JA-3-3Ab 3897355 YP_474077.1 CDS CYA_0598 NC_007775.1 609477 610247 R hypothetical protein complement(609477..610247) Synechococcus sp. JA-3-3Ab 3897356 YP_474079.1 CDS CYA_0600 NC_007775.1 610837 611103 D hypothetical protein 610837..611103 Synechococcus sp. JA-3-3Ab 3897358 YP_474082.1 CDS ureC NC_007775.1 611850 613559 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 611850..613559 Synechococcus sp. JA-3-3Ab 3897361 YP_474083.1 CDS ureE NC_007775.1 613567 614016 D involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 613567..614016 Synechococcus sp. JA-3-3Ab 3897362 YP_474084.1 CDS ureF NC_007775.1 614023 614676 D identified by similarity to SP:Q07402; match to protein family HMM PF01730; urease accessory protein UreF 614023..614676 Synechococcus sp. JA-3-3Ab 3897363 YP_474085.1 CDS ureG NC_007775.1 614688 615296 D identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101; urease accessory protein UreG 614688..615296 Synechococcus sp. JA-3-3Ab 3897325 YP_474086.1 CDS CYA_0607 NC_007775.1 615313 616104 D urease accessory protein UreD 615313..616104 Synechococcus sp. JA-3-3Ab 3897326 YP_474087.1 CDS CYA_0609 NC_007775.1 617290 617655 D identified by similarity to PIR:AH2183; hypothetical protein 617290..617655 Synechococcus sp. JA-3-3Ab 3897328 YP_474088.1 CDS CYA_0610 NC_007775.1 618095 619252 D SCP family protein 618095..619252 Synechococcus sp. JA-3-3Ab 3897329 YP_474090.1 CDS nirA NC_007775.1 619713 621260 D ferredoxin-dependent assimilatory nitrite reductase; ferredoxin-nitrite reductase 619713..621260 Synechococcus sp. JA-3-3Ab 3897331 YP_474091.1 CDS nrtA NC_007775.1 621322 622644 D identified by similarity to SP:P38043; match to protein family HMM TIGR01409; nitrate ABC transporter nitrate-binding protein NrtA 621322..622644 Synechococcus sp. JA-3-3Ab 3897332 YP_474092.1 CDS ntrB-1 NC_007775.1 622778 623737 D identified by similarity to SP:P38044; match to protein family HMM PF00528; match to protein family HMM TIGR01183; nitrate ABC transporter permease NrtB 622778..623737 Synechococcus sp. JA-3-3Ab 3897333 YP_474093.1 CDS ntrC-1 NC_007775.1 623810 625801 D identified by similarity to SP:P73450; match to protein family HMM PF00005; match to protein family HMM TIGR01184; nitrate ABC transporter ATP-binding protein NtrC 623810..625801 Synechococcus sp. JA-3-3Ab 3897334 YP_474094.1 CDS ntrD-1 NC_007775.1 625840 626682 D identified by similarity to SP:P38046; match to protein family HMM PF00005; match to protein family HMM TIGR01184; nitrate ABC transporter ATP-binding protein NtrD 625840..626682 Synechococcus sp. JA-3-3Ab 3897335 YP_474095.1 CDS CYA_0618 NC_007775.1 626716 627132 D hypothetical protein 626716..627132 Synechococcus sp. JA-3-3Ab 3897336 YP_474096.1 CDS CYA_0617 NC_007775.1 627118 627213 R hypothetical protein complement(627118..627213) Synechococcus sp. JA-3-3Ab 3897337 YP_474097.1 CDS narB NC_007775.1 627358 629493 D identified by similarity to SP:P73448; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; nitrate reductase 627358..629493 Synechococcus sp. JA-3-3Ab 3897338 YP_474098.1 CDS CYA_0621 NC_007775.1 629518 630009 D identified by similarity to GB:BAD78799.1; match to protein family HMM TIGR02664; hypothetical protein 629518..630009 Synechococcus sp. JA-3-3Ab 3897339 YP_474099.1 CDS CYA_0620 NC_007775.1 629981 631174 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase complement(629981..631174) Synechococcus sp. JA-3-3Ab 3897340 YP_474100.1 CDS purD NC_007775.1 631635 632930 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(631635..632930) Synechococcus sp. JA-3-3Ab 3897341 YP_474101.1 CDS CYA_0623 NC_007775.1 633056 634186 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(633056..634186) Synechococcus sp. JA-3-3Ab 3897342 YP_474102.1 CDS CYA_0624 NC_007775.1 634313 635602 R identified by match to protein family HMM PF01966; HD domain-containing protein complement(634313..635602) Synechococcus sp. JA-3-3Ab 3897343 YP_474103.1 CDS CYA_0625 NC_007775.1 635727 636782 D identified by match to protein family HMM PF00657; GDSL-like lipase/acylhydrolase domain-containing protein 635727..636782 Synechococcus sp. JA-3-3Ab 3897344 YP_474104.1 CDS CYA_0626 NC_007775.1 636800 638650 R identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; metallo-beta-lactamase family protein complement(636800..638650) Synechococcus sp. JA-3-3Ab 3897301 YP_474105.1 CDS dapA NC_007775.1 638904 639824 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(638904..639824) Synechococcus sp. JA-3-3Ab 3897302 YP_474106.1 CDS CYA_0628 NC_007775.1 640132 640758 D identified by match to protein family HMM PF00881; nitroreductase family protein 640132..640758 Synechococcus sp. JA-3-3Ab 3897303 YP_474107.1 CDS trpD NC_007775.1 641898 642929 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(641898..642929) Synechococcus sp. JA-3-3Ab 3897305 YP_474108.1 CDS CYA_0631 NC_007775.1 642959 643759 R hypothetical protein complement(642959..643759) Synechococcus sp. JA-3-3Ab 3897306 YP_474109.1 CDS purN NC_007775.1 643786 644448 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(643786..644448) Synechococcus sp. JA-3-3Ab 3897307 YP_474110.1 CDS CYA_0633 NC_007775.1 645187 645657 D identified by similarity to PIR:AB2412; hypothetical protein 645187..645657 Synechococcus sp. JA-3-3Ab 3897308 YP_474111.1 CDS aat NC_007775.1 645674 646252 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 645674..646252 Synechococcus sp. JA-3-3Ab 3897309 YP_474112.1 CDS CYA_0635 NC_007775.1 646344 646526 D identified by similarity to GB:BAC09136.1; hypothetical protein 646344..646526 Synechococcus sp. JA-3-3Ab 3897310 YP_474113.1 CDS sasA NC_007775.1 646673 647806 D interacts with the circadian clock regulator KaiC to maintain circadian rhythms; adaptive-response sensory kinase 646673..647806 Synechococcus sp. JA-3-3Ab 3897311 YP_474114.1 CDS CYA_0636 NC_007775.1 647772 648272 R identified by match to protein family HMM PF02469; fasciclin domain-containing protein complement(647772..648272) Synechococcus sp. JA-3-3Ab 3897312 YP_474115.1 CDS CYA_0638 NC_007775.1 648407 649717 R identified by match to protein family HMM TIGR01964; CO2 hydration protein complement(648407..649717) Synechococcus sp. JA-3-3Ab 3897313 YP_474116.1 CDS CYA_0639 NC_007775.1 649763 651292 R identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH-ubiquinone/plastoquinone oxidoreductase subunit 4 family protein complement(649763..651292) Synechococcus sp. JA-3-3Ab 3897314 YP_474117.1 CDS CYA_0640 NC_007775.1 651333 653168 R Catalyzes the transfer of electrons from NADH to ubiquinone; NAD(P)H-quinone oxidoreductase subunit F complement(651333..653168) Synechococcus sp. JA-3-3Ab 3897315 YP_474118.1 CDS CYA_0641 NC_007775.1 653300 653461 R hypothetical protein complement(653300..653461) Synechococcus sp. JA-3-3Ab 3897316 YP_474119.1 CDS psbM NC_007775.1 653521 653628 R identified by similarity to SP:P72701; match to protein family HMM PF05151; photosystem II reaction center protein M complement(653521..653628) Synechococcus sp. JA-3-3Ab 3897317 YP_474120.1 CDS CYA_0643 NC_007775.1 653709 654005 R identified by match to protein family HMM PF00111; iron-sulfur cluster-binding protein complement(653709..654005) Synechococcus sp. JA-3-3Ab 3897318 YP_474121.1 CDS psbB NC_007775.1 654368 655900 D identified by similarity to SP:P20093; match to protein family HMM PF00421; photosystem II P680 chlorophyll A apoprotein 654368..655900 Synechococcus sp. JA-3-3Ab 3897319 YP_474122.1 CDS psbT NC_007775.1 656014 656112 D identified by match to protein family HMM PF01405; photosystem II reaction center protein PsbT 656014..656112 Synechococcus sp. JA-3-3Ab 3897282 YP_474123.1 CDS CYA_0647 NC_007775.1 656510 656917 D identified by similarity to PRF:2209375A; match to protein family HMM PF00072; response regulator 656510..656917 Synechococcus sp. JA-3-3Ab 3897283 YP_474124.1 CDS purQ NC_007775.1 656914 657591 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I complement(656914..657591) Synechococcus sp. JA-3-3Ab 3897284 YP_474125.1 CDS purS NC_007775.1 657644 657901 R identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase, PurS protein complement(657644..657901) Synechococcus sp. JA-3-3Ab 3897285 YP_474126.1 CDS CYA_0649 NC_007775.1 657961 658734 D identified by similarity to GB:AAC36156.1; pilus biogenesis protein 657961..658734 Synechococcus sp. JA-3-3Ab 3897286 YP_474127.1 CDS comB NC_007775.1 658781 659509 D identified by match to protein family HMM PF04029; match to protein family HMM TIGR00298; 2-phosphosulfolactate phosphatase 658781..659509 Synechococcus sp. JA-3-3Ab 3897287 YP_474128.1 CDS CYA_0650 NC_007775.1 659506 659844 R hypothetical protein complement(659506..659844) Synechococcus sp. JA-3-3Ab 3897288 YP_474129.1 CDS argC NC_007775.1 659997 661103 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 659997..661103 Synechococcus sp. JA-3-3Ab 3897289 YP_474130.1 CDS CYA_0653 NC_007775.1 661037 662572 D hypothetical protein 661037..662572 Synechococcus sp. JA-3-3Ab 3897290 YP_474131.1 CDS CYA_0654 NC_007775.1 662803 663885 D identified by similarity to SP:Q94FY7; tocopherol cyclase 662803..663885 Synechococcus sp. JA-3-3Ab 3897291 YP_474132.1 CDS clpC NC_007775.1 664229 666703 D identified by similarity to SP:P37571; match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; Clp protease, ATP-binding subunit ClpC 664229..666703 Synechococcus sp. JA-3-3Ab 3897293 YP_474133.1 CDS CYA_0657 NC_007775.1 666852 667484 D ClpR variant present in an operon with ClpP3 in Synechococcus PCC7942; ClpR is missing the catalytic triad Ser-His-Asp characteristic of serine-type proteases; the exact function of ClpR and ClpP3 is unknown however they appear to be necessary for cell viability; hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease-like protein 666852..667484 Synechococcus sp. JA-3-3Ab 3897294 YP_474134.1 CDS CYA_0658 NC_007775.1 667502 668083 D identified by similarity to PIR:AD2411; match to protein family HMM PF05685; hypothetical protein 667502..668083 Synechococcus sp. JA-3-3Ab 3897295 YP_474135.1 CDS clpP NC_007775.1 668111 668722 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 668111..668722 Synechococcus sp. JA-3-3Ab 3897296 YP_474136.1 CDS CYA_0660 NC_007775.1 668842 669264 D hypothetical protein 668842..669264 Synechococcus sp. JA-3-3Ab 3897297 YP_474137.1 CDS CYA_0661 NC_007775.1 669298 669954 R identified by match to protein family HMM PF06206; hypothetical protein complement(669298..669954) Synechococcus sp. JA-3-3Ab 3897298 YP_474138.1 CDS CYA_0662 NC_007775.1 670060 671454 D identified by similarity to SP:P16468; match to protein family HMM PF00390; match to protein family HMM PF01842; match to protein family HMM PF03949; malate dehydrogenase 670060..671454 Synechococcus sp. JA-3-3Ab 3897299 YP_474139.1 CDS CYA_0664 NC_007775.1 671834 672505 D identified by match to protein family HMM PF07758; hypothetical protein 671834..672505 Synechococcus sp. JA-3-3Ab 3897300 YP_474140.1 CDS CYA_0663 NC_007775.1 672502 674634 R identified by match to protein family HMM PF00656; match to protein family HMM TIGR01409; ICE-like protease complement(672502..674634) Synechococcus sp. JA-3-3Ab 3897244 YP_474141.1 CDS CYA_0665 NC_007775.1 675283 676173 R identified by match to protein family HMM PF02517; CAAX amino terminal protease family protein complement(675283..676173) Synechococcus sp. JA-3-3Ab 3897245 YP_474142.1 CDS CYA_0666 NC_007775.1 676304 677014 R identified by similarity to GB:BAC90862.1; hypothetical protein complement(676304..677014) Synechococcus sp. JA-3-3Ab 3897246 YP_474143.1 CDS CYA_0667 NC_007775.1 677064 678011 R identified by match to protein family HMM PF00483; nucleotidyl transferase family protein complement(677064..678011) Synechococcus sp. JA-3-3Ab 3897247 YP_474144.1 CDS zds NC_007775.1 678143 679594 R identified by similarity to SP:Q9FV46; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02732; carotene 7,8-desaturase complement(678143..679594) Synechococcus sp. JA-3-3Ab 3897248 YP_474145.1 CDS CYA_0669 NC_007775.1 679605 679709 R hypothetical protein complement(679605..679709) Synechococcus sp. JA-3-3Ab 3897249 YP_474146.1 CDS CYA_0671 NC_007775.1 679854 680588 R identified by match to protein family HMM PF02557; D-alanyl-D-alanine carboxypeptidase complement(679854..680588) Synechococcus sp. JA-3-3Ab 3897251 YP_474147.1 CDS CYA_0672 NC_007775.1 680628 681065 R identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein complement(680628..681065) Synechococcus sp. JA-3-3Ab 3897252 YP_474148.1 CDS CYA_0673 NC_007775.1 681136 681759 R identified by match to protein family HMM PF01966; HD domain-containing protein complement(681136..681759) Synechococcus sp. JA-3-3Ab 3897253 YP_474150.1 CDS mgtE-1 NC_007775.1 683434 684870 D identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 683434..684870 Synechococcus sp. JA-3-3Ab 3897255 YP_474151.1 CDS CYA_0676 NC_007775.1 684900 685172 D identified by similarity to PIR:AG2305; hypothetical protein 684900..685172 Synechococcus sp. JA-3-3Ab 3897256 YP_474152.1 CDS CYA_0677 NC_007775.1 685207 685908 D identified by match to protein family HMM PF02308; mgtC family protein 685207..685908 Synechococcus sp. JA-3-3Ab 3897257 YP_474153.1 CDS CYA_0678 NC_007775.1 686139 686762 R identified by match to protein family HMM PF01169; hypothetical protein complement(686139..686762) Synechococcus sp. JA-3-3Ab 3897258 YP_474154.1 CDS CYA_0679 NC_007775.1 687174 687296 D identified by similarity to GB:BAC91764.1; hypothetical protein 687174..687296 Synechococcus sp. JA-3-3Ab 3897259 YP_474155.1 CDS CYA_0680 NC_007775.1 687319 687720 D identified by similarity to SP:Q55761; match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 687319..687720 Synechococcus sp. JA-3-3Ab 3897260 YP_474156.1 CDS CYA_0682 NC_007775.1 688002 688256 D hypothetical protein 688002..688256 Synechococcus sp. JA-3-3Ab 3897261 YP_474157.1 CDS CYA_0681 NC_007775.1 688253 688795 R identified by similarity to PIR:AI2373; match to protein family HMM PF05991; hypothetical protein complement(688253..688795) Synechococcus sp. JA-3-3Ab 3897224 YP_474158.1 CDS CYA_0683 NC_007775.1 688930 689640 R identified by similarity to GB:BAC90862.1; hypothetical protein complement(688930..689640) Synechococcus sp. JA-3-3Ab 3897225 YP_474159.1 CDS CYA_0684 NC_007775.1 689690 690649 R identified by match to protein family HMM PF00483; nucleotidyl transferase family protein complement(689690..690649) Synechococcus sp. JA-3-3Ab 3897226 YP_474160.1 CDS CYA_0685 NC_007775.1 691106 691969 D identified by similarity to SP:P39174; match to protein family HMM PF00497; cystine ABC transporter cystine-binding protein 691106..691969 Synechococcus sp. JA-3-3Ab 3897227 YP_474161.1 CDS CYA_0686 NC_007775.1 692083 692787 D identified by similarity to SP:P42200; match to protein family HMM PF00528; match to protein family HMM TIGR01726; cystine ABC transporter permease 692083..692787 Synechococcus sp. JA-3-3Ab 3897228 YP_474162.1 CDS CYA_0687 NC_007775.1 693323 694534 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase 693323..694534 Synechococcus sp. JA-3-3Ab 3897229 YP_474163.1 CDS sdhA NC_007775.1 694687 696402 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 694687..696402 Synechococcus sp. JA-3-3Ab 3897230 YP_474164.1 CDS CYA_0689 NC_007775.1 696542 697939 D catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 696542..697939 Synechococcus sp. JA-3-3Ab 3897231 YP_474165.1 CDS CYA_0690 NC_007775.1 698056 699204 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase complement(698056..699204) Synechococcus sp. JA-3-3Ab 3897232 YP_474166.1 CDS CYA_0691 NC_007775.1 699490 699639 R hypothetical protein complement(699490..699639) Synechococcus sp. JA-3-3Ab 3897233 YP_474167.1 CDS CYA_0693 NC_007775.1 699774 701018 D identified by match to protein family HMM PF01926; GTP-binding domain-containing protein 699774..701018 Synechococcus sp. JA-3-3Ab 3897234 YP_474168.1 CDS lipA-1 NC_007775.1 701015 701869 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(701015..701869) Synechococcus sp. JA-3-3Ab 3897235 YP_474169.1 CDS CYA_0694 NC_007775.1 702091 702585 R hypothetical protein complement(702091..702585) Synechococcus sp. JA-3-3Ab 3897236 YP_474170.1 CDS CYA_0695 NC_007775.1 703051 703287 R identified by similarity to PIR:AF2125; hypothetical protein complement(703051..703287) Synechococcus sp. JA-3-3Ab 3897237 YP_474171.1 CDS CYA_0696 NC_007775.1 703721 704017 D identified by similarity to GB:BAC91322.1; hypothetical protein 703721..704017 Synechococcus sp. JA-3-3Ab 3897238 YP_474172.1 CDS CYA_0697 NC_007775.1 703998 704966 D identified by match to protein family HMM PF03819; match to protein family HMM TIGR00444; MazG family protein 703998..704966 Synechococcus sp. JA-3-3Ab 3897239 YP_474173.1 CDS CYA_0698 NC_007775.1 705228 705359 D hypothetical protein 705228..705359 Synechococcus sp. JA-3-3Ab 3897240 YP_474174.1 CDS CYA_0699 NC_007775.1 705467 706513 D identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase 705467..706513 Synechococcus sp. JA-3-3Ab 3897241 YP_474175.1 CDS CYA_0700 NC_007775.1 706635 707576 D identified by match to protein family HMM PF01841; protease 706635..707576 Synechococcus sp. JA-3-3Ab 3897242 YP_474176.1 CDS CYA_0701 NC_007775.1 707669 708175 D hypothetical protein 707669..708175 Synechococcus sp. JA-3-3Ab 3897243 YP_474177.1 CDS CYA_0702 NC_007775.1 708185 710911 R identified by match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF01743; match to protein family HMM PF02272; polyA polymerase family protein complement(708185..710911) Synechococcus sp. JA-3-3Ab 3897205 YP_474178.1 CDS frr NC_007775.1 711147 711695 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(711147..711695) Synechococcus sp. JA-3-3Ab 3897206 YP_474179.1 CDS CYA_0705 NC_007775.1 711934 712473 D hypothetical protein 711934..712473 Synechococcus sp. JA-3-3Ab 3897207 YP_474180.1 CDS CYA_0704 NC_007775.1 712445 713638 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase complement(712445..713638) Synechococcus sp. JA-3-3Ab 3897208 YP_474181.1 CDS CYA_0706 NC_007775.1 713715 714350 R identified by match to protein family HMM PF01169; hypothetical protein complement(713715..714350) Synechococcus sp. JA-3-3Ab 3897209 YP_474182.1 CDS CYA_0708 NC_007775.1 714927 715322 D identified by similarity to SP:Q8DI54; match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 714927..715322 Synechococcus sp. JA-3-3Ab 3897210 YP_474183.1 CDS CYA_0707 NC_007775.1 715289 715768 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(715289..715768) Synechococcus sp. JA-3-3Ab 3897211 YP_474184.1 CDS ahcY NC_007775.1 715879 717159 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 715879..717159 Synechococcus sp. JA-3-3Ab 3897212 YP_474185.1 CDS argG NC_007775.1 717300 718511 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(717300..718511) Synechococcus sp. JA-3-3Ab 3897213 YP_474186.1 CDS CYA_0711 NC_007775.1 718783 718953 R hypothetical protein complement(718783..718953) Synechococcus sp. JA-3-3Ab 3897214 YP_474187.1 CDS CYA_0712 NC_007775.1 719078 719575 D identified by similarity to PIR:AF2149; hypothetical protein 719078..719575 Synechococcus sp. JA-3-3Ab 3897215 YP_474188.1 CDS lipA-2 NC_007775.1 719654 720526 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 719654..720526 Synechococcus sp. JA-3-3Ab 3897216 YP_474189.1 CDS CYA_0713 NC_007775.1 720523 721737 R identified by match to protein family HMM PF01926; GTP-binding domain-containing protein complement(720523..721737) Synechococcus sp. JA-3-3Ab 3897217 YP_474190.1 CDS CYA_0715 NC_007775.1 721730 721882 D hypothetical protein 721730..721882 Synechococcus sp. JA-3-3Ab 3897218 YP_474191.1 CDS CYA_0716 NC_007775.1 721907 722056 D hypothetical protein 721907..722056 Synechococcus sp. JA-3-3Ab 3897219 YP_474192.1 CDS CYA_0717 NC_007775.1 722156 722287 D hypothetical protein 722156..722287 Synechococcus sp. JA-3-3Ab 3897220 YP_474193.1 CDS aroQ NC_007775.1 722265 722768 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 722265..722768 Synechococcus sp. JA-3-3Ab 3897221 YP_474194.1 CDS CYA_0719 NC_007775.1 723012 723548 R identified by match to protein family HMM PF00085; thioredoxin complement(723012..723548) Synechococcus sp. JA-3-3Ab 3897222 YP_474195.1 CDS CYA_0721 NC_007775.1 723925 727215 D identified by similarity to SP:P13458; SbcC family exonuclease 723925..727215 Synechococcus sp. JA-3-3Ab 3897223 YP_474196.1 CDS CYA_0720 NC_007775.1 727212 727643 R hypothetical protein complement(727212..727643) Synechococcus sp. JA-3-3Ab 3897193 YP_474197.1 CDS CYA_0722 NC_007775.1 727936 728202 R identified by similarity to GB:BAC09253.1; hypothetical protein complement(727936..728202) Synechococcus sp. JA-3-3Ab 3897194 YP_474198.1 CDS CYA_0723 NC_007775.1 728199 728519 R hypothetical protein complement(728199..728519) Synechococcus sp. JA-3-3Ab 3897195 YP_474199.1 CDS CYA_0724 NC_007775.1 728569 730068 R CobN/magnesium chelatase domain-containing protein complement(728569..730068) Synechococcus sp. JA-3-3Ab 3897196 YP_474200.1 CDS tal NC_007775.1 730086 731264 R maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase/EF-hand domain-containing protein complement(730086..731264) Synechococcus sp. JA-3-3Ab 3897197 YP_474201.1 CDS CYA_0726 NC_007775.1 731379 732659 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase complement(731379..732659) Synechococcus sp. JA-3-3Ab 3897198 YP_474202.1 CDS CYA_0727 NC_007775.1 732514 733107 R identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase complement(732514..733107) Synechococcus sp. JA-3-3Ab 3897199 YP_474203.1 CDS cas2-2 NC_007775.1 733729 734001 R identified by match to protein family HMM TIGR01873; CRISPR-associated Cas2 family protein complement(733729..734001) Synechococcus sp. JA-3-3Ab 3897200 YP_474204.1 CDS cas1-1 NC_007775.1 734001 734948 R identified by match to protein family HMM TIGR00287; CRISPR-associated Cas1 family protein complement(734001..734948) Synechococcus sp. JA-3-3Ab 3897201 YP_474205.1 CDS cse3 NC_007775.1 734975 735607 R identified by match to protein family HMM TIGR01907; CRISPR-associated Cse3 family protein complement(734975..735607) Synechococcus sp. JA-3-3Ab 3897202 YP_474206.1 CDS cas5e NC_007775.1 735589 736212 R identified by match to protein family HMM TIGR01868; match to protein family HMM TIGR02593; CRISPR-associated Cas5 family protein complement(735589..736212) Synechococcus sp. JA-3-3Ab 3897203 YP_474207.1 CDS cse4 NC_007775.1 736216 737358 R identified by match to protein family HMM TIGR01869; CRISPR-associated Cse4 family protein complement(736216..737358) Synechococcus sp. JA-3-3Ab 3897204 YP_474208.1 CDS cse2 NC_007775.1 737425 738024 R identified by match to protein family HMM TIGR02548; CRISPR-associated Cse2 family protein complement(737425..738024) Synechococcus sp. JA-3-3Ab 3897071 YP_474209.1 CDS cse1 NC_007775.1 738036 739610 R identified by match to protein family HMM TIGR02547; CRISPR-associated Cse1 family protein complement(738036..739610) Synechococcus sp. JA-3-3Ab 3897072 YP_474210.1 CDS cas3 NC_007775.1 739627 742308 R identified by match to protein family HMM PF00271; match to protein family HMM TIGR01587; CRISPR-associated helicase Cas3 complement(739627..742308) Synechococcus sp. JA-3-3Ab 3897073 YP_474211.1 CDS CYA_0736 NC_007775.1 742311 743219 R identified by similarity to GB:BAD01867.1; hypothetical protein complement(742311..743219) Synechococcus sp. JA-3-3Ab 3897074 YP_529500.1 CDS CYA_0737 NC_007775.1 743274 743990 D ISSoc8, transposase, interruption-N 743274..743990 Synechococcus sp. JA-3-3Ab 3897075 YP_529501.1 CDS CYA_0739 NC_007775.1 744741 745103 D identified by match to protein family HMM PF07282; ISSoc8, transposase, interruption-C 744741..745103 Synechococcus sp. JA-3-3Ab 3969016 YP_474212.1 CDS CYA_0738 NC_007775.1 745048 745221 R hypothetical protein complement(745048..745221) Synechococcus sp. JA-3-3Ab 3897076 YP_474213.1 CDS CYA_0740 NC_007775.1 745386 746318 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; RluA family pseudouridine synthase complement(745386..746318) Synechococcus sp. JA-3-3Ab 3897077 YP_474214.1 CDS ppsA NC_007775.1 746652 749111 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 746652..749111 Synechococcus sp. JA-3-3Ab 3897078 YP_474215.1 CDS CYA_0742 NC_007775.1 749181 750440 D identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; branched-chain alpha-keto acid dehydrogenase subunit E2 749181..750440 Synechococcus sp. JA-3-3Ab 3897079 YP_474216.1 CDS CYA_0743 NC_007775.1 750971 752635 D lipoprotein 750971..752635 Synechococcus sp. JA-3-3Ab 3897080 YP_474217.1 CDS CYA_0744 NC_007775.1 752909 753541 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(752909..753541) Synechococcus sp. JA-3-3Ab 3897081 YP_474218.1 CDS CYA_0745 NC_007775.1 753577 754698 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(753577..754698) Synechococcus sp. JA-3-3Ab 3897082 YP_474219.1 CDS CYA_0746 NC_007775.1 754760 754963 R hypothetical protein complement(754760..754963) Synechococcus sp. JA-3-3Ab 3897083 YP_474220.1 CDS CYA_0747 NC_007775.1 754994 756178 R shuttles electrons from NAD(P)H, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradien; NAD(P)H-quinone oxidoreductase subunit H complement(754994..756178) Synechococcus sp. JA-3-3Ab 3897084 YP_474221.1 CDS CYA_0748 NC_007775.1 756346 756663 D hypothetical protein 756346..756663 Synechococcus sp. JA-3-3Ab 3897085 YP_474222.1 CDS CYA_0749 NC_007775.1 756755 757312 R identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; carboxymuconolactone decarboxylase family protein complement(756755..757312) Synechococcus sp. JA-3-3Ab 3897086 YP_474223.1 CDS CYA_0750 NC_007775.1 757386 757637 R hypothetical protein complement(757386..757637) Synechococcus sp. JA-3-3Ab 3897087 YP_474224.1 CDS ureD NC_007775.1 758348 759151 D identified by similarity to SP:Q09063; match to protein family HMM PF01774; urease accessory protein UreD 758348..759151 Synechococcus sp. JA-3-3Ab 3897089 YP_474225.1 CDS CYA_0754 NC_007775.1 759189 760703 D hypothetical protein 759189..760703 Synechococcus sp. JA-3-3Ab 3897090 YP_474226.1 CDS CYA_0756 NC_007775.1 760890 762491 R identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase complement(760890..762491) Synechococcus sp. JA-3-3Ab 3898159 YP_474227.1 CDS CYA_0757 NC_007775.1 762688 763470 R hypothetical protein complement(762688..763470) Synechococcus sp. JA-3-3Ab 3898160 YP_474228.1 CDS CYA_0758 NC_007775.1 763464 764027 R hypothetical protein complement(763464..764027) Synechococcus sp. JA-3-3Ab 3898161 YP_474229.1 CDS ftsY NC_007775.1 764247 765707 R identified by similarity to SP:P51835; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY complement(764247..765707) Synechococcus sp. JA-3-3Ab 3898162 YP_474230.1 CDS purU NC_007775.1 765802 766650 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(765802..766650) Synechococcus sp. JA-3-3Ab 3898163 YP_474231.1 CDS tatA-1 NC_007775.1 766952 767290 R identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; twin-arginine translocation protein TatA complement(766952..767290) Synechococcus sp. JA-3-3Ab 3898164 YP_474232.1 CDS secA NC_007775.1 767499 770363 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 767499..770363 Synechococcus sp. JA-3-3Ab 3898165 YP_474233.1 CDS CYA_0763 NC_007775.1 770446 771204 R identified by match to protein family HMM PF04012; pspA/IM30 family protein complement(770446..771204) Synechococcus sp. JA-3-3Ab 3898166 YP_474234.1 CDS CYA_0764 NC_007775.1 771239 771949 R identified by match to protein family HMM PF01522; polysaccharide deacetylase complement(771239..771949) Synechococcus sp. JA-3-3Ab 3898167 YP_474235.1 CDS CYA_0765 NC_007775.1 771959 774466 R identified by match to protein family HMM PF01136; U32 family peptidase complement(771959..774466) Synechococcus sp. JA-3-3Ab 3898168 YP_474236.1 CDS CYA_0766 NC_007775.1 774623 774748 R hypothetical protein complement(774623..774748) Synechococcus sp. JA-3-3Ab 3898169 YP_474237.1 CDS CYA_0767 NC_007775.1 774780 775973 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase complement(774780..775973) Synechococcus sp. JA-3-3Ab 3898170 YP_474238.1 CDS sixA NC_007775.1 776204 776698 R identified by match to protein family HMM PF00300; match to protein family HMM TIGR00249; phosphohistidine phosphatase SixA complement(776204..776698) Synechococcus sp. JA-3-3Ab 3898171 YP_474239.1 CDS trx-1 NC_007775.1 776958 777299 D identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 776958..777299 Synechococcus sp. JA-3-3Ab 3898172 YP_474240.1 CDS CYA_0770 NC_007775.1 777430 778500 D identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; hypothetical protein 777430..778500 Synechococcus sp. JA-3-3Ab 3898173 YP_474241.1 CDS trpF NC_007775.1 778523 779203 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 778523..779203 Synechococcus sp. JA-3-3Ab 3898174 YP_474242.1 CDS CYA_0772 NC_007775.1 779226 780056 R hypothetical protein complement(779226..780056) Synechococcus sp. JA-3-3Ab 3898175 YP_474243.1 CDS CYA_0773 NC_007775.1 780166 780984 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridine synthase family protein complement(780166..780984) Synechococcus sp. JA-3-3Ab 3897596 YP_474244.1 CDS CYA_0774 NC_007775.1 781029 781538 R identified by similarity to GB:BAC92337.1; hypothetical protein complement(781029..781538) Synechococcus sp. JA-3-3Ab 3897597 YP_474245.1 CDS CYA_0775 NC_007775.1 781527 781706 D hypothetical protein 781527..781706 Synechococcus sp. JA-3-3Ab 3897598 YP_474246.1 CDS rbfA NC_007775.1 781898 782347 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(781898..782347) Synechococcus sp. JA-3-3Ab 3897599 YP_474247.1 CDS CYA_0777 NC_007775.1 782541 783770 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc5, transposase complement(782541..783770) Synechococcus sp. JA-3-3Ab 3897600 YP_474248.1 CDS CYA_0778 NC_007775.1 783953 784174 D identified by similarity to GB:BAC91135.1; hypothetical protein 783953..784174 Synechococcus sp. JA-3-3Ab 3897601 YP_474249.1 CDS CYA_0779 NC_007775.1 784113 784265 D hypothetical protein 784113..784265 Synechococcus sp. JA-3-3Ab 3897602 YP_474250.1 CDS phrB-2 NC_007775.1 784262 785701 D identified by similarity to SP:P05327; match to protein family HMM PF00875; match to protein family HMM PF03441; deoxyribodipyrimidine photolyase 784262..785701 Synechococcus sp. JA-3-3Ab 3897603 YP_474251.1 CDS CYA_0781 NC_007775.1 785884 787233 R identified by match to protein family HMM PF00245; alkaline phosphatase complement(785884..787233) Synechococcus sp. JA-3-3Ab 3897604 YP_474252.1 CDS CYA_0782 NC_007775.1 787481 789847 R identified by match to protein family HMM PF01841; membrane-bound protease complement(787481..789847) Synechococcus sp. JA-3-3Ab 3897605 YP_474253.1 CDS CYA_0783 NC_007775.1 789979 790077 R hypothetical protein complement(789979..790077) Synechococcus sp. JA-3-3Ab 3897606 YP_474254.1 CDS uvrA NC_007775.1 790054 792954 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 790054..792954 Synechococcus sp. JA-3-3Ab 3897607 YP_474255.1 CDS CYA_0785 NC_007775.1 793050 794243 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(793050..794243) Synechococcus sp. JA-3-3Ab 3897608 YP_474256.1 CDS dnaK-2 NC_007775.1 795580 797388 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 795580..797388 Synechococcus sp. JA-3-3Ab 3897610 YP_474257.1 CDS dnaJ NC_007775.1 797505 798689 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 797505..798689 Synechococcus sp. JA-3-3Ab 3897611 YP_474258.1 CDS CYA_0789 NC_007775.1 798686 798949 D identified by similarity to GB:BAC08540.1; hypothetical protein 798686..798949 Synechococcus sp. JA-3-3Ab 3897612 YP_474259.1 CDS rsgA NC_007775.1 798946 800037 D identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157; ribosome small subunit-dependent GTPase A 798946..800037 Synechococcus sp. JA-3-3Ab 3897613 YP_474260.1 CDS CYA_0791 NC_007775.1 800172 801692 D hypothetical protein 800172..801692 Synechococcus sp. JA-3-3Ab 3897614 YP_474261.1 CDS CYA_0792 NC_007775.1 801679 801798 D hypothetical protein 801679..801798 Synechococcus sp. JA-3-3Ab 3897615 YP_474262.1 CDS CYA_0793 NC_007775.1 802085 803077 D identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 802085..803077 Synechococcus sp. JA-3-3Ab 3898176 YP_474263.1 CDS CYA_0794 NC_007775.1 803159 804700 D identified by match to protein family HMM PF00512; sensor histidine kinase 803159..804700 Synechococcus sp. JA-3-3Ab 3898177 YP_474264.1 CDS CYA_0795 NC_007775.1 804796 805575 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 804796..805575 Synechococcus sp. JA-3-3Ab 3898178 YP_474265.1 CDS CYA_0796 NC_007775.1 805640 806377 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; DNA-binding response regulator 805640..806377 Synechococcus sp. JA-3-3Ab 3898179 YP_474266.1 CDS CYA_0797 NC_007775.1 806399 808078 R hypothetical protein complement(806399..808078) Synechococcus sp. JA-3-3Ab 3898180 YP_474267.1 CDS rnhA NC_007775.1 808142 808642 R identified by match to protein family HMM PF00075; ribonuclease H complement(808142..808642) Synechococcus sp. JA-3-3Ab 3898181 YP_474268.1 CDS CYA_0799 NC_007775.1 809059 810159 R identified by match to protein family HMM PF07085; DRTGG domain-containing protein complement(809059..810159) Synechococcus sp. JA-3-3Ab 3898182 YP_474269.1 CDS CYA_0800 NC_007775.1 810358 811815 R identified by similarity to GB:BAA32063.1; match to protein family HMM PF02386; Trk family K(+) transporter complement(810358..811815) Synechococcus sp. JA-3-3Ab 3898183 YP_474270.1 CDS CYA_0801 NC_007775.1 811827 812486 R identified by match to protein family HMM PF01210; match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF03446; Trk family K(+) transporter complement(811827..812486) Synechococcus sp. JA-3-3Ab 3898184 YP_474271.1 CDS clpX NC_007775.1 812563 813909 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(812563..813909) Synechococcus sp. JA-3-3Ab 3898185 YP_474272.1 CDS ligA NC_007775.1 814452 816473 R identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; NAD-dependent DNA ligase complement(814452..816473) Synechococcus sp. JA-3-3Ab 3898186 YP_474273.1 CDS rnc NC_007775.1 816711 817436 R identified by match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191; ribonuclease III complement(816711..817436) Synechococcus sp. JA-3-3Ab 3898187 YP_474274.1 CDS CYA_0805 NC_007775.1 817528 817860 D identified by similarity to PIR:AD1913; hypothetical protein 817528..817860 Synechococcus sp. JA-3-3Ab 3898188 YP_474275.1 CDS CYA_0806 NC_007775.1 817918 818223 R hypothetical protein complement(817918..818223) Synechococcus sp. JA-3-3Ab 3898189 YP_474276.1 CDS CYA_0807 NC_007775.1 818226 819443 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase complement(818226..819443) Synechococcus sp. JA-3-3Ab 3898190 YP_474277.1 CDS CYA_0808 NC_007775.1 819298 819891 R identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase complement(819298..819891) Synechococcus sp. JA-3-3Ab 3898191 YP_474278.1 CDS mutY NC_007775.1 820043 821119 R identified by match to protein family HMM PF00293; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR00586; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase complement(820043..821119) Synechococcus sp. JA-3-3Ab 3898192 YP_474279.1 CDS CYA_0810 NC_007775.1 821705 822037 R hypothetical protein complement(821705..822037) Synechococcus sp. JA-3-3Ab 3898193 YP_474280.1 CDS CYA_0811 NC_007775.1 822469 823629 D identified by match to protein family HMM PF00144; carboxylesterase 822469..823629 Synechococcus sp. JA-3-3Ab 3898194 YP_474281.1 CDS CYA_0812 NC_007775.1 823732 824013 D identified by match to protein family HMM PF01479; S4 domain-containing protein 823732..824013 Synechococcus sp. JA-3-3Ab 3898139 YP_474282.1 CDS CYA_0813 NC_007775.1 824515 825198 D identified by similarity to PIR:AH1843; membrane protein 824515..825198 Synechococcus sp. JA-3-3Ab 3898140 YP_474283.1 CDS CYA_0814 NC_007775.1 825281 825838 D hypothetical protein 825281..825838 Synechococcus sp. JA-3-3Ab 3898141 YP_474284.1 CDS aspC NC_007775.1 825882 827066 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 825882..827066 Synechococcus sp. JA-3-3Ab 3898142 YP_474285.1 CDS CYA_0816 NC_007775.1 827229 827486 D hypothetical protein 827229..827486 Synechococcus sp. JA-3-3Ab 3898143 YP_474286.1 CDS cefD NC_007775.1 829654 830793 D identified by similarity to SP:Q03046; match to protein family HMM PF00266; isopenicillin N-epimerase 829654..830793 Synechococcus sp. JA-3-3Ab 3898145 YP_474287.1 CDS CYA_0819 NC_007775.1 830790 830894 D hypothetical protein 830790..830894 Synechococcus sp. JA-3-3Ab 3898146 YP_474288.1 CDS CYA_0820 NC_007775.1 830936 833575 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 830936..833575 Synechococcus sp. JA-3-3Ab 3898147 YP_474289.1 CDS CYA_0821 NC_007775.1 834601 836736 D identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease 834601..836736 Synechococcus sp. JA-3-3Ab 3898148 YP_474290.1 CDS rnhB NC_007775.1 836795 837460 D identified by similarity to SP:O31744; match to protein family HMM PF01351; ribonuclease HII 836795..837460 Synechococcus sp. JA-3-3Ab 3898149 YP_474291.1 CDS CYA_0824 NC_007775.1 837615 838040 R hypothetical protein complement(837615..838040) Synechococcus sp. JA-3-3Ab 3898151 YP_474292.1 CDS gvpJ NC_007775.1 838116 838448 R identified by similarity to SP:O68669; match to protein family HMM PF00741; gas vesicle protein J complement(838116..838448) Synechococcus sp. JA-3-3Ab 3898152 YP_474293.1 CDS gvpN NC_007775.1 838488 839372 R identified by match to protein family HMM PF07726; match to protein family HMM PF07728; match to protein family HMM TIGR02640; gas vesicle protein GvpN complement(838488..839372) Synechococcus sp. JA-3-3Ab 3898153 YP_474294.1 CDS gvpC NC_007775.1 839461 840459 R identified by match to protein family HMM TIGR02641; gas vesicle structural protein GvpC complement(839461..840459) Synechococcus sp. JA-3-3Ab 3898154 YP_474295.1 CDS CYA_0828 NC_007775.1 840868 841071 R hypothetical protein complement(840868..841071) Synechococcus sp. JA-3-3Ab 3898155 YP_474296.1 CDS gvpA NC_007775.1 841132 841350 R involved in formation of gas vesicle which are protein structures that contain gas involved in buoyancy; part of an operon of other gas vesicle synthesis proteins; gas vesicle synthesis protein GvpA complement(841132..841350) Synechococcus sp. JA-3-3Ab 3898156 YP_474297.1 CDS CYA_0830 NC_007775.1 841733 841951 D hypothetical protein 841733..841951 Synechococcus sp. JA-3-3Ab 3898157 YP_474298.1 CDS CYA_0831 NC_007775.1 842103 842786 D identified by match to protein family HMM PF02830; V4R domain-containing protein 842103..842786 Synechococcus sp. JA-3-3Ab 3898120 YP_474299.1 CDS CYA_0832 NC_007775.1 842783 843034 D hypothetical protein 842783..843034 Synechococcus sp. JA-3-3Ab 3898121 YP_474300.1 CDS CYA_0833 NC_007775.1 843080 843559 D identified by similarity to GB:BAC09852.1; hypothetical protein 843080..843559 Synechococcus sp. JA-3-3Ab 3898122 YP_474301.1 CDS CYA_0834 NC_007775.1 843616 844305 D V4R domain-containing protein 843616..844305 Synechococcus sp. JA-3-3Ab 3898123 YP_474302.1 CDS aroH NC_007775.1 844397 844771 D identified by similarity to SP:P19080; match to protein family HMM PF07736; match to protein family HMM TIGR01796; chorismate mutase 844397..844771 Synechococcus sp. JA-3-3Ab 3898124 YP_474303.1 CDS CYA_0835 NC_007775.1 844768 845169 R hypothetical protein complement(844768..845169) Synechococcus sp. JA-3-3Ab 3898125 YP_474304.1 CDS CYA_0837 NC_007775.1 845336 846118 D identified by similarity to SP:Q55823; hypothetical protein 845336..846118 Synechococcus sp. JA-3-3Ab 3898126 YP_474305.1 CDS ppc NC_007775.1 846251 849187 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(846251..849187) Synechococcus sp. JA-3-3Ab 3898127 YP_474306.1 CDS CYA_0839 NC_007775.1 849310 849567 R identified by similarity to GB:BAD79475.1; hypothetical protein complement(849310..849567) Synechococcus sp. JA-3-3Ab 3898128 YP_474307.1 CDS CYA_0841 NC_007775.1 850888 851364 D hypothetical protein 850888..851364 Synechococcus sp. JA-3-3Ab 3898129 YP_474308.1 CDS CYA_0840 NC_007775.1 851354 851761 R identified by match to protein family HMM PF02518; sensor histidine kinase complement(851354..851761) Synechococcus sp. JA-3-3Ab 3898130 YP_474309.1 CDS CYA_0842 NC_007775.1 851871 852020 D hypothetical protein 851871..852020 Synechococcus sp. JA-3-3Ab 3898131 YP_474310.1 CDS CYA_0843 NC_007775.1 852141 852719 D identified by similarity to PIR:S76054; hypothetical protein 852141..852719 Synechococcus sp. JA-3-3Ab 3898132 YP_474311.1 CDS map-1 NC_007775.1 852908 853696 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 852908..853696 Synechococcus sp. JA-3-3Ab 3898133 YP_474312.1 CDS CYA_0845 NC_007775.1 853703 855547 D identified by match to protein family HMM PF00571; match to protein family HMM PF00654; chloride channel (ClC) family protein 853703..855547 Synechococcus sp. JA-3-3Ab 3898134 YP_474313.1 CDS CYA_0846 NC_007775.1 855551 856219 R identified by match to protein family HMM PF00730; base excision DNA repair protein complement(855551..856219) Synechococcus sp. JA-3-3Ab 3898135 YP_474314.1 CDS murG NC_007775.1 856359 857447 R identified by similarity to SP:P17443; match to protein family HMM PF03033; match to protein family HMM PF04101; match to protein family HMM TIGR01133; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase complement(856359..857447) Synechococcus sp. JA-3-3Ab 3898136 YP_474315.1 CDS CYA_0848 NC_007775.1 857455 858429 R similar to Arabidopsis thaliana photosystem II assembly protein; Ycf48-like protein complement(857455..858429) Synechococcus sp. JA-3-3Ab 3898137 YP_474316.1 CDS CYA_0849 NC_007775.1 858459 858764 R identified by match to protein family HMM PF00301; rubredoxin complement(858459..858764) Synechococcus sp. JA-3-3Ab 3898138 YP_474317.1 CDS CYA_0850 NC_007775.1 859234 859644 D identified by match to protein family HMM PF00498; FHA domain-containing protein 859234..859644 Synechococcus sp. JA-3-3Ab 3898100 YP_474318.1 CDS CYA_0851 NC_007775.1 860073 860210 D hypothetical protein 860073..860210 Synechococcus sp. JA-3-3Ab 3898101 YP_474319.1 CDS accC NC_007775.1 860606 861961 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 860606..861961 Synechococcus sp. JA-3-3Ab 3898102 YP_474320.1 CDS CYA_0853 NC_007775.1 862122 863051 D identified by match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase family site specific recombinase 862122..863051 Synechococcus sp. JA-3-3Ab 3898103 YP_474321.1 CDS CYA_0854 NC_007775.1 863105 863200 R hypothetical protein complement(863105..863200) Synechococcus sp. JA-3-3Ab 3898104 YP_474322.1 CDS CYA_0855 NC_007775.1 863215 864228 R hypothetical protein complement(863215..864228) Synechococcus sp. JA-3-3Ab 3898105 YP_474323.1 CDS CYA_0856 NC_007775.1 864219 864821 R identified by match to protein family HMM PF00226; DnaJ domain-containing protein complement(864219..864821) Synechococcus sp. JA-3-3Ab 3898106 YP_474324.1 CDS CYA_0857 NC_007775.1 865147 865431 R hypothetical protein complement(865147..865431) Synechococcus sp. JA-3-3Ab 3898107 YP_474325.1 CDS CYA_0858 NC_007775.1 865478 866230 R identified by similarity to PIR:S75174; match to protein family HMM PF04481; hypothetical protein complement(865478..866230) Synechococcus sp. JA-3-3Ab 3898108 YP_474326.1 CDS speB NC_007775.1 866403 867308 D identified by similarity to SP:P70999; match to protein family HMM PF00491; match to protein family HMM TIGR01230; agmatinase 866403..867308 Synechococcus sp. JA-3-3Ab 3898109 YP_474327.1 CDS CYA_0860 NC_007775.1 867735 868409 D identified by similarity to GB:AAO80804.1; match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 867735..868409 Synechococcus sp. JA-3-3Ab 3898110 YP_474328.1 CDS CYA_0861 NC_007775.1 868983 869552 D identified by similarity to PIR:AF1867; match to protein family HMM PF04472; hypothetical protein 868983..869552 Synechococcus sp. JA-3-3Ab 3898111 YP_474329.1 CDS proC NC_007775.1 869558 870361 D catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 869558..870361 Synechococcus sp. JA-3-3Ab 3898112 YP_474330.1 CDS CYA_0862 NC_007775.1 870347 871561 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase complement(870347..871561) Synechococcus sp. JA-3-3Ab 3898113 YP_474331.1 CDS CYA_0864 NC_007775.1 871611 872861 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator transporter complement(871611..872861) Synechococcus sp. JA-3-3Ab 3898114 YP_474332.1 CDS CYA_0865 NC_007775.1 872893 872991 R hypothetical protein complement(872893..872991) Synechococcus sp. JA-3-3Ab 3898115 YP_474333.1 CDS CYA_0866 NC_007775.1 872992 873099 R hypothetical protein complement(872992..873099) Synechococcus sp. JA-3-3Ab 3898116 YP_474334.1 CDS CYA_0867 NC_007775.1 873307 873600 R identified by similarity to GB:BAC10003.1; hypothetical protein complement(873307..873600) Synechococcus sp. JA-3-3Ab 3898117 YP_474335.1 CDS CYA_0868 NC_007775.1 873814 874056 D identified by similarity to PIR:AB2198; hypothetical protein 873814..874056 Synechococcus sp. JA-3-3Ab 3898118 YP_474336.1 CDS hemF NC_007775.1 874178 875191 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 874178..875191 Synechococcus sp. JA-3-3Ab 3898119 YP_474337.1 CDS CYA_0870 NC_007775.1 875223 875918 D identified by similarity to SP:Q53547; match to protein family HMM PF02230; phospholipase/carboxylesterase family protein 875223..875918 Synechococcus sp. JA-3-3Ab 3897826 YP_474338.1 CDS CYA_0872 NC_007775.1 875992 877470 D identified by similarity to GB:BAD78368.1; hypothetical protein 875992..877470 Synechococcus sp. JA-3-3Ab 3897827 YP_474339.1 CDS CYA_0871 NC_007775.1 877467 878363 R identified by match to protein family HMM TIGR02619; CRISPR-associated protein complement(877467..878363) Synechococcus sp. JA-3-3Ab 3897828 YP_474340.1 CDS CYA_0873 NC_007775.1 878417 879133 R hypothetical protein complement(878417..879133) Synechococcus sp. JA-3-3Ab 3897829 YP_474341.1 CDS CYA_0874 NC_007775.1 879144 880196 R identified by similarity to PIR:AC1990; match to protein family HMM PF03787; match to protein family HMM TIGR02581; CRISPR-associated RAMP family protein complement(879144..880196) Synechococcus sp. JA-3-3Ab 3897830 YP_474342.1 CDS CYA_0875 NC_007775.1 880193 880651 R identified by similarity to PIR:AD1990; hypothetical protein complement(880193..880651) Synechococcus sp. JA-3-3Ab 3897831 YP_474343.1 CDS CYA_0876 NC_007775.1 880648 881622 R identified by match to protein family HMM PF03787; CRISPR-associated RAMP family protein complement(880648..881622) Synechococcus sp. JA-3-3Ab 3897832 YP_474344.1 CDS CYA_0877 NC_007775.1 881677 882519 R identified by match to protein family HMM PF03787; match to protein family HMM TIGR02581; CRISPR-associated Csm3 family protein complement(881677..882519) Synechococcus sp. JA-3-3Ab 3897833 YP_474345.1 CDS CYA_0878 NC_007775.1 882527 882664 R hypothetical protein complement(882527..882664) Synechococcus sp. JA-3-3Ab 3897834 YP_474346.1 CDS CYA_0879 NC_007775.1 882668 883114 R hypothetical protein complement(882668..883114) Synechococcus sp. JA-3-3Ab 3897835 YP_474347.1 CDS csx10 NC_007775.1 883111 884334 R identified by match to protein family HMM PF03787; match to protein family HMM TIGR02674; CRISPR-associated RAMP Csx10 family protein complement(883111..884334) Synechococcus sp. JA-3-3Ab 3897836 YP_474348.1 CDS CYA_0881 NC_007775.1 884334 885047 R identified by match to protein family HMM PF03787; CRISPR-associated RAMP family protein complement(884334..885047) Synechococcus sp. JA-3-3Ab 3897837 YP_474349.1 CDS crm2-1 NC_007775.1 885047 887242 R identified by match to protein family HMM TIGR01872; match to protein family HMM TIGR02577; CRISPR-associated RAMP Crm2 family protein complement(885047..887242) Synechococcus sp. JA-3-3Ab 3897838 YP_474350.1 CDS cas6 NC_007775.1 887772 888923 D identified by match to protein family HMM TIGR01877; CRISPR-associated Cas family protein 887772..888923 Synechococcus sp. JA-3-3Ab 3897839 YP_474352.1 CDS cas2-3 NC_007775.1 892609 892887 R identified by match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein complement(892609..892887) Synechococcus sp. JA-3-3Ab 3897880 YP_474353.1 CDS CYA_0887 NC_007775.1 893440 894633 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase 893440..894633 Synechococcus sp. JA-3-3Ab 3897882 YP_474354.1 CDS CYA_0889 NC_007775.1 894897 895712 R identified by similarity to GB:BAD01980.1; hypothetical protein complement(894897..895712) Synechococcus sp. JA-3-3Ab 3897883 YP_474355.1 CDS csx3 NC_007775.1 896418 897338 D identified by match to protein family HMM TIGR02579; CRISPR-associated Csx3 family protein 896418..897338 Synechococcus sp. JA-3-3Ab 3897884 YP_474356.1 CDS ntrD-2 NC_007775.1 897554 898417 R identified by similarity to SP:P38045; similarity to SP:P38046; match to protein family HMM PF00005; match to protein family HMM TIGR01184; nitrate ABC transporter ATP-binding protein NtrD complement(897554..898417) Synechococcus sp. JA-3-3Ab 3897885 YP_474357.1 CDS ntrC-2 NC_007775.1 898480 900489 R identified by similarity to SP:P38045; match to protein family HMM PF00005; match to protein family HMM TIGR01184; nitrate ABC transporter ATP-binding protein NtrC complement(898480..900489) Synechococcus sp. JA-3-3Ab 3897886 YP_474358.1 CDS ntrB-2 NC_007775.1 900649 901476 R identified by similarity to GB:AAB86903.1; match to protein family HMM PF00528; match to protein family HMM TIGR01183; nitrate ABC transporter permease complement(900649..901476) Synechococcus sp. JA-3-3Ab 3898234 YP_474359.1 CDS CYA_0894 NC_007775.1 902016 903320 R identified by similarity to SP:P39660; similarity to GB:AAQ23048.1; match to protein family HMM TIGR01409; nitrate/nitrite/cyanate ABC transporter periplasmic substrate-binding protein