; oligo-analysis -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i $RSAT/public_html/data/genomes/Tetranychus_urticae.ASM23943v1.34/genome/Tetranychus_urticae.ASM23943v1.34_stop_codons.wc -o $RSAT/public_html/data/genomes/Tetranychus_urticae.ASM23943v1.34/genome/Tetranychus_urticae.ASM23943v1.34_stop_codon_frequencies.tab ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Slow counting mode ; Oligomer length 3 ; Input file $RSAT/public_html/data/genomes/Tetranychus_urticae.ASM23943v1.34/genome/Tetranychus_urticae.ASM23943v1.34_stop_codons.wc ; Input format wc ; Output file $RSAT/public_html/data/genomes/Tetranychus_urticae.ASM23943v1.34/genome/Tetranychus_urticae.ASM23943v1.34_stop_codon_frequencies.tab ; Count overlapping matches ; Counted on a single strand ; Background model Bernoulli ; Background estimation method ; Sequence type DNA ; Nb of sequences 62484 ; Sum of sequence lengths 187452 ; discarded residues 198 (other letters than ACGT) ; discarded occurrences 74 (contain discarded residues) ; nb possible positions 62410 ; total oligo occurrences 62410 ; alphabet size 4 ; nb possible oligomers 64 ; oligomers tested for significance 0 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 obs_freq observed relative frequency ; 4 occ observed occurrences #seq id obs_freq occ aag aag 0.1200288415318 7491 cag cag 0.0723281525397 4514 aaa aaa 0.0583079634674 3639 gag gag 0.0454414356674 2836 atg atg 0.0404582598942 2525 caa caa 0.0354590610479 2213 aat aat 0.0354590610479 2213 ttg ttg 0.0340650536773 2126 att att 0.0256849863804 1603 gat gat 0.0227848101266 1422 gaa gaa 0.0220157026118 1374 ttt ttt 0.0218234257331 1362 tgg tgg 0.0198045185066 1236 tag tag 0.0194039416760 1211 ctg ctg 0.0183944880628 1148 tat tat 0.0181381188912 1132 cat cat 0.0156865886877 979 aga aga 0.0147892965871 923 tcg tcg 0.0145649735619 909 agg agg 0.0143246274635 894 ctt ctt 0.0138118891203 862 tct tct 0.0131228969716 819 tca tca 0.0128184585804 800 aac aac 0.0122095817978 762 gtt gtt 0.0120493510655 752 aca aca 0.0119532126262 746 act act 0.0109437590130 683 agt agt 0.0107675052075 672 acg acg 0.0107514821343 671 gtg gtg 0.0104470437430 652 gct gct 0.0102547668643 640 ttc ttc 0.0100464669124 627 tta tta 0.0097740746675 610 atc atc 0.0095657747156 597 ggt ggt 0.0094696362762 591 tgt tgt 0.0094375901298 589 cca cca 0.0092453132511 577 ata ata 0.0088447364204 552 taa taa 0.0088287133472 551 cct cct 0.0078192597340 488 cga cga 0.0076910751482 480 ccg ccg 0.0075148213427 469 gga gga 0.0070181060727 438 tga tga 0.0069219676334 432 gca gca 0.0061368370453 383 ctc ctc 0.0060887678257 380 gac gac 0.0060086524595 375 tac tac 0.0058163755808 363 tcc tcc 0.0055760294825 348 cgg cgg 0.0054798910431 342 acc acc 0.0051434065054 321 agc agc 0.0050632911392 316 ggg ggg 0.0044704374299 279 cac cac 0.0043582759173 272 cgt cgt 0.0043102066976 269 gcg gcg 0.0041820221118 261 tgc tgc 0.0041820221118 261 gtc gtc 0.0040858836725 255 gta gta 0.0039576990867 247 gcc gcc 0.0039256529402 245 cta cta 0.0035731453293 223 ggc ggc 0.0031565454254 197 ccc ccc 0.0023073225445 144 cgc cgc 0.0019067457138 119 ; Host name n51 ; Job started 2017-04-15.083343 ; Job done 2017-04-15.083344 ; Seconds 0.7 ; user 0.7 ; system 0.03 ; cuser 0 ; csystem 0