complement(902016..903320) Synechococcus sp. JA-3-3Ab 3898235 YP_474360.1 CDS CYA_0896 NC_007775.1 903531 904487 D tocopherol cyclase 903531..904487 Synechococcus sp. JA-3-3Ab 3898236 YP_474361.1 CDS chlB NC_007775.1 904453 905985 R light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit B complement(904453..905985) Synechococcus sp. JA-3-3Ab 3898237 YP_474362.1 CDS CYA_0897 NC_007775.1 906359 906496 D hypothetical protein 906359..906496 Synechococcus sp. JA-3-3Ab 3898238 YP_474363.1 CDS CYA_0898 NC_007775.1 906579 906881 D identified by match to protein family HMM PF06967; mo-dependent nitrogenase family protein 906579..906881 Synechococcus sp. JA-3-3Ab 3898239 YP_474364.1 CDS CYA_0899 NC_007775.1 907420 907773 R identified by similarity to PIR:S75476; match to protein family HMM PF01934; hypothetical protein complement(907420..907773) Synechococcus sp. JA-3-3Ab 3898240 YP_474365.1 CDS CYA_0900 NC_007775.1 907763 908056 R identified by match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein complement(907763..908056) Synechococcus sp. JA-3-3Ab 3898241 YP_474366.1 CDS CYA_0901 NC_007775.1 908362 913500 R identified by similarity to PIR:AE1864; match to protein family HMM PF04357; hypothetical protein complement(908362..913500) Synechococcus sp. JA-3-3Ab 3898242 YP_474367.1 CDS CYA_0902 NC_007775.1 913576 913902 D identified by match to protein family HMM PF01740; anti-anti-sigma factor family protein 913576..913902 Synechococcus sp. JA-3-3Ab 3898243 YP_474368.1 CDS cobI NC_007775.1 913923 914639 D catalyzes the formation of precorrin-3 from precorrin-2; precorrin-2 methyltransferase 913923..914639 Synechococcus sp. JA-3-3Ab 3898244 YP_474369.1 CDS CYA_0904 NC_007775.1 915448 915594 D hypothetical protein 915448..915594 Synechococcus sp. JA-3-3Ab 3898245 YP_474370.1 CDS CYA_0905 NC_007775.1 915781 916449 D identified by match to protein family HMM PF00583; acetyltransferase 915781..916449 Synechococcus sp. JA-3-3Ab 3898246 YP_474371.1 CDS CYA_0907 NC_007775.1 916527 917060 D identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 916527..917060 Synechococcus sp. JA-3-3Ab 3898247 YP_474372.1 CDS CYA_0906 NC_007775.1 917057 917242 R identified by similarity to PIR:AD2255; hypothetical protein complement(917057..917242) Synechococcus sp. JA-3-3Ab 3898248 YP_474373.1 CDS CYA_0909 NC_007775.1 917241 917993 D identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase family protein 917241..917993 Synechococcus sp. JA-3-3Ab 3898249 YP_474374.1 CDS pcm NC_007775.1 917990 918616 R identified by similarity to SP:P24206; match to protein family HMM PF01135; match to protein family HMM TIGR00080; protein-L-isoaspartate(D-aspartate) O-methyltransferase complement(917990..918616) Synechococcus sp. JA-3-3Ab 3898250 YP_474375.1 CDS CYA_0910 NC_007775.1 918955 920313 R identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; hypothetical protein complement(918955..920313) Synechococcus sp. JA-3-3Ab 3898251 YP_474376.1 CDS CYA_0911 NC_007775.1 920306 921313 R identified by match to protein family HMM PF03668; hypothetical protein complement(920306..921313) Synechococcus sp. JA-3-3Ab 3898252 YP_474377.1 CDS nth NC_007775.1 921363 922058 R identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III complement(921363..922058) Synechococcus sp. JA-3-3Ab 3898253 YP_474378.1 CDS CYA_0913 NC_007775.1 922065 923165 R identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054; membrane-associated zinc metalloprotease complement(922065..923165) Synechococcus sp. JA-3-3Ab 3898254 YP_474379.1 CDS CYA_0914 NC_007775.1 923278 923520 R identified by match to protein family HMM PF01106; NifU domain-containing protein complement(923278..923520) Synechococcus sp. JA-3-3Ab 3898255 YP_474380.1 CDS CYA_0915 NC_007775.1 923754 924848 D identified by match to protein family HMM PF01850; match to protein family HMM PF01938; PIN/TRAM domain-containing protein 923754..924848 Synechococcus sp. JA-3-3Ab 3898256 YP_474381.1 CDS CYA_0916 NC_007775.1 924902 926623 D identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; sensor histidine kinase 924902..926623 Synechococcus sp. JA-3-3Ab 3898257 YP_474382.1 CDS ksgA NC_007775.1 926631 927470 D identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755; dimethyladenosine transferase 926631..927470 Synechococcus sp. JA-3-3Ab 3898258 YP_474383.1 CDS fabG NC_007775.1 927519 928223 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 927519..928223 Synechococcus sp. JA-3-3Ab 3898259 YP_474384.1 CDS sppA-1 NC_007775.1 928298 929104 D identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 36K type 928298..929104 Synechococcus sp. JA-3-3Ab 3898260 YP_474385.1 CDS CYA_0920 NC_007775.1 929252 930337 R identified by similarity to PIR:AB2462; hypothetical protein complement(929252..930337) Synechococcus sp. JA-3-3Ab 3898261 YP_474386.1 CDS CYA_0921 NC_007775.1 931016 931129 R hypothetical protein complement(931016..931129) Synechococcus sp. JA-3-3Ab 3898262 YP_474387.1 CDS CYA_0922 NC_007775.1 931131 931571 R identified by similarity to GB:BAC07718.1; hypothetical protein complement(931131..931571) Synechococcus sp. JA-3-3Ab 3898263 YP_474388.1 CDS CYA_0923 NC_007775.1 932014 933912 D identified by match to protein family HMM PF00999; match to protein family HMM PF02254; monovalent cation:proton antiporter-2 (CPA2) family protein 932014..933912 Synechococcus sp. JA-3-3Ab 3898264 YP_474389.1 CDS CYA_0924 NC_007775.1 933940 935304 R identified by match to protein family HMM PF01839; match to protein family HMM PF07593; FG-GAP repeat- ASPIC/UnbV domain-containing protein complement(933940..935304) Synechococcus sp. JA-3-3Ab 3898265 YP_474390.1 CDS rpsT NC_007775.1 935393 935695 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 935393..935695 Synechococcus sp. JA-3-3Ab 3898266 YP_474391.1 CDS CYA_0926 NC_007775.1 936772 937035 D identified by match to protein family HMM PF02195; nuclease 936772..937035 Synechococcus sp. JA-3-3Ab 3898267 YP_474392.1 CDS CYA_0927 NC_007775.1 937057 937728 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family DNA-binding response regulator complement(937057..937728) Synechococcus sp. JA-3-3Ab 3898268 YP_474393.1 CDS CYA_0928 NC_007775.1 937912 938700 R hypothetical protein complement(937912..938700) Synechococcus sp. JA-3-3Ab 3898269 YP_474394.1 CDS cobA NC_007775.1 938697 939455 R catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase complement(938697..939455) Synechococcus sp. JA-3-3Ab 3898270 YP_474395.1 CDS CYA_0930 NC_007775.1 939523 940422 R identified by similarity to SP:O87690; match to protein family HMM PF01903; CbiX family protein complement(939523..940422) Synechococcus sp. JA-3-3Ab 3898271 YP_474396.1 CDS CYA_0931 NC_007775.1 940421 941374 D identified by match to protein family HMM PF06089; L-asparaginase, thermolabile 940421..941374 Synechococcus sp. JA-3-3Ab 3898272 YP_474397.1 CDS CYA_0932 NC_007775.1 941582 942214 D hypothetical protein 941582..942214 Synechococcus sp. JA-3-3Ab 3898366 YP_474398.1 CDS CYA_0933 NC_007775.1 943317 944390 D hypothetical protein 943317..944390 Synechococcus sp. JA-3-3Ab 3898367 YP_474399.1 CDS CYA_0934 NC_007775.1 944702 945376 R identified by similarity to PIR:AI2367; hypothetical protein complement(944702..945376) Synechococcus sp. JA-3-3Ab 3898368 YP_474400.1 CDS CYA_0935 NC_007775.1 945552 946043 R nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein complement(945552..946043) Synechococcus sp. JA-3-3Ab 3898369 YP_474401.1 CDS CYA_0936 NC_007775.1 946162 947004 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase 946162..947004 Synechococcus sp. JA-3-3Ab 3898370 YP_474402.1 CDS CYA_0938 NC_007775.1 947117 947479 D identified by match to protein family HMM PF00498; FHA domain-containing protein 947117..947479 Synechococcus sp. JA-3-3Ab 3898371 YP_474403.1 CDS CYA_0937 NC_007775.1 947476 948816 R identified by match to protein family HMM PF01943; polysaccharide biosynthesis domain-containing protein complement(947476..948816) Synechococcus sp. JA-3-3Ab 3898372 YP_474404.1 CDS CYA_0939 NC_007775.1 948786 950765 D identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 948786..950765 Synechococcus sp. JA-3-3Ab 3898373 YP_474405.1 CDS hup-2 NC_007775.1 951098 951415 D identified by similarity to SP:P05514; match to protein family HMM PF00216; DNA-binding protein HU 951098..951415 Synechococcus sp. JA-3-3Ab 3898374 YP_474406.1 CDS cobD-2 NC_007775.1 951486 952631 D cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 951486..952631 Synechococcus sp. JA-3-3Ab 3898375 YP_474407.1 CDS CYA_0942 NC_007775.1 952658 953323 D identified by similarity to PIR:AH2253; hypothetical protein 952658..953323 Synechococcus sp. JA-3-3Ab 3898376 YP_474408.1 CDS CYA_0943 NC_007775.1 953467 954468 D hypothetical protein 953467..954468 Synechococcus sp. JA-3-3Ab 3898377 YP_474409.1 CDS CYA_0944 NC_007775.1 954669 955745 R identified by match to protein family HMM TIGR01409; secreted protein complement(954669..955745) Synechococcus sp. JA-3-3Ab 3898378 YP_474410.1 CDS nadC NC_007775.1 955764 956606 D identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase 955764..956606 Synechococcus sp. JA-3-3Ab 3898379 YP_474411.1 CDS nadA NC_007775.1 956763 957695 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 956763..957695 Synechococcus sp. JA-3-3Ab 3898380 YP_474412.1 CDS nadB NC_007775.1 957733 959253 D identified by similarity to SP:P10902; match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR00551; L-aspartate oxidase 957733..959253 Synechococcus sp. JA-3-3Ab 3898381 YP_474413.1 CDS gnd NC_007775.1 959250 960659 R identified by match to protein family HMM PF00393; match to protein family HMM PF03446; match to protein family HMM TIGR00873; 6-phosphogluconate dehydrogenase complement(959250..960659) Synechococcus sp. JA-3-3Ab 3898382 YP_474414.1 CDS CYA_0949 NC_007775.1 960752 961249 R identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein complement(960752..961249) Synechococcus sp. JA-3-3Ab 3898383 YP_474415.1 CDS CYA_0950 NC_007775.1 961326 962519 D identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299; hypothetical protein 961326..962519 Synechococcus sp. JA-3-3Ab 3898384 YP_474416.1 CDS CYA_0951 NC_007775.1 962731 964725 D identified by match to protein family HMM PF00005; peroxisomal fatty acyl CoA ABC transporter transmembrane ATP-binding protein 962731..964725 Synechococcus sp. JA-3-3Ab 3898385 YP_474417.1 CDS sir NC_007775.1 964842 966620 D hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 964842..966620 Synechococcus sp. JA-3-3Ab 3898347 YP_474418.1 CDS CYA_0953 NC_007775.1 966736 967527 D identified by match to protein family HMM PF00515; match to protein family HMM PF07721; hypothetical protein 966736..967527 Synechococcus sp. JA-3-3Ab 3898348 YP_474419.1 CDS CYA_0954 NC_007775.1 967595 967939 R identified by match to protein family HMM PF01740; anti-anti-sigma factor family protein complement(967595..967939) Synechococcus sp. JA-3-3Ab 3898349 YP_474420.1 CDS CYA_0955 NC_007775.1 968098 969234 D identified by match to protein family HMM PF00535; glycosyl transferase 968098..969234 Synechococcus sp. JA-3-3Ab 3898350 YP_474421.1 CDS CYA_0956 NC_007775.1 969244 970194 R identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571; D12 class N6 adenine-specific DNA methyltransferase complement(969244..970194) Synechococcus sp. JA-3-3Ab 3898351 YP_474422.1 CDS CYA_0957 NC_007775.1 970268 970444 R hypothetical protein complement(970268..970444) Synechococcus sp. JA-3-3Ab 3898352 YP_474423.1 CDS CYA_0958 NC_007775.1 970713 970877 R hypothetical protein complement(970713..970877) Synechococcus sp. JA-3-3Ab 3898353 YP_474424.1 CDS CYA_0959 NC_007775.1 971755 972450 D identified by match to protein family HMM PF00117; glutamine amidotransferase 971755..972450 Synechococcus sp. JA-3-3Ab 3898354 YP_474425.1 CDS murD NC_007775.1 972527 973936 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 972527..973936 Synechococcus sp. JA-3-3Ab 3898355 YP_474426.1 CDS CYA_0961 NC_007775.1 973845 975005 D identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; cell division protein FtsW 973845..975005 Synechococcus sp. JA-3-3Ab 3898356 YP_474427.1 CDS CYA_0962 NC_007775.1 975020 975553 R hypothetical protein complement(975020..975553) Synechococcus sp. JA-3-3Ab 3898357 YP_474428.1 CDS CYA_0965 NC_007775.1 976929 977528 D hypothetical protein 976929..977528 Synechococcus sp. JA-3-3Ab 3898359 YP_474429.1 CDS CYA_0964 NC_007775.1 977468 978337 R identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase complement(977468..978337) Synechococcus sp. JA-3-3Ab 3898360 YP_474430.1 CDS CYA_0966 NC_007775.1 978380 979045 R identified by match to protein family HMM PF00325; Crp/FNR family transcriptional regulator complement(978380..979045) Synechococcus sp. JA-3-3Ab 3898361 YP_474431.1 CDS surE NC_007775.1 979418 980197 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 979418..980197 Synechococcus sp. JA-3-3Ab 3898362 YP_474432.1 CDS CYA_0968 NC_007775.1 980254 980715 R identified by similarity to PIR:AE1929; match to protein family HMM PF04543; hypothetical protein complement(980254..980715) Synechococcus sp. JA-3-3Ab 3898363 YP_474433.1 CDS hisH NC_007775.1 980722 981372 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(980722..981372) Synechococcus sp. JA-3-3Ab 3898364 YP_474434.1 CDS grpE NC_007775.1 982540 983253 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(982540..983253) Synechococcus sp. JA-3-3Ab 3898328 YP_474435.1 CDS CYA_0972 NC_007775.1 983430 985091 R identified by similarity to SP:P26265; match to protein family HMM PF00149; match to protein family HMM PF02872; 2`,3`-cyclic-nucleotide 2`-phosphodiesterase complement(983430..985091) Synechococcus sp. JA-3-3Ab 3898329 YP_474436.1 CDS CYA_0973 NC_007775.1 985155 986375 R identified by match to protein family HMM PF04286; hypothetical protein complement(985155..986375) Synechococcus sp. JA-3-3Ab 3898330 YP_474437.1 CDS CYA_0974 NC_007775.1 986439 987371 R hypothetical protein complement(986439..987371) Synechococcus sp. JA-3-3Ab 3898331 YP_474438.1 CDS CYA_0975 NC_007775.1 987514 989007 R identified by match to protein family HMM PF00395; S-layer protein complement(987514..989007) Synechococcus sp. JA-3-3Ab 3898332 YP_474439.1 CDS tas NC_007775.1 989224 990264 R identified by similarity to SP:Q46933; match to protein family HMM PF00248; aldo/keto reductase Tas complement(989224..990264) Synechococcus sp. JA-3-3Ab 3898333 YP_474440.1 CDS CYA_0977 NC_007775.1 990346 992028 R hypothetical protein complement(990346..992028) Synechococcus sp. JA-3-3Ab 3898334 YP_474441.1 CDS CYA_0978 NC_007775.1 992523 993647 D identified by match to protein family HMM PF00072; match to protein family HMM PF07228; response regulator 992523..993647 Synechococcus sp. JA-3-3Ab 3898335 YP_474442.1 CDS CYA_0979 NC_007775.1 993659 993928 R identified by match to protein family HMM PF01722; BolA/YrbA family protein complement(993659..993928) Synechococcus sp. JA-3-3Ab 3898336 YP_474443.1 CDS CYA_0981 NC_007775.1 994257 995468 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase complement(994257..995468) Synechococcus sp. JA-3-3Ab 3898338 YP_474444.1 CDS CYA_0982 NC_007775.1 995539 996033 R hypothetical protein complement(995539..996033) Synechococcus sp. JA-3-3Ab 3898339 YP_474445.1 CDS CYA_0983 NC_007775.1 996509 997660 R identified by match to protein family HMM PF00144; carboxylesterase complement(996509..997660) Synechococcus sp. JA-3-3Ab 3898340 YP_474446.1 CDS CYA_0984 NC_007775.1 997798 998757 D identified by similarity to SP:P52693; match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 997798..998757 Synechococcus sp. JA-3-3Ab 3898341 YP_474447.1 CDS CYA_0985 NC_007775.1 998871 999911 D identified by match to protein family HMM PF02885; hypothetical protein 998871..999911 Synechococcus sp. JA-3-3Ab 3898342 YP_474448.1 CDS CYA_0986 NC_007775.1 1000284 1001570 R identified by match to protein family HMM PF07498; Rho termination factor domain-containing protein complement(1000284..1001570) Synechococcus sp. JA-3-3Ab 3898343 YP_474449.1 CDS CYA_0987 NC_007775.1 1001623 1001730 R hypothetical protein complement(1001623..1001730) Synechococcus sp. JA-3-3Ab 3898344 YP_474450.1 CDS CYA_0989 NC_007775.1 1001745 1002821 D hypothetical protein 1001745..1002821 Synechococcus sp. JA-3-3Ab 3898345 YP_474451.1 CDS CYA_0988 NC_007775.1 1001774 1002013 R hypothetical protein complement(1001774..1002013) Synechococcus sp. JA-3-3Ab 3898346 YP_474452.1 CDS CYA_0990 NC_007775.1 1002934 1004052 D identified by match to protein family HMM PF01075; heptosyltransferase family protein 1002934..1004052 Synechococcus sp. JA-3-3Ab 3898309 YP_474453.1 CDS CYA_0991 NC_007775.1 1004332 1005240 D identified by match to protein family HMM PF00892; hypothetical protein 1004332..1005240 Synechococcus sp. JA-3-3Ab 3898310 YP_474454.1 CDS CYA_0992 NC_007775.1 1005261 1006382 R identified by match to protein family HMM PF00465; iron-containing alcohol dehydrogenase complement(1005261..1006382) Synechococcus sp. JA-3-3Ab 3898311 YP_474455.1 CDS pilM NC_007775.1 1006632 1007750 D identified by similarity to OMNI:NTL03PA05045; match to protein family HMM TIGR01175; type 4 fimbrial biogenesis protein PilM 1006632..1007750 Synechococcus sp. JA-3-3Ab 3898312 YP_474456.1 CDS pilN NC_007775.1 1007814 1008518 D identified by match to protein family HMM PF05137; type 4 fimbrial biogenesis protein PilN 1007814..1008518 Synechococcus sp. JA-3-3Ab 3898313 YP_474457.1 CDS CYA_0995 NC_007775.1 1008518 1009240 D hypothetical protein 1008518..1009240 Synechococcus sp. JA-3-3Ab 3898314 YP_474458.1 CDS CYA_0996 NC_007775.1 1009528 1011699 D identified by match to protein family HMM PF00263; match to protein family HMM PF07660; type IV pilus secretin PilQ 1009528..1011699 Synechococcus sp. JA-3-3Ab 3898315 YP_474459.1 CDS CYA_0997 NC_007775.1 1011746 1012510 D hypothetical protein 1011746..1012510 Synechococcus sp. JA-3-3Ab 3898316 YP_474460.1 CDS CYA_0998 NC_007775.1 1012515 1013081 R identified by similarity to GB:AAC97587.1; ISSoc4, transposase orfB complement(1012515..1013081) Synechococcus sp. JA-3-3Ab 3898317 YP_474461.1 CDS CYA_0999 NC_007775.1 1013063 1013461 R identified by similarity to PIR:AD2038; ISSoc4, transposase orfA complement(1013063..1013461) Synechococcus sp. JA-3-3Ab 3898318 YP_474462.1 CDS CYA_1000 NC_007775.1 1013568 1013966 D hypothetical protein 1013568..1013966 Synechococcus sp. JA-3-3Ab 3898319 YP_474463.1 CDS CYA_1001 NC_007775.1 1014352 1014918 R identified by similarity to PIR:AE2255; hypothetical protein complement(1014352..1014918) Synechococcus sp. JA-3-3Ab 3898320 YP_474464.1 CDS CYA_1002 NC_007775.1 1015046 1016581 D identified by match to protein family HMM PF00155; match to protein family HMM PF01041; match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711; Orn/Lys/Arg decarboxylase 1015046..1016581 Synechococcus sp. JA-3-3Ab 3898321 YP_474465.1 CDS CYA_1003 NC_007775.1 1016586 1018019 R identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; HlyC/CorC (HCC) family transporter complement(1016586..1018019) Synechococcus sp. JA-3-3Ab 3898322 YP_474466.1 CDS CYA_1004 NC_007775.1 1018222 1018578 R identified by match to protein family HMM PF03413; peptidase propeptide/YPEB domain-containing protein complement(1018222..1018578) Synechococcus sp. JA-3-3Ab 3898323 YP_474467.1 CDS ilvE NC_007775.1 1018844 1019764 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1018844..1019764 Synechococcus sp. JA-3-3Ab 3898324 YP_474468.1 CDS CYA_1006 NC_007775.1 1019842 1020354 D identified by similarity to PDB:1HGX_A; match to protein family HMM PF00156; purine phosphoribosyltransferase 1019842..1020354 Synechococcus sp. JA-3-3Ab 3898325 YP_474469.1 CDS CYA_1007 NC_007775.1 1020398 1024249 R identified by match to protein family HMM TIGR01444; FkbM family methyltransferase complement(1020398..1024249) Synechococcus sp. JA-3-3Ab 3898326 YP_474470.1 CDS CYA_1008 NC_007775.1 1025028 1025978 R hypothetical protein complement(1025028..1025978) Synechococcus sp. JA-3-3Ab 3898327 YP_474471.1 CDS CYA_1009 NC_007775.1 1025994 1026683 R identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase complement(1025994..1026683) Synechococcus sp. JA-3-3Ab 3898292 YP_474472.1 CDS CYA_1010 NC_007775.1 1027337 1027531 R hypothetical protein complement(1027337..1027531) Synechococcus sp. JA-3-3Ab 3898293 YP_474473.1 CDS CYA_1011 NC_007775.1 1027704 1029731 D identified by match to protein family HMM TIGR01444; FkbM family methyltransferase 1027704..1029731 Synechococcus sp. JA-3-3Ab 3898294 YP_474474.1 CDS CYA_1012 NC_007775.1 1029768 1032461 D macrocin-O-methyltransferase domain-containing protein 1029768..1032461 Synechococcus sp. JA-3-3Ab 3898295 YP_474475.1 CDS CYA_1013 NC_007775.1 1032528 1033253 R identified by similarity to PIR:AH2105; match to protein family HMM PF05685; hypothetical protein complement(1032528..1033253) Synechococcus sp. JA-3-3Ab 3898296 YP_474476.1 CDS lpxD NC_007775.1 1034023 1035054 R identified by match to protein family HMM PF00132; match to protein family HMM PF04613; match to protein family HMM TIGR01853; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(1034023..1035054) Synechococcus sp. JA-3-3Ab 3898298 YP_474477.1 CDS CYA_1016 NC_007775.1 1035070 1035588 R identified by similarity to GB:BAC08280.1; hypothetical protein complement(1035070..1035588) Synechococcus sp. JA-3-3Ab 3898299 YP_474478.1 CDS CYA_1019 NC_007775.1 1036398 1037417 D hypothetical protein 1036398..1037417 Synechococcus sp. JA-3-3Ab 3898302 YP_474479.1 CDS CYA_1020 NC_007775.1 1037440 1038135 D hypothetical protein 1037440..1038135 Synechococcus sp. JA-3-3Ab 3898303 YP_474480.1 CDS CYA_1021 NC_007775.1 1038333 1041368 D hypothetical protein 1038333..1041368 Synechococcus sp. JA-3-3Ab 3898304 YP_474481.1 CDS CYA_1022 NC_007775.1 1041547 1042437 D identified by match to protein family HMM PF00560; hypothetical protein 1041547..1042437 Synechococcus sp. JA-3-3Ab 3898305 YP_474482.1 CDS CYA_1023 NC_007775.1 1042530 1042799 D identified by similarity to GB:BAD80637.1; hypothetical protein 1042530..1042799 Synechococcus sp. JA-3-3Ab 3898306 YP_474483.1 CDS CYA_1024 NC_007775.1 1042833 1043561 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1042833..1043561 Synechococcus sp. JA-3-3Ab 3898307 YP_474484.1 CDS CYA_1025 NC_007775.1 1043739 1043951 D identified by match to protein family HMM PF02672; CP12 domain-containing protein 1043739..1043951 Synechococcus sp. JA-3-3Ab 3898308 YP_474485.1 CDS CYA_1026 NC_007775.1 1044010 1044813 R identified by similarity to GB:CAC28871.1; match to protein family HMM PF03239; iron permease complement(1044010..1044813) Synechococcus sp. JA-3-3Ab 3898273 YP_474486.1 CDS msrB NC_007775.1 1044863 1045273 R identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357; methionine-R-sulfoxide reductase complement(1044863..1045273) Synechococcus sp. JA-3-3Ab 3898274 YP_474487.1 CDS CYA_1028 NC_007775.1 1045718 1046161 D identified by similarity to GB:BAC08682.1; hypothetical protein 1045718..1046161 Synechococcus sp. JA-3-3Ab 3898275 YP_474488.1 CDS CYA_1029 NC_007775.1 1046250 1047260 D identified by match to protein family HMM PF00037; 4Fe-4S ferredoxin 1046250..1047260 Synechococcus sp. JA-3-3Ab 3898276 YP_474489.1 CDS CYA_1030 NC_007775.1 1047276 1049177 D identified by match to protein family HMM PF01424; R3H domain-containing protein 1047276..1049177 Synechococcus sp. JA-3-3Ab 3898277 YP_474490.1 CDS ubiA NC_007775.1 1049194 1050096 R UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; 4-hydroxybenzoate polyprenyltransferase complement(1049194..1050096) Synechococcus sp. JA-3-3Ab 3898278 YP_474491.1 CDS CYA_1033 NC_007775.1 1050354 1051103 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1050354..1051103 Synechococcus sp. JA-3-3Ab 3898279 YP_474492.1 CDS CYA_1032 NC_007775.1 1051100 1052437 R identified by match to protein family HMM PF01743; polyA polymerase family protein complement(1051100..1052437) Synechococcus sp. JA-3-3Ab 3898280 YP_474493.1 CDS hemH NC_007775.1 1052607 1053632 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(1052607..1053632) Synechococcus sp. JA-3-3Ab 3898281 YP_474494.1 CDS CYA_1035 NC_007775.1 1055040 1055432 R hypothetical protein complement(1055040..1055432) Synechococcus sp. JA-3-3Ab 3898283 YP_474495.1 CDS CYA_1037 NC_007775.1 1055745 1056233 D identified by similarity to PIR:AD2406; hypothetical protein 1055745..1056233 Synechococcus sp. JA-3-3Ab 3898284 YP_474496.1 CDS CYA_1038 NC_007775.1 1056280 1058187 D hypothetical protein 1056280..1058187 Synechococcus sp. JA-3-3Ab 3898285 YP_474497.1 CDS CYA_1039 NC_007775.1 1058181 1059176 D identified by match to protein family HMM PF04168; hypothetical protein 1058181..1059176 Synechococcus sp. JA-3-3Ab 3898286 YP_474498.1 CDS CYA_1040 NC_007775.1 1059442 1059936 D identified by match to protein family HMM PF00132; hexapaptide repeat-containing transferase 1059442..1059936 Synechococcus sp. JA-3-3Ab 3898287 YP_474499.1 CDS CYA_1041 NC_007775.1 1060292 1061749 R identified by match to protein family HMM PF04169; match to protein family HMM PF04174; hypothetical protein complement(1060292..1061749) Synechococcus sp. JA-3-3Ab 3898288 YP_474500.1 CDS CYA_1042 NC_007775.1 1061915 1063738 R hypothetical protein complement(1061915..1063738) Synechococcus sp. JA-3-3Ab 3898289 YP_474501.1 CDS CYA_1043 NC_007775.1 1063841 1064101 R identified by similarity to PIR:AB2345; hypothetical protein complement(1063841..1064101) Synechococcus sp. JA-3-3Ab 3898290 YP_474502.1 CDS CYA_1044 NC_007775.1 1064207 1065829 R identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976; S15 family X-Pro dipeptidyl-peptidase complement(1064207..1065829) Synechococcus sp. JA-3-3Ab 3898291 YP_474503.1 CDS CYA_1045 NC_007775.1 1066041 1066232 R hypothetical protein complement(1066041..1066232) Synechococcus sp. JA-3-3Ab 3898509 YP_474504.1 CDS CYA_1046 NC_007775.1 1066355 1066525 D hypothetical protein 1066355..1066525 Synechococcus sp. JA-3-3Ab 3898510 YP_474505.1 CDS CYA_1047 NC_007775.1 1066528 1067049 D identified by match to protein family HMM PF00583; acetyltransferase 1066528..1067049 Synechococcus sp. JA-3-3Ab 3898511 YP_474506.1 CDS phhB NC_007775.1 1067117 1067407 D 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 1067117..1067407 Synechococcus sp. JA-3-3Ab 3898512 YP_474507.1 CDS CYA_1049 NC_007775.1 1067688 1068644 D identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein 1067688..1068644 Synechococcus sp. JA-3-3Ab 3898513 YP_474508.1 CDS CYA_1050 NC_007775.1 1068748 1069734 D identified by similarity to GB:AAC36155.1; match to protein family HMM PF00005; ABC transporter ATP-binding protein 1068748..1069734 Synechococcus sp. JA-3-3Ab 3898514 YP_474509.1 CDS CYA_1051 NC_007775.1 1069764 1070897 R identified by match to protein family HMM PF00534; group 1 glycosyl transferase complement(1069764..1070897) Synechococcus sp. JA-3-3Ab 3898515 YP_474510.1 CDS CYA_1052 NC_007775.1 1070999 1071130 R hypothetical protein complement(1070999..1071130) Synechococcus sp. JA-3-3Ab 3898516 YP_474511.1 CDS CYA_1053 NC_007775.1 1071255 1071986 R identified by similarity to PIR:AF2006; hypothetical protein complement(1071255..1071986) Synechococcus sp. JA-3-3Ab 3898517 YP_474512.1 CDS CYA_1054 NC_007775.1 1071983 1072150 R hypothetical protein complement(1071983..1072150) Synechococcus sp. JA-3-3Ab 3898518 YP_474513.1 CDS CYA_1055 NC_007775.1 1072187 1072819 D identified by match to protein family HMM PF01209; UbiE/COQ5 family methlytransferase 1072187..1072819 Synechococcus sp. JA-3-3Ab 3898519 YP_474514.1 CDS thiG NC_007775.1 1072832 1073605 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(1072832..1073605) Synechococcus sp. JA-3-3Ab 3898520 YP_474515.1 CDS thiS NC_007775.1 1073705 1073902 R identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS complement(1073705..1073902) Synechococcus sp. JA-3-3Ab 3898521 YP_474516.1 CDS thiO NC_007775.1 1073890 1075026 R identified by match to protein family HMM PF01266; match to protein family HMM TIGR02352; glycine oxidase ThiO complement(1073890..1075026) Synechococcus sp. JA-3-3Ab 3898522 YP_474517.1 CDS CYA_1059 NC_007775.1 1075232 1077295 R identified by similarity to GB:AAA27331.1; match to protein family HMM PF00149; match to protein family HMM PF02872; 5'-nucleotidase complement(1075232..1077295) Synechococcus sp. JA-3-3Ab 3898523 YP_474518.1 CDS CYA_1060 NC_007775.1 1077377 1077709 R identified by match to protein family HMM PF01035; methylated-DNA-[protein]-cysteine S-methyltransferase complement(1077377..1077709) Synechococcus sp. JA-3-3Ab 3898524 YP_474519.1 CDS CYA_1061 NC_007775.1 1077738 1078295 D hypothetical protein 1077738..1078295 Synechococcus sp. JA-3-3Ab 3898525 YP_474520.1 CDS CYA_1062 NC_007775.1 1078417 1079034 D identified by similarity to SP:P27650; match to protein family HMM PF04955; HupE/UreJ family protein 1078417..1079034 Synechococcus sp. JA-3-3Ab 3898526 YP_474521.1 CDS ndk NC_007775.1 1079109 1079558 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1079109..1079558 Synechococcus sp. JA-3-3Ab 3898527 YP_474522.1 CDS CYA_1064 NC_007775.1 1079821 1081194 R identified by match to protein family HMM PF00005; taurine ABC transporter ATP-binding protein complement(1079821..1081194) Synechococcus sp. JA-3-3Ab 3898452 YP_474523.1 CDS CYA_1065 NC_007775.1 1081213 1082940 R identified by match to protein family HMM PF00528; taurine ABC transporter permease complement(1081213..1082940) Synechococcus sp. JA-3-3Ab 3898453 YP_474524.1 CDS CYA_1066 NC_007775.1 1083027 1083311 R identified by similarity to PIR:AD2089; hypothetical protein complement(1083027..1083311) Synechococcus sp. JA-3-3Ab 3898454 YP_474525.1 CDS CYA_1067 NC_007775.1 1083395 1084351 R hypothetical protein complement(1083395..1084351) Synechococcus sp. JA-3-3Ab 3898455 YP_474526.1 CDS CYA_1068 NC_007775.1 1084726 1086174 R identified by similarity to GB:AAC60447.2; match to protein family HMM PF03055; lignostilbene-alpha,beta-dioxygenase complement(1084726..1086174) Synechococcus sp. JA-3-3Ab 3898456 YP_474527.1 CDS ffh NC_007775.1 1086341 1087792 D identified by similarity to SP:P37105; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 1086341..1087792 Synechococcus sp. JA-3-3Ab 3898457 YP_474528.1 CDS CYA_1071 NC_007775.1 1087802 1088257 D identified by match to protein family HMM PF00588; RNA methyltransferase 1087802..1088257 Synechococcus sp. JA-3-3Ab 3898458 YP_474529.1 CDS CYA_1070 NC_007775.1 1088233 1088388 R hypothetical protein complement(1088233..1088388) Synechococcus sp. JA-3-3Ab 3898459 YP_474530.1 CDS CYA_1072 NC_007775.1 1088473 1090218 D identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 1088473..1090218 Synechococcus sp. JA-3-3Ab 3898460 YP_474531.1 CDS CYA_1073 NC_007775.1 1090358 1091581 R identified by match to protein family HMM PF00535; match to protein family HMM PF04138; glycosyl transferase complement(1090358..1091581) Synechococcus sp. JA-3-3Ab 3898461 YP_474532.1 CDS CYA_1074 NC_007775.1 1091762 1094227 R identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277; HDIG domain-containing protein complement(1091762..1094227) Synechococcus sp. JA-3-3Ab 3898462 YP_474533.1 CDS CYA_1075 NC_007775.1 1094296 1094745 R identified by similarity to GB:BAD79760.1; hypothetical protein complement(1094296..1094745) Synechococcus sp. JA-3-3Ab 3898463 YP_474534.1 CDS CYA_1076 NC_007775.1 1094789 1095538 R identified by similarity to SP:P39144; match to protein family HMM PF01648; 4'-phosphopantetheinyl transferase complement(1094789..1095538) Synechococcus sp. JA-3-3Ab 3898464 YP_474535.1 CDS CYA_1077 NC_007775.1 1095621 1096982 D identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; cell envelope-related function transcriptional attenuator 1095621..1096982 Synechococcus sp. JA-3-3Ab 3898465 YP_474536.1 CDS htpG NC_007775.1 1097087 1098946 D molecular chaperone; heat shock protein 90 1097087..1098946 Synechococcus sp. JA-3-3Ab 3898466 YP_474537.1 CDS ribH NC_007775.1 1098940 1099530 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(1098940..1099530) Synechococcus sp. JA-3-3Ab 3898467 YP_474538.1 CDS CYA_1081 NC_007775.1 1099814 1100842 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1099814..1100842 Synechococcus sp. JA-3-3Ab 3898468 YP_474539.1 CDS CYA_1080 NC_007775.1 1100724 1103042 R identified by match to protein family HMM PF07719; hypothetical protein complement(1100724..1103042) Synechococcus sp. JA-3-3Ab 3898469 YP_474540.1 CDS CYA_1082 NC_007775.1 1103204 1104745 D identified by match to protein family HMM PF04244; deoxyribodipyrimidine photolyase family protein 1103204..1104745 Synechococcus sp. JA-3-3Ab 3898470 YP_474541.1 CDS nrdR NC_007775.1 1104814 1105416 D identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 1104814..1105416 Synechococcus sp. JA-3-3Ab 3898471 YP_474542.1 CDS CYA_1084 NC_007775.1 1105629 1106477 D hypothetical protein 1105629..1106477 Synechococcus sp. JA-3-3Ab 3898438 YP_474543.1 CDS CYA_1090 NC_007775.1 1111862 1112482 R identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein complement(1111862..1112482) Synechococcus sp. JA-3-3Ab 3898444 YP_474544.1 CDS lgt-1 NC_007775.1 1112486 1113340 R identified by similarity to SP:O34752; match to protein family HMM PF01790; match to protein family HMM TIGR00544; prolipoprotein diacylglyceryl transferase complement(1112486..1113340) Synechococcus sp. JA-3-3Ab 3898445 YP_474545.1 CDS recA NC_007775.1 1113642 1114718 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1113642..1114718 Synechococcus sp. JA-3-3Ab 3898446 YP_474546.1 CDS CYA_1093 NC_007775.1 1114734 1115546 R identified by match to protein family HMM PF00588; match to protein family HMM PF08032; RNA methyltransferase complement(1114734..1115546) Synechococcus sp. JA-3-3Ab 3898447 YP_474547.1 CDS sun NC_007775.1 1115580 1116926 R identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; ribosomal RNA small subunit methyltransferase B complement(1115580..1116926) Synechococcus sp. JA-3-3Ab 3898448 YP_474548.1 CDS CYA_1095 NC_007775.1 1118160 1118549 R hypothetical protein complement(1118160..1118549) Synechococcus sp. JA-3-3Ab 3898450 YP_474549.1 CDS CYA_1097 NC_007775.1 1118585 1121986 R identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456; match to protein family HMM TIGR02457; trehalose synthase/ maltokinase complement(1118585..1121986) Synechococcus sp. JA-3-3Ab 3898451 YP_474550.1 CDS CYA_1098 NC_007775.1 1122234 1123547 R hypothetical protein complement(1122234..1123547) Synechococcus sp. JA-3-3Ab 3898424 YP_474551.1 CDS CYA_1099 NC_007775.1 1123531 1124484 R identified by match to protein family HMM PF01242; 6-pyruvoyl-tetrahydropterin synthase complement(1123531..1124484) Synechococcus sp. JA-3-3Ab 3898425 YP_474552.1 CDS hom NC_007775.1 1124636 1125982 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1124636..1125982 Synechococcus sp. JA-3-3Ab 3898426 YP_474553.1 CDS hemG NC_007775.1 1126034 1127491 D identified by match to protein family HMM PF01593; match to protein family HMM TIGR00562; protoporphyrinogen oxidase 1126034..1127491 Synechococcus sp. JA-3-3Ab 3898427 YP_474554.1 CDS CYA_1103 NC_007775.1 1127421 1128536 D identified by similarity to PIR:AH1904; hypothetical protein 1127421..1128536 Synechococcus sp. JA-3-3Ab 3898428 YP_474555.1 CDS CYA_1102 NC_007775.1 1128533 1128991 R identified by match to protein family HMM PF01124; MAPEG family protein complement(1128533..1128991) Synechococcus sp. JA-3-3Ab 3898429 YP_474556.1 CDS CYA_1104 NC_007775.1 1129063 1131117 R identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345; arsenite-antimonite ArsAB efflux family transporter ATP-binding protein ArsAB complement(1129063..1131117) Synechococcus sp. JA-3-3Ab 3898430 YP_474557.1 CDS CYA_1105 NC_007775.1 1131148 1131801 R hypothetical protein complement(1131148..1131801) Synechococcus sp. JA-3-3Ab 3898431 YP_474558.1 CDS CYA_1106 NC_007775.1 1131805 1132674 R identified by similarity to SP:P07324; iron-sulfur cluster-binding protein complement(1131805..1132674) Synechococcus sp. JA-3-3Ab 3898432 YP_474559.1 CDS CYA_1107 NC_007775.1 1132684 1133100 R identified by similarity to SP:P07324; match to protein family HMM PF07845; iron-sulfur cluster-binding protein complement(1132684..1133100) Synechococcus sp. JA-3-3Ab 3898433 YP_474560.1 CDS CYA_1108 NC_007775.1 1133198 1135141 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein complement(1133198..1135141) Synechococcus sp. JA-3-3Ab 3898434 YP_474561.1 CDS CYA_1109 NC_007775.1 1135414 1137369 R identified by match to protein family HMM PF07602; hypothetical protein complement(1135414..1137369) Synechococcus sp. JA-3-3Ab 3898435 YP_474562.1 CDS CYA_1110 NC_007775.1 1137368 1138585 D identified by similarity to GB:BAC08389.1; match to protein family HMM PF00805; pentapeptide repeat-containing protein 1137368..1138585 Synechococcus sp. JA-3-3Ab 3898436 YP_474563.1 CDS CYA_1111 NC_007775.1 1138774 1139904 D identified by match to protein family HMM PF03739; YjgP/YjgQ family protein 1138774..1139904 Synechococcus sp. JA-3-3Ab 3898437 YP_474564.1 CDS ald NC_007775.1 1140938 1142029 D identified by match to protein family HMM PF01262; match to protein family HMM PF02826; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase 1140938..1142029 Synechococcus sp. JA-3-3Ab 3898386 YP_474565.1 CDS CYA_1113 NC_007775.1 1142039 1142671 R identified by match to protein family HMM PF01612; 3'-5' exonuclease complement(1142039..1142671) Synechococcus sp. JA-3-3Ab 3898387 YP_474566.1 CDS rpsN NC_007775.1 1142911 1143216 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(1142911..1143216) Synechococcus sp. JA-3-3Ab 3898388 YP_474567.1 CDS CYA_1115 NC_007775.1 1143110 1143379 D hypothetical protein 1143110..1143379 Synechococcus sp. JA-3-3Ab 3898389 YP_474568.1 CDS CYA_1117 NC_007775.1 1143361 1143684 D hypothetical protein 1143361..1143684 Synechococcus sp. JA-3-3Ab 3898390 YP_474569.1 CDS CYA_1116 NC_007775.1 1143681 1145201 R identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; GTP-binding protein complement(1143681..1145201) Synechococcus sp. JA-3-3Ab 3898391 YP_474570.1 CDS CYA_1118 NC_007775.1 1145282 1145773 R hypothetical protein complement(1145282..1145773) Synechococcus sp. JA-3-3Ab 3898392 YP_474571.1 CDS CYA_1119 NC_007775.1 1146148 1146600 D hypothetical protein 1146148..1146600 Synechococcus sp. JA-3-3Ab 3898393 YP_474572.1 CDS recJ-1 NC_007775.1 1146623 1148851 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ complement(1146623..1148851) Synechococcus sp. JA-3-3Ab 3898394 YP_474573.1 CDS CYA_1121 NC_007775.1 1148888 1148995 R hypothetical protein complement(1148888..1148995) Synechococcus sp. JA-3-3Ab 3898395 YP_474574.1 CDS CYA_1122 NC_007775.1 1149396 1150319 D identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 1149396..1150319 Synechococcus sp. JA-3-3Ab 3898396 YP_474575.1 CDS cysH NC_007775.1 1150395 1151141 D identified by match to protein family HMM PF01507; match to protein family HMM TIGR00434; phosophoadenylyl-sulfate reductase 1150395..1151141 Synechococcus sp. JA-3-3Ab 3898397 YP_474576.1 CDS CYA_1124 NC_007775.1 1151170 1151457 D identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase domain-containing protein 1151170..1151457 Synechococcus sp. JA-3-3Ab 3898398 YP_474577.1 CDS CYA_1125 NC_007775.1 1151589 1151933 D identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 1151589..1151933 Synechococcus sp. JA-3-3Ab 3898399 YP_474578.1 CDS CYA_1126 NC_007775.1 1152554 1152952 D identified by similarity to PIR:AD2038; ISSoc4, transposase orfA 1152554..1152952 Synechococcus sp. JA-3-3Ab 3898400 YP_474579.1 CDS CYA_1127 NC_007775.1 1152934 1153500 D identified by similarity to GB:AAC97587.1; ISSoc4, transposase orfB 1152934..1153500 Synechococcus sp. JA-3-3Ab 3898401 YP_474580.1 CDS CYA_1128 NC_007775.1 1153631 1154107 R identified by match to protein family HMM PF01797; ISSoc3, orfA transposase complement(1153631..1154107) Synechococcus sp. JA-3-3Ab 3898402 YP_474581.1 CDS CYA_1131 NC_007775.1 1155508 1156698 D identified by match to protein family HMM PF07690; major facilitator transporter 1155508..1156698 Synechococcus sp. JA-3-3Ab 3898819 YP_474582.1 CDS CYA_1130 NC_007775.1 1156649 1157719 R identified by match to protein family HMM PF00563; EAL domain-containing protein complement(1156649..1157719) Synechococcus sp. JA-3-3Ab 3898820 YP_474583.1 CDS CYA_1132 NC_007775.1 1157890 1158648 R identified by similarity to SP:P72933; match to protein family HMM PF00753; glyoxalase II family protein complement(1157890..1158648) Synechococcus sp. JA-3-3Ab 3898821 YP_474584.1 CDS CYA_1133 NC_007775.1 1158655 1158912 R identified by similarity to GB:BAC91454.1; hypothetical protein complement(1158655..1158912) Synechococcus sp. JA-3-3Ab 3898822 YP_474585.1 CDS CYA_1134 NC_007775.1 1159046 1159444 R identified by match to protein family HMM PF00226; DnaJ domain-containing protein complement(1159046..1159444) Synechococcus sp. JA-3-3Ab 3898823 YP_474586.1 CDS rpmF NC_007775.1 1159539 1159721 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(1159539..1159721) Synechococcus sp. JA-3-3Ab 3898824 YP_474587.1 CDS CYA_1136 NC_007775.1 1160019 1161290 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc3, orfB transposase complement(1160019..1161290) Synechococcus sp. JA-3-3Ab 3898825 YP_474588.1 CDS CYA_1137 NC_007775.1 1161246 1161722 D identified by match to protein family HMM PF01797; ISSoc3, orfA transposase 1161246..1161722 Synechococcus sp. JA-3-3Ab 3898826 YP_474589.1 CDS CYA_1138 NC_007775.1 1161810 1162904 D CsgG family protein 1161810..1162904 Synechococcus sp. JA-3-3Ab 3898827 YP_474590.1 CDS CYA_1139 NC_007775.1 1163149 1163808 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02254; match to protein family HMM PF05368; match to protein family HMM PF07993; 3-beta hydroxysteroid dehydrogenase/isomerase family protein 1163149..1163808 Synechococcus sp. JA-3-3Ab 3898828 YP_474591.1 CDS CYA_1140 NC_007775.1 1163923 1166457 D hypothetical protein 1163923..1166457 Synechococcus sp. JA-3-3Ab 3898829 YP_474592.1 CDS CYA_1141 NC_007775.1 1166464 1166559 D hypothetical protein 1166464..1166559 Synechococcus sp. JA-3-3Ab 3898830 YP_474593.1 CDS CYA_1142 NC_007775.1 1166505 1166915 D hypothetical protein 1166505..1166915 Synechococcus sp. JA-3-3Ab 3898831 YP_474594.1 CDS CYA_1143 NC_007775.1 1167658 1167912 D identified by match to protein family HMM PF01844; HNH endonuclease domain-containing protein 1167658..1167912 Synechococcus sp. JA-3-3Ab 3898832 YP_474595.1 CDS CYA_1144 NC_007775.1 1167978 1168946 R identified by match to protein family HMM PF01571; aminomethyltransferase complement(1167978..1168946) Synechococcus sp. JA-3-3Ab 3898833 YP_474596.1 CDS CYA_1145 NC_007775.1 1169041 1170579 D hypothetical protein 1169041..1170579 Synechococcus sp. JA-3-3Ab 3898834 YP_474597.1 CDS CYA_1147 NC_007775.1 1170710 1170904 D hypothetical protein 1170710..1170904 Synechococcus sp. JA-3-3Ab 3898835 YP_474598.1 CDS CYA_1146 NC_007775.1 1170901 1171863 R identified by match to protein family HMM PF03547; auxin efflux carrier family protein complement(1170901..1171863) Synechococcus sp. JA-3-3Ab 3898836 YP_474599.1 CDS ispH NC_007775.1 1171869 1173149 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(1171869..1173149) Synechococcus sp. JA-3-3Ab 3898837 YP_474600.1 CDS CYA_1149 NC_007775.1 1173297 1173572 R hypothetical protein complement(1173297..1173572) Synechococcus sp. JA-3-3Ab 3898858 YP_474601.1 CDS CYA_1150 NC_007775.1 1173595 1174071 R identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein complement(1173595..1174071) Synechococcus sp. JA-3-3Ab 3898859 YP_474602.1 CDS glmU NC_007775.1 1174189 1176054 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(1174189..1176054) Synechococcus sp. JA-3-3Ab 3898860 YP_474603.1 CDS CYA_1152 NC_007775.1 1176173 1176601 D hypothetical protein 1176173..1176601 Synechococcus sp. JA-3-3Ab 3898861 YP_474604.1 CDS CYA_1153 NC_007775.1 1176916 1177371 D identified by match to protein family HMM PF00355; match to protein family HMM TIGR01409; Rieske family iron-sulfur cluster-binding protein 1176916..1177371 Synechococcus sp. JA-3-3Ab 3898862 YP_474605.1 CDS CYA_1154 NC_007775.1 1177432 1178553 D identified by match to protein family HMM PF00534; glycoside hydrolase family protein 1177432..1178553 Synechococcus sp. JA-3-3Ab 3898863 YP_474606.1 CDS CYA_1155 NC_007775.1 1178651 1179544 D identified by match to protein family HMM PF05239; PRC-barrel domain-containing protein 1178651..1179544 Synechococcus sp. JA-3-3Ab 3898864 YP_474607.1 CDS CYA_1156 NC_007775.1 1179716 1180696 R identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase complement(1179716..1180696) Synechococcus sp. JA-3-3Ab 3898865 YP_474608.1 CDS infA NC_007775.1 1180726 1180950 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(1180726..1180950) Synechococcus sp. JA-3-3Ab 3898866 YP_474609.1 CDS map-2 NC_007775.1 1181081 1181854 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential; methionine aminopeptidase complement(1181081..1181854) Synechococcus sp. JA-3-3Ab 3898867 YP_474610.1 CDS adk NC_007775.1 1181893 1182474 R identified by similarity to SP:P27142; match to protein family HMM PF00406; match to protein family HMM TIGR01351; adenylate kinase complement(1181893..1182474) Synechococcus sp. JA-3-3Ab 3898868 YP_474611.1 CDS secY NC_007775.1 1182474 1183772 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(1182474..1183772) Synechococcus sp. JA-3-3Ab 3898869 YP_474612.1 CDS rplO NC_007775.1 1183881 1184354 R late assembly protein; 50S ribosomal protein L15 complement(1183881..1184354) Synechococcus sp. JA-3-3Ab 3898870 YP_474613.1 CDS rpsE NC_007775.1 1184378 1184914 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(1184378..1184914) Synechococcus sp. JA-3-3Ab 3898871 YP_474614.1 CDS rplR NC_007775.1 1184933 1185301 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(1184933..1185301) Synechococcus sp. JA-3-3Ab 3898872 YP_474615.1 CDS rplF NC_007775.1 1185304 1185849 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(1185304..1185849) Synechococcus sp. JA-3-3Ab 3898873 YP_474616.1 CDS rpsH NC_007775.1 1185876 1186280 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(1185876..1186280) Synechococcus sp. JA-3-3Ab 3898874 YP_474617.1 CDS rplE NC_007775.1 1186341 1186883 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(1186341..1186883) Synechococcus sp. JA-3-3Ab 3898875 YP_474618.1 CDS rplX NC_007775.1 1186940 1187338 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(1186940..1187338) Synechococcus sp. JA-3-3Ab 3898876 YP_474619.1 CDS rplN NC_007775.1 1187338 1187706 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(1187338..1187706) Synechococcus sp. JA-3-3Ab 3898877 YP_474620.1 CDS rpsQ NC_007775.1 1187703 1187954 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(1187703..1187954) Synechococcus sp. JA-3-3Ab 3898878 YP_474621.1 CDS rpmC NC_007775.1 1187954 1188190 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(1187954..1188190) Synechococcus sp. JA-3-3Ab 3898879 YP_474622.1 CDS rplP NC_007775.1 1188208 1188684 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(1188208..1188684) Synechococcus sp. JA-3-3Ab 3898880 YP_474623.1 CDS rpsC NC_007775.1 1188740 1189486 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(1188740..1189486) Synechococcus sp. JA-3-3Ab 3898881 YP_474624.1 CDS rplV NC_007775.1 1189528 1189899 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(1189528..1189899) Synechococcus sp. JA-3-3Ab 3898882 YP_474625.1 CDS rpsS NC_007775.1 1189942 1190223 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(1189942..1190223) Synechococcus sp. JA-3-3Ab 3898883 YP_474626.1 CDS rplB NC_007775.1 1190302 1191186 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(1190302..1191186) Synechococcus sp. JA-3-3Ab 3898884 YP_474627.1 CDS rplW NC_007775.1 1191247 1191546 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(1191247..1191546) Synechococcus sp. JA-3-3Ab 3898885 YP_474628.1 CDS rplD NC_007775.1 1191539 1192519 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(1191539..1192519) Synechococcus sp. JA-3-3Ab 3898886 YP_474629.1 CDS rplC NC_007775.1 1192571 1193215 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(1192571..1193215) Synechococcus sp. JA-3-3Ab 3898887 YP_474630.1 CDS CYA_1179 NC_007775.1 1193692 1195644 D hypothetical protein 1193692..1195644 Synechococcus sp. JA-3-3Ab 3898888 YP_474631.1 CDS CYA_1181 NC_007775.1 1196824 1198029 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc7, transposase 1196824..1198029 Synechococcus sp. JA-3-3Ab 3898890 YP_474632.1 CDS CYA_1182 NC_007775.1 1198072 1198404 D identified by similarity to GB:BAC91517.1; hypothetical protein 1198072..1198404 Synechococcus sp. JA-3-3Ab 3898891 YP_474633.1 CDS CYA_1183 NC_007775.1 1198401 1199069 D hypothetical protein 1198401..1199069 Synechococcus sp. JA-3-3Ab 3898892 YP_474634.1 CDS CYA_1184 NC_007775.1 1199237 1199788 D hypothetical protein 1199237..1199788 Synechococcus sp. JA-3-3Ab 3898893 YP_474635.1 CDS CYA_1185 NC_007775.1 1199739 1199873 D hypothetical protein 1199739..1199873 Synechococcus sp. JA-3-3Ab 3898894 YP_474636.1 CDS metK NC_007775.1 1200073 1201317 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(1200073..1201317) Synechococcus sp. JA-3-3Ab 3898895 YP_474637.1 CDS CYA_1187 NC_007775.1 1201814 1202182 R lipoprotein complement(1201814..1202182) Synechococcus sp. JA-3-3Ab 3898896 YP_474638.1 CDS cobO-1 NC_007775.1 1202372 1203058 D identified by match to protein family HMM PF02572; match to protein family HMM TIGR00708; cob(I)alamin adenosyltransferase 1202372..1203058 Synechococcus sp. JA-3-3Ab 3898897 YP_474639.1 CDS cobB NC_007775.1 1203076 1204482 D responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 1203076..1204482 Synechococcus sp. JA-3-3Ab 3898898 YP_474640.1 CDS CYA_1190 NC_007775.1 1205228 1205575 D hypothetical protein 1205228..1205575 Synechococcus sp. JA-3-3Ab 3898899 YP_474641.1 CDS CYA_1192 NC_007775.1 1205839 1206003 R hypothetical protein complement(1205839..1206003) Synechococcus sp. JA-3-3Ab 3898901 YP_474642.1 CDS clpP NC_007775.1 1206093 1206695 D identified by match to protein family HMM PF00574; match to protein family HMM TIGR00493; ATP-dependent Clp protease, proteolytic subunit ClpP 1206093..1206695 Synechococcus sp. JA-3-3Ab 3898902 YP_474643.1 CDS rbcL NC_007775.1 1207204 1208628 D type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase 1207204..1208628 Synechococcus sp. JA-3-3Ab 3898903 YP_474644.1 CDS rbcX NC_007775.1 1208699 1209106 D identified by match to protein family HMM PF02341; chaperon-like protein RbcX 1208699..1209106 Synechococcus sp. JA-3-3Ab 3898904 YP_474645.1 CDS cbbS NC_007775.1 1209115 1209447 D identified by match to protein family HMM PF00101; ribulose bisphosphate carboxylase, small subunit 1209115..1209447 Synechococcus sp. JA-3-3Ab 3898905 YP_474646.1 CDS CYA_1197 NC_007775.1 1209705 1210511 R identified by match to protein family HMM PF01940; match to protein family HMM TIGR00297; hypothetical protein complement(1209705..1210511) Synechococcus sp. JA-3-3Ab 3898906 YP_474647.1 CDS CYA_1200 NC_007775.1 1210661 1211167 D hypothetical protein 1210661..1211167 Synechococcus sp. JA-3-3Ab 3898908 YP_474648.1 CDS CYA_1199 NC_007775.1 1210709 1211260 R hypothetical protein complement(1210709..1211260) Synechococcus sp. JA-3-3Ab 3898909 YP_474649.1 CDS CYA_1201 NC_007775.1 1211787 1212764 D identified by match to protein family HMM PF02562; PhoH family protein 1211787..1212764 Synechococcus sp. JA-3-3Ab 3898910 YP_474650.1 CDS CYA_1203 NC_007775.1 1212761 1213486 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02252; haloacid dehalogenase 1212761..1213486 Synechococcus sp. JA-3-3Ab 3898911 YP_474651.1 CDS CYA_1202 NC_007775.1 1213464 1214252 R identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase complement(1213464..1214252) Synechococcus sp. JA-3-3Ab 3898912 YP_474652.1 CDS CYA_1204 NC_007775.1 1214240 1214983 R identified by match to protein family HMM PF01553; acyltransferase family protein complement(1214240..1214983) Synechococcus sp. JA-3-3Ab 3898913 YP_474653.1 CDS cobO-2 NC_007775.1 1214995 1216128 R identified by match to protein family HMM PF02572; hypothetical protein complement(1214995..1216128) Synechococcus sp. JA-3-3Ab 3898914 YP_474654.1 CDS CYA_1206 NC_007775.1 1216339 1217253 D identified by similarity to SP:P16703; match to protein family HMM PF00291; match to protein family HMM TIGR01136; cysteine synthase B 1216339..1217253 Synechococcus sp. JA-3-3Ab 3899279 YP_474655.1 CDS CYA_1208 NC_007775.1 1217481 1217972 R identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein complement(1217481..1217972) Synechococcus sp. JA-3-3Ab 3899281 YP_474656.1 CDS CYA_1209 NC_007775.1 1218655 1219383 D identified by match to protein family HMM PF00005; hydrophobic amino acid uptake transporter ABC transporter family ATP-binding protein 1218655..1219383 Synechococcus sp. JA-3-3Ab 3899282 YP_474657.1 CDS CYA_1210 NC_007775.1 1219396 1220859 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(1219396..1220859) Synechococcus sp. JA-3-3Ab 3899283 YP_474658.1 CDS CYA_1211 NC_007775.1 1221034 1222236 D identified by match to protein family HMM PF03739; YjgP/YjgQ permease 1221034..1222236 Synechococcus sp. JA-3-3Ab 3899284 YP_474659.1 CDS CYA_1212 NC_007775.1 1222248 1223261 R identified by similarity to SP:P39665; phosphate ABC transporter substrate-binding protein complement(1222248..1223261) Synechococcus sp. JA-3-3Ab 3899285 YP_474660.1 CDS CYA_1213 NC_007775.1 1223354 1225405 R identified by match to protein family HMM PF00773; VacB/RNB family exoribonuclease complement(1223354..1225405) Synechococcus sp. JA-3-3Ab 3899286 YP_474661.1 CDS CYA_1214 NC_007775.1 1225785 1226417 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family DNA-binding response regulator 1225785..1226417 Synechococcus sp. JA-3-3Ab 3899287 YP_474662.1 CDS CYA_1215 NC_007775.1 1226617 1227825 D identified by match to protein family HMM PF04422; match to protein family HMM PF04432; coenzyme F420 hydrogenase/dehydrogenase family protein 1226617..1227825 Synechococcus sp. JA-3-3Ab 3899288 YP_474663.1 CDS CYA_1216 NC_007775.1 1227848 1229044 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(1227848..1229044) Synechococcus sp. JA-3-3Ab 3899289 YP_474664.1 CDS engA NC_007775.1 1229210 1230589 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1229210..1230589 Synechococcus sp. JA-3-3Ab 3899290 YP_474665.1 CDS smpB NC_007775.1 1230625 1231089 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1230625..1231089 Synechococcus sp. JA-3-3Ab 3899291 YP_474666.1 CDS CYA_1219 NC_007775.1 1231275 1231877 R identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase complement(1231275..1231877) Synechococcus sp. JA-3-3Ab 3899292 YP_474667.1 CDS era NC_007775.1 1231949 1233025 R identified by similarity to SP:P42182; match to protein family HMM PF01926; match to protein family HMM PF07650; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436; match to protein family HMM TIGR00650; GTP-binding protein Era complement(1231949..1233025) Synechococcus sp. JA-3-3Ab 3899293 YP_474668.1 CDS CYA_1221 NC_007775.1 1233034 1234773 R identified by match to protein family HMM TIGR02669; SpoIID/LytB domain-containing protein complement(1233034..1234773) Synechococcus sp. JA-3-3Ab 3899294 YP_474669.1 CDS CYA_1223 NC_007775.1 1235330 1235773 R Bdr protein complement(1235330..1235773) Synechococcus sp. JA-3-3Ab 3899334 YP_474670.1 CDS CYA_1224 NC_007775.1 1235827 1236822 R identified by match to protein family HMM PF07726; match to protein family HMM PF07728; AAA ATPase complement(1235827..1236822) Synechococcus sp. JA-3-3Ab 3899335 YP_474671.1 CDS CYA_1226 NC_007775.1 1236952 1237392 D identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; rrf2 family protein 1236952..1237392 Synechococcus sp. JA-3-3Ab 3899336 YP_474672.1 CDS CYA_1225 NC_007775.1 1237389 1237547 R hypothetical protein complement(1237389..1237547) Synechococcus sp. JA-3-3Ab 3899337 YP_474673.1 CDS CYA_1227 NC_007775.1 1237546 1238460 D identified by similarity to SP:P46228; match to protein family HMM PF00575; 30S ribosomal protein S1 1237546..1238460 Synechococcus sp. JA-3-3Ab 3899338 YP_474674.1 CDS CYA_1228 NC_007775.1 1238961 1240181 D identified by match to protein family HMM PF00395; S-layer protein 1238961..1240181 Synechococcus sp. JA-3-3Ab 3899339 YP_474675.1 CDS CYA_1229 NC_007775.1 1240339 1240980 R identified by match to protein family HMM PF06055; ExoD family protein complement(1240339..1240980) Synechococcus sp. JA-3-3Ab 3899340 YP_474676.1 CDS CYA_1230 NC_007775.1 1241544 1242302 R identified by similarity to SP:P55149; match to protein family HMM PF06386; GvpL/GvpF family gas vesicle protein complement(1241544..1242302) Synechococcus sp. JA-3-3Ab 3899341 YP_474677.1 CDS CYA_1231 NC_007775.1 1242268 1243389 R identified by match to protein family HMM PF00483; nucleotidyl transferase family protein complement(1242268..1243389) Synechococcus sp. JA-3-3Ab 3899342 YP_474678.1 CDS hisG NC_007775.1 1243652 1244401 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 1243652..1244401 Synechococcus sp. JA-3-3Ab 3899343 YP_474679.1 CDS psbO NC_007775.1 1244601 1245395 D identified by similarity to SP:P55221; match to protein family HMM PF01716; photosystem II manganese-stabilizing protein 1244601..1245395 Synechococcus sp. JA-3-3Ab 3899344 YP_474680.1 CDS CYA_1234 NC_007775.1 1245414 1245695 D hypothetical protein 1245414..1245695 Synechococcus sp. JA-3-3Ab 3899345 YP_474681.1 CDS CYA_1235 NC_007775.1 1246105 1247484 D lipoprotein 1246105..1247484 Synechococcus sp. JA-3-3Ab 3899346 YP_474682.1 CDS CYA_1236 NC_007775.1 1247523 1247939 D identified by similarity to GB:BAD79565.1; hypothetical protein 1247523..1247939 Synechococcus sp. JA-3-3Ab 3899347 YP_474683.1 CDS CYA_1237 NC_007775.1 1247911 1249035 D identified by similarity to SP:P23861; match to protein family HMM TIGR01409; polyamine ABC transporter polyamine-binding protein 1247911..1249035 Synechococcus sp. JA-3-3Ab 3899348 YP_474684.1 CDS tig NC_007775.1 1249105 1250778 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(1249105..1250778) Synechococcus sp. JA-3-3Ab 3899349 YP_474685.1 CDS CYA_1239 NC_007775.1 1250867 1251250 R hypothetical protein complement(1250867..1251250) Synechococcus sp. JA-3-3Ab 3899350 YP_474686.1 CDS CYA_1240 NC_007775.1 1251335 1252369 R identified by match to protein family HMM PF01578; cytochrome c assembly protein complement(1251335..1252369) Synechococcus sp. JA-3-3Ab 3899351 YP_474687.1 CDS CYA_1241 NC_007775.1 1252474 1253853 D hypothetical protein 1252474..1253853 Synechococcus sp. JA-3-3Ab 3899352 YP_474688.1 CDS CYA_1243 NC_007775.1 1254523 1255479 D identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; RNA polymerase sigma factor 1254523..1255479 Synechococcus sp. JA-3-3Ab 3899353 YP_474689.1 CDS gcvT NC_007775.1 1255463 1256599 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(1255463..1256599) Synechococcus sp. JA-3-3Ab 3899374 YP_474690.1 CDS gloA NC_007775.1 1256666 1257100 D identified by match to protein family HMM PF00903; match to protein family HMM TIGR00068; lactoylglutathione lyase 1256666..1257100 Synechococcus sp. JA-3-3Ab 3899375 YP_474691.1 CDS CYA_1245 NC_007775.1 1257125 1258216 R identified by match to protein family HMM TIGR01352; TonB family protein complement(1257125..1258216) Synechococcus sp. JA-3-3Ab 3899376 YP_474692.1 CDS CYA_1246 NC_007775.1 1258476 1258955 D identified by match to protein family HMM PF00903; glyoxalase family protein 1258476..1258955 Synechococcus sp. JA-3-3Ab 3899377 YP_474693.1 CDS CYA_1247 NC_007775.1 1258973 1259830 D identified by match to protein family HMM PF06485; hypothetical protein 1258973..1259830 Synechococcus sp. JA-3-3Ab 3899378 YP_474694.1 CDS menC NC_007775.1 1260709 1261710 D catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 1260709..1261710 Synechococcus sp. JA-3-3Ab 3899379 YP_474696.1 CDS CYA_1251 NC_007775.1 1263140 1263502 D hypothetical protein 1263140..1263502 Synechococcus sp. JA-3-3Ab 3899381 YP_474697.1 CDS CYA_1250 NC_007775.1 1263499 1264620 R identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein complement(1263499..1264620) Synechococcus sp. JA-3-3Ab 3899382 YP_474698.1 CDS CYA_1252 NC_007775.1 1264886 1266106 R identified by match to protein family HMM PF01590; match to protein family HMM PF01966; GAF domain-containing protein complement(1264886..1266106) Synechococcus sp. JA-3-3Ab 3899383 YP_474699.1 CDS pth NC_007775.1 1266259 1266936 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1266259..1266936 Synechococcus sp. JA-3-3Ab 3899384 YP_474700.1 CDS CYA_1254 NC_007775.1 1266981 1268219 R identified by match to protein family HMM PF01594; hypothetical protein complement(1266981..1268219) Synechococcus sp. JA-3-3Ab 3899385 YP_474701.1 CDS CYA_1255 NC_007775.1 1268403 1269422 R hypothetical protein complement(1268403..1269422) Synechococcus sp. JA-3-3Ab 3899386 YP_474702.1 CDS leuS NC_007775.1 1270024 1272645 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1270024..1272645) Synechococcus sp. JA-3-3Ab 3899407 YP_474703.1 CDS petH NC_007775.1 1272774 1273664 R identified by similarity to SP:P00454; match to protein family HMM PF00175; ferredoxin--NADP reductase complement(1272774..1273664) Synechococcus sp. JA-3-3Ab 3899408 YP_474704.1 CDS prk NC_007775.1 1273982 1274989 D Catalyzes a reaction in which the CO2 acceptor molecule, RuBP, is generated via the phosphorylation of ribulose 5-phosphate with ATP; phosphoribulokinase 1273982..1274989 Synechococcus sp. JA-3-3Ab 3899409 YP_474705.1 CDS pgl NC_007775.1 1275064 1275795 D identified by match to protein family HMM PF01182; match to protein family HMM TIGR01198; 6-phosphogluconolactonase 1275064..1275795 Synechococcus sp. JA-3-3Ab 3899410 YP_474706.1 CDS CYA_1260 NC_007775.1 1275911 1276081 D identified by similarity to GB:BAC09330.1; hypothetical protein 1275911..1276081 Synechococcus sp. JA-3-3Ab 3899411 YP_474707.1 CDS CYA_1262 NC_007775.1 1277778 1278923 D identified by similarity to GB:BAD71308.1; hypothetical protein 1277778..1278923 Synechococcus sp. JA-3-3Ab 3899413 YP_474708.1 CDS CYA_1263 NC_007775.1 1279028 1279534 D hypothetical protein 1279028..1279534 Synechococcus sp. JA-3-3Ab 3899414 YP_474709.1 CDS minC NC_007775.1 1279684 1280436 D blocks the formation of polar Z-ring septums; septum formation inhibitor 1279684..1280436 Synechococcus sp. JA-3-3Ab 3899415 YP_474710.1 CDS minD NC_007775.1 1280433 1281239 D identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968; septum site-determining protein MinD 1280433..1281239 Synechococcus sp. JA-3-3Ab 3899416 YP_474711.1 CDS minE NC_007775.1 1281330 1281692 D identified by match to protein family HMM PF03776; match to protein family HMM TIGR01215; cell division topological specificity factor MinE 1281330..1281692 Synechococcus sp. JA-3-3Ab 3899417 YP_474712.1 CDS CYA_1268 NC_007775.1 1281926 1284115 D identified by match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein 1281926..1284115 Synechococcus sp. JA-3-3Ab 3899418 YP_474713.1 CDS CYA_1267 NC_007775.1 1284112 1284456 R identified by similarity to SP:P39323; match to protein family HMM PF03674; hypothetical protein complement(1284112..1284456) Synechococcus sp. JA-3-3Ab 3899419 YP_474714.1 CDS CYA_1269 NC_007775.1 1284501 1285112 R identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; membrane protein complement(1284501..1285112) Synechococcus sp. JA-3-3Ab 3899420 YP_474715.1 CDS holB NC_007775.1 1285137 1286150 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' complement(1285137..1286150) Synechococcus sp. JA-3-3Ab 3899421 YP_474716.1 CDS accB NC_007775.1 1286275 1286754 R identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(1286275..1286754) Synechococcus sp. JA-3-3Ab 3899422 YP_474717.1 CDS efp NC_007775.1 1286822 1287379 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1286822..1287379) Synechococcus sp. JA-3-3Ab 3899423 YP_474718.1 CDS CYA_1273 NC_007775.1 1287416 1288099 R identified by match to protein family HMM PF00814; glycoprotease family protein complement(1287416..1288099) Synechococcus sp. JA-3-3Ab 3899424 YP_474719.1 CDS psbA-1 NC_007775.1 1288198 1289262 D identified by match to protein family HMM PF00124; match to protein family HMM TIGR01151; photosystem II protein D1 1288198..1289262 Synechococcus sp. JA-3-3Ab 3899425 YP_474720.1 CDS CYA_1275 NC_007775.1 1289332 1289757 R hypothetical protein complement(1289332..1289757) Synechococcus sp. JA-3-3Ab 3899426 YP_474721.1 CDS CYA_1276 NC_007775.1 1289747 1289896 D hypothetical protein 1289747..1289896 Synechococcus sp. JA-3-3Ab 3899427 YP_474724.1 CDS CYA_1279 NC_007775.1 1290363 1291310 R identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfAB complement(1290363..1291310) Synechococcus sp. JA-3-3Ab 3899430 YP_474725.1 CDS CYA_1281 NC_007775.1 1291390 1291635 D identified by similarity to GB:AAS69771.1; hypothetical protein 1291390..1291635 Synechococcus sp. JA-3-3Ab 3899431 YP_474726.1 CDS CYA_1280 NC_007775.1 1291474 1291935 R TatC family protein, truncation complement(1291474..1291935) Synechococcus sp. JA-3-3Ab 3899432 YP_474727.1 CDS CYA_1282 NC_007775.1 1292098 1293303 R identified by similarity to SP:Q52814; match to protein family HMM PF00528; match to protein family HMM TIGR01726; polar amino acid ABC transporter permease complement(1292098..1293303) Synechococcus sp. JA-3-3Ab 3899433 YP_474728.1 CDS CYA_1283 NC_007775.1 1293307 1294479 R identified by similarity to SP:Q52813; match to protein family HMM PF00528; match to protein family HMM TIGR01726; polar amino acid ABC transporter permease complement(1293307..1294479) Synechococcus sp. JA-3-3Ab 3899434 YP_474729.1 CDS CYA_1284 NC_007775.1 1294588 1295625 R identified by similarity to SP:Q52812; match to protein family HMM PF00497; polar amino acid ABC transporter amino acid-binding protein complement(1294588..1295625) Synechococcus sp. JA-3-3Ab 3899435 YP_474730.1 CDS CYA_1285 NC_007775.1 1295889 1296677 D identified by similarity to SP:Q52815; match to protein family HMM PF00005; polar amino acid ABC transporter ATP-binding protein 1295889..1296677 Synechococcus sp. JA-3-3Ab 3899436 YP_474731.1 CDS CYA_1286 NC_007775.1 1296686 1297534 R identified by similarity to GB:AAV47563.1; hypothetical protein complement(1296686..1297534) Synechococcus sp. JA-3-3Ab 3899437 YP_474732.1 CDS CYA_1287 NC_007775.1 1297563 1297778 D hypothetical protein 1297563..1297778 Synechococcus sp. JA-3-3Ab 3899438 YP_474733.1 CDS trpA NC_007775.1 1299385 1300230 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1299385..1300230 Synechococcus sp. JA-3-3Ab 3899440 YP_474734.1 CDS CYA_1289 NC_007775.1 1300215 1300781 R identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfB complement(1300215..1300781) Synechococcus sp. JA-3-3Ab 3899441 YP_474735.1 CDS CYA_1291 NC_007775.1 1300763 1301161 R identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfA complement(1300763..1301161) Synechococcus sp. JA-3-3Ab 3899442 YP_474736.1 CDS CYA_1292 NC_007775.1 1301241 1301537 D hypothetical protein 1301241..1301537 Synechococcus sp. JA-3-3Ab 3899443 YP_474737.1 CDS CYA_1293 NC_007775.1 1301518 1304331 D identified by match to protein family HMM PF04851; type III restriction-modification system, res subunit 1301518..1304331 Synechococcus sp. JA-3-3Ab 3899444 YP_474738.1 CDS CYA_1294 NC_007775.1 1304681 1305313 D identified by similarity to SP:P39329; anaerobic ribonucleotide reductase activating protein 1304681..1305313 Synechococcus sp. JA-3-3Ab 3899445 YP_474739.1 CDS CYA_1295 NC_007775.1 1305333 1305617 R hypothetical protein complement(1305333..1305617) Synechococcus sp. JA-3-3Ab 3899465 YP_474740.1 CDS CYA_1296 NC_007775.1 1305857 1306660 D identified by match to protein family HMM PF01145; stomatin/podocin/band 7/nephrosis.2/SPFH (stomatin) family protein 1305857..1306660 Synechococcus sp. JA-3-3Ab 3899466 YP_474741.1 CDS CYA_1297 NC_007775.1 1306701 1307639 D identified by match to protein family HMM PF01145; HflC/HflK family protein 1306701..1307639 Synechococcus sp. JA-3-3Ab 3899467 YP_474742.1 CDS CYA_1298 NC_007775.1 1307640 1308344 R ComF family protein complement(1307640..1308344) Synechococcus sp. JA-3-3Ab 3899468 YP_474743.1 CDS rpsL NC_007775.1 1308542 1308949 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 1308542..1308949 Synechococcus sp. JA-3-3Ab 3899469 YP_474744.1 CDS rpsG NC_007775.1 1308993 1309463 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1308993..1309463 Synechococcus sp. JA-3-3Ab 3899470 YP_474745.1 CDS fusA NC_007775.1 1309620 1311752 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1309620..1311752 Synechococcus sp. JA-3-3Ab 3899471 YP_474746.1 CDS tuf NC_007775.1 1311775 1313004 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1311775..1313004 Synechococcus sp. JA-3-3Ab 3899472 YP_474747.1 CDS rpsJ NC_007775.1 1313098 1313415 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 1313098..1313415 Synechococcus sp. JA-3-3Ab 3899473 YP_474748.1 CDS dapB NC_007775.1 1313462 1314343 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1313462..1314343 Synechococcus sp. JA-3-3Ab 3899474 YP_474749.1 CDS CYA_1304 NC_007775.1 1314340 1315251 R identified by match to protein family HMM PF02219; methylenetetrahydrofolate reductase family protein complement(1314340..1315251) Synechococcus sp. JA-3-3Ab 3899475 YP_474750.1 CDS CYA_1306 NC_007775.1 1315337 1316857 R hypothetical protein complement(1315337..1316857) Synechococcus sp. JA-3-3Ab 3899476 YP_474751.1 CDS CYA_1307 NC_007775.1 1317026 1317757 R hypothetical protein complement(1317026..1317757) Synechococcus sp. JA-3-3Ab 3899477 YP_474752.1 CDS CYA_1308 NC_007775.1 1318030 1319391 R identified by match to protein family HMM PF01266; oxidoreductase, FAD-dependent complement(1318030..1319391) Synechococcus sp. JA-3-3Ab 3899478 YP_474753.1 CDS CYA_1309 NC_007775.1 1319466 1319630 R hypothetical protein complement(1319466..1319630) Synechococcus sp. JA-3-3Ab 3899479 YP_474754.1 CDS tatC NC_007775.1 1319891 1320673 R identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; Sec-independent protein translocase TatC complement(1319891..1320673) Synechococcus sp. JA-3-3Ab 3899480 YP_474755.1 CDS CYA_1311 NC_007775.1 1321050 1321982 D identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfAB 1321050..1321982 Synechococcus sp. JA-3-3Ab 3899481 YP_474756.1 CDS CYA_1312 NC_007775.1 1322087 1322407 R identified by match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein complement(1322087..1322407) Synechococcus sp. JA-3-3Ab 3899482 YP_529502.1 CDS CYA_1313 NC_007775.1 1322404 1322736 R DNA methyltransferase complement(1322404..1322736) Synechococcus sp. JA-3-3Ab 3899483 YP_474757.1 CDS CYA_1316 NC_007775.1 1326864 1329119 R identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; DNA internalization competence protein complement(1326864..1329119) Synechococcus sp. JA-3-3Ab 3899484 YP_474758.1 CDS CYA_1317 NC_007775.1 1329550 1329765 D hypothetical protein 1329550..1329765 Synechococcus sp. JA-3-3Ab 3899485 YP_474759.1 CDS gspO NC_007775.1 1329842 1330684 D identified by similarity to SP:P45794; match to protein family HMM PF01478; match to protein family HMM PF06750; prepilin peptidase 1329842..1330684 Synechococcus sp. JA-3-3Ab 3899486 YP_474760.1 CDS chlH NC_007775.1 1330745 1334707 R catalyzes the formation of Mg-protoporphyrin IX from protoporphyrin IX and Mg(2+); first committed step of chlorophyll biosynthesis; magnesium chelatase subunit H complement(1330745..1334707) Synechococcus sp. JA-3-3Ab 3899487 YP_474761.1 CDS pcrA NC_007775.1 1336315 1338645 R identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073; ATP-dependent DNA helicase PcrA complement(1336315..1338645) Synechococcus sp. JA-3-3Ab 3899489 YP_474762.1 CDS CYA_1322 NC_007775.1 1338793 1339422 D hypothetical protein 1338793..1339422 Synechococcus sp. JA-3-3Ab 3899490 YP_474763.1 CDS CYA_1323 NC_007775.1 1339537 1340181 D hypothetical protein 1339537..1340181 Synechococcus sp. JA-3-3Ab 3899491 YP_474764.1 CDS dapF NC_007775.1 1340188 1341045 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(1340188..1341045) Synechococcus sp. JA-3-3Ab 3899492 YP_474765.1 CDS psbN NC_007775.1 1341084 1341215 R identified by match to protein family HMM PF02468; photosystem II reaction center protein N complement(1341084..1341215) Synechococcus sp. JA-3-3Ab 3899493 YP_474766.1 CDS psbH NC_007775.1 1341406 1341609 D may be involved in regulating PSII assembly and/or stability; photosystem II reaction center protein H 1341406..1341609 Synechococcus sp. JA-3-3Ab 3899494 YP_474767.1 CDS argJ NC_007775.1 1341633 1342853 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase complement(1341633..1342853) Synechococcus sp. JA-3-3Ab 3899495 YP_474768.1 CDS CYA_1328 NC_007775.1 1343098 1343904 D Homologous to ATP-binding members of TCDB 3.A.1.16. The Nitrate/Nitrite/Cyanate Uptake Transporter (NitT) Family (Similar to 3.A.1.12 and 3.A.1.17) and 3.A.1.17. The Taurine Uptake Transporter (TauT) Family (Similar to 3.A.1.12 and 3.A.1.16); identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1343098..1343904 Synechococcus sp. JA-3-3Ab 3899496 YP_474769.1 CDS CYA_1329 NC_007775.1 1344208 1345005 D Homologous to permease members of TCDB 3.A.1.17 The Taurine Uptake Transporter (TauT) Family (Similar to 3.A.1.12 and 3.A.1.16) and 3.A.1.16. The Nitrate/Nitrite/Cyanate Uptake Transporter (NitT) Family; identified by match to protein family HMM PF00528; ABC transporter permease 1344208..1345005 Synechococcus sp. JA-3-3Ab 3899497 YP_474770.1 CDS CYA_1331 NC_007775.1 1345253 1345906 R identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator complement(1345253..1345906) Synechococcus sp. JA-3-3Ab 3899499 YP_474771.1 CDS CYA_1332 NC_007775.1 1346103 1347674 R identified by similarity to PIR:AC2404; hypothetical protein complement(1346103..1347674) Synechococcus sp. JA-3-3Ab 3899500 YP_474772.1 CDS CYA_1333 NC_007775.1 1347730 1348299 R hypothetical protein complement(1347730..1348299) Synechococcus sp. JA-3-3Ab 3899501 YP_474773.1 CDS CYA_1334 NC_007775.1 1348335 1349336 R identified by match to protein family HMM PF00107; zinc-binding dehydrogenase family oxidoreductase complement(1348335..1349336) Synechococcus sp. JA-3-3Ab 3899502 YP_474774.1 CDS CYA_1335 NC_007775.1 1349497 1349640 D hypothetical protein 1349497..1349640 Synechococcus sp. JA-3-3Ab 3899541 YP_474775.1 CDS CYA_1336 NC_007775.1 1349640 1350317 D hypothetical protein 1349640..1350317 Synechococcus sp. JA-3-3Ab 3899542 YP_474776.1 CDS apcB-1 NC_007775.1 1350319 1350822 R identified by match to protein family HMM PF00502; match to protein family HMM TIGR01337; allophycocyanin subunit beta complement(1350319..1350822) Synechococcus sp. JA-3-3Ab 3899543 YP_474777.1 CDS truB NC_007775.1 1351048 1351947 R identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431; tRNA pseudouridine synthase B complement(1351048..1351947) Synechococcus sp. JA-3-3Ab 3899544 YP_474778.1 CDS CYA_1339 NC_007775.1 1352022 1353053 D identified by match to protein family HMM PF00892; hypothetical protein 1352022..1353053 Synechococcus sp. JA-3-3Ab 3899545 YP_474779.1 CDS trpS NC_007775.1 1353066 1354061 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(1353066..1354061) Synechococcus sp. JA-3-3Ab 3899546 YP_474780.1 CDS CYA_1341 NC_007775.1 1354154 1354489 D hypothetical protein 1354154..1354489 Synechococcus sp. JA-3-3Ab 3899547 YP_474781.1 CDS ycf3 NC_007775.1 1354567 1355088 D identified by similarity to SP:Q8DIQ6; match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720; photosystem I assembly protein Ycf3 1354567..1355088 Synechococcus sp. JA-3-3Ab 3899548 YP_474782.1 CDS gatC NC_007775.1 1355156 1355449 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 1355156..1355449 Synechococcus sp. JA-3-3Ab 3899549 YP_474783.1 CDS tynA NC_007775.1 1356160 1358178 R catalyzes the formation of phenylacetaldehyde from 2-phenylethylamine; tyramine oxidase complement(1356160..1358178) Synechococcus sp. JA-3-3Ab 3899552 YP_474784.1 CDS CYA_1347 NC_007775.1 1358712 1358843 R hypothetical protein complement(1358712..1358843) Synechococcus sp. JA-3-3Ab 3899553 YP_474785.1 CDS CYA_1349 NC_007775.1 1359018 1361663 D identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 1359018..1361663 Synechococcus sp. JA-3-3Ab 3899554 YP_474786.1 CDS CYA_1350 NC_007775.1 1361894 1362340 D hypothetical protein 1361894..1362340 Synechococcus sp. JA-3-3Ab 3899556 YP_474787.1 CDS CYA_1351 NC_007775.1 1362669 1362881 R hypothetical protein complement(1362669..1362881) Synechococcus sp. JA-3-3Ab 3899557 YP_474788.1 CDS folC NC_007775.1 1363311 1364600 R identified by similarity to SP:Q05865; match to protein family HMM TIGR01499; folylpolyglutamate synthase complement(1363311..1364600) Synechococcus sp. JA-3-3Ab 3899654 YP_474789.1 CDS serA NC_007775.1 1364668 1366251 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(1364668..1366251) Synechococcus sp. JA-3-3Ab 3899655 YP_474790.1 CDS CYA_1355 NC_007775.1 1366455 1366745 R identified by similarity to PIR:S77467; hypothetical protein complement(1366455..1366745) Synechococcus sp. JA-3-3Ab 3899656 YP_474791.1 CDS CYA_1356 NC_007775.1 1367432 1367542 R hypothetical protein complement(1367432..1367542) Synechococcus sp. JA-3-3Ab 3899657 YP_474792.1 CDS CYA_1358 NC_007775.1 1367795 1368193 D identified by similarity to PIR:AD2038; ISSoc4, transposase orfA 1367795..1368193 Synechococcus sp. JA-3-3Ab 3899659 YP_474793.1 CDS CYA_1360 NC_007775.1 1368175 1368741 D identified by similarity to PIR:AI1851; ISSoc4, transposase orfB 1368175..1368741 Synechococcus sp. JA-3-3Ab 3899660 YP_474794.1 CDS CYA_1359 NC_007775.1 1368726 1369295 R ISSoc5, transposase, truncation complement(1368726..1369295) Synechococcus sp. JA-3-3Ab 3899661 YP_474795.1 CDS purL NC_007775.1 1369435 1371735 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 1369435..1371735 Synechococcus sp. JA-3-3Ab 3899662 YP_474796.1 CDS trxB NC_007775.1 1371802 1373232 R identified by match to protein family HMM PF00070; match to protein family HMM PF00085; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase complement(1371802..1373232) Synechococcus sp. JA-3-3Ab 3899663 YP_474797.1 CDS glnA NC_007775.1 1373605 1375029 D identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 1373605..1375029 Synechococcus sp. JA-3-3Ab 3899664 YP_474798.1 CDS CYA_1364 NC_007775.1 1375295 1375942 D hypothetical protein 1375295..1375942 Synechococcus sp. JA-3-3Ab 3899665 YP_474799.1 CDS CYA_1365 NC_007775.1 1376021 1376737 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 1376021..1376737 Synechococcus sp. JA-3-3Ab 3899666 YP_474800.1 CDS napA NC_007775.1 1376917 1378974 D identified by match to protein family HMM PF00582; match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein 1376917..1378974 Synechococcus sp. JA-3-3Ab 3899667 YP_474801.1 CDS CYA_1367 NC_007775.1 1379067 1379558 R hypothetical protein complement(1379067..1379558) Synechococcus sp. JA-3-3Ab 3899668 YP_474802.1 CDS recR NC_007775.1 1379706 1380305 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(1379706..1380305) Synechococcus sp. JA-3-3Ab 3899669 YP_474803.1 CDS CYA_1369 NC_007775.1 1380327 1380662 R identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein complement(1380327..1380662) Synechococcus sp. JA-3-3Ab 3899670 YP_474804.1 CDS CYA_1370 NC_007775.1 1380830 1381726 D identified by similarity to SP:P10906; match to protein family HMM PF00528; sn-glycerol-3-phosphate ABC transporter, permease protein 1380830..1381726 Synechococcus sp. JA-3-3Ab 3899690 YP_474805.1 CDS ubiD NC_007775.1 1381763 1383271 D identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1381763..1383271 Synechococcus sp. JA-3-3Ab 3899691 YP_474806.1 CDS CYA_1372 NC_007775.1 1383293 1384507 D arsenite-antimonite (ArsAB) efflux family protein 1383293..1384507 Synechococcus sp. JA-3-3Ab 3899692 YP_474807.1 CDS CYA_1373 NC_007775.1 1384524 1384889 R hypothetical protein complement(1384524..1384889) Synechococcus sp. JA-3-3Ab 3899693 YP_474808.1 CDS CYA_1374 NC_007775.1 1384977 1385594 D identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 1384977..1385594 Synechococcus sp. JA-3-3Ab 3899694 YP_474809.1 CDS CYA_1375 NC_007775.1 1385449 1386729 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 1385449..1386729 Synechococcus sp. JA-3-3Ab 3899695 YP_474810.1 CDS CYA_1376 NC_007775.1 1386920 1387207 D hypothetical protein 1386920..1387207 Synechococcus sp. JA-3-3Ab 3899696 YP_474811.1 CDS CYA_1377 NC_007775.1 1387257 1387394 R hypothetical protein complement(1387257..1387394) Synechococcus sp. JA-3-3Ab 3899697 YP_474812.1 CDS CYA_1378 NC_007775.1 1387369 1387680 D hypothetical protein 1387369..1387680 Synechococcus sp. JA-3-3Ab 3899698 YP_474813.1 CDS CYA_1381 NC_007775.1 1388536 1389240 D identified by match to protein family HMM PF00226; DnaJ domain-containing protein 1388536..1389240 Synechococcus sp. JA-3-3Ab 3899700 YP_474814.1 CDS CYA_1380 NC_007775.1 1389237 1389761 R identified by similarity to GB:BAC09114.1; hypothetical protein complement(1389237..1389761) Synechococcus sp. JA-3-3Ab 3899701 YP_474815.1 CDS CYA_1382 NC_007775.1 1389990 1390490 R hypothetical protein complement(1389990..1390490) Synechococcus sp. JA-3-3Ab 3899702 YP_474816.1 CDS CYA_1383 NC_007775.1 1390490 1390939 R identified by match to protein family HMM PF01475; FUR family transcriptional regulator complement(1390490..1390939) Synechococcus sp. JA-3-3Ab 3899703 YP_474817.1 CDS CYA_1384 NC_007775.1 1390974 1391297 R identified by similarity to GB:BAC09596.1; hypothetical protein complement(1390974..1391297) Synechococcus sp. JA-3-3Ab 3899704 YP_474818.1 CDS CYA_1386 NC_007775.1 1391449 1392576 D identified by match to protein family HMM PF02277; match to protein family HMM TIGR00303; hypothetical protein 1391449..1392576 Synechococcus sp. JA-3-3Ab 3899705 YP_474819.1 CDS clpS NC_007775.1 1392525 1392830 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor complement(1392525..1392830) Synechococcus sp. JA-3-3Ab 3899706 YP_474820.1 CDS CYA_1387 NC_007775.1 1393034 1394890 R hypothetical protein complement(1393034..1394890) Synechococcus sp. JA-3-3Ab 3899707 YP_474821.1 CDS CYA_1388 NC_007775.1 1394953 1395348 R hypothetical protein complement(1394953..1395348) Synechococcus sp. JA-3-3Ab 3899708 YP_474822.1 CDS CYA_1389 NC_007775.1 1395439 1396113 D identified by match to protein family HMM PF01872; riboflavin biosynthesis protein RibD domain-containing protein 1395439..1396113 Synechococcus sp. JA-3-3Ab 3899709 YP_474823.1 CDS CYA_1390 NC_007775.1 1396327 1396509 R hypothetical protein complement(1396327..1396509) Synechococcus sp. JA-3-3Ab 3899826 YP_474824.1 CDS CYA_1391 NC_007775.1 1396721 1396921 D identified by similarity to GB:BAC07925.1; hypothetical protein 1396721..1396921 Synechococcus sp. JA-3-3Ab 3899827 YP_474825.1 CDS CYA_1393 NC_007775.1 1397091 1398893 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; hypothetical protein 1397091..1398893 Synechococcus sp. JA-3-3Ab 3899828 YP_474826.1 CDS CYA_1392 NC_007775.1 1398863 1399594 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(1398863..1399594) Synechococcus sp. JA-3-3Ab 3899829 YP_474827.1 CDS recO NC_007775.1 1400048 1400953 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(1400048..1400953) Synechococcus sp. JA-3-3Ab 3899830 YP_474828.1 CDS deoC NC_007775.1 1400950 1401651 R catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase complement(1400950..1401651) Synechococcus sp. JA-3-3Ab 3899831 YP_474829.1 CDS CYA_1396 NC_007775.1 1401835 1402206 D identified by similarity to GB:BAC08489.1; hypothetical protein 1401835..1402206 Synechococcus sp. JA-3-3Ab 3899832 YP_474830.1 CDS CYA_1397 NC_007775.1 1402203 1402730 D hypothetical protein 1402203..1402730 Synechococcus sp. JA-3-3Ab 3899833 YP_474831.1 CDS metG NC_007775.1 1402734 1404284 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(1402734..1404284) Synechococcus sp. JA-3-3Ab 3899834 YP_474832.1 CDS CYA_1399 NC_007775.1 1404262 1406232 D hypothetical protein 1404262..1406232 Synechococcus sp. JA-3-3Ab 3899835 YP_474833.1 CDS CYA_1400 NC_007775.1 1406262 1406588 D hypothetical protein 1406262..1406588 Synechococcus sp. JA-3-3Ab 3899836 YP_474834.1 CDS CYA_1401 NC_007775.1 1406653 1407894 D identified by match to protein family HMM PF05673; hypothetical protein 1406653..1407894 Synechococcus sp. JA-3-3Ab 3899837 YP_474835.1 CDS CYA_1402 NC_007775.1 1407996 1408382 R hypothetical protein complement(1407996..1408382) Synechococcus sp. JA-3-3Ab 3899838 YP_474836.1 CDS petC NC_007775.1 1408487 1409005 D Rieske protein, with cytochrome b6, cytochrome f, and subunit IV, makes up the large subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I; cytochrome b6-f complex iron-sulfur subunit 1408487..1409005 Synechococcus sp. JA-3-3Ab 3899839 YP_474837.1 CDS petA NC_007775.1 1409483 1410466 D cytochrome f, with cytochrome b6, subunit IV, and the Rieske protein, makes up the large subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I; apocytochrome f 1409483..1410466 Synechococcus sp. JA-3-3Ab 3899840 YP_474838.1 CDS CYA_1405 NC_007775.1 1410528 1411340 R identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; PhzF family phenazine biosynthesis protein complement(1410528..1411340) Synechococcus sp. JA-3-3Ab 3899841 YP_474839.1 CDS groES NC_007775.1 1411585 1411896 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 1411585..1411896 Synechococcus sp. JA-3-3Ab 3899842 YP_474840.1 CDS groEL NC_007775.1 1411963 1413597 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 1411963..1413597 Synechococcus sp. JA-3-3Ab 3899843 YP_474841.1 CDS CYA_1408 NC_007775.1 1413771 1414598 D identified by similarity to PIR:C70708; hypothetical protein 1413771..1414598 Synechococcus sp. JA-3-3Ab 3899844 YP_474842.1 CDS CYA_1409 NC_007775.1 1414754 1415917 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase 1414754..1415917 Synechococcus sp. JA-3-3Ab 3898915 YP_474843.1 CDS CYA_1411 NC_007775.1 1416275 1417909 D identified by match to protein family HMM PF00395; S-layer protein 1416275..1417909 Synechococcus sp. JA-3-3Ab 3898917 YP_474844.1 CDS CYA_1412 NC_007775.1 1418354 1419934 D identified by match to protein family HMM PF00395; S-layer protein 1418354..1419934 Synechococcus sp. JA-3-3Ab 3898918 YP_474845.1 CDS CYA_1413 NC_007775.1 1420078 1420917 R hypothetical protein complement(1420078..1420917) Synechococcus sp. JA-3-3Ab 3898919 YP_474846.1 CDS CYA_1414 NC_007775.1 1420985 1422682 R identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; SulP family sulfate permease complement(1420985..1422682) Synechococcus sp. JA-3-3Ab 3898920 YP_474847.1 CDS gyrA NC_007775.1 1422999 1425539 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1422999..1425539 Synechococcus sp. JA-3-3Ab 3898921 YP_474848.1 CDS CYA_1416 NC_007775.1 1425730 1426125 D identified by similarity to GB:CAE19064.1; hypothetical protein 1425730..1426125 Synechococcus sp. JA-3-3Ab 3898922 YP_474849.1 CDS CYA_1417 NC_007775.1 1426263 1427396 D identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 1426263..1427396 Synechococcus sp. JA-3-3Ab 3898923 YP_474850.1 CDS psbW NC_007775.1 1427568 1427882 D PsbW; part of the phosystem II reaction center; photosystem II reaction center protein Psb28 1427568..1427882 Synechococcus sp. JA-3-3Ab 3898924 YP_474851.1 CDS gatA NC_007775.1 1427888 1429417 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(1427888..1429417) Synechococcus sp. JA-3-3Ab 3898925 YP_474852.1 CDS CYA_1420 NC_007775.1 1429598 1429915 R hypothetical protein complement(1429598..1429915) Synechococcus sp. JA-3-3Ab 3898926 YP_474853.1 CDS CYA_1421 NC_007775.1 1430023 1430361 R hypothetical protein complement(1430023..1430361) Synechococcus sp. JA-3-3Ab 3898927 YP_474854.1 CDS CYA_1423 NC_007775.1 1430501 1431175 R identified by similarity to PIR:AD2438; match to protein family HMM PF05685; hypothetical protein complement(1430501..1431175) Synechococcus sp. JA-3-3Ab 3898929 YP_474855.1 CDS CYA_1424 NC_007775.1 1431242 1431622 R hypothetical protein complement(1431242..1431622) Synechococcus sp. JA-3-3Ab 3898930 YP_474856.1 CDS CYA_1425 NC_007775.1 1431698 1431787 R hypothetical protein complement(1431698..1431787) Synechococcus sp. JA-3-3Ab 3898931 YP_474857.1 CDS CYA_1426 NC_007775.1 1431851 1432150 R identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008; ferredoxin, 2Fe-2S complement(1431851..1432150) Synechococcus sp. JA-3-3Ab 3898932 YP_474858.1 CDS CYA_1427 NC_007775.1 1432352 1432498 D hypothetical protein 1432352..1432498 Synechococcus sp. JA-3-3Ab 3898970 YP_474859.1 CDS CYA_1428 NC_007775.1 1432665 1434956 D lipoprotein 1432665..1434956 Synechococcus sp. JA-3-3Ab 3898971 YP_474860.1 CDS CYA_1430 NC_007775.1 1435208 1437325 D lipoprotein 1435208..1437325 Synechococcus sp. JA-3-3Ab 3898972 YP_474861.1 CDS CYA_1429 NC_007775.1 1437306 1437467 R hypothetical protein complement(1437306..1437467) Synechococcus sp. JA-3-3Ab 3898973 YP_474862.1 CDS CYA_1431 NC_007775.1 1437521 1438027 D identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 1437521..1438027 Synechococcus sp. JA-3-3Ab 3898974 YP_474863.1 CDS CYA_1432 NC_007775.1 1438097 1438597 D hypothetical protein 1438097..1438597 Synechococcus sp. JA-3-3Ab 3898975 YP_474864.1 CDS CYA_1433 NC_007775.1 1438736 1439401 D lipoprotein 1438736..1439401 Synechococcus sp. JA-3-3Ab 3898976 YP_474865.1 CDS CYA_1434 NC_007775.1 1439403 1439495 D hypothetical protein 1439403..1439495 Synechococcus sp. JA-3-3Ab 3898977 YP_474866.1 CDS CYA_1435 NC_007775.1 1439922 1441664 D lipoprotein 1439922..1441664 Synechococcus sp. JA-3-3Ab 3898978 YP_474867.1 CDS CYA_1436 NC_007775.1 1441806 1443266 R M8 family peptidase complement(1441806..1443266) Synechococcus sp. JA-3-3Ab 3898979 YP_474868.1 CDS CYA_1437 NC_007775.1 1443425 1444693 D hypothetical protein 1443425..1444693 Synechococcus sp. JA-3-3Ab 3898980 YP_474869.1 CDS CYA_1438 NC_007775.1 1445169 1446401 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase complement(1445169..1446401) Synechococcus sp. JA-3-3Ab 3898981 YP_474870.1 CDS CYA_1439 NC_007775.1 1446256 1446849 R identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase complement(1446256..1446849) Synechococcus sp. JA-3-3Ab 3898982 YP_474871.1 CDS CYA_1440 NC_007775.1 1446917 1447375 R ISSoc14, transposase, truncation complement(1446917..1447375) Synechococcus sp. JA-3-3Ab 3898983 YP_474872.1 CDS CYA_1441 NC_007775.1 1447464 1448585 R identified by match to protein family HMM PF00005; carbohydrate ABC transporter ATP-binding protein complement(1447464..1448585) Synechococcus sp. JA-3-3Ab 3898984 YP_474873.1 CDS CYA_1442 NC_007775.1 1448815 1449255 R identified by similarity to SP:Q06823; match to protein family HMM PF00011; small heat shock protein (HSP20) family protein complement(1448815..1449255) Synechococcus sp. JA-3-3Ab 3898985 YP_474874.1 CDS CYA_1443 NC_007775.1 1449434 1449745 R identified by similarity to PIR:AI1993; hypothetical protein complement(1449434..1449745) Synechococcus sp. JA-3-3Ab 3898986 YP_474875.1 CDS acnB NC_007775.1 1449821 1452454 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(1449821..1452454) Synechococcus sp. JA-3-3Ab 3898987 YP_474876.1 CDS prfA NC_007775.1 1452529 1453614 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(1452529..1453614) Synechococcus sp. JA-3-3Ab 3898988 YP_474877.1 CDS rpmE NC_007775.1 1453685 1453906 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(1453685..1453906) Synechococcus sp. JA-3-3Ab 3899125 YP_474878.1 CDS rpsI NC_007775.1 1453984 1454397 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(1453984..1454397) Synechococcus sp. JA-3-3Ab 3899126 YP_474879.1 CDS rplM NC_007775.1 1454394 1454849 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(1454394..1454849) Synechococcus sp. JA-3-3Ab 3899127 YP_474880.1 CDS truA NC_007775.1 1454899 1455762 R identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071; tRNA pseudouridine synthase A complement(1454899..1455762) Synechococcus sp. JA-3-3Ab 3899128 YP_474881.1 CDS rplQ NC_007775.1 1455768 1456118 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(1455768..1456118) Synechococcus sp. JA-3-3Ab 3899129 YP_474882.1 CDS rpoA NC_007775.1 1456191 1457186 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(1456191..1457186) Synechococcus sp. JA-3-3Ab 3899130 YP_474883.1 CDS rpsK NC_007775.1 1457309 1457695 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(1457309..1457695) Synechococcus sp. JA-3-3Ab 3899131 YP_474884.1 CDS rpsM NC_007775.1 1457784 1458167 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(1457784..1458167) Synechococcus sp. JA-3-3Ab 3899132 YP_474885.1 CDS rpmJ NC_007775.1 1458381 1458497 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(1458381..1458497) Synechococcus sp. JA-3-3Ab 3899133 YP_474886.1 CDS CYA_1455 NC_007775.1 1458692 1460623 D identified by similarity to GB:BAC90967.1; hypothetical protein 1458692..1460623 Synechococcus sp. JA-3-3Ab 3899134 YP_474887.1 CDS CYA_1456 NC_007775.1 1460682 1461719 D hypothetical protein 1460682..1461719 Synechococcus sp. JA-3-3Ab 3899135 YP_474888.1 CDS CYA_1457 NC_007775.1 1461999 1463558 D identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 1461999..1463558 Synechococcus sp. JA-3-3Ab 3899136 YP_474889.1 CDS CYA_1458 NC_007775.1 1463667 1464716 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase, NAD-binding 1463667..1464716 Synechococcus sp. JA-3-3Ab 3899137 YP_474890.1 CDS CYA_1459 NC_007775.1 1464769 1465722 D identified by match to protein family HMM PF01925; hypothetical protein 1464769..1465722 Synechococcus sp. JA-3-3Ab 3899138 YP_474891.1 CDS CYA_1460 NC_007775.1 1465840 1466739 R catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; prephenate dehydratase complement(1465840..1466739) Synechococcus sp. JA-3-3Ab 3899139 YP_474892.1 CDS CYA_1461 NC_007775.1 1466743 1467078 R identified by similarity to SP:P39146; competence protein complement(1466743..1467078) Synechococcus sp. JA-3-3Ab 3899140 YP_474893.1 CDS alr NC_007775.1 1467548 1468837 R identified by similarity to SP:P54918; match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase complement(1467548..1468837) Synechococcus sp. JA-3-3Ab 3899141 YP_474894.1 CDS sppA-2 NC_007775.1 1468878 1469918 R identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 36K type complement(1468878..1469918) Synechococcus sp. JA-3-3Ab 3899142 YP_474895.1 CDS CYA_1465 NC_007775.1 1470893 1472410 D hypothetical protein 1470893..1472410 Synechococcus sp. JA-3-3Ab 3899164 YP_474896.1 CDS priA NC_007775.1 1472452 1474845 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1472452..1474845 Synechococcus sp. JA-3-3Ab 3899165 YP_474897.1 CDS CYA_1467 NC_007775.1 1475005 1476111 D identified by match to protein family HMM PF00180; isopropylmalate/isohomocitrate dehydrogenase family protein 1475005..1476111 Synechococcus sp. JA-3-3Ab 3899166 YP_474898.1 CDS CYA_1468 NC_007775.1 1476143 1477069 R identified by match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase family protein complement(1476143..1477069) Synechococcus sp. JA-3-3Ab 3899167 YP_474899.1 CDS CYA_1469 NC_007775.1 1477084 1477329 D hypothetical protein 1477084..1477329 Synechococcus sp. JA-3-3Ab 3899168 YP_474900.1 CDS CYA_1470 NC_007775.1 1477378 1478613 D hypothetical protein 1477378..1478613 Synechococcus sp. JA-3-3Ab 3899169 YP_474901.1 CDS CYA_1471 NC_007775.1 1478619 1479899 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase complement(1478619..1479899) Synechococcus sp. JA-3-3Ab 3899170 YP_474902.1 CDS CYA_1472 NC_007775.1 1479754 1480371 R identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase complement(1479754..1480371) Synechococcus sp. JA-3-3Ab 3899171 YP_474903.1 CDS CYA_1473 NC_007775.1 1481805 1482455 D cob(I)alamin adenosyltransferase 1481805..1482455 Synechococcus sp. JA-3-3Ab 3899172 YP_474904.1 CDS dcd NC_007775.1 1482540 1483133 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1482540..1483133 Synechococcus sp. JA-3-3Ab 3899173 YP_474905.1 CDS queA NC_007775.1 1483225 1484415 D identified by match to protein family HMM PF02547; match to protein family HMM TIGR00113; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1483225..1484415 Synechococcus sp. JA-3-3Ab 3899174 YP_474906.1 CDS CYA_1475 NC_007775.1 1484412 1485188 R identified by match to protein family HMM PF00702; hydrolase, haloacid dehalogenase family protein complement(1484412..1485188) Synechococcus sp. JA-3-3Ab 3899175 YP_474907.1 CDS CYA_1477 NC_007775.1 1485217 1486212 R identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase complement(1485217..1486212) Synechococcus sp. JA-3-3Ab 3899176 YP_474908.1 CDS CYA_1478 NC_007775.1 1486245 1486910 D hypothetical protein 1486245..1486910 Synechococcus sp. JA-3-3Ab 3899177 YP_474909.1 CDS pyrG NC_007775.1 1486962 1488596 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1486962..1488596 Synechococcus sp. JA-3-3Ab 3899178 YP_474910.1 CDS CYA_1480 NC_007775.1 1488628 1488780 R hypothetical protein complement(1488628..1488780) Synechococcus sp. JA-3-3Ab 3899179 YP_474911.1 CDS CYA_1481 NC_007775.1 1488848 1489324 D hypothetical protein 1488848..1489324 Synechococcus sp. JA-3-3Ab 3899180 YP_474912.1 CDS CYA_1482 NC_007775.1 1489545 1490024 D identified by match to protein family HMM PF00160; cyclophilin-type peptidylprolyl cis-trans isomerase 1489545..1490024 Synechococcus sp. JA-3-3Ab 3899181 YP_474913.1 CDS gvpK NC_007775.1 1490111 1491406 D identified by match to protein family HMM PF00702; match to protein family HMM PF00741; HAD hydrolase-like protein/gas vesicle protein K 1490111..1491406 Synechococcus sp. JA-3-3Ab 3899182 YP_474914.1 CDS CYA_1484 NC_007775.1 1491527 1493104 D transfers electrons from NAD(P)H to quinons in the respiratory chain; NAD(P)H-quinone oxidoreductase subunit 2 1491527..1493104 Synechococcus sp. JA-3-3Ab 3899183 YP_474915.1 CDS ycf4 NC_007775.1 1493271 1493840 R required for the assembly of photosystem I complex; photosystem I assembly protein Ycf4 complement(1493271..1493840) Synechococcus sp. JA-3-3Ab 3899184 YP_474916.1 CDS CYA_1486 NC_007775.1 1494061 1495182 R identified by match to protein family HMM PF00395; S-layer protein complement(1494061..1495182) Synechococcus sp. JA-3-3Ab 3899185 YP_474917.1 CDS CYA_1487 NC_007775.1 1495170 1495484 R hypothetical protein complement(1495170..1495484) Synechococcus sp. JA-3-3Ab 3899186 YP_474918.1 CDS CYA_1488 NC_007775.1 1495536 1496153 R hypothetical protein complement(1495536..1496153) Synechococcus sp. JA-3-3Ab 3899187 YP_474919.1 CDS CYA_1489 NC_007775.1 1496190 1496693 R identified by similarity to GB:BAC89679.1; hypothetical protein complement(1496190..1496693) Synechococcus sp. JA-3-3Ab 3899188 YP_474920.1 CDS CYA_1490 NC_007775.1 1496753 1497415 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(1496753..1497415) Synechococcus sp. JA-3-3Ab 3899189 YP_474921.1 CDS CYA_1491 NC_007775.1 1497684 1498391 D identified by match to protein family HMM PF00027; cyclic nucleotide-binding protein 1497684..1498391 Synechococcus sp. JA-3-3Ab 3899190 YP_474922.1 CDS CYA_1492 NC_007775.1 1498421 1498915 D identified by similarity to GB:BAC90187.1; match to protein family HMM PF04248; hypothetical protein 1498421..1498915 Synechococcus sp. JA-3-3Ab 3899191 YP_474923.1 CDS CYA_1493 NC_007775.1 1499032 1501002 D identified by match to protein family HMM PF00226; match to protein family HMM PF07721; DnaJ domain-containing protein 1499032..1501002 Synechococcus sp. JA-3-3Ab 3899192 YP_474924.1 CDS CYA_1495 NC_007775.1 1501066 1502028 D identified by match to protein family HMM PF02361; transporter 1501066..1502028 Synechococcus sp. JA-3-3Ab 3899193 YP_474925.1 CDS CYA_1494 NC_007775.1 1501966 1504893 R identified by match to protein family HMM PF01590; match to protein family HMM PF02518; sensor histidine kinase complement(1501966..1504893) Synechococcus sp. JA-3-3Ab 3899194 YP_474926.1 CDS CYA_1496 NC_007775.1 1505050 1505595 R identified by match to protein family HMM PF03358; NADPH-dependent FMN reductase complement(1505050..1505595) Synechococcus sp. JA-3-3Ab 3899195 YP_474927.1 CDS CYA_1497 NC_007775.1 1505724 1508000 R identified by similarity to GB:CAE28953.1; hypothetical protein complement(1505724..1508000) Synechococcus sp. JA-3-3Ab 3899196 YP_474928.1 CDS CYA_1498 NC_007775.1 1508120 1508881 R hypothetical protein complement(1508120..1508881) Synechococcus sp. JA-3-3Ab 3899197 YP_474929.1 CDS CYA_1499 NC_007775.1 1508954 1509067 R hypothetical protein complement(1508954..1509067) Synechococcus sp. JA-3-3Ab 3899198 YP_474930.1 CDS fba NC_007775.1 1509142 1510221 D class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 1509142..1510221 Synechococcus sp. JA-3-3Ab 3899199 YP_474931.1 CDS CYA_1501 NC_007775.1 1510331 1510564 R hypothetical protein complement(1510331..1510564) Synechococcus sp. JA-3-3Ab 3899200 YP_474932.1 CDS CYA_1502 NC_007775.1 1510605 1510952 R hypothetical protein complement(1510605..1510952) Synechococcus sp. JA-3-3Ab 3899201 YP_474933.1 CDS CYA_1503 NC_007775.1 1511145 1511633 R identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994; NifU family SUF system FeS assembly protein complement(1511145..1511633) Synechococcus sp. JA-3-3Ab 3899202 YP_474934.1 CDS cobM NC_007775.1 1511999 1512763 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase complement(1511999..1512763) Synechococcus sp. JA-3-3Ab 3899203 YP_474935.1 CDS ispD NC_007775.1 1514374 1515081 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(1514374..1515081) Synechococcus sp. JA-3-3Ab 3899205 YP_474936.1 CDS amt NC_007775.1 1515231 1516637 R identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter complement(1515231..1516637) Synechococcus sp. JA-3-3Ab 3899206 YP_474937.1 CDS glnB NC_007775.1 1516789 1517127 R identified by similarity to SP:P80016; match to protein family HMM PF00543; nitrogen regulatory protein P-II complement(1516789..1517127) Synechococcus sp. JA-3-3Ab 3899207 YP_474938.1 CDS CYA_1509 NC_007775.1 1517279 1518694 R identified by match to protein family HMM PF04932; inorganic carbon transporter/0-antigen polymerase (ICT/OAP) family protein complement(1517279..1518694) Synechococcus sp. JA-3-3Ab 3899208 YP_474939.1 CDS CYA_1510 NC_007775.1 1518855 1519064 R hypothetical protein complement(1518855..1519064) Synechococcus sp. JA-3-3Ab 3899209 YP_474940.1 CDS holA NC_007775.1 1519335 1520312 D required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 1519335..1520312 Synechococcus sp. JA-3-3Ab 3899210 YP_474941.1 CDS ctaE NC_007775.1 1520399 1521010 R identified by similarity to SP:Q06475; cytochrome c oxidase subunit III complement(1520399..1521010) Synechococcus sp. JA-3-3Ab 3899211 YP_474942.1 CDS ctaD NC_007775.1 1521127 1522836 R identified by similarity to SP:Q06473; match to protein family HMM PF00115; cytochrome c oxidase subunit I complement(1521127..1522836) Synechococcus sp. JA-3-3Ab 3899212 YP_474943.1 CDS ctaC NC_007775.1 1522833 1523861 R identified by similarity to SP:P98054; match to protein family HMM PF00116; match to protein family HMM PF02790; cytochrome c oxidase subunit II complement(1522833..1523861) Synechococcus sp. JA-3-3Ab 3899213 YP_474944.1 CDS CYA_1515 NC_007775.1 1524408 1525343 D identified by match to protein family HMM PF02628; cytochrome oxidase assembly protein 1524408..1525343 Synechococcus sp. JA-3-3Ab 3899214 YP_474945.1 CDS cyoE NC_007775.1 1525396 1526391 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 1525396..1526391 Synechococcus sp. JA-3-3Ab 3899215 YP_474946.1 CDS CYA_1518 NC_007775.1 1527847 1529391 D identified by match to protein family HMM PF02321; outer membrane efflux family protein 1527847..1529391 Synechococcus sp. JA-3-3Ab 3899217 YP_474947.1 CDS rpsD NC_007775.1 1529634 1530245 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(1529634..1530245) Synechococcus sp. JA-3-3Ab 3899218 YP_474948.1 CDS gmd NC_007775.1 1530410 1531546 R identified by match to protein family HMM PF01370; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase complement(1530410..1531546) Synechococcus sp. JA-3-3Ab 3899219 YP_474949.1 CDS CYA_1521 NC_007775.1 1531693 1533054 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(1531693..1533054) Synechococcus sp. JA-3-3Ab 3899220 YP_474950.1 CDS CYA_1522 NC_007775.1 1533207 1534283 D identified by similarity to PIR:AB2451; hypothetical protein 1533207..1534283 Synechococcus sp. JA-3-3Ab 3899221 YP_474951.1 CDS hisZ NC_007775.1 1534364 1535596 D May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit 1534364..1535596 Synechococcus sp. JA-3-3Ab 3897129 YP_474952.1 CDS gyrB NC_007775.1 1535547 1537475 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(1535547..1537475) Synechococcus sp. JA-3-3Ab 3897130 YP_474953.1 CDS rimM NC_007775.1 1537657 1538217 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(1537657..1538217) Synechococcus sp. JA-3-3Ab 3897131 YP_474954.1 CDS CYA_1526 NC_007775.1 1538229 1539197 R identified by match to protein family HMM PF01145; HflC/HflK family protein complement(1538229..1539197) Synechococcus sp. JA-3-3Ab 3897132 YP_474955.1 CDS CYA_1527 NC_007775.1 1539214 1539321 D hypothetical protein 1539214..1539321 Synechococcus sp. JA-3-3Ab 3897133 YP_474956.1 CDS CYA_1528 NC_007775.1 1539402 1540394 D identified by match to protein family HMM PF01266; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 1539402..1540394 Synechococcus sp. JA-3-3Ab 3897134 YP_474957.1 CDS CYA_1529 NC_007775.1 1540474 1541559 D identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 1540474..1541559 Synechococcus sp. JA-3-3Ab 3897135 YP_474958.1 CDS CYA_1530 NC_007775.1 1541632 1542297 D hypothetical protein 1541632..1542297 Synechococcus sp. JA-3-3Ab 3897136 YP_474959.1 CDS CYA_1531 NC_007775.1 1542429 1543451 R identified by match to protein family HMM PF01551; M23B family peptidase complement(1542429..1543451) Synechococcus sp. JA-3-3Ab 3897137 YP_474960.1 CDS CYA_1532 NC_007775.1 1543567 1544442 D identified by match to protein family HMM PF04240; hypothetical protein 1543567..1544442 Synechococcus sp. JA-3-3Ab 3897138 YP_474961.1 CDS lspA NC_007775.1 1544448 1544918 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(1544448..1544918) Synechococcus sp. JA-3-3Ab 3897139 YP_474962.1 CDS CYA_1534 NC_007775.1 1545156 1545380 R hypothetical protein complement(1545156..1545380) Synechococcus sp. JA-3-3Ab 3897140 YP_474963.1 CDS cysC NC_007775.1 1545458 1545988 R converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase complement(1545458..1545988) Synechococcus sp. JA-3-3Ab 3897141 YP_474964.1 CDS argD NC_007775.1 1546079 1547335 D catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 1546079..1547335 Synechococcus sp. JA-3-3Ab 3897142 YP_474965.1 CDS CYA_1536 NC_007775.1 1547332 1547745 R hypothetical protein complement(1547332..1547745) Synechococcus sp. JA-3-3Ab 3897143 YP_474966.1 CDS CYA_1538 NC_007775.1 1547900 1548724 D identified by match to protein family HMM PF02633; creatininase 1547900..1548724 Synechococcus sp. JA-3-3Ab 3897144 YP_474967.1 CDS CYA_1539 NC_007775.1 1548851 1549513 D identified by match to protein family HMM PF05685; hypothetical protein 1548851..1549513 Synechococcus sp. JA-3-3Ab 3897145 YP_474968.1 CDS CYA_1540 NC_007775.1 1549537 1550202 D identified by similarity to GB:BAC91077.1; match to protein family HMM PF05685; hypothetical protein 1549537..1550202 Synechococcus sp. JA-3-3Ab 3897146 YP_474969.1 CDS CYA_1541 NC_007775.1 1550208 1550846 R identified by match to protein family HMM PF00325; Crp/FNR family transcriptional regulator complement(1550208..1550846) Synechococcus sp. JA-3-3Ab 3897147 YP_474970.1 CDS atpC NC_007775.1 1551104 1551511 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 1551104..1551511 Synechococcus sp. JA-3-3Ab 3897148 YP_474971.1 CDS CYA_1544 NC_007775.1 1551633 1552100 D identified by match to protein family HMM PF00376; MerR family transcriptional regulator 1551633..1552100 Synechococcus sp. JA-3-3Ab 3899930 YP_474972.1 CDS glmS NC_007775.1 1552061 1553908 R identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135; glucosamine--fructose-6-phosphate aminotransferase complement(1552061..1553908) Synechococcus sp. JA-3-3Ab 3899931 YP_474973.1 CDS CYA_1545 NC_007775.1 1553982 1555208 R identified by match to protein family HMM PF02470; mce related protein complement(1553982..1555208) Synechococcus sp. JA-3-3Ab 3899932 YP_474974.1 CDS CYA_1547 NC_007775.1 1556256 1557062 R identified by match to protein family HMM PF03741; TerC family membrane protein complement(1556256..1557062) Synechococcus sp. JA-3-3Ab 3899934 YP_474975.1 CDS CYA_1548 NC_007775.1 1557330 1558139 R identified by similarity to GB:AAD29318.1; circadian phase modifier CpmA-like protein complement(1557330..1558139) Synechococcus sp. JA-3-3Ab 3899935 YP_474976.1 CDS CYA_1549 NC_007775.1 1558160 1559056 R identified by match to protein family HMM PF00582; universal stress protein complement(1558160..1559056) Synechococcus sp. JA-3-3Ab 3899936 YP_474977.1 CDS dnaB NC_007775.1 1559184 1560959 R identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; replicative DNA helicase complement(1559184..1560959) Synechococcus sp. JA-3-3Ab 3899937 YP_474978.1 CDS rplI NC_007775.1 1561070 1561531 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(1561070..1561531) Synechococcus sp. JA-3-3Ab 3899938 YP_474979.1 CDS pstS-2 NC_007775.1 1561867 1562946 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975; match to protein family HMM TIGR01409; phosphate ABC transporter, phosphate-binding protein 1561867..1562946 Synechococcus sp. JA-3-3Ab 3899939 YP_474980.1 CDS pstC-1 NC_007775.1 1562971 1563939 D identified by similarity to SP:P07653; match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter, permease protein PstC 1562971..1563939 Synechococcus sp. JA-3-3Ab 3899940 YP_474981.1 CDS pstA-1 NC_007775.1 1563946 1564845 D identified by similarity to SP:P07654; match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 1563946..1564845 Synechococcus sp. JA-3-3Ab 3899941 YP_474982.1 CDS pstB-1 NC_007775.1 1564882 1565709 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1564882..1565709 Synechococcus sp. JA-3-3Ab 3899942 YP_474983.1 CDS CYA_1556 NC_007775.1 1565775 1566602 D identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A 1565775..1566602 Synechococcus sp. JA-3-3Ab 3899943 YP_474984.1 CDS CYA_1557 NC_007775.1 1566646 1567080 D identified by match to protein family HMM PF07719; hypothetical protein 1566646..1567080 Synechococcus sp. JA-3-3Ab 3899944 YP_474985.1 CDS CYA_1558 NC_007775.1 1567349 1567552 D hypothetical protein 1567349..1567552 Synechococcus sp. JA-3-3Ab 3899945 YP_474986.1 CDS sat NC_007775.1 1567851 1569032 R ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms; sulfate adenylyltransferase complement(1567851..1569032) Synechococcus sp. JA-3-3Ab 3899946 YP_474987.1 CDS CYA_1560 NC_007775.1 1569146 1569517 R hypothetical protein complement(1569146..1569517) Synechococcus sp. JA-3-3Ab 3899947 YP_474988.1 CDS CYA_1561 NC_007775.1 1569646 1570428 R identified by match to protein family HMM PF01656; chromosome partitioning protein ParA complement(1569646..1570428) Synechococcus sp. JA-3-3Ab 3899948 YP_474989.1 CDS glgC NC_007775.1 1570546 1571832 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 1570546..1571832 Synechococcus sp. JA-3-3Ab 3899863 YP_474990.1 CDS CYA_1563 NC_007775.1 1571985 1573757 D identified by match to protein family HMM PF03109; hypothetical protein 1571985..1573757 Synechococcus sp. JA-3-3Ab 3899864 YP_474991.1 CDS CYA_1564 NC_007775.1 1573800 1574174 D hypothetical protein 1573800..1574174 Synechococcus sp. JA-3-3Ab 3899865 YP_474992.1 CDS CYA_1565 NC_007775.1 1574337 1574666 D identified by similarity to GB:BAC08086.1; match to protein family HMM PF02325; hypothetical protein 1574337..1574666 Synechococcus sp. JA-3-3Ab 3899866 YP_474993.1 CDS CYA_1567 NC_007775.1 1574742 1576091 D Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 1574742..1576091 Synechococcus sp. JA-3-3Ab 3899867 YP_474994.1 CDS CYA_1566 NC_007775.1 1576088 1577257 R hypothetical protein complement(1576088..1577257) Synechococcus sp. JA-3-3Ab 3899868 YP_474995.1 CDS CYA_1568 NC_007775.1 1577385 1577690 D hypothetical protein 1577385..1577690 Synechococcus sp. JA-3-3Ab 3899869 YP_474996.1 CDS thiE NC_007775.1 1577759 1578805 D catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase 1577759..1578805 Synechococcus sp. JA-3-3Ab 3899870 YP_474997.1 CDS CYA_1570 NC_007775.1 1578942 1580483 D identified by match to protein family HMM PF00004; AAA ATPase 1578942..1580483 Synechococcus sp. JA-3-3Ab 3899871 YP_474998.1 CDS CYA_1571 NC_007775.1 1580613 1582763 D identified by match to protein family HMM PF01266; oxidoreductase, FAD-binding 1580613..1582763 Synechococcus sp. JA-3-3Ab 3899872 YP_474999.1 CDS CYA_1572 NC_007775.1 1583158 1583496 D hypothetical protein 1583158..1583496 Synechococcus sp. JA-3-3Ab 3899873 YP_475000.1 CDS CYA_1573 NC_007775.1 1583545 1583886 D identified by match to protein family HMM PF01230; histidine triad family protein 1583545..1583886 Synechococcus sp. JA-3-3Ab 3899874 YP_475001.1 CDS cobH-2 NC_007775.1 1583968 1584618 D catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase 1583968..1584618 Synechococcus sp. JA-3-3Ab 3899875 YP_475002.1 CDS CYA_1575 NC_007775.1 1584648 1585166 D hypothetical protein 1584648..1585166 Synechococcus sp. JA-3-3Ab 3899876 YP_475003.1 CDS CYA_1576 NC_007775.1 1585247 1586977 R identified by similarity to SP:Q8DJY2; match to protein family HMM PF00258; match to protein family HMM PF00753; match to protein family HMM PF01613; diflavin flavoprotein complement(1585247..1586977) Synechococcus sp. JA-3-3Ab 3899877 YP_475004.1 CDS CYA_1577 NC_007775.1 1587092 1588858 R identified by match to protein family HMM PF01926; GTP-binding protein complement(1587092..1588858) Synechococcus sp. JA-3-3Ab 3899878 YP_475005.1 CDS CYA_1578 NC_007775.1 1588905 1589078 R hypothetical protein complement(1588905..1589078) Synechococcus sp. JA-3-3Ab 3899879 YP_529503.1 CDS CYA_1579 NC_007775.1 1589130 1589561 R hypothetical protein complement(1589130..1589561) Synechococcus sp. JA-3-3Ab 3899880 YP_475006.1 CDS CYA_1580 NC_007775.1 1589713 1589835 R hypothetical protein complement(1589713..1589835) Synechococcus sp. JA-3-3Ab 3899881 YP_475007.1 CDS CYA_1581 NC_007775.1 1589902 1590858 R identified by match to protein family HMM PF02653; carbohydrate ABC transporter permease complement(1589902..1590858) Synechococcus sp. JA-3-3Ab 3899730 YP_475008.1 CDS CYA_1582 NC_007775.1 1590865 1591914 R identified by match to protein family HMM PF02653; carbohydrate ABC transporter permease complement(1590865..1591914) Synechococcus sp. JA-3-3Ab 3899731 YP_475009.1 CDS CYA_1583 NC_007775.1 1591904 1593466 R identified by match to protein family HMM PF00005; carbohydrate ABC transporter ATP-binding protein complement(1591904..1593466) Synechococcus sp. JA-3-3Ab 3899732 YP_475010.1 CDS CYA_1584 NC_007775.1 1593438 1594466 R identified by match to protein family HMM PF02608; match to protein family HMM TIGR01409; Tat (twin-arginine translocation) pathway signal sequence/basic membrane protein complement(1593438..1594466) Synechococcus sp. JA-3-3Ab 3899733 YP_475011.1 CDS CYA_1585 NC_007775.1 1594890 1596107 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase 1594890..1596107 Synechococcus sp. JA-3-3Ab 3899734 YP_475012.1 CDS codA NC_007775.1 1596165 1597439 D Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 1596165..1597439 Synechococcus sp. JA-3-3Ab 3899735 YP_475013.1 CDS CYA_1586 NC_007775.1 1597436 1597876 R hypothetical protein complement(1597436..1597876) Synechococcus sp. JA-3-3Ab 3899736 YP_475014.1 CDS CYA_1588 NC_007775.1 1597902 1598534 R identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5-formyltetrahydrofolate cyclo-ligase complement(1597902..1598534) Synechococcus sp. JA-3-3Ab 3899737 YP_475015.1 CDS CYA_1589 NC_007775.1 1598579 1599034 R identified by similarity to SP:P25138; match to protein family HMM PF00254; FKBP-type peptidyl-prolyl cis-trans isomerase complement(1598579..1599034) Synechococcus sp. JA-3-3Ab 3899738 YP_475016.1 CDS CYA_1590 NC_007775.1 1599102 1599743 R hypothetical protein complement(1599102..1599743) Synechococcus sp. JA-3-3Ab 3899739 YP_475017.1 CDS cbiG/cobJ-1 NC_007775.1 1599799 1601667 D identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466; match to protein family HMM TIGR02467; cbiG protein/precorrin-3B C17-methyltransferase 1599799..1601667 Synechococcus sp. JA-3-3Ab 3899740 YP_475018.1 CDS CYA_1592 NC_007775.1 1601699 1601950 R hypothetical protein complement(1601699..1601950) Synechococcus sp. JA-3-3Ab 3899741 YP_475019.1 CDS CYA_1593 NC_007775.1 1602098 1603957 D Catalyzes the transfer of electrons from NADH to ubiquinone; NAD(P)H-quinone oxidoreductase subunit F 1602098..1603957 Synechococcus sp. JA-3-3Ab 3899742 YP_475020.1 CDS CYA_1594 NC_007775.1 1603971 1605488 D identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH-ubiquinone/plastoquinone oxidoreductase subunit 4 family protein 1603971..1605488 Synechococcus sp. JA-3-3Ab 3899743 YP_475021.1 CDS CYA_1595 NC_007775.1 1605542 1606801 D identified by match to protein family HMM TIGR01964; CO2 hydration protein 1605542..1606801 Synechococcus sp. JA-3-3Ab 3899744 YP_475022.1 CDS CYA_1597 NC_007775.1 1607176 1608336 D identified by similarity to SP:P14776; match to protein family HMM PF00266; soluble hydrogenase, tritium exchange subunit 1607176..1608336 Synechococcus sp. JA-3-3Ab 3899746 YP_475023.1 CDS CYA_1598 NC_007775.1 1608479 1609147 D identified by match to protein family HMM PF02811; phosphotransferase domain-containing protein 1608479..1609147 Synechococcus sp. JA-3-3Ab 3899747 YP_475024.1 CDS CYA_1599 NC_007775.1 1609166 1610215 R identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885; VIC family potassium channel protein complement(1609166..1610215) Synechococcus sp. JA-3-3Ab 3898404 YP_475025.1 CDS CYA_1600 NC_007775.1 1610304 1610516 D identified by similarity to GB:BAC91745.1; hypothetical protein 1610304..1610516 Synechococcus sp. JA-3-3Ab 3898405 YP_475026.1 CDS CYA_1601 NC_007775.1 1610556 1610786 R hypothetical protein complement(1610556..1610786) Synechococcus sp. JA-3-3Ab 3898406 YP_475027.1 CDS petE NC_007775.1 1610938 1611348 R participates in electron transfer in photosystem I; plastocyanin complement(1610938..1611348) Synechococcus sp. JA-3-3Ab 3898407 YP_475028.1 CDS CYA_1604 NC_007775.1 1612112 1613059 D identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfAB 1612112..1613059 Synechococcus sp. JA-3-3Ab 3898409 YP_475029.1 CDS CYA_1605 NC_007775.1 1613457 1613624 R identified by similarity to PIR:AB2208; hypothetical protein complement(1613457..1613624) Synechococcus sp. JA-3-3Ab 3898410 YP_475030.1 CDS CYA_1606 NC_007775.1 1614027 1614413 D identified by similarity to GB:BAC08441.1; hypothetical protein 1614027..1614413 Synechococcus sp. JA-3-3Ab 3898411 YP_475031.1 CDS CYA_1607 NC_007775.1 1614468 1614686 D identified by similarity to GB:BAC91485.1; hypothetical protein 1614468..1614686 Synechococcus sp. JA-3-3Ab 3898412 YP_475032.1 CDS CYA_1608 NC_007775.1 1614729 1615568 D hypothetical protein 1614729..1615568 Synechococcus sp. JA-3-3Ab 3898413 YP_475033.1 CDS CYA_1609 NC_007775.1 1615590 1616315 D identified by match to protein family HMM PF00005; cobalt ABC transporter ATP-binding protein 1615590..1616315 Synechococcus sp. JA-3-3Ab 3898414 YP_475034.1 CDS CYA_1610 NC_007775.1 1616391 1616552 D hypothetical protein 1616391..1616552 Synechococcus sp. JA-3-3Ab 3898415 YP_475035.1 CDS ccmK-1 NC_007775.1 1616847 1617155 D identified by similarity to SP:Q03511; match to protein family HMM PF00936; carbon dioxide concentrating mechanism protein CcmK 1616847..1617155 Synechococcus sp. JA-3-3Ab 3898416 YP_475036.1 CDS ccmK-2 NC_007775.1 1617247 1617588 D identified by similarity to SP:Q03511; match to protein family HMM PF00936; carbon dioxide concentrating mechanism protein CcmK 1617247..1617588 Synechococcus sp. JA-3-3Ab 3898417 YP_475037.1 CDS ccmL NC_007775.1 1617589 1617888 D identified by similarity to SP:P72759; match to protein family HMM PF03319; carbon dioxide concentrating mechanism protein CcmL 1617589..1617888 Synechococcus sp. JA-3-3Ab 3898418 YP_475038.1 CDS ccmM NC_007775.1 1617937 1619901 D identified by similarity to SP:Q03513; carbon dioxide concentrating mechanism protein CcmM 1617937..1619901 Synechococcus sp. JA-3-3Ab 3898419 YP_475039.1 CDS CYA_1615 NC_007775.1 1619982 1620671 D hypothetical protein 1619982..1620671 Synechococcus sp. JA-3-3Ab 3898420 YP_475040.1 CDS CYA_1616 NC_007775.1 1620703 1621419 D identified by match to protein family HMM PF00936; microcompartments family protein 1620703..1621419 Synechococcus sp. JA-3-3Ab 3898421 YP_475041.1 CDS CYA_1617 NC_007775.1 1621688 1622101 D hypothetical protein 1621688..1622101 Synechococcus sp. JA-3-3Ab 3898422 YP_475042.1 CDS rplS NC_007775.1 1622498 1622881 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(1622498..1622881) Synechococcus sp. JA-3-3Ab 3897578 YP_475043.1 CDS CYA_1620 NC_007775.1 1623053 1624450 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01167; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 1623053..1624450 Synechococcus sp. JA-3-3Ab 3897579 YP_475044.1 CDS macB NC_007775.1 1624447 1625658 D identified by similarity to SP:P75831; match to protein family HMM PF02687; macrolide ABC transporter permease 1624447..1625658 Synechococcus sp. JA-3-3Ab 3897580 YP_475045.1 CDS thrB NC_007775.1 1625731 1626651 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1625731..1626651 Synechococcus sp. JA-3-3Ab 3897581 YP_475046.1 CDS dgkA NC_007775.1 1626880 1627374 R identified by match to protein family HMM PF01219; diacylglycerol kinase complement(1626880..1627374) Synechococcus sp. JA-3-3Ab 3897582 YP_475047.1 CDS CYA_1624 NC_007775.1 1627406 1628002 R identified by similarity to SP:Q8Z032; match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein complement(1627406..1628002) Synechococcus sp. JA-3-3Ab 3897583 YP_475048.1 CDS eda NC_007775.1 1628283 1629023 R identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182; 2-dehydro-3-deoxyphosphogluconate aldolase complement(1628283..1629023) Synechococcus sp. JA-3-3Ab 3897584 YP_475049.1 CDS CYA_1627 NC_007775.1 1629793 1630971 D identified by match to protein family HMM PF01551; M23B family peptidase 1629793..1630971 Synechococcus sp. JA-3-3Ab 3897585 YP_475050.1 CDS CYA_1626 NC_007775.1 1630962 1631612 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1630962..1631612) Synechococcus sp. JA-3-3Ab 3897586 YP_475051.1 CDS CYA_1628 NC_007775.1 1631671 1631919 R identified by similarity to GB:BAC90997.1; hypothetical protein complement(1631671..1631919) Synechococcus sp. JA-3-3Ab 3897587 YP_475052.1 CDS CYA_1629 NC_007775.1 1632071 1632571 D identified by match to protein family HMM PF01451; low molecular weight phosphotyrosine protein phosphatase family protein 1632071..1632571 Synechococcus sp. JA-3-3Ab 3897588 YP_475053.1 CDS CYA_1630 NC_007775.1 1632594 1632902 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(1632594..1632902) Synechococcus sp. JA-3-3Ab 3897589 YP_475054.1 CDS CYA_1631 NC_007775.1 1632979 1633587 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J complement(1632979..1633587) Synechococcus sp. JA-3-3Ab 3897590 YP_475055.1 CDS CYA_1632 NC_007775.1 1633707 1634978 R identified by similarity to GB:CAD84826.1; match to protein family HMM PF04536; hypothetical protein complement(1633707..1634978) Synechococcus sp. JA-3-3Ab 3897591 YP_475056.1 CDS CYA_1633 NC_007775.1 1635202 1635933 R identified by match to protein family HMM PF03099; biotin/lipoate A/B protein ligase family protein complement(1635202..1635933) Synechococcus sp. JA-3-3Ab 3897592 YP_475057.1 CDS CYA_1634 NC_007775.1 1635933 1636400 R identified by similarity to PIR:AB2051; hypothetical protein complement(1635933..1636400) Synechococcus sp. JA-3-3Ab 3897593 YP_475058.1 CDS mtnN NC_007775.1 1636901 1637653 D identified by match to protein family HMM PF01048; match to protein family HMM TIGR01704; MTA/SAH nucleosidase 1636901..1637653 Synechococcus sp. JA-3-3Ab 3897595 YP_475059.1 CDS rpsB NC_007775.1 1638377 1639180 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1638377..1639180 Synechococcus sp. JA-3-3Ab 3898196 YP_475060.1 CDS tsf NC_007775.1 1639356 1640204 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1639356..1640204 Synechococcus sp. JA-3-3Ab 3898197 YP_475061.1 CDS CYA_1640 NC_007775.1 1640411 1641823 D identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family protein 1640411..1641823 Synechococcus sp. JA-3-3Ab 3898198 YP_475062.1 CDS CYA_1641 NC_007775.1 1641847 1642875 D identified by match to protein family HMM PF00037; match to protein family HMM TIGR00276; iron-sulfur cluster binding protein 1641847..1642875 Synechococcus sp. JA-3-3Ab 3898199 YP_475063.1 CDS CYA_1642 NC_007775.1 1642886 1643128 R identified by match to protein family HMM PF07282; transposase, truncation complement(1642886..1643128) Synechococcus sp. JA-3-3Ab 3898200 YP_475064.1 CDS CYA_1643 NC_007775.1 1643344 1643526 D hypothetical protein 1643344..1643526 Synechococcus sp. JA-3-3Ab 3898201 YP_475065.1 CDS CYA_1645 NC_007775.1 1644320 1644937 D identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 1644320..1644937 Synechococcus sp. JA-3-3Ab 3898203 YP_475066.1 CDS CYA_1646 NC_007775.1 1644792 1646072 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 1644792..1646072 Synechococcus sp. JA-3-3Ab 3898204 YP_475067.1 CDS dnaN NC_007775.1 1646277 1647641 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(1646277..1647641) Synechococcus sp. JA-3-3Ab 3898206 YP_475068.1 CDS CYA_1649 NC_007775.1 1648111 1648440 D hypothetical protein 1648111..1648440 Synechococcus sp. JA-3-3Ab 3898207 YP_475069.1 CDS CYA_1650 NC_007775.1 1648460 1649500 R identified by match to protein family HMM PF00724; match to protein family HMM PF01207; match to protein family HMM TIGR00737; dihydrouridine synthase family protein complement(1648460..1649500) Synechococcus sp. JA-3-3Ab 3898208 YP_475070.1 CDS rpsR NC_007775.1 1649564 1649779 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(1649564..1649779) Synechococcus sp. JA-3-3Ab 3898209 YP_475071.1 CDS rpmG NC_007775.1 1649809 1650003 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 complement(1649809..1650003) Synechococcus sp. JA-3-3Ab 3898210 YP_475072.1 CDS CYA_1653 NC_007775.1 1650093 1650863 R identified by match to protein family HMM PF06271; RDD family protein complement(1650093..1650863) Synechococcus sp. JA-3-3Ab 3898211 YP_475073.1 CDS rnz NC_007775.1 1650995 1651969 R identified by similarity to SP:P54548; match to protein family HMM PF00753; match to protein family HMM TIGR02651; ribonuclease Z complement(1650995..1651969) Synechococcus sp. JA-3-3Ab 3898212 YP_475074.1 CDS CYA_1655 NC_007775.1 1652092 1652448 D identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; iron-sulfur cluster assembly accessory protein 1652092..1652448 Synechococcus sp. JA-3-3Ab 3898213 YP_475075.1 CDS CYA_1656 NC_007775.1 1652449 1653678 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator complement(1652449..1653678) Synechococcus sp. JA-3-3Ab 3897841 YP_475076.1 CDS CYA_1657 NC_007775.1 1653665 1658044 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator complement(1653665..1658044) Synechococcus sp. JA-3-3Ab 3897842 YP_475077.1 CDS CYA_1658 NC_007775.1 1658286 1661042 R identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517; ATPase P complement(1658286..1661042) Synechococcus sp. JA-3-3Ab 3897843 YP_475078.1 CDS CYA_1659 NC_007775.1 1661167 1662945 D identified by similarity to SP:P74373; match to protein family HMM PF00258; match to protein family HMM PF00753; match to protein family HMM PF01613; diflavin flavoprotein 1661167..1662945 Synechococcus sp. JA-3-3Ab 3897844 YP_475079.1 CDS CYA_1660 NC_007775.1 1662980 1663897 D hypothetical protein 1662980..1663897 Synechococcus sp. JA-3-3Ab 3897845 YP_475080.1 CDS CYA_1661 NC_007775.1 1663936 1664334 D identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfA 1663936..1664334 Synechococcus sp. JA-3-3Ab 3897846 YP_475081.1 CDS CYA_1662 NC_007775.1 1664316 1664882 D identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfB 1664316..1664882 Synechococcus sp. JA-3-3Ab 3897847 YP_475082.1 CDS CYA_1663 NC_007775.1 1665244 1666608 D identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 1665244..1666608 Synechococcus sp. JA-3-3Ab 3897848 YP_475083.1 CDS CYA_1664 NC_007775.1 1666620 1667954 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 1666620..1667954 Synechococcus sp. JA-3-3Ab 3897849 YP_475084.1 CDS CYA_1665 NC_007775.1 1668088 1669062 D identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; YihY family protein 1668088..1669062 Synechococcus sp. JA-3-3Ab 3897850 YP_475085.1 CDS CYA_1666 NC_007775.1 1669031 1670131 D identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 1669031..1670131 Synechococcus sp. JA-3-3Ab 3897851 YP_475086.1 CDS purE NC_007775.1 1670101 1670631 D identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit 1670101..1670631 Synechococcus sp. JA-3-3Ab 3897852 YP_475087.1 CDS CYA_1668 NC_007775.1 1670799 1671482 D identified by similarity to GB:BAD78557.1; hypothetical protein 1670799..1671482 Synechococcus sp. JA-3-3Ab 3897853 YP_475088.1 CDS CYA_1669 NC_007775.1 1671618 1672607 D identified by match to protein family HMM PF02492; match to protein family HMM PF07683; cobalamin biosynthesis protein CobW 1671618..1672607 Synechococcus sp. JA-3-3Ab 3897854 YP_475089.1 CDS CYA_1670 NC_007775.1 1672706 1673014 D hypothetical protein 1672706..1673014 Synechococcus sp. JA-3-3Ab 3897855 YP_475090.1 CDS CYA_1672 NC_007775.1 1673017 1673238 D hypothetical protein 1673017..1673238 Synechococcus sp. JA-3-3Ab 3897856 YP_475091.1 CDS CYA_1671 NC_007775.1 1673208 1673291 R hypothetical protein complement(1673208..1673291) Synechococcus sp. JA-3-3Ab 3897857 YP_475092.1 CDS guaA NC_007775.1 1673291 1674907 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(1673291..1674907) Synechococcus sp. JA-3-3Ab 3897858 YP_475093.1 CDS CYA_1674 NC_007775.1 1675216 1676220 D hypothetical protein 1675216..1676220 Synechococcus sp. JA-3-3Ab 3897859 YP_475094.1 CDS gidB NC_007775.1 1676217 1676999 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 1676217..1676999 Synechococcus sp. JA-3-3Ab 3897519 YP_475095.1 CDS CYA_1676 NC_007775.1 1677020 1677130 R hypothetical protein complement(1677020..1677130) Synechococcus sp. JA-3-3Ab 3897520 YP_475096.1 CDS CYA_1677 NC_007775.1 1677194 1677484 D identified by match to protein family HMM PF00076; RNA-binding protein 1677194..1677484 Synechococcus sp. JA-3-3Ab 3897521 YP_475097.1 CDS CYA_1678 NC_007775.1 1677524 1678357 R identified by similarity to GB:AAD56938.1; match to protein family HMM PF00950; manganese/zinc/iron chelate ABC transporter permease complement(1677524..1678357) Synechococcus sp. JA-3-3Ab 3897522 YP_475098.1 CDS CYA_1679 NC_007775.1 1678373 1679128 R identified by match to protein family HMM PF00005; manganese/zinc/iron chelate ABC transporter ATP-binding protein complement(1678373..1679128) Synechococcus sp. JA-3-3Ab 3897523 YP_475099.1 CDS CYA_1680 NC_007775.1 1679191 1680126 D identified by similarity to SP:P31305; match to protein family HMM PF01297; cation ABC transporter cation-binding protein 1679191..1680126 Synechococcus sp. JA-3-3Ab 3897524 YP_475100.1 CDS aspS NC_007775.1 1680199 1682004 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1680199..1682004 Synechococcus sp. JA-3-3Ab 3897525 YP_475101.1 CDS CYA_1682 NC_007775.1 1682064 1682840 D NADH-dependent; catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 1682064..1682840 Synechococcus sp. JA-3-3Ab 3897526 YP_475102.1 CDS CYA_1683 NC_007775.1 1682862 1683998 D identified by match to protein family HMM PF01594; hypothetical protein 1682862..1683998 Synechococcus sp. JA-3-3Ab 3897527 YP_475103.1 CDS CYA_1684 NC_007775.1 1684079 1684966 R hypothetical protein complement(1684079..1684966) Synechococcus sp. JA-3-3Ab 3897528 YP_475104.1 CDS CYA_1685 NC_007775.1 1684963 1685463 R hypothetical protein complement(1684963..1685463) Synechococcus sp. JA-3-3Ab 3897529 YP_475105.1 CDS psbV NC_007775.1 1685534 1686058 R low-potential cytochrome c; with PsbO, PsbP, PsbQ, and PsbU makes up the oxygen-evolving complex of photosystem II; cytochrome c-550 complement(1685534..1686058) Synechococcus sp. JA-3-3Ab 3897530 YP_475106.1 CDS psbV NC_007775.1 1686058 1686594 R low-potential cytochrome c; with PsbO, PsbP, PsbQ, and PsbU makes up the oxygen-evolving complex of photosystem II; cytochrome c-550 complement(1686058..1686594) Synechococcus sp. JA-3-3Ab 3897531 YP_475107.1 CDS CYA_1688 NC_007775.1 1686986 1688047 D identified by similarity to GB:BAC07614.1; hypothetical protein 1686986..1688047 Synechococcus sp. JA-3-3Ab 3897532 YP_475108.1 CDS CYA_1689 NC_007775.1 1688040 1689731 D identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 1688040..1689731 Synechococcus sp. JA-3-3Ab 3897533 YP_475109.1 CDS radC NC_007775.1 1689739 1690470 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 1689739..1690470 Synechococcus sp. JA-3-3Ab 3897534 YP_475110.1 CDS fmt NC_007775.1 1690555 1691523 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(1690555..1691523) Synechococcus sp. JA-3-3Ab 3897535 YP_475111.1 CDS CYA_1692 NC_007775.1 1691548 1692159 R hypothetical protein complement(1691548..1692159) Synechococcus sp. JA-3-3Ab 3897536 YP_475112.1 CDS mgtE-2 NC_007775.1 1692332 1693732 R identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter complement(1692332..1693732) Synechococcus sp. JA-3-3Ab 3897537 YP_475113.1 CDS CYA_1694 NC_007775.1 1694021 1695745 R identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein complement(1694021..1695745) Synechococcus sp. JA-3-3Ab 3897538 YP_475114.1 CDS CYA_1695 NC_007775.1 1696037 1697485 D hypothetical protein 1696037..1697485 Synechococcus sp. JA-3-3Ab 3897462 YP_475115.1 CDS CYA_1696 NC_007775.1 1697729 1699789 D identified by similarity to PIR:H83315; match to protein family HMM PF05787; hypothetical protein 1697729..1699789 Synechococcus sp. JA-3-3Ab 3897463 YP_475116.1 CDS ilvD NC_007775.1 1699913 1701610 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(1699913..1701610) Synechococcus sp. JA-3-3Ab 3897464 YP_475117.1 CDS fbp NC_007775.1 1701867 1702865 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 1701867..1702865 Synechococcus sp. JA-3-3Ab 3897465 YP_475118.1 CDS zwf NC_007775.1 1702907 1704457 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1702907..1704457 Synechococcus sp. JA-3-3Ab 3897466 YP_475119.1 CDS CYA_1700 NC_007775.1 1704610 1705548 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; hypothetical protein 1704610..1705548 Synechococcus sp. JA-3-3Ab 3897467 YP_475120.1 CDS dxs NC_007775.1 1705551 1707500 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(1705551..1707500) Synechococcus sp. JA-3-3Ab 3897468 YP_475121.1 CDS cysK NC_007775.1 1708008 1708988 D identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 1708008..1708988 Synechococcus sp. JA-3-3Ab 3897469 YP_475122.1 CDS ileS NC_007775.1 1709018 1711828 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(1709018..1711828) Synechococcus sp. JA-3-3Ab 3897470 YP_475123.1 CDS CYA_1704 NC_007775.1 1712348 1713088 R hypothetical protein complement(1712348..1713088) Synechococcus sp. JA-3-3Ab 3897471 YP_475124.1 CDS CYA_1705 NC_007775.1 1713324 1713767 D identified by match to protein family HMM PF00581; rhodanese domain-containing protein 1713324..1713767 Synechococcus sp. JA-3-3Ab 3897472 YP_475125.1 CDS CYA_1706 NC_007775.1 1713944 1715746 D identified by match to protein family HMM PF00557; M24B family peptidase 1713944..1715746 Synechococcus sp. JA-3-3Ab 3897473 YP_475126.1 CDS CYA_1707 NC_007775.1 1715835 1716260 D hypothetical protein 1715835..1716260 Synechococcus sp. JA-3-3Ab 3897474 YP_475127.1 CDS CYA_1709 NC_007775.1 1717994 1719319 R identified by match to protein family HMM PF00155; aminotransferase, classes I and II complement(1717994..1719319) Synechococcus sp. JA-3-3Ab 3897476 YP_475128.1 CDS CYA_1710 NC_007775.1 1719052 1720002 R hypothetical protein complement(1719052..1720002) Synechococcus sp. JA-3-3Ab 3897477 YP_475129.1 CDS CYA_1711 NC_007775.1 1720146 1720778 R hypothetical protein complement(1720146..1720778) Synechococcus sp. JA-3-3Ab 3897478 YP_475130.1 CDS pyrF NC_007775.1 1720790 1721488 R identified by match to protein family HMM PF00215; match to protein family HMM TIGR01740; orotidine 5'-phosphate decarboxylase complement(1720790..1721488) Synechococcus sp. JA-3-3Ab 3897479 YP_475131.1 CDS CYA_1713 NC_007775.1 1721509 1722021 R hypothetical protein complement(1721509..1722021) Synechococcus sp. JA-3-3Ab 3897480 YP_475132.1 CDS CYA_1714 NC_007775.1 1721996 1722337 R hypothetical protein complement(1721996..1722337) Synechococcus sp. JA-3-3Ab 3897262 YP_475133.1 CDS CYA_1715 NC_007775.1 1722402 1723214 R identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein complement(1722402..1723214) Synechococcus sp. JA-3-3Ab 3897263 YP_475134.1 CDS CYA_1716 NC_007775.1 1723211 1723624 R identified by similarity to GB:BAC08662.1; hypothetical protein complement(1723211..1723624) Synechococcus sp. JA-3-3Ab 3897264 YP_475135.1 CDS CYA_1717 NC_007775.1 1723769 1724923 D identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832; anion:cation symporter (ACS) family protein 1723769..1724923 Synechococcus sp. JA-3-3Ab 3897265 YP_475136.1 CDS CYA_1719 NC_007775.1 1724940 1725356 D identified by similarity to PIR:AC2156; match to protein family HMM PF02656; hypothetical protein 1724940..1725356 Synechococcus sp. JA-3-3Ab 3897266 YP_475137.1 CDS CYA_1718 NC_007775.1 1725323 1725685 R identified by match to protein family HMM PF01022; ArsR family transcriptional regulator complement(1725323..1725685) Synechococcus sp. JA-3-3Ab 3897267 YP_475138.1 CDS CYA_1720 NC_007775.1 1725843 1726559 D identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 1725843..1726559 Synechococcus sp. JA-3-3Ab 3897268 YP_475139.1 CDS CYA_1721 NC_007775.1 1726657 1727124 D identified by match to protein family HMM PF01724; hypothetical protein 1726657..1727124 Synechococcus sp. JA-3-3Ab 3897269 YP_475140.1 CDS CYA_1722 NC_007775.1 1727144 1727725 D identified by match to protein family HMM PF00581; rhodanese domain-containing protein 1727144..1727725 Synechococcus sp. JA-3-3Ab 3897270 YP_475141.1 CDS sulP NC_007775.1 1727722 1729503 D identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815; sulfate permease 1727722..1729503 Synechococcus sp. JA-3-3Ab 3897271 YP_475142.1 CDS CYA_1723 NC_007775.1 1729478 1730680 R identified by similarity to GB:BAC10028.1; hypothetical protein complement(1729478..1730680) Synechococcus sp. JA-3-3Ab 3897272 YP_475143.1 CDS trx-2 NC_007775.1 1730944 1731276 D identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 1730944..1731276 Synechococcus sp. JA-3-3Ab 3897273 YP_475144.1 CDS lipB NC_007775.1 1731290 1732072 D lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism; lipoyltransferase 1731290..1732072 Synechococcus sp. JA-3-3Ab 3897274 YP_475145.1 CDS CYA_1726 NC_007775.1 1732069 1732401 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein complement(1732069..1732401) Synechococcus sp. JA-3-3Ab 3897275 YP_475146.1 CDS CYA_1728 NC_007775.1 1732498 1733079 R identified by similarity to GB:BAD70760.1; match to protein family HMM PF05685; hypothetical protein complement(1732498..1733079) Synechococcus sp. JA-3-3Ab 3897276 YP_475147.1 CDS purB NC_007775.1 1733213 1734508 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1733213..1734508 Synechococcus sp. JA-3-3Ab 3897277 YP_475148.1 CDS pyrB NC_007775.1 1734518 1735498 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1734518..1735498 Synechococcus sp. JA-3-3Ab 3897278 YP_475149.1 CDS CYA_1731 NC_007775.1 1735747 1735908 R hypothetical protein complement(1735747..1735908) Synechococcus sp. JA-3-3Ab 3897279 YP_475150.1 CDS pstS-3 NC_007775.1 1736016 1737077 D identified by similarity to SP:P06128; match to protein family HMM PF01547; match to protein family HMM TIGR00975; phosphate ABC transporter, phosphate-binding protein 1736016..1737077 Synechococcus sp. JA-3-3Ab 3897280 YP_475151.1 CDS pstC-2 NC_007775.1 1737226 1738209 D identified by similarity to SP:P07653; match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter, permease protein PstC 1737226..1738209 Synechococcus sp. JA-3-3Ab 3897281 YP_475152.1 CDS pstA-2 NC_007775.1 1738248 1739141 D identified by similarity to SP:P07654; match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 1738248..1739141 Synechococcus sp. JA-3-3Ab 3898528 YP_475153.1 CDS pstB-2 NC_007775.1 1739212 1740009 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1739212..1740009 Synechococcus sp. JA-3-3Ab 3898529 YP_475154.1 CDS CYA_1736 NC_007775.1 1740122 1741489 D identified by match to protein family HMM PF01565; FAD-binding protein 1740122..1741489 Synechococcus sp. JA-3-3Ab 3898530 YP_475155.1 CDS CYA_1737 NC_007775.1 1741648 1742082 R identified by match to protein family HMM PF01724; hypothetical protein complement(1741648..1742082) Synechococcus sp. JA-3-3Ab 3898531 YP_475156.1 CDS CYA_1738 NC_007775.1 1742438 1743493 R identified by match to protein family HMM PF03773; permease complement(1742438..1743493) Synechococcus sp. JA-3-3Ab 3898532 YP_475157.1 CDS CYA_1739 NC_007775.1 1743572 1744708 R catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase complement(1743572..1744708) Synechococcus sp. JA-3-3Ab 3898533 YP_475158.1 CDS CYA_1740 NC_007775.1 1744902 1745444 R identified by similarity to PIR:AI2373; match to protein family HMM PF05991; hypothetical protein complement(1744902..1745444) Synechococcus sp. JA-3-3Ab 3898534 YP_475159.1 CDS CYA_1741 NC_007775.1 1745846 1747699 D identified by match to protein family HMM PF03109; hypothetical protein 1745846..1747699 Synechococcus sp. JA-3-3Ab 3898535 YP_475160.1 CDS CYA_1742 NC_007775.1 1747942 1748325 R hypothetical protein complement(1747942..1748325) Synechococcus sp. JA-3-3Ab 3898536 YP_475161.1 CDS CYA_1743 NC_007775.1 1748697 1749167 R identified by similarity to GB:BAC88789.1; hypothetical protein complement(1748697..1749167) Synechococcus sp. JA-3-3Ab 3898537 YP_475162.1 CDS CYA_1744 NC_007775.1 1749395 1749670 D identified by similarity to GB:BAC09035.1; match to protein family HMM PF05421; hypothetical protein 1749395..1749670 Synechococcus sp. JA-3-3Ab 3898538 YP_475163.1 CDS CYA_1745 NC_007775.1 1749682 1749852 D light-independent protochlorophyllide reductase subunit B, truncation 1749682..1749852 Synechococcus sp. JA-3-3Ab 3898539 YP_475164.1 CDS CYA_1746 NC_007775.1 1749936 1751471 D identified by match to protein family HMM PF02163; M50B family peptidase 1749936..1751471 Synechococcus sp. JA-3-3Ab 3898540 YP_475165.1 CDS CYA_1747 NC_007775.1 1751516 1753342 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase 1751516..1753342 Synechococcus sp. JA-3-3Ab 3898541 YP_475166.1 CDS psbA-2 NC_007775.1 1753541 1754599 R identified by match to protein family HMM PF00124; match to protein family HMM TIGR01151; photosystem II protein D1 complement(1753541..1754599) Synechococcus sp. JA-3-3Ab 3898542 YP_475167.1 CDS carB NC_007775.1 1754923 1758147 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(1754923..1758147) Synechococcus sp. JA-3-3Ab 3898543 YP_475168.1 CDS CYA_1750 NC_007775.1 1758557 1759216 R subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit B complement(1758557..1759216) Synechococcus sp. JA-3-3Ab 3898544 YP_475169.1 CDS CYA_1751 NC_007775.1 1759213 1759734 R hypothetical protein complement(1759213..1759734) Synechococcus sp. JA-3-3Ab 3898545 YP_475170.1 CDS CYA_1752 NC_007775.1 1759744 1760025 R hypothetical protein complement(1759744..1760025) Synechococcus sp. JA-3-3Ab 3898546 YP_475171.1 CDS CYA_1753 NC_007775.1 1760037 1760288 R hypothetical protein complement(1760037..1760288) Synechococcus sp. JA-3-3Ab 3898547 YP_475172.1 CDS CYA_1754 NC_007775.1 1760285 1760671 R hypothetical protein complement(1760285..1760671) Synechococcus sp. JA-3-3Ab 3898548 YP_475173.1 CDS CYA_1755 NC_007775.1 1760673 1762163 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D complement(1760673..1762163) Synechococcus sp. JA-3-3Ab 3898549 YP_475174.1 CDS CYA_1756 NC_007775.1 1762156 1762494 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C complement(1762156..1762494) Synechococcus sp. JA-3-3Ab 3898550 YP_475175.1 CDS CYA_1758 NC_007775.1 1764135 1764590 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1764135..1764590 Synechococcus sp. JA-3-3Ab 3898552 YP_475176.1 CDS CYA_1759 NC_007775.1 1764600 1764986 R hypothetical protein complement(1764600..1764986) Synechococcus sp. JA-3-3Ab 3898553 YP_475177.1 CDS CYA_1760 NC_007775.1 1765417 1765914 D identified by match to protein family HMM PF05154; TM2 domain-containing protein 1765417..1765914 Synechococcus sp. JA-3-3Ab 3898554 YP_475178.1 CDS CYA_1761 NC_007775.1 1765922 1766704 R identified by match to protein family HMM PF01061; ABC-2 type transporter, permease complement(1765922..1766704) Synechococcus sp. JA-3-3Ab 3898555 YP_475179.1 CDS CYA_1762 NC_007775.1 1766701 1767636 R identified by similarity to SP:P32010; match to protein family HMM PF00005; drug exporter ABC transporter ATP-binding protein complement(1766701..1767636) Synechococcus sp. JA-3-3Ab 3898556 YP_475180.1 CDS mfd NC_007775.1 1767740 1771210 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor complement(1767740..1771210) Synechococcus sp. JA-3-3Ab 3898557 YP_475181.1 CDS cydA NC_007775.1 1771687 1773120 D identified by similarity to SP:P11026; match to protein family HMM PF01654; cytochrome d ubiquinol oxidase, subunit I 1771687..1773120 Synechococcus sp. JA-3-3Ab 3898558 YP_475182.1 CDS cydB NC_007775.1 1773202 1774251 D identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase, subunit II 1773202..1774251 Synechococcus sp. JA-3-3Ab 3898559 YP_475183.1 CDS CYA_1765 NC_007775.1 1774248 1774364 R hypothetical protein complement(1774248..1774364) Synechococcus sp. JA-3-3Ab 3898560 YP_475184.1 CDS CYA_1767 NC_007775.1 1774361 1776115 R identified by match to protein family HMM PF05552; hypothetical protein complement(1774361..1776115) Synechococcus sp. JA-3-3Ab 3898561 YP_475185.1 CDS rimI NC_007775.1 1776482 1777009 R identified by match to protein family HMM PF00583; ribosomal-protein-alanine acetyltransferase complement(1776482..1777009) Synechococcus sp. JA-3-3Ab 3898562 YP_475186.1 CDS CYA_1769 NC_007775.1 1777016 1777441 R hypothetical protein complement(1777016..1777441) Synechococcus sp. JA-3-3Ab 3898563 YP_475187.1 CDS purK NC_007775.1 1777438 1778568 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(1777438..1778568) Synechococcus sp. JA-3-3Ab 3898564 YP_475188.1 CDS CYA_1771 NC_007775.1 1778635 1778847 D hypothetical protein 1778635..1778847 Synechococcus sp. JA-3-3Ab 3898565 YP_475189.1 CDS CYA_1772 NC_007775.1 1778902 1779495 D identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 1778902..1779495 Synechococcus sp. JA-3-3Ab 3898585 YP_475190.1 CDS CYA_1773 NC_007775.1 1779350 1780630 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 1779350..1780630 Synechococcus sp. JA-3-3Ab 3898586 YP_475191.1 CDS CYA_1774 NC_007775.1 1780608 1781207 D hypothetical protein 1780608..1781207 Synechococcus sp. JA-3-3Ab 3898587 YP_475192.1 CDS trmD NC_007775.1 1781213 1781974 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1781213..1781974 Synechococcus sp. JA-3-3Ab 3898588 YP_475193.1 CDS CYA_1776 NC_007775.1 1781965 1782318 D hypothetical protein 1781965..1782318 Synechococcus sp. JA-3-3Ab 3898589 YP_475194.1 CDS secE NC_007775.1 1782420 1782686 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 1782420..1782686 Synechococcus sp. JA-3-3Ab 3898590 YP_475195.1 CDS nusG NC_007775.1 1782770 1783441 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 1782770..1783441 Synechococcus sp. JA-3-3Ab 3898591 YP_475196.1 CDS rplK NC_007775.1 1783451 1783876 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 1783451..1783876 Synechococcus sp. JA-3-3Ab 3898592 YP_475197.1 CDS rplA NC_007775.1 1783976 1784686 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1783976..1784686 Synechococcus sp. JA-3-3Ab 3898593 YP_475198.1 CDS CYA_1781 NC_007775.1 1784679 1784789 D hypothetical protein 1784679..1784789 Synechococcus sp. JA-3-3Ab 3898594 YP_475199.1 CDS rplJ NC_007775.1 1785005 1785568 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 1785005..1785568 Synechococcus sp. JA-3-3Ab 3898595 YP_475200.1 CDS rplL NC_007775.1 1785642 1786055 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 1785642..1786055 Synechococcus sp. JA-3-3Ab 3898596 YP_475201.1 CDS CYA_1783 NC_007775.1 1785659 1786702 R hypothetical protein complement(1785659..1786702) Synechococcus sp. JA-3-3Ab 3898597 YP_475202.1 CDS oxaA NC_007775.1 1786385 1787563 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 1786385..1787563 Synechococcus sp. JA-3-3Ab 3898598 YP_475203.1 CDS CYA_1786 NC_007775.1 1787607 1788275 D identified by match to protein family HMM PF01424; R3H domain-containing protein 1787607..1788275 Synechococcus sp. JA-3-3Ab 3898599 YP_475204.1 CDS CYA_1787 NC_007775.1 1788361 1788864 D identified by match to protein family HMM PF02620; hypothetical protein 1788361..1788864 Synechococcus sp. JA-3-3Ab 3898600 YP_475205.1 CDS ubiA NC_007775.1 1788917 1789828 D phytyltransferase acting specifically in the tocopherol biosynthetic pathway; member of the UbiA prenyltransferase family which catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; tocopherol phytyltransferase 1788917..1789828 Synechococcus sp. JA-3-3Ab 3898601 YP_475206.1 CDS CYA_1789 NC_007775.1 1789887 1790675 R identified by match to protein family HMM PF01479; S4 domain-containing protein complement(1789887..1790675) Synechococcus sp. JA-3-3Ab 3898602 YP_475207.1 CDS CYA_1791 NC_007775.1 1790928 1792973 R identified by similarity to SP:Q01262; match to protein family HMM PF01968; match to protein family HMM PF05378; hydantoin utilization protein A complement(1790928..1792973) Synechococcus sp. JA-3-3Ab 3897984 YP_475208.1 CDS CYA_1792 NC_007775.1 1793011 1794354 R identified by similarity to PIR:AH2006; hypothetical protein complement(1793011..1794354) Synechococcus sp. JA-3-3Ab 3897985 YP_475209.1 CDS CYA_1793 NC_007775.1 1794531 1795040 R hypothetical protein complement(1794531..1795040) Synechococcus sp. JA-3-3Ab 3897986 YP_475210.1 CDS CYA_1794 NC_007775.1 1795065 1795619 R hypothetical protein complement(1795065..1795619) Synechococcus sp. JA-3-3Ab 3897987 YP_475211.1 CDS prc-1 NC_007775.1 1795708 1797021 R identified by similarity to SP:Q55669; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; C-terminal processing peptidase complement(1795708..1797021) Synechococcus sp. JA-3-3Ab 3897988 YP_475212.1 CDS petB NC_007775.1 1797227 1797874 D electron transport protein; cytochrome b6 1797227..1797874 Synechococcus sp. JA-3-3Ab 3897989 YP_475213.1 CDS petD NC_007775.1 1797970 1798464 D PetD, with cytochrome b6, cytochrome F, and the Rieske protein, makes up the large subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I; cytochrome b6-f complex subunit IV 1797970..1798464 Synechococcus sp. JA-3-3Ab 3897990 YP_475214.1 CDS leuB NC_007775.1 1798607 1799752 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1798607..1799752 Synechococcus sp. JA-3-3Ab 3897991 YP_475215.1 CDS ntcA NC_007775.1 1799868 1800542 R identified by similarity to SP:Q05061; match to protein family HMM PF00027; match to protein family HMM PF00325; nitrogen-responsive regulatory protein complement(1799868..1800542) Synechococcus sp. JA-3-3Ab 3897992 YP_475216.1 CDS CYA_1800 NC_007775.1 1800809 1802608 D identified by match to protein family HMM PF00595; match to protein family HMM PF05299; M61 family peptidase 1800809..1802608 Synechococcus sp. JA-3-3Ab 3897993 YP_475217.1 CDS CYA_1801 NC_007775.1 1802690 1803814 D hypothetical protein 1802690..1803814 Synechococcus sp. JA-3-3Ab 3897994 YP_475218.1 CDS CYA_1802 NC_007775.1 1803822 1804709 R hypothetical protein complement(1803822..1804709) Synechococcus sp. JA-3-3Ab 3897995 YP_475219.1 CDS upp NC_007775.1 1805069 1805722 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1805069..1805722 Synechococcus sp. JA-3-3Ab 3897996 YP_475220.1 CDS CYA_1804 NC_007775.1 1806029 1806937 D catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 1806029..1806937 Synechococcus sp. JA-3-3Ab 3897997 YP_475221.1 CDS CYA_1805 NC_007775.1 1807062 1807631 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1807062..1807631 Synechococcus sp. JA-3-3Ab 3897998 YP_475222.1 CDS CYA_1806 NC_007775.1 1807825 1808778 D identified by match to protein family HMM PF00226; DnaJ domain-containing protein 1807825..1808778 Synechococcus sp. JA-3-3Ab 3897999 YP_475223.1 CDS CYA_1807 NC_007775.1 1808788 1809849 R hypothetical protein complement(1808788..1809849) Synechococcus sp. JA-3-3Ab 3898000 YP_475224.1 CDS CYA_1808 NC_007775.1 1810185 1810472 D identified by similarity to PIR:AB1857; hypothetical protein 1810185..1810472 Synechococcus sp. JA-3-3Ab 3898001 YP_475225.1 CDS CYA_1809 NC_007775.1 1810515 1811885 D identified by match to protein family HMM PF04459; hypothetical protein 1810515..1811885 Synechococcus sp. JA-3-3Ab 3898002 YP_475226.1 CDS CYA_1810 NC_007775.1 1811890 1814445 D identified by match to protein family HMM PF03699; hypothetical protein 1811890..1814445 Synechococcus sp. JA-3-3Ab 3898566 YP_475227.1 CDS psbA-3 NC_007775.1 1814550 1815614 D identified by match to protein family HMM PF00124; match to protein family HMM TIGR01151; photosystem II protein D1 1814550..1815614 Synechococcus sp. JA-3-3Ab 3898567 YP_475228.1 CDS ruvB NC_007775.1 1815754 1816890 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1815754..1816890 Synechococcus sp. JA-3-3Ab 3898568 YP_475229.1 CDS CYA_1814 NC_007775.1 1817211 1819907 R identified by match to protein family HMM PF00427; match to protein family HMM PF00502; phycobilisome 120 kDa linker polypeptide, core complement(1817211..1819907) Synechococcus sp. JA-3-3Ab 3898570 YP_475230.1 CDS CYA_1816 NC_007775.1 1820137 1822299 D identified by match to protein family HMM PF07719; hypothetical protein 1820137..1822299 Synechococcus sp. JA-3-3Ab 3898571 YP_475231.1 CDS CYA_1817 NC_007775.1 1822540 1823742 R identified by match to protein family HMM PF07690; major facilitator transporter complement(1822540..1823742) Synechococcus sp. JA-3-3Ab 3898573 YP_475232.1 CDS CYA_1818 NC_007775.1 1823895 1824095 R identified by match to protein family HMM PF06988; NifT/FixU family protein complement(1823895..1824095) Synechococcus sp. JA-3-3Ab 3898574 YP_475233.1 CDS nifZ NC_007775.1 1824092 1824355 R identified by match to protein family HMM PF04319; NifZ protein complement(1824092..1824355) Synechococcus sp. JA-3-3Ab 3898575 YP_475234.1 CDS aksA NC_007775.1 1824491 1825678 R in Methanococcus jannaschii this protein catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate; functions in alphaketosuberate synthesis which is a precursor in coenzyme B and biotin synthesis; trans-homoaconitate synthase complement(1824491..1825678) Synechococcus sp. JA-3-3Ab 3898576 YP_475235.1 CDS CYA_1822 NC_007775.1 1825837 1825938 D hypothetical protein 1825837..1825938 Synechococcus sp. JA-3-3Ab 3898577 YP_475236.1 CDS nifK NC_007775.1 1825927 1827462 R identified by similarity to SP:Q55030; match to protein family HMM PF00148; match to protein family HMM TIGR01286; nitrogenase molybdenum-iron protein subunit beta complement(1825927..1827462) Synechococcus sp. JA-3-3Ab 3898578 YP_475237.1 CDS nifD NC_007775.1 1827528 1828991 R identified by similarity to SP:Q00239; match to protein family HMM PF00148; match to protein family HMM TIGR01282; match to protein family HMM TIGR01862; nitrogenase molybdenum-iron protein subunit alpha complement(1827528..1828991) Synechococcus sp. JA-3-3Ab 3898579 YP_475238.1 CDS nifH NC_007775.1 1829088 1829966 R identified by match to protein family HMM PF00142; match to protein family HMM TIGR01287; nitrogenase iron protein complement(1829088..1829966) Synechococcus sp. JA-3-3Ab 3898580 YP_475239.1 CDS nifU NC_007775.1 1830244 1831182 R identified by match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324; match to protein family HMM TIGR02000; Fe-S cluster assembly protein NifU complement(1830244..1831182) Synechococcus sp. JA-3-3Ab 3898581 YP_475240.1 CDS nifS NC_007775.1 1831239 1832429 R identified by similarity to SP:P05341; match to protein family HMM PF00266; match to protein family HMM PF01212; cysteine desulfurase complement(1831239..1832429) Synechococcus sp. JA-3-3Ab 3898582 YP_475241.1 CDS CYA_1827 NC_007775.1 1832478 1832771 R identified by similarity to SP:P46050; match to protein family HMM PF00037; ferredoxin, 4Fe-4S complement(1832478..1832771) Synechococcus sp. JA-3-3Ab 3898583 YP_475242.1 CDS nifB NC_007775.1 1832797 1834233 R identified by similarity to SP:P20627; match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290; nitrogenase cofactor biosynthesis protein NifB complement(1832797..1834233) Synechococcus sp. JA-3-3Ab 3898584 YP_475243.1 CDS CYA_1829 NC_007775.1 1834386 1834505 R hypothetical protein complement(1834386..1834505) Synechococcus sp. JA-3-3Ab 3897926 YP_475244.1 CDS CYA_1830 NC_007775.1 1835005 1835298 D hypothetical protein 1835005..1835298 Synechococcus sp. JA-3-3Ab 3897927 YP_475245.1 CDS dpsA NC_007775.1 1835353 1835898 D identified by similarity to GB:BAB75507.1; match to protein family HMM PF00210; nutrient-stress induced DNA binding protein 1835353..1835898 Synechococcus sp. JA-3-3Ab 3897928 YP_475246.1 CDS CYA_1832 NC_007775.1 1835941 1836165 D hypothetical protein 1835941..1836165 Synechococcus sp. JA-3-3Ab 3897929 YP_475247.1 CDS CYA_1833 NC_007775.1 1836169 1836528 D identified by match to protein family HMM PF06967; Mo-dependent nitrogenase family protein 1836169..1836528 Synechococcus sp. JA-3-3Ab 3897930 YP_475248.1 CDS nifE NC_007775.1 1836519 1837925 D identified by similarity to SP:P55673; match to protein family HMM PF00148; match to protein family HMM TIGR01283; nitrogenase MoFe cofactor biosynthesis protein NifE 1836519..1837925 Synechococcus sp. JA-3-3Ab 3897931 YP_475249.1 CDS nifN NC_007775.1 1837913 1839250 D functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifN 1837913..1839250 Synechococcus sp. JA-3-3Ab 3897932 YP_475250.1 CDS nifX NC_007775.1 1839325 1839744 D identified by similarity to SP:P19078; match to protein family HMM PF02579; match to protein family HMM TIGR02663; nitrogenase cofactor biosynthesis protein NifX 1839325..1839744 Synechococcus sp. JA-3-3Ab 3897933 YP_475251.1 CDS CYA_1837 NC_007775.1 1839747 1840202 D identified by similarity to GB:AAC35200.1; match to protein family HMM PF03270; hypothetical protein 1839747..1840202 Synechococcus sp. JA-3-3Ab 3897934 YP_475252.1 CDS CYA_1838 NC_007775.1 1840269 1840532 D identified by match to protein family HMM PF05082; hypothetical protein 1840269..1840532 Synechococcus sp. JA-3-3Ab 3897935 YP_475253.1 CDS nifW NC_007775.1 1840529 1840894 D associates with NifD and may protect the nitrogenase Fe-Mo protein from oxidative damage; nitrogenase stabilizing/protective protein 1840529..1840894 Synechococcus sp. JA-3-3Ab 3897936 YP_475254.1 CDS CYA_1840 NC_007775.1 1840937 1841236 D identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008; ferredoxin, 2Fe-2S 1840937..1841236 Synechococcus sp. JA-3-3Ab 3897937 YP_475255.1 CDS CYA_1841 NC_007775.1 1841265 1841642 D identified by match to protein family HMM PF04023; FeoA domain-containing protein 1841265..1841642 Synechococcus sp. JA-3-3Ab 3897938 YP_475256.1 CDS CYA_1842 NC_007775.1 1841737 1841994 D hypothetical protein 1841737..1841994 Synechococcus sp. JA-3-3Ab 3897939 YP_475257.1 CDS CYA_1843 NC_007775.1 1842337 1843989 D identified by match to protein family HMM PF00037; match to protein family HMM PF01381; transcriptional regulator PatB 1842337..1843989 Synechococcus sp. JA-3-3Ab 3897940 YP_475258.1 CDS CYA_1844 NC_007775.1 1844018 1844227 R identified by match to protein family HMM PF03459; match to protein family HMM TIGR00638; molybdenum-pterin-binding domain-containing protein complement(1844018..1844227) Synechococcus sp. JA-3-3Ab 3897941 YP_475259.1 CDS modA NC_007775.1 1844477 1845244 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdate ABC transporter molybdate-binding protein 1844477..1845244 Synechococcus sp. JA-3-3Ab 3897942 YP_475260.1 CDS modB NC_007775.1 1845268 1847055 D identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR02141; molybdate ABC transporter permease 1845268..1847055 Synechococcus sp. JA-3-3Ab 3897943 YP_475261.1 CDS cbiG/cobJ-2 NC_007775.1 1847074 1848795 R identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466; cbiG protein/precorrin-3B C17-methyltransferase complement(1847074..1848795) Synechococcus sp. JA-3-3Ab 3897944 YP_475262.1 CDS CYA_1848 NC_007775.1 1849177 1850049 D hypothetical protein 1849177..1850049 Synechococcus sp. JA-3-3Ab 3899902 YP_475263.1 CDS psbA-4 NC_007775.1 1850154 1851218 D identified by match to protein family HMM PF00124; match to protein family HMM TIGR01151; photosystem II protein D1 1850154..1851218 Synechococcus sp. JA-3-3Ab 3899903 YP_475264.1 CDS ruvB NC_007775.1 1851392 1852504 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1851392..1852504 Synechococcus sp. JA-3-3Ab 3899904 YP_475265.1 CDS CYA_1851 NC_007775.1 1852542 1855241 R identified by match to protein family HMM PF00427; match to protein family HMM PF00502; phycobilisome 120 kDa linker polypeptide, core complement(1852542..1855241) Synechococcus sp. JA-3-3Ab 3899905 YP_475266.1 CDS CYA_1852 NC_007775.1 1855686 1857611 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1855686..1857611 Synechococcus sp. JA-3-3Ab 3899906 YP_475267.1 CDS CYA_1854 NC_007775.1 1857739 1859988 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; hypothetical protein complement(1857739..1859988) Synechococcus sp. JA-3-3Ab 3899908 YP_475268.1 CDS CYA_1856 NC_007775.1 1860049 1860273 D hypothetical protein 1860049..1860273 Synechococcus sp. JA-3-3Ab 3899909 YP_475269.1 CDS CYA_1855 NC_007775.1 1860270 1861091 R identified by match to protein family HMM PF01497; metal chelate ABC transporter metal chelate-binding protein complement(1860270..1861091) Synechococcus sp. JA-3-3Ab 3899910 YP_475270.1 CDS crtH NC_007775.1 1861251 1862810 R identified by similarity to GB:AAM71888.1; match to protein family HMM PF01266; match to protein family HMM TIGR02730; carotenoid isomerase complement(1861251..1862810) Synechococcus sp. JA-3-3Ab 3899911 YP_475271.1 CDS potB NC_007775.1 1862898 1863845 R identified by similarity to SP:P23860; match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease complement(1862898..1863845) Synechococcus sp. JA-3-3Ab 3899912 YP_475272.1 CDS potA NC_007775.1 1863839 1864972 R identified by similarity to SP:P23858; match to protein family HMM PF00005; spermidine/putrescine ABC transporter ATP-binding protein complement(1863839..1864972) Synechococcus sp. JA-3-3Ab 3899913 YP_475273.1 CDS CYA_1860 NC_007775.1 1865040 1865843 R identified by similarity to GB:BAC91582.1; hypothetical protein complement(1865040..1865843) Synechococcus sp. JA-3-3Ab 3899914 YP_475274.1 CDS CYA_1861 NC_007775.1 1865824 1865940 D hypothetical protein 1865824..1865940 Synechococcus sp. JA-3-3Ab 3899915 YP_475275.1 CDS frr NC_007775.1 1866057 1866605 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1866057..1866605 Synechococcus sp. JA-3-3Ab 3899916 YP_475276.1 CDS CYA_1863 NC_007775.1 1866701 1869412 D identified by match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF01743; match to protein family HMM PF02272; polyA polymerase family protein 1866701..1869412 Synechococcus sp. JA-3-3Ab 3899917 YP_475277.1 CDS CYA_1864 NC_007775.1 1869502 1870437 D identified by match to protein family HMM PF01435; M48B family peptidase 1869502..1870437 Synechococcus sp. JA-3-3Ab 3899918 YP_475278.1 CDS aroB NC_007775.1 1871350 1872561 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 1871350..1872561 Synechococcus sp. JA-3-3Ab 3899920 YP_475279.1 CDS asd NC_007775.1 1872540 1873547 D identified by similarity to SP:Q04797; match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase 1872540..1873547 Synechococcus sp. JA-3-3Ab 3899845 YP_475280.1 CDS CYA_1868 NC_007775.1 1873582 1873776 D hypothetical protein 1873582..1873776 Synechococcus sp. JA-3-3Ab 3899846 YP_475281.1 CDS CYA_1869 NC_007775.1 1874380 1875156 D identified by match to protein family HMM PF02535; zinc/iron ABC transporter permease 1874380..1875156 Synechococcus sp. JA-3-3Ab 3899847 YP_475282.1 CDS est NC_007775.1 1875186 1875968 D identified by similarity to SP:Q06174; carboxylesterase 1875186..1875968 Synechococcus sp. JA-3-3Ab 3899848 YP_475283.1 CDS CYA_1870 NC_007775.1 1875934 1876707 R identified by similarity to GB:BAC89517.1; hypothetical protein complement(1875934..1876707) Synechococcus sp. JA-3-3Ab 3899849 YP_475284.1 CDS CYA_1872 NC_007775.1 1876803 1877120 D hypothetical protein 1876803..1877120 Synechococcus sp. JA-3-3Ab 3899850 YP_475285.1 CDS CYA_1873 NC_007775.1 1877125 1877265 D hypothetical protein 1877125..1877265 Synechococcus sp. JA-3-3Ab 3899851 YP_475286.1 CDS murB NC_007775.1 1878066 1879004 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(1878066..1879004) Synechococcus sp. JA-3-3Ab 3899853 YP_475287.1 CDS murC NC_007775.1 1879001 1880533 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(1879001..1880533) Synechococcus sp. JA-3-3Ab 3899854 YP_475288.1 CDS CYA_1877 NC_007775.1 1880798 1881943 D identified by match to protein family HMM PF00529; membrane fusion protein family protein 1880798..1881943 Synechococcus sp. JA-3-3Ab 3899855 YP_475289.1 CDS devC NC_007775.1 1881953 1883137 D identified by match to protein family HMM PF02687; match to protein family HMM TIGR01185; glycolipid ABC exporter (DevE) family permease 1881953..1883137 Synechococcus sp. JA-3-3Ab 3899856 YP_475290.1 CDS devA NC_007775.1 1883316 1884053 D identified by similarity to GB:CAA05977.1; match to protein family HMM PF00005; glycolipid ABC exporter (DevE) family ATP-binding protein 1883316..1884053 Synechococcus sp. JA-3-3Ab 3899857 YP_475291.1 CDS CYA_1879 NC_007775.1 1884050 1885003 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase family protein complement(1884050..1885003) Synechococcus sp. JA-3-3Ab 3899858 YP_475292.1 CDS alaS NC_007775.1 1885069 1887720 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1885069..1887720) Synechococcus sp. JA-3-3Ab 3899859 YP_475293.1 CDS CYA_1882 NC_007775.1 1888007 1889680 D identified by match to protein family HMM PF00069; match to protein family HMM PF00805; serine/threonine protein kinase 1888007..1889680 Synechococcus sp. JA-3-3Ab 3899860 YP_475294.1 CDS CYA_1883 NC_007775.1 1889699 1890190 R hypothetical protein complement(1889699..1890190) Synechococcus sp. JA-3-3Ab 3899861 YP_475295.1 CDS hisC NC_007775.1 1890397 1891458 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1890397..1891458 Synechococcus sp. JA-3-3Ab 3899787 YP_475296.1 CDS CYA_1886 NC_007775.1 1891482 1895570 R hypothetical protein complement(1891482..1895570) Synechococcus sp. JA-3-3Ab 3899788 YP_475297.1 CDS CYA_1887 NC_007775.1 1895866 1895994 R hypothetical protein complement(1895866..1895994) Synechococcus sp. JA-3-3Ab 3899789 YP_475298.1 CDS CYA_1888 NC_007775.1 1896114 1896587 D identified by similarity to SP:Q06823; match to protein family HMM PF00011; small heat shock protein (HSP20) family protein 1896114..1896587 Synechococcus sp. JA-3-3Ab 3899790 YP_475299.1 CDS CYA_1889 NC_007775.1 1896634 1897416 R identified by similarity to GB:BAC90863.1; match to protein family HMM PF01887; hypothetical protein complement(1896634..1897416) Synechococcus sp. JA-3-3Ab 3899791 YP_475300.1 CDS CYA_1890 NC_007775.1 1897469 1898749 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase complement(1897469..1898749) Synechococcus sp. JA-3-3Ab 3899792 YP_475301.1 CDS CYA_1891 NC_007775.1 1898604 1899197 R identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase complement(1898604..1899197) Synechococcus sp. JA-3-3Ab 3899793 YP_475302.1 CDS CYA_1892 NC_007775.1 1899291 1900046 R identified by similarity to GB:AAD30120.2; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator RpaA complement(1899291..1900046) Synechococcus sp. JA-3-3Ab 3899794 YP_475303.1 CDS CYA_1893 NC_007775.1 1900194 1901972 R identified by match to protein family HMM PF00005; peptide/nickel/opine uptake ABC transporter ATP-binding protein complement(1900194..1901972) Synechococcus sp. JA-3-3Ab 3899795 YP_475304.1 CDS CYA_1894 NC_007775.1 1902123 1903463 R hypothetical protein complement(1902123..1903463) Synechococcus sp. JA-3-3Ab 3899796 YP_475305.1 CDS CYA_1895 NC_007775.1 1903557 1905149 R identified by match to protein family HMM PF01476; match to protein family HMM PF01551; M23B family peptidase complement(1903557..1905149) Synechococcus sp. JA-3-3Ab 3899797 YP_475306.1 CDS cysS NC_007775.1 1905549 1907069 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1905549..1907069 Synechococcus sp. JA-3-3Ab 3899798 YP_475307.1 CDS CYA_1897 NC_007775.1 1907093 1908622 R identified by match to protein family HMM PF00450; S10 family peptidase complement(1907093..1908622) Synechococcus sp. JA-3-3Ab 3899799 YP_475308.1 CDS CYA_1898 NC_007775.1 1908707 1909300 R identified by similarity to GB:BAC89656.1; hypothetical protein complement(1908707..1909300) Synechococcus sp. JA-3-3Ab 3899800 YP_475309.1 CDS thiL NC_007775.1 1909497 1910519 R catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase complement(1909497..1910519) Synechococcus sp. JA-3-3Ab 3899801 YP_475310.1 CDS kaiC NC_007775.1 1910603 1912207 R acts as a promotor non-specific transcription repressor; circadian clock protein KaiC complement(1910603..1912207) Synechococcus sp. JA-3-3Ab 3899802 YP_475311.1 CDS kaiB NC_007775.1 1912233 1912535 R Decreases the phosphorylation of KaiC, a component of the main circadian regulator in cyanobacteria; circadian clock protein KaiB complement(1912233..1912535) Synechococcus sp. JA-3-3Ab 3899803 YP_475312.1 CDS kaiA NC_007775.1 1912539 1913453 R identified by match to protein family HMM PF07688; circadian clock protein KaiA complement(1912539..1913453) Synechococcus sp. JA-3-3Ab 3899804 YP_475313.1 CDS CYA_1903 NC_007775.1 1913692 1914624 D identified by match to protein family HMM PF01156; inosine-uridine preferring nucleoside hydrolase family protein 1913692..1914624 Synechococcus sp. JA-3-3Ab 3899805 YP_475314.1 CDS pgsA NC_007775.1 1914936 1915523 D identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1914936..1915523 Synechococcus sp. JA-3-3Ab 3899806 YP_475315.1 CDS ruvC NC_007775.1 1915477 1916058 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1915477..1916058 Synechococcus sp. JA-3-3Ab 3899768 YP_475316.1 CDS CYA_1906 NC_007775.1 1916125 1916772 D identified by match to protein family HMM PF02190; ATP-dependent protease La 1916125..1916772 Synechococcus sp. JA-3-3Ab 3899769 YP_475317.1 CDS CYA_1907 NC_007775.1 1916902 1917633 D identified by similarity to PIR:AB2626; hypothetical protein 1916902..1917633 Synechococcus sp. JA-3-3Ab 3899770 YP_475318.1 CDS CYA_1908 NC_007775.1 1917679 1918737 D hypothetical protein 1917679..1918737 Synechococcus sp. JA-3-3Ab 3899771 YP_475319.1 CDS CYA_1909 NC_007775.1 1918914 1920101 D identified by similarity to PIR:S76763; match to protein family HMM PF04339; hypothetical protein 1918914..1920101 Synechococcus sp. JA-3-3Ab 3899772 YP_475320.1 CDS CYA_1910 NC_007775.1 1920107 1920781 R identified by match to protein family HMM PF00072; response regulator complement(1920107..1920781) Synechococcus sp. JA-3-3Ab 3899773 YP_475321.1 CDS CYA_1911 NC_007775.1 1920942 1921688 D identified by match to protein family HMM PF01694; S54 family peptidase 1920942..1921688 Synechococcus sp. JA-3-3Ab 3899774 YP_475322.1 CDS CYA_1912 NC_007775.1 1921739 1922380 D identified by similarity to GB:AAQ63052.1; match to protein family HMM PF05685; hypothetical protein 1921739..1922380 Synechococcus sp. JA-3-3Ab 3899775 YP_475323.1 CDS CYA_1913 NC_007775.1 1922540 1923016 R identified by match to protein family HMM PF01797; ISSoc3, orfA transposase complement(1922540..1923016) Synechococcus sp. JA-3-3Ab 3899776 YP_475324.1 CDS CYA_1915 NC_007775.1 1924290 1925897 R Shuttles electrons from NAD(P)H, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NAD(P)H-quinone oxidoreductase subunit 4 complement(1924290..1925897) Synechococcus sp. JA-3-3Ab 3899778 YP_475325.1 CDS CYA_1916 NC_007775.1 1926267 1927301 D identified by match to protein family HMM PF00962; adenosine deaminase 1926267..1927301 Synechococcus sp. JA-3-3Ab 3899779 YP_475326.1 CDS ybbB NC_007775.1 1927378 1928427 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(1927378..1928427) Synechococcus sp. JA-3-3Ab 3899780 YP_475327.1 CDS CYA_1918 NC_007775.1 1928619 1929314 D identified by match to protein family HMM PF00857; isochorismatase family protein 1928619..1929314 Synechococcus sp. JA-3-3Ab 3899781 YP_475328.1 CDS CYA_1919 NC_007775.1 1929459 1930910 D identified by match to protein family HMM PF00005; carbohydrate ABC transporter ATP-binding protein 1929459..1930910 Synechococcus sp. JA-3-3Ab 3899782 YP_475329.1 CDS CYA_1920 NC_007775.1 1930962 1931726 R identified by match to protein family HMM PF00005; urea ABC transporter ATP-binding protein complement(1930962..1931726) Synechococcus sp. JA-3-3Ab 3899783 YP_475330.1 CDS CYA_1921 NC_007775.1 1931761 1932528 R identified by similarity to GB:CAB70951.1; match to protein family HMM PF00005; urea ABC transporter ATP-binding protein complement(1931761..1932528) Synechococcus sp. JA-3-3Ab 3899784 YP_475331.1 CDS CYA_1922 NC_007775.1 1932699 1933907 R identified by similarity to GB:CAB70950.1; match to protein family HMM PF02653; urea ABC transporter permease complement(1932699..1933907) Synechococcus sp. JA-3-3Ab 3899785 YP_475332.1 CDS CYA_1923 NC_007775.1 1933911 1935068 R identified by similarity to GB:CAB70949.1; match to protein family HMM PF02653; urea ABC transporter permease complement(1933911..1935068) Synechococcus sp. JA-3-3Ab 3899786 YP_475333.1 CDS CYA_1924 NC_007775.1 1935173 1936447 R identified by similarity to GB:CAB70948.1; match to protein family HMM PF01094; match to protein family HMM TIGR01409; urea ABC transporter urea-binding protein complement(1935173..1936447) Synechococcus sp. JA-3-3Ab 3899710 YP_475334.1 CDS CYA_1925 NC_007775.1 1936845 1938779 D identified by match to protein family HMM PF00326; S9C family peptidase 1936845..1938779 Synechococcus sp. JA-3-3Ab 3899711 YP_475335.1 CDS CYA_1926 NC_007775.1 1938847 1940973 D identified by match to protein family HMM PF01464; match to protein family HMM PF07719; Slt family transglycosylase 1938847..1940973 Synechococcus sp. JA-3-3Ab 3899712 YP_475336.1 CDS CYA_1927 NC_007775.1 1941213 1941491 R hypothetical protein complement(1941213..1941491) Synechococcus sp. JA-3-3Ab 3899713 YP_475337.1 CDS CYA_1929 NC_007775.1 1941566 1942258 D identified by match to protein family HMM PF00226; DnaJ domain-containing protein 1941566..1942258 Synechococcus sp. JA-3-3Ab 3899714 YP_475338.1 CDS CYA_1928 NC_007775.1 1942255 1943112 R identified by match to protein family HMM PF01972; S49 family peptidase complement(1942255..1943112) Synechococcus sp. JA-3-3Ab 3899715 YP_475339.1 CDS CYA_1930 NC_007775.1 1943183 1944007 R hypothetical protein complement(1943183..1944007) Synechococcus sp. JA-3-3Ab 3899716 YP_475340.1 CDS CYA_1931 NC_007775.1 1944066 1945040 R identified by similarity to GB:AAF78203.1; match to protein family HMM PF00487; fatty acid desaturase complement(1944066..1945040) Synechococcus sp. JA-3-3Ab 3899717 YP_475341.1 CDS psaK NC_007775.1 1945381 1945626 D photosystem I reaction center protein PsaK 1945381..1945626 Synechococcus sp. JA-3-3Ab 3899718 YP_475342.1 CDS psbK NC_007775.1 1945752 1945889 D may be involved in binding plastoquinone and maintaining PSII dimers; photosystem II reaction center protein K 1945752..1945889 Synechococcus sp. JA-3-3Ab 3899719 YP_475343.1 CDS CYA_1934 NC_007775.1 1946054 1946593 R hypothetical protein complement(1946054..1946593) Synechococcus sp. JA-3-3Ab 3899720 YP_475344.1 CDS CYA_1935 NC_007775.1 1946705 1947118 R hypothetical protein complement(1946705..1947118) Synechococcus sp. JA-3-3Ab 3899721 YP_475345.1 CDS chlI NC_007775.1 1947458 1948516 D identified by match to protein family HMM PF01078; match to protein family HMM TIGR02030; magnesium chelatase, ATPase subunit I 1947458..1948516 Synechococcus sp. JA-3-3Ab 3899722 YP_475346.1 CDS CYA_1937 NC_007775.1 1948622 1949239 D identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 1948622..1949239 Synechococcus sp. JA-3-3Ab 3899723 YP_475347.1 CDS CYA_1938 NC_007775.1 1949094 1950374 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 1949094..1950374 Synechococcus sp. JA-3-3Ab 3899724 YP_475348.1 CDS CYA_1939 NC_007775.1 1950384 1951052 R hypothetical protein complement(1950384..1951052) Synechococcus sp. JA-3-3Ab 3899725 YP_475349.1 CDS CYA_1940 NC_007775.1 1951110 1951634 R identified by similarity to SP:P43270; match to protein family HMM PF00565; thermonuclease complement(1951110..1951634) Synechococcus sp. JA-3-3Ab 3899726 YP_475350.1 CDS CYA_1941 NC_007775.1 1951778 1952932 R identified by similarity to GB:BAC09914.1; match to protein family HMM PF01837; hypothetical protein complement(1951778..1952932) Synechococcus sp. JA-3-3Ab 3899727 YP_475351.1 CDS icc NC_007775.1 1953067 1953891 R identified by similarity to SP:P36650; similarity to PIR:E64065; match to protein family HMM PF00149; 3',5'-cyclic-nucleotide phosphodiesterase complement(1953067..1953891) Synechococcus sp. JA-3-3Ab 3899728 YP_475352.1 CDS psbP NC_007775.1 1954079 1954609 R photosystem II oxygen evolving complex protein PsbP complement(1954079..1954609) Synechococcus sp. JA-3-3Ab 3899729 YP_475353.1 CDS CYA_1944 NC_007775.1 1954758 1957040 R identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; RelA/SpoT family protein complement(1954758..1957040) Synechococcus sp. JA-3-3Ab 3899635 YP_475354.1 CDS rbgA NC_007775.1 1957239 1958108 R essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase complement(1957239..1958108) Synechococcus sp. JA-3-3Ab 3899636 YP_475355.1 CDS CYA_1946 NC_007775.1 1958288 1958773 D identified by match to protein family HMM PF00111; iron-sulfur cluster-binding protein 1958288..1958773 Synechococcus sp. JA-3-3Ab 3899637 YP_475356.1 CDS CYA_1947 NC_007775.1 1958780 1960201 D identified by match to protein family HMM PF00370; carbohydrate kinase 1958780..1960201 Synechococcus sp. JA-3-3Ab 3899638 YP_475357.1 CDS CYA_1948 NC_007775.1 1960584 1962242 R identified by match to protein family HMM PF03109; hypothetical protein complement(1960584..1962242) Synechococcus sp. JA-3-3Ab 3899639 YP_475358.1 CDS CYA_1949 NC_007775.1 1962280 1962861 R identified by similarity to SP:P23480; match to protein family HMM PF00578; AhpC/TSA family protein complement(1962280..1962861) Synechococcus sp. JA-3-3Ab 3899640 YP_475359.1 CDS CYA_1950 NC_007775.1 1962899 1963336 R hypothetical protein complement(1962899..1963336) Synechococcus sp. JA-3-3Ab 3899641 YP_475360.1 CDS CYA_1951 NC_007775.1 1963340 1963903 R lipoprotein complement(1963340..1963903) Synechococcus sp. JA-3-3Ab 3899642 YP_475361.1 CDS CYA_1953 NC_007775.1 1964218 1965027 R identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050; RNA methyltransferase complement(1964218..1965027) Synechococcus sp. JA-3-3Ab 3899644 YP_475362.1 CDS CYA_1954 NC_007775.1 1965094 1965669 D lipoprotein 1965094..1965669 Synechococcus sp. JA-3-3Ab 3899645 YP_475363.1 CDS lpxC NC_007775.1 1965676 1966587 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1965676..1966587 Synechococcus sp. JA-3-3Ab 3899646 YP_475364.1 CDS CYA_1956 NC_007775.1 1966855 1968081 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc5, transposase 1966855..1968081 Synechococcus sp. JA-3-3Ab 3899647 YP_475365.1 CDS fabZ NC_007775.1 1968161 1968661 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1968161..1968661 Synechococcus sp. JA-3-3Ab 3899648 YP_475366.1 CDS CYA_1958 NC_007775.1 1968830 1969306 R identified by match to protein family HMM PF01797; ISSoc3, orfA transposase complement(1968830..1969306) Synechococcus sp. JA-3-3Ab 3899649 YP_475367.1 CDS CYA_1959 NC_007775.1 1969262 1970533 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc3, orfB transposase 1969262..1970533 Synechococcus sp. JA-3-3Ab 3899650 YP_475368.1 CDS lpxA NC_007775.1 1970741 1971652 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1970741..1971652 Synechococcus sp. JA-3-3Ab 3899651 YP_475369.1 CDS lpxB NC_007775.1 1971649 1972839 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1971649..1972839 Synechococcus sp. JA-3-3Ab 3899652 YP_475370.1 CDS CYA_1962 NC_007775.1 1972842 1973888 R identified by match to protein family HMM PF07755; hypothetical protein complement(1972842..1973888) Synechococcus sp. JA-3-3Ab 3899596 YP_475371.1 CDS CYA_1963 NC_007775.1 1973893 1974942 R identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing enzyme family protein complement(1973893..1974942) Synechococcus sp. JA-3-3Ab 3899597 YP_475372.1 CDS CYA_1964 NC_007775.1 1975121 1976758 D catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 1975121..1976758 Synechococcus sp. JA-3-3Ab 3899598 YP_475373.1 CDS CYA_1965 NC_007775.1 1976915 1978981 D identified by match to protein family HMM PF00437; match to protein family HMM PF05157; type IV pilus assembly protein PilB 1976915..1978981 Synechococcus sp. JA-3-3Ab 3899599 YP_475374.1 CDS pilT-1 NC_007775.1 1979154 1980284 D identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein 1979154..1980284 Synechococcus sp. JA-3-3Ab 3899600 YP_475375.1 CDS pilC NC_007775.1 1980445 1981671 D identified by match to protein family HMM PF00482; type IV pilus assembly protein PilC 1980445..1981671 Synechococcus sp. JA-3-3Ab 3899601 YP_475376.1 CDS CYA_1968 NC_007775.1 1981723 1986432 D identified by match to protein family HMM PF01835; match to protein family HMM PF07703; alpha-2-macroglobulin family protein 1981723..1986432 Synechococcus sp. JA-3-3Ab 3899602 YP_475377.1 CDS CYA_1969 NC_007775.1 1986510 1988141 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 1986510..1988141 Synechococcus sp. JA-3-3Ab 3899603 YP_475378.1 CDS CYA_1971 NC_007775.1 1988278 1989189 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 1988278..1989189 Synechococcus sp. JA-3-3Ab 3899604 YP_475379.1 CDS CYA_1970 NC_007775.1 1989186 1989647 R hypothetical protein complement(1989186..1989647) Synechococcus sp. JA-3-3Ab 3899605 YP_475380.1 CDS CYA_1973 NC_007775.1 1989936 1992536 R identified by match to protein family HMM PF03065; glycosyl hydrolase family protein complement(1989936..1992536) Synechococcus sp. JA-3-3Ab 3899607 YP_475381.1 CDS folD NC_007775.1 1992867 1993736 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1992867..1993736) Synechococcus sp. JA-3-3Ab 3899608 YP_475382.1 CDS xseB NC_007775.1 1993838 1994074 R identified by similarity to SP:P22938; exodeoxyribonuclease VII small subunit complement(1993838..1994074) Synechococcus sp. JA-3-3Ab 3899609 YP_475383.1 CDS xseA NC_007775.1 1994055 1995290 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1994055..1995290) Synechococcus sp. JA-3-3Ab 3899610 YP_475384.1 CDS CYA_1977 NC_007775.1 1995330 1996559 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc7, transposase 1995330..1996559 Synechococcus sp. JA-3-3Ab 3899611 YP_475385.1 CDS CYA_1978 NC_007775.1 1996733 1997869 D identified by match to protein family HMM PF01594; hypothetical protein 1996733..1997869 Synechococcus sp. JA-3-3Ab 3899612 YP_475386.1 CDS CYA_1979 NC_007775.1 1997989 1998363 D identified by similarity to GB:BAC91746.1; match to protein family HMM PF06868; hypothetical protein 1997989..1998363 Synechococcus sp. JA-3-3Ab 3899613 YP_475387.1 CDS CYA_1980 NC_007775.1 1998386 1999501 D identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 1998386..1999501 Synechococcus sp. JA-3-3Ab 3899614 YP_475388.1 CDS CYA_1981 NC_007775.1 1999601 2001976 D identified by match to protein family HMM PF03894; phosphoketolase 1999601..2001976 Synechococcus sp. JA-3-3Ab 3899558 YP_475389.1 CDS mraY NC_007775.1 2002148 2003170 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 2002148..2003170 Synechococcus sp. JA-3-3Ab 3899559 YP_475390.1 CDS CYA_1984 NC_007775.1 2003653 2004384 R identified by similarity to PIR:AH2164; hypothetical protein complement(2003653..2004384) Synechococcus sp. JA-3-3Ab 3899561 YP_475391.1 CDS CYA_1985 NC_007775.1 2004448 2005065 R identified by similarity to SP:Q51521; pyridoxamine 5'-phosphate oxidase family protein complement(2004448..2005065) Synechococcus sp. JA-3-3Ab 3899562 YP_475392.1 CDS CYA_1986 NC_007775.1 2005093 2006355 R identified by match to protein family HMM PF00583; acetyltransferase complement(2005093..2006355) Synechococcus sp. JA-3-3Ab 3899563 YP_475393.1 CDS CYA_1987 NC_007775.1 2006475 2007128 R identified by similarity to PIR:AC2428; hypothetical protein complement(2006475..2007128) Synechococcus sp. JA-3-3Ab 3899564 YP_475394.1 CDS murA NC_007775.1 2007472 2008917 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2007472..2008917 Synechococcus sp. JA-3-3Ab 3899565 YP_475395.1 CDS CYA_1990 NC_007775.1 2009039 2010169 D identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR02032; geranylgeranyl reductase 2009039..2010169 Synechococcus sp. JA-3-3Ab 3899566 YP_475396.1 CDS CYA_1989 NC_007775.1 2010166 2010651 R identified by match to protein family HMM PF02518; sensor histidine kinase complement(2010166..2010651) Synechococcus sp. JA-3-3Ab 3899567 YP_475397.1 CDS CYA_1991 NC_007775.1 2010771 2011592 R identified by match to protein family HMM PF00691; OmpA family protein complement(2010771..2011592) Synechococcus sp. JA-3-3Ab 3899568 YP_475398.1 CDS CYA_1992 NC_007775.1 2011735 2012391 R identified by match to protein family HMM PF00717; S24 family peptidase complement(2011735..2012391) Synechococcus sp. JA-3-3Ab 3899569 YP_475399.1 CDS CYA_1993 NC_007775.1 2012542 2012814 D hypothetical protein 2012542..2012814 Synechococcus sp. JA-3-3Ab 3899570 YP_475400.1 CDS CYA_1994 NC_007775.1 2012908 2013270 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 2012908..2013270 Synechococcus sp. JA-3-3Ab 3899571 YP_475401.1 CDS CYA_1995 NC_007775.1 2013267 2014001 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 2013267..2014001 Synechococcus sp. JA-3-3Ab 3899572 YP_475402.1 CDS CYA_1996 NC_007775.1 2014003 2014548 D catalyzes the transfer of electrons from NADH to quinones; NADH dehydrogenase subunit J 2014003..2014548 Synechococcus sp. JA-3-3Ab 3899573 YP_475403.1 CDS CYA_1997 NC_007775.1 2014596 2014769 D hypothetical protein 2014596..2014769 Synechococcus sp. JA-3-3Ab 3899574 YP_475404.1 CDS CYA_1998 NC_007775.1 2014781 2016007 D identified by similarity to PIR:AF2225; match to protein family HMM PF02636; hypothetical protein 2014781..2016007 Synechococcus sp. JA-3-3Ab 3899575 YP_475405.1 CDS CYA_1999 NC_007775.1 2015755 2016264 D hypothetical protein 2015755..2016264 Synechococcus sp. JA-3-3Ab 3899576 YP_475406.1 CDS CYA_2000 NC_007775.1 2016332 2017822 R hypothetical protein complement(2016332..2017822) Synechococcus sp. JA-3-3Ab 3899503 YP_475407.1 CDS CYA_2001 NC_007775.1 2017853 2019133 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase complement(2017853..2019133) Synechococcus sp. JA-3-3Ab 3899504 YP_475408.1 CDS CYA_2002 NC_007775.1 2018988 2019605 R identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase complement(2018988..2019605) Synechococcus sp. JA-3-3Ab 3899505 YP_475409.1 CDS CYA_2003 NC_007775.1 2019791 2021053 R hypothetical protein complement(2019791..2021053) Synechococcus sp. JA-3-3Ab 3899506 YP_475410.1 CDS CYA_2004 NC_007775.1 2021157 2021975 D identified by similarity to GB:BAC09915.1; hypothetical protein 2021157..2021975 Synechococcus sp. JA-3-3Ab 3899507 YP_475411.1 CDS CYA_2005 NC_007775.1 2022286 2023263 D identified by match to protein family HMM PF00565; nuclease domain-containing protein 2022286..2023263 Synechococcus sp. JA-3-3Ab 3899508 YP_475412.1 CDS CYA_2006 NC_007775.1 2023324 2024142 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; hypothetical protein 2023324..2024142 Synechococcus sp. JA-3-3Ab 3899509 YP_475413.1 CDS CYA_2007 NC_007775.1 2024321 2024443 D hypothetical protein 2024321..2024443 Synechococcus sp. JA-3-3Ab 3899510 YP_475414.1 CDS CYA_2008 NC_007775.1 2024694 2025113 D hypothetical protein 2024694..2025113 Synechococcus sp. JA-3-3Ab 3899511 YP_475415.1 CDS CYA_2009 NC_007775.1 2025296 2026390 R identified by match to protein family HMM PF03819; match to protein family HMM TIGR00444; MazG family protein complement(2025296..2026390) Synechococcus sp. JA-3-3Ab 3899512 YP_475416.1 CDS CYA_2010 NC_007775.1 2026943 2027347 D identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfA 2026943..2027347 Synechococcus sp. JA-3-3Ab 3899513 YP_475417.1 CDS CYA_2012 NC_007775.1 2027934 2028476 D identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766; transposase, truncation 2027934..2028476 Synechococcus sp. JA-3-3Ab 3899515 YP_475418.1 CDS recG NC_007775.1 2028491 2030812 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(2028491..2030812) Synechococcus sp. JA-3-3Ab 3899516 YP_475419.1 CDS psaM NC_007775.1 2031074 2031172 R identified by similarity to SP:P25903; match to protein family HMM PF07465; photosystem I reaction center subunit XII complement(2031074..2031172) Synechococcus sp. JA-3-3Ab 3899517 YP_475420.1 CDS glyA NC_007775.1 2031422 2032726 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 2031422..2032726 Synechococcus sp. JA-3-3Ab 3899518 YP_475421.1 CDS CYA_2016 NC_007775.1 2032760 2033854 D identified by match to protein family HMM PF00953; glycoside hydrolase family protein 2032760..2033854 Synechococcus sp. JA-3-3Ab 3899519 YP_475422.1 CDS CYA_2017 NC_007775.1 2033862 2034485 D hypothetical protein 2033862..2034485 Synechococcus sp. JA-3-3Ab 3899520 YP_475423.1 CDS apt NC_007775.1 2034498 2035025 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(2034498..2035025) Synechococcus sp. JA-3-3Ab 3899521 YP_475424.1 CDS CYA_2019 NC_007775.1 2035204 2035641 D hypothetical protein 2035204..2035641 Synechococcus sp. JA-3-3Ab 3899387 YP_475425.1 CDS CYA_2020 NC_007775.1 2035763 2037637 R M3B family peptidase complement(2035763..2037637) Synechococcus sp. JA-3-3Ab 3899388 YP_475426.1 CDS CYA_2021 NC_007775.1 2037846 2039396 D identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368; Mg chelatase-like protein 2037846..2039396 Synechococcus sp. JA-3-3Ab 3899389 YP_475427.1 CDS recF NC_007775.1 2039458 2040600 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F complement(2039458..2040600) Synechococcus sp. JA-3-3Ab 3899390 YP_475428.1 CDS CYA_2023 NC_007775.1 2040704 2041396 R helix-turn-helix domain-containing protein complement(2040704..2041396) Synechococcus sp. JA-3-3Ab 3899391 YP_475429.1 CDS CYA_2026 NC_007775.1 2042952 2043209 R hypothetical protein complement(2042952..2043209) Synechococcus sp. JA-3-3Ab 3899394 YP_475430.1 CDS CYA_2027 NC_007775.1 2043231 2043920 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(2043231..2043920) Synechococcus sp. JA-3-3Ab 3899395 YP_475431.1 CDS CYA_2028 NC_007775.1 2043999 2044391 D hypothetical protein 2043999..2044391 Synechococcus sp. JA-3-3Ab 3899396 YP_475432.1 CDS CYA_2029 NC_007775.1 2044446 2045318 R identified by match to protein family HMM PF01497; iron chelate ABC transporter substrate-binding protein complement(2044446..2045318) Synechococcus sp. JA-3-3Ab 3899397 YP_475433.1 CDS CYA_2030 NC_007775.1 2045348 2046667 R identified by similarity to GB:AAF04082.1; match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB family protein complement(2045348..2046667) Synechococcus sp. JA-3-3Ab 3899398 YP_475434.1 CDS CYA_2031 NC_007775.1 2046708 2049128 R identified by similarity to GB:AAC27029.1; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01785; match to protein family HMM TIGR01786; TonB-dependent heme/hemoglobin receptor family protein complement(2046708..2049128) Synechococcus sp. JA-3-3Ab 3899399 YP_475435.1 CDS CYA_2032 NC_007775.1 2049166 2050011 R identified by similarity to SP:P15031; match to protein family HMM PF00005; iron chelate ABC transporter ATP-binding protein complement(2049166..2050011) Synechococcus sp. JA-3-3Ab 3899400 YP_475436.1 CDS CYA_2033 NC_007775.1 2050008 2051051 R identified by similarity to SP:P15029; match to protein family HMM PF01032; iron chelate ABC transporter permease complement(2050008..2051051) Synechococcus sp. JA-3-3Ab 3899401 YP_475437.1 CDS CYA_2034 NC_007775.1 2051443 2052723 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; transposase complement(2051443..2052723) Synechococcus sp. JA-3-3Ab 3899402 YP_475438.1 CDS mutS NC_007775.1 2052972 2055620 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 2052972..2055620 Synechococcus sp. JA-3-3Ab 3899403 YP_475439.1 CDS CYA_2036 NC_007775.1 2055623 2056153 R identified by similarity to GB:BAC91704.1; hypothetical protein complement(2055623..2056153) Synechococcus sp. JA-3-3Ab 3899404 YP_475440.1 CDS CYA_2037 NC_007775.1 2056745 2057839 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; the proteins in this cluster is involved expression of genes important stationary phase, nitrogen promoter recognition, and light/dark adaption; RNA polymerase sigma factor SigC 2056745..2057839 Synechococcus sp. JA-3-3Ab 3899405 YP_475441.1 CDS mviN NC_007775.1 2057850 2059484 R identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN complement(2057850..2059484) Synechococcus sp. JA-3-3Ab 3899406 YP_475442.1 CDS CYA_2039 NC_007775.1 2059650 2060015 R hypothetical protein complement(2059650..2060015) Synechococcus sp. JA-3-3Ab 3899296 YP_475443.1 CDS cpcE-2 NC_007775.1 2060229 2061056 R identified by match to protein family HMM PF03130; phycocyanin alpha subunit phycocyanobilin lyase, CpcE subunit complement(2060229..2061056) Synechococcus sp. JA-3-3Ab 3899297 YP_475444.1 CDS cpcC NC_007775.1 2061089 2061946 R identified by similarity to SP:P11398; match to protein family HMM PF00427; match to protein family HMM PF01383; phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rod complement(2061089..2061946) Synechococcus sp. JA-3-3Ab 3899298 YP_475445.1 CDS cpcA-2 NC_007775.1 2062221 2062703 R identified by similarity to SP:P07121; match to protein family HMM PF00502; match to protein family HMM TIGR01338; phycocyanin subunit alpha complement(2062221..2062703) Synechococcus sp. JA-3-3Ab 3899299 YP_475446.1 CDS cpcB-2 NC_007775.1 2062891 2063409 R identified by similarity to SP:P07120; match to protein family HMM PF00502; phycocyanin subunit beta complement(2062891..2063409) Synechococcus sp. JA-3-3Ab 3899300 YP_475447.1 CDS cpeT NC_007775.1 2064145 2064744 D identified by similarity to GB:AAK11648.1; match to protein family HMM PF06206; CpeT protein 2064145..2064744 Synechococcus sp. JA-3-3Ab 3899301 YP_475448.1 CDS pheS NC_007775.1 2064896 2065897 D identified by match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468; phenylalanyl-tRNA synthetase subunit alpha 2064896..2065897 Synechococcus sp. JA-3-3Ab 3899302 YP_475449.1 CDS CYA_2046 NC_007775.1 2065899 2066192 R identified by similarity to PIR:AD1867; hypothetical protein complement(2065899..2066192) Synechococcus sp. JA-3-3Ab 3899303 YP_475450.1 CDS CYA_2047 NC_007775.1 2066390 2066974 R hypothetical protein complement(2066390..2066974) Synechococcus sp. JA-3-3Ab 3899304 YP_475451.1 CDS CYA_2048 NC_007775.1 2067062 2067805 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2067062..2067805) Synechococcus sp. JA-3-3Ab 3899305 YP_475452.1 CDS CYA_2049 NC_007775.1 2067865 2069631 R identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(2067865..2069631) Synechococcus sp. JA-3-3Ab 3899306 YP_475453.1 CDS CYA_2050 NC_007775.1 2069890 2071383 R cellulose synthase, catalytic subunit-like protein complement(2069890..2071383) Synechococcus sp. JA-3-3Ab 3899307 YP_475454.1 CDS rpmA NC_007775.1 2071510 2071779 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(2071510..2071779) Synechococcus sp. JA-3-3Ab 3899308 YP_475455.1 CDS rplU NC_007775.1 2071840 2072247 R identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 complement(2071840..2072247) Synechococcus sp. JA-3-3Ab 3899309 YP_475456.1 CDS CYA_2053 NC_007775.1 2072405 2073154 R hypothetical protein complement(2072405..2073154) Synechococcus sp. JA-3-3Ab 3899310 YP_475457.1 CDS CYA_2054 NC_007775.1 2073207 2073488 R hypothetical protein complement(2073207..2073488) Synechococcus sp. JA-3-3Ab 3899311 YP_475458.1 CDS CYA_2055 NC_007775.1 2073485 2074417 R identified by match to protein family HMM PF00226; match to protein family HMM PF01556; DnaJ family protein complement(2073485..2074417) Synechococcus sp. JA-3-3Ab 3899312 YP_475459.1 CDS CYA_2056 NC_007775.1 2074539 2075300 R identified by similarity to GB:BAC09967.1; hypothetical protein complement(2074539..2075300) Synechococcus sp. JA-3-3Ab 3899313 YP_475460.1 CDS CYA_2057 NC_007775.1 2075577 2076425 R identified by match to protein family HMM PF04389; M28A family peptidase complement(2075577..2076425) Synechococcus sp. JA-3-3Ab 3899314 YP_475461.1 CDS CYA_2058 NC_007775.1 2076422 2077198 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD family hydrolase complement(2076422..2077198) Synechococcus sp. JA-3-3Ab 3899241 YP_475462.1 CDS lpdA NC_007775.1 2077343 2078725 D E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 2077343..2078725 Synechococcus sp. JA-3-3Ab 3899242 YP_475463.1 CDS CYA_2060 NC_007775.1 2078861 2080132 D hypothetical protein 2078861..2080132 Synechococcus sp. JA-3-3Ab 3899243 YP_475464.1 CDS CYA_2061 NC_007775.1 2080171 2081562 R Member of MEROPS family U62, which contains contains microcin-processing peptidases of unknown catalytic mechanism.; identified by similarity to SP:P46473; match to protein family HMM PF01523; peptidase TldD complement(2080171..2081562) Synechococcus sp. JA-3-3Ab 3899244 YP_475465.1 CDS glgB NC_007775.1 2081587 2083899 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(2081587..2083899) Synechococcus sp. JA-3-3Ab 3899245 YP_475466.1 CDS CYA_2063 NC_007775.1 2083980 2085251 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc3, orfB transposase complement(2083980..2085251) Synechococcus sp. JA-3-3Ab 3899246 YP_475467.1 CDS CYA_2064 NC_007775.1 2085207 2085683 D identified by match to protein family HMM PF01797; ISSoc3, orfA transposase 2085207..2085683 Synechococcus sp. JA-3-3Ab 3899247 YP_475468.1 CDS tatA-2 NC_007775.1 2085907 2086185 D identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; Sec-independent protein translocase protein TatA 2085907..2086185 Synechococcus sp. JA-3-3Ab 3899248 YP_475469.1 CDS CYA_2066 NC_007775.1 2086424 2087257 D identified by match to protein family HMM PF04542; RNA polymerase sigma-70 domain-containing protein 2086424..2087257 Synechococcus sp. JA-3-3Ab 3899249 YP_475470.1 CDS CYA_2067 NC_007775.1 2087286 2088311 D identified by match to protein family HMM PF05249; hypothetical protein 2087286..2088311 Synechococcus sp. JA-3-3Ab 3899250 YP_475471.1 CDS CYA_2068 NC_007775.1 2088432 2088539 D hypothetical protein 2088432..2088539 Synechococcus sp. JA-3-3Ab 3899251 YP_475472.1 CDS CYA_2069 NC_007775.1 2088582 2088947 D identified by similarity to PIR:S76173; hypothetical protein 2088582..2088947 Synechococcus sp. JA-3-3Ab 3899252 YP_475473.1 CDS CYA_2070 NC_007775.1 2089022 2089474 D identified by similarity to GB:BAC08024.1; hypothetical protein 2089022..2089474 Synechococcus sp. JA-3-3Ab 3899253 YP_475474.1 CDS glgA NC_007775.1 2089672 2091147 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 2089672..2091147 Synechococcus sp. JA-3-3Ab 3899254 YP_475475.1 CDS CYA_2072 NC_007775.1 2091300 2092907 D identified by match to protein family HMM PF03065; glycosyl hydrolase family protein 2091300..2092907 Synechococcus sp. JA-3-3Ab 3899255 YP_475476.1 CDS ilvB NC_007775.1 2093190 2094986 R catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit complement(2093190..2094986) Synechococcus sp. JA-3-3Ab 3899256 YP_475477.1 CDS CYA_2074 NC_007775.1 2095217 2095312 D hypothetical protein 2095217..2095312 Synechococcus sp. JA-3-3Ab 3899257 YP_475478.1 CDS CYA_2075 NC_007775.1 2095412 2095531 D hypothetical protein 2095412..2095531 Synechococcus sp. JA-3-3Ab 3899258 YP_475479.1 CDS CYA_2076 NC_007775.1 2095714 2096265 R hypothetical protein complement(2095714..2096265) Synechococcus sp. JA-3-3Ab 3899259 YP_475480.1 CDS CYA_2077 NC_007775.1 2096252 2096671 R hypothetical protein complement(2096252..2096671) Synechococcus sp. JA-3-3Ab 3899260 YP_475481.1 CDS CYA_2078 NC_007775.1 2096672 2098180 R hypothetical protein complement(2096672..2098180) Synechococcus sp. JA-3-3Ab 3899222 YP_475482.1 CDS CYA_2079 NC_007775.1 2098221 2100545 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720; hypothetical protein 2098221..2100545 Synechococcus sp. JA-3-3Ab 3899223 YP_475483.1 CDS CYA_2080 NC_007775.1 2100756 2101133 R hypothetical protein complement(2100756..2101133) Synechococcus sp. JA-3-3Ab 3899224 YP_475484.1 CDS CYA_2081 NC_007775.1 2101216 2101767 R identified by similarity to GB:AAC97587.1; ISSoc4, transposase orfB complement(2101216..2101767) Synechococcus sp. JA-3-3Ab 3899225 YP_475485.1 CDS CYA_2082 NC_007775.1 2101749 2102147 R identified by similarity to PIR:AD2038; ISSoc4, transposase orfA complement(2101749..2102147) Synechococcus sp. JA-3-3Ab 3899226 YP_475486.1 CDS CYA_2083 NC_007775.1 2102434 2102694 R sulfate permease complement(2102434..2102694) Synechococcus sp. JA-3-3Ab 3899227 YP_475487.1 CDS CYA_2084 NC_007775.1 2102943 2103374 D hypothetical protein 2102943..2103374 Synechococcus sp. JA-3-3Ab 3899228 YP_475488.1 CDS CYA_2085 NC_007775.1 2103444 2104289 D identified by similarity to GB:BAC90914.1; hypothetical protein 2103444..2104289 Synechococcus sp. JA-3-3Ab 3899229 YP_475489.1 CDS CYA_2086 NC_007775.1 2104399 2105160 D identified by similarity to GB:BAC07807.1; hypothetical protein 2104399..2105160 Synechococcus sp. JA-3-3Ab 3899230 YP_475490.1 CDS CYA_2087 NC_007775.1 2105167 2105934 D identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; hypothetical protein 2105167..2105934 Synechococcus sp. JA-3-3Ab 3899231 YP_475491.1 CDS CYA_2088 NC_007775.1 2105977 2107104 R identified by match to protein family HMM PF00160; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(2105977..2107104) Synechococcus sp. JA-3-3Ab 3899232 YP_475492.1 CDS CYA_2089 NC_007775.1 2107234 2107683 R collagen alpha 1(III) chain complement(2107234..2107683) Synechococcus sp. JA-3-3Ab 3899233 YP_475493.1 CDS CYA_2090 NC_007775.1 2107752 2107850 D hypothetical protein 2107752..2107850 Synechococcus sp. JA-3-3Ab 3899234 YP_475494.1 CDS CYA_2091 NC_007775.1 2108029 2109066 R hypothetical protein complement(2108029..2109066) Synechococcus sp. JA-3-3Ab 3899235 YP_475495.1 CDS CYA_2092 NC_007775.1 2108667 2108861 R hypothetical protein complement(2108667..2108861) Synechococcus sp. JA-3-3Ab 3899236 YP_475496.1 CDS CYA_2093 NC_007775.1 2109020 2110315 R hypothetical protein complement(2109020..2110315) Synechococcus sp. JA-3-3Ab 3899237 YP_475497.1 CDS CYA_2094 NC_007775.1 2110346 2110480 D hypothetical protein 2110346..2110480 Synechococcus sp. JA-3-3Ab 3899238 YP_475498.1 CDS CYA_2095 NC_007775.1 2110496 2111197 D hypothetical protein 2110496..2111197 Synechococcus sp. JA-3-3Ab 3899239 YP_475499.1 CDS tyrS NC_007775.1 2111265 2112518 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(2111265..2112518) Synechococcus sp. JA-3-3Ab 3899240 YP_475500.1 CDS psbU NC_007775.1 2112928 2113326 R stabilizes and protects the oxygen-evolving complex of photosystem II against heat-induced inactivation; photosystem II complex extrinsic protein U complement(2112928..2113326) Synechococcus sp. JA-3-3Ab 3899144 YP_475501.1 CDS gcvP NC_007775.1 2113505 2116435 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 2113505..2116435 Synechococcus sp. JA-3-3Ab 3899145 YP_475502.1 CDS CYA_2099 NC_007775.1 2116444 2117259 R hypothetical protein complement(2116444..2117259) Synechococcus sp. JA-3-3Ab 3899146 YP_475503.1 CDS CYA_2100 NC_007775.1 2117544 2118944 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(2117544..2118944) Synechococcus sp. JA-3-3Ab 3899147 YP_475504.1 CDS CYA_2101 NC_007775.1 2118941 2119129 R identified by similarity to PIR:AF1933; hypothetical protein complement(2118941..2119129) Synechococcus sp. JA-3-3Ab 3899148 YP_475505.1 CDS CYA_2102 NC_007775.1 2119223 2119831 R hypothetical protein complement(2119223..2119831) Synechococcus sp. JA-3-3Ab 3899149 YP_475506.1 CDS CYA_2103 NC_007775.1 2119978 2120823 R identified by similarity to PIR:AH2295; match to protein family HMM PF05430; hypothetical protein complement(2119978..2120823) Synechococcus sp. JA-3-3Ab 3899150 YP_475507.1 CDS accD NC_007775.1 2120988 2121932 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 2120988..2121932 Synechococcus sp. JA-3-3Ab 3899151 YP_475508.1 CDS CYA_2105 NC_007775.1 2122212 2122586 D identified by similarity to SP:Q9WVX8; match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-anti-sigma factor 2122212..2122586 Synechococcus sp. JA-3-3Ab 3899152 YP_475509.1 CDS CYA_2107 NC_007775.1 2122669 2123367 D hypothetical protein 2122669..2123367 Synechococcus sp. JA-3-3Ab 3899153 YP_475510.1 CDS CYA_2106 NC_007775.1 2123364 2125556 R identified by match to protein family HMM PF02254; TrkA domain-containing protein complement(2123364..2125556) Synechococcus sp. JA-3-3Ab 3899154 YP_475511.1 CDS CYA_2108 NC_007775.1 2125625 2125777 R hypothetical protein complement(2125625..2125777) Synechococcus sp. JA-3-3Ab 3899155 YP_475512.1 CDS CYA_2109 NC_007775.1 2125969 2127015 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409; iron ABC transporter substrate-binding protein 2125969..2127015 Synechococcus sp. JA-3-3Ab 3899156 YP_475513.1 CDS CYA_2110 NC_007775.1 2127006 2127473 D hypothetical protein 2127006..2127473 Synechococcus sp. JA-3-3Ab 3899157 YP_475514.1 CDS CYA_2111 NC_007775.1 2127641 2129362 D identified by match to protein family HMM PF00528; iron ABC transporter permease 2127641..2129362 Synechococcus sp. JA-3-3Ab 3899158 YP_475515.1 CDS atpG NC_007775.1 2129478 2130422 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(2129478..2130422) Synechococcus sp. JA-3-3Ab 3899159 YP_475516.1 CDS atpA NC_007775.1 2130468 2131988 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(2130468..2131988) Synechococcus sp. JA-3-3Ab 3899160 YP_475517.1 CDS atpH NC_007775.1 2132048 2132596 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(2132048..2132596) Synechococcus sp. JA-3-3Ab 3899161 YP_475518.1 CDS atpF NC_007775.1 2132613 2133155 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(2132613..2133155) Synechococcus sp. JA-3-3Ab 3899162 YP_475519.1 CDS CYA_2116 NC_007775.1 2133209 2133682 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B' complement(2133209..2133682) Synechococcus sp. JA-3-3Ab 3899163 YP_475520.1 CDS atpE NC_007775.1 2133777 2134022 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(2133777..2134022) Synechococcus sp. JA-3-3Ab 3899106 YP_475521.1 CDS CYA_2118 NC_007775.1 2134167 2134298 R hypothetical protein complement(2134167..2134298) Synechococcus sp. JA-3-3Ab 3899107 YP_475522.1 CDS atpB NC_007775.1 2134252 2134998 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(2134252..2134998) Synechococcus sp. JA-3-3Ab 3899108 YP_475523.1 CDS CYA_2120 NC_007775.1 2135004 2135384 R identified by similarity to SP:P12403; ATP synthase protein I complement(2135004..2135384) Synechococcus sp. JA-3-3Ab 3899109 YP_475524.1 CDS CYA_2121 NC_007775.1 2135901 2136488 D identified by similarity to PIR:AB2162; hypothetical protein 2135901..2136488 Synechococcus sp. JA-3-3Ab 3899110 YP_475525.1 CDS CYA_2122 NC_007775.1 2136485 2136799 D hypothetical protein 2136485..2136799 Synechococcus sp. JA-3-3Ab 3899111 YP_475526.1 CDS gpmI NC_007775.1 2136813 2138405 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(2136813..2138405) Synechococcus sp. JA-3-3Ab 3899112 YP_475527.1 CDS CYA_2124 NC_007775.1 2138613 2139137 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein complement(2138613..2139137) Synechococcus sp. JA-3-3Ab 3899113 YP_475528.1 CDS dps NC_007775.1 2139180 2139680 R binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA starvation/stationary phase protection protein Dps complement(2139180..2139680) Synechococcus sp. JA-3-3Ab 3899114 YP_475529.1 CDS trmE NC_007775.1 2139799 2141178 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(2139799..2141178) Synechococcus sp. JA-3-3Ab 3899115 YP_475530.1 CDS glgP NC_007775.1 2141368 2143968 D identified by similarity to GB:CAA04523.1; match to protein family HMM PF00343; match to protein family HMM TIGR02094; alpha-glucan phosphorylase 2141368..2143968 Synechococcus sp. JA-3-3Ab 3899116 YP_475531.1 CDS CYA_2128 NC_007775.1 2144130 2145191 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; hypothetical protein 2144130..2145191 Synechococcus sp. JA-3-3Ab 3899117 YP_475532.1 CDS CYA_2129 NC_007775.1 2145184 2145312 D hypothetical protein 2145184..2145312 Synechococcus sp. JA-3-3Ab 3899118 YP_475533.1 CDS ilvH NC_007775.1 2145309 2145833 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2145309..2145833 Synechococcus sp. JA-3-3Ab 3899119 YP_475534.1 CDS CYA_2131 NC_007775.1 2145879 2146520 D hypothetical protein 2145879..2146520 Synechococcus sp. JA-3-3Ab 3899120 YP_475535.1 CDS CYA_2132 NC_007775.1 2146709 2147455 R hypothetical protein complement(2146709..2147455) Synechococcus sp. JA-3-3Ab 3899121 YP_475536.1 CDS glk NC_007775.1 2147594 2148640 D catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 2147594..2148640 Synechococcus sp. JA-3-3Ab 3899122 YP_475537.1 CDS CYA_2133 NC_007775.1 2148619 2148723 R hypothetical protein complement(2148619..2148723) Synechococcus sp. JA-3-3Ab 3899123 YP_475538.1 CDS CYA_2135 NC_007775.1 2148726 2149301 R identified by match to protein family HMM PF00293; NUDIX family hydrolase complement(2148726..2149301) Synechococcus sp. JA-3-3Ab 3899124 YP_475539.1 CDS trpE NC_007775.1 2149406 2150902 D identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00564; anthranilate synthase component I 2149406..2150902 Synechococcus sp. JA-3-3Ab 3899086 YP_475540.1 CDS CYA_2137 NC_007775.1 2150921 2151715 D identified by match to protein family HMM PF05721; phytanoyl-CoA dioxygenase PhyH family protein 2150921..2151715 Synechococcus sp. JA-3-3Ab 3899087 YP_475541.1 CDS chlG NC_007775.1 2151943 2152863 D identified by match to protein family HMM PF01040; match to protein family HMM TIGR01476; match to protein family HMM TIGR02056; bacteriochlorophyll/chlorophyll a synthase 2151943..2152863 Synechococcus sp. JA-3-3Ab 3899088 YP_475542.1 CDS CYA_2139 NC_007775.1 2152880 2153023 D hypothetical protein 2152880..2153023 Synechococcus sp. JA-3-3Ab 3899089 YP_475543.1 CDS CYA_2140 NC_007775.1 2153020 2153475 D hypothetical protein 2153020..2153475 Synechococcus sp. JA-3-3Ab 3899090 YP_475544.1 CDS CYA_2141 NC_007775.1 2153498 2154880 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792; sugar glycoside-pentoside-hexuronide (GPH):cation symporter family protein complement(2153498..2154880) Synechococcus sp. JA-3-3Ab 3899091 YP_475545.1 CDS aspA NC_007775.1 2154964 2156349 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(2154964..2156349) Synechococcus sp. JA-3-3Ab 3899092 YP_475546.1 CDS CYA_2143 NC_007775.1 2156386 2156652 R hypothetical protein complement(2156386..2156652) Synechococcus sp. JA-3-3Ab 3899093 YP_475547.1 CDS infC NC_007775.1 2156949 2157506 D identified by similarity to SP:O33567; match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168; translation initiation factor IF-3 2156949..2157506 Synechococcus sp. JA-3-3Ab 3899094 YP_475548.1 CDS bcp NC_007775.1 2157522 2157986 D identified by match to protein family HMM PF00578; bacterioferritin comigratory protein 2157522..2157986 Synechococcus sp. JA-3-3Ab 3899095 YP_475549.1 CDS CYA_2146 NC_007775.1 2158113 2160044 D identified by similarity to GB:AAD42859.1; match to protein family HMM PF00069; serine/threonine protein kinase 2158113..2160044 Synechococcus sp. JA-3-3Ab 3899096 YP_475550.1 CDS CYA_2147 NC_007775.1 2160096 2161619 R identified by match to protein family HMM PF01926; GTP-binding domain-containing protein complement(2160096..2161619) Synechococcus sp. JA-3-3Ab 3899097 YP_475551.1 CDS CYA_2148 NC_007775.1 2161837 2162022 R hypothetical protein complement(2161837..2162022) Synechococcus sp. JA-3-3Ab 3899098 YP_475552.1 CDS CYA_2149 NC_007775.1 2161892 2162068 R hypothetical protein complement(2161892..2162068) Synechococcus sp. JA-3-3Ab 3899099 YP_475553.1 CDS CYA_2150 NC_007775.1 2162126 2162611 R identified by match to protein family HMM PF02469; fasciclin domain-containing protein complement(2162126..2162611) Synechococcus sp. JA-3-3Ab 3899100 YP_475554.1 CDS CYA_2151 NC_007775.1 2162830 2164593 D identified by match to protein family HMM PF00614; match to protein family HMM PF00633; match to protein family HMM TIGR00426; phospholipase D 2162830..2164593 Synechococcus sp. JA-3-3Ab 3899101 YP_475555.1 CDS accA NC_007775.1 2164603 2165586 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(2164603..2165586) Synechococcus sp. JA-3-3Ab 3899102 YP_475556.1 CDS CYA_2154 NC_007775.1 2165821 2166285 D hypothetical protein 2165821..2166285 Synechococcus sp. JA-3-3Ab 3899103 YP_475557.1 CDS CYA_2153 NC_007775.1 2166261 2166743 R hypothetical protein complement(2166261..2166743) Synechococcus sp. JA-3-3Ab 3899104 YP_475558.1 CDS CYA_2155 NC_007775.1 2166747 2169575 R identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; sensor histindine kinase/response regulator complement(2166747..2169575) Synechococcus sp. JA-3-3Ab 3899105 YP_475559.1 CDS CYA_2156 NC_007775.1 2169520 2170581 R identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein, truncation complement(2169520..2170581) Synechococcus sp. JA-3-3Ab 3899067 YP_475560.1 CDS CYA_2158 NC_007775.1 2170715 2171908 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc1, transposase 2170715..2171908 Synechococcus sp. JA-3-3Ab 3899068 YP_475561.1 CDS CYA_2157 NC_007775.1 2171905 2172813 R identified by similarity to PIR:S76707; hypothetical protein complement(2171905..2172813) Synechococcus sp. JA-3-3Ab 3899069 YP_475562.1 CDS CYA_2159 NC_007775.1 2172824 2173066 R hypothetical protein complement(2172824..2173066) Synechococcus sp. JA-3-3Ab 3899070 YP_475563.1 CDS CYA_2160 NC_007775.1 2173121 2173669 R identified by match to protein family HMM PF01584; CheW domain-containing protein complement(2173121..2173669) Synechococcus sp. JA-3-3Ab 3899071 YP_475564.1 CDS CYA_2161 NC_007775.1 2173777 2174151 R identified by similarity to SP:P43501; match to protein family HMM PF00072; response regulator complement(2173777..2174151) Synechococcus sp. JA-3-3Ab 3899072 YP_475565.1 CDS CYA_2162 NC_007775.1 2174199 2175443 R identified by match to protein family HMM PF00072; response regulator complement(2174199..2175443) Synechococcus sp. JA-3-3Ab 3899073 YP_475566.1 CDS CYA_2163 NC_007775.1 2175829 2176308 R identified by match to protein family HMM PF00293; NUDIX family hydrolase complement(2175829..2176308) Synechococcus sp. JA-3-3Ab 3899074 YP_475567.1 CDS CYA_2164 NC_007775.1 2176315 2177547 R hypothetical protein complement(2176315..2177547) Synechococcus sp. JA-3-3Ab 3899075 YP_475568.1 CDS CYA_2165 NC_007775.1 2177602 2177802 R identified by similarity to PIR:AC2310; hypothetical protein complement(2177602..2177802) Synechococcus sp. JA-3-3Ab 3899076 YP_475569.1 CDS CYA_2166 NC_007775.1 2177856 2180051 R identified by match to protein family HMM PF02171; piwi domain-containing protein complement(2177856..2180051) Synechococcus sp. JA-3-3Ab 3899077 YP_475570.1 CDS CYA_2167 NC_007775.1 2180122 2180589 R hypothetical protein complement(2180122..2180589) Synechococcus sp. JA-3-3Ab 3899078 YP_475571.1 CDS CYA_2168 NC_007775.1 2180637 2181737 R lipoprotein complement(2180637..2181737) Synechococcus sp. JA-3-3Ab 3899079 YP_475572.1 CDS nrdJ NC_007775.1 2181900 2185367 R identified by match to protein family HMM TIGR01443; match to protein family HMM TIGR01445; match to protein family HMM TIGR02505; ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent, intein-contatining complement(2181900..2185367) Synechococcus sp. JA-3-3Ab 3899080 YP_475573.1 CDS CYA_2170 NC_007775.1 2185700 2186890 D identified by match to protein family HMM PF00571; match to protein family HMM PF02163; M50B family peptidase 2185700..2186890 Synechococcus sp. JA-3-3Ab 3899081 YP_475574.1 CDS CYA_2171 NC_007775.1 2187005 2188312 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16B family peptidase 2187005..2188312 Synechococcus sp. JA-3-3Ab 3899082 YP_475575.1 CDS CYA_2172 NC_007775.1 2188312 2189625 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 2188312..2189625 Synechococcus sp. JA-3-3Ab 3899083 YP_475576.1 CDS CYA_2173 NC_007775.1 2189855 2190574 R identified by match to protein family HMM PF04474; hypothetical protein complement(2189855..2190574) Synechococcus sp. JA-3-3Ab 3899084 YP_475577.1 CDS CYA_2174 NC_007775.1 2190749 2191273 D identified by match to protein family HMM PF00583; acetyltransferase 2190749..2191273 Synechococcus sp. JA-3-3Ab 3899085 YP_475578.1 CDS CYA_2175 NC_007775.1 2191277 2191987 D hypothetical protein 2191277..2191987 Synechococcus sp. JA-3-3Ab 3899047 YP_475579.1 CDS CYA_2176 NC_007775.1 2191994 2192713 R Psb29; involved in biogenesis of the photosystem II; in Arabidopsis it interacts with the heterotrimeric G-protein (GPA1) and seems to be involved in a D-glucose signaling mechanism between plastid and the plasma membranes; Thf1-like protein complement(2191994..2192713) Synechococcus sp. JA-3-3Ab 3899048 YP_475580.1 CDS proB NC_007775.1 2192866 2193981 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 2192866..2193981 Synechococcus sp. JA-3-3Ab 3899049 YP_475581.1 CDS CYA_2178 NC_007775.1 2193986 2195272 R identified by match to protein family HMM PF07690; major facilitator transporter complement(2193986..2195272) Synechococcus sp. JA-3-3Ab 3899050 YP_475582.1 CDS gap-3 NC_007775.1 2195310 2196320 R identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I complement(2195310..2196320) Synechococcus sp. JA-3-3Ab 3899051 YP_475583.1 CDS murI NC_007775.1 2196566 2197444 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(2196566..2197444) Synechococcus sp. JA-3-3Ab 3899052 YP_475584.1 CDS CYA_2181 NC_007775.1 2197595 2199466 R identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase complement(2197595..2199466) Synechococcus sp. JA-3-3Ab 3899053 YP_475585.1 CDS CYA_2182 NC_007775.1 2199575 2200729 D hypothetical protein 2199575..2200729 Synechococcus sp. JA-3-3Ab 3899054 YP_475586.1 CDS CYA_2183 NC_007775.1 2200785 2203076 R identified by match to protein family HMM PF00686; nuclease domain-containing protein complement(2200785..2203076) Synechococcus sp. JA-3-3Ab 3899055 YP_475587.1 CDS CYA_2184 NC_007775.1 2203378 2204712 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(2203378..2204712) Synechococcus sp. JA-3-3Ab 3899056 YP_475588.1 CDS miaE NC_007775.1 2204738 2205343 R identified by similarity to SP:Q08015; match to protein family HMM PF06175; tRNA-(MS[2]IO[6]A)-hydroxylase complement(2204738..2205343) Synechococcus sp. JA-3-3Ab 3899057 YP_475589.1 CDS CYA_2186 NC_007775.1 2205545 2206615 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2205545..2206615) Synechococcus sp. JA-3-3Ab 3899058 YP_475590.1 CDS CYA_2187 NC_007775.1 2207155 2208510 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(2207155..2208510) Synechococcus sp. JA-3-3Ab 3899059 YP_475592.1 CDS sufR NC_007775.1 2208774 2209502 R identified by similarity to PIR:S76597; match to protein family HMM PF08220; match to protein family HMM TIGR02702; iron-sulfur cluster biosynthesis transcriptional regulator SufR complement(2208774..2209502) Synechococcus sp. JA-3-3Ab 3899061 YP_475593.1 CDS sufB NC_007775.1 2209665 2211101 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 2209665..2211101 Synechococcus sp. JA-3-3Ab 3899062 YP_475594.1 CDS mscL NC_007775.1 2211346 2211744 D identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220; large conductance mechanosensitive channel protein 2211346..2211744 Synechococcus sp. JA-3-3Ab 3899063 YP_475595.1 CDS CYA_2191 NC_007775.1 2211725 2211826 R hypothetical protein complement(2211725..2211826) Synechococcus sp. JA-3-3Ab 3899064 YP_475596.1 CDS sufC NC_007775.1 2211842 2212657 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978; FeS assembly ATPase SufC 2211842..2212657 Synechococcus sp. JA-3-3Ab 3899065 YP_475597.1 CDS sufD NC_007775.1 2212654 2213943 D identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981; FeS assembly protein SufD 2212654..2213943 Synechococcus sp. JA-3-3Ab 3899066 YP_475598.1 CDS CYA_2195 NC_007775.1 2214617 2215069 D identified by match to protein family HMM TIGR01439; AbrB family transcriptional regulator 2214617..2215069 Synechococcus sp. JA-3-3Ab 3899028 YP_475599.1 CDS CYA_2196 NC_007775.1 2215206 2216606 D identified by similarity to PIR:AD2437; hypothetical protein 2215206..2216606 Synechococcus sp. JA-3-3Ab 3899029 YP_475600.1 CDS CYA_2197 NC_007775.1 2216928 2217353 R identified by match to protein family HMM PF01957; nodulation efficiency family protein complement(2216928..2217353) Synechococcus sp. JA-3-3Ab 3899030 YP_475601.1 CDS CYA_2198 NC_007775.1 2217437 2217676 R hypothetical protein complement(2217437..2217676) Synechococcus sp. JA-3-3Ab 3899031 YP_475602.1 CDS CYA_2200 NC_007775.1 2217819 2218007 D hypothetical protein 2217819..2218007 Synechococcus sp. JA-3-3Ab 3899032 YP_475603.1 CDS rrmJ NC_007775.1 2217989 2219059 R identified by match to protein family HMM PF01728; ribosomal RNA large subunit methytransferase J complement(2217989..2219059) Synechococcus sp. JA-3-3Ab 3899033 YP_475604.1 CDS leuD NC_007775.1 2219056 2219643 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(2219056..2219643) Synechococcus sp. JA-3-3Ab 3899034 YP_475605.1 CDS CYA_2203 NC_007775.1 2219606 2219800 D hypothetical protein 2219606..2219800 Synechococcus sp. JA-3-3Ab 3899035 YP_475606.1 CDS CYA_2202 NC_007775.1 2219797 2220123 R hypothetical protein complement(2219797..2220123) Synechococcus sp. JA-3-3Ab 3899036 YP_475607.1 CDS CYA_2204 NC_007775.1 2220165 2220512 D hypothetical protein 2220165..2220512 Synechococcus sp. JA-3-3Ab 3899037 YP_475608.1 CDS CYA_2205 NC_007775.1 2220509 2220667 D hypothetical protein 2220509..2220667 Synechococcus sp. JA-3-3Ab 3899038 YP_475609.1 CDS pyk NC_007775.1 2221071 2222912 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 2221071..2222912 Synechococcus sp. JA-3-3Ab 3899039 YP_475610.1 CDS CYA_2207 NC_007775.1 2223017 2223148 D hypothetical protein 2223017..2223148 Synechococcus sp. JA-3-3Ab 3899040 YP_475611.1 CDS CYA_2208 NC_007775.1 2223210 2223746 D hypothetical protein 2223210..2223746 Synechococcus sp. JA-3-3Ab 3899041 YP_475612.1 CDS CYA_2210 NC_007775.1 2224764 2225393 D identified by match to protein family HMM PF02632; BioY family protein 2224764..2225393 Synechococcus sp. JA-3-3Ab 3899043 YP_475613.1 CDS CYA_2211 NC_007775.1 2226166 2226342 R hypothetical protein complement(2226166..2226342) Synechococcus sp. JA-3-3Ab 3899044 YP_475614.1 CDS CYA_2212 NC_007775.1 2226777 2227883 R hypothetical protein complement(2226777..2227883) Synechococcus sp. JA-3-3Ab 3899045 YP_475615.1 CDS CYA_2213 NC_007775.1 2228071 2228433 D hypothetical protein 2228071..2228433 Synechococcus sp. JA-3-3Ab 3899046 YP_475616.1 CDS rpmB NC_007775.1 2228458 2228694 D required for 70S ribosome assembly; 50S ribosomal protein L28 2228458..2228694 Synechococcus sp. JA-3-3Ab 3898799 YP_475617.1 CDS CYA_2215 NC_007775.1 2228768 2229514 R identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein complement(2228768..2229514) Synechococcus sp. JA-3-3Ab 3898800 YP_475618.1 CDS gshB NC_007775.1 2229715 2230662 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 2229715..2230662 Synechococcus sp. JA-3-3Ab 3898801 YP_475619.1 CDS CYA_2217 NC_007775.1 2231060 2233144 R identified by match to protein family HMM PF02518; match to protein family HMM PF05226; sensor histidine kinase complement(2231060..2233144) Synechococcus sp. JA-3-3Ab 3898802 YP_475620.1 CDS pnpA NC_007775.1 2233250 2235388 R identified by similarity to SP:P50849; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase complement(2233250..2235388) Synechococcus sp. JA-3-3Ab 3898803 YP_475621.1 CDS CYA_2219 NC_007775.1 2235540 2235965 D identified by similarity to GB:BAB51429.1; arylamine N-acetyltransferase, truncation 2235540..2235965 Synechococcus sp. JA-3-3Ab 3898804 YP_475622.1 CDS CYA_2221 NC_007775.1 2237234 2237710 D identified by match to protein family HMM PF01797; ISSoc3, orfA transposase 2237234..2237710 Synechococcus sp. JA-3-3Ab 3898806 YP_475623.1 CDS CYA_2222 NC_007775.1 2237805 2238347 D identified by similarity to GB:CAF05656.1; N-hydroxyarylamine O-acetyltransferase, truncation 2237805..2238347 Synechococcus sp. JA-3-3Ab 3898807 YP_475624.1 CDS leuA NC_007775.1 2238391 2240031 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2238391..2240031 Synechococcus sp. JA-3-3Ab 3898808 YP_475625.1 CDS CYA_2224 NC_007775.1 2240056 2241087 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2240056..2241087) Synechococcus sp. JA-3-3Ab 3898809 YP_475626.1 CDS apcC NC_007775.1 2241220 2241423 R identified by match to protein family HMM PF01383; phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core complement(2241220..2241423) Synechococcus sp. JA-3-3Ab 3898810 YP_475627.1 CDS apcB-2 NC_007775.1 2241564 2242049 R identified by match to protein family HMM PF00502; match to protein family HMM TIGR01337; allophycocyanin subunit beta complement(2241564..2242049) Synechococcus sp. JA-3-3Ab 3898811 YP_475628.1 CDS apcA NC_007775.1 2242110 2242595 R identified by match to protein family HMM PF00502; allophycocyanin subunit alpha complement(2242110..2242595) Synechococcus sp. JA-3-3Ab 3898812 YP_475629.1 CDS CYA_2228 NC_007775.1 2242917 2243624 R hypothetical protein complement(2242917..2243624) Synechococcus sp. JA-3-3Ab 3898813 YP_475630.1 CDS CYA_2229 NC_007775.1 2244162 2245424 D identified by match to protein family HMM PF00089; match to protein family HMM PF00595; S1C family peptidase 2244162..2245424 Synechococcus sp. JA-3-3Ab 3898814 YP_475631.1 CDS CYA_2230 NC_007775.1 2245576 2246475 D identified by similarity to SP:O32243; match to protein family HMM PF04069; quaternary amine ABC transporter substrate-binding protein 2245576..2246475 Synechococcus sp. JA-3-3Ab 3898815 YP_475632.1 CDS CYA_2231 NC_007775.1 2246497 2247465 D identified by similarity to SP:O34992; match to protein family HMM PF00005; quaternary amine ABC transporter ATP-binding protein 2246497..2247465 Synechococcus sp. JA-3-3Ab 3898816 YP_475633.1 CDS CYA_2232 NC_007775.1 2247462 2248079 D identified by match to protein family HMM PF00528; quaternary amine ABC transporter permease 2247462..2248079 Synechococcus sp. JA-3-3Ab 3898817 YP_475634.1 CDS CYA_2233 NC_007775.1 2248277 2248867 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2248277..2248867 Synechococcus sp. JA-3-3Ab 3898818 YP_475635.1 CDS CYA_2234 NC_007775.1 2248888 2249655 D hypothetical protein 2248888..2249655 Synechococcus sp. JA-3-3Ab 3898674 YP_475636.1 CDS CYA_2235 NC_007775.1 2249700 2250320 D VanW family protein 2249700..2250320 Synechococcus sp. JA-3-3Ab 3898675 YP_475637.1 CDS ubiE NC_007775.1 2250414 2251124 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(2250414..2251124) Synechococcus sp. JA-3-3Ab 3898676 YP_475638.1 CDS CYA_2237 NC_007775.1 2251176 2251874 R identified by similarity to GB:BAC07624.1; hypothetical protein complement(2251176..2251874) Synechococcus sp. JA-3-3Ab 3898677 YP_475639.1 CDS CYA_2238 NC_007775.1 2252019 2252297 R hypothetical protein complement(2252019..2252297) Synechococcus sp. JA-3-3Ab 3898678 YP_475640.1 CDS CYA_2239 NC_007775.1 2252345 2252968 R identified by match to protein family HMM PF00132; chloramphenicol acetyltransferase complement(2252345..2252968) Synechococcus sp. JA-3-3Ab 3898679 YP_475641.1 CDS cobU NC_007775.1 2253148 2253711 D catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 2253148..2253711 Synechococcus sp. JA-3-3Ab 3898680 YP_475642.1 CDS CYA_2241 NC_007775.1 2253781 2254269 D hypothetical protein 2253781..2254269 Synechococcus sp. JA-3-3Ab 3898681 YP_475643.1 CDS CYA_2242 NC_007775.1 2254275 2254811 D hypothetical protein 2254275..2254811 Synechococcus sp. JA-3-3Ab 3898682 YP_475644.1 CDS CYA_2243 NC_007775.1 2254932 2255552 R identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481; phosphatidylethanolamine-binding protein complement(2254932..2255552) Synechococcus sp. JA-3-3Ab 3898683 YP_475645.1 CDS CYA_2245 NC_007775.1 2255670 2256086 R identified by similarity to GB:BAC90426.1; hypothetical protein complement(2255670..2256086) Synechococcus sp. JA-3-3Ab 3898685 YP_475646.1 CDS CYA_2246 NC_007775.1 2256083 2256880 R hypothetical protein complement(2256083..2256880) Synechococcus sp. JA-3-3Ab 3898686 YP_475647.1 CDS CYA_2247 NC_007775.1 2256885 2258225 R identified by match to protein family HMM PF01523; tldD/pmbA family protein complement(2256885..2258225) Synechococcus sp. JA-3-3Ab 3898687 YP_475648.1 CDS CYA_2248 NC_007775.1 2258238 2258726 R hypothetical protein complement(2258238..2258726) Synechococcus sp. JA-3-3Ab 3898688 YP_475649.1 CDS CYA_2249 NC_007775.1 2258727 2260007 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase complement(2258727..2260007) Synechococcus sp. JA-3-3Ab 3898689 YP_475650.1 CDS CYA_2250 NC_007775.1 2259862 2260479 R identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase complement(2259862..2260479) Synechococcus sp. JA-3-3Ab 3898690 YP_475651.1 CDS CYA_2251 NC_007775.1 2260534 2260992 R hypothetical protein complement(2260534..2260992) Synechococcus sp. JA-3-3Ab 3898691 YP_475652.1 CDS CYA_2252 NC_007775.1 2261008 2262468 R identified by match to protein family HMM PF01523; U62 family peptidase complement(2261008..2262468) Synechococcus sp. JA-3-3Ab 3898780 YP_475653.1 CDS CYA_2253 NC_007775.1 2262759 2263379 D identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758; uracil-DNA glycosylase 2262759..2263379 Synechococcus sp. JA-3-3Ab 3898781 YP_475654.1 CDS CYA_2254 NC_007775.1 2263460 2264308 R identified by match to protein family HMM PF01209; match to protein family HMM PF02353; cyclopropane-fatty-acyl-phospholipid synthase family protein complement(2263460..2264308) Synechococcus sp. JA-3-3Ab 3898782 YP_475655.1 CDS CYA_2255 NC_007775.1 2264334 2264471 R hypothetical protein complement(2264334..2264471) Synechococcus sp. JA-3-3Ab 3898783 YP_475656.1 CDS CYA_2256 NC_007775.1 2264431 2266038 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 2264431..2266038 Synechococcus sp. JA-3-3Ab 3898784 YP_475657.1 CDS rbsK NC_007775.1 2266059 2266988 R identified by similarity to SP:P05054; match to protein family HMM PF00294; match to protein family HMM TIGR02152; ribokinase complement(2266059..2266988) Synechococcus sp. JA-3-3Ab 3898785 YP_475658.1 CDS CYA_2258 NC_007775.1 2267109 2267420 D identified by similarity to SP:Q8YU66; match to protein family HMM PF01906; hypothetical protein 2267109..2267420 Synechococcus sp. JA-3-3Ab 3898786 YP_475659.1 CDS CYA_2259 NC_007775.1 2267426 2268175 R identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein complement(2267426..2268175) Synechococcus sp. JA-3-3Ab 3898787 YP_475660.1 CDS CYA_2261 NC_007775.1 2268264 2268362 D hypothetical protein 2268264..2268362 Synechococcus sp. JA-3-3Ab 3898788 YP_475661.1 CDS CYA_2260 NC_007775.1 2268271 2269023 R hypothetical protein complement(2268271..2269023) Synechococcus sp. JA-3-3Ab 3898789 YP_475662.1 CDS CYA_2263 NC_007775.1 2269213 2269932 D hypothetical protein 2269213..2269932 Synechococcus sp. JA-3-3Ab 3898790 YP_475663.1 CDS CYA_2262 NC_007775.1 2269929 2272094 R identified by similarity to GB:AAL58474.1; match to protein family HMM PF00069; protein kinase complement(2269929..2272094) Synechococcus sp. JA-3-3Ab 3898791 YP_475664.1 CDS ppnK NC_007775.1 2272522 2273481 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2272522..2273481 Synechococcus sp. JA-3-3Ab 3898792 YP_475665.1 CDS CYA_2265 NC_007775.1 2273668 2274876 R identified by similarity to GB:CAD78920.1; match to protein family HMM PF01882; hypothetical protein complement(2273668..2274876) Synechococcus sp. JA-3-3Ab 3898793 YP_475666.1 CDS CYA_2266 NC_007775.1 2274972 2276132 R identified by match to protein family HMM PF01041; match to protein family HMM PF01212; DegT/DnrJ/EryC1/StrS aminotransferase family protein complement(2274972..2276132) Synechococcus sp. JA-3-3Ab 3898794 YP_475667.1 CDS CYA_2267 NC_007775.1 2276671 2277645 D identified by match to protein family HMM PF01075; heptosyltransferase family protein 2276671..2277645 Synechococcus sp. JA-3-3Ab 3898795 YP_475668.1 CDS CYA_2269 NC_007775.1 2278032 2279024 R identified by match to protein family HMM PF01551; M23B family peptidase complement(2278032..2279024) Synechococcus sp. JA-3-3Ab 3898797 YP_475669.1 CDS CYA_2270 NC_007775.1 2279028 2279849 R identified by similarity to SP:P42975; match to protein family HMM PF03099; match to protein family HMM TIGR00121; biotin--acetyl-CoA-carboxylase ligase complement(2279028..2279849) Synechococcus sp. JA-3-3Ab 3898798 YP_475670.1 CDS CYA_2271 NC_007775.1 2279868 2280500 R identified by similarity to PIR:AI2367; hypothetical protein complement(2279868..2280500) Synechococcus sp. JA-3-3Ab 3898762 YP_475671.1 CDS pdxJ NC_007775.1 2280497 2281234 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(2280497..2281234) Synechococcus sp. JA-3-3Ab 3898763 YP_475672.1 CDS CYA_2273 NC_007775.1 2281403 2282470 D general secretory pathway protein 2281403..2282470 Synechococcus sp. JA-3-3Ab 3898764 YP_475673.1 CDS CYA_2274 NC_007775.1 2282600 2282914 R hypothetical protein complement(2282600..2282914) Synechococcus sp. JA-3-3Ab 3898765 YP_475674.1 CDS lepB NC_007775.1 2283075 2283761 D identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 2283075..2283761 Synechococcus sp. JA-3-3Ab 3898766 YP_475675.1 CDS sds NC_007775.1 2283777 2284748 R identified by similarity to SP:P72580; match to protein family HMM PF00348; match to protein family HMM TIGR02749; solanesyl diphosphate synthase complement(2283777..2284748) Synechococcus sp. JA-3-3Ab 3898767 YP_475676.1 CDS CYA_2277 NC_007775.1 2284760 2285257 D identified by similarity to PIR:S76074; match to protein family HMM PF02583; hypothetical protein 2284760..2285257 Synechococcus sp. JA-3-3Ab 3898768 YP_475677.1 CDS CYA_2278 NC_007775.1 2285309 2285746 R hypothetical protein complement(2285309..2285746) Synechococcus sp. JA-3-3Ab 3898769 YP_475678.1 CDS rpsP NC_007775.1 2285985 2286452 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 2285985..2286452 Synechococcus sp. JA-3-3Ab 3898770 YP_475679.1 CDS CYA_2280 NC_007775.1 2286516 2286776 D hypothetical protein 2286516..2286776 Synechococcus sp. JA-3-3Ab 3898771 YP_475680.1 CDS CYA_2281 NC_007775.1 2286773 2287876 D hypothetical protein 2286773..2287876 Synechococcus sp. JA-3-3Ab 3898772 YP_475681.1 CDS hisF NC_007775.1 2287904 2288665 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2287904..2288665 Synechococcus sp. JA-3-3Ab 3898773 YP_475682.1 CDS cysQ NC_007775.1 2288683 2289480 D identified by match to protein family HMM PF00459; match to protein family HMM TIGR01331; 3'(2'),5'-bisphosphate nucleotidase 2288683..2289480 Synechococcus sp. JA-3-3Ab 3898774 YP_475683.1 CDS CYA_2284 NC_007775.1 2289492 2289956 R identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein complement(2289492..2289956) Synechococcus sp. JA-3-3Ab 3898775 YP_475684.1 CDS CYA_2285 NC_007775.1 2290125 2290898 R identified by match to protein family HMM PF04012; pspA/IM30 family protein complement(2290125..2290898) Synechococcus sp. JA-3-3Ab 3898776 YP_475685.1 CDS CYA_2288 NC_007775.1 2291664 2291807 D hypothetical protein 2291664..2291807 Synechococcus sp. JA-3-3Ab 3898779 YP_475686.1 CDS CYA_2289 NC_007775.1 2291817 2293013 R identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein complement(2291817..2293013) Synechococcus sp. JA-3-3Ab 3898724 YP_475687.1 CDS CYA_2290 NC_007775.1 2293258 2293686 D identified by match to protein family HMM PF01475; FUR family transcriptional regulator 2293258..2293686 Synechococcus sp. JA-3-3Ab 3898725 YP_475688.1 CDS CYA_2291 NC_007775.1 2293751 2295856 R identified by similarity to PIR:AB1961; match to protein family HMM PF03190; hypothetical protein complement(2293751..2295856) Synechococcus sp. JA-3-3Ab 3898726 YP_475689.1 CDS CYA_2292 NC_007775.1 2295979 2296602 R identified by match to protein family HMM PF00583; acetyltransferase complement(2295979..2296602) Synechococcus sp. JA-3-3Ab 3898727 YP_475690.1 CDS CYA_2293 NC_007775.1 2296553 2297020 R identified by match to protein family HMM PF03364; cyclase/dehydrase complement(2296553..2297020) Synechococcus sp. JA-3-3Ab 3898728 YP_475691.1 CDS CYA_2295 NC_007775.1 2297213 2298082 D identified by similarity to PIR:AC2026; match to protein family HMM PF04367; hypothetical protein 2297213..2298082 Synechococcus sp. JA-3-3Ab 3898729 YP_475692.1 CDS CYA_2294 NC_007775.1 2298079 2298411 R identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase domain-containing protein complement(2298079..2298411) Synechococcus sp. JA-3-3Ab 3898730 YP_475693.1 CDS aroA NC_007775.1 2298436 2299770 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(2298436..2299770) Synechococcus sp. JA-3-3Ab 3898731 YP_475694.1 CDS mraW NC_007775.1 2300104 2301033 D identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 2300104..2301033 Synechococcus sp. JA-3-3Ab 3898732 YP_475695.1 CDS CYA_2299 NC_007775.1 2301138 2301674 D identified by similarity to GB:BAD79226.1; hypothetical protein 2301138..2301674 Synechococcus sp. JA-3-3Ab 3898733 YP_475696.1 CDS CYA_2298 NC_007775.1 2301671 2302414 R identified by match to protein family HMM PF00072; response regulator complement(2301671..2302414) Synechococcus sp. JA-3-3Ab 3898734 YP_475697.1 CDS tyrA NC_007775.1 2302545 2303405 R identified by similarity to SP:P20692; match to protein family HMM PF02153; match to protein family HMM PF02254; match to protein family HMM PF02558; match to protein family HMM PF03446; match to protein family HMM PF03807; prephenate dehydrogenase complement(2302545..2303405) Synechococcus sp. JA-3-3Ab 3898735 YP_475698.1 CDS CYA_2301 NC_007775.1 2303622 2304125 D hypothetical protein 2303622..2304125 Synechococcus sp. JA-3-3Ab 3898736 YP_475699.1 CDS scpA NC_007775.1 2304173 2304928 R identified by match to protein family HMM PF02616; segregation and condensation protein A complement(2304173..2304928) Synechococcus sp. JA-3-3Ab 3898737 YP_475700.1 CDS CYA_2304 NC_007775.1 2305896 2306984 R identified by match to protein family HMM PF07995; glucose/sorbosone dehydrogenase family protein complement(2305896..2306984) Synechococcus sp. JA-3-3Ab 3898739 YP_475701.1 CDS CYA_2306 NC_007775.1 2307197 2309632 D identified by match to protein family HMM PF01055; glycosyl hydrolase family protein 2307197..2309632 Synechococcus sp. JA-3-3Ab 3898740 YP_475702.1 CDS CYA_2305 NC_007775.1 2309629 2310096 R identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein complement(2309629..2310096) Synechococcus sp. JA-3-3Ab 3898741 YP_475703.1 CDS CYA_2312 NC_007775.1 2315321 2315851 R identified by match to protein family HMM PF00072; response regulator complement(2315321..2315851) Synechococcus sp. JA-3-3Ab 3898714 YP_475704.1 CDS CYA_2313 NC_007775.1 2315836 2317419 R hypothetical protein complement(2315836..2317419) Synechococcus sp. JA-3-3Ab 3898715 YP_475705.1 CDS CYA_2314 NC_007775.1 2317558 2317836 R hypothetical protein complement(2317558..2317836) Synechococcus sp. JA-3-3Ab 3898716 YP_475706.1 CDS CYA_2315 NC_007775.1 2318279 2319127 D ABC transporter ATP-binding protein 2318279..2319127 Synechococcus sp. JA-3-3Ab 3898717 YP_475707.1 CDS CYA_2316 NC_007775.1 2319170 2319889 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(2319170..2319889) Synechococcus sp. JA-3-3Ab 3898718 YP_475708.1 CDS CYA_2317 NC_007775.1 2320184 2320645 D hypothetical protein 2320184..2320645 Synechococcus sp. JA-3-3Ab 3898719 YP_475709.1 CDS CYA_2318 NC_007775.1 2320813 2321619 D hypothetical protein 2320813..2321619 Synechococcus sp. JA-3-3Ab 3898720 YP_475710.1 CDS CYA_2319 NC_007775.1 2321826 2322668 D identified by similarity to GB:BAC08972.1; hypothetical protein 2321826..2322668 Synechococcus sp. JA-3-3Ab 3898721 YP_475711.1 CDS CYA_2320 NC_007775.1 2322726 2323265 D hypothetical protein 2322726..2323265 Synechococcus sp. JA-3-3Ab 3898722 YP_475712.1 CDS CYA_2321 NC_007775.1 2323268 2323912 D catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 2323268..2323912 Synechococcus sp. JA-3-3Ab 3898723 YP_475713.1 CDS cbiQ NC_007775.1 2323899 2324714 D identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454; cobalt ABC transporter permease CbiQ 2323899..2324714 Synechococcus sp. JA-3-3Ab 3897320 YP_475714.1 CDS yliG NC_007775.1 2324913 2326232 D identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; MiaB tRNA modifying enzyme-like protein 2324913..2326232 Synechococcus sp. JA-3-3Ab 3897321 YP_475715.1 CDS rpiA NC_007775.1 2326263 2326955 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 2326263..2326955 Synechococcus sp. JA-3-3Ab 3897322 YP_475716.1 CDS pdxA NC_007775.1 2326912 2327961 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(2326912..2327961) Synechococcus sp. JA-3-3Ab 3897323 YP_475717.1 CDS CYA_2326 NC_007775.1 2329476 2330453 D identified by similarity to SP:P51266; match to protein family HMM PF02779; match to protein family HMM PF02780; dehydrogenase, E1 component subunit beta 2329476..2330453 Synechococcus sp. JA-3-3Ab 3897324 YP_475718.1 CDS CYA_2328 NC_007775.1 2331574 2332773 D identified by match to protein family HMM PF01266; oxidoreductase, FAD-binding 2331574..2332773 Synechococcus sp. JA-3-3Ab 3897540 YP_475719.1 CDS dnaG NC_007775.1 2332788 2334683 R synthesizes RNA primers at the replication forks; DNA primase complement(2332788..2334683) Synechococcus sp. JA-3-3Ab 3897541 YP_475720.1 CDS petJ NC_007775.1 2334829 2335176 D identified by similarity to SP:P28596; match to protein family HMM PF00034; cytochrome c6 2334829..2335176 Synechococcus sp. JA-3-3Ab 3897542 YP_475721.1 CDS CYA_2331 NC_007775.1 2335176 2335523 D hypothetical protein 2335176..2335523 Synechococcus sp. JA-3-3Ab 3897543 YP_475722.1 CDS CYA_2332 NC_007775.1 2335568 2336134 D identified by match to protein family HMM PF07987; nuclear export factor GLE1-like protein 2335568..2336134 Synechococcus sp. JA-3-3Ab 3897544 YP_475723.1 CDS copCD NC_007775.1 2336152 2337768 D identified by match to protein family HMM PF04234; copper resistance protein C/D 2336152..2337768 Synechococcus sp. JA-3-3Ab 3897545 YP_475724.1 CDS CYA_2333 NC_007775.1 2337765 2340623 R identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07719; TPR repeat- and protein kinase domain-containing protein complement(2337765..2340623) Synechococcus sp. JA-3-3Ab 3897546 YP_475725.1 CDS CYA_2335 NC_007775.1 2340708 2341106 R identified by similarity to PIR:AF2318; hypothetical protein complement(2340708..2341106) Synechococcus sp. JA-3-3Ab 3897547 YP_475726.1 CDS CYA_2336 NC_007775.1 2341359 2342393 D identified by match to protein family HMM PF00072; match to protein family HMM PF01966; match to protein family HMM TIGR00277; response regulator 2341359..2342393 Synechococcus sp. JA-3-3Ab 3897548 YP_475727.1 CDS CYA_2337 NC_007775.1 2342432 2342749 D identified by similarity to GB:BAD80264.1; match to protein family HMM PF04296; hypothetical protein 2342432..2342749 Synechococcus sp. JA-3-3Ab 3897549 YP_475728.1 CDS infB NC_007775.1 2343138 2346233 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 2343138..2346233 Synechococcus sp. JA-3-3Ab 3897550 YP_475729.1 CDS proS NC_007775.1 2346336 2348165 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 2346336..2348165 Synechococcus sp. JA-3-3Ab 3897551 YP_475730.1 CDS CYA_2340 NC_007775.1 2348187 2348804 D hypothetical protein 2348187..2348804 Synechococcus sp. JA-3-3Ab 3897552 YP_475731.1 CDS CYA_2341 NC_007775.1 2348801 2349076 D hypothetical protein 2348801..2349076 Synechococcus sp. JA-3-3Ab 3897553 YP_475732.1 CDS CYA_2342 NC_007775.1 2349173 2350231 R hypothetical protein complement(2349173..2350231) Synechococcus sp. JA-3-3Ab 3897554 YP_475733.1 CDS CYA_2343 NC_007775.1 2350437 2350862 R identified by match to protein family HMM PF07282; ISSoc1, transposase, truncation complement(2350437..2350862) Synechococcus sp. JA-3-3Ab 3897555 YP_475734.1 CDS CYA_2344 NC_007775.1 2350926 2351390 R hypothetical protein complement(2350926..2351390) Synechococcus sp. JA-3-3Ab 3897556 YP_475735.1 CDS CYA_2345 NC_007775.1 2351600 2351728 D hypothetical protein 2351600..2351728 Synechococcus sp. JA-3-3Ab 3897557 YP_475736.1 CDS tkt NC_007775.1 2352095 2354095 R identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232; transketolase complement(2352095..2354095) Synechococcus sp. JA-3-3Ab 3897558 YP_475737.1 CDS lipA-3 NC_007775.1 2354507 2355397 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 2354507..2355397 Synechococcus sp. JA-3-3Ab 3897634 YP_475738.1 CDS CYA_2348 NC_007775.1 2356031 2356699 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2356031..2356699) Synechococcus sp. JA-3-3Ab 3897635 YP_475739.1 CDS CYA_2349 NC_007775.1 2357019 2357912 D identified by match to protein family HMM PF00487; fatty acid desaturase 2357019..2357912 Synechococcus sp. JA-3-3Ab 3897636 YP_475740.1 CDS CYA_2350 NC_007775.1 2358244 2358513 R hypothetical protein complement(2358244..2358513) Synechococcus sp. JA-3-3Ab 3897637 YP_475741.1 CDS CYA_2351 NC_007775.1 2358672 2358935 R identified by match to protein family HMM PF00196; LuxR family transcriptional regulator complement(2358672..2358935) Synechococcus sp. JA-3-3Ab 3897638 YP_475742.1 CDS CYA_2352 NC_007775.1 2359086 2360345 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(2359086..2360345) Synechococcus sp. JA-3-3Ab 3897639 YP_475743.1 CDS CYA_2353 NC_007775.1 2360426 2361190 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase complement(2360426..2361190) Synechococcus sp. JA-3-3Ab 3897640 YP_475744.1 CDS CYA_2355 NC_007775.1 2362620 2363096 D identified by match to protein family HMM PF01797; ISSoc3, orfA transposase 2362620..2363096 Synechococcus sp. JA-3-3Ab 3897642 YP_475745.1 CDS panE-2 NC_007775.1 2363124 2364110 R identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03807; match to protein family HMM TIGR00745; 2-dehydropantoate 2-reductase complement(2363124..2364110) Synechococcus sp. JA-3-3Ab 3897643 YP_475746.1 CDS petM NC_007775.1 2364133 2364240 R Ycf31; cytochrome b6-f complex subunit 7; with PetL, PetG and PetN makes up the small subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I; cytochrome b6-f complex subunit PetM complement(2364133..2364240) Synechococcus sp. JA-3-3Ab 3897644 YP_475747.1 CDS psbD-1 NC_007775.1 2364734 2365792 D identified by match to protein family HMM PF00124; match to protein family HMM TIGR01152; photosystem II protein D2 2364734..2365792 Synechococcus sp. JA-3-3Ab 3897645 YP_475748.1 CDS psbC NC_007775.1 2365935 2367356 D identified by match to protein family HMM PF00421; match to protein family HMM TIGR01153; photosystem II 44 kDa subunit reaction center protein 2365935..2367356 Synechococcus sp. JA-3-3Ab 3897646 YP_475749.1 CDS cobW NC_007775.1 2367488 2368546 D identified by match to protein family HMM PF02492; match to protein family HMM PF07683; match to protein family HMM TIGR02475; cobalamin biosynthesis protein CobW 2367488..2368546 Synechococcus sp. JA-3-3Ab 3897647 YP_475750.1 CDS CYA_2361 NC_007775.1 2368608 2369564 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein complement(2368608..2369564) Synechococcus sp. JA-3-3Ab 3897648 YP_475751.1 CDS CYA_2362 NC_007775.1 2369787 2370812 D identified by similarity to SP:P42062; match to protein family HMM PF00528; OppBC ABC transporter family permease 2369787..2370812 Synechococcus sp. JA-3-3Ab 3897649 YP_475752.1 CDS CYA_2363 NC_007775.1 2370850 2373006 D hypothetical protein 2370850..2373006 Synechococcus sp. JA-3-3Ab 3897650 YP_475753.1 CDS CYA_2364 NC_007775.1 2373011 2373751 R hypothetical protein complement(2373011..2373751) Synechococcus sp. JA-3-3Ab 3897651 YP_475754.1 CDS fabD NC_007775.1 2373876 2374745 R identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase complement(2373876..2374745) Synechococcus sp. JA-3-3Ab 3897652 YP_475755.1 CDS fabH NC_007775.1 2374765 2375772 R identified by match to protein family HMM PF02797; match to protein family HMM TIGR00747; 3-oxoacyl-(acyl-carrier-protein) synthase III complement(2374765..2375772) Synechococcus sp. JA-3-3Ab 3897672 YP_475756.1 CDS plsX NC_007775.1 2375778 2376869 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(2375778..2376869) Synechococcus sp. JA-3-3Ab 3897673 YP_475757.1 CDS CYA_2368 NC_007775.1 2377352 2379085 R hypothetical protein complement(2377352..2379085) Synechococcus sp. JA-3-3Ab 3897674 YP_475758.1 CDS trpC NC_007775.1 2379498 2380418 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 2379498..2380418 Synechococcus sp. JA-3-3Ab 3897675 YP_475759.1 CDS CYA_2370 NC_007775.1 2380459 2380698 D hypothetical protein 2380459..2380698 Synechococcus sp. JA-3-3Ab 3897676 YP_475760.1 CDS CYA_2371 NC_007775.1 2380763 2380957 D identified by similarity to PDB:1SB6_A; copper metallochaperone 2380763..2380957 Synechococcus sp. JA-3-3Ab 3897677 YP_475761.1 CDS CYA_2372 NC_007775.1 2381068 2383401 D identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 2381068..2383401 Synechococcus sp. JA-3-3Ab 3897678 YP_475762.1 CDS cbiX NC_007775.1 2383610 2384638 D identified by similarity to SP:O87690; similarity to SP:Q55451; match to protein family HMM PF01903; sirohydrochlorin cobaltochelatase 2383610..2384638 Synechococcus sp. JA-3-3Ab 3897679 YP_475763.1 CDS CYA_2375 NC_007775.1 2384822 2385643 D hypothetical protein 2384822..2385643 Synechococcus sp. JA-3-3Ab 3897680 YP_475764.1 CDS CYA_2374 NC_007775.1 2385640 2386257 R identified by match to protein family HMM PF04755; PAP/fibrillin family protein complement(2385640..2386257) Synechococcus sp. JA-3-3Ab 3897681 YP_475765.1 CDS CYA_2376 NC_007775.1 2386313 2387020 R identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein complement(2386313..2387020) Synechococcus sp. JA-3-3Ab 3897682 YP_475766.1 CDS CYA_2377 NC_007775.1 2387042 2387377 R identified by similarity to PIR:AH2287; hypothetical protein complement(2387042..2387377) Synechococcus sp. JA-3-3Ab 3897683 YP_475767.1 CDS obgE NC_007775.1 2387352 2388509 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(2387352..2388509) Synechococcus sp. JA-3-3Ab 3897684 YP_475768.1 CDS rpsA NC_007775.1 2388710 2389681 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2388710..2389681 Synechococcus sp. JA-3-3Ab 3897685 YP_475769.1 CDS CYA_2380 NC_007775.1 2389689 2389793 D hypothetical protein 2389689..2389793 Synechococcus sp. JA-3-3Ab 3897686 YP_475770.1 CDS CYA_2381 NC_007775.1 2389808 2391094 D identified by match to protein family HMM PF07508; resolvase family site-specific recombinase 2389808..2391094 Synechococcus sp. JA-3-3Ab 3897687 YP_475771.1 CDS chlL NC_007775.1 2391460 2392311 D light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production; protochlorophyllide reductase iron-sulfur ATP-binding protein 2391460..2392311 Synechococcus sp. JA-3-3Ab 3897688 YP_475772.1 CDS CYA_2383 NC_007775.1 2392470 2393447 D Converts chlorophyllide a into protochlorophyllide; light dependent; protochlorophyllide oxidoreductase 2392470..2393447 Synechococcus sp. JA-3-3Ab 3897689 YP_475773.1 CDS chlN NC_007775.1 2393477 2394877 D light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit N 2393477..2394877 Synechococcus sp. JA-3-3Ab 3897690 YP_475774.1 CDS CYA_2384 NC_007775.1 2394874 2395110 R hypothetical protein complement(2394874..2395110) Synechococcus sp. JA-3-3Ab 3897691 YP_475775.1 CDS hemL NC_007775.1 2395186 2396496 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(2395186..2396496) Synechococcus sp. JA-3-3Ab 3898472 YP_475776.1 CDS ispG NC_007775.1 2396575 2397813 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2396575..2397813) Synechococcus sp. JA-3-3Ab 3898473 YP_475777.1 CDS CYA_2388 NC_007775.1 2398539 2399060 R identified by similarity to PIR:S77403; match to protein family HMM PF02577; hypothetical protein complement(2398539..2399060) Synechococcus sp. JA-3-3Ab 3898474 YP_475778.1 CDS cobK NC_007775.1 2399147 2399950 D CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 2399147..2399950 Synechococcus sp. JA-3-3Ab 3898475 YP_475779.1 CDS CYA_2389 NC_007775.1 2399908 2400264 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(2399908..2400264) Synechococcus sp. JA-3-3Ab 3898476 YP_475780.1 CDS CYA_2391 NC_007775.1 2400637 2402787 D Catalyzes the transfer of electrons from NADH to ubiquinone; NAD(P)H-quinone oxidoreductase subunit F 2400637..2402787 Synechococcus sp. JA-3-3Ab 3898477 YP_475781.1 CDS CYA_2392 NC_007775.1 2402868 2403461 D identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 2402868..2403461 Synechococcus sp. JA-3-3Ab 3898478 YP_475782.1 CDS CYA_2393 NC_007775.1 2403316 2404596 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 2403316..2404596 Synechococcus sp. JA-3-3Ab 3898479 YP_475783.1 CDS CYA_2394 NC_007775.1 2405090 2405869 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(2405090..2405869) Synechococcus sp. JA-3-3Ab 3898480 YP_475784.1 CDS fni NC_007775.1 2405868 2407043 D catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 2405868..2407043 Synechococcus sp. JA-3-3Ab 3898481 YP_475785.1 CDS CYA_2396 NC_007775.1 2407304 2408917 R hypothetical protein complement(2407304..2408917) Synechococcus sp. JA-3-3Ab 3898482 YP_475786.1 CDS CYA_2398 NC_007775.1 2409118 2409318 R hypothetical protein complement(2409118..2409318) Synechococcus sp. JA-3-3Ab 3898484 YP_475787.1 CDS CYA_2399 NC_007775.1 2409290 2409985 R identified by similarity to GB:BAD78649.1; hypothetical protein complement(2409290..2409985) Synechococcus sp. JA-3-3Ab 3898485 YP_475788.1 CDS CYA_2400 NC_007775.1 2410282 2410488 D hypothetical protein 2410282..2410488 Synechococcus sp. JA-3-3Ab 3898486 YP_475789.1 CDS CYA_2401 NC_007775.1 2410355 2412211 D identified by similarity to GB:AAD48483.1; match to protein family HMM PF00082; S8A family peptidase 2410355..2412211 Synechococcus sp. JA-3-3Ab 3898487 YP_475790.1 CDS CYA_2402 NC_007775.1 2412211 2412432 D hypothetical protein 2412211..2412432 Synechococcus sp. JA-3-3Ab 3898488 YP_475791.1 CDS CYA_2403 NC_007775.1 2412534 2412893 R identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein complement(2412534..2412893) Synechococcus sp. JA-3-3Ab 3898489 YP_475792.1 CDS CYA_2405 NC_007775.1 2414646 2415662 R identified by match to protein family HMM PF00211; match to protein family HMM PF00498; adenylate cyclase complement(2414646..2415662) Synechococcus sp. JA-3-3Ab 3898491 YP_475793.1 CDS CYA_2406 NC_007775.1 2415796 2416281 D identified by similarity to GB:BAC88790.1; match to protein family HMM PF06799; hypothetical protein 2415796..2416281 Synechococcus sp. JA-3-3Ab 3898492 YP_475794.1 CDS ribF NC_007775.1 2416329 2417261 D identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; riboflavin biosynthesis protein RibF 2416329..2417261 Synechococcus sp. JA-3-3Ab 3898493 YP_475795.1 CDS cobS NC_007775.1 2417309 2418088 R catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase complement(2417309..2418088) Synechococcus sp. JA-3-3Ab 3898494 YP_475796.1 CDS CYA_2409 NC_007775.1 2418121 2418465 R identified by similarity to GB:BAC88059.1; hypothetical protein complement(2418121..2418465) Synechococcus sp. JA-3-3Ab 3898495 YP_475797.1 CDS rpoD NC_007775.1 2418526 2419740 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(2418526..2419740) Synechococcus sp. JA-3-3Ab 3898496 YP_475798.1 CDS metH NC_007775.1 2420392 2424051 D identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082; methionine synthase 2420392..2424051 Synechococcus sp. JA-3-3Ab 3898497 YP_475799.1 CDS potC NC_007775.1 2424056 2424829 R identified by similarity to SP:P23859; match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease PotC complement(2424056..2424829) Synechococcus sp. JA-3-3Ab 3898498 YP_475800.1 CDS CYA_2413 NC_007775.1 2425128 2425949 R identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase complement(2425128..2425949) Synechococcus sp. JA-3-3Ab 3898499 YP_475801.1 CDS CYA_2414 NC_007775.1 2426047 2426199 R hypothetical protein complement(2426047..2426199) Synechococcus sp. JA-3-3Ab 3898500 YP_475802.1 CDS CYA_2415 NC_007775.1 2426212 2426688 R identified by match to protein family HMM PF01797; ISSoc3, orfA transposase complement(2426212..2426688) Synechococcus sp. JA-3-3Ab 3898501 YP_475803.1 CDS CYA_2417 NC_007775.1 2427961 2428911 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(2427961..2428911) Synechococcus sp. JA-3-3Ab 3898503 YP_475804.1 CDS CYA_2418 NC_007775.1 2429181 2429828 R hypothetical protein complement(2429181..2429828) Synechococcus sp. JA-3-3Ab 3898504 YP_475805.1 CDS yqeG NC_007775.1 2430090 2430578 R identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01668; HAD family phosphatase complement(2430090..2430578) Synechococcus sp. JA-3-3Ab 3898505 YP_475806.1 CDS CYA_2420 NC_007775.1 2430622 2431743 R identified by similarity to GB:CAG37649.1; match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein complement(2430622..2431743) Synechococcus sp. JA-3-3Ab 3898506 YP_475807.1 CDS pyrH NC_007775.1 2431864 2432628 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(2431864..2432628) Synechococcus sp. JA-3-3Ab 3898507 YP_475808.1 CDS CYA_2422 NC_007775.1 2432727 2432879 R identified by similarity to PIR:S77143; hypothetical protein complement(2432727..2432879) Synechococcus sp. JA-3-3Ab 3898508 YP_475809.1 CDS CYA_2423 NC_007775.1 2432987 2433358 R identified by match to protein family HMM PF01169; hypothetical protein complement(2432987..2433358) Synechococcus sp. JA-3-3Ab 3898604 YP_475810.1 CDS CYA_2424 NC_007775.1 2433346 2434626 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase complement(2433346..2434626) Synechococcus sp. JA-3-3Ab 3898605 YP_475811.1 CDS CYA_2425 NC_007775.1 2434481 2435074 R identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase complement(2434481..2435074) Synechococcus sp. JA-3-3Ab 3898606 YP_475812.1 CDS psbJ NC_007775.1 2436836 2436955 R may be involved in assembling and maintaining PSII complexes in the thylakoid membrane; photosystem II reaction center protein J complement(2436836..2436955) Synechococcus sp. JA-3-3Ab 3898608 YP_475813.1 CDS psbL NC_007775.1 2437096 2437221 R identified by match to protein family HMM PF02419; photosystem II reaction center protein PsbL complement(2437096..2437221) Synechococcus sp. JA-3-3Ab 3898609 YP_475814.1 CDS psbF NC_007775.1 2437227 2437370 R photosystem II reaction center subunit VI; associated with the reaction center of photosystem II; cytochrome b559 subunit beta complement(2437227..2437370) Synechococcus sp. JA-3-3Ab 3898610 YP_475815.1 CDS psbE NC_007775.1 2437454 2437699 R photosystem II reaction center subunit VI; associated with the reaction center of photosystem II; cytochrome b559 subunit alpha complement(2437454..2437699) Synechococcus sp. JA-3-3Ab 3898611 YP_475816.1 CDS CYA_2431 NC_007775.1 2438016 2439716 D S-layer protein 2438016..2439716 Synechococcus sp. JA-3-3Ab 3898612 YP_475817.1 CDS CYA_2432 NC_007775.1 2440022 2441761 R identified by similarity to GB:AAD29107.1; match to protein family HMM PF01966; match to protein family HMM PF02541; exopolyphosphatase complement(2440022..2441761) Synechococcus sp. JA-3-3Ab 3898613 YP_475818.1 CDS thrS NC_007775.1 2441939 2443750 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2441939..2443750 Synechococcus sp. JA-3-3Ab 3898614 YP_475819.1 CDS CYA_2434 NC_007775.1 2443789 2444127 D carbohydrate ABC transporter ATP-binding protein 2443789..2444127 Synechococcus sp. JA-3-3Ab 3898615 YP_475820.1 CDS CYA_2435 NC_007775.1 2444148 2445353 D identified by match to protein family HMM PF03069; acetamidase/formamidase family protein 2444148..2445353 Synechococcus sp. JA-3-3Ab 3898616 YP_475821.1 CDS CYA_2437 NC_007775.1 2445984 2447531 D identified by match to protein family HMM PF00005; carbohydrate ABC transporter ATP-binding protein 2445984..2447531 Synechococcus sp. JA-3-3Ab 3898617 YP_475822.1 CDS malQ NC_007775.1 2447528 2449129 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(2447528..2449129) Synechococcus sp. JA-3-3Ab 3898618 YP_475823.1 CDS pyrE NC_007775.1 2449285 2449941 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(2449285..2449941) Synechococcus sp. JA-3-3Ab 3898619 YP_475824.1 CDS CYA_2439 NC_007775.1 2450193 2450786 D identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 2450193..2450786 Synechococcus sp. JA-3-3Ab 3898620 YP_475825.1 CDS CYA_2440 NC_007775.1 2450641 2451921 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 2450641..2451921 Synechococcus sp. JA-3-3Ab 3898621 YP_475826.1 CDS CYA_2441 NC_007775.1 2451933 2452448 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(2451933..2452448) Synechococcus sp. JA-3-3Ab 3898622 YP_475827.1 CDS CYA_2442 NC_007775.1 2452624 2452761 R hypothetical protein complement(2452624..2452761) Synechococcus sp. JA-3-3Ab 3898623 YP_475828.1 CDS CYA_2444 NC_007775.1 2452833 2454146 D hypothetical protein 2452833..2454146 Synechococcus sp. JA-3-3Ab 3898624 YP_475829.1 CDS CYA_2443 NC_007775.1 2454051 2454224 R hypothetical protein complement(2454051..2454224) Synechococcus sp. JA-3-3Ab 3898625 YP_475830.1 CDS yfiA NC_007775.1 2454482 2455057 R identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein complement(2454482..2455057) Synechococcus sp. JA-3-3Ab 3898626 YP_475831.1 CDS CYA_2446 NC_007775.1 2455787 2457031 D identified by similarity to GB:AAB99854.1; match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM PF06838; aluminium resistance protein 2455787..2457031 Synechococcus sp. JA-3-3Ab 3898627 YP_475832.1 CDS CYA_2447 NC_007775.1 2457021 2457923 D hypothetical protein 2457021..2457923 Synechococcus sp. JA-3-3Ab 3898628 YP_475833.1 CDS CYA_2448 NC_007775.1 2458260 2458475 D hypothetical protein 2458260..2458475 Synechococcus sp. JA-3-3Ab 3898629 YP_475834.1 CDS CYA_2449 NC_007775.1 2458518 2458820 D identified by match to protein family HMM PF03647; hypothetical protein 2458518..2458820 Synechococcus sp. JA-3-3Ab 3898630 YP_475835.1 CDS CYA_2450 NC_007775.1 2458904 2459488 R identified by similarity to GB:CAA62019.1; S-layer protein complement(2458904..2459488) Synechococcus sp. JA-3-3Ab 3898631 YP_475836.1 CDS CYA_2451 NC_007775.1 2459537 2459743 R hypothetical protein complement(2459537..2459743) Synechococcus sp. JA-3-3Ab 3898632 YP_475837.1 CDS CYA_2453 NC_007775.1 2459752 2460189 D identified by match to protein family HMM PF07719; hypothetical protein 2459752..2460189 Synechococcus sp. JA-3-3Ab 3898633 YP_475838.1 CDS CYA_2452 NC_007775.1 2460170 2460364 R hypothetical protein complement(2460170..2460364) Synechococcus sp. JA-3-3Ab 3898634 YP_475839.1 CDS thrC-2 NC_007775.1 2460477 2461535 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(2460477..2461535) Synechococcus sp. JA-3-3Ab 3898635 YP_475840.1 CDS CYA_2455 NC_007775.1 2461689 2463218 R identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543; isochorismate synthase complement(2461689..2463218) Synechococcus sp. JA-3-3Ab 3898636 YP_475841.1 CDS menA NC_007775.1 2463470 2464447 D catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 2463470..2464447 Synechococcus sp. JA-3-3Ab 3898637 YP_475842.1 CDS CYA_2457 NC_007775.1 2464589 2466427 D hypothetical protein 2464589..2466427 Synechococcus sp. JA-3-3Ab 3898638 YP_475843.1 CDS CYA_2458 NC_007775.1 2466505 2467683 D identified by match to protein family HMM PF03739; YjgP/YjgQ family protein 2466505..2467683 Synechococcus sp. JA-3-3Ab 3898639 YP_475844.1 CDS CYA_2459 NC_007775.1 2467680 2471015 D hypothetical protein 2467680..2471015 Synechococcus sp. JA-3-3Ab 3898640 YP_475845.1 CDS CYA_2460 NC_007775.1 2471113 2472348 D catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis; L,L-diaminopimelate aminotransferase 2471113..2472348 Synechococcus sp. JA-3-3Ab 3898641 YP_475846.1 CDS CYA_2461 NC_007775.1 2472469 2473437 D identified by match to protein family HMM PF01118; match to protein family HMM PF01408; oxidoreductase, NAD-binding 2472469..2473437 Synechococcus sp. JA-3-3Ab 3898642 YP_475847.1 CDS CYA_2462 NC_007775.1 2473466 2474020 R identified by similarity to PIR:JC7085; iron-sulfur cluster-binding protein complement(2473466..2474020) Synechococcus sp. JA-3-3Ab 3898214 YP_475848.1 CDS CYA_2463 NC_007775.1 2474013 2474291 R identified by similarity to PIR:AB1982; hypothetical protein complement(2474013..2474291) Synechococcus sp. JA-3-3Ab 3898215 YP_475849.1 CDS CYA_2464 NC_007775.1 2474426 2474977 R identified by similarity to SP:Q55024; match to protein family HMM PF00210; DNA protection protein complement(2474426..2474977) Synechococcus sp. JA-3-3Ab 3898216 YP_475850.1 CDS CYA_2465 NC_007775.1 2475226 2476479 D identified by match to protein family HMM PF01926; GTP-binding protein 2475226..2476479 Synechococcus sp. JA-3-3Ab 3898217 YP_475851.1 CDS CYA_2466 NC_007775.1 2476487 2477509 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(2476487..2477509) Synechococcus sp. JA-3-3Ab 3898218 YP_475852.1 CDS hslO NC_007775.1 2477559 2478521 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(2477559..2478521) Synechococcus sp. JA-3-3Ab 3898219 YP_475853.1 CDS CYA_2468 NC_007775.1 2478895 2479182 D hypothetical protein 2478895..2479182 Synechococcus sp. JA-3-3Ab 3898220 YP_475854.1 CDS CYA_2469 NC_007775.1 2479464 2479952 D identified by match to protein family HMM PF01398; Mov34/MPN/PAD-1 family protein 2479464..2479952 Synechococcus sp. JA-3-3Ab 3898221 YP_475855.1 CDS CYA_2470 NC_007775.1 2480163 2480444 D identified by match to protein family HMM PF02597; ThiS domain-containing protein 2480163..2480444 Synechococcus sp. JA-3-3Ab 3898222 YP_475856.1 CDS CYA_2471 NC_007775.1 2480447 2481610 D identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; hypothetical protein 2480447..2481610 Synechococcus sp. JA-3-3Ab 3898223 YP_475857.1 CDS ribAB NC_007775.1 2481734 2483035 D identified by similarity to SP:P17620; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00506; riboflavin biosynthesis protein RibA 2481734..2483035 Synechococcus sp. JA-3-3Ab 3898224 YP_475858.1 CDS CYA_2472 NC_007775.1 2483024 2483449 R hypothetical protein complement(2483024..2483449) Synechococcus sp. JA-3-3Ab 3898225 YP_475859.1 CDS CYA_2474 NC_007775.1 2483586 2484572 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(2483586..2484572) Synechococcus sp. JA-3-3Ab 3898226 YP_475860.1 CDS CYA_2476 NC_007775.1 2486028 2486582 D identified by match to protein family HMM PF07681; DoxX family protein 2486028..2486582 Synechococcus sp. JA-3-3Ab 3898228 YP_475861.1 CDS ppk NC_007775.1 2486621 2488672 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(2486621..2488672) Synechococcus sp. JA-3-3Ab 3898229 YP_475862.1 CDS CYA_2478 NC_007775.1 2488854 2489813 R identified by match to protein family HMM PF02653; hydrophobic amino acid ABC transporter permease complement(2488854..2489813) Synechococcus sp. JA-3-3Ab 3898230 YP_475863.1 CDS CYA_2479 NC_007775.1 2489813 2490670 R identified by similarity to SP:P08340; match to protein family HMM PF02653; hydrophobic amino acid ABC transporter permease complement(2489813..2490670) Synechococcus sp. JA-3-3Ab 3898231 YP_475864.1 CDS CYA_2480 NC_007775.1 2490776 2491777 D lipoprotein 2490776..2491777 Synechococcus sp. JA-3-3Ab 3898232 YP_475865.1 CDS CYA_2481 NC_007775.1 2491860 2493524 D identified by similarity to GB:AAF72520.1; match to protein family HMM PF00884; sulfatase 2491860..2493524 Synechococcus sp. JA-3-3Ab 3898233 YP_475866.1 CDS CYA_2482 NC_007775.1 2493528 2494016 R hypothetical protein complement(2493528..2494016) Synechococcus sp. JA-3-3Ab 3897711 YP_475867.1 CDS fabG NC_007775.1 2494430 2495191 D identified by match to protein family HMM PF00106; match to protein family HMM TIGR01830; 3-oxoacyl-(acyl-carrier-protein) reductase 2494430..2495191 Synechococcus sp. JA-3-3Ab 3897712 YP_475868.1 CDS ggt NC_007775.1 2495197 2496843 R identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066; gamma-glutamyltransferase complement(2495197..2496843) Synechococcus sp. JA-3-3Ab 3897713 YP_475869.1 CDS CYA_2485 NC_007775.1 2496881 2497573 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD family hydrolase complement(2496881..2497573) Synechococcus sp. JA-3-3Ab 3897714 YP_475870.1 CDS CYA_2486 NC_007775.1 2497673 2498335 R identified by similarity to PIR:AG2426; match to protein family HMM PF05728; hypothetical protein complement(2497673..2498335) Synechococcus sp. JA-3-3Ab 3897715 YP_475871.1 CDS secG NC_007775.1 2498350 2498589 R identified by similarity to SP:P33582; match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG complement(2498350..2498589) Synechococcus sp. JA-3-3Ab 3897716 YP_475872.1 CDS CYA_2488 NC_007775.1 2499093 2499383 D hypothetical protein 2499093..2499383 Synechococcus sp. JA-3-3Ab 3897717 YP_475873.1 CDS panB NC_007775.1 2499425 2500210 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(2499425..2500210) Synechococcus sp. JA-3-3Ab 3897718 YP_475874.1 CDS pcyA NC_007775.1 2500691 2501431 D catalyzes the reduction of biliverdin IX-alpha producing (3Z)-phycocyanobilin and oxidized ferredoxin; phycocyanobilin:ferredoxin oxidoreductase 2500691..2501431 Synechococcus sp. JA-3-3Ab 3897720 YP_475875.1 CDS CYA_2491 NC_007775.1 2501428 2502273 R hypothetical protein complement(2501428..2502273) Synechococcus sp. JA-3-3Ab 3897721 YP_475876.1 CDS prmA NC_007775.1 2502828 2503613 D identified by match to protein family HMM PF01170; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM TIGR00406; 50S ribosomal protein L11 methyltransferase 2502828..2503613 Synechococcus sp. JA-3-3Ab 3897722 YP_475877.1 CDS CYA_2494 NC_007775.1 2503583 2504401 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 2503583..2504401 Synechococcus sp. JA-3-3Ab 3897723 YP_475878.1 CDS hisS NC_007775.1 2504482 2505741 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2504482..2505741 Synechococcus sp. JA-3-3Ab 3897724 YP_475879.1 CDS CYA_2496 NC_007775.1 2505749 2507278 D hypothetical protein 2505749..2507278 Synechococcus sp. JA-3-3Ab 3897725 YP_475880.1 CDS CYA_2497 NC_007775.1 2507293 2508129 R identified by match to protein family HMM PF00582; universal stress protein complement(2507293..2508129) Synechococcus sp. JA-3-3Ab 3897726 YP_475881.1 CDS CYA_2498 NC_007775.1 2508231 2509130 R hypothetical protein complement(2508231..2509130) Synechococcus sp. JA-3-3Ab 3897727 YP_475882.1 CDS CYA_2499 NC_007775.1 2509159 2510295 R lipoprotein complement(2509159..2510295) Synechococcus sp. JA-3-3Ab 3897728 YP_475883.1 CDS CYA_2500 NC_007775.1 2510292 2511791 R hypothetical protein complement(2510292..2511791) Synechococcus sp. JA-3-3Ab 3897786 YP_475884.1 CDS CYA_2501 NC_007775.1 2512198 2512599 D identified by match to protein family HMM PF01050; match to protein family HMM PF07883; mannose-6-phosphate isomerase family protein 2512198..2512599 Synechococcus sp. JA-3-3Ab 3897787 YP_475885.1 CDS CYA_2502 NC_007775.1 2512762 2514654 D hypothetical protein 2512762..2514654 Synechococcus sp. JA-3-3Ab 3897788 YP_475886.1 CDS CYA_2503 NC_007775.1 2515200 2517008 D identified by match to protein family HMM PF00535; match to protein family HMM PF05157; glycosyl transferase 2515200..2517008 Synechococcus sp. JA-3-3Ab 3897789 YP_475887.1 CDS CYA_2504 NC_007775.1 2517066 2517425 R hypothetical protein complement(2517066..2517425) Synechococcus sp. JA-3-3Ab 3897790 YP_475888.1 CDS CYA_2505 NC_007775.1 2517430 2517528 D hypothetical protein 2517430..2517528 Synechococcus sp. JA-3-3Ab 3897791 YP_475889.1 CDS phoD NC_007775.1 2517680 2519407 R identified by match to protein family HMM PF00245; alkaline phosphatase complement(2517680..2519407) Synechococcus sp. JA-3-3Ab 3897792 YP_475890.1 CDS clpS-2 NC_007775.1 2519672 2519953 D identified by match to protein family HMM PF02617; ATP-dependent Clp protease adaptor protein ClpS 2519672..2519953 Synechococcus sp. JA-3-3Ab 3897793 YP_475891.1 CDS CYA_2509 NC_007775.1 2519969 2520763 D identified by match to protein family HMM PF02517; CAAX amino terminal protease family protein 2519969..2520763 Synechococcus sp. JA-3-3Ab 3897794 YP_475892.1 CDS CYA_2508 NC_007775.1 2520713 2520823 R hypothetical protein complement(2520713..2520823) Synechococcus sp. JA-3-3Ab 3897795 YP_475893.1 CDS CYA_2510 NC_007775.1 2520824 2522311 R identified by similarity to SP:P16256; match to protein family HMM PF00474; solute/sodium symporter (SSS) family protein complement(2520824..2522311) Synechococcus sp. JA-3-3Ab 3897796 YP_475894.1 CDS CYA_2511 NC_007775.1 2522304 2522534 R hypothetical protein complement(2522304..2522534) Synechococcus sp. JA-3-3Ab 3897797 YP_475895.1 CDS dprA NC_007775.1 2522681 2523826 D identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA 2522681..2523826 Synechococcus sp. JA-3-3Ab 3897798 YP_475896.1 CDS hisA NC_007775.1 2524851 2525636 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2524851..2525636 Synechococcus sp. JA-3-3Ab 3897799 YP_475897.1 CDS CYA_2514 NC_007775.1 2526051 2527241 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; M20D family peptidase 2526051..2527241 Synechococcus sp. JA-3-3Ab 3897800 YP_475898.1 CDS CYA_2515 NC_007775.1 2527385 2527972 R identified by similarity to PIR:AI2386; hypothetical protein complement(2527385..2527972) Synechococcus sp. JA-3-3Ab 3897801 YP_475899.1 CDS CYA_2516 NC_007775.1 2528172 2529896 R identified by similarity to GB:BAC07803.1; match to protein family HMM PF01935; hypothetical protein complement(2528172..2529896) Synechococcus sp. JA-3-3Ab 3897802 YP_475900.1 CDS CYA_2517 NC_007775.1 2529896 2530489 R hypothetical protein complement(2529896..2530489) Synechococcus sp. JA-3-3Ab 3897803 YP_475901.1 CDS CYA_2518 NC_007775.1 2530486 2531679 R hypothetical protein complement(2530486..2531679) Synechococcus sp. JA-3-3Ab 3897804 YP_475902.1 CDS CYA_2519 NC_007775.1 2531669 2535265 R identified by match to protein family HMM PF02463; RecF/RecN/SMC domain-containing protein complement(2531669..2535265) Synechococcus sp. JA-3-3Ab 3897805 YP_475903.1 CDS CYA_2520 NC_007775.1 2535268 2536536 R identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein complement(2535268..2536536) Synechococcus sp. JA-3-3Ab 3899949 YP_475904.1 CDS psaA NC_007775.1 2536947 2539214 D with PsaB binds the primary electron donor of photosystem I, P700, and subsequent electron acceptors as part of photosystem I; photosystem I P700 chlorophyll a apoprotein A1 2536947..2539214 Synechococcus sp. JA-3-3Ab 3899950 YP_475905.1 CDS psaB NC_007775.1 2539236 2541473 D with PsaA binds the primary electron donor of photosystem I, P700, and subsequent electron acceptors as part of photosystem I; photosystem I P700 chlorophyll a apoprotein A2 2539236..2541473 Synechococcus sp. JA-3-3Ab 3899951 YP_475906.1 CDS CYA_2523 NC_007775.1 2541914 2543251 R hypothetical protein complement(2541914..2543251) Synechococcus sp. JA-3-3Ab 3899952 YP_475907.1 CDS CYA_2524 NC_007775.1 2543742 2544962 D lipoprotein 2543742..2544962 Synechococcus sp. JA-3-3Ab 3899953 YP_475908.1 CDS CYA_2525 NC_007775.1 2545023 2546408 D lipoprotein 2545023..2546408 Synechococcus sp. JA-3-3Ab 3899954 YP_475909.1 CDS CYA_2526 NC_007775.1 2546716 2546826 D hypothetical protein 2546716..2546826 Synechococcus sp. JA-3-3Ab 3899955 YP_475910.1 CDS CYA_2527 NC_007775.1 2546833 2548365 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(2546833..2548365) Synechococcus sp. JA-3-3Ab 3899956 YP_475911.1 CDS CYA_2528 NC_007775.1 2548375 2548476 D hypothetical protein 2548375..2548476 Synechococcus sp. JA-3-3Ab 3899957 YP_475912.1 CDS CYA_2530 NC_007775.1 2548507 2549280 D hypothetical protein 2548507..2549280 Synechococcus sp. JA-3-3Ab 3899958 YP_475913.1 CDS CYA_2529 NC_007775.1 2549277 2550113 R identified by similarity to SP:P39832; match to protein family HMM PF00950; manganese/zinc/iron chelate ABC transporter permease complement(2549277..2550113) Synechococcus sp. JA-3-3Ab 3899959 YP_475914.1 CDS CYA_2531 NC_007775.1 2550123 2550893 R identified by similarity to SP:Q55281; match to protein family HMM PF00005; manganese/zinc/iron chelate ABC transporter ATP-binding protein complement(2550123..2550893) Synechococcus sp. JA-3-3Ab 3899960 YP_475915.1 CDS CYA_2532 NC_007775.1 2550890 2551981 R identified by similarity to PDB:1PQ4_A; match to protein family HMM PF01297; zinc ABC transporter, zinc-binding protein complement(2550890..2551981) Synechococcus sp. JA-3-3Ab 3899961 YP_475916.1 CDS CYA_2533 NC_007775.1 2551995 2552438 R identified by match to protein family HMM PF02657; SufE family Fe-S metabolism protein complement(2551995..2552438) Synechococcus sp. JA-3-3Ab 3899962 YP_475917.1 CDS CYA_2534 NC_007775.1 2552549 2553688 R catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase complement(2552549..2553688) Synechococcus sp. JA-3-3Ab 3899963 YP_475918.1 CDS CYA_2535 NC_007775.1 2555487 2555579 D hypothetical protein 2555487..2555579 Synechococcus sp. JA-3-3Ab 3899964 YP_475919.1 CDS CYA_2536 NC_007775.1 2555606 2556028 D identified by similarity to GB:AAU90688.1; match to protein family HMM PF01951; hypothetical protein 2555606..2556028 Synechococcus sp. JA-3-3Ab 3899965 YP_475920.1 CDS CYA_2537 NC_007775.1 2556041 2557471 D identified by similarity to GB:AAU90689.1; match to protein family HMM PF01139; hypothetical protein 2556041..2557471 Synechococcus sp. JA-3-3Ab 3899966 YP_475921.1 CDS CYA_2538 NC_007775.1 2558326 2559216 R identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase complement(2558326..2559216) Synechococcus sp. JA-3-3Ab 3899921 YP_475922.1 CDS cas2-4 NC_007775.1 2559707 2559985 R identified by match to protein family HMM PF02647; match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein complement(2559707..2559985) Synechococcus sp. JA-3-3Ab 3899922 YP_475923.1 CDS CYA_2541 NC_007775.1 2560974 2561273 R hypothetical protein complement(2560974..2561273) Synechococcus sp. JA-3-3Ab 3899924 YP_475924.1 CDS cmr6 NC_007775.1 2561306 2563264 R identified by match to protein family HMM PF03787; CRISPR-associated RAMP Cmr6 family protein complement(2561306..2563264) Synechococcus sp. JA-3-3Ab 3899925 YP_475925.1 CDS CYA_2543 NC_007775.1 2563294 2563935 R identified by similarity to GB:BAC88877.1; match to protein family HMM PF05685; hypothetical protein complement(2563294..2563935) Synechococcus sp. JA-3-3Ab 3899926 YP_475926.1 CDS CYA_2544 NC_007775.1 2563935 2564327 R identified by similarity to GB:BAD01988.1; hypothetical protein complement(2563935..2564327) Synechococcus sp. JA-3-3Ab 3899927 YP_475927.1 CDS cmr4 NC_007775.1 2564341 2565111 R identified by match to protein family HMM PF03787; match to protein family HMM TIGR02580; CRISPR-associated RAMP Cmr4 family protein complement(2564341..2565111) Synechococcus sp. JA-3-3Ab 3899928 YP_475928.1 CDS CYA_2546 NC_007775.1 2565157 2566281 R identified by similarity to GB:BAD01991.1; hypothetical protein complement(2565157..2566281) Synechococcus sp. JA-3-3Ab 3899929 YP_475929.1 CDS crm2-2 NC_007775.1 2566278 2569103 R identified by match to protein family HMM TIGR02577; CRISPR-associated RAMP Crm2 family protein complement(2566278..2569103) Synechococcus sp. JA-3-3Ab 3899882 YP_475930.1 CDS CYA_2548 NC_007775.1 2569518 2570837 R identified by match to protein family HMM TIGR02221; match to protein family HMM TIGR02549; CRISPR-associated TM1812 family protein complement(2569518..2570837) Synechococcus sp. JA-3-3Ab 3899883 YP_475931.1 CDS CYA_2549 NC_007775.1 2570815 2570973 D hypothetical protein 2570815..2570973 Synechococcus sp. JA-3-3Ab 3899884 YP_475932.1 CDS CYA_2550 NC_007775.1 2571016 2571600 D identified by similarity to PIR:S76377; match to protein family HMM PF05685; hypothetical protein 2571016..2571600 Synechococcus sp. JA-3-3Ab 3899885 YP_475933.1 CDS CYA_2551 NC_007775.1 2571628 2572236 D identified by similarity to GB:BAC92021.1; match to protein family HMM PF05685; hypothetical protein 2571628..2572236 Synechococcus sp. JA-3-3Ab 3899886 YP_475934.1 CDS CYA_2552 NC_007775.1 2572193 2572879 D hypothetical protein 2572193..2572879 Synechococcus sp. JA-3-3Ab 3899887 YP_475935.1 CDS CYA_2553 NC_007775.1 2573294 2576749 D identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 2573294..2576749 Synechococcus sp. JA-3-3Ab 3899888 YP_475936.1 CDS CYA_2555 NC_007775.1 2577070 2579121 D identified by similarity to SP:Q06903; match to protein family HMM PF00326; match to protein family HMM PF02897; prolyl oligopeptidase 2577070..2579121 Synechococcus sp. JA-3-3Ab 3899889 YP_475937.1 CDS eno NC_007775.1 2579118 2580416 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(2579118..2580416) Synechococcus sp. JA-3-3Ab 3899890 YP_475938.1 CDS CYA_2556 NC_007775.1 2580599 2581003 D identified by match to protein family HMM PF00582; universal stress protein 2580599..2581003 Synechococcus sp. JA-3-3Ab 3899891 YP_475939.1 CDS CYA_2557 NC_007775.1 2581160 2581519 D identified by match to protein family HMM PF02943; ferredoxin-thioredoxin reductase, catalytic beta subunit 2581160..2581519 Synechococcus sp. JA-3-3Ab 3899892 YP_475940.1 CDS psbX-1 NC_007775.1 2581637 2581753 D identified by match to protein family HMM PF06596; photosystem II reaction center protein PsbX 2581637..2581753 Synechococcus sp. JA-3-3Ab 3899893 YP_475941.1 CDS CYA_2559 NC_007775.1 2581836 2583239 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 2581836..2583239 Synechococcus sp. JA-3-3Ab 3899894 YP_475942.1 CDS CYA_2560 NC_007775.1 2583385 2584767 D involved in light-induced Na+-dependent proton extrusion; proton extrusion protein PcxA 2583385..2584767 Synechococcus sp. JA-3-3Ab 3899895 YP_475943.1 CDS CYA_2561 NC_007775.1 2584772 2584924 D hypothetical protein 2584772..2584924 Synechococcus sp. JA-3-3Ab 3899896 YP_475944.1 CDS CYA_2562 NC_007775.1 2584940 2585527 R hypothetical protein complement(2584940..2585527) Synechococcus sp. JA-3-3Ab 3899897 YP_475945.1 CDS CYA_2563 NC_007775.1 2585536 2587392 R identified by similarity to SP:P77338; match to protein family HMM PF00924; small conductance mechanosensitive ion channel (MscS) family protein complement(2585536..2587392) Synechococcus sp. JA-3-3Ab 3899898 YP_475946.1 CDS uvrB NC_007775.1 2587475 2589562 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(2587475..2589562) Synechococcus sp. JA-3-3Ab 3899899 YP_475947.1 CDS CYA_2565 NC_007775.1 2589764 2590624 R hypothetical protein complement(2589764..2590624) Synechococcus sp. JA-3-3Ab 3899900 YP_475948.1 CDS CYA_2566 NC_007775.1 2590653 2591630 R identified by match to protein family HMM PF02492; match to protein family HMM PF07683; cobalamin biosynthesis protein CobW complement(2590653..2591630) Synechococcus sp. JA-3-3Ab 3899901 YP_475949.1 CDS CYA_2567 NC_007775.1 2591753 2591923 D hypothetical protein 2591753..2591923 Synechococcus sp. JA-3-3Ab 3899807 YP_475950.1 CDS CYA_2568 NC_007775.1 2592635 2593231 R identified by similarity to PIR:AC2473; match to protein family HMM PF06206; hypothetical protein complement(2592635..2593231) Synechococcus sp. JA-3-3Ab 3899808 YP_475951.1 CDS CYA_2570 NC_007775.1 2593699 2594769 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 2593699..2594769 Synechococcus sp. JA-3-3Ab 3899809 YP_475952.1 CDS CYA_2569 NC_007775.1 2594766 2597696 R identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase complement(2594766..2597696) Synechococcus sp. JA-3-3Ab 3899810 YP_475953.1 CDS CYA_2571 NC_007775.1 2597704 2598345 R identified by similarity to SP:Q45461; match to protein family HMM PF00528; quaternary amine ABC transporter permease complement(2597704..2598345) Synechococcus sp. JA-3-3Ab 3899811 YP_475954.1 CDS CYA_2572 NC_007775.1 2598424 2599041 D identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 2598424..2599041 Synechococcus sp. JA-3-3Ab 3899812 YP_475955.1 CDS CYA_2573 NC_007775.1 2598896 2600176 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 2598896..2600176 Synechococcus sp. JA-3-3Ab 3899813 YP_475956.1 CDS CYA_2574 NC_007775.1 2600434 2600940 D identified by similarity to PIR:H90201; hypothetical protein 2600434..2600940 Synechococcus sp. JA-3-3Ab 3899814 YP_475957.1 CDS CYA_2575 NC_007775.1 2600963 2602072 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 2600963..2602072 Synechococcus sp. JA-3-3Ab 3899815 YP_475958.1 CDS CYA_2576 NC_007775.1 2602150 2602755 R identified by match to protein family HMM PF00072; response regulator complement(2602150..2602755) Synechococcus sp. JA-3-3Ab 3899816 YP_475959.1 CDS CYA_2577 NC_007775.1 2602994 2603335 R hypothetical protein complement(2602994..2603335) Synechococcus sp. JA-3-3Ab 3899817 YP_475960.1 CDS CYA_2578 NC_007775.1 2603363 2603584 R hypothetical protein complement(2603363..2603584) Synechococcus sp. JA-3-3Ab 3899818 YP_475961.1 CDS CYA_2579 NC_007775.1 2603693 2604097 R identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein complement(2603693..2604097) Synechococcus sp. JA-3-3Ab 3899819 YP_475962.1 CDS CYA_2580 NC_007775.1 2604256 2604732 R identified by match to protein family HMM PF01797; ISSoc3, orfA transposase complement(2604256..2604732) Synechococcus sp. JA-3-3Ab 3899820 YP_475963.1 CDS CYA_2581 NC_007775.1 2604688 2605959 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc3, orfB transposase 2604688..2605959 Synechococcus sp. JA-3-3Ab 3899821 YP_475964.1 CDS CYA_2582 NC_007775.1 2606279 2608678 D MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 2606279..2608678 Synechococcus sp. JA-3-3Ab 3899822 YP_475965.1 CDS CYA_2583 NC_007775.1 2608723 2608920 R hypothetical protein complement(2608723..2608920) Synechococcus sp. JA-3-3Ab 3899823 YP_475966.1 CDS CYA_2584 NC_007775.1 2608814 2609137 R hypothetical protein complement(2608814..2609137) Synechococcus sp. JA-3-3Ab 3899824 YP_475967.1 CDS CYA_2585 NC_007775.1 2609202 2609414 R identified by similarity to SP:Q07398; urease subunit beta, truncation complement(2609202..2609414) Synechococcus sp. JA-3-3Ab 3899825 YP_475968.1 CDS CYA_2587 NC_007775.1 2610755 2611231 D identified by match to protein family HMM PF01797; ISSoc3, orfA transposase 2610755..2611231 Synechococcus sp. JA-3-3Ab 3899749 YP_475969.1 CDS CYA_2589 NC_007775.1 2611714 2611854 R hypothetical protein complement(2611714..2611854) Synechococcus sp. JA-3-3Ab 3899751 YP_475970.1 CDS hrcA NC_007775.1 2611973 2613151 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 2611973..2613151 Synechococcus sp. JA-3-3Ab 3899752 YP_475971.1 CDS tilS NC_007775.1 2613192 2614202 D identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; tRNA(Ile)-lysidine synthetase 2613192..2614202 Synechococcus sp. JA-3-3Ab 3899753 YP_475972.1 CDS CYA_2592 NC_007775.1 2614376 2615212 R identified by match to protein family HMM TIGR02669; SpoIID/LytB domain-containing protein complement(2614376..2615212) Synechococcus sp. JA-3-3Ab 3899754 YP_475973.1 CDS CYA_2593 NC_007775.1 2615291 2616580 R identified by match to protein family HMM PF07690; drug:H+ antiporter-1 family protein complement(2615291..2616580) Synechococcus sp. JA-3-3Ab 3899755 YP_475974.1 CDS CYA_2594 NC_007775.1 2616763 2617065 D identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 2616763..2617065 Synechococcus sp. JA-3-3Ab 3899756 YP_475975.1 CDS CYA_2595 NC_007775.1 2617089 2617463 R identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP complement(2617089..2617463) Synechococcus sp. JA-3-3Ab 3899757 YP_475976.1 CDS CYA_2596 NC_007775.1 2617489 2617641 D hypothetical protein 2617489..2617641 Synechococcus sp. JA-3-3Ab 3899758 YP_475977.1 CDS CYA_2597 NC_007775.1 2617632 2617844 D identified by similarity to GB:CAE20678.1; hypothetical protein 2617632..2617844 Synechococcus sp. JA-3-3Ab 3899759 YP_475978.1 CDS CYA_2599 NC_007775.1 2619075 2619194 R hypothetical protein complement(2619075..2619194) Synechococcus sp. JA-3-3Ab 3899761 YP_475979.1 CDS psbX-2 NC_007775.1 2619212 2619328 R identified by match to protein family HMM PF06596; photosystem II reaction center protein PsbX complement(2619212..2619328) Synechococcus sp. JA-3-3Ab 3899762 YP_475980.1 CDS CYA_2601 NC_007775.1 2619425 2619778 R identified by match to protein family HMM PF02943; ferredoxin-thioredoxin reductase, catalytic beta subunit complement(2619425..2619778) Synechococcus sp. JA-3-3Ab 3899763 YP_475981.1 CDS CYA_2603 NC_007775.1 2620696 2621439 R identified by similarity to SP:P73883; hypothetical protein complement(2620696..2621439) Synechococcus sp. JA-3-3Ab 3899765 YP_475982.1 CDS CYA_2604 NC_007775.1 2621611 2623191 R identified by match to protein family HMM PF00421; match to protein family HMM PF02605; PsbB/PsbC family photosystem II protein complement(2621611..2623191) Synechococcus sp. JA-3-3Ab 3899766 YP_475983.1 CDS CYA_2605 NC_007775.1 2623240 2623749 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(2623240..2623749) Synechococcus sp. JA-3-3Ab 3899767 YP_475984.1 CDS CYA_2606 NC_007775.1 2623806 2624840 R identified by similarity to SP:P48187; match to protein family HMM PF00421; PsbB/PsbC family photosystem II protein complement(2623806..2624840) Synechococcus sp. JA-3-3Ab 3899671 YP_475985.1 CDS CYA_2607 NC_007775.1 2625026 2625205 R hypothetical protein complement(2625026..2625205) Synechococcus sp. JA-3-3Ab 3899672 YP_475986.1 CDS CYA_2608 NC_007775.1 2625231 2626463 D identified by similarity to SP:P12608; iron-regulated protein A 2625231..2626463 Synechococcus sp. JA-3-3Ab 3899673 YP_475988.1 CDS CYA_2612 NC_007775.1 2627221 2628156 D identified by match to protein family HMM PF06537; hypothetical protein 2627221..2628156 Synechococcus sp. JA-3-3Ab 3899676 YP_475989.1 CDS CYA_2611 NC_007775.1 2628153 2628827 R identified by match to protein family HMM PF03171; hydroxylase complement(2628153..2628827) Synechococcus sp. JA-3-3Ab 3899677 YP_475990.1 CDS CYA_2613 NC_007775.1 2629189 2629848 D hypothetical protein 2629189..2629848 Synechococcus sp. JA-3-3Ab 3899678 YP_475991.1 CDS CYA_2614 NC_007775.1 2630177 2630953 R hypothetical protein complement(2630177..2630953) Synechococcus sp. JA-3-3Ab 3899679 YP_475992.1 CDS CYA_2615 NC_007775.1 2631196 2631858 R identified by similarity to PIR:AC2428; hypothetical protein complement(2631196..2631858) Synechococcus sp. JA-3-3Ab 3899680 YP_475993.1 CDS mutL NC_007775.1 2632185 2633936 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 2632185..2633936 Synechococcus sp. JA-3-3Ab 3899681 YP_475994.1 CDS CYA_2617 NC_007775.1 2633965 2634822 D identified by match to protein family HMM PF07884; VKORC1/thioredoxin domain-containing protein 2633965..2634822 Synechococcus sp. JA-3-3Ab 3899682 YP_475995.1 CDS CYA_2618 NC_007775.1 2635110 2636108 R identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator complement(2635110..2636108) Synechococcus sp. JA-3-3Ab 3899683 YP_475996.1 CDS btpA NC_007775.1 2636271 2637158 R identified by similarity to SP:P72966; match to protein family HMM PF03437; match to protein family HMM TIGR00259; photosystem I biogenesis protein BtpA complement(2636271..2637158) Synechococcus sp. JA-3-3Ab 3899684 YP_475997.1 CDS pyrD NC_007775.1 2637171 2638301 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(2637171..2638301) Synechococcus sp. JA-3-3Ab 3899685 YP_475998.1 CDS CYA_2621 NC_007775.1 2638449 2639702 R identified by similarity to SP:P21175; match to protein family HMM PF01094; match to protein family HMM TIGR01409; hydrophobic amino acid ABC transporter amino acid-binding protein complement(2638449..2639702) Synechococcus sp. JA-3-3Ab 3899686 YP_475999.1 CDS CYA_2622 NC_007775.1 2639930 2640748 D identified by match to protein family HMM PF00005; hydrophobic amino acid ABC transporter ATP-binding protein 2639930..2640748 Synechococcus sp. JA-3-3Ab 3899687 YP_476000.1 CDS CYA_2623 NC_007775.1 2640745 2641452 D identified by match to protein family HMM PF00005; hydrophobic amino acid ABC transporter ATP-binding protein 2640745..2641452 Synechococcus sp. JA-3-3Ab 3899688 YP_476001.1 CDS recN NC_007775.1 2641479 2643185 R identified by match to protein family HMM TIGR00634; DNA repair protein RecN complement(2641479..2643185) Synechococcus sp. JA-3-3Ab 3899689 YP_476002.1 CDS CYA_2625 NC_007775.1 2643258 2643572 R hypothetical protein complement(2643258..2643572) Synechococcus sp. JA-3-3Ab 3899615 YP_476003.1 CDS CYA_2627 NC_007775.1 2643684 2644310 D identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093; RNA pseudouridine synthase family protein 2643684..2644310 Synechococcus sp. JA-3-3Ab 3899616 YP_476004.1 CDS hisB NC_007775.1 2644293 2644913 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(2644293..2644913) Synechococcus sp. JA-3-3Ab 3899617 YP_476005.1 CDS CYA_2628 NC_007775.1 2645144 2646559 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614; ATP-dependent DNA helicase RecQ 2645144..2646559 Synechococcus sp. JA-3-3Ab 3899618 YP_476006.1 CDS CYA_2629 NC_007775.1 2646700 2648472 D identified by match to protein family HMM PF00933; glycosyl hydrolase domain-containing protein 2646700..2648472 Synechococcus sp. JA-3-3Ab 3899619 YP_476007.1 CDS CYA_2630 NC_007775.1 2648737 2649054 D identified by match to protein family HMM PF00034; cytochrome c family protein 2648737..2649054 Synechococcus sp. JA-3-3Ab 3899620 YP_476008.1 CDS CYA_2631 NC_007775.1 2649064 2649741 D identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 2649064..2649741 Synechococcus sp. JA-3-3Ab 3899621 YP_476009.1 CDS CYA_2632 NC_007775.1 2649785 2650144 R hypothetical protein complement(2649785..2650144) Synechococcus sp. JA-3-3Ab 3899622 YP_476010.1 CDS CYA_2633 NC_007775.1 2650477 2650803 R identified by similarity to SP:P06966; DNA-binding protein complement(2650477..2650803) Synechococcus sp. JA-3-3Ab 3899623 YP_476011.1 CDS CYA_2634 NC_007775.1 2650912 2651022 R hypothetical protein complement(2650912..2651022) Synechococcus sp. JA-3-3Ab 3899624 YP_476012.1 CDS CYA_2635 NC_007775.1 2651108 2652193 D identified by similarity to PIR:S70834; match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02393; RNA polymerase sigma factor, group 1 2651108..2652193 Synechococcus sp. JA-3-3Ab 3899625 YP_476013.1 CDS CYA_2636 NC_007775.1 2652298 2653569 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc3, orfB transposase complement(2652298..2653569) Synechococcus sp. JA-3-3Ab 3899626 YP_529504.1 CDS CYA_2638 NC_007775.1 2653525 2653755 D This gene is disrupted by an insertion of an ISSoc4 element.; ISSoc3, orfA transposase, interruption-N 2653525..2653755 Synechococcus sp. JA-3-3Ab 3899627 YP_476014.1 CDS CYA_2637 NC_007775.1 2653693 2654259 R identified by similarity to GB:AAC97587.1; ISSoc4, transposase orfB complement(2653693..2654259) Synechococcus sp. JA-3-3Ab 3899628 YP_476015.1 CDS CYA_2639 NC_007775.1 2654241 2654639 R identified by similarity to PIR:AD2038; ISSoc4, transposase orfA complement(2654241..2654639) Synechococcus sp. JA-3-3Ab 3899629 YP_529505.1 CDS CYA_2640 NC_007775.1 2654705 2655019 D This gene is disrupted by an insertion of an ISSoc4 element.; identified by match to protein family HMM PF01797; ISSoc3, orfA transposase, interruption-C 2654705..2655019 Synechococcus sp. JA-3-3Ab 3969018 YP_476017.1 CDS CYA_2642 NC_007775.1 2656899 2658311 R identified by match to protein family HMM PF03092; match to protein family HMM PF07690; match to protein family HMM TIGR00788; folate-biopterin transporter (FBT) family protein complement(2656899..2658311) Synechococcus sp. JA-3-3Ab 3899631 YP_476018.1 CDS rph NC_007775.1 2658593 2659321 D identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966; ribonuclease PH 2658593..2659321 Synechococcus sp. JA-3-3Ab 3899632 YP_476019.1 CDS CYA_2644 NC_007775.1 2659824 2661062 D identified by match to protein family HMM PF00072; response regulator 2659824..2661062 Synechococcus sp. JA-3-3Ab 3899633 YP_476020.1 CDS ribE NC_007775.1 2661088 2661723 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2661088..2661723 Synechococcus sp. JA-3-3Ab 3899634 YP_476021.1 CDS aroK NC_007775.1 2661750 2662319 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 2661750..2662319 Synechococcus sp. JA-3-3Ab 3899577 YP_476022.1 CDS psbD-2 NC_007775.1 2662397 2663455 R identified by match to protein family HMM PF00124; match to protein family HMM TIGR01152; photosystem II protein D2 complement(2662397..2663455) Synechococcus sp. JA-3-3Ab 3899578 YP_476023.1 CDS glgA NC_007775.1 2663700 2665154 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 2663700..2665154 Synechococcus sp. JA-3-3Ab 3899579 YP_476024.1 CDS CYA_2650 NC_007775.1 2665281 2665898 D hypothetical protein 2665281..2665898 Synechococcus sp. JA-3-3Ab 3899580 YP_476025.1 CDS CYA_2649 NC_007775.1 2665895 2666446 R identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; methyltransferase complement(2665895..2666446) Synechococcus sp. JA-3-3Ab 3899581 YP_476026.1 CDS CYA_2651 NC_007775.1 2666452 2667342 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein complement(2666452..2667342) Synechococcus sp. JA-3-3Ab 3899582 YP_476027.1 CDS CYA_2652 NC_007775.1 2667403 2668245 R identified by match to protein family HMM PF02985; match to protein family HMM PF03130; HEAT repeat-containing PBS lyase complement(2667403..2668245) Synechococcus sp. JA-3-3Ab 3899583 YP_476028.1 CDS CYA_2653 NC_007775.1 2668683 2671094 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM PF08148; DEAD/DEAH box helicase complement(2668683..2671094) Synechococcus sp. JA-3-3Ab 3899584 YP_476029.1 CDS trpG NC_007775.1 2671274 2671909 D identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566; anthranilate synthase component II 2671274..2671909 Synechococcus sp. JA-3-3Ab 3899585 YP_476030.1 CDS CYA_2655 NC_007775.1 2671900 2672670 D metallo-beta-lactamase superfamily hydrolase 2671900..2672670 Synechococcus sp. JA-3-3Ab 3899586 YP_476031.1 CDS CYA_2656 NC_007775.1 2672675 2673235 D identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 2672675..2673235 Synechococcus sp. JA-3-3Ab 3899587 YP_476032.1 CDS CYA_2657 NC_007775.1 2673243 2674238 R Hypusine is a modified amino acid found in eukarya and archaea, but as yet unknown in prokarya.; identified by match to protein family HMM PF01916; deoxyhypusine synthase family protein complement(2673243..2674238) Synechococcus sp. JA-3-3Ab 3899588 YP_476033.1 CDS bioB NC_007775.1 2674363 2675295 D identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase 2674363..2675295 Synechococcus sp. JA-3-3Ab 3899589 YP_476034.1 CDS CYA_2659 NC_007775.1 2675506 2677509 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 2675506..2677509 Synechococcus sp. JA-3-3Ab 3899590 YP_476035.1 CDS CYA_2660 NC_007775.1 2677542 2678036 D hypothetical protein 2677542..2678036 Synechococcus sp. JA-3-3Ab 3899591 YP_476036.1 CDS CYA_2661 NC_007775.1 2677850 2678146 D hypothetical protein 2677850..2678146 Synechococcus sp. JA-3-3Ab 3899592 YP_476037.1 CDS CYA_2662 NC_007775.1 2678156 2679193 R identified by match to protein family HMM PF00571; match to protein family HMM PF01595; hypothetical protein complement(2678156..2679193) Synechococcus sp. JA-3-3Ab 3899593 YP_476038.1 CDS panC/cmk NC_007775.1 2679390 2681012 R catalyzes the formation of pantothenate from pantoate and beta-alanine and the formation of cytidine diphosphate from cytidine monophosphate; bifunctional pantoate ligase/cytidylate kinase complement(2679390..2681012) Synechococcus sp. JA-3-3Ab 3899594 YP_476039.1 CDS petG NC_007775.1 2681084 2681197 R cytochrome b6-f complex subunit 5; plastohydroquinone/plastocyanin oxidoreductase; with PetL, PetM and PetN makes up the small subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I; cytochrome b6-f complex subunit PetG complement(2681084..2681197) Synechococcus sp. JA-3-3Ab 3899595 YP_476040.1 CDS menE NC_007775.1 2681420 2682826 D identified by match to protein family HMM PF00501; match to protein family HMM TIGR01923; O-succinylbenzoic acid--CoA ligase 2681420..2682826 Synechococcus sp. JA-3-3Ab 3899522 YP_476041.1 CDS CYA_2665 NC_007775.1 2682823 2683404 R identified by match to protein family HMM PF00226; match to protein family HMM PF07719; DnaJ domain-containing protein complement(2682823..2683404) Synechococcus sp. JA-3-3Ab 3899523 YP_476042.1 CDS CYA_2667 NC_007775.1 2683755 2684510 D identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 2683755..2684510 Synechococcus sp. JA-3-3Ab 3899524 YP_476043.1 CDS CYA_2668 NC_007775.1 2685242 2685592 D hypothetical protein 2685242..2685592 Synechococcus sp. JA-3-3Ab 3899525 YP_476044.1 CDS CYA_2669 NC_007775.1 2685650 2685847 R hypothetical protein complement(2685650..2685847) Synechococcus sp. JA-3-3Ab 3899526 YP_476045.1 CDS CYA_2670 NC_007775.1 2685875 2686795 D identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771; L-lactate dehydrogenase 2685875..2686795 Synechococcus sp. JA-3-3Ab 3899527 YP_476046.1 CDS trmB NC_007775.1 2686875 2687585 D identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091; tRNA (guanine-N(7)-)-methyltransferase 2686875..2687585 Synechococcus sp. JA-3-3Ab 3899528 YP_476047.1 CDS CYA_2672 NC_007775.1 2687653 2689266 D identified by match to protein family HMM PF02517; CAAX amino terminal protease family protein 2687653..2689266 Synechococcus sp. JA-3-3Ab 3899529 YP_476048.1 CDS CYA_2673 NC_007775.1 2689279 2690304 R identified by match to protein family HMM PF00226; match to protein family HMM PF07719; DnaJ domain-containing protein complement(2689279..2690304) Synechococcus sp. JA-3-3Ab 3899530 YP_476049.1 CDS CYA_2674 NC_007775.1 2690262 2691098 R identified by similarity to SP:P02911; match to protein family HMM PF00497; polar amino acid ABC transporter (PAAT) family, amino acid-binding protein complement(2690262..2691098) Synechococcus sp. JA-3-3Ab 3899531 YP_476050.1 CDS CYA_2675 NC_007775.1 2691230 2692081 R identified by match to protein family HMM PF00459; inositol monophosphatase family protein complement(2691230..2692081) Synechococcus sp. JA-3-3Ab 3899532 YP_476051.1 CDS CYA_2676 NC_007775.1 2692424 2693002 D identified by match to protein family HMM PF00498; FHA domain-containing protein 2692424..2693002 Synechococcus sp. JA-3-3Ab 3899533 YP_476052.1 CDS cobQ NC_007775.1 2693306 2694793 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 2693306..2694793 Synechococcus sp. JA-3-3Ab 3899535 YP_476053.1 CDS galE NC_007775.1 2694862 2695872 D identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 2694862..2695872 Synechococcus sp. JA-3-3Ab 3899536 YP_476054.1 CDS cutA NC_007775.1 2695944 2696279 D identified by similarity to SP:P36654; match to protein family HMM PF03091; divalent-cation tolerance protein CutA 2695944..2696279 Synechococcus sp. JA-3-3Ab 3899537 YP_476055.1 CDS coaD NC_007775.1 2696302 2696781 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 2696302..2696781 Synechococcus sp. JA-3-3Ab 3899538 YP_476056.1 CDS CYA_2682 NC_007775.1 2696798 2697196 R identified by similarity to PIR:S75155; hypothetical protein complement(2696798..2697196) Synechococcus sp. JA-3-3Ab 3899539 YP_476057.1 CDS CYA_2683 NC_007775.1 2697360 2698538 D identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345; arsenite-antimonite transporter ArsAB 2697360..2698538 Synechococcus sp. JA-3-3Ab 3899540 YP_476058.1 CDS CYA_2684 NC_007775.1 2698806 2699423 D identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 2698806..2699423 Synechococcus sp. JA-3-3Ab 3899446 YP_476059.1 CDS CYA_2685 NC_007775.1 2699278 2700558 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 2699278..2700558 Synechococcus sp. JA-3-3Ab 3899447 YP_476060.1 CDS gid NC_007775.1 2700632 2701987 D TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 2700632..2701987 Synechococcus sp. JA-3-3Ab 3899448 YP_476061.1 CDS ackA NC_007775.1 2703599 2704810 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2703599..2704810 Synechococcus sp. JA-3-3Ab 3899450 YP_476062.1 CDS CYA_2689 NC_007775.1 2704985 2705455 D hypothetical protein 2704985..2705455 Synechococcus sp. JA-3-3Ab 3899451 YP_476063.1 CDS CYA_2690 NC_007775.1 2705996 2706538 D identified by match to protein family HMM PF00498; FHA domain-containing protein 2705996..2706538 Synechococcus sp. JA-3-3Ab 3899452 YP_476064.1 CDS CYA_2691 NC_007775.1 2706562 2706690 R hypothetical protein complement(2706562..2706690) Synechococcus sp. JA-3-3Ab 3899453 YP_476065.1 CDS CYA_2692 NC_007775.1 2706717 2708738 D identified by match to protein family HMM PF00498; FHA domain-containing protein 2706717..2708738 Synechococcus sp. JA-3-3Ab 3899454 YP_476066.1 CDS CYA_2693 NC_007775.1 2708985 2709437 D identified by similarity to PIR:AD2030; hypothetical protein 2708985..2709437 Synechococcus sp. JA-3-3Ab 3899455 YP_476067.1 CDS CYA_2694 NC_007775.1 2709546 2710163 D identified by match to protein family HMM PF00239; match to protein family HMM PF00376; ISSoc2, resolvase 2709546..2710163 Synechococcus sp. JA-3-3Ab 3899456 YP_476068.1 CDS CYA_2695 NC_007775.1 2710018 2711283 D identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISSoc2, transposase 2710018..2711283 Synechococcus sp. JA-3-3Ab 3899457 YP_476069.1 CDS CYA_2696 NC_007775.1 2711745 2712014 D identified by similarity to SP:Q8Z0I8; match to protein family HMM PF04025; hypothetical protein 2711745..2712014 Synechococcus sp. JA-3-3Ab 3899458 YP_476070.1 CDS gmk NC_007775.1 2712109 2712762 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 2712109..2712762 Synechococcus sp. JA-3-3Ab 3899459 YP_476071.1 CDS CYA_2699 NC_007775.1 2714420 2715112 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2714420..2715112 Synechococcus sp. JA-3-3Ab 3899461 YP_476072.1 CDS lgt-2 NC_007775.1 2715285 2716424 D identified by similarity to SP:O34752; match to protein family HMM PF01790; match to protein family HMM TIGR00544; prolipoprotein diacylglyceryl transferase 2715285..2716424 Synechococcus sp. JA-3-3Ab 3899462 YP_476073.1 CDS CYA_2702 NC_007775.1 2718426 2719907 R identified by match to protein family HMM PF02163; M50 family peptidase complement(2718426..2719907) Synechococcus sp. JA-3-3Ab 3899464 YP_476074.1 CDS acsF NC_007775.1 2719954 2721045 R oxidative; catalyzes the formation of divinylprotochlorophyllide from magnesium-protoporphyrin IX 13-monomethyl ester in isocyclic ring formation in chlorophyll biosynthesis; magnesium-protoporphyrin IX monomethyl ester cyclase complement(2719954..2721045) Synechococcus sp. JA-3-3Ab 3899354 YP_476075.1 CDS gltS NC_007775.1 2721145 2725752 R identified by similarity to SP:P55038; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898; ferredoxin-dependent glutamate synthase complement(2721145..2725752) Synechococcus sp. JA-3-3Ab 3899355 YP_476076.1 CDS CYA_2705 NC_007775.1 2725833 2725967 R hypothetical protein complement(2725833..2725967) Synechococcus sp. JA-3-3Ab 3899356 YP_476077.1 CDS CYA_2706 NC_007775.1 2726041 2726886 R hypothetical protein complement(2726041..2726886) Synechococcus sp. JA-3-3Ab 3899357 YP_476078.1 CDS CYA_2707 NC_007775.1 2727113 2727310 D hypothetical protein 2727113..2727310 Synechococcus sp. JA-3-3Ab 3899358 YP_476079.1 CDS CYA_2708 NC_007775.1 2727385 2728404 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR01188; drug exporter ABC transporter ATP-binding protein 2727385..2728404 Synechococcus sp. JA-3-3Ab 3899359 YP_476080.1 CDS CYA_2709 NC_007775.1 2728530 2728928 D identified by similarity to PIR:AD2038; ISSoc4, transposase orfA 2728530..2728928 Synechococcus sp. JA-3-3Ab 3899360 YP_476081.1 CDS CYA_2710 NC_007775.1 2728910 2729476 D identified by similarity to GB:AAC97587.1; ISSoc4, transposase orfB 2728910..2729476 Synechococcus sp. JA-3-3Ab 3899361 YP_476082.1 CDS CYA_2711 NC_007775.1 2729586 2730440 D identified by match to protein family HMM PF01061; drug exporter ABC transporter permease 2729586..2730440 Synechococcus sp. JA-3-3Ab 3899362 YP_476083.1 CDS CYA_2712 NC_007775.1 2730464 2730679 R hypothetical protein complement(2730464..2730679) Synechococcus sp. JA-3-3Ab 3899363 YP_476084.1 CDS CYA_2713 NC_007775.1 2730798 2731442 D identified by similarity to PIR:AB2392; hypothetical protein 2730798..2731442 Synechococcus sp. JA-3-3Ab 3899364 YP_476085.1 CDS CYA_2714 NC_007775.1 2731625 2734870 R identified by match to protein family HMM PF01590; match to protein family HMM PF02518; GAF domain/histidine kinase domain-containing protein complement(2731625..2734870) Synechococcus sp. JA-3-3Ab 3899365 YP_476086.1 CDS gltX NC_007775.1 2734803 2736242 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(2734803..2736242) Synechococcus sp. JA-3-3Ab 3899366 YP_476087.1 CDS CYA_2716 NC_007775.1 2736469 2736819 D hypothetical protein 2736469..2736819 Synechococcus sp. JA-3-3Ab 3899367 YP_476088.1 CDS CYA_2717 NC_007775.1 2736917 2737156 D identified by similarity to GB:BAC10019.1; hypothetical protein 2736917..2737156 Synechococcus sp. JA-3-3Ab 3899368 YP_476089.1 CDS CYA_2718 NC_007775.1 2737203 2738195 R hypothetical protein complement(2737203..2738195) Synechococcus sp. JA-3-3Ab 3899369 YP_476090.1 CDS CYA_2719 NC_007775.1 2738226 2738507 R hypothetical protein complement(2738226..2738507) Synechococcus sp. JA-3-3Ab 3899370 YP_529506.1 CDS CYA_2721 NC_007775.1 2739836 2740009 D This gene is disrupted by an insertion of an ISSoc4 element.; ISSoc3, orfA transposase, interruption-N 2739836..2740009 Synechococcus sp. JA-3-3Ab 3899372 YP_476091.1 CDS CYA_2722 NC_007775.1 2740043 2740447 D identified by similarity to GB:AAC97588.1; ISSoc4, transposase orfA 2740043..2740447 Synechococcus sp. JA-3-3Ab 3899373 YP_529507.1 CDS CYA_2724 NC_007775.1 2741015 2741329 D This gene is disrupted by an insertion of an ISSoc4 element.; identified by match to protein family HMM PF01797; ISSoc3, orfA transposase, interruption-C 2741015..2741329 Synechococcus sp. JA-3-3Ab 3969019 YP_476092.1 CDS CYA_2725 NC_007775.1 2741474 2741728 D hypothetical protein 2741474..2741728 Synechococcus sp. JA-3-3Ab 3898693 YP_476093.1 CDS CYA_2726 NC_007775.1 2741783 2742499 D identified by match to protein family HMM PF04402; outer membrane protein 2741783..2742499 Synechococcus sp. JA-3-3Ab 3898694 YP_476094.1 CDS CYA_2727 NC_007775.1 2742709 2744052 D identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator 2742709..2744052 Synechococcus sp. JA-3-3Ab 3898695 YP_476095.1 CDS CYA_2728 NC_007775.1 2744120 2744623 D hypothetical protein 2744120..2744623 Synechococcus sp. JA-3-3Ab 3898696 YP_476096.1 CDS aroE NC_007775.1 2744659 2745534 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 2744659..2745534 Synechococcus sp. JA-3-3Ab 3898697 YP_476097.1 CDS CYA_2730 NC_007775.1 2745811 2747475 D hypothetical protein 2745811..2747475 Synechococcus sp. JA-3-3Ab 3898698 YP_476098.1 CDS CYA_2731 NC_007775.1 2747491 2747706 D hypothetical protein 2747491..2747706 Synechococcus sp. JA-3-3Ab 3898699 YP_476099.1 CDS argS NC_007775.1 2747913 2749709 R identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456; arginyl-tRNA synthetase complement(2747913..2749709) Synechococcus sp. JA-3-3Ab 3898700 YP_476100.1 CDS CYA_2733 NC_007775.1 2749921 2750025 D hypothetical protein 2749921..2750025 Synechococcus sp. JA-3-3Ab 3898701 YP_476101.1 CDS CYA_2734 NC_007775.1 2750055 2750906 D identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta/FixA family protein 2750055..2750906 Synechococcus sp. JA-3-3Ab 3898702 YP_476102.1 CDS CYA_2735 NC_007775.1 2751044 2752162 D identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha/FixB family protein 2751044..2752162 Synechococcus sp. JA-3-3Ab 3898703 YP_476103.1 CDS CYA_2736 NC_007775.1 2752181 2752465 R identified by similarity to PIR:AI1923; match to protein family HMM PF02325; hypothetical protein complement(2752181..2752465) Synechococcus sp. JA-3-3Ab 3898704 YP_476104.1 CDS CYA_2737 NC_007775.1 2752755 2753897 D identified by match to protein family HMM PF00072; response regulator 2752755..2753897 Synechococcus sp. JA-3-3Ab 3898705 YP_476105.1 CDS CYA_2738 NC_007775.1 2754125 2754511 D identified by match to protein family HMM PF00072; response regulator 2754125..2754511 Synechococcus sp. JA-3-3Ab 3898706 YP_476106.1 CDS CYA_2739 NC_007775.1 2754508 2754873 D identified by match to protein family HMM PF00072; response regulator 2754508..2754873 Synechococcus sp. JA-3-3Ab 3898707 YP_476107.1 CDS cheW NC_007775.1 2755039 2755503 D identified by similarity to SP:P07365; match to protein family HMM PF01584; chemotaxis protein cheW 2755039..2755503 Synechococcus sp. JA-3-3Ab 3898708 YP_476108.1 CDS CYA_2741 NC_007775.1 2755812 2758262 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 2755812..2758262 Synechococcus sp. JA-3-3Ab 3898709 YP_476109.1 CDS CYA_2742 NC_007775.1 2758450 2763711 D identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; sensor histidine kinase/response regulator 2758450..2763711 Synechococcus sp. JA-3-3Ab 3899315 YP_476110.1 CDS CYA_2743 NC_007775.1 2763846 2764490 D identified by similarity to PIR:AD2429; match to protein family HMM PF03713; hypothetical protein 2763846..2764490 Synechococcus sp. JA-3-3Ab 3899316 YP_476111.1 CDS lnt NC_007775.1 2764603 2766219 D identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546; apolipoprotein N-acyltransferase 2764603..2766219 Synechococcus sp. JA-3-3Ab 3899317 YP_476112.1 CDS cbiT NC_007775.1 2766533 2767138 D catalyzes the formation of precorrin-8x from precorrin-6y; precorrin-6B methylase 2766533..2767138 Synechococcus sp. JA-3-3Ab 3899319 YP_476113.1 CDS CYA_2747 NC_007775.1 2767286 2767540 D hypothetical protein 2767286..2767540 Synechococcus sp. JA-3-3Ab 3899320 YP_476114.1 CDS CYA_2748 NC_007775.1 2767600 2767962 R RlpA family protein, truncation complement(2767600..2767962) Synechococcus sp. JA-3-3Ab 3899321 YP_476115.1 CDS CYA_2750 NC_007775.1 2768582 2768833 D identified by similarity to SP:P24018; match to protein family HMM PF02941; ferredoxin-thioredoxin reductase, variable subunit 2768582..2768833 Synechococcus sp. JA-3-3Ab 3899322 YP_476116.1 CDS CYA_2749 NC_007775.1 2768830 2769303 R identified by similarity to PIR:S76420; hypothetical protein complement(2768830..2769303) Synechococcus sp. JA-3-3Ab 3899323 YP_476117.1 CDS hflB NC_007775.1 2769533 2771449 D identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; cell division protein FtsH 2769533..2771449 Synechococcus sp. JA-3-3Ab 3899324 YP_476118.1 CDS CYA_2752 NC_007775.1 2771629 2773785 R identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094; alpha-glucan phosphorylase complement(2771629..2773785) Synechococcus sp. JA-3-3Ab 3899325 YP_476119.1 CDS CYA_2753 NC_007775.1 2774241 2775344 R identified by match to protein family HMM TIGR02669; SpoIID/LytB domain-containing protein complement(2774241..2775344) Synechococcus sp. JA-3-3Ab 3899326 YP_476120.1 CDS CYA_2754 NC_007775.1 2775738 2776262 R identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein complement(2775738..2776262) Synechococcus sp. JA-3-3Ab 3899327 YP_476121.1 CDS CYA_2755 NC_007775.1 2776450 2777682 D identified by match to protein family HMM PF00089; match to protein family HMM PF00595; S1C family peptidase 2776450..2777682 Synechococcus sp. JA-3-3Ab 3899328 YP_476122.1 CDS CYA_2756 NC_007775.1 2778001 2779584 D identified by match to protein family HMM PF00069; match to protein family HMM PF05419; protein kinase 2778001..2779584 Synechococcus sp. JA-3-3Ab 3899329 YP_476123.1 CDS CYA_2757 NC_007775.1 2779652 2780014 R hypothetical protein complement(2779652..2780014) Synechococcus sp. JA-3-3Ab 3899330 YP_476124.1 CDS CYA_2758 NC_007775.1 2781031 2782305 R identified by match to protein family HMM PF01266; match to protein family HMM PF07992; oxidoreductase, FAD-dependent complement(2781031..2782305) Synechococcus sp. JA-3-3Ab 3899331 YP_476125.1 CDS CYA_2759 NC_007775.1 2782776 2785574 D identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation transport ATPase 2782776..2785574 Synechococcus sp. JA-3-3Ab 3899332 YP_476126.1 CDS CYA_2760 NC_007775.1 2785628 2786557 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01777; NAD-dependent epimerase/dehydratase family protein complement(2785628..2786557) Synechococcus sp. JA-3-3Ab 3899333 YP_476127.1 CDS CYA_2761 NC_007775.1 2786900 2787499 D identified by similarity to PIR:S74966; hypothetical protein 2786900..2787499 Synechococcus sp. JA-3-3Ab 3899261 YP_476128.1 CDS hemB NC_007775.1 2787500 2788486 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(2787500..2788486) Synechococcus sp. JA-3-3Ab 3899262 YP_476130.1 CDS CYA_2764 NC_007775.1 2789589 2789711 D hypothetical protein 2789589..2789711 Synechococcus sp. JA-3-3Ab 3899264 YP_476131.1 CDS psbI NC_007775.1 2789830 2789946 D 4.8-kDa protein; may be involved in assembling and stabilizing of PSII dimers; photosystem II reaction center I protein I 2789830..2789946 Synechococcus sp. JA-3-3Ab 3899265 YP_476132.1 CDS CYA_2766 NC_007775.1 2790058 2790498 R lipoprotein complement(2790058..2790498) Synechococcus sp. JA-3-3Ab 3899266 YP_476133.1 CDS CYA_2768 NC_007775.1 2790553 2790654 D hypothetical protein 2790553..2790654 Synechococcus sp. JA-3-3Ab 3899267 YP_476134.1 CDS CYA_2767 NC_007775.1 2790651 2791283 R identified by match to protein family HMM PF02632; BioY family protein complement(2790651..2791283) Synechococcus sp. JA-3-3Ab 3899268 YP_476135.1 CDS CYA_2769 NC_007775.1 2791340 2792134 D identified by match to protein family HMM PF00459; inositol monophosphatase family protein 2791340..2792134 Synechococcus sp. JA-3-3Ab 3899269 YP_476136.1 CDS CYA_2771 NC_007775.1 2792561 2793019 R identified by similarity to PIR:AD1978; hypothetical protein complement(2792561..2793019) Synechococcus sp. JA-3-3Ab 3899271 YP_476137.1 CDS CYA_2773 NC_007775.1 2793174 2795138 D identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; sensor histidine kinase 2793174..2795138 Synechococcus sp. JA-3-3Ab 3899272 YP_476138.1 CDS CYA_2772 NC_007775.1 2795117 2795275 R hypothetical protein complement(2795117..2795275) Synechococcus sp. JA-3-3Ab 3899273 YP_476139.1 CDS CYA_2774 NC_007775.1 2795279 2795845 R identified by match to protein family HMM PF03364; cyclase/dehydrase complement(2795279..2795845) Synechococcus sp. JA-3-3Ab 3899274 YP_476140.1 CDS CYA_2775 NC_007775.1 2795942 2796187 R hypothetical protein complement(2795942..2796187) Synechococcus sp. JA-3-3Ab 3899275 YP_476141.1 CDS petN NC_007775.1 2796321 2796410 D identified by similarity to SP:Q8DKN2; match to protein family HMM PF03742; cytochrome b6-f complex subunit VIII 2796321..2796410 Synechococcus sp. JA-3-3Ab 3899276 YP_476142.1 CDS CYA_2777 NC_007775.1 2796426 2796614 D hypothetical protein 2796426..2796614 Synechococcus sp. JA-3-3Ab 3899277 YP_476143.1 CDS CYA_2778 NC_007775.1 2796655 2797047 R identified by similarity to GB:BAC08685.1; match to protein family HMM PF03745; hypothetical protein complement(2796655..2797047) Synechococcus sp. JA-3-3Ab 3899278 YP_476144.1 CDS CYA_2779 NC_007775.1 2797035 2799542 R identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; sensor histidine kinase complement(2797035..2799542) Synechococcus sp. JA-3-3Ab 3899008 YP_476145.1 CDS CYA_2780 NC_007775.1 2799667 2800452 R identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase complement(2799667..2800452) Synechococcus sp. JA-3-3Ab 3899009 YP_476146.1 CDS CYA_2781 NC_007775.1 2800623 2801213 D identified by similarity to GB:BAC09340.1; hypothetical protein 2800623..2801213 Synechococcus sp. JA-3-3Ab 3899010 YP_476147.1 CDS CYA_2782 NC_007775.1 2801731 2802735 D identified by match to protein family HMM PF01547; iron ABC transporter iron-binding subunit 2801731..2802735 Synechococcus sp. JA-3-3Ab 3899011 YP_476148.1 CDS CYA_2783 NC_007775.1 2802736 2804442 D identified by match to protein family HMM PF00528; iron ABC transporter permease 2802736..2804442 Synechococcus sp. JA-3-3Ab 3899012 YP_476149.1 CDS CYA_2784 NC_007775.1 2804390 2804542 D hypothetical protein 2804390..2804542 Synechococcus sp. JA-3-3Ab 3899013 YP_476150.1 CDS ugpB NC_007775.1 2804598 2805950 D identified by similarity to SP:P10904; match to protein family HMM PF01547; match to protein family HMM TIGR01409; glycerol-3-phosphate ABC transporter substrate binding protein 2804598..2805950 Synechococcus sp. JA-3-3Ab 3899014 YP_476151.1 CDS upgA NC_007775.1 2806202 2807254 D identified by similarity to SP:P10905; match to protein family HMM PF00528; glycerol-3-phosphate ABC transporter permease 2806202..2807254 Synechococcus sp. JA-3-3Ab 3899015 YP_476152.1 CDS CYA_2787 NC_007775.1 2807279 2807713 R identified by similarity to PIR:S74730; hypothetical protein complement(2807279..2807713) Synechococcus sp. JA-3-3Ab 3899016 YP_476153.1 CDS rpsO NC_007775.1 2807749 2808024 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(2807749..2808024) Synechococcus sp. JA-3-3Ab 3899017 YP_476154.1 CDS CYA_2789 NC_007775.1 2808113 2808793 D identified by match to protein family HMM PF02985; match to protein family HMM PF03130; phycocyanin alpha subunit phycocyanobilin lyase, CpcF subunit-like protein 2808113..2808793 Synechococcus sp. JA-3-3Ab 3899018 YP_476155.1 CDS apcD NC_007775.1 2808860 2809345 R identified by similarity to SP:P80556; match to protein family HMM PF00502; allophycocyanin alpha, B subunit complement(2808860..2809345) Synechococcus sp. JA-3-3Ab 3899019 YP_476156.1 CDS pilT-2 NC_007775.1 2809533 2810900 R identified by similarity to GB:AAB30824.1; match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching mobility protein PilT complement(2809533..2810900) Synechococcus sp. JA-3-3Ab 3899020 YP_476157.1 CDS folE NC_007775.1 2811142 2811831 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(2811142..2811831) Synechococcus sp. JA-3-3Ab 3899021 YP_476158.1 CDS CYA_2793 NC_007775.1 2811955 2812680 R identified by match to protein family HMM PF00106; short chain dehydrogenase complement(2811955..2812680) Synechococcus sp. JA-3-3Ab 3899022 YP_476159.1 CDS CYA_2794 NC_007775.1 2812905 2814101 D identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 2812905..2814101 Synechococcus sp. JA-3-3Ab 3899023 YP_476160.1 CDS CYA_2795 NC_007775.1 2814557 2815450 D identified by match to protein family HMM PF04278; chloroplast envelope protein translocase (CEPT or Tic-Toc) family protein 2814557..2815450 Synechococcus sp. JA-3-3Ab 3899024 YP_476161.1 CDS CYA_2796 NC_007775.1 2815492 2816349 D identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; HemK family methyltransferase 2815492..2816349 Synechococcus sp. JA-3-3Ab 3899025 YP_476162.1 CDS CYA_2797 NC_007775.1 2816491 2817261 D identified by match to protein family HMM PF00512; sensor histidine kinase 2816491..2817261 Synechococcus sp. JA-3-3Ab 3899026 YP_476163.1 CDS CYA_2798 NC_007775.1 2817287 2817688 R identified by similarity to SP:P74367; photosystem II protein complement(2817287..2817688) Synechococcus sp. JA-3-3Ab 3899027 YP_476164.1 CDS CYA_2799 NC_007775.1 2817785 2818501 D identified by match to protein family HMM PF07298; NnrU family protein 2817785..2818501 Synechococcus sp. JA-3-3Ab 3898989 YP_476165.1 CDS trx-3 NC_007775.1 2818536 2818928 D identified by match to protein family HMM PF00085; thioredoxin 2818536..2818928 Synechococcus sp. JA-3-3Ab 3898990 YP_476166.1 CDS CYA_2800 NC_007775.1 2818865 2820454 R identified by match to protein family HMM PF02538; hydantoin utilization protein B complement(2818865..2820454) Synechococcus sp. JA-3-3Ab 3898991 YP_476167.1 CDS CYA_2802 NC_007775.1 2820451 2820759 R hypothetical protein complement(2820451..2820759) Synechococcus sp. JA-3-3Ab 3898992 YP_476168.1 CDS CYA_2803 NC_007775.1 2820791 2821531 R identified by match to protein family HMM PF00595; PDZ domain-containing protein complement(2820791..2821531) Synechococcus sp. JA-3-3Ab 3898993 YP_476169.1 CDS pip NC_007775.1 2821568 2822518 R identified by similarity to SP:P52279; match to protein family HMM PF00561; match to protein family HMM TIGR01249; prolyl aminopeptidase complement(2821568..2822518) Synechococcus sp. JA-3-3Ab 3898994 YP_476170.1 CDS CYA_2805 NC_007775.1 2822552 2824759 R identified by match to protein family HMM PF03065; glycosyl hydrolase family protein complement(2822552..2824759) Synechococcus sp. JA-3-3Ab 3898995 YP_476171.1 CDS CYA_2806 NC_007775.1 2824935 2825477 D identified by match to protein family HMM PF01844; HNH endonuclease domain-containing protein 2824935..2825477 Synechococcus sp. JA-3-3Ab 3898996 YP_476172.1 CDS CYA_2807 NC_007775.1 2825525 2826088 D CpeS-like protein 2825525..2826088 Synechococcus sp. JA-3-3Ab 3898997 YP_476173.1 CDS CYA_2809 NC_007775.1 2826212 2828101 D identified by match to protein family HMM PF00004; AAA ATPase 2826212..2828101 Synechococcus sp. JA-3-3Ab 3898998 YP_476174.1 CDS glcD NC_007775.1 2828098 2829564 R identified by match to protein family HMM PF01565; match to protein family HMM PF02913; match to protein family HMM TIGR00387; glycolate oxidase subunit GlcD complement(2828098..2829564) Synechococcus sp. JA-3-3Ab 3898999 YP_476175.1 CDS CYA_2810 NC_007775.1 2829694 2830884 D identified by similarity to PIR:AD1808; hypothetical protein 2829694..2830884 Synechococcus sp. JA-3-3Ab 3899000 YP_476176.1 CDS rpmI NC_007775.1 2831007 2831207 D identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 2831007..2831207 Synechococcus sp. JA-3-3Ab 3899001 YP_476177.1 CDS rplT NC_007775.1 2831330 2831686 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2831330..2831686 Synechococcus sp. JA-3-3Ab 3899002 YP_476178.1 CDS CYA_2814 NC_007775.1 2831691 2832491 D identified by match to protein family HMM PF00497; amino acid ABC transporter substrate-binding protein 2831691..2832491 Synechococcus sp. JA-3-3Ab 3899003 YP_476179.1 CDS purH NC_007775.1 2832488 2834101 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(2832488..2834101) Synechococcus sp. JA-3-3Ab 3899004 YP_476180.1 CDS CYA_2815 NC_007775.1 2834360 2835076 D identified by match to protein family HMM PF01618; MotA/TolQ/ExbB family proton transporter 2834360..2835076 Synechococcus sp. JA-3-3Ab 3899005 YP_476181.1 CDS CYA_2816 NC_007775.1 2835080 2835505 D identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472; ExbD/TolR family proton transporter 2835080..2835505 Synechococcus sp. JA-3-3Ab 3899006 YP_476182.1 CDS argF NC_007775.1 2835539 2836483 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(2835539..2836483) Synechococcus sp. JA-3-3Ab 3899007 YP_476183.1 CDS prc-2 NC_007775.1 2836589 2837884 R identified by similarity to SP:Q55669; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; C-terminal processing peptidase complement(2836589..2837884) Synechococcus sp. JA-3-3Ab 3898950 YP_476184.1 CDS CYA_2819 NC_007775.1 2837907 2838101 R hypothetical protein complement(2837907..2838101) Synechococcus sp. JA-3-3Ab 3898951 YP_476185.1 CDS proA NC_007775.1 2838133 2839500 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 2838133..2839500 Synechococcus sp. JA-3-3Ab 3898952 YP_476186.1 CDS CYA_2821 NC_007775.1 2839764 2840309 D identified by match to protein family HMM PF00076; RNA-binding protein 2839764..2840309 Synechococcus sp. JA-3-3Ab 3898953 YP_476187.1 CDS CYA_2822 NC_007775.1 2840401 2841195 D identified by match to protein family HMM PF01323; DSBA thioredoxin domain-containing protein 2840401..2841195 Synechococcus sp. JA-3-3Ab 3898954 YP_476188.1 CDS CYA_2823 NC_007775.1 2841219 2841914 D identified by match to protein family HMM PF01844; HNH endonuclease domain-containing protein 2841219..2841914 Synechococcus sp. JA-3-3Ab 3898955 YP_476189.1 CDS CYA_2824 NC_007775.1 2841989 2843173 R identified by match to protein family HMM PF05036; sporulation and cell division repeat-containing protein complement(2841989..2843173) Synechococcus sp. JA-3-3Ab 3898956 YP_476190.1 CDS CYA_2825 NC_007775.1 2843283 2843699 R hypothetical protein complement(2843283..2843699) Synechococcus sp. JA-3-3Ab 3898957 YP_476191.1 CDS recJ-2 NC_007775.1 2843803 2846259 D identified by match to protein family HMM PF01368; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 2843803..2846259 Synechococcus sp. JA-3-3Ab 3898958 YP_476192.1 CDS CYA_2827 NC_007775.1 2846282 2846947 D identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 2846282..2846947 Synechococcus sp. JA-3-3Ab 3898959 YP_476193.1 CDS rdgB NC_007775.1 2846998 2847591 D identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042; non-canonical purine NTP pyrophosphatase 2846998..2847591 Synechococcus sp. JA-3-3Ab 3898960 YP_476194.1 CDS CYA_2829 NC_007775.1 2847784 2848905 D hypothetical protein 2847784..2848905 Synechococcus sp. JA-3-3Ab 3898961 YP_476195.1 CDS tmk NC_007775.1 2848921 2849535 D identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase 2848921..2849535 Synechococcus sp. JA-3-3Ab 3898962 YP_476196.1 CDS CYA_2831 NC_007775.1 2849659 2850645 D identified by match to protein family HMM PF05235; CHAD domain-containing protein 2849659..2850645 Synechococcus sp. JA-3-3Ab 3898963 YP_476197.1 CDS CYA_2832 NC_007775.1 2850743 2851807 D identified by similarity to SP:P23861; match to protein family HMM PF01547; polyamine transporter, polyamine-binding protein 2850743..2851807 Synechococcus sp. JA-3-3Ab 3898964 YP_476198.1 CDS CYA_2834 NC_007775.1 2851881 2852051 D CAB/ELIP/HLIP family protein 2851881..2852051 Synechococcus sp. JA-3-3Ab 3898965 YP_476199.1 CDS CYA_2833 NC_007775.1 2851884 2852084 R hypothetical protein complement(2851884..2852084) Synechococcus sp. JA-3-3Ab 3898966 YP_476200.1 CDS CYA_2835 NC_007775.1 2852088 2852207 R hypothetical protein complement(2852088..2852207) Synechococcus sp. JA-3-3Ab 3898967 YP_476201.1 CDS CYA_2836 NC_007775.1 2852264 2856835 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229; sensory box histidine kinase/response regulator complement(2852264..2856835) Synechococcus sp. JA-3-3Ab 3898968 YP_476202.1 CDS CYA_2837 NC_007775.1 2857206 2857583 D hypothetical protein 2857206..2857583 Synechococcus sp. JA-3-3Ab 3898969 YP_476203.1 CDS CYA_2838 NC_007775.1 2857857 2858252 D identified by similarity to GB:BAC71213.1; hypothetical protein 2857857..2858252 Synechococcus sp. JA-3-3Ab 3898933 YP_476204.1 CDS CYA_2839 NC_007775.1 2858386 2858478 D hypothetical protein 2858386..2858478 Synechococcus sp. JA-3-3Ab 3898934 YP_476205.1 CDS tgt NC_007775.1 2859006 2860109 D identified by match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449; queuine tRNA-ribosyltransferase 2859006..2860109 Synechococcus sp. JA-3-3Ab 3898936 YP_476206.1 CDS CYA_2842 NC_007775.1 2860211 2860822 D hypothetical protein 2860211..2860822 Synechococcus sp. JA-3-3Ab 3898937 YP_476207.1 CDS CYA_2843 NC_007775.1 2860886 2862127 D hypothetical protein 2860886..2862127 Synechococcus sp. JA-3-3Ab 3898938 YP_476208.1 CDS CYA_2844 NC_007775.1 2862134 2862430 D hypothetical protein 2862134..2862430 Synechococcus sp. JA-3-3Ab 3898939 YP_476209.1 CDS CYA_2845 NC_007775.1 2862567 2862965 D identified by similarity to PIR:AD2038; ISSoc4, transposase orfA 2862567..2862965 Synechococcus sp. JA-3-3Ab 3898940 YP_476210.1 CDS CYA_2846 NC_007775.1 2863004 2863513 D identified by similarity to PIR:AI1851; ISSoc4, transposase orfB 2863004..2863513 Synechococcus sp. JA-3-3Ab 3898941 YP_476211.1 CDS scpB NC_007775.1 2863854 2864408 D identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281; segregation and condensation protein B 2863854..2864408 Synechococcus sp. JA-3-3Ab 3898943 YP_476212.1 CDS CYA_2849 NC_007775.1 2864615 2865265 R identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein complement(2864615..2865265) Synechococcus sp. JA-3-3Ab 3898944 YP_476213.1 CDS CYA_2850 NC_007775.1 2865498 2866601 D identified by similarity to PIR:AD1911; hypothetical protein 2865498..2866601 Synechococcus sp. JA-3-3Ab 3898945 YP_476214.1 CDS CYA_2851 NC_007775.1 2866651 2867733 R identified by match to protein family HMM PF00924; small conductance mechanosensitive ion channel (MscS) family protein complement(2866651..2867733) Synechococcus sp. JA-3-3Ab 3898946 YP_476215.1 CDS CYA_2852 NC_007775.1 2867888 2868757 R identified by match to protein family HMM PF02230; phospholipase/carboxylesterase complement(2867888..2868757) Synechococcus sp. JA-3-3Ab 3898947 YP_476216.1 CDS CYA_2853 NC_007775.1 2868880 2869464 R identified by match to protein family HMM PF02517; CAAX amino terminal protease family protein complement(2868880..2869464) Synechococcus sp. JA-3-3Ab 3898948 YP_476217.1 CDS CYA_2854 NC_007775.1 2869616 2870695 R identified by match to protein family HMM PF04230; polysaccharide pyruvyl transferase complement(2869616..2870695) Synechococcus sp. JA-3-3Ab 3898949 YP_476218.1 CDS CYA_2855 NC_007775.1 2871121 2871414 R hypothetical protein complement(2871121..2871414) Synechococcus sp. JA-3-3Ab 3898838 YP_476219.1 CDS CYA_2856 NC_007775.1 2871556 2873538 D identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; 1A family penicillin-binding protein 2871556..2873538 Synechococcus sp. JA-3-3Ab 3898839 YP_476220.1 CDS CYA_2857 NC_007775.1 2873535 2873894 D hypothetical protein 2873535..2873894 Synechococcus sp. JA-3-3Ab 3898840 YP_476221.1 CDS sodB NC_007775.1 2874084 2874683 D identified by similarity to SP:P50061; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase, Fe 2874084..2874683 Synechococcus sp. JA-3-3Ab 3898841 YP_476222.1 CDS CYA_2859 NC_007775.1 2874783 2876375 R identified by similarity to GB:AAD42859.1; match to protein family HMM PF00069; serine/threonine protein kinase complement(2874783..2876375) Synechococcus sp. JA-3-3Ab 3898842 YP_476223.1 CDS CYA_2860 NC_007775.1 2876391 2876576 D hypothetical protein 2876391..2876576 Synechococcus sp. JA-3-3Ab 3898843 YP_476224.1 CDS CYA_2861 NC_007775.1 2876637 2878715 D identified by match to protein family HMM PF00582; match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein 2876637..2878715 Synechococcus sp. JA-3-3Ab 3898844 YP_476225.1 CDS glyS NC_007775.1 2879174 2881366 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 2879174..2881366 Synechococcus sp. JA-3-3Ab 3898845 YP_476226.1 CDS CYA_2863 NC_007775.1 2881409 2882332 R identified by match to protein family HMM PF01636; match to protein family HMM PF03881; fructosamine kinase family protein complement(2881409..2882332) Synechococcus sp. JA-3-3Ab 3898846 YP_476227.1 CDS CYA_2864 NC_007775.1 2882340 2882792 R identified by similarity to GB:BAC09213.1; hypothetical protein complement(2882340..2882792) Synechococcus sp. JA-3-3Ab 3898847 YP_476228.1 CDS CYA_2865 NC_007775.1 2882905 2883444 R identified by match to protein family HMM PF03029; small GTP-binding protein complement(2882905..2883444) Synechococcus sp. JA-3-3Ab 3898848 YP_476229.1 CDS CYA_2866 NC_007775.1 2883501 2884055 R identified by similarity to GB:BAC09541.1; hypothetical protein complement(2883501..2884055) Synechococcus sp. JA-3-3Ab 3898849 YP_476230.1 CDS CYA_2867 NC_007775.1 2884109 2884477 R identified by match to protein family HMM PF03259; roadblock/LC7 domain-contain protein complement(2884109..2884477) Synechococcus sp. JA-3-3Ab 3898850 YP_476231.1 CDS CYA_2868 NC_007775.1 2884602 2885483 R identified by similarity to GB:BAC09544.1; hypothetical protein complement(2884602..2885483) Synechococcus sp. JA-3-3Ab 3898851 YP_476232.1 CDS CYA_2869 NC_007775.1 2885818 2886651 R identified by similarity to GB:BAC09544.1; hypothetical protein complement(2885818..2886651) Synechococcus sp. JA-3-3Ab 3898852 YP_476233.1 CDS CYA_2870 NC_007775.1 2886813 2887649 R hypothetical protein complement(2886813..2887649) Synechococcus sp. JA-3-3Ab 3898853 YP_476234.1 CDS CYA_2871 NC_007775.1 2887938 2890445 R identified by similarity to SP:P37279; similarity to SP:P37385; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase complement(2887938..2890445) Synechococcus sp. JA-3-3Ab 3898854 YP_476235.1 CDS CYA_2872 NC_007775.1 2890538 2890807 R hypothetical protein complement(2890538..2890807) Synechococcus sp. JA-3-3Ab 3898855 YP_476236.1 CDS fabF NC_007775.1 2890820 2892085 R FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II complement(2890820..2892085) Synechococcus sp. JA-3-3Ab 3898856 YP_476237.1 CDS acpP NC_007775.1 2892183 2892428 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(2892183..2892428) Synechococcus sp. JA-3-3Ab 3898857 YP_476238.1 CDS rpsF NC_007775.1 2892660 2892950 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 2892660..2892950 Synechococcus sp. JA-3-3Ab 3898743 YP_476239.1 CDS CYA_2876 NC_007775.1 2893038 2893436 D identified by match to protein family HMM PF00436; single-strand binding protein 2893038..2893436 Synechococcus sp. JA-3-3Ab 3898744 YP_476240.1 CDS CYA_2877 NC_007775.1 2893463 2894092 D identified by match to protein family HMM PF00246; zinc carboxypeptidase 2893463..2894092 Synechococcus sp. JA-3-3Ab 3898745 YP_476241.1 CDS CYA_2878 NC_007775.1 2894125 2894838 D identified by match to protein family HMM PF00582; universal stress protein 2894125..2894838 Synechococcus sp. JA-3-3Ab 3898746 YP_476242.1 CDS CYA_2879 NC_007775.1 2894859 2896280 R hypothetical protein complement(2894859..2896280) Synechococcus sp. JA-3-3Ab 3898747 YP_476243.1 CDS CYA_2880 NC_007775.1 2896298 2897866 R hypothetical protein complement(2896298..2897866) Synechococcus sp. JA-3-3Ab 3898748 YP_476244.1 CDS CYA_2881 NC_007775.1 2897891 2898676 R hypothetical protein complement(2897891..2898676) Synechococcus sp. JA-3-3Ab 3898749 YP_476245.1 CDS CYA_2882 NC_007775.1 2898673 2899683 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2898673..2899683) Synechococcus sp. JA-3-3Ab 3898750 YP_476246.1 CDS purM NC_007775.1 2899886 2900941 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(2899886..2900941) Synechococcus sp. JA-3-3Ab 3898751 YP_476247.1 CDS CYA_2884 NC_007775.1 2901087 2902190 D identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413; rare lipoprotein A family protein 2901087..2902190 Synechococcus sp. JA-3-3Ab 3898752 YP_476248.1 CDS CYA_2885 NC_007775.1 2902191 2903213 R identified by match to protein family HMM PF00072; response regulator complement(2902191..2903213) Synechococcus sp. JA-3-3Ab 3898753 YP_476249.1 CDS CYA_2886 NC_007775.1 2903225 2906293 R identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07568; match to protein family HMM TIGR00229; sensory box histidine kinase complement(2903225..2906293) Synechococcus sp. JA-3-3Ab 3898754 YP_476250.1 CDS prs NC_007775.1 2906453 2907451 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(2906453..2907451) Synechococcus sp. JA-3-3Ab 3898755 YP_476251.1 CDS CYA_2888 NC_007775.1 2907571 2909103 D identified by match to protein family HMM PF00005; sugar ABC transporter, ATP-binding protein 2907571..2909103 Synechococcus sp. JA-3-3Ab 3898756 YP_476252.1 CDS CYA_2889 NC_007775.1 2909517 2914181 D identified by match to protein family HMM PF05154; TM2 domain-containing protein 2909517..2914181 Synechococcus sp. JA-3-3Ab 3898757 YP_476253.1 CDS CYA_2890 NC_007775.1 2914272 2915582 D identified by match to protein family HMM PF01098; rod shape-determining protein RodA 2914272..2915582 Synechococcus sp. JA-3-3Ab 3898758 YP_476254.1 CDS CYA_2891 NC_007775.1 2915932 2917158 D identified by similarity to OMNI:NT01MC1419; match to protein family HMM PF00266; match to protein family HMM PF01212; class V aminotransferase 2915932..2917158 Synechococcus sp. JA-3-3Ab 3898759 YP_476255.1 CDS CYA_2892 NC_007775.1 2917183 2917791 D hypothetical protein 2917183..2917791 Synechococcus sp. JA-3-3Ab 3898760 YP_476256.1 CDS uppS NC_007775.1 2917951 2918697 R identified by similarity to SP:P58563; match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase complement(2917951..2918697) Synechococcus sp. JA-3-3Ab 3898761 YP_476257.1 CDS CYA_2894 NC_007775.1 2918703 2919626 R identified by similarity to GB:BAC09314.1; match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein complement(2918703..2919626) Synechococcus sp. JA-3-3Ab 3898662 YP_476258.1 CDS lysA NC_007775.1 2919862 2921238 R identified by similarity to SP:P23630; match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase complement(2919862..2921238) Synechococcus sp. JA-3-3Ab 3898663 YP_476259.1 CDS miaB NC_007775.1 2921618 2922979 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(2921618..2922979) Synechococcus sp. JA-3-3Ab 3898666 YP_476260.1 CDS purA NC_007775.1 2923162 2924511 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(2923162..2924511) Synechococcus sp. JA-3-3Ab 3898667 YP_476261.1 CDS CYA_2900 NC_007775.1 2924669 2926240 R identified by match to protein family HMM PF03572; S41 family peptidase complement(2924669..2926240) Synechococcus sp. JA-3-3Ab 3898668 YP_476262.1 CDS CYA_2901 NC_007775.1 2926369 2926956 R identified by match to protein family HMM PF05685; hypothetical protein complement(2926369..2926956) Synechococcus sp. JA-3-3Ab 3898669 YP_476263.1 CDS CYA_2902 NC_007775.1 2926874 2928259 R hypothetical protein complement(2926874..2928259) Synechococcus sp. JA-3-3Ab 3898670 YP_476264.1 CDS smc NC_007775.1 2928366 2931908 R identified by match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02169; chromosome segregation protein SMC complement(2928366..2931908) Synechococcus sp. JA-3-3Ab 3898671 YP_476265.1 CDS rnpA NC_007775.1 2931984 2932364 R identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P complement(2931984..2932364) Synechococcus sp. JA-3-3Ab 3898672 YP_529508.1 CDS rpmH NC_007775.1 2932455 2932595 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(2932455..2932595) Synechococcus sp. JA-3-3Ab 3898673 CYA_0033 tRNA CYA_0033 NC_007775.1 32386 32458 R tRNA-Met complement(32386..32458) Synechococcus sp. JA-3-3Ab 3897662 CYA_0168 tRNA CYA_0168 NC_007775.1 167006 167083 R tRNA-Arg complement(167006..167083) Synechococcus sp. JA-3-3Ab 3897776 CYA_0250 tRNA CYA_0250 NC_007775.1 253975 254046 D tRNA-Asn 253975..254046 Synechococcus sp. JA-3-3Ab 3897627 CYA_0351 tRNA CYA_0351 NC_007775.1 369842 369913 R tRNA-Gly complement(369842..369913) Synechococcus sp. JA-3-3Ab 3898019 CYA_0451 tRNA CYA_0451 NC_007775.1 470364 470435 D tRNA-Met 470364..470435 Synechococcus sp. JA-3-3Ab 3897500 CYA_0655 tRNA CYA_0655 NC_007775.1 664036 664109 D tRNA-Arg 664036..664109 Synechococcus sp. JA-3-3Ab 3897292 CYA_0670 tRNA CYA_0670 NC_007775.1 679734 679805 D tRNA-Gly 679734..679805 Synechococcus sp. JA-3-3Ab 3897250 CYA_0755 tRNA CYA_0755 NC_007775.1 760753 760832 D tRNA-Leu 760753..760832 Synechococcus sp. JA-3-3Ab 3898158 CYA_0823 tRNA CYA_0823 NC_007775.1 837478 837551 D tRNA-Arg 837478..837551 Synechococcus sp. JA-3-3Ab 3898150 CYA_0980 tRNA CYA_0980 NC_007775.1 994002 994075 R tRNA-Met complement(994002..994075) Synechococcus sp. JA-3-3Ab 3898337 CYA_1018 tRNA CYA_1018 NC_007775.1 1036257 1036328 D tRNA-Lys 1036257..1036328 Synechococcus sp. JA-3-3Ab 3898301 CYA_1087 tRNA CYA_1087 NC_007775.1 1109696 1109771 R tRNA-Ala complement(1109696..1109771) Synechococcus sp. JA-3-3Ab 3898441 CYA_1088 tRNA CYA_1088 NC_007775.1 1109808 1109881 R tRNA-Ile complement(1109808..1109881) Synechococcus sp. JA-3-3Ab 3898442 CYA_1191 tRNA CYA_1191 NC_007775.1 1205694 1205766 R tRNA-Glu complement(1205694..1205766) Synechococcus sp. JA-3-3Ab 3898900 CYA_1198 tRNA CYA_1198 NC_007775.1 1210512 1210602 R tRNA-Ser complement(1210512..1210602) Synechococcus sp. JA-3-3Ab 3898907 CYA_1207 tRNA CYA_1207 NC_007775.1 1217328 1217408 D tRNA-Leu 1217328..1217408 Synechococcus sp. JA-3-3Ab 3899280 CYA_1330 tRNA CYA_1330 NC_007775.1 1345120 1345192 R tRNA-Phe complement(1345120..1345192) Synechococcus sp. JA-3-3Ab 3899498 CYA_1344 tRNA CYA_1344 NC_007775.1 1355452 1355523 R tRNA-Lys complement(1355452..1355523) Synechococcus sp. JA-3-3Ab 3899550 CYA_1348 tRNA CYA_1348 NC_007775.1 1361661 1361736 R tRNA-Arg complement(1361661..1361736) Synechococcus sp. JA-3-3Ab 3899555 CYA_1352 tRNA CYA_1352 NC_007775.1 1363175 1363248 D tRNA-Pro 1363175..1363248 Synechococcus sp. JA-3-3Ab 3899653 CYA_1410 tRNA CYA_1410 NC_007775.1 1415958 1416029 D tRNA-Val 1415958..1416029 Synechococcus sp. JA-3-3Ab 3898916 CYA_1422 tRNA CYA_1422 NC_007775.1 1430438 1430510 R tRNA-Ala complement(1430438..1430510) Synechococcus sp. JA-3-3Ab 3898928 CYA_1464 tRNA CYA_1464 NC_007775.1 1470167 1470239 D tRNA-Ala 1470167..1470239 Synechococcus sp. JA-3-3Ab 3899143 CYA_1596 tRNA CYA_1596 NC_007775.1 1607074 1607145 D tRNA-Cys 1607074..1607145 Synechococcus sp. JA-3-3Ab 3899745 CYA_1618 tRNA CYA_1618 NC_007775.1 1622360 1622435 R tRNA-Trp complement(1622360..1622435) Synechococcus sp. JA-3-3Ab 3898423 CYA_1637 tRNA CYA_1637 NC_007775.1 1638093 1638166 R tRNA-Pro complement(1638093..1638166) Synechococcus sp. JA-3-3Ab 3898195 CYA_1790 tRNA CYA_1790 NC_007775.1 1790745 1790817 D tRNA-His 1790745..1790817 Synechococcus sp. JA-3-3Ab 3898603 CYA_1815 tRNA CYA_1815 NC_007775.1 1822297 1822383 R tRNA-Leu complement(1822297..1822383) Synechococcus sp. JA-3-3Ab 3898572 CYA_1853 tRNA CYA_1853 NC_007775.1 1857612 1857695 R tRNA-Leu complement(1857612..1857695) Synechococcus sp. JA-3-3Ab 3899907 CYA_1884 tRNA CYA_1884 NC_007775.1 1890240 1890313 D tRNA-Asp 1890240..1890313 Synechococcus sp. JA-3-3Ab 3899862 CYA_1952 tRNA CYA_1952 NC_007775.1 1964028 1964115 D tRNA-Ser 1964028..1964115 Synechococcus sp. JA-3-3Ab 3899643 CYA_1972 tRNA CYA_1972 NC_007775.1 1989763 1989836 D tRNA-Pro 1989763..1989836 Synechococcus sp. JA-3-3Ab 3899606 CYA_2244 tRNA CYA_2244 NC_007775.1 2255503 2255590 R tRNA-Ser complement(2255503..2255590) Synechococcus sp. JA-3-3Ab 3898684 CYA_2268 tRNA CYA_2268 NC_007775.1 2277877 2277957 R tRNA-Leu complement(2277877..2277957) Synechococcus sp. JA-3-3Ab 3898796 CYA_2287 tRNA CYA_2287 NC_007775.1 2291451 2291522 R tRNA-Val complement(2291451..2291522) Synechococcus sp. JA-3-3Ab 3898778 CYA_2303 tRNA CYA_2303 NC_007775.1 2305106 2305177 D tRNA-Val 2305106..2305177 Synechococcus sp. JA-3-3Ab 3898738 CYA_2308 tRNA CYA_2308 NC_007775.1 2311966 2312039 D tRNA-Ile 2311966..2312039 Synechococcus sp. JA-3-3Ab 3898710 CYA_2309 tRNA CYA_2309 NC_007775.1 2312076 2312151 D tRNA-Ala 2312076..2312151 Synechococcus sp. JA-3-3Ab 3898711 CYA_2397 tRNA CYA_2397 NC_007775.1 2409055 2409127 R tRNA-Thr complement(2409055..2409127) Synechococcus sp. JA-3-3Ab 3898483 CYA_2490 tRNA CYA_2490 NC_007775.1 2500377 2500463 D tRNA-OTHER 2500377..2500463 Synechococcus sp. JA-3-3Ab 3897719 CYA_2677 tRNA CYA_2677 NC_007775.1 2693023 2693094 D tRNA-Gln 2693023..2693094 Synechococcus sp. JA-3-3Ab 3899534 CYA_2745 tRNA CYA_2745 NC_007775.1 2766302 2766374 D tRNA-Thr 2766302..2766374 Synechococcus sp. JA-3-3Ab 3899318 CYA_2770 tRNA CYA_2770 NC_007775.1 2792396 2792466 R tRNA-Gly complement(2792396..2792466) Synechococcus sp. JA-3-3Ab 3899270 CYA_2840 tRNA CYA_2840 NC_007775.1 2858802 2858884 R tRNA-Leu complement(2858802..2858884) Synechococcus sp. JA-3-3Ab 3898935 CYA_2847 tRNA CYA_2847 NC_007775.1 2863555 2863639 R tRNA-Ser complement(2863555..2863639) Synechococcus sp. JA-3-3Ab 3898942 CYA_2896 tRNA CYA_2896 NC_007775.1 2921457 2921542 D tRNA-Tyr 2921457..2921542 Synechococcus sp. JA-3-3Ab 3898664 CYA_2898 tRNA CYA_2898 NC_007775.1 2921547 2921618 D tRNA-Thr 2921547..2921618 Synechococcus sp. JA-3-3Ab 3898665 CYA_1085 rRNA rrfA NC_007775.1 1106587 1106706 R 5S ribosomal RNA complement(1106587..1106706) Synechococcus sp. JA-3-3Ab 3898439 CYA_1086 rRNA rrlA NC_007775.1 1106765 1109571 R 23S ribosomal RNA complement(1106765..1109571) Synechococcus sp. JA-3-3Ab 3898440 CYA_1089 rRNA rrsA NC_007775.1 1110127 1111450 R 16S ribosomal RNA complement(1110127..1111450) Synechococcus sp. JA-3-3Ab 3898443 CYA_2307 rRNA rrsB NC_007775.1 2310397 2311720 D 16S ribosomal RNA 2310397..2311720 Synechococcus sp. JA-3-3Ab 3898742 CYA_2310 rRNA rrlB NC_007775.1 2312276 2315082 D 23S ribosomal RNA 2312276..2315082 Synechococcus sp. JA-3-3Ab 3898712 CYA_2311 rRNA rrfB NC_007775.1 2315141 2315260 D 5S ribosomal RNA 2315141..2315260 Synechococcus sp. JA-3-3Ab 3898